Query psy8869
Match_columns 593
No_of_seqs 363 out of 4134
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:25:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0050 TufB GTPases - transla 100.0 2.8E-77 6.2E-82 556.9 35.8 389 1-391 1-389 (394)
2 KOG0460|consensus 100.0 2.5E-76 5.5E-81 560.6 29.4 390 4-393 46-435 (449)
3 COG5256 TEF1 Translation elong 100.0 2.5E-74 5.5E-79 567.4 42.4 375 8-393 3-425 (428)
4 PRK12736 elongation factor Tu; 100.0 1E-70 2.3E-75 574.4 49.9 391 1-393 1-391 (394)
5 TIGR00485 EF-Tu translation el 100.0 3.5E-70 7.6E-75 571.6 49.9 391 1-393 1-391 (394)
6 PRK12735 elongation factor Tu; 100.0 6.2E-70 1.4E-74 568.9 50.1 391 1-393 1-393 (396)
7 PRK00049 elongation factor Tu; 100.0 3E-69 6.6E-74 563.1 50.7 391 1-393 1-393 (396)
8 PLN03127 Elongation factor Tu; 100.0 1.7E-69 3.6E-74 568.8 48.4 390 3-392 52-443 (447)
9 PLN03126 Elongation factor Tu; 100.0 2.5E-68 5.4E-73 562.0 49.1 386 6-393 75-475 (478)
10 CHL00071 tufA elongation facto 100.0 8.5E-68 1.8E-72 555.2 48.8 391 1-393 1-406 (409)
11 PLN00043 elongation factor 1-a 100.0 2.9E-67 6.3E-72 552.6 46.9 375 8-393 3-428 (447)
12 PTZ00141 elongation factor 1- 100.0 2.2E-66 4.7E-71 546.6 46.5 377 8-395 3-430 (446)
13 PRK12317 elongation factor 1-a 100.0 1.2E-63 2.6E-68 528.9 44.6 377 8-395 2-421 (425)
14 TIGR00483 EF-1_alpha translati 100.0 3E-63 6.6E-68 525.5 46.0 377 8-395 3-423 (426)
15 COG2895 CysN GTPases - Sulfate 100.0 1.6E-60 3.6E-65 456.2 34.6 370 9-396 3-417 (431)
16 PRK05124 cysN sulfate adenylyl 100.0 1.2E-59 2.6E-64 499.2 44.4 401 7-423 22-468 (474)
17 KOG0458|consensus 100.0 1.3E-60 2.8E-65 485.8 34.6 375 7-392 172-599 (603)
18 TIGR02034 CysN sulfate adenyly 100.0 1.3E-58 2.9E-63 484.6 42.1 363 13-391 1-406 (406)
19 COG5258 GTPBP1 GTPase [General 100.0 3.4E-59 7.3E-64 450.2 32.2 365 7-393 112-525 (527)
20 PTZ00327 eukaryotic translatio 100.0 5.8E-57 1.3E-61 472.0 43.2 351 8-392 30-450 (460)
21 PRK05506 bifunctional sulfate 100.0 2.2E-55 4.8E-60 485.9 51.2 420 8-444 20-486 (632)
22 KOG0459|consensus 100.0 6.4E-57 1.4E-61 437.5 27.7 373 8-393 75-498 (501)
23 PRK10512 selenocysteinyl-tRNA- 100.0 2.5E-54 5.4E-59 469.6 41.7 341 13-399 1-345 (614)
24 PRK04000 translation initiatio 100.0 9.3E-54 2E-58 447.8 43.7 353 4-391 1-410 (411)
25 KOG0463|consensus 100.0 5.5E-56 1.2E-60 426.1 22.0 361 12-394 133-546 (641)
26 TIGR03680 eif2g_arch translati 100.0 7.1E-53 1.5E-57 441.9 44.4 347 10-391 2-405 (406)
27 COG3276 SelB Selenocysteine-sp 100.0 1.5E-51 3.2E-56 409.4 33.2 340 13-397 1-342 (447)
28 TIGR00475 selB selenocysteine- 100.0 1.6E-50 3.4E-55 439.2 43.0 336 13-394 1-338 (581)
29 KOG1143|consensus 100.0 2.5E-51 5.4E-56 393.8 25.1 362 11-393 166-581 (591)
30 COG5257 GCD11 Translation init 100.0 5.7E-44 1.2E-48 338.0 34.1 347 10-391 8-411 (415)
31 TIGR01394 TypA_BipA GTP-bindin 100.0 2.3E-39 5.1E-44 350.7 34.1 281 13-300 2-289 (594)
32 KOG0461|consensus 100.0 4.8E-39 1E-43 306.5 24.8 364 11-398 6-410 (522)
33 KOG0462|consensus 100.0 4.3E-38 9.4E-43 317.5 22.5 334 10-380 58-398 (650)
34 COG1217 TypA Predicted membran 100.0 2.4E-37 5.2E-42 306.1 26.6 287 10-303 3-296 (603)
35 PRK10218 GTP-binding protein; 100.0 1.2E-36 2.5E-41 328.9 32.7 284 10-300 3-293 (607)
36 COG0481 LepA Membrane GTPase L 100.0 2.4E-37 5.2E-42 307.1 21.7 334 8-379 5-347 (603)
37 TIGR01393 lepA GTP-binding pro 100.0 2.5E-35 5.4E-40 320.3 33.9 268 11-300 2-278 (595)
38 PRK05433 GTP-binding protein L 100.0 2.3E-35 5E-40 320.9 32.7 270 9-300 4-282 (600)
39 PRK05609 nusG transcription an 100.0 4.3E-35 9.3E-40 273.9 21.9 178 416-593 3-180 (181)
40 TIGR00922 nusG transcription t 100.0 5.2E-35 1.1E-39 270.7 19.6 171 421-592 1-172 (172)
41 cd01884 EF_Tu EF-Tu subfamily. 100.0 6E-34 1.3E-38 268.1 23.2 193 11-205 1-195 (195)
42 PRK09014 rfaH transcriptional 100.0 3E-34 6.6E-39 262.4 16.3 161 419-593 2-162 (162)
43 COG0250 NusG Transcription ant 100.0 3.5E-33 7.7E-38 253.6 20.1 176 418-593 2-177 (178)
44 TIGR01955 RfaH transcriptional 100.0 1.1E-33 2.3E-38 258.7 15.5 159 421-591 1-159 (159)
45 PRK07560 elongation factor EF- 100.0 3.7E-31 8.1E-36 296.6 27.8 283 8-299 16-375 (731)
46 PRK00007 elongation factor G; 100.0 2.7E-30 5.9E-35 288.1 32.4 272 9-299 7-394 (693)
47 TIGR01956 NusG_myco NusG famil 100.0 4.3E-31 9.3E-36 247.9 20.8 173 420-592 1-258 (258)
48 TIGR00487 IF-2 translation ini 100.0 4.2E-30 9E-35 277.9 30.0 248 11-297 86-340 (587)
49 PRK12739 elongation factor G; 100.0 3.5E-30 7.6E-35 287.4 30.1 272 9-299 5-391 (691)
50 PRK05306 infB translation init 100.0 3.9E-30 8.4E-35 283.9 29.2 249 10-298 288-543 (787)
51 PF00009 GTP_EFTU: Elongation 100.0 7.2E-31 1.6E-35 247.7 19.6 182 10-204 1-188 (188)
52 PRK00741 prfC peptide chain re 100.0 3E-29 6.4E-34 268.7 31.1 273 10-299 8-380 (526)
53 TIGR00484 EF-G translation elo 100.0 3.1E-29 6.8E-34 280.0 32.0 272 9-299 7-392 (689)
54 TIGR00503 prfC peptide chain r 100.0 6.5E-29 1.4E-33 266.1 30.6 274 9-299 8-381 (527)
55 COG0480 FusA Translation elong 100.0 6.1E-29 1.3E-33 270.2 30.5 272 9-299 7-392 (697)
56 PRK13351 elongation factor G; 100.0 3.2E-28 6.8E-33 272.8 31.4 274 9-299 5-390 (687)
57 CHL00189 infB translation init 100.0 2E-28 4.2E-33 267.9 28.6 250 10-298 242-501 (742)
58 KOG0052|consensus 100.0 1.3E-30 2.8E-35 257.0 9.8 326 7-393 2-370 (391)
59 PRK04004 translation initiatio 100.0 7.8E-28 1.7E-32 261.0 29.9 227 11-264 5-284 (586)
60 cd01883 EF1_alpha Eukaryotic e 100.0 1.1E-28 2.5E-33 238.0 20.4 186 14-202 1-216 (219)
61 TIGR00490 aEF-2 translation el 100.0 2.6E-28 5.6E-33 273.0 24.3 283 8-299 15-374 (720)
62 COG4108 PrfC Peptide chain rel 100.0 8.9E-29 1.9E-33 244.3 18.0 273 10-299 10-382 (528)
63 PRK12740 elongation factor G; 100.0 1.1E-27 2.4E-32 268.0 29.3 265 18-299 1-373 (668)
64 TIGR00491 aIF-2 translation in 100.0 1.6E-27 3.5E-32 257.2 28.6 226 13-265 5-283 (590)
65 KOG0466|consensus 100.0 4.6E-29 1E-33 234.7 14.0 347 9-391 35-456 (466)
66 COG0532 InfB Translation initi 100.0 1.4E-27 3.1E-32 244.7 25.0 249 11-298 4-262 (509)
67 cd04166 CysN_ATPS CysN_ATPS su 100.0 8.1E-28 1.7E-32 230.3 20.3 182 14-200 1-203 (208)
68 KOG1145|consensus 100.0 1.3E-27 2.8E-32 241.6 21.9 248 11-296 152-405 (683)
69 PLN00116 translation elongatio 100.0 1.4E-26 2.9E-31 262.7 29.1 286 8-299 15-471 (843)
70 PTZ00416 elongation factor 2; 100.0 5.2E-26 1.1E-30 257.4 30.4 288 8-299 15-467 (836)
71 cd01885 EF2 EF2 (for archaea a 99.9 7.2E-26 1.6E-30 216.6 19.2 190 13-205 1-222 (222)
72 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.5E-25 3.2E-30 215.7 18.6 176 14-204 1-223 (224)
73 cd01888 eIF2_gamma eIF2-gamma 99.9 4.6E-25 9.9E-30 210.4 18.9 168 13-206 1-202 (203)
74 PRK08559 nusG transcription an 99.9 6.3E-25 1.4E-29 197.1 16.9 144 416-593 3-148 (153)
75 KOG0465|consensus 99.9 2.1E-25 4.6E-30 228.2 14.2 270 10-299 37-421 (721)
76 PRK14845 translation initiatio 99.9 1.8E-23 4E-28 235.5 27.3 243 25-296 474-781 (1049)
77 cd01889 SelB_euk SelB subfamil 99.9 9.1E-24 2E-28 200.1 20.9 172 13-206 1-189 (192)
78 cd01886 EF-G Elongation factor 99.9 1.5E-23 3.2E-28 207.2 20.0 128 14-142 1-130 (270)
79 cd01891 TypA_BipA TypA (tyrosi 99.9 3.3E-23 7.2E-28 196.6 21.1 189 12-205 2-194 (194)
80 cd04168 TetM_like Tet(M)-like 99.9 2.9E-23 6.2E-28 201.7 20.3 181 14-205 1-237 (237)
81 KOG0469|consensus 99.9 1.4E-23 3E-28 209.5 16.2 288 5-295 12-470 (842)
82 TIGR00405 L26e_arch ribosomal 99.9 8.7E-23 1.9E-27 182.9 16.2 140 422-593 1-140 (145)
83 cd04169 RF3 RF3 subfamily. Pe 99.9 3.9E-22 8.5E-27 197.0 20.7 131 12-143 2-138 (267)
84 cd04171 SelB SelB subfamily. 99.9 6.3E-22 1.4E-26 182.3 20.3 162 13-200 1-163 (164)
85 cd01890 LepA LepA subfamily. 99.9 7E-22 1.5E-26 185.0 20.0 174 13-205 1-179 (179)
86 cd04167 Snu114p Snu114p subfam 99.9 6.8E-22 1.5E-26 190.2 19.1 190 13-205 1-213 (213)
87 cd00881 GTP_translation_factor 99.9 1.7E-21 3.6E-26 183.8 20.8 180 14-205 1-189 (189)
88 KOG1144|consensus 99.9 4.5E-21 9.8E-26 199.5 17.0 235 11-272 474-773 (1064)
89 smart00738 NGN In Spt5p, this 99.9 3.6E-21 7.8E-26 163.5 13.3 105 420-525 1-105 (106)
90 cd04170 EF-G_bact Elongation f 99.8 9.9E-20 2.1E-24 181.5 19.8 128 14-142 1-130 (268)
91 KOG0467|consensus 99.8 1.7E-18 3.7E-23 181.9 25.0 171 9-180 6-204 (887)
92 KOG0464|consensus 99.8 5.8E-21 1.3E-25 186.9 5.7 272 11-299 36-419 (753)
93 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.1E-18 2.4E-23 161.4 18.8 159 14-201 2-164 (168)
94 PF02421 FeoB_N: Ferrous iron 99.8 2.3E-19 4.9E-24 160.4 12.4 148 13-198 1-156 (156)
95 PF02357 NusG: Transcription t 99.8 6.7E-20 1.5E-24 151.1 8.0 89 419-518 1-92 (92)
96 COG1160 Predicted GTPases [Gen 99.8 1.5E-18 3.2E-23 175.8 16.5 149 11-179 177-337 (444)
97 COG1159 Era GTPase [General fu 99.8 5.7E-18 1.2E-22 162.6 17.8 161 11-204 5-173 (298)
98 TIGR03594 GTPase_EngA ribosome 99.8 5.9E-18 1.3E-22 180.8 17.6 161 10-200 170-341 (429)
99 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.6E-18 1.2E-22 156.5 14.9 161 14-200 1-166 (167)
100 PRK00093 GTP-binding protein D 99.8 1.8E-17 3.9E-22 177.3 19.5 160 10-200 171-341 (435)
101 PRK15494 era GTPase Era; Provi 99.8 2.2E-17 4.7E-22 169.2 18.6 176 10-220 50-239 (339)
102 TIGR00436 era GTP-binding prot 99.8 2.8E-17 6.1E-22 163.8 18.6 156 14-204 2-165 (270)
103 KOG0468|consensus 99.8 1.1E-16 2.3E-21 165.5 23.0 134 7-141 123-262 (971)
104 COG1160 Predicted GTPases [Gen 99.7 5.4E-17 1.2E-21 164.6 17.7 153 13-203 4-165 (444)
105 cd01895 EngA2 EngA2 subfamily. 99.7 8.3E-17 1.8E-21 149.2 17.8 159 12-200 2-172 (174)
106 cd01894 EngA1 EngA1 subfamily. 99.7 4.6E-17 1E-21 148.5 15.2 148 16-201 1-156 (157)
107 cd03693 EF1_alpha_II EF1_alpha 99.7 2.5E-17 5.5E-22 134.8 11.2 89 210-300 2-90 (91)
108 cd04154 Arl2 Arl2 subfamily. 99.7 7.1E-17 1.5E-21 150.2 14.9 156 9-199 11-171 (173)
109 cd01864 Rab19 Rab19 subfamily. 99.7 1.3E-16 2.9E-21 147.1 16.4 157 11-201 2-164 (165)
110 PRK03003 GTP-binding protein D 99.7 1.7E-16 3.6E-21 170.5 18.5 160 11-201 210-380 (472)
111 cd01898 Obg Obg subfamily. Th 99.7 1.6E-16 3.5E-21 147.1 15.0 153 14-201 2-169 (170)
112 cd04124 RabL2 RabL2 subfamily. 99.7 3E-16 6.5E-21 144.1 16.4 154 13-202 1-157 (161)
113 TIGR03598 GTPase_YsxC ribosome 99.7 4.8E-16 1E-20 145.4 17.8 149 9-179 15-176 (179)
114 PRK00089 era GTPase Era; Revie 99.7 6.4E-16 1.4E-20 156.3 19.5 161 11-204 4-172 (292)
115 cd04157 Arl6 Arl6 subfamily. 99.7 2.5E-16 5.4E-21 144.6 14.9 154 14-200 1-161 (162)
116 cd01860 Rab5_related Rab5-rela 99.7 3.5E-16 7.5E-21 143.8 15.6 158 12-202 1-162 (163)
117 cd04149 Arf6 Arf6 subfamily. 99.7 3.4E-16 7.3E-21 144.8 15.4 156 10-200 7-167 (168)
118 TIGR03594 GTPase_EngA ribosome 99.7 5.8E-16 1.3E-20 165.4 18.9 153 14-204 1-161 (429)
119 cd04151 Arl1 Arl1 subfamily. 99.7 3.9E-16 8.4E-21 142.9 14.4 152 14-200 1-157 (158)
120 cd01865 Rab3 Rab3 subfamily. 99.7 4.8E-16 1E-20 143.4 15.1 157 13-202 2-162 (165)
121 KOG0092|consensus 99.7 2.7E-16 5.9E-21 140.3 12.7 165 10-206 3-170 (200)
122 cd03698 eRF3_II_like eRF3_II_l 99.7 2.4E-16 5.2E-21 126.8 11.2 83 212-297 1-83 (83)
123 cd04145 M_R_Ras_like M-Ras/R-R 99.7 6.6E-16 1.4E-20 142.1 15.8 156 11-201 1-162 (164)
124 cd04150 Arf1_5_like Arf1-Arf5- 99.7 4.9E-16 1.1E-20 142.4 14.7 153 13-200 1-158 (159)
125 cd04114 Rab30 Rab30 subfamily. 99.7 6.4E-16 1.4E-20 143.0 15.6 157 10-201 5-167 (169)
126 cd04106 Rab23_lke Rab23-like s 99.7 9.7E-16 2.1E-20 140.7 16.3 153 13-200 1-160 (162)
127 cd03694 GTPBP_II Domain II of 99.7 2.2E-16 4.8E-21 128.0 10.5 85 213-297 1-87 (87)
128 PLN00223 ADP-ribosylation fact 99.7 7.7E-16 1.7E-20 144.1 15.8 158 10-202 15-177 (181)
129 PRK04213 GTP-binding protein; 99.7 1.8E-15 4E-20 144.3 18.7 159 9-205 6-194 (201)
130 cd01897 NOG NOG1 is a nucleola 99.7 9.8E-16 2.1E-20 141.6 16.3 152 14-202 2-167 (168)
131 COG0218 Predicted GTPase [Gene 99.7 2.5E-15 5.4E-20 136.9 18.2 164 8-203 20-197 (200)
132 cd04113 Rab4 Rab4 subfamily. 99.7 7.8E-16 1.7E-20 141.3 14.6 153 13-200 1-159 (161)
133 PRK15467 ethanolamine utilizat 99.7 7.6E-16 1.7E-20 140.6 14.4 141 14-203 3-147 (158)
134 cd01862 Rab7 Rab7 subfamily. 99.7 1.3E-15 2.8E-20 141.4 16.0 156 13-202 1-166 (172)
135 cd03697 EFTU_II EFTU_II: Elong 99.7 2.2E-16 4.8E-21 128.2 9.4 87 213-299 1-87 (87)
136 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.1E-15 2.5E-20 141.0 15.3 158 12-202 2-163 (166)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.1E-15 2.5E-20 142.2 15.4 155 11-200 14-173 (174)
138 cd01861 Rab6 Rab6 subfamily. 99.7 2.3E-15 4.9E-20 138.1 16.9 154 13-201 1-160 (161)
139 smart00175 RAB Rab subfamily o 99.7 1.1E-15 2.3E-20 140.6 14.7 155 13-202 1-161 (164)
140 cd00878 Arf_Arl Arf (ADP-ribos 99.7 7.5E-16 1.6E-20 140.9 13.5 152 14-200 1-157 (158)
141 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.9E-15 4.2E-20 144.1 16.6 158 13-202 1-167 (201)
142 TIGR00231 small_GTP small GTP- 99.7 7.5E-16 1.6E-20 140.1 13.1 150 13-199 2-160 (161)
143 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.4E-15 3E-20 138.6 14.9 145 13-201 2-155 (157)
144 smart00177 ARF ARF-like small 99.7 1.7E-15 3.6E-20 141.1 15.6 158 10-202 11-173 (175)
145 PRK03003 GTP-binding protein D 99.7 3.1E-15 6.6E-20 160.7 19.8 156 11-204 37-200 (472)
146 cd04136 Rap_like Rap-like subf 99.7 1.3E-15 2.8E-20 139.9 14.7 155 13-201 2-161 (163)
147 PRK00454 engB GTP-binding prot 99.7 5.6E-15 1.2E-19 140.3 19.4 161 9-203 21-194 (196)
148 cd01866 Rab2 Rab2 subfamily. 99.7 1.7E-15 3.7E-20 140.1 15.5 159 11-202 3-165 (168)
149 PLN03110 Rab GTPase; Provision 99.7 1.7E-15 3.8E-20 145.9 16.0 166 2-202 2-173 (216)
150 cd01879 FeoB Ferrous iron tran 99.7 7.9E-16 1.7E-20 140.6 12.9 147 17-201 1-155 (158)
151 smart00173 RAS Ras subfamily o 99.7 1.3E-15 2.7E-20 140.3 14.4 156 13-202 1-161 (164)
152 cd01882 BMS1 Bms1. Bms1 is an 99.7 1.2E-14 2.6E-19 140.5 21.7 186 9-223 36-221 (225)
153 cd04119 RJL RJL (RabJ-Like) su 99.7 1.9E-15 4.1E-20 139.4 15.5 156 13-201 1-165 (168)
154 smart00178 SAR Sar1p-like memb 99.7 1.9E-15 4.2E-20 141.9 15.7 157 9-200 14-182 (184)
155 cd04122 Rab14 Rab14 subfamily. 99.7 2E-15 4.3E-20 139.4 15.5 156 12-200 2-161 (166)
156 KOG0094|consensus 99.7 9.5E-15 2.1E-19 130.3 18.9 171 5-207 15-189 (221)
157 cd04112 Rab26 Rab26 subfamily. 99.7 1.5E-15 3.3E-20 143.6 14.9 157 13-203 1-163 (191)
158 cd04120 Rab12 Rab12 subfamily. 99.7 2.4E-15 5.3E-20 142.6 16.3 156 13-202 1-162 (202)
159 cd01867 Rab8_Rab10_Rab13_like 99.7 2.4E-15 5.1E-20 139.0 15.8 157 12-201 3-163 (167)
160 cd00879 Sar1 Sar1 subfamily. 99.7 1.2E-15 2.7E-20 144.1 14.0 158 9-201 16-189 (190)
161 PRK09518 bifunctional cytidyla 99.7 2E-15 4.3E-20 169.7 18.0 161 11-202 449-620 (712)
162 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.7E-15 5.8E-20 137.6 15.8 154 13-201 2-160 (162)
163 cd04116 Rab9 Rab9 subfamily. 99.7 4.8E-15 1E-19 137.3 17.5 155 11-200 4-168 (170)
164 cd00154 Rab Rab family. Rab G 99.7 3E-15 6.5E-20 136.3 15.9 154 13-199 1-158 (159)
165 PTZ00369 Ras-like protein; Pro 99.7 2.1E-15 4.6E-20 142.3 15.1 160 10-203 3-167 (189)
166 cd04127 Rab27A Rab27a subfamil 99.7 3.7E-15 7.9E-20 139.5 16.4 158 11-201 3-175 (180)
167 cd04158 ARD1 ARD1 subfamily. 99.7 1.6E-15 3.5E-20 140.4 13.8 155 14-203 1-161 (169)
168 PTZ00133 ADP-ribosylation fact 99.6 2.9E-15 6.4E-20 140.3 15.6 158 10-202 15-177 (182)
169 cd01863 Rab18 Rab18 subfamily. 99.6 2.2E-15 4.9E-20 138.2 14.5 154 13-200 1-159 (161)
170 cd04163 Era Era subfamily. Er 99.6 8.8E-15 1.9E-19 134.5 18.3 157 12-201 3-167 (168)
171 cd04089 eRF3_II eRF3_II: domai 99.6 1.4E-15 3.1E-20 121.9 11.2 82 212-297 1-82 (82)
172 KOG0084|consensus 99.6 4E-15 8.8E-20 133.4 15.1 156 10-200 7-169 (205)
173 cd01893 Miro1 Miro1 subfamily. 99.6 4.9E-15 1.1E-19 136.8 16.4 158 13-201 1-162 (166)
174 cd04140 ARHI_like ARHI subfami 99.6 3.3E-15 7.2E-20 137.8 15.2 154 13-200 2-162 (165)
175 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.1E-15 6.7E-20 140.4 15.1 160 12-202 3-169 (183)
176 cd01868 Rab11_like Rab11-like. 99.6 4.6E-15 9.9E-20 136.7 16.0 155 12-201 3-163 (165)
177 cd04155 Arl3 Arl3 subfamily. 99.6 2.4E-15 5.2E-20 139.8 13.7 158 8-200 10-172 (173)
178 cd04175 Rap1 Rap1 subgroup. T 99.6 4.1E-15 9E-20 136.9 15.0 154 13-202 2-162 (164)
179 cd01878 HflX HflX subfamily. 99.6 4.2E-15 9.1E-20 142.2 15.5 152 10-201 39-203 (204)
180 cd04115 Rab33B_Rab33A Rab33B/R 99.6 7.6E-15 1.6E-19 136.1 16.7 159 12-202 2-168 (170)
181 cd04110 Rab35 Rab35 subfamily. 99.6 5.2E-15 1.1E-19 140.9 15.8 157 11-202 5-166 (199)
182 cd04176 Rap2 Rap2 subgroup. T 99.6 3.9E-15 8.4E-20 136.9 14.4 156 13-202 2-162 (163)
183 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 5.2E-15 1.1E-19 137.1 15.2 157 14-202 2-164 (170)
184 PRK09554 feoB ferrous iron tra 99.6 3.4E-15 7.3E-20 166.9 16.5 153 12-202 3-167 (772)
185 PRK00093 GTP-binding protein D 99.6 7.4E-15 1.6E-19 157.1 18.5 152 13-202 2-161 (435)
186 cd04109 Rab28 Rab28 subfamily. 99.6 7.3E-15 1.6E-19 141.6 16.6 157 13-203 1-166 (215)
187 PF03143 GTP_EFTU_D3: Elongati 99.6 1.7E-15 3.8E-20 125.9 10.4 87 301-392 2-96 (99)
188 PLN03118 Rab family protein; P 99.6 6.7E-15 1.5E-19 141.5 15.9 160 9-202 11-176 (211)
189 cd04161 Arl2l1_Arl13_like Arl2 99.6 4.7E-15 1E-19 137.0 14.1 159 14-200 1-166 (167)
190 COG2229 Predicted GTPase [Gene 99.6 1.7E-14 3.8E-19 128.3 16.8 165 10-201 8-176 (187)
191 cd04159 Arl10_like Arl10-like 99.6 6.1E-15 1.3E-19 134.4 14.6 152 15-200 2-158 (159)
192 cd00877 Ran Ran (Ras-related n 99.6 5.1E-15 1.1E-19 136.7 14.1 153 13-202 1-158 (166)
193 TIGR02528 EutP ethanolamine ut 99.6 3.6E-15 7.7E-20 133.9 12.7 136 14-199 2-141 (142)
194 cd04144 Ras2 Ras2 subfamily. 99.6 4.5E-15 9.9E-20 140.2 13.9 155 14-202 1-162 (190)
195 cd04156 ARLTS1 ARLTS1 subfamil 99.6 8.3E-15 1.8E-19 134.2 15.1 153 14-200 1-159 (160)
196 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.3E-14 2.8E-19 135.9 16.3 159 13-202 1-165 (182)
197 cd00157 Rho Rho (Ras homology) 99.6 5.3E-15 1.1E-19 137.1 13.6 158 13-200 1-170 (171)
198 cd04118 Rab24 Rab24 subfamily. 99.6 6.7E-15 1.5E-19 139.4 14.5 161 13-202 1-165 (193)
199 cd04121 Rab40 Rab40 subfamily. 99.6 9.9E-15 2.1E-19 137.1 15.4 156 11-201 5-165 (189)
200 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.4E-14 2.9E-19 133.4 15.8 156 13-201 1-162 (164)
201 TIGR03156 GTP_HflX GTP-binding 99.6 1.3E-14 2.7E-19 149.0 17.1 149 11-201 188-350 (351)
202 PRK12299 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.8E-19 147.6 17.0 157 12-203 158-328 (335)
203 PRK05291 trmE tRNA modificatio 99.6 4.7E-15 1E-19 157.6 14.2 149 11-203 214-370 (449)
204 cd03706 mtEFTU_III Domain III 99.6 8.8E-15 1.9E-19 120.6 12.7 91 303-393 2-92 (93)
205 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.8E-14 3.8E-19 134.2 16.3 156 13-200 2-172 (175)
206 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.5E-14 3.2E-19 134.3 15.6 157 12-202 2-163 (172)
207 cd00880 Era_like Era (E. coli 99.6 1.4E-14 3.1E-19 131.8 14.9 154 17-201 1-162 (163)
208 cd04123 Rab21 Rab21 subfamily. 99.6 1.2E-14 2.7E-19 133.1 14.6 154 13-201 1-160 (162)
209 PRK12298 obgE GTPase CgtA; Rev 99.6 1.6E-14 3.5E-19 149.8 17.0 157 13-203 160-333 (390)
210 PRK09518 bifunctional cytidyla 99.6 2.9E-14 6.4E-19 160.3 20.4 157 10-204 273-437 (712)
211 TIGR02729 Obg_CgtA Obg family 99.6 1.8E-14 3.9E-19 146.5 16.9 155 12-202 157-328 (329)
212 PF00025 Arf: ADP-ribosylation 99.6 9.8E-15 2.1E-19 135.8 13.3 158 9-201 11-174 (175)
213 cd04139 RalA_RalB RalA/RalB su 99.6 1.3E-14 2.8E-19 133.3 14.0 156 13-202 1-161 (164)
214 cd04111 Rab39 Rab39 subfamily. 99.6 2.4E-14 5.1E-19 137.4 16.3 157 12-202 2-165 (211)
215 cd04135 Tc10 TC10 subfamily. 99.6 1.5E-14 3.2E-19 134.6 14.4 156 13-200 1-171 (174)
216 cd04125 RabA_like RabA-like su 99.6 1.8E-14 3.8E-19 135.9 15.1 157 13-202 1-161 (188)
217 cd04147 Ras_dva Ras-dva subfam 99.6 2.8E-14 6.1E-19 135.7 16.5 156 14-203 1-163 (198)
218 cd03696 selB_II selB_II: this 99.6 6.4E-15 1.4E-19 118.6 10.2 82 213-296 1-82 (83)
219 cd01892 Miro2 Miro2 subfamily. 99.6 8.9E-15 1.9E-19 135.4 12.6 162 10-202 2-165 (169)
220 cd01871 Rac1_like Rac1-like su 99.6 3E-14 6.5E-19 132.5 16.0 156 12-200 1-172 (174)
221 cd04117 Rab15 Rab15 subfamily. 99.6 2.5E-14 5.3E-19 131.4 15.1 153 13-200 1-159 (161)
222 cd01875 RhoG RhoG subfamily. 99.6 7.5E-14 1.6E-18 131.9 18.8 160 12-204 3-178 (191)
223 PRK12296 obgE GTPase CgtA; Rev 99.6 3.4E-14 7.4E-19 149.7 17.8 157 11-203 158-340 (500)
224 PLN03071 GTP-binding nuclear p 99.6 2.4E-14 5.2E-19 138.1 15.2 158 10-202 11-171 (219)
225 cd04142 RRP22 RRP22 subfamily. 99.6 6.2E-14 1.3E-18 133.0 17.6 156 13-202 1-173 (198)
226 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.6E-14 3.4E-19 133.0 13.1 156 15-199 2-162 (164)
227 cd04134 Rho3 Rho3 subfamily. 99.6 3.3E-14 7.1E-19 134.2 15.5 161 13-204 1-175 (189)
228 PLN03108 Rab family protein; P 99.6 3.5E-14 7.7E-19 136.2 15.8 159 11-202 5-167 (210)
229 cd01876 YihA_EngB The YihA (En 99.6 9.4E-14 2E-18 127.9 17.9 155 15-201 2-169 (170)
230 cd03707 EFTU_III Domain III of 99.6 2.3E-14 5E-19 117.4 12.2 89 303-391 2-90 (90)
231 cd04177 RSR1 RSR1 subgroup. R 99.6 2.3E-14 4.9E-19 132.6 13.5 157 13-202 2-163 (168)
232 cd04132 Rho4_like Rho4-like su 99.6 2.9E-14 6.3E-19 134.3 14.3 159 13-202 1-166 (187)
233 smart00174 RHO Rho (Ras homolo 99.6 4E-14 8.6E-19 131.7 14.8 156 15-201 1-170 (174)
234 cd04133 Rop_like Rop subfamily 99.6 3E-14 6.4E-19 132.4 13.7 160 13-202 2-172 (176)
235 cd04143 Rhes_like Rhes_like su 99.6 3.5E-14 7.7E-19 139.0 14.8 161 13-206 1-174 (247)
236 cd01881 Obg_like The Obg-like 99.6 2.8E-14 6E-19 132.8 13.5 149 17-200 1-174 (176)
237 PF10662 PduV-EutP: Ethanolami 99.6 2.8E-14 6.1E-19 124.6 12.2 136 14-199 3-142 (143)
238 cd04126 Rab20 Rab20 subfamily. 99.6 3.6E-14 7.7E-19 136.2 14.1 159 13-201 1-188 (220)
239 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4.4E-14 9.6E-19 149.2 16.0 137 10-177 201-345 (442)
240 cd01870 RhoA_like RhoA-like su 99.6 5.9E-14 1.3E-18 130.6 15.2 158 13-200 2-172 (175)
241 cd04148 RGK RGK subfamily. Th 99.6 3.9E-14 8.5E-19 136.8 14.3 157 13-203 1-163 (221)
242 cd00876 Ras Ras family. The R 99.6 6.2E-14 1.3E-18 128.1 14.9 152 14-201 1-159 (160)
243 cd03695 CysN_NodQ_II CysN_NodQ 99.6 3.2E-14 7E-19 113.5 11.1 81 213-297 1-81 (81)
244 PRK12297 obgE GTPase CgtA; Rev 99.6 6.2E-14 1.3E-18 146.1 16.5 152 13-203 159-327 (424)
245 cd04137 RheB Rheb (Ras Homolog 99.6 5.6E-14 1.2E-18 131.5 14.6 156 13-202 2-162 (180)
246 cd04146 RERG_RasL11_like RERG/ 99.6 4.1E-14 8.8E-19 130.4 12.5 155 14-201 1-162 (165)
247 COG0486 ThdF Predicted GTPase 99.5 6.3E-14 1.4E-18 142.8 14.7 154 11-204 216-377 (454)
248 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.8E-14 8.2E-19 131.8 12.0 155 13-199 1-170 (173)
249 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 3.8E-13 8.2E-18 125.7 18.2 159 9-200 2-177 (182)
250 KOG0098|consensus 99.5 1.1E-13 2.3E-18 122.6 13.3 155 11-199 5-164 (216)
251 COG0370 FeoB Fe2+ transport sy 99.5 8.8E-14 1.9E-18 147.7 15.2 151 12-203 3-164 (653)
252 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 2.1E-13 4.6E-18 131.6 16.6 161 9-200 10-185 (232)
253 cd03704 eRF3c_III This family 99.5 8.7E-14 1.9E-18 118.2 12.1 85 303-391 2-105 (108)
254 PRK11058 GTPase HflX; Provisio 99.5 1E-13 2.2E-18 145.6 15.3 151 13-203 198-362 (426)
255 KOG0394|consensus 99.5 1.3E-13 2.8E-18 121.8 13.4 158 8-199 5-174 (210)
256 cd04131 Rnd Rnd subfamily. Th 99.5 2E-13 4.4E-18 127.3 14.1 157 13-200 2-173 (178)
257 cd04105 SR_beta Signal recogni 99.5 5.2E-13 1.1E-17 127.2 16.9 126 14-157 2-141 (203)
258 TIGR00437 feoB ferrous iron tr 99.5 1.4E-13 2.9E-18 150.7 14.1 145 19-201 1-153 (591)
259 KOG0078|consensus 99.5 6.6E-13 1.4E-17 121.2 16.2 156 10-200 10-171 (207)
260 smart00176 RAN Ran (Ras-relate 99.5 2.1E-13 4.6E-18 129.1 13.4 150 18-202 1-153 (200)
261 cd03705 EF1_alpha_III Domain I 99.5 2.1E-13 4.5E-18 115.1 11.7 84 303-391 2-104 (104)
262 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1E-12 2.2E-17 126.3 17.9 157 13-200 2-173 (222)
263 KOG0095|consensus 99.5 6.4E-13 1.4E-17 112.7 13.6 160 10-202 5-168 (213)
264 cd00882 Ras_like_GTPase Ras-li 99.5 3.3E-13 7.2E-18 121.3 12.6 148 17-199 1-156 (157)
265 cd01896 DRG The developmentall 99.5 1.2E-12 2.7E-17 127.1 16.8 82 14-111 2-90 (233)
266 KOG1423|consensus 99.5 2E-12 4.4E-17 123.5 16.8 171 7-203 67-271 (379)
267 PF00071 Ras: Ras family; Int 99.5 7.3E-13 1.6E-17 121.6 13.3 155 14-200 1-158 (162)
268 cd01513 Translation_factor_III 99.5 5.6E-13 1.2E-17 112.2 11.5 84 303-391 2-102 (102)
269 KOG0080|consensus 99.5 8E-13 1.7E-17 113.8 12.3 147 10-179 9-160 (209)
270 KOG0073|consensus 99.5 1.8E-12 3.9E-17 112.4 14.3 154 11-200 15-175 (185)
271 cd03708 GTPBP_III Domain III o 99.5 5.6E-13 1.2E-17 108.5 10.5 83 303-392 2-85 (87)
272 cd04094 selB_III This family r 99.4 1.7E-12 3.6E-17 107.8 12.9 95 292-391 1-97 (97)
273 COG2262 HflX GTPases [General 99.4 1.1E-12 2.4E-17 131.3 13.4 155 9-203 189-356 (411)
274 cd04093 HBS1_C HBS1_C: this fa 99.4 1.5E-12 3.3E-17 110.5 11.8 85 303-392 2-105 (107)
275 cd04104 p47_IIGP_like p47 (47- 99.4 3.7E-12 8.1E-17 120.8 15.5 165 13-205 2-186 (197)
276 cd04103 Centaurin_gamma Centau 99.4 2.2E-12 4.9E-17 117.8 13.0 149 13-200 1-156 (158)
277 PTZ00132 GTP-binding nuclear p 99.4 4.6E-12 1E-16 122.1 15.9 160 8-202 5-167 (215)
278 KOG0087|consensus 99.4 2.6E-12 5.5E-17 116.7 12.9 141 11-179 13-162 (222)
279 KOG0076|consensus 99.4 1.4E-12 3E-17 114.3 10.8 172 6-203 11-187 (197)
280 cd04129 Rho2 Rho2 subfamily. 99.4 2.2E-12 4.9E-17 121.4 12.7 157 13-201 2-171 (187)
281 PF01926 MMR_HSR1: 50S ribosom 99.4 1.7E-12 3.8E-17 112.0 10.8 107 14-137 1-116 (116)
282 KOG0086|consensus 99.4 7.6E-12 1.6E-16 106.8 14.2 146 12-179 9-157 (214)
283 KOG1489|consensus 99.4 3.5E-12 7.6E-17 122.7 13.6 153 11-200 195-364 (366)
284 PRK09866 hypothetical protein; 99.4 7.1E-12 1.5E-16 132.6 16.9 115 74-201 229-351 (741)
285 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 5.1E-12 1.1E-16 119.9 14.0 166 13-203 1-184 (196)
286 KOG0070|consensus 99.4 1.3E-12 2.8E-17 116.7 9.1 162 7-203 12-178 (181)
287 COG5192 BMS1 GTP-binding prote 99.4 4.9E-11 1.1E-15 121.9 19.3 216 9-253 66-293 (1077)
288 COG3596 Predicted GTPase [Gene 99.3 1.2E-11 2.5E-16 117.6 13.4 167 7-205 34-224 (296)
289 cd01873 RhoBTB RhoBTB subfamil 99.3 1.2E-11 2.7E-16 116.8 13.5 158 12-200 2-193 (195)
290 PF09439 SRPRB: Signal recogni 99.3 8.4E-12 1.8E-16 114.2 11.0 126 13-158 4-145 (181)
291 COG1084 Predicted GTPase [Gene 99.3 1.6E-11 3.4E-16 119.4 12.9 116 12-144 168-296 (346)
292 PLN00023 GTP-binding protein; 99.3 1.5E-11 3.2E-16 122.1 13.1 142 8-164 17-190 (334)
293 PRK13768 GTPase; Provisional 99.3 4.4E-11 9.5E-16 117.6 15.8 174 13-203 3-247 (253)
294 KOG0075|consensus 99.3 9.9E-12 2.1E-16 105.6 9.3 159 10-202 18-181 (186)
295 KOG0079|consensus 99.3 1.5E-11 3.3E-16 104.4 10.3 155 13-200 9-166 (198)
296 KOG0093|consensus 99.3 1.4E-11 3E-16 104.6 9.7 155 13-201 22-181 (193)
297 cd01850 CDC_Septin CDC/Septin. 99.3 1E-10 2.2E-15 116.4 17.4 151 11-175 3-184 (276)
298 cd04102 RabL3 RabL3 (Rab-like3 99.3 5.6E-11 1.2E-15 112.6 14.6 146 13-178 1-175 (202)
299 PRK09435 membrane ATPase/prote 99.3 6.2E-11 1.3E-15 119.7 15.3 176 9-203 53-260 (332)
300 PF03029 ATP_bind_1: Conserved 99.3 3.5E-11 7.5E-16 116.8 12.7 169 17-201 1-235 (238)
301 KOG1191|consensus 99.3 1.7E-11 3.6E-16 124.8 10.5 162 10-202 266-449 (531)
302 cd04095 CysN_NoDQ_III TCysN_No 99.3 3.2E-11 6.9E-16 101.5 10.5 83 303-391 2-103 (103)
303 KOG0090|consensus 99.3 6.9E-11 1.5E-15 107.6 13.0 161 11-201 37-237 (238)
304 PF08477 Miro: Miro-like prote 99.3 1.2E-11 2.6E-16 107.2 7.3 113 14-139 1-119 (119)
305 cd03688 eIF2_gamma_II eIF2_gam 99.2 8.8E-11 1.9E-15 96.2 11.4 90 209-298 2-112 (113)
306 COG1100 GTPase SAR1 and relate 99.2 3.4E-10 7.3E-15 109.4 16.4 117 11-144 4-127 (219)
307 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 7.3E-10 1.6E-14 106.2 17.3 160 14-202 1-175 (232)
308 KOG0091|consensus 99.2 2.3E-10 5E-15 99.1 11.9 145 12-179 8-159 (213)
309 KOG0071|consensus 99.2 4.1E-10 8.8E-15 95.1 12.9 159 10-203 15-178 (180)
310 COG0536 Obg Predicted GTPase [ 99.2 4.6E-10 1E-14 109.7 14.0 154 13-203 160-333 (369)
311 COG1163 DRG Predicted GTPase [ 99.2 3.4E-10 7.4E-15 109.7 12.3 86 10-111 61-153 (365)
312 PF03308 ArgK: ArgK protein; 99.1 3.9E-10 8.5E-15 107.4 10.5 171 7-201 24-228 (266)
313 cd01899 Ygr210 Ygr210 subfamil 99.1 1.9E-09 4E-14 109.0 16.0 88 15-110 1-111 (318)
314 cd03692 mtIF2_IVc mtIF2_IVc: t 99.1 1.1E-09 2.4E-14 88.0 11.5 79 215-295 3-82 (84)
315 KOG0097|consensus 99.1 1.4E-09 3E-14 91.7 12.0 144 11-180 10-160 (215)
316 KOG1532|consensus 99.1 7E-10 1.5E-14 104.6 10.7 177 9-201 16-262 (366)
317 KOG0081|consensus 99.1 8.5E-11 1.8E-15 101.1 4.0 161 13-201 10-183 (219)
318 COG4917 EutP Ethanolamine util 99.1 9.4E-10 2E-14 91.3 9.7 137 14-200 3-143 (148)
319 KOG0088|consensus 99.1 8.4E-10 1.8E-14 95.0 9.7 160 9-201 10-173 (218)
320 PTZ00099 rab6; Provisional 99.1 1.3E-09 2.7E-14 101.3 11.6 113 73-204 27-143 (176)
321 cd01853 Toc34_like Toc34-like 99.1 6.1E-09 1.3E-13 101.7 16.7 120 9-143 28-164 (249)
322 COG0378 HypB Ni2+-binding GTPa 99.0 1.2E-09 2.5E-14 99.2 9.8 165 12-201 13-199 (202)
323 COG1703 ArgK Putative periplas 99.0 5.5E-09 1.2E-13 100.8 14.9 178 7-202 46-253 (323)
324 KOG0072|consensus 99.0 4.2E-10 9.2E-15 95.4 6.1 158 11-202 17-178 (182)
325 KOG0074|consensus 99.0 2.1E-09 4.5E-14 91.0 9.7 147 8-179 13-165 (185)
326 PRK09602 translation-associate 99.0 1.2E-08 2.7E-13 106.2 16.5 81 13-109 2-113 (396)
327 KOG0083|consensus 99.0 2.5E-10 5.4E-15 95.3 3.1 142 17-182 2-149 (192)
328 TIGR00750 lao LAO/AO transport 99.0 1.5E-08 3.3E-13 102.4 16.7 174 9-201 31-236 (300)
329 TIGR02836 spore_IV_A stage IV 99.0 5.1E-09 1.1E-13 105.7 12.7 157 7-178 12-220 (492)
330 KOG4252|consensus 99.0 4E-10 8.6E-15 99.1 4.2 146 11-179 19-167 (246)
331 PF05049 IIGP: Interferon-indu 99.0 9.1E-09 2E-13 104.6 14.3 165 10-205 33-220 (376)
332 PF04548 AIG1: AIG1 family; I 98.9 1.1E-08 2.3E-13 98.2 13.2 166 13-202 1-185 (212)
333 TIGR00073 hypB hydrogenase acc 98.9 1.1E-08 2.3E-13 97.9 12.8 168 8-201 18-205 (207)
334 PRK10463 hydrogenase nickel in 98.9 5E-09 1.1E-13 103.1 10.1 168 8-200 100-286 (290)
335 KOG0395|consensus 98.9 8.9E-09 1.9E-13 96.9 11.5 156 11-201 2-163 (196)
336 KOG0077|consensus 98.9 8E-09 1.7E-13 90.2 9.9 114 10-143 18-136 (193)
337 TIGR00101 ureG urease accessor 98.9 1.5E-08 3.2E-13 95.9 12.0 165 13-202 2-195 (199)
338 PF03144 GTP_EFTU_D2: Elongati 98.9 2.1E-08 4.6E-13 78.8 10.2 70 227-296 1-74 (74)
339 PF00350 Dynamin_N: Dynamin fa 98.9 8.2E-09 1.8E-13 95.3 9.0 65 74-138 100-168 (168)
340 cd01342 Translation_Factor_II_ 98.8 4.3E-08 9.3E-13 78.3 11.1 82 213-296 1-82 (83)
341 TIGR00991 3a0901s02IAP34 GTP-b 98.8 1.3E-07 2.8E-12 93.8 15.6 119 9-142 35-167 (313)
342 PRK09601 GTP-binding protein Y 98.8 1.4E-07 3.1E-12 96.0 14.8 82 13-110 3-108 (364)
343 smart00053 DYNc Dynamin, GTPas 98.7 9.3E-08 2E-12 92.4 11.5 69 74-143 124-207 (240)
344 PF14578 GTP_EFTU_D4: Elongati 98.7 2.9E-07 6.3E-12 71.7 11.9 77 211-295 3-79 (81)
345 KOG2486|consensus 98.7 8.7E-08 1.9E-12 91.2 8.9 150 10-178 134-301 (320)
346 PF00735 Septin: Septin; Inte 98.6 5.8E-07 1.3E-11 89.5 14.1 143 12-163 4-176 (281)
347 KOG3883|consensus 98.6 5.9E-07 1.3E-11 77.4 11.9 167 11-212 8-184 (198)
348 KOG0410|consensus 98.6 2.5E-07 5.5E-12 89.7 10.0 148 11-202 177-340 (410)
349 KOG3886|consensus 98.5 2.9E-07 6.2E-12 85.1 8.7 145 12-177 4-163 (295)
350 TIGR00993 3a0901s04IAP86 chlor 98.5 2E-06 4.4E-11 92.2 15.7 116 12-142 118-250 (763)
351 PTZ00258 GTP-binding protein; 98.5 4.4E-07 9.6E-12 93.6 9.7 85 9-109 18-126 (390)
352 KOG1673|consensus 98.5 1.5E-06 3.3E-11 75.0 10.9 149 10-179 18-172 (205)
353 COG5019 CDC3 Septin family pro 98.5 8.9E-06 1.9E-10 81.2 17.4 148 9-171 20-199 (373)
354 KOG0393|consensus 98.5 5.3E-07 1.1E-11 83.2 8.1 155 11-197 3-173 (198)
355 cd01900 YchF YchF subfamily. 98.5 3.9E-07 8.4E-12 89.9 7.7 80 15-110 1-104 (274)
356 cd03690 Tet_II Tet_II: This su 98.4 1.7E-06 3.6E-11 69.7 9.5 80 210-296 1-84 (85)
357 cd03691 BipA_TypA_II BipA_TypA 98.4 5.3E-06 1.1E-10 67.1 11.0 80 213-296 1-85 (86)
358 PRK10416 signal recognition pa 98.4 7.4E-06 1.6E-10 83.1 14.4 127 11-142 113-273 (318)
359 KOG1490|consensus 98.3 9.2E-07 2E-11 90.6 7.2 146 11-178 167-326 (620)
360 KOG1534|consensus 98.3 3.9E-06 8.4E-11 76.7 10.1 128 13-143 4-179 (273)
361 cd04092 mtEFG2_II_like mtEFG2_ 98.3 5.1E-06 1.1E-10 66.7 9.9 78 214-297 2-83 (83)
362 PRK14974 cell division protein 98.3 7.4E-06 1.6E-10 83.3 13.1 128 10-143 138-294 (336)
363 KOG1707|consensus 98.3 5.5E-06 1.2E-10 86.7 12.0 120 7-143 4-130 (625)
364 cd03699 lepA_II lepA_II: This 98.3 8.3E-06 1.8E-10 65.9 10.5 82 213-297 1-86 (86)
365 KOG3905|consensus 98.3 8.6E-06 1.9E-10 79.1 12.2 160 13-201 53-288 (473)
366 cd04088 EFG_mtEFG_II EFG_mtEFG 98.3 6.2E-06 1.3E-10 66.2 9.7 78 214-297 2-83 (83)
367 TIGR01425 SRP54_euk signal rec 98.3 5.3E-06 1.2E-10 86.5 11.5 127 10-142 98-253 (429)
368 KOG1547|consensus 98.3 3.9E-05 8.5E-10 71.6 15.6 151 10-176 44-226 (336)
369 cd01859 MJ1464 MJ1464. This f 98.3 6.9E-06 1.5E-10 74.7 10.8 87 96-203 10-96 (156)
370 KOG0448|consensus 98.3 9.7E-06 2.1E-10 86.4 12.9 100 76-177 207-310 (749)
371 COG0012 Predicted GTPase, prob 98.2 1.6E-05 3.4E-10 80.0 13.1 91 12-110 2-109 (372)
372 PF00448 SRP54: SRP54-type pro 98.2 5.8E-06 1.3E-10 77.9 9.4 126 13-143 2-155 (196)
373 cd03689 RF3_II RF3_II: this su 98.2 1.3E-05 2.9E-10 64.4 10.0 75 217-297 3-84 (85)
374 TIGR00064 ftsY signal recognit 98.2 1.4E-05 3E-10 79.4 12.0 128 10-143 70-232 (272)
375 PRK14722 flhF flagellar biosyn 98.2 9.7E-06 2.1E-10 83.3 10.9 130 12-143 137-296 (374)
376 cd03115 SRP The signal recogni 98.2 2.1E-05 4.5E-10 72.9 12.0 124 14-143 2-154 (173)
377 PRK11889 flhF flagellar biosyn 98.2 1.4E-05 3.1E-10 81.5 11.3 127 12-143 241-392 (436)
378 cd04091 mtEFG1_II_like mtEFG1_ 98.1 2E-05 4.2E-10 62.9 9.4 74 215-296 3-80 (81)
379 KOG1533|consensus 98.1 1.3E-05 2.8E-10 74.7 9.3 127 13-142 3-177 (290)
380 KOG2655|consensus 98.1 5.2E-05 1.1E-09 76.5 14.1 142 11-162 20-191 (366)
381 cd01858 NGP_1 NGP-1. Autoanti 98.1 4E-06 8.7E-11 76.4 5.8 56 11-84 101-156 (157)
382 KOG1486|consensus 98.1 7E-06 1.5E-10 77.0 7.2 87 10-112 60-153 (364)
383 cd01856 YlqF YlqF. Proteins o 98.1 1.6E-05 3.5E-10 73.5 9.7 99 82-203 2-101 (171)
384 PF00467 KOW: KOW motif; Inte 98.1 6.9E-06 1.5E-10 52.5 4.9 31 542-572 1-31 (32)
385 cd01855 YqeH YqeH. YqeH is an 98.1 1.9E-05 4.2E-10 74.4 10.0 106 83-203 19-125 (190)
386 cd00066 G-alpha G protein alph 98.1 6.4E-05 1.4E-09 76.6 14.3 75 66-141 152-241 (317)
387 cd04178 Nucleostemin_like Nucl 98.0 6.6E-06 1.4E-10 75.8 5.4 56 11-84 116-171 (172)
388 KOG1954|consensus 98.0 8E-05 1.7E-09 73.8 12.4 133 14-147 60-230 (532)
389 cd01858 NGP_1 NGP-1. Autoanti 98.0 4.2E-05 9E-10 69.6 9.9 90 93-202 3-94 (157)
390 PF03193 DUF258: Protein of un 98.0 6E-06 1.3E-10 74.3 4.1 66 13-89 36-101 (161)
391 PF03439 Spt5-NGN: Early trans 98.0 1.1E-05 2.5E-10 64.5 5.2 80 421-523 2-83 (84)
392 PRK00771 signal recognition pa 98.0 5.6E-05 1.2E-09 79.7 11.5 127 10-142 93-246 (437)
393 TIGR03596 GTPase_YlqF ribosome 97.9 4.3E-05 9.2E-10 76.4 9.8 99 82-203 4-103 (276)
394 smart00275 G_alpha G protein a 97.9 4.6E-05 9.9E-10 78.3 10.1 77 65-142 174-265 (342)
395 cd03114 ArgK-like The function 97.9 4.5E-05 9.7E-10 68.5 8.8 59 73-139 90-148 (148)
396 PRK10867 signal recognition pa 97.9 8.3E-05 1.8E-09 78.2 11.5 127 10-142 98-254 (433)
397 cd01849 YlqF_related_GTPase Yl 97.9 7.3E-05 1.6E-09 67.9 9.8 82 100-201 1-83 (155)
398 PRK12727 flagellar biosynthesi 97.9 0.00032 7E-09 74.6 15.4 128 11-142 349-498 (559)
399 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 9E-05 2E-09 66.1 9.7 79 90-179 3-83 (141)
400 COG3640 CooC CO dehydrogenase 97.8 5.9E-05 1.3E-09 70.8 8.2 66 73-141 132-198 (255)
401 PRK12726 flagellar biosynthesi 97.8 7.4E-05 1.6E-09 76.2 9.6 128 10-142 204-356 (407)
402 COG0541 Ffh Signal recognition 97.8 0.00011 2.4E-09 75.1 10.8 127 9-142 97-253 (451)
403 cd01849 YlqF_related_GTPase Yl 97.8 2.4E-05 5.2E-10 71.1 5.5 57 10-84 98-154 (155)
404 cd03700 eEF2_snRNP_like_II EF2 97.8 0.00022 4.7E-09 58.5 10.6 78 215-296 3-92 (93)
405 cd03110 Fer4_NifH_child This p 97.8 0.00026 5.5E-09 66.0 12.4 82 73-163 91-172 (179)
406 cd01851 GBP Guanylate-binding 97.8 5.1E-05 1.1E-09 73.3 7.7 92 9-110 4-103 (224)
407 TIGR00959 ffh signal recogniti 97.8 0.0001 2.2E-09 77.5 10.4 127 10-142 97-253 (428)
408 KOG0096|consensus 97.8 7E-05 1.5E-09 67.5 7.7 140 10-178 8-154 (216)
409 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.7E-05 5.9E-10 69.5 5.0 54 14-85 85-138 (141)
410 TIGR00157 ribosome small subun 97.8 7.6E-05 1.6E-09 73.1 8.6 86 94-199 32-119 (245)
411 PRK06731 flhF flagellar biosyn 97.8 0.00018 3.9E-09 71.0 11.0 128 11-143 74-226 (270)
412 PRK09563 rbgA GTPase YlqF; Rev 97.8 8.8E-05 1.9E-09 74.6 9.0 99 82-203 7-106 (287)
413 KOG0780|consensus 97.8 0.00015 3.2E-09 72.6 10.2 127 12-141 101-253 (483)
414 cd01855 YqeH YqeH. YqeH is an 97.8 2.9E-05 6.4E-10 73.1 4.9 62 13-84 128-189 (190)
415 PRK14721 flhF flagellar biosyn 97.8 0.00014 3E-09 76.0 10.2 130 11-143 190-341 (420)
416 PRK12289 GTPase RsgA; Reviewed 97.7 0.00021 4.5E-09 73.4 10.6 83 96-199 87-171 (352)
417 PF05783 DLIC: Dynein light in 97.7 0.00028 6E-09 75.0 11.4 61 126-202 195-263 (472)
418 cd04090 eEF2_II_snRNP Loc2 eEF 97.7 0.00047 1E-08 56.7 10.4 70 214-285 2-83 (94)
419 PRK12723 flagellar biosynthesi 97.7 0.00018 4E-09 74.6 9.7 129 12-143 174-327 (388)
420 PRK12724 flagellar biosynthesi 97.7 0.00012 2.6E-09 75.9 8.2 127 12-143 223-374 (432)
421 PF02492 cobW: CobW/HypB/UreG, 97.7 0.00014 3E-09 67.7 8.0 69 74-144 84-157 (178)
422 KOG3887|consensus 97.7 0.00011 2.3E-09 68.8 7.0 149 14-177 29-187 (347)
423 PRK09563 rbgA GTPase YlqF; Rev 97.7 7.7E-05 1.7E-09 75.0 6.7 58 10-85 119-176 (287)
424 cd02036 MinD Bacterial cell di 97.7 0.00032 6.9E-09 65.2 10.4 124 15-142 2-128 (179)
425 cd01856 YlqF YlqF. Proteins o 97.7 8.1E-05 1.8E-09 68.8 6.1 57 11-85 114-170 (171)
426 TIGR00092 GTP-binding protein 97.7 0.00012 2.5E-09 75.0 7.6 90 13-110 3-109 (368)
427 TIGR03596 GTPase_YlqF ribosome 97.6 7.6E-05 1.7E-09 74.6 6.0 58 10-85 116-173 (276)
428 TIGR03597 GTPase_YqeH ribosome 97.6 0.00029 6.3E-09 73.1 10.5 102 85-201 50-151 (360)
429 smart00739 KOW KOW (Kyprides, 97.6 7.3E-05 1.6E-09 46.2 3.7 26 540-565 2-27 (28)
430 COG1419 FlhF Flagellar GTP-bin 97.6 0.00025 5.4E-09 72.5 9.4 130 11-143 202-353 (407)
431 PRK00098 GTPase RsgA; Reviewed 97.6 0.00029 6.3E-09 71.2 9.8 83 96-198 78-162 (298)
432 cd03112 CobW_like The function 97.6 0.00015 3.2E-09 66.0 6.9 21 15-35 3-23 (158)
433 PRK12288 GTPase RsgA; Reviewed 97.6 5.7E-05 1.2E-09 77.5 4.3 64 14-88 207-270 (347)
434 TIGR00487 IF-2 translation ini 97.6 0.0018 3.9E-08 71.3 16.2 182 80-296 392-575 (587)
435 KOG4423|consensus 97.6 2.6E-05 5.7E-10 69.8 1.4 143 13-178 26-179 (229)
436 COG1161 Predicted GTPases [Gen 97.6 9.7E-05 2.1E-09 75.3 5.6 57 10-84 130-186 (322)
437 TIGR00157 ribosome small subun 97.6 9.3E-05 2E-09 72.5 5.1 63 13-87 121-183 (245)
438 COG1162 Predicted GTPases [Gen 97.5 7.6E-05 1.7E-09 73.4 4.4 64 14-88 166-229 (301)
439 PRK05703 flhF flagellar biosyn 97.5 0.00058 1.3E-08 72.2 10.9 127 13-143 222-372 (424)
440 CHL00189 infB translation init 97.5 0.0037 8E-08 70.1 17.5 181 80-296 549-731 (742)
441 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00054 1.2E-08 68.9 10.1 82 96-198 76-159 (287)
442 PRK06995 flhF flagellar biosyn 97.5 0.00041 8.9E-09 73.7 9.6 127 13-142 257-405 (484)
443 PRK14723 flhF flagellar biosyn 97.5 0.00027 5.8E-09 78.7 8.4 128 13-143 186-338 (767)
444 cd03111 CpaE_like This protein 97.5 0.00089 1.9E-08 56.4 9.7 100 15-137 2-106 (106)
445 PRK05306 infB translation init 97.5 0.0043 9.4E-08 70.2 17.9 182 80-296 594-777 (787)
446 KOG1491|consensus 97.5 0.00023 5E-09 70.2 6.7 89 6-110 14-126 (391)
447 PRK12289 GTPase RsgA; Reviewed 97.4 0.00012 2.6E-09 75.1 4.4 22 14-35 174-195 (352)
448 cd02038 FleN-like FleN is a me 97.4 0.0016 3.4E-08 57.9 10.9 105 17-141 5-110 (139)
449 KOG1487|consensus 97.4 0.00042 9.1E-09 65.6 7.2 83 13-111 60-149 (358)
450 cd02037 MRP-like MRP (Multiple 97.4 0.00052 1.1E-08 63.3 7.9 127 15-141 2-134 (169)
451 KOG2485|consensus 97.4 0.0004 8.7E-09 67.9 7.0 66 9-84 140-205 (335)
452 PF09547 Spore_IV_A: Stage IV 97.4 0.0038 8.1E-08 64.0 14.0 160 7-178 12-220 (492)
453 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00023 5.1E-09 71.5 5.1 65 13-88 162-226 (287)
454 cd01859 MJ1464 MJ1464. This f 97.3 0.00034 7.4E-09 63.5 5.7 24 11-34 100-123 (156)
455 PRK13796 GTPase YqeH; Provisio 97.3 0.00022 4.7E-09 74.2 4.9 60 13-85 161-220 (365)
456 PRK01889 GTPase RsgA; Reviewed 97.3 0.0013 2.7E-08 68.2 10.3 82 96-198 110-192 (356)
457 TIGR03597 GTPase_YqeH ribosome 97.3 0.00026 5.6E-09 73.5 5.2 60 13-85 155-214 (360)
458 KOG0082|consensus 97.3 0.0018 4E-08 65.5 10.9 83 59-142 179-276 (354)
459 PRK13796 GTPase YqeH; Provisio 97.3 0.0018 3.8E-08 67.4 11.1 99 87-201 58-157 (365)
460 COG0532 InfB Translation initi 97.3 0.014 3.1E-07 61.6 17.1 104 190-296 392-496 (509)
461 COG0523 Putative GTPases (G3E 97.2 0.003 6.4E-08 64.1 11.4 94 74-176 84-185 (323)
462 PRK12288 GTPase RsgA; Reviewed 97.2 0.0033 7.1E-08 64.7 11.2 87 96-200 118-205 (347)
463 COG0552 FtsY Signal recognitio 97.1 0.0023 5.1E-08 63.6 9.5 128 9-141 136-297 (340)
464 KOG1999|consensus 97.1 0.0044 9.4E-08 68.8 12.3 129 416-574 162-293 (1024)
465 CHL00141 rpl24 ribosomal prote 97.1 0.0009 1.9E-08 53.0 4.9 36 538-573 7-42 (83)
466 PRK12281 rplX 50S ribosomal pr 97.1 0.00095 2.1E-08 51.9 4.9 36 538-573 5-40 (76)
467 PRK11537 putative GTP-binding 97.1 0.0072 1.6E-07 61.5 12.6 88 75-174 91-186 (318)
468 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0041 8.8E-08 50.8 9.1 71 15-113 2-73 (99)
469 PHA02518 ParA-like protein; Pr 97.1 0.0093 2E-07 56.9 12.9 67 73-141 75-146 (211)
470 cd02042 ParA ParA and ParB of 97.1 0.0053 1.1E-07 51.3 9.7 78 15-117 2-80 (104)
471 COG1162 Predicted GTPases [Gen 97.0 0.0055 1.2E-07 60.6 10.6 83 98-199 79-163 (301)
472 PRK00098 GTPase RsgA; Reviewed 96.9 0.00078 1.7E-08 68.1 4.3 23 13-35 165-187 (298)
473 KOG0447|consensus 96.9 0.021 4.6E-07 59.7 14.0 135 6-143 302-494 (980)
474 cd03703 aeIF5B_II aeIF5B_II: T 96.9 0.011 2.5E-07 49.2 9.7 80 215-296 3-93 (110)
475 KOG0781|consensus 96.9 0.0091 2E-07 61.7 10.9 134 8-143 374-545 (587)
476 PF01656 CbiA: CobQ/CobB/MinD/ 96.8 0.0031 6.6E-08 59.3 7.2 68 74-143 94-163 (195)
477 PRK13695 putative NTPase; Prov 96.8 0.0051 1.1E-07 56.9 8.4 120 13-138 1-136 (174)
478 PRK01191 rpl24p 50S ribosomal 96.8 0.0026 5.6E-08 53.6 5.6 37 537-573 43-79 (120)
479 cd02035 ArsA ArsA ATPase funct 96.8 0.0086 1.9E-07 57.6 9.9 67 75-141 114-183 (217)
480 KOG2743|consensus 96.7 0.014 3E-07 56.9 10.4 23 13-35 58-80 (391)
481 KOG4181|consensus 96.7 0.028 6.1E-07 55.8 12.6 142 11-160 187-375 (491)
482 PF09173 eIF2_C: Initiation fa 96.7 0.027 5.9E-07 45.0 10.2 78 305-391 2-88 (88)
483 cd03702 IF2_mtIF2_II This fami 96.7 0.014 3E-07 47.7 8.8 75 215-296 3-78 (95)
484 TIGR01080 rplX_A_E ribosomal p 96.7 0.0036 7.8E-08 52.5 5.4 36 538-573 40-75 (114)
485 TIGR03348 VI_IcmF type VI secr 96.6 0.0076 1.6E-07 72.2 9.9 112 15-142 114-257 (1169)
486 PRK00004 rplX 50S ribosomal pr 96.6 0.0038 8.2E-08 52.0 5.0 35 539-573 4-38 (105)
487 TIGR02475 CobW cobalamin biosy 96.5 0.031 6.8E-07 57.5 12.5 22 14-35 6-27 (341)
488 TIGR01007 eps_fam capsular exo 96.5 0.042 9E-07 52.2 12.3 68 74-142 127-194 (204)
489 KOG1424|consensus 96.5 0.0026 5.6E-08 66.3 4.0 26 10-35 312-337 (562)
490 TIGR01079 rplX_bact ribosomal 96.4 0.0055 1.2E-07 50.8 4.8 35 539-573 3-37 (104)
491 TIGR01969 minD_arch cell divis 96.4 0.049 1.1E-06 53.5 12.5 66 74-141 108-173 (251)
492 KOG3859|consensus 96.3 0.033 7.1E-07 53.6 10.3 136 10-160 40-207 (406)
493 KOG2484|consensus 96.2 0.0041 8.9E-08 62.9 3.9 61 6-84 243-306 (435)
494 KOG0099|consensus 96.2 0.027 5.8E-07 53.8 8.8 85 59-143 186-284 (379)
495 PRK10751 molybdopterin-guanine 96.2 0.024 5.2E-07 51.9 8.4 27 11-37 5-31 (173)
496 COG1341 Predicted GTPase or GT 96.2 0.014 3E-07 59.7 7.3 31 10-40 71-101 (398)
497 cd04178 Nucleostemin_like Nucl 96.2 0.012 2.6E-07 54.2 6.3 45 100-145 1-47 (172)
498 PRK13849 putative crown gall t 96.1 0.059 1.3E-06 52.2 11.3 64 73-139 82-151 (231)
499 COG1618 Predicted nucleotide k 96.1 0.16 3.4E-06 45.4 12.5 32 9-40 2-33 (179)
500 TIGR00491 aIF-2 translation in 96.0 0.032 7E-07 61.5 9.9 77 219-298 473-550 (590)
No 1
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-77 Score=556.91 Aligned_cols=389 Identities=79% Similarity=1.209 Sum_probs=375.4
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (593)
|+..+|.+.|+++||+.+||+|||||||..+|+..+.+.+...+..|...|..++|++||+||+.++..+++.+++|..+
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahV 80 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHV 80 (394)
T ss_pred CchhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEec
Confidence 78899999999999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|+|||.+|++||+.|+.++|++||||+|.+|..+||+||+.++++.|+|.++|++||+|+++.++..+.+..+++++|..
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEe
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~ 240 (593)
++|++.+.|++..||+...+++..|. ..+.+|++++++++|.|.++.++||+|+|.++|++.|+|+|++|+|++|+|+
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~--~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lk 238 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWE--AKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILK 238 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchH--HHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeec
Confidence 99999999999999999888888885 4689999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCC
Q psy8869 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (593)
Q Consensus 241 ~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~ 320 (593)
+||.+.+.+.....+..|.+|+++++..+++.||++|++.|.++++.++.||++|+.|++..|.++|+|++.+|+...++
T Consensus 239 vg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keegg 318 (394)
T COG0050 239 VGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGG 318 (394)
T ss_pred cCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCC
Confidence 99999998666667889999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeee
Q psy8869 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNL 391 (593)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v 391 (593)
+++|+..||+|.+|+++.+.++.+++.++.+.+.+||++.+.++|.+|+++++|.||.+|+||+|+|.|.|
T Consensus 319 rhtpff~~yrpqfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvgaGvV 389 (394)
T COG0050 319 RHTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGAGVV 389 (394)
T ss_pred CCCCcccCccceeEEEeeeeeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEEeCCeeeeeeEE
Confidence 99999999999999999999999998899999999999999999999999999999999999999999965
No 2
>KOG0460|consensus
Probab=100.00 E-value=2.5e-76 Score=560.61 Aligned_cols=390 Identities=65% Similarity=1.067 Sum_probs=373.6
Q ss_pred ccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 4 ~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
..|.++||+.||+.+||+|||||||..+++..+.+.+...+..|...|+.++|+.||+||+.++..+++..++|.-+|+|
T Consensus 46 ~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCP 125 (449)
T KOG0460|consen 46 AVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCP 125 (449)
T ss_pred cccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
||.+|++||+.|+++.|++||||+|++|..+||+|||.++++.|+++++|++||.|+++.++..+.++.+++++|..++|
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999997778899999999999999999
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd 243 (593)
++.++|+|..||+...++.++-.+.+.+..|++++++++|.|.++.++||.|+|.++|.++|+|+|++|++++|+|++||
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~ 285 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGD 285 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCC
Confidence 99999999999998877766655556789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCc
Q psy8869 244 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHT 323 (593)
Q Consensus 244 ~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~ 323 (593)
++.+.+.++..+..|.+|+++++.+++|.|||++++.|.|++..+++|||+++.|++.++.++|+|++++|+...+|+++
T Consensus 286 e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGGR~~ 365 (449)
T KOG0460|consen 286 EVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGGRHK 365 (449)
T ss_pred EEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCCCcc
Confidence 99998777788999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred cccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 324 PFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 324 ~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
|+..+|+|.+|+.|.++++++.+....+.+.+||.+.+++.|.+|.++++|+||.||+||+|||.|.|-+
T Consensus 366 pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtGvvt~ 435 (449)
T KOG0460|consen 366 PFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTGVVTD 435 (449)
T ss_pred chhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEccCCeeeeeeeEee
Confidence 9999999999999999999999887788999999999999999999999999999999999999996533
No 3
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-74 Score=567.42 Aligned_cols=375 Identities=35% Similarity=0.533 Sum_probs=342.4
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHh---------------hhhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVL---------------SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
..|+++|++++||+|||||||+|+|+..+ ...+++++...|+||++++||+||+|++.++..|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 46899999999999999999999998543 234566677789999999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-------CChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-H
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~ 144 (593)
+.+.++|+|+|||.+|.++|+.|+++||++||||||+.+ ..+||+||+.+++.+|+.++||+|||||+++| +
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999998 77999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccC-----CCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEE
Q psy8869 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVED 219 (593)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~-----~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~ 219 (593)
++|+++++++..+++.+++...+++|+|+||.+|.|. .++||+++ .|+++|+ .+..|.++.++||+++|++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~Gp---TLleaLd-~~~~p~~~~d~Plr~pI~~ 238 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGP---TLLEALD-QLEPPERPLDKPLRLPIQD 238 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCC---hHHHHHh-ccCCCCCCCCCCeEeEeee
Confidence 7999999999999999999877899999999999873 35899876 5677777 4778889999999999999
Q ss_pred EEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 220 VFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 220 ~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
+|.+.+.|++..|+|++|.|++||+|++.|.+ ....|+||++++++.+.|.|||+|+++++++...+|++|+++++++
T Consensus 239 v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~--~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 239 VYSISGIGTVPVGRVESGVIKPGQKVTFMPAG--VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred EEEecCCceEEEEEEeeeeeccCCEEEEecCc--ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 99999999999999999999999999999854 7789999999999999999999999999999999999999999997
Q ss_pred CCC-cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEE-------------ecCCcccccCCCEEEEEEEe
Q psy8869 300 SIK-PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVLITVRL 365 (593)
Q Consensus 300 ~~~-~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~l~~gd~~~v~~~~ 365 (593)
.++ .+..|.|++.+|.++ +.|.+||+|++|+++...+|++. ..+++.+++.|+.+.|.+++
T Consensus 317 n~~t~s~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~ 391 (428)
T COG5256 317 NPPTVSPEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEP 391 (428)
T ss_pred CCcccccceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEe
Confidence 654 446999999999987 68999999999999999998872 23467899999999999999
Q ss_pred CceeeeecC------CeEEEeeCCeEEEeeeecc
Q psy8869 366 INPIAMEEG------LRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 366 ~~p~~~~~~------~r~vlr~~~~~i~~G~v~~ 393 (593)
.+|+|++.. +||+|||.|+|||+|+|+.
T Consensus 392 ~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~ 425 (428)
T COG5256 392 EKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLE 425 (428)
T ss_pred cCceEeeecccCCccceEEEEeCCCeEEeEEEEe
Confidence 999999963 6999999999999999864
No 4
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-70 Score=574.41 Aligned_cols=391 Identities=74% Similarity=1.187 Sum_probs=359.7
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (593)
|+...|.++|+++||+++||+|||||||+++|++...+.+++....++.+|.+++|+++|+|++.....|+.+++.++|+
T Consensus 1 ~~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~i 80 (394)
T PRK12736 1 MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CchhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEE
Confidence 77888999999999999999999999999999987666655555555679999999999999999999998889999999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|||||++|..+++.++..+|++++|+|+.+|...||++|+.++..+++|++||++||+|+++.++.++.+..+++++++.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999997667777788899999999
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEe
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~ 240 (593)
.++....+|++++||++|.++.+.||. ++.+|++.|.+.+|.|.++.++||+|+|+++|++++.|+|++|+|.+|+|+
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~~~~~~~~--~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKALEGDPKWED--AIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred hCCCcCCccEEEeeccccccCCCcchh--hHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 888666789999999999877889984 688999999999998888889999999999999999999999999999999
Q ss_pred cCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCC
Q psy8869 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (593)
Q Consensus 241 ~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~ 320 (593)
+||.|++.|.+.+..++|+||+.++.++++|.|||+|+++|++++..++++|++||+++++++++.|+|++.+|+++.++
T Consensus 239 ~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~ 318 (394)
T PRK12736 239 VGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGG 318 (394)
T ss_pred cCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCC
Confidence 99999999864457799999999999999999999999999999889999999999988777889999999999986444
Q ss_pred CCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
..++|..||++++|+|+.++.|++...++++++++||.+.|+|+|++|+|+++++||+||++|+|+|+|.|++
T Consensus 319 ~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~ 391 (394)
T PRK12736 319 RHTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGTVTE 391 (394)
T ss_pred CCCcccCCceEEEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEE
Confidence 4578999999999999999999998878888999999999999999999999999999999999999998864
No 5
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.5e-70 Score=571.57 Aligned_cols=391 Identities=76% Similarity=1.192 Sum_probs=359.6
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (593)
|+++.+..+|++++|+++||+|||||||+++|++.....++.....++.+|.+++|+++|+|++.....++.+++.++||
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 88888999999999999999999999999999987766666666656779999999999999999999998888999999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|||||++|..+++.++..+|++++|+|+.+|...||++|+.++..+++|++||++||||+.++++.++.++.+++++++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887899999998767777777889999999
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEe
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~ 240 (593)
+++...++|++++||++|.++.+.||. ++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|+|+
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~g~~~~~~--~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~ 238 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKALEGDAEWEA--KILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVK 238 (394)
T ss_pred cCCCccCccEEECccccccccCCchhH--hHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEe
Confidence 887655689999999999888889985 578899999988888888889999999999999999999999999999999
Q ss_pred cCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCC
Q psy8869 241 VGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (593)
Q Consensus 241 ~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~ 320 (593)
+||.|.+.|.+++..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++++++++.|+|++.+|+++.++
T Consensus 239 ~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~ 318 (394)
T TIGR00485 239 VGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGG 318 (394)
T ss_pred CCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCC
Confidence 99999998854456799999999999999999999999999999888999999999987777889999999999986555
Q ss_pred CCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
++++|..||++++|+++.++.|++...+++++|++|+.+.|+|+|++|+|+++++||+||++|+|+|+|.|+.
T Consensus 319 ~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~g~tv~~G~V~~ 391 (394)
T TIGR00485 319 RHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAGVVSK 391 (394)
T ss_pred CCCccccCceEEEEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEecCCcEEEEEEEEE
Confidence 5678999999999999999999998878888999999999999999999999999999999999999998754
No 6
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.2e-70 Score=568.93 Aligned_cols=391 Identities=80% Similarity=1.225 Sum_probs=357.8
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (593)
|+.+.|.+++++++|+++||+|||||||+++|++.....++.....++.+|.+++|+++|+|++.....++.++..++|+
T Consensus 1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 78889999999999999999999999999999987666665555555679999999999999999999998889999999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|||||++|.+++..++..+|++++|+|+.+|...|+++|+.++..+++|++||++||||+.+.++.++.+..+++++++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877899999987666777788889999999
Q ss_pred cCCCCCCceEEEeccCccccCC--CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeee
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGD--TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~--~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~ 238 (593)
+++.+.++|++++||++|.|.. +.||. ++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~--~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~ 238 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDDDEEWEA--KILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred cCCCcCceeEEecchhccccCCCCCcccc--cHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecE
Confidence 8886567999999999997754 46764 6899999999988888888899999999999999999999999999999
Q ss_pred EecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCC
Q psy8869 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDE 318 (593)
Q Consensus 239 l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~ 318 (593)
+++||+|.+.|.+.+.+++|++|++++.++++|.|||+|+++|++++..++++|++|++++++++++.|+|++.+|+++.
T Consensus 239 i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~ 318 (396)
T PRK12735 239 VKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEE 318 (396)
T ss_pred EeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEeccc
Confidence 99999999998655678999999999999999999999999999999999999999999887778899999999999864
Q ss_pred CCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 319 GGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 319 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
++..++|..||++++|+|+.++.|++...++++++++||.+.|+|+|++|+|+++++||+||++|+|+|+|.|+.
T Consensus 319 ~~~~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~ 393 (396)
T PRK12735 319 GGRHTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAK 393 (396)
T ss_pred CCCCCcccCCCeeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEcCCcEEEEEEEEE
Confidence 444578999999999999999999998777888999999999999999999999999999999999999998754
No 7
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3e-69 Score=563.15 Aligned_cols=391 Identities=80% Similarity=1.214 Sum_probs=357.8
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (593)
|+.+.|.+.|+++||+++||+|||||||+++|++...+.++.....++.+|.+++|+++|+|++.....++.+++.++|+
T Consensus 1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i 80 (396)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (396)
T ss_pred CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence 78889999999999999999999999999999987766666555555679999999999999999999998889999999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|||||.+|..++..++..+|++++|+|+.+|...||++|+.++..+++|++||++||+|+++.++.++.+..+++++++.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998877899999987666777788899999999
Q ss_pred cCCCCCCceEEEeccCccccC--CCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeee
Q psy8869 161 YEFPGNDIPIIKGSAKLALEG--DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~--~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~ 238 (593)
++++..++|++++||++|.+. .++||. ++.+|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|.+|+
T Consensus 161 ~~~~~~~~~iv~iSa~~g~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~ 238 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKALEGDDDEEWEK--KILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred cCCCccCCcEEEeecccccCCCCcccccc--cHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeE
Confidence 888666799999999998753 458985 6789999999988888888899999999999999999999999999999
Q ss_pred EecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCC
Q psy8869 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDE 318 (593)
Q Consensus 239 l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~ 318 (593)
+++||++.+.|.+.+..++|+||++++.++++|.|||+|+++|++++..++++|++|++++++++++.|+|++.+|+++.
T Consensus 239 i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~ 318 (396)
T PRK00049 239 IKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEE 318 (396)
T ss_pred EecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCc
Confidence 99999999998654678999999999999999999999999999998899999999999877777899999999999864
Q ss_pred CCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 319 GGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 319 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
++..++|..||++++|+++.++.|++.+.+++.++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|.|+.
T Consensus 319 ~g~~~~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~g~t~~~G~V~~ 393 (396)
T PRK00049 319 GGRHTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTK 393 (396)
T ss_pred CCCCCcccCCCEEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEE
Confidence 444578999999999999999999998777889999999999999999999999999999999999999998754
No 8
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.7e-69 Score=568.80 Aligned_cols=390 Identities=69% Similarity=1.113 Sum_probs=351.5
Q ss_pred cccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEec
Q psy8869 3 KSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDC 82 (593)
Q Consensus 3 ~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDt 82 (593)
.+.+.++|+++||+++||+|||||||+++|++.....+......+..+|..++|+++|+|++.....|++++++++|+||
T Consensus 52 ~~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 52 MATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred HhhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 35678899999999999999999999999987655544443444446999999999999999999999999999999999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|||.+|.++|+.++..+|+++||||+.+|...||++|+.++..+++|++||++||||++++++.++.++.++.++++.++
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999888889999999866677777778889998888
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVG 242 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~g 242 (593)
++...+|++|+||+++.++.+.+....++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|.+|.+++|
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~G 291 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVG 291 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecC
Confidence 86667999999998766555533333568899999999888888888999999999999999999999999999999999
Q ss_pred CEEEEeecCC--ceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCC
Q psy8869 243 EELEIIGIKD--TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (593)
Q Consensus 243 d~v~i~p~~~--~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~ 320 (593)
|.|.+.|.+. +..++|+||+.++.++++|.|||+|+++|++++..++++|++|++++++.++++|+|++.+|+++.++
T Consensus 292 d~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~gg 371 (447)
T PLN03127 292 EEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDEGG 371 (447)
T ss_pred CEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEcccccc
Confidence 9999987533 46899999999999999999999999999999999999999999987778899999999999987555
Q ss_pred CCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeec
Q psy8869 321 RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~ 392 (593)
+.++|..||++++|+++.+++|++.+.+++.++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|.|.
T Consensus 372 ~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~~g~Tvg~G~V~ 443 (447)
T PLN03127 372 RHTPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRTVGAGVVS 443 (447)
T ss_pred cCcccccCceeEEEeeecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEEEeCCcEEEEEEEE
Confidence 567899999999999999999999888888999999999999999999999999999999999999999874
No 9
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.5e-68 Score=561.99 Aligned_cols=386 Identities=67% Similarity=1.085 Sum_probs=348.8
Q ss_pred ccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 6 ~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
+..+|+++||+++||+|||||||+++|+.......+.....+..+|..++|+++|+|++.....|+++++.++|||||||
T Consensus 75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 34579999999999999999999999997665544333333456899999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
++|.++|+.++..+|+++|||||.+|...||++|+.++..+++|++||++||||++++++.++.++.++.++++.++++.
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999988889999999877778888889999999998876
Q ss_pred CCceEEEeccCcccc----------CCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEE
Q psy8869 166 NDIPIIKGSAKLALE----------GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVE 235 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~----------~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~ 235 (593)
.++|++|+||++|.+ +..+||. ++.+|++.|.+..+.|.++.+.||+|+|+++|+++|+|+|++|+|.
T Consensus 235 ~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~--~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~ 312 (478)
T PLN03126 235 DDIPIISGSALLALEALMENPNIKRGDNKWVD--KIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 312 (478)
T ss_pred CcceEEEEEccccccccccccccccCCCchhh--hHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEE
Confidence 689999999999854 2347885 5788999999877778888899999999999999999999999999
Q ss_pred eeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEee
Q psy8869 236 RGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALS 315 (593)
Q Consensus 236 ~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~ 315 (593)
+|.|++||.|.++|.+++..++|++|+.++.+++.|.|||+|+++|++++..++++|++|++++.+++++.|+|++.||+
T Consensus 313 sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~vL~ 392 (478)
T PLN03126 313 RGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVYVLK 392 (478)
T ss_pred cCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEEEec
Confidence 99999999999998766678999999999999999999999999999999999999999999977778899999999999
Q ss_pred cCCCCCCccccCCceeEEEEEeeeEEEEEEecC-----CcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeee
Q psy8869 316 KDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDN 390 (593)
Q Consensus 316 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~ 390 (593)
++.++++++|..||++++|+|+.++.|++..+. +++.+++||.+.|+|+|.+|+|+++++||+||++|+|+|+|.
T Consensus 393 ~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~~~Tva~G~ 472 (478)
T PLN03126 393 KEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGV 472 (478)
T ss_pred ccccCCcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEecCCceEEEEE
Confidence 864445578999999999999999999997543 456799999999999999999999999999999999999998
Q ss_pred ecc
Q psy8869 391 LLT 393 (593)
Q Consensus 391 v~~ 393 (593)
|+.
T Consensus 473 V~~ 475 (478)
T PLN03126 473 IQS 475 (478)
T ss_pred EEE
Confidence 754
No 10
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=8.5e-68 Score=555.17 Aligned_cols=391 Identities=69% Similarity=1.112 Sum_probs=353.2
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHV 80 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ii 80 (593)
|++..|..+|++++|+++||+|||||||+++|++......+.....+..+|.+++|+++|+|++.....|+.++++++|+
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 88899999999999999999999999999999987554433333344578999999999999999999999999999999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|||||.+|.+++.+++..+|++++||||..|...||++|+.++..+++|++||++||+|++++++.++.++.++.++++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999998777788888899999999
Q ss_pred cCCCCCCceEEEeccCccccC----------CCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEE
Q psy8869 161 YEFPGNDIPIIKGSAKLALEG----------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVV 230 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~----------~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~ 230 (593)
++++...+|++|+||++|+|. ..+||. ++.+|+++|.+.+|.|.++.+.||+|+|+++|++++.|+|+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~--~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv 238 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVD--KIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVA 238 (409)
T ss_pred hCCCCCcceEEEcchhhcccccccCccccccCCchhh--hHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEE
Confidence 988766799999999999752 136874 57899999999888888888999999999999999999999
Q ss_pred EEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEE
Q psy8869 231 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGE 310 (593)
Q Consensus 231 ~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~ 310 (593)
+|+|.+|++++||.|.+.|.+++..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++.++++++|+|+
T Consensus 239 ~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~ 318 (409)
T CHL00071 239 TGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQ 318 (409)
T ss_pred EEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEE
Confidence 99999999999999998875555779999999999999999999999999999988999999999999877789999999
Q ss_pred EEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecC-----CcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeE
Q psy8869 311 IYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQ 385 (593)
Q Consensus 311 i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~ 385 (593)
+.+|+++.+++.++|.+||++++|+|+.++.|++.... +++.+++||.+.|+|++.+|+|+++++||+||++|+|
T Consensus 319 i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~~~t 398 (409)
T CHL00071 319 VYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRT 398 (409)
T ss_pred EEEEecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecCCeE
Confidence 99999854333578999999999999999999998553 3678999999999999999999999999999999999
Q ss_pred EEeeeecc
Q psy8869 386 FIQDNLLT 393 (593)
Q Consensus 386 i~~G~v~~ 393 (593)
+|+|.|+.
T Consensus 399 ig~G~V~~ 406 (409)
T CHL00071 399 VGAGVVSK 406 (409)
T ss_pred EEEEEEEE
Confidence 99998764
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.9e-67 Score=552.64 Aligned_cols=375 Identities=30% Similarity=0.425 Sum_probs=332.0
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
.+||++||+++||+|||||||+++|+.... +.+...+.+.+++|..++|+++|+|++.+...|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 479999999999999999999999986432 11222333456899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecCCCC--H
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD--D 143 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~--~ 143 (593)
+++.++|+|||||++|.++|+.+++.+|++||||||++|.+ .||++|+.++..+++|++||++||||+.+ +
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999853 79999999999999999998999999873 3
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEE
Q psy8869 144 -EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPV 217 (593)
Q Consensus 144 -~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i 217 (593)
++.++++.++++++++..++...++|++|+||++|.|.. ++||.+ ..|+++|.+ +++|.++.+.||+|+|
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g---~tLl~~l~~-i~~p~~~~~~plr~~I 238 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG---PTLLEALDQ-INEPKRPSDKPLRLPL 238 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccch---HHHHHHHhh-cCCCccccCCCcEEEE
Confidence 467888889999999999987667999999999998743 489975 467777776 5667788899999999
Q ss_pred EEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEec
Q psy8869 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 297 (593)
Q Consensus 218 ~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 297 (593)
+++|++++.|+|+.|+|++|.+++||+|.++|++ ..++|+||+.++.++++|.|||+|+++|++++..++++|+||++
T Consensus 239 ~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 239 QDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--LTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--CEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 9999999999999999999999999999999864 57899999999999999999999999999998899999999998
Q ss_pred CC-C-CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEe-------------cCCcccccCCCEEEEE
Q psy8869 298 PG-S-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLIT 362 (593)
Q Consensus 298 ~~-~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~gd~~~v~ 362 (593)
+. . +.++++|+|++.||+++ .+|..||++++|+++.++.|++.- .+++.+|++||.+.|+
T Consensus 317 ~~~~p~~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~ 391 (447)
T PLN00043 317 SKDDPAKEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVK 391 (447)
T ss_pred CCCCCCccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEE
Confidence 73 3 46689999999999875 689999999999999999998741 1246789999999999
Q ss_pred EEeCceeeeecC------CeEEEeeCCeEEEeeeecc
Q psy8869 363 VRLINPIAMEEG------LRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 363 ~~~~~p~~~~~~------~r~vlr~~~~~i~~G~v~~ 393 (593)
|++.+|+|++++ +||+|||+|+|+|+|.|..
T Consensus 392 i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~ 428 (447)
T PLN00043 392 MIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 428 (447)
T ss_pred EEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEE
Confidence 999999999974 8999999999999998743
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.2e-66 Score=546.56 Aligned_cols=377 Identities=32% Similarity=0.463 Sum_probs=334.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
.+|+++||+++||+|||||||+++|+.... ..+.+++.+.+.+|..++|+++|+|++.+...+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 468999999999999999999999986432 12344555557899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecC--CCCH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKAD--MVDD 143 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~D--l~~~ 143 (593)
+++.++|+|||||.+|.++|+.+++.+|+++|||||.+|.+ .||++|+.++..+|+|++||+||||| ++++
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999974 79999999999999999988999999 4444
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEE
Q psy8869 144 -EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPV 217 (593)
Q Consensus 144 -~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i 217 (593)
++.++.+..++.++++.+++...++|+||+||++|.|.. ++||.+ .+|+++|.. +++|.++.++||+|+|
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G---~tL~~~l~~-~~~~~~~~~~p~r~~I 238 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKG---PTLLEALDT-LEPPKRPVDKPLRLPL 238 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccch---HHHHHHHhC-CCCCCcCCCCCeEEEE
Confidence 478889999999999999887667999999999997742 489975 467777766 4567777889999999
Q ss_pred EEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEec
Q psy8869 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 297 (593)
Q Consensus 218 ~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 297 (593)
+++|+++|.|++++|+|.+|+|++||.|.++|.+ ..++|++|+.++.+++.|.|||+|+++|++++..++++|++|++
T Consensus 239 ~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 239 QDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred EEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 9999999999999999999999999999999854 67999999999999999999999999999998899999999998
Q ss_pred CC-C-CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccccCCCEEEEE
Q psy8869 298 PG-S-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLIT 362 (593)
Q Consensus 298 ~~-~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~gd~~~v~ 362 (593)
++ . +.++++|+|+|.||+++ ++|.+||++++|+++.++.|++..+ .++++|++||.+.|+
T Consensus 317 ~~~~p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~ 391 (446)
T PTZ00141 317 SKNDPAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVK 391 (446)
T ss_pred CCCCCCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEE
Confidence 74 3 45689999999999975 5899999999999999999998633 245689999999999
Q ss_pred EEeCceeeeecC------CeEEEeeCCeEEEeeeecchh
Q psy8869 363 VRLINPIAMEEG------LRFAIREGVQQFIQDNLLTKE 395 (593)
Q Consensus 363 ~~~~~p~~~~~~------~r~vlr~~~~~i~~G~v~~~~ 395 (593)
|++++|+|++++ +||+||++|+|+|+|.|+...
T Consensus 392 l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~ 430 (446)
T PTZ00141 392 MVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVE 430 (446)
T ss_pred EEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEe
Confidence 999999999964 799999999999999875544
No 13
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.2e-63 Score=528.88 Aligned_cols=377 Identities=37% Similarity=0.578 Sum_probs=333.4
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhh---------------hcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
.+|+++||+++||+|||||||+++|+..... .+..++...+.+|.+++|+++|+|++.....+++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 3689999999999999999999999855322 2333445567899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCC--CCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD--GPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLEL 149 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~--g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~ 149 (593)
+++.++|||||||++|.+++..++..+|++|+|+|+++ +...|+++|+.++..+++++++|++||+|+.++ ++.++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence 99999999999999999999999999999999999999 899999999999999999878888999999864 345667
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeC
Q psy8869 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224 (593)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~ 224 (593)
+..++.++++.+++....++++++||++|.+.. .+||.+ ..|+++|.. +++|.++.++||+|+|+++|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g---~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~ 237 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNG---PTLLEALDN-LKPPEKPTDKPLRIPIQDVYSIS 237 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccH---HHHHHHHhc-CCCCccccCCCcEEEEEEEEeeC
Confidence 778889999888876556899999999987643 489975 567777765 67777788999999999999999
Q ss_pred CCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCC-CCc
Q psy8869 225 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKP 303 (593)
Q Consensus 225 ~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~ 303 (593)
+.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.++.+++.|.|||+|+++|++++..++++|++|++++. +..
T Consensus 238 g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~ 315 (425)
T PRK12317 238 GVGTVPVGRVETGVLKVGDKVVFMPAG--VVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTV 315 (425)
T ss_pred CCeEEEEEEEeeccEecCCEEEECCCC--CeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCc
Confidence 999999999999999999999999865 57899999999999999999999999999998899999999998865 556
Q ss_pred ccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccccCCCEEEEEEEeCceee
Q psy8869 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPIA 370 (593)
Q Consensus 304 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~gd~~~v~~~~~~p~~ 370 (593)
+++|+|++.||+++ ++|.+||++++|+++.++.|++..+ .++.+|++||.+.|+|+|.+|+|
T Consensus 316 ~~~f~a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~ 390 (425)
T PRK12317 316 AEEFTAQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLV 390 (425)
T ss_pred ccEEEEEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeE
Confidence 79999999999875 5899999999999999999998632 24678999999999999999999
Q ss_pred eecC------CeEEEeeCCeEEEeeeecchh
Q psy8869 371 MEEG------LRFAIREGVQQFIQDNLLTKE 395 (593)
Q Consensus 371 ~~~~------~r~vlr~~~~~i~~G~v~~~~ 395 (593)
++++ +||+||++|+|+|+|.|+...
T Consensus 391 ~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~ 421 (425)
T PRK12317 391 IEKVKEIPQLGRFAIRDMGQTIAAGMVIDVK 421 (425)
T ss_pred EEeCCcCCCCccEEEEECCCeEEEEEEEEec
Confidence 9997 899999999999999876543
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3e-63 Score=525.50 Aligned_cols=377 Identities=35% Similarity=0.550 Sum_probs=332.9
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
.+|+++||+++||+|||||||+++|+.... ..+.+++.+.+.+|.+++|+++|+|++.....+++
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 478999999999999999999999986422 12334444557899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC---CChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG---PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLE 148 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g---~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~ 148 (593)
++..+.|||||||++|.+++..++..+|+++||+|++++ ...|+.+|+.++..++++++||++||+|+.++ ++.++
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 999999999999999999999999999999999999998 77899999999999998888888999999863 45667
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEe
Q psy8869 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (593)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (593)
.+..++.++++.+++....++++++||++|.+.. .+||.+ .+|+++|.+ +++|.++.++||+|+|+++|++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g---~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~ 238 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKG---KTLLEALDA-LEPPEKPTDKPLRIPIQDVYSI 238 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccc---hHHHHHHhc-CCCCCCccCCCcEEEEEEEEec
Confidence 7788999999988876557899999999997643 489974 478888876 5667777889999999999999
Q ss_pred CCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCC-CC
Q psy8869 224 SGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IK 302 (593)
Q Consensus 224 ~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~ 302 (593)
+|.|+|++|+|.+|+|++||.|.+.|.+ ..++|+||+.++.++++|.|||+|+++|++++..++++|++|++++. ++
T Consensus 239 ~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~ 316 (426)
T TIGR00483 239 TGVGTVPVGRVETGVLKPGDKVVFEPAG--VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPK 316 (426)
T ss_pred CCCeEEEEEEEccceeecCCEEEECCCC--cEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCc
Confidence 9999999999999999999999999864 67899999999999999999999999999999899999999998864 56
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccccCCCEEEEEEEeCcee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPI 369 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~gd~~~v~~~~~~p~ 369 (593)
++++|+|++.||+++ ++|..||++++|+|+.++.|++..+ .++.+|++||.+.|+|++++|+
T Consensus 317 ~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 391 (426)
T TIGR00483 317 VAKEFTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPM 391 (426)
T ss_pred eeeEEEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCee
Confidence 678999999999975 5899999999999999999998632 3567899999999999999999
Q ss_pred eeec------CCeEEEeeCCeEEEeeeecchh
Q psy8869 370 AMEE------GLRFAIREGVQQFIQDNLLTKE 395 (593)
Q Consensus 370 ~~~~------~~r~vlr~~~~~i~~G~v~~~~ 395 (593)
|++. ++||+||++|+|+|+|.|+...
T Consensus 392 ~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~ 423 (426)
T TIGR00483 392 VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423 (426)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEee
Confidence 9997 5899999999999999876543
No 15
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-60 Score=456.17 Aligned_cols=370 Identities=25% Similarity=0.344 Sum_probs=320.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhh---------------c-CCccc-cccccCCChhhhhcCceEEeeeeEEe
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKK---------------F-GGEAK-SYDQIDAAPEEKARGITINTAHIEYE 71 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---------------~-~~~~~-~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (593)
.|..+++..+|++|.|||||+|+|++..... + .+... ....+|-+..|+++||||+.++..|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4677999999999999999999998542110 1 11112 22357999999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHH
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELV 150 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~ 150 (593)
++.+.|.+.|||||+.|.+||..|++.||.+|++|||..|+..||+.|..++..|||++++|+||||||+++ ++.|+.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 6799999
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCccccC-----CCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeC-
Q psy8869 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS- 224 (593)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~-----~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~- 224 (593)
..++..|.+.+++. ...+||+||+.|.|. .++||.++.+.++|+.+. .......+||||||+.+.+-.
T Consensus 163 ~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~----i~~~~~~~~~RfPVQ~V~Rp~~ 236 (431)
T COG2895 163 VADYLAFAAQLGLK--DVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVE----IADDRSAKAFRFPVQYVNRPNL 236 (431)
T ss_pred HHHHHHHHHHcCCC--cceEEechhccCCcccccccCCCcccCccHHHHHhhcc----ccccccccceeeceEEecCCCC
Confidence 99999999999986 568999999999873 469999987777776653 233445678999999998743
Q ss_pred -CCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCC-CC
Q psy8869 225 -GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IK 302 (593)
Q Consensus 225 -~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~ 302 (593)
.+| +.|+|.+|++++||.+.+.|++ ...+|+.|..++.+.++|.||+.|++.|. +..+++||++|+..+. +.
T Consensus 237 dfRG--yaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~ 310 (431)
T COG2895 237 DFRG--YAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPA 310 (431)
T ss_pred cccc--cceeeeccceecCCeEEEccCC--CeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcc
Confidence 456 8999999999999999999865 77899999999999999999999999998 7889999999999876 56
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-----------CCcccccCCCEEEEEEEeCceeee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAM 371 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~gd~~~v~~~~~~p~~~ 371 (593)
++..|.|.++|+... |+.+|..+.+.+++..+.+++.-+ ...+.|..|+.+.|++.+++|+++
T Consensus 311 ~~~~f~A~vvWm~~~------pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~f 384 (431)
T COG2895 311 VADAFDADVVWMDEE------PLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAF 384 (431)
T ss_pred hhhhcceeEEEecCC------CCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceee
Confidence 689999999999964 899999999999988888877522 245679999999999999999999
Q ss_pred ecC------CeEEEee--CCeEEEeeeecchhh
Q psy8869 372 EEG------LRFAIRE--GVQQFIQDNLLTKEI 396 (593)
Q Consensus 372 ~~~------~r~vlr~--~~~~i~~G~v~~~~~ 396 (593)
++| ++|||-| ++.|+|+|.|...+-
T Consensus 385 d~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~ 417 (431)
T COG2895 385 DAYAENRATGSFILIDRLTNGTVGAGMILASLS 417 (431)
T ss_pred cccccCcccccEEEEEcCCCCceeceeeechhh
Confidence 998 5799966 678999998766543
No 16
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.2e-59 Score=499.16 Aligned_cols=401 Identities=21% Similarity=0.274 Sum_probs=329.8
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhh---------------hcC--CccccccccCCChhhhhcCceEEeeeeE
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFG--GEAKSYDQIDAAPEEKARGITINTAHIE 69 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~ 69 (593)
.+.++.++|+++||+|||||||+++|+..... .+. +++...+++|..++|++||+|++.....
T Consensus 22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 45689999999999999999999999865321 111 1334456899999999999999999999
Q ss_pred EeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHH
Q psy8869 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLE 148 (593)
Q Consensus 70 ~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~ 148 (593)
++++++.++|||||||++|.++|..++..+|+++|||||.+|+..||++|+.++..++++++||++||||++++ ++.++
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999864 45677
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEe
Q psy8869 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (593)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (593)
.++.++..+++.+++. ...+++|+||++|.|.. ++||.+. .|+++|.. +++|.+..+.||+|+|+++++.
T Consensus 182 ~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G~---tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~ 256 (474)
T PRK05124 182 RIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSGP---TLLEVLET-VDIQRVVDAQPFRFPVQYVNRP 256 (474)
T ss_pred HHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccchh---hHHHHHhh-cCCCCCCCCCCceeeEEEEEec
Confidence 7777888888777642 36899999999998743 4899654 56666654 5666777889999999999875
Q ss_pred CCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCC-CC
Q psy8869 224 SGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IK 302 (593)
Q Consensus 224 ~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~ 302 (593)
......+.|+|.+|+|++||+|.++|.+ ..++|++|+.++.+++.|.|||+|+++|++ ..++++|++||+++. +.
T Consensus 257 ~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~ 332 (474)
T PRK05124 257 NLDFRGYAGTLASGVVKVGDRVKVLPSG--KESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEALQ 332 (474)
T ss_pred CCcccceEEEEEeEEEecCCEEEEecCC--ceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCCc
Confidence 4322237899999999999999999864 679999999999999999999999999984 578999999999875 46
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecC-----------CcccccCCCEEEEEEEeCceeee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAM 371 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~gd~~~v~~~~~~p~~~ 371 (593)
+++.|+|++.||+. .+|..||++.+|+|+.++.|++..+. ++.+|++||.+.|+|++.+|+|+
T Consensus 333 ~~~~f~a~i~~l~~------~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~ 406 (474)
T PRK05124 333 AVQHASADVVWMAE------QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVL 406 (474)
T ss_pred cceEEEEEEEEeCC------cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeecc
Confidence 78999999999973 47999999999999999999986432 35689999999999999999999
Q ss_pred ecC------CeEEE--eeCCeEEEeeeecchh---hhccccccccCchhhHHhhhcccceeEE
Q psy8869 372 EEG------LRFAI--REGVQQFIQDNLLTKE---IVNSNKINIDKGKEYIERSINNKKRWYV 423 (593)
Q Consensus 372 ~~~------~r~vl--r~~~~~i~~G~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Wyv 423 (593)
+++ +||+| |++++|||+|.|+... .+...... +=..++.....+.-+||++
T Consensus 407 e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 468 (474)
T PRK05124 407 DPYQQNRVTGGFIFIDRLTNVTVGAGMVREPLAQATAAPSEFS-AFELELNALVRRHFPHWGA 468 (474)
T ss_pred ccCCcCCcceeEEEEECCCCceEEEEEEeccccccccccccch-hhHHHHHHHHHHhCcccch
Confidence 987 56999 5789999999987654 22221111 0113344555666677875
No 17
>KOG0458|consensus
Probab=100.00 E-value=1.3e-60 Score=485.84 Aligned_cols=375 Identities=25% Similarity=0.393 Sum_probs=335.4
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHh---------------hhhcCCccccccccCCChhhhhcCceEEeeeeEEe
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVL---------------SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (593)
..++++++.+++||+|+|||||+|+|+..+ ...|++++.+.|.+|...+||+||+|.+.+...|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 346789999999999999999999998543 23456677777999999999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecCCCCH-
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVDD- 143 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~- 143 (593)
...+.++|+|+|||.+|+.+|+.|+.++|+++|||||+.|.+ +||+||+.+++.+|+.++||+|||||+++|
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 999999999999999999999999999999999999998765 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hhcCCCCCCceEEEeccCccccCC--------CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCee
Q psy8869 144 EELLELVEIEIRELL-NKYEFPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPTPNRAIDGAFL 214 (593)
Q Consensus 144 ~~~~~~~~~~~~~~l-~~~~~~~~~~~vi~~Sa~~g~~~~--------~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 214 (593)
++++++++..+..+| +..+|...++.|+|+|+++|.|.. ..||+++ .||+.|+. +..|.++.+.||+
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp---~LL~~id~-~~~p~~~~~kPl~ 407 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGP---TLLSQIDS-FKIPERPIDKPLR 407 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCC---hHHHHHhh-ccCCCCcccCCeE
Confidence 689999999999999 788998888899999999998743 2799876 56666666 5667788999999
Q ss_pred EEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceE
Q psy8869 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (593)
Q Consensus 215 ~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~v 294 (593)
+.|.+++..++.|..++|+|++|.|+.||+|+++|+. ..++|++|.+++.+..+|.|||.|++.|.++..+.++.|++
T Consensus 408 ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i 485 (603)
T KOG0458|consen 408 LTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDI 485 (603)
T ss_pred EEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEEEEeeecCCCcceeEeeCCEEEEecCccChhhccccee
Confidence 9999999999999999999999999999999999754 67899999999999999999999999999999999999999
Q ss_pred Ee-cCCCC-CcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEE-------------ecCCcccccCCCEE
Q psy8869 295 LA-KPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNV 359 (593)
Q Consensus 295 l~-~~~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~l~~gd~~ 359 (593)
++ .+..+ ..+..|.|++.||+.. .||..|.+..+|+|+....|++. ..+.+++|..|+.|
T Consensus 486 ~~~~~~~~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a 560 (603)
T KOG0458|consen 486 ADSGPQFPISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSA 560 (603)
T ss_pred eecCCCccccceeEEEEEEEEeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCcee
Confidence 99 55555 4458899999999974 78999999999999877665542 12355899999999
Q ss_pred EEEEEeCceeeeecC------CeEEEeeCCeEEEeeeec
Q psy8869 360 LITVRLINPIAMEEG------LRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 360 ~v~~~~~~p~~~~~~------~r~vlr~~~~~i~~G~v~ 392 (593)
.++++...|+|++.+ +||++|.+|.|||+|.|.
T Consensus 561 ~vele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~ 599 (603)
T KOG0458|consen 561 IVELETERPICLETFAENRALGRVVLRKSGSTIAAGKVT 599 (603)
T ss_pred eeeccccCchhhhhhhhchhheeEEEeccCceeeeeeEE
Confidence 999999999999976 799999999999999874
No 18
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.3e-58 Score=484.60 Aligned_cols=363 Identities=26% Similarity=0.334 Sum_probs=313.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhh---------------hcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCe
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSK---------------KFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKAR 75 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 75 (593)
++|+++||+|||||||+++|+..... .+. +++.+.|++|..++|++||+|++.....++++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999854321 121 2355567899999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHHHHHH
Q psy8869 76 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEI 154 (593)
Q Consensus 76 ~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~~~~~ 154 (593)
.++|+|||||++|.++|..++..+|++++||||.+|+..||++|+.++..++++++||++||||++++ ++.++.++.++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999864 45667777888
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEE
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTV 229 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v 229 (593)
.++++.+++. +++++|+||++|.|.. ++||.+. .|+++|.. ++.|.+..+.||+|+|+++++....+..
T Consensus 161 ~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g~---tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g 234 (406)
T TIGR02034 161 LAFAEQLGFR--DVTFIPLSALKGDNVVSRSESMPWYSGP---TLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRG 234 (406)
T ss_pred HHHHHHcCCC--CccEEEeecccCCCCcccccCCCccchh---HHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEE
Confidence 8888887763 6899999999997643 4899654 56666655 4566677889999999999875443334
Q ss_pred EEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCC-CCcccEEE
Q psy8869 230 VTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKPHKHFT 308 (593)
Q Consensus 230 ~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~ 308 (593)
++|+|.+|+|++||.|.+.|.+ ..++|++|+.++.++++|.|||+|+++|++ ..++++|++|++++. +++++.|+
T Consensus 235 ~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~ 310 (406)
T TIGR02034 235 YAGTIASGSVHVGDEVVVLPSG--RSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFA 310 (406)
T ss_pred EEEEEecceeecCCEEEEeCCC--cEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEE
Confidence 7899999999999999999854 679999999999999999999999999984 578999999999976 56789999
Q ss_pred EEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecC-----------CcccccCCCEEEEEEEeCceeeeecC---
Q psy8869 309 GEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEEG--- 374 (593)
Q Consensus 309 a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~gd~~~v~~~~~~p~~~~~~--- 374 (593)
|++.|+++ .+|..||++.+|+|+.++.|++.... ++..+.+|+.+.|+|++++|+|++.+
T Consensus 311 a~i~~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~ 384 (406)
T TIGR02034 311 ATLVWMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAEN 384 (406)
T ss_pred EEEEEeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCC
Confidence 99999984 37999999999999999999986432 24678999999999999999999987
Q ss_pred ---CeEEE--eeCCeEEEeeee
Q psy8869 375 ---LRFAI--REGVQQFIQDNL 391 (593)
Q Consensus 375 ---~r~vl--r~~~~~i~~G~v 391 (593)
+||+| |++|+|||+|.|
T Consensus 385 ~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 385 RTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred CcceeEEEEECCCCCeEEEEeC
Confidence 49999 778999999964
No 19
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=3.4e-59 Score=450.19 Aligned_cols=365 Identities=31% Similarity=0.500 Sum_probs=320.4
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe---------------
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------- 71 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------- 71 (593)
....++++|+++||+|||||||++.|+....+++.+..+. ++|.++||.++|.|.++++.-+.
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~--~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRS--YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhh--hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 4467899999999999999999999999888888777664 48999999999999988765442
Q ss_pred --------eCCeEEEEEecCChhhhHHHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 72 --------TKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 72 --------~~~~~~~iiDtpGh~~~~~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
..++.+.|+||.||+.|++++++|+- ..|+.+||+.|++|++..|+|||.++.++++|.| |++||+|+.
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPvi-VvvTK~D~~ 268 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVI-VVVTKIDMV 268 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEE-EEEEecccC
Confidence 23567889999999999999999985 7899999999999999999999999999999955 568999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCC--------------------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 142 DDEELLELVEIEIRELLNKYEFP--------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+. ++++.+.+++..+|+..+-. ..-+|+|.+|+.+| .+++-|. .+..+
T Consensus 269 ~d-dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg----------~GldlL~-e~f~~ 336 (527)
T COG5258 269 PD-DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG----------EGLDLLD-EFFLL 336 (527)
T ss_pred cH-HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC----------ccHHHHH-HHHHh
Confidence 85 66777778888888765521 12589999999998 5665444 44455
Q ss_pred CCCCCC-CCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCC--ceEEEEEEEEecceecceeeecceEE
Q psy8869 202 IPTPNR-AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD--TVKTTCTGVEMFRKLLDQGQAGDNIG 278 (593)
Q Consensus 202 l~~~~~-~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~--~~~~~v~si~~~~~~~~~a~aG~~v~ 278 (593)
+|...+ +...||.|+|+++|++.|+|+|+.|.|.+|.++.||+++++|.+. +.+++|+||++|+..+++|.||.+++
T Consensus 337 Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig 416 (527)
T COG5258 337 LPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIG 416 (527)
T ss_pred CCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEE
Confidence 775533 567899999999999999999999999999999999999998654 57899999999999999999999999
Q ss_pred EEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCE
Q psy8869 279 LLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDN 358 (593)
Q Consensus 279 l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~ 358 (593)
++++|+.++.+++||+|+....|++.+.|+|++.+|.|| |.|+.||.|++|+-++++.++++ +.+..+|++||.
T Consensus 417 ~Al~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~-~id~~~L~~GD~ 490 (527)
T COG5258 417 IALKGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFE-EIDKGFLMPGDR 490 (527)
T ss_pred EEecccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEE-EcccccccCCCc
Confidence 999999999999999999887789999999999999997 78999999999999999999987 556789999999
Q ss_pred EEEEEEeC-ceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 359 VLITVRLI-NPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 359 ~~v~~~~~-~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
..++++|. +|.+++.||+|+||+| ++-|+|.|+.
T Consensus 491 g~vr~~fkyrP~~v~eGQ~fvFReG-rskgvG~v~~ 525 (527)
T COG5258 491 GVVRMRFKYRPHHVEEGQKFVFREG-RSKGVGRVIR 525 (527)
T ss_pred ceEEEEEEeCchhhccCcEEEEecC-CCccceEEec
Confidence 99999997 9999999999999987 8888898764
No 20
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=5.8e-57 Score=472.04 Aligned_cols=351 Identities=28% Similarity=0.385 Sum_probs=299.6
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe---------------e
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE---------------T 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---------------~ 72 (593)
...++++|+++||+|||||||+++|++. .+|++++|.+||+|+++.+..+. .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 4578899999999999999999999953 36889999999999998776441 1
Q ss_pred C------------------CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHHHcCCCeEEE
Q psy8869 73 K------------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVV 133 (593)
Q Consensus 73 ~------------------~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~l~ip~iiV 133 (593)
+ .+.++|+|+|||++|.++|++++..+|+++|||||.++ ...||++|+.++..++++++||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 1 24789999999999999999999999999999999996 7999999999999999999888
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCe
Q psy8869 134 FLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAF 213 (593)
Q Consensus 134 vvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 213 (593)
++||||+++.+. .++...++.++++.... ...|++|+||++| .++++|+++|.+.+|.|.++.+.||
T Consensus 177 vlNKiDlv~~~~-~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G----------~nI~~Ll~~L~~~lp~~~r~~~~p~ 243 (460)
T PTZ00327 177 LQNKIDLVKEAQ-AQDQYEEIRNFVKGTIA--DNAPIIPISAQLK----------YNIDVVLEYICTQIPIPKRDLTSPP 243 (460)
T ss_pred EEecccccCHHH-HHHHHHHHHHHHHhhcc--CCCeEEEeeCCCC----------CCHHHHHHHHHhhCCCCCCCCCCCc
Confidence 999999997533 34445577777765432 4689999999998 6899999999988888888889999
Q ss_pred eEEEEEEEEeCC--------CcEEEEEEEEeeeEecCCEEEEeecCC-----c------eEEEEEEEEecceecceeeec
Q psy8869 214 LLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKD-----T------VKTTCTGVEMFRKLLDQGQAG 274 (593)
Q Consensus 214 ~~~i~~~~~~~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~~-----~------~~~~v~si~~~~~~~~~a~aG 274 (593)
+|+|+++|.+.+ +|+|++|+|.+|++++||+|.+.|.+. + ..++|+|||.++.++++|.||
T Consensus 244 r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG 323 (460)
T PTZ00327 244 RMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPG 323 (460)
T ss_pred EEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCC
Confidence 999999998864 799999999999999999999998531 1 358999999999999999999
Q ss_pred ceEEEEec---cCCccCCccceEEecCCCCC-cccEEEEEEEEeecCC-----CCC----CccccCCceeEEEEEeeeEE
Q psy8869 275 DNIGLLLR---GTKREDVERGQVLAKPGSIK-PHKHFTGEIYALSKDE-----GGR----HTPFFSNYRPQFYFRTTDVT 341 (593)
Q Consensus 275 ~~v~l~l~---~~~~~~i~~G~vl~~~~~~~-~~~~f~a~i~~l~~~~-----~~~----~~~i~~g~~~~~~~~~~~~~ 341 (593)
|+|+++|+ +++..++.||++|++++.++ .++.|+|++.||++.. +++ ..+|..||++.+|+|+.++.
T Consensus 324 ~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~ 403 (460)
T PTZ00327 324 GLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTG 403 (460)
T ss_pred CEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEE
Confidence 99999987 67778999999999987654 4579999999998731 111 26899999999999999999
Q ss_pred EEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEee---C-CeEEEeeeec
Q psy8869 342 GSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE---G-VQQFIQDNLL 392 (593)
Q Consensus 342 ~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~---~-~~~i~~G~v~ 392 (593)
|++....+. . .++|++.+|+|+.+|+||+||+ . .+|+|+|.|.
T Consensus 404 ~~i~~i~~~-------~-~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~ 450 (460)
T PTZ00327 404 GRVVGIKDD-------G-IAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIR 450 (460)
T ss_pred EEEEEeCCC-------e-EEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEc
Confidence 999855432 1 6789999999999999999985 3 4899999764
No 21
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.2e-55 Score=485.87 Aligned_cols=420 Identities=22% Similarity=0.260 Sum_probs=339.7
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhh---------------hcC--CccccccccCCChhhhhcCceEEeeeeEE
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFG--GEAKSYDQIDAAPEEKARGITINTAHIEY 70 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~ 70 (593)
..++.++|+++||+|||||||+++|+..... .+. ......+.+|..++|+++|+|++..+..+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4578899999999999999999999865321 111 23334467999999999999999999999
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHH
Q psy8869 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLEL 149 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~ 149 (593)
++++..++|+|||||++|.++|..++..+|+++||||+..|...||++|+.++..++++++||++||||++++ ++.++.
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888888999999863 355677
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeC
Q psy8869 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224 (593)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~ 224 (593)
+..++.++++.+++. +++++|+||++|.+.. .+||.+ .+|++.|.. ++.|.+..++||+|+|+++++..
T Consensus 180 i~~~i~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g---~tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~ 253 (632)
T PRK05506 180 IVADYRAFAAKLGLH--DVTFIPISALKGDNVVTRSARMPWYEG---PSLLEHLET-VEIASDRNLKDFRFPVQYVNRPN 253 (632)
T ss_pred HHHHHHHHHHHcCCC--CccEEEEecccCCCccccccCCCcccH---hHHHHHHhc-CCCCCCcCCCCceeeEEEEEecC
Confidence 777888888888873 6789999999997743 489965 466677765 45566668899999999998754
Q ss_pred CCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCC-CCc
Q psy8869 225 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS-IKP 303 (593)
Q Consensus 225 ~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~ 303 (593)
..+..++|+|.+|+|++||+|.+.|.+ ..++|+||++++.+++.|.|||+|+++|++ ..++++|++||+++. ++.
T Consensus 254 ~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~ 329 (632)
T PRK05506 254 LDFRGFAGTVASGVVRPGDEVVVLPSG--KTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEV 329 (632)
T ss_pred CCceEEEEEEecceeecCCEEEEcCCC--ceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcc
Confidence 222337899999999999999999864 679999999999999999999999999984 568999999999975 456
Q ss_pred ccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-----------CCcccccCCCEEEEEEEeCceeeee
Q psy8869 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAME 372 (593)
Q Consensus 304 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~gd~~~v~~~~~~p~~~~ 372 (593)
++.|+|++.||+++ ++.+||++++|+|+.++.|++..+ .++.+|++|+.+.|+|++.+|+|++
T Consensus 330 ~~~f~a~i~~l~~~------~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e 403 (632)
T PRK05506 330 ADQFDATVVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFD 403 (632)
T ss_pred eeEEEEEEEEeccc------ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeee
Confidence 89999999999864 577999999999999999998633 2457899999999999999999999
Q ss_pred cC------CeEEEee--CCeEEEeeeecchhhhccccccccCc---hhhHHhhhcccceeEEEeeccCcHHH-HHHHHHH
Q psy8869 373 EG------LRFAIRE--GVQQFIQDNLLTKEIVNSNKINIDKG---KEYIERSINNKKRWYVIHSYSGMEKN-VQRKLIE 440 (593)
Q Consensus 373 ~~------~r~vlr~--~~~~i~~G~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Wyvl~t~~~~E~~-~~~~L~~ 440 (593)
++ +||+||| +|.|||+|.|++.+. .+...+-..+ ....+........-+++.=.+|.-+. +++.|.+
T Consensus 404 ~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~ 482 (632)
T PRK05506 404 PYARNRTTGSFILIDRLTNATVGAGMIDFALR-RATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVER 482 (632)
T ss_pred eccccccCceEEEEeccCCceEEEEEECcccc-ccccccccccccCHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHH
Confidence 87 5799954 999999999888776 2222322222 11222233333444455555777664 4666665
Q ss_pred HHHh
Q psy8869 441 RINK 444 (593)
Q Consensus 441 ~~~~ 444 (593)
.+..
T Consensus 483 ~l~~ 486 (632)
T PRK05506 483 RLHA 486 (632)
T ss_pred HHHH
Confidence 5543
No 22
>KOG0459|consensus
Probab=100.00 E-value=6.4e-57 Score=437.52 Aligned_cols=373 Identities=28% Similarity=0.409 Sum_probs=327.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHH---------------hhhhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATV---------------LSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~---------------~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
.+|.++|+.++||+|+||||+-+.++.. ..+.++.+-+..|+||.+.+|+++|.|+......|++
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 4689999999999999999999877521 2233455556668899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecCCC--CH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMV--DD 143 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~Dl~--~~ 143 (593)
..++++++|+|||..|..+|+.|+++||.++||++|..|.+ .||+||..+++.+++.++||+|||||-. +|
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 99999999999999999999999999999999999987654 6999999999999999999999999965 45
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCC-CCceEEEeccCccccC------CCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeE
Q psy8869 144 -EELLELVEIEIRELLNKYEFPG-NDIPIIKGSAKLALEG------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLL 215 (593)
Q Consensus 144 -~~~~~~~~~~~~~~l~~~~~~~-~~~~vi~~Sa~~g~~~------~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 215 (593)
+++|++++..+..+|..+++.. .+..++|+|+.+|.+. .++||.+.. ++..|++ +|...+..++|+++
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~---fl~~ld~-l~~~~R~~~GP~~~ 310 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPI---FLEYLDE-LPHLERILNGPIRC 310 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCc---cceehhc-cCcccccCCCCEEe
Confidence 6899999999999999988864 4677999999998762 368998764 4566666 77788999999999
Q ss_pred EEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEE
Q psy8869 216 PVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (593)
Q Consensus 216 ~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl 295 (593)
+|.+-|+ ..|+|+.|+|+||++++||.+.++|.+ ..+.|.+|......++.+.||+++-+.|+|++.++|..|.||
T Consensus 311 pI~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk--~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL 386 (501)
T KOG0459|consen 311 PVANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNK--TNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFIL 386 (501)
T ss_pred ehhhhcc--ccceEEEEEecccceecCCeEEEccCC--cceEEEEEecccceeeeccCCcceEEEecccchhhccCceEE
Confidence 9998884 578999999999999999999999855 678999999998899999999999999999999999999999
Q ss_pred ecCCCC-CcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEe------------cCCcccccCCCEEEEE
Q psy8869 296 AKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL------------PKNKEMVMPGDNVLIT 362 (593)
Q Consensus 296 ~~~~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~------------~~~~~~l~~gd~~~v~ 362 (593)
|+++++ ++.+.|.|+|.+|.|. +-|.+||.+++|++++-..+.|.+ .+.+.+++.|+.+.++
T Consensus 387 ~~~~n~~~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iar 461 (501)
T KOG0459|consen 387 CSPNNPCKSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIAR 461 (501)
T ss_pred ecCCCccccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEE
Confidence 999876 6779999999999986 469999999999998766655532 2356789999999999
Q ss_pred EEeCceeeeecC------CeEEEeeCCeEEEeeeecc
Q psy8869 363 VRLINPIAMEEG------LRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 363 ~~~~~p~~~~~~------~r~vlr~~~~~i~~G~v~~ 393 (593)
++...|+|++.+ +||.|||.|+|||+|+|+.
T Consensus 462 l~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~k 498 (501)
T KOG0459|consen 462 LETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLK 498 (501)
T ss_pred EecCCcEehhhcccchhhcceEEecCCcEEEEEEEEe
Confidence 999999999986 7999999999999999864
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=2.5e-54 Score=469.63 Aligned_cols=341 Identities=30% Similarity=0.491 Sum_probs=298.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh~~~~~~ 91 (593)
+.|+++||+|||||||+++|++. .+|+.++|+++|+|++..+..+.. ++..+.|||||||++|.++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~ 67 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN 67 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH
Confidence 46899999999999999999853 268889999999999998877765 4567899999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEE
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 171 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi 171 (593)
|+.++..+|++++|||+++|+.+||++|+.++..+++|++|||+||||+++. +.++.+..++.++++..++. ..|++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~~--~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGFA--EAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCCC--CCcEE
Confidence 9999999999999999999999999999999999999988888999999875 44556677888888776653 57899
Q ss_pred EeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecC
Q psy8869 172 KGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 251 (593)
Q Consensus 172 ~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~ 251 (593)
++||++| .++++|+++|... +.+..+.+.||+|+|+++|+++|.|+|++|+|.+|++++||++.+.|.+
T Consensus 145 ~VSA~tG----------~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~ 213 (614)
T PRK10512 145 VTAATEG----------RGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN 213 (614)
T ss_pred EEeCCCC----------CCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCC
Confidence 9999998 6889999999874 4455667899999999999999999999999999999999999999754
Q ss_pred CceEEEEEEEEecceecceeeecceEEEEecc-CCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCccccCCce
Q psy8869 252 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRG-TKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYR 330 (593)
Q Consensus 252 ~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~ 330 (593)
..++|++||.++.++++|.|||+|+++|++ ++..++++||+|++++++.++..+.+ ++... .+|..|++
T Consensus 214 --~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~---~l~~~-----~~l~~~~~ 283 (614)
T PRK10512 214 --KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIV---ELQTH-----TPLTQWQP 283 (614)
T ss_pred --CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEE---EEcCC-----ccCCCCCE
Confidence 678999999999999999999999999997 88899999999998876666665544 34432 47999999
Q ss_pred eEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEee--CCeEEEeeeecchhhhcc
Q psy8869 331 PQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--GVQQFIQDNLLTKEIVNS 399 (593)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~--~~~~i~~G~v~~~~~~~~ 399 (593)
+.+|+|+.++.|++... +.+.+++.+++|+++..|+||+||+ ..+|+|+|.||++..+.+
T Consensus 284 ~~~~~gt~~~~~~i~~l---------~~~~~~l~l~~p~~~~~gdr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 284 LHIHHAASHVTGRVSLL---------EDNLAELVLDTPLWLADNDRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred EEEEEcccEEEEEEEEc---------CCeEEEEEECCcccccCCCEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 99999999999999765 2357899999999999999999999 568999999999876655
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=9.3e-54 Score=447.76 Aligned_cols=353 Identities=31% Similarity=0.473 Sum_probs=297.2
Q ss_pred ccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-----------
Q psy8869 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET----------- 72 (593)
Q Consensus 4 ~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----------- 72 (593)
|.|++.++++||+++||+|||||||+++|++. ++|.+++|+++|+|++.++..++.
T Consensus 1 ~~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~ 67 (411)
T PRK04000 1 MMWEKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEA 67 (411)
T ss_pred CCcccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCcccc
Confidence 45788999999999999999999999999642 378999999999999987543222
Q ss_pred ---C------------CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCCCeEEEEEe
Q psy8869 73 ---K------------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLN 136 (593)
Q Consensus 73 ---~------------~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~ip~iiVvvN 136 (593)
. .+.++|||||||++|..+++.++..+|++++|+|++++. ..++.+|+..+..++++.+++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlN 147 (411)
T PRK04000 68 YTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQN 147 (411)
T ss_pred ccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEE
Confidence 1 257899999999999999999999999999999999987 799999999999999887788899
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEE
Q psy8869 137 KADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLP 216 (593)
Q Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 216 (593)
|+|+.+.++.. ....++..+++... ....|++++||++| .++++|+++|...++.|.++.+.|++|+
T Consensus 148 K~Dl~~~~~~~-~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gI~~L~~~L~~~l~~~~~~~~~~~r~~ 214 (411)
T PRK04000 148 KIDLVSKERAL-ENYEQIKEFVKGTV--AENAPIIPVSALHK----------VNIDALIEAIEEEIPTPERDLDKPPRMY 214 (411)
T ss_pred eeccccchhHH-HHHHHHHHHhcccc--CCCCeEEEEECCCC----------cCHHHHHHHHHHhCCCCCCCCCCCceEE
Confidence 99998753322 22234555554322 13579999999998 6899999999998888888889999999
Q ss_pred EEEEEEeCC--------CcEEEEEEEEeeeEecCCEEEEeecCC----------ceEEEEEEEEecceecceeeecceEE
Q psy8869 217 VEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIG 278 (593)
Q Consensus 217 i~~~~~~~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~~----------~~~~~v~si~~~~~~~~~a~aG~~v~ 278 (593)
|+++|.+++ +|+|++|+|.+|++++||.|.+.|.+. ...++|+||+.++.++++|.|||+|+
T Consensus 215 I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~ 294 (411)
T PRK04000 215 VARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVG 294 (411)
T ss_pred EEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEE
Confidence 999998866 467999999999999999999998642 12579999999999999999999999
Q ss_pred EEec---cCCccCCccceEEecCCCC-CcccEEEEEEEEeecCCCCC----CccccCCceeEEEEEeeeEEEEEEecCCc
Q psy8869 279 LLLR---GTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNK 350 (593)
Q Consensus 279 l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~ 350 (593)
++|+ +++..++++|+||++++.+ +.+.+|+|++.||.+..+++ .++|..||++++|+|+.++.|++...+
T Consensus 295 i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~-- 372 (411)
T PRK04000 295 VGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAR-- 372 (411)
T ss_pred EEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcC--
Confidence 9996 6777889999999999764 45689999999998732111 368999999999999999999998664
Q ss_pred ccccCCCEEEEEEEeCceeeeecCCeEEE--eeCC--eEEEeeee
Q psy8869 351 EMVMPGDNVLITVRLINPIAMEEGLRFAI--REGV--QQFIQDNL 391 (593)
Q Consensus 351 ~~l~~gd~~~v~~~~~~p~~~~~~~r~vl--r~~~--~~i~~G~v 391 (593)
++ .++++|.+|+|+.+|+||+| |+++ +++|.|.+
T Consensus 373 -----~~--~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~ 410 (411)
T PRK04000 373 -----KD--EAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 410 (411)
T ss_pred -----Cc--EEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEe
Confidence 23 57888999999999999999 7888 89999954
No 25
>KOG0463|consensus
Probab=100.00 E-value=5.5e-56 Score=426.07 Aligned_cols=361 Identities=24% Similarity=0.324 Sum_probs=309.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeE----------------------
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE---------------------- 69 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~---------------------- 69 (593)
..+|+++|++|+|||||++.|++...+++++.++. .++++++|.+.|.|.+...--
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARq--kLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQ--KLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHH--HHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 46999999999999999999999988888876654 489999999999998764211
Q ss_pred ---EeeCCeEEEEEecCChhhhHHHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH
Q psy8869 70 ---YETKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE 144 (593)
Q Consensus 70 ---~~~~~~~~~iiDtpGh~~~~~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~ 144 (593)
.+...+.++|||.+||++|+++++.|+. .+|+.+|+|.|+.|+...|+|||.++.++.+|.++| +||+|++++.
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvV-VTKIDMCPAN 289 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVV-VTKIDMCPAN 289 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEE-EEeeccCcHH
Confidence 1334567899999999999999999997 679999999999999999999999999999998875 6999999974
Q ss_pred HHHHHHHHHHHHHHhhcCCC---------------------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 145 ELLELVEIEIRELLNKYEFP---------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~---------------------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
-. ++....+..+++.-+.. ..-+|+|-+|..+| .++ +|+..+.++++
T Consensus 290 iL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG----------~NL-~LLkmFLNlls 357 (641)
T KOG0463|consen 290 IL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG----------TNL-PLLKMFLNLLS 357 (641)
T ss_pred HH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC----------CCh-HHHHHHHhhcC
Confidence 33 33333566666653321 23578888888887 444 45555555554
Q ss_pred -CCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecC--CceEEEEEEEEecceecceeeecceEEEE
Q psy8869 204 -TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK--DTVKTTCTGVEMFRKLLDQGQAGDNIGLL 280 (593)
Q Consensus 204 -~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~--~~~~~~v~si~~~~~~~~~a~aG~~v~l~ 280 (593)
....+.+.|..|.|+++|.++|+|+|+.|+..+|+++.+|.+.++|.. ++.+..|+|||+.+-|+..+++||.++++
T Consensus 358 ~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFA 437 (641)
T KOG0463|consen 358 LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFA 437 (641)
T ss_pred cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhH
Confidence 334467789999999999999999999999999999999999999864 46789999999999999999999999999
Q ss_pred eccCCccCCccceEEecCCC-CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEE
Q psy8869 281 LRGTKREDVERGQVLAKPGS-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNV 359 (593)
Q Consensus 281 l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~ 359 (593)
|+.++..++++|||+++++. |+++|.|+|+|.+|+|| ++|.+.|+.++|||+++|+|++. ..++++|+.||.+
T Consensus 438 LKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAtiv-sM~kdcLRTGDka 511 (641)
T KOG0463|consen 438 LKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATIV-SMGKDCLRTGDKA 511 (641)
T ss_pred hhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeeee-ecChhhhhcCCcc
Confidence 99999999999999999985 88999999999999997 78999999999999999999995 5677899999999
Q ss_pred EEEEEeC-ceeeeecCCeEEEeeCCeEEEeeeecch
Q psy8869 360 LITVRLI-NPIAMEEGLRFAIREGVQQFIQDNLLTK 394 (593)
Q Consensus 360 ~v~~~~~-~p~~~~~~~r~vlr~~~~~i~~G~v~~~ 394 (593)
.|+|+|. +|+|+.+|+|++||++ +|-|+|.|...
T Consensus 512 ~V~FrFIkqPEYir~gqrlVFREG-RTKAVGti~~~ 546 (641)
T KOG0463|consen 512 KVQFRFIKQPEYIRPGQRLVFREG-RTKAVGTISSV 546 (641)
T ss_pred eEEEEEecCcceecCCceEEeecc-cceeeeeeccc
Confidence 9999997 7999999999999987 99999987544
No 26
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=7.1e-53 Score=441.87 Aligned_cols=347 Identities=33% Similarity=0.489 Sum_probs=292.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe--------------e---
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------T--- 72 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------~--- 72 (593)
+++++|+++||+|||||||+++|++. .+|.+++|+++|+|+++.+..++ +
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 67899999999999999999999642 37899999999999998755432 1
Q ss_pred ---------CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 73 ---------KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 73 ---------~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
..+.++|||||||++|.++|..++..+|+++||+||++|. ..|+++|+..+..+++++++|++||+|+++
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1467899999999999999999999999999999999988 899999999999999988888899999987
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEE
Q psy8869 143 DEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS 222 (593)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~ 222 (593)
.+... ....++.++++... ...+|++++||++| .++++|+++|...+|.|.++.+.|++|+|+++|.
T Consensus 149 ~~~~~-~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 149 KEKAL-ENYEEIKEFVKGTV--AENAPIIPVSALHN----------ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HHHHH-HHHHHHHhhhhhcc--cCCCeEEEEECCCC----------CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 53322 22335555555432 13689999999998 6899999999988888888889999999999998
Q ss_pred eCC--------CcEEEEEEEEeeeEecCCEEEEeecCC----------ceEEEEEEEEecceecceeeecceEEEEec--
Q psy8869 223 ISG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR-- 282 (593)
Q Consensus 223 ~~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~~----------~~~~~v~si~~~~~~~~~a~aG~~v~l~l~-- 282 (593)
+.+ +|+|++|+|.+|+|++||.|.+.|... ...++|+||+.++.++++|.|||+|+++|+
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~ 295 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLD 295 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccC
Confidence 876 567999999999999999999998631 134799999999999999999999999984
Q ss_pred -cCCccCCccceEEecCCC-CCcccEEEEEEEEeecCCC----CCCccccCCceeEEEEEeeeEEEEEEecCCcccccCC
Q psy8869 283 -GTKREDVERGQVLAKPGS-IKPHKHFTGEIYALSKDEG----GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPG 356 (593)
Q Consensus 283 -~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g 356 (593)
+++..++++|++|++++. ++.+..|+|++.||.+..+ .+.++|..||++++|+|+.++.|++...++
T Consensus 296 ~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~------- 368 (406)
T TIGR03680 296 PALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK------- 368 (406)
T ss_pred CCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC-------
Confidence 677789999999999976 4456899999999986321 123689999999999999999999986542
Q ss_pred CEEEEEEEeCceeeeecCCeEEE--eeCC--eEEEeeee
Q psy8869 357 DNVLITVRLINPIAMEEGLRFAI--REGV--QQFIQDNL 391 (593)
Q Consensus 357 d~~~v~~~~~~p~~~~~~~r~vl--r~~~--~~i~~G~v 391 (593)
+ .+++++.+|+|+..|+||+| |.++ +++|.|.|
T Consensus 369 ~--~~~l~l~~p~~~~~g~r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 369 D--EIEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred c--EEEEEECCcEEcCCCCEEEEEEecCCceEEEEEEEe
Confidence 3 47888999999999999999 5677 78888864
No 27
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-51 Score=409.36 Aligned_cols=340 Identities=30% Similarity=0.485 Sum_probs=300.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
+.|+.+||+|||||||+.+|++. ..|.+++|.++|+|+|+.+++++.+++.+.|+|.|||++|+++|
T Consensus 1 mii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~m 67 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNL 67 (447)
T ss_pred CeEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHH
Confidence 36899999999999999999864 36899999999999999999999999999999999999999999
Q ss_pred HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ 172 (593)
+.++...|+++||||+++|+..||.||+..+..+|+++.|||+||+|+++.+ + +.+.++++++.+.+ .+.++++
T Consensus 68 iag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~-r---~e~~i~~Il~~l~l--~~~~i~~ 141 (447)
T COG3276 68 LAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA-R---IEQKIKQILADLSL--ANAKIFK 141 (447)
T ss_pred HhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH-H---HHHHHHHHHhhccc--ccccccc
Confidence 9999999999999999999999999999999999999988899999999874 3 33344555555554 3788999
Q ss_pred eccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCC
Q psy8869 173 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD 252 (593)
Q Consensus 173 ~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~ 252 (593)
+|+.+| .|+++|.+.|.+....+.++.+.||+++|++.|+++|.|+|++|++.||++++||++++.|.+
T Consensus 142 ~s~~~g----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~- 210 (447)
T COG3276 142 TSAKTG----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN- 210 (447)
T ss_pred cccccC----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCC-
Confidence 999998 799999999988654567889999999999999999999999999999999999999999865
Q ss_pred ceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCccccCCceeE
Q psy8869 253 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQ 332 (593)
Q Consensus 253 ~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~ 332 (593)
..++|+|||.+++++++|.||++|+++|+|++.+++.||++|+++++..+++.+.+.+.|.+.. ..++..|....
T Consensus 211 -k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~h 285 (447)
T COG3276 211 -KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPVH 285 (447)
T ss_pred -CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceEE
Confidence 7899999999999999999999999999999999999999999999888899999998887554 35799999999
Q ss_pred EEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCC--eEEEeeeecchhhh
Q psy8869 333 FYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGV--QQFIQDNLLTKEIV 397 (593)
Q Consensus 333 ~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~--~~i~~G~v~~~~~~ 397 (593)
+|+|....+|++...+.. +.+.+..|++...+++++||++- .+.++++++....+
T Consensus 286 i~~g~~~~~~~i~~l~~~----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl~~~~~ 342 (447)
T COG3276 286 IHVGLRSVTGRIVPLEKN----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVLSLNLP 342 (447)
T ss_pred EEEeccccceEeeecccc----------ceeeeecccccccCceEEEEcccceeeeccceEEecCCC
Confidence 999999999998754432 57778899999999999999853 56666677555443
No 28
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.6e-50 Score=439.18 Aligned_cols=336 Identities=29% Similarity=0.483 Sum_probs=286.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++||+|||||||+++|++. .+|..++|..+|+|++..+..+++++..+.|||+|||++|.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~-------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI-------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc-------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999853 15778899999999999988888888999999999999999999
Q ss_pred HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ 172 (593)
+.++.++|++++|+|+++|...||.+|+..+..+++|++||++||||+++. +.++.+..++.++++..++. ..+|+++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-~~~~~~~~ei~~~l~~~~~~-~~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-EEIKRTEMFMKQILNSYIFL-KNAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-HHHHHHHHHHHHHHHHhCCC-CCCcEEE
Confidence 999999999999999999999999999999999999988888999999985 44555666788888776653 2579999
Q ss_pred eccCccccCCCCCCCcCcHHHHHHHhhhhCCCC-CCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecC
Q psy8869 173 GSAKLALEGDTGPLGEQSILSLSKALDTYIPTP-NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK 251 (593)
Q Consensus 173 ~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~ 251 (593)
+||++| .+++++.+.|...+... ....+.||+|+|+++|+++|.|+|++|+|.+|++++||+|.++|.+
T Consensus 146 vSA~tG----------~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 146 TSAKTG----------QGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EeCCCC----------CCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC
Confidence 999998 56777777766544321 1125789999999999999999999999999999999999999854
Q ss_pred CceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCccccCCcee
Q psy8869 252 DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRP 331 (593)
Q Consensus 252 ~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~ 331 (593)
..++|++||.+++++++|.|||+|+++|++++..++++|.+++++..+ ...+.+.+.. . .+|..|+++
T Consensus 216 --~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~--~~~~~~~~~~---~-----~~l~~~~~~ 283 (581)
T TIGR00475 216 --HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP--KLRVVVKFIA---E-----VPLLELQPY 283 (581)
T ss_pred --ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC--CceEEEEEEc---C-----CccCCCCeE
Confidence 679999999999999999999999999999999999999888766432 2233333222 1 368889999
Q ss_pred EEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeC-CeEEEeeeecch
Q psy8869 332 QFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG-VQQFIQDNLLTK 394 (593)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~-~~~i~~G~v~~~ 394 (593)
.+|+|+.++.|++...++. .+++++.+|+++..|+||++|++ .+|+|+|.|+++
T Consensus 284 ~~~~gt~~~~~~i~~l~~~---------~~~l~l~~P~~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 284 HIAHGMSVTTGKISLLDKG---------IALLTLDAPLILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred EEEEeceEEEEEEEEccCc---------EEEEEECCceecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 9999999999999766432 67899999999999999999994 489999999998
No 29
>KOG1143|consensus
Probab=100.00 E-value=2.5e-51 Score=393.76 Aligned_cols=362 Identities=23% Similarity=0.300 Sum_probs=312.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEE--------------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-------------------- 70 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-------------------- 70 (593)
-.++++++|..|+|||||++.|++...+++.+.++.+ ++++.||...|.|..+++..+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln--~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLN--IFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeee--hhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 3579999999999999999999999999888877754 899999999999988764321
Q ss_pred -eeCCeEEEEEecCChhhhHHHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHH
Q psy8869 71 -ETKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELL 147 (593)
Q Consensus 71 -~~~~~~~~iiDtpGh~~~~~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~ 147 (593)
+.+.+.++|||.+||.+|.++++.++. .+|+++|||+|..|+...|+|||.++.++++|.|++ ++|||+++.+ ..
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvl-vtK~Dl~~~~-~~ 321 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVL-VTKMDLVDRQ-GL 321 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEE-EEeeccccch-hH
Confidence 335677999999999999999999987 679999999999999999999999999999998875 6999999973 33
Q ss_pred HHHHHHHHHHHhhcCCC---------------------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC
Q psy8869 148 ELVEIEIRELLNKYEFP---------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (593)
Q Consensus 148 ~~~~~~~~~~l~~~~~~---------------------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~ 206 (593)
+....++.++++..+.. ++-+|++.+|+.+| +++..|..+ .+.+++..
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG----------egl~ll~~f-Ln~Lsp~~ 390 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG----------EGLRLLRTF-LNCLSPAG 390 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc----------cchhHHHHH-HhhcCCcC
Confidence 44555777777776643 35689999999998 566544444 44455433
Q ss_pred CC------CCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCC--ceEEEEEEEEecceecceeeecceEE
Q psy8869 207 RA------IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD--TVKTTCTGVEMFRKLLDQGQAGDNIG 278 (593)
Q Consensus 207 ~~------~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~--~~~~~v~si~~~~~~~~~a~aG~~v~ 278 (593)
.. ...|..|.|+++|+++.+|.|+.|.+.+|.++.|+.+.++|.++ +.+++|.||++++.++..+.|||.++
T Consensus 391 ~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAs 470 (591)
T KOG1143|consen 391 TAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAAS 470 (591)
T ss_pred ChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCcccee
Confidence 22 24688899999999999999999999999999999999999876 47899999999999999999999999
Q ss_pred EEeccCCccCCccceEEecCC-CCCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCC
Q psy8869 279 LLLRGTKREDVERGQVLAKPG-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGD 357 (593)
Q Consensus 279 l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd 357 (593)
+.|...+...+++||||..+. +|+.+..|+|.+.+|-|. +.|..|++.++|+|+++|+|.|+-+.+.++|++|+
T Consensus 471 lsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~ 545 (591)
T KOG1143|consen 471 LSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDADCLRTGK 545 (591)
T ss_pred eeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhh-----HhheecceEEEEEcceeeeeeeeeecccccccCCc
Confidence 999877778899999999875 477789999999999874 78999999999999999999999888999999999
Q ss_pred EEEEEEEeC-ceeeeecCCeEEEeeCCeEEEeeeecc
Q psy8869 358 NVLITVRLI-NPIAMEEGLRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 358 ~~~v~~~~~-~p~~~~~~~r~vlr~~~~~i~~G~v~~ 393 (593)
+|.|.|+|. +|+|+.+|.+++||+| .|-|+|.|..
T Consensus 546 ~AvV~f~F~~hPEyir~G~~ilfReG-~tKGiG~Vt~ 581 (591)
T KOG1143|consen 546 WAVVKFCFAYHPEYIREGSPILFREG-KTKGIGEVTK 581 (591)
T ss_pred eEEEEEEecCCchhccCCCeeeeecc-cccccceEEE
Confidence 999999986 8999999999999987 8999997643
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-44 Score=337.99 Aligned_cols=347 Identities=33% Similarity=0.510 Sum_probs=289.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe--------------e---
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--------------T--- 72 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------~--- 72 (593)
.+.+||+++||+|||||||+.+|++. .+|+|++|.+||+||.+.+.... .
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 68899999999999999999999875 37999999999999998654310 0
Q ss_pred ---------CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 73 ---------KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 73 ---------~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
--+.+.|+|+|||+-.+.+|++|+...|+++|||+|++ ..++||+|||..+...|++++|++.||+|+++
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 13578899999999999999999999999999999998 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEE
Q psy8869 143 DEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS 222 (593)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~ 222 (593)
.++..+.. +++++|++... .++.|++|+||..+ .+++.|+++|..++|.|.++.+.|.+|.|.+.|.
T Consensus 155 ~E~AlE~y-~qIk~FvkGt~--Ae~aPIIPiSA~~~----------~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 155 RERALENY-EQIKEFVKGTV--AENAPIIPISAQHK----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHHHHHHH-HHHHHHhcccc--cCCCceeeehhhhc----------cCHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 86655554 47888888654 35899999999997 6899999999999999999999999999999999
Q ss_pred eCC--------CcEEEEEEEEeeeEecCCEEEEeecC----C------ceEEEEEEEEecceecceeeecceEEEEec--
Q psy8869 223 ISG--------RGTVVTGRVERGIVRVGEELEIIGIK----D------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR-- 282 (593)
Q Consensus 223 ~~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~----~------~~~~~v~si~~~~~~~~~a~aG~~v~l~l~-- 282 (593)
+.. +|-|+.|.+.+|.+++||++.+.|.- . ....+|.|++.....+++|.||-.+++-..
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lD 301 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLD 301 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccC
Confidence 854 45589999999999999999998732 1 134678899988999999999999999642
Q ss_pred -cCCccCCccceEEecCCCC-CcccEEEEEEEEeecCCC----CCCccccCCceeEEEEEeeeEEEEEEecCCcccccCC
Q psy8869 283 -GTKREDVERGQVLAKPGSI-KPHKHFTGEIYALSKDEG----GRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPG 356 (593)
Q Consensus 283 -~~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g 356 (593)
.+.+.|--.|.|+..++.+ +...+|+.+..+|..--+ -+-.+|+.|...++.+|+....+.++...+
T Consensus 302 P~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~------- 374 (415)
T COG5257 302 PTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKK------- 374 (415)
T ss_pred cchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecC-------
Confidence 2234566788899989875 446899999999874211 123479999999999999888888875543
Q ss_pred CEEEEEEEeCceeeeecCCeEEEee--CC--eEEEeeee
Q psy8869 357 DNVLITVRLINPIAMEEGLRFAIRE--GV--QQFIQDNL 391 (593)
Q Consensus 357 d~~~v~~~~~~p~~~~~~~r~vlr~--~~--~~i~~G~v 391 (593)
| .+++.|.+|+|.+.|.|+.+.. ++ +.||.|.+
T Consensus 375 d--~~ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~i 411 (415)
T COG5257 375 D--EIEVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTI 411 (415)
T ss_pred c--eEEEEeccceecCCCCEEEEEeeecceEEEEeEEEE
Confidence 2 4789999999999999998843 33 68888864
No 31
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.3e-39 Score=350.69 Aligned_cols=281 Identities=28% Similarity=0.386 Sum_probs=233.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
.||+++||+|||||||+++|+..............+.+|..+.|+++|+|+......+++.++.++|||||||.+|..++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 58999999999999999999975432222111223579999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC--CCceE
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDIPI 170 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~v 170 (593)
..+++.+|+++|||||.+|.+.||++|+..+...++|.+ |++||||+.+. .++.+..++.+++..++... ..+|+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~~~a--~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPSA--RPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCCCCc--CHHHHHHHHHHHHHhhccccccccCcE
Confidence 999999999999999999999999999999999999965 56899998753 22334456666666555432 25799
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeec
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGI 250 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~ 250 (593)
+++||++|++..+.-....++..|++.+.+.+|+|..+.++||+++|++++..++.|+++.|+|.+|+|++||.|.+.|.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999998653321112347899999999999999888899999999999999999999999999999999999999875
Q ss_pred CC-ceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCCC
Q psy8869 251 KD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (593)
Q Consensus 251 ~~-~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (593)
+. ..+.+|++|+.+ +.++++|.|||+|+++ ++ .++.+||+||+++.
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETIADPEV 289 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEEeCCCc
Confidence 32 346789999875 6789999999999884 54 57889999998764
No 32
>KOG0461|consensus
Probab=100.00 E-value=4.8e-39 Score=306.46 Aligned_cols=364 Identities=27% Similarity=0.451 Sum_probs=275.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee---------CCeEEEEEe
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET---------KARHYAHVD 81 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~~~iiD 81 (593)
-.+|++++||+|||||||..+|..... ....|.++..++||+|.|+.+..+.. +.-+++++|
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S---------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS---------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc---------chhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 348999999999999999999975421 12369999999999999998766532 344679999
Q ss_pred cCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH---HHHHHHHHHHHHHH
Q psy8869 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE---ELLELVEIEIRELL 158 (593)
Q Consensus 82 tpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~---~~~~~~~~~~~~~l 158 (593)
+|||...+++.+.|+...|.+++|||+..|.+.||.|||.+...+.-+ ++|++||+|...+. ...+.....+++-|
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888777655 56678999988762 33445555677778
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeee
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~ 238 (593)
+..++. .+.|++++||+.|. ++..++.+|.+.|.+.+-.|.++.+.||.|.|+++|.++|.|+|++|+|.+|.
T Consensus 156 e~t~f~-g~~PI~~vsa~~G~------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~ 228 (522)
T KOG0461|consen 156 ESTGFD-GNSPIVEVSAADGY------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGV 228 (522)
T ss_pred HhcCcC-CCCceeEEecCCCc------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeE
Confidence 888886 46899999999983 23367899999999999999999999999999999999999999999999999
Q ss_pred EecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCC
Q psy8869 239 VRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDE 318 (593)
Q Consensus 239 l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~ 318 (593)
++.|+.+.+...+ ..-+|+|+++++.++.+|.+||++++++...+...+.|| +++.++.+++....-+.+-.+.-.
T Consensus 229 ~~ln~~iE~PAL~--e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~vepI~yf- 304 (522)
T KOG0461|consen 229 LRLNTEIEFPALN--EKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATVEPIQYF- 304 (522)
T ss_pred EecCcEEeecccc--hhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc-ccCCCcccceeeeeeEeecchHHH-
Confidence 9999999985433 445899999999999999999999999998888889999 566677666655433333222111
Q ss_pred CCCCccccCCceeEEEEEeeeEEEEEEecC----------------------CcccccCCCEEEEEEEeCceeeeecCCe
Q psy8869 319 GGRHTPFFSNYRPQFYFRTTDVTGSIELPK----------------------NKEMVMPGDNVLITVRLINPIAMEEGLR 376 (593)
Q Consensus 319 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------------------~~~~l~~gd~~~v~~~~~~p~~~~~~~r 376 (593)
..+|.......+-+|.-.+.|.+.... -|..+.++|...+-|+|++|+++-++..
T Consensus 305 ---r~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~ 381 (522)
T KOG0461|consen 305 ---RKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSN 381 (522)
T ss_pred ---hhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCccccc
Confidence 123443433333334333333332111 1234667777788999999998877643
Q ss_pred EEE-------eeCCeEEEeeeecchhhhc
Q psy8869 377 FAI-------REGVQQFIQDNLLTKEIVN 398 (593)
Q Consensus 377 ~vl-------r~~~~~i~~G~v~~~~~~~ 398 (593)
.+. ..++.-.|+--++....++
T Consensus 382 ~i~s~ld~d~h~~~CRlAF~Gi~~~~l~~ 410 (522)
T KOG0461|consen 382 PIMSALDEDQHGSGCRLAFSGIFSQILPE 410 (522)
T ss_pred HHHHhhhhhcCCCceEEEeeeehhhhCcc
Confidence 221 1133444443355555544
No 33
>KOG0462|consensus
Probab=100.00 E-value=4.3e-38 Score=317.49 Aligned_cols=334 Identities=25% Similarity=0.337 Sum_probs=256.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC---eEEEEEecCChh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA---RHYAHVDCPGHA 86 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpGh~ 86 (593)
.+..|++|+.|+|||||||..+|+..+..... ......+||+...|++||||+......+-+.+ +.+++||||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 56789999999999999999999987653322 11223479999999999999998766665555 888999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
+|..+..+.+..||++||||||.+|++.||.-.+.+|...|+.. |.++||+|+..++ -+.++.++.+++. ++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~i-IpVlNKIDlp~ad--pe~V~~q~~~lF~---~~-- 208 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAI-IPVLNKIDLPSAD--PERVENQLFELFD---IP-- 208 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeE-EEeeeccCCCCCC--HHHHHHHHHHHhc---CC--
Confidence 99999999999999999999999999999999999999999994 5568999998752 2345556666554 32
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEE
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELE 246 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~ 246 (593)
..+++.+||++| .+++++|+++.+.+|+|....++||++.+.+.+....+|.++.++|..|.+++||+|.
T Consensus 209 ~~~~i~vSAK~G----------~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~ 278 (650)
T KOG0462|consen 209 PAEVIYVSAKTG----------LNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQ 278 (650)
T ss_pred ccceEEEEeccC----------ccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEE
Confidence 347999999999 5788999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCceEEEEEEEEecc-eecceeeecceEEEEeccCC-ccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCcc
Q psy8869 247 IIGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTP 324 (593)
Q Consensus 247 i~p~~~~~~~~v~si~~~~-~~~~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~ 324 (593)
...+++.+.+++.++...+ .++....||| ||....++. -.+.+.||++++...-.+.. .+ |
T Consensus 279 ~~~t~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~~~~~v~-------tl---------~ 341 (650)
T KOG0462|consen 279 SAATGKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKSVTKAVE-------TL---------P 341 (650)
T ss_pred EeecCcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecccCcccC-------cC---------C
Confidence 9877777888888887654 4566666665 333334444 46788899998664211111 11 2
Q ss_pred ccCCceeEEEEEee--eEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEe
Q psy8869 325 FFSNYRPQFYFRTT--DVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIR 380 (593)
Q Consensus 325 i~~g~~~~~~~~~~--~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr 380 (593)
.....+|++++|.. +++-..++....+.|..||.+ +.+..+.+-++..|-|+.|+
T Consensus 342 ~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~s-v~v~~~~s~aLg~gwr~gfl 398 (650)
T KOG0462|consen 342 GFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDES-VTVIKESSGALGQGWRLGFL 398 (650)
T ss_pred CCCCCcceEEeccccCccchhhhHHHHHHHHhccccc-ceeeecCCcccccceEeecc
Confidence 23344566777642 333333344445667788875 67777777777776665543
No 34
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-37 Score=306.12 Aligned_cols=287 Identities=28% Similarity=0.370 Sum_probs=239.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+..||+|+.|+|||||||+..|+.+...-..........||.+..|++||+||-.......+++.+++|+|||||.+|-
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 35689999999999999999999987544333333334579999999999999999888899999999999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC--CC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--ND 167 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 167 (593)
.+.-+.++..|.++|+|||.+|..+||+-.+..+.++|++.++ ||||+|..++ +-+++..++-+++..++-.. -+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIV-VvNKiDrp~A--rp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV-VINKIDRPDA--RPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEE-EEeCCCCCCC--CHHHHHHHHHHHHHHhCCChhhCC
Confidence 9999999999999999999999999999999999999999776 5799999875 12334455666666665433 26
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEE
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 247 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i 247 (593)
+|++..||+.|+.+.++-.....+..|++.|..++|.|..+.++||.|.|...-+-+..|.+..|+|.+|++++||.+.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~ 239 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVAL 239 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEE
Confidence 89999999999776544333456889999999999999999999999999999888999999999999999999999988
Q ss_pred eecCC-ceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCCCCCc
Q psy8869 248 IGIKD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 303 (593)
Q Consensus 248 ~p~~~-~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~ 303 (593)
...+. ....+|..+..+ +.++++|.|||+|++ +|+ .++..|+++|+++.+.+
T Consensus 240 i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVai--aG~--~~~~igdTi~d~~~~~a 296 (603)
T COG1217 240 IKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI--AGL--EDINIGDTICDPDNPEA 296 (603)
T ss_pred EcCCCcEEeeEEEeeeeccceeeeecccccccCEEEE--cCc--ccccccccccCCCCccC
Confidence 75332 356777777654 578999999999988 555 57788999999976543
No 35
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=328.93 Aligned_cols=284 Identities=27% Similarity=0.342 Sum_probs=229.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
+...||+++||+|||||||+++|+..............+.+|..+.|+++|+|+......+++++..+++||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 45789999999999999999999974332211111122579999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC--CC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--ND 167 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 167 (593)
..+..+++.+|++|+|+|+.+|...||+.++..+..+++|.+ |++||+|+.+. .++.+..++.+++..++... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~a--~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPGA--RPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCCC--chhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999999999999999999999999975 56899998753 22334445666655444321 35
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEE
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEI 247 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i 247 (593)
+|++++||++|++..+.-....++..|++.+..++|+|..+.++||+++|++++..++.|++++|+|.+|+|+.||.|.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEE
Confidence 89999999999753221111136889999999999999888899999999999999999999999999999999999998
Q ss_pred eecCC-ceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCCC
Q psy8869 248 IGIKD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (593)
Q Consensus 248 ~p~~~-~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (593)
.+.+. ....+|.+|... +.++++|.|||++++ .++ .++..||+||+++.
T Consensus 240 ~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl~~~~~ 293 (607)
T PRK10218 240 IDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNISDTVCDTQN 293 (607)
T ss_pred ecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccCcEEecCCC
Confidence 76422 235778888655 578999999999997 443 56889999997753
No 36
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-37 Score=307.06 Aligned_cols=334 Identities=24% Similarity=0.321 Sum_probs=258.0
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-----CCeEEEEEec
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-----KARHYAHVDC 82 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDt 82 (593)
+.+...|++|+.|.|||||||..+|++.+....... ...+.+|...-|++||+|+......+.+ +.+.++||||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Re-m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHH-HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 456788999999999999999999997654322111 1234689999999999999987665543 3477889999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|||-+|..+..+.+..|.+++|||||++|++.||..+..++...+.. +|-|+||+||+.++ -+.++.++++.+ |
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~i---G 157 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDII---G 157 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHHHh---C
Confidence 99999999999999999999999999999999999999999999998 44568999998753 133555666554 5
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVG 242 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~g 242 (593)
++. ...+.+||++| .|+++++++|...+|+|..+.+.|++..|.+.+..+..|.|+..||..|++++|
T Consensus 158 id~--~dav~~SAKtG----------~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~g 225 (603)
T COG0481 158 IDA--SDAVLVSAKTG----------IGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKG 225 (603)
T ss_pred CCc--chheeEecccC----------CCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCC
Confidence 653 34889999998 689999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCceEEEEEEEEec-ceecceeeecceEEEEeccCCc-cCCccceEEecCCCCCcccEEEEEEEEeecCCCC
Q psy8869 243 EELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGG 320 (593)
Q Consensus 243 d~v~i~p~~~~~~~~v~si~~~-~~~~~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~ 320 (593)
|++.+..++....+.-.++... ..+.+...||| ||.-..+++. .+.+.||++...+.| +.. .|+
T Consensus 226 dki~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~~p--~~e------~Lp----- 291 (603)
T COG0481 226 DKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLASNP--ATE------PLP----- 291 (603)
T ss_pred CEEEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccCCC--ccc------cCC-----
Confidence 9999997665555544555443 34678899997 5555566655 588999999855422 110 111
Q ss_pred CCccccCCceeEEEEEeeeEEE--EEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEE
Q psy8869 321 RHTPFFSNYRPQFYFRTTDVTG--SIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAI 379 (593)
Q Consensus 321 ~~~~i~~g~~~~~~~~~~~~~~--~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vl 379 (593)
-..-.+|++++|.--..+ .-.+.+..+.|..||.+ .+++++.+.++..|.|+.|
T Consensus 292 ----Gfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDas-l~~E~EtS~ALGfGfRcGF 347 (603)
T COG0481 292 ----GFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS-LTYEPETSQALGFGFRCGF 347 (603)
T ss_pred ----CCCcCCceEEEeecccChhHHHHHHHHHHhcccccce-eeeccccchhccCceeehh
Confidence 111224788888422211 11123445678899986 7999999999999888765
No 37
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.5e-35 Score=320.34 Aligned_cols=268 Identities=26% Similarity=0.370 Sum_probs=219.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-----CeEEEEEecCCh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCPGH 85 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpGh 85 (593)
...||+++||+|||||||+++|+.......... ...+++|..+.|+++|+|++.....+.+. ...++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 467999999999999999999997643222111 23457899999999999999876665442 367899999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+|...+..++..+|++|+|+|+++|...|+.+++..+...++| +|+++||+|+.+.. .+.+..++.+. +++.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~---lg~~- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEV---IGLD- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHH---hCCC-
Confidence 99999999999999999999999999999999999888888998 45568999997532 12222334333 3332
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEE
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 245 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v 245 (593)
..+++++||++| .++.+|+++|.+.+|+|..+.+.|++++|++++..++.|++++|+|.+|+|+.||.|
T Consensus 154 -~~~vi~vSAktG----------~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v 222 (595)
T TIGR01393 154 -ASEAILASAKTG----------IGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKI 222 (595)
T ss_pred -cceEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEE
Confidence 235899999998 689999999999999998889999999999999999999999999999999999999
Q ss_pred EEeecCCceEEEEEEEEecc---eecceeeecceEEEEeccCCc-cCCccceEEecCCC
Q psy8869 246 EIIGIKDTVKTTCTGVEMFR---KLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAKPGS 300 (593)
Q Consensus 246 ~i~p~~~~~~~~v~si~~~~---~~~~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~~~ 300 (593)
.+.+++ ...+|.+|..++ .++++|.||| +++.+++++. .+++.||+|++++.
T Consensus 223 ~~~~~~--~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 223 RFMSTG--KEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKN 278 (595)
T ss_pred EEecCC--CeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCCC
Confidence 998754 456788887665 6889999999 6776677654 68999999997753
No 38
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=2.3e-35 Score=320.89 Aligned_cols=270 Identities=27% Similarity=0.373 Sum_probs=220.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-----CeEEEEEecC
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCP 83 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtp 83 (593)
.+...||+++||+|||||||+++|+.......... ...+++|..+.|+++|+|+......+.+. ++.++|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~-~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc-cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 34678999999999999999999997543322211 13467899999999999999876665442 5778999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
||.+|...+..++..+|++|+|+|+++|.+.||.+++..+...++| +|+++||+|+.+.. .+.+..++.+. +++
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~ 156 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIEDV---IGI 156 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHHH---hCC
Confidence 9999999999999999999999999999999999999998888999 55578999987532 12223334333 333
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd 243 (593)
. ..+++++||++| .++.+|+++|.+.+|+|..+.+.|+++.|.+++..++.|+++.|+|.+|+|+.||
T Consensus 157 ~--~~~vi~iSAktG----------~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd 224 (600)
T PRK05433 157 D--ASDAVLVSAKTG----------IGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGD 224 (600)
T ss_pred C--cceEEEEecCCC----------CCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCC
Confidence 2 235899999998 6899999999999999988889999999999999999999999999999999999
Q ss_pred EEEEeecCCceEEEEEEEEec---ceecceeeecceEEEEeccCC-ccCCccceEEecCCC
Q psy8869 244 ELEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGS 300 (593)
Q Consensus 244 ~v~i~p~~~~~~~~v~si~~~---~~~~~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~ 300 (593)
.|.+.|.+ ...+|.+|... ..++++|.||| ++..+.+++ ..+++.||+|++.+.
T Consensus 225 ~i~~~~~~--~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 225 KIKMMSTG--KEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred EEEEecCC--ceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCCC
Confidence 99998754 45678887754 47899999999 555556664 368999999997754
No 39
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=100.00 E-value=4.3e-35 Score=273.94 Aligned_cols=178 Identities=60% Similarity=1.089 Sum_probs=160.5
Q ss_pred cccceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhh
Q psy8869 416 NNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLV 495 (593)
Q Consensus 416 ~~~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 495 (593)
++.++|||++|++|+|+++++.|++++...++++.++++|+|+++..++++|+++.+.+|||||||||++++.++.|..+
T Consensus 3 ~~~~~WYvl~~~~~~E~~v~~~L~~~~~~~~i~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 82 (181)
T PRK05609 3 SMKKRWYVVQTYSGYEKKVKENLENRIETLGMEDLIGEVLVPTEEVVEVKNGKKKKVERKFFPGYVLVKMVMTDESWHLV 82 (181)
T ss_pred CCCCeEEEEEeECCcHHHHHHHHHHHHHHCCCcceeeEEEeeeEEEEEccCCEEEEEEEecCCcEEEEEEEeCccHhHHh
Confidence 45578999999999999999999998888888777899999999999889999999999999999999999888889999
Q ss_pred hccCCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEE
Q psy8869 496 KNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVT 575 (593)
Q Consensus 496 ~~~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~ 575 (593)
++++|+.+|+++.++.|.+||++||+.|+..+.++.........+++||+|+|++|||+|++|.|.++++++++++|.++
T Consensus 83 ~~~~gv~~~v~~~g~~p~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~ 162 (181)
T PRK05609 83 RNTPGVTGFVGSTGSKPTPLSEKEVEKILKQLQEGVEKPKPKVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVS 162 (181)
T ss_pred hcCCCeEEEecCCCCCcccCCHHHHHHHHHHhhcccccCccccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEE
Confidence 99999999998227789999999999999866554433344567899999999999999999999999988889999999
Q ss_pred ecCcceEEeeccCceeeC
Q psy8869 576 IFGRATPVELEFNQVEKI 593 (593)
Q Consensus 576 ~~g~~~~v~~~~~~l~~~ 593 (593)
+||+.+.|+++.++|+++
T Consensus 163 ~~G~~~~v~l~~~~l~~~ 180 (181)
T PRK05609 163 IFGRETPVELEFSQVEKI 180 (181)
T ss_pred ECCCceEEEEchHHEEEc
Confidence 999999999999999875
No 40
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=100.00 E-value=5.2e-35 Score=270.66 Aligned_cols=171 Identities=54% Similarity=1.016 Sum_probs=155.9
Q ss_pred eEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhccCC
Q psy8869 421 WYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKK 500 (593)
Q Consensus 421 Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~ 500 (593)
|||++|++|+|+++++.|++++...++.+..+++|+|+.+..++++|+++.+.+|||||||||++++.++.|..+++++|
T Consensus 1 WYvl~~~~~~E~~v~~~L~~~~~~~g~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfPgYvFv~~~~~~~~~~~i~~~~g 80 (172)
T TIGR00922 1 WYVVQTYSGYEKKVKQNLEELIELLGMGDYIFEVIVPTEEVVEIKKGKKKVVERKIFPGYVLVKMDLTDVSWHLVKNTPG 80 (172)
T ss_pred CEEEEeECChHHHHHHHHHHHHHHCCCccceeEEEcceEEEEEEcCCEEEEEEEecCCcEEEEEEEeCccHhHHhhcCCC
Confidence 99999999999999999999888788777788999999999988999999999999999999999988889999999999
Q ss_pred eeEeccCCCCCceecCH-HHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCc
Q psy8869 501 VTGFIGGKSNRPTPISS-KEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGR 579 (593)
Q Consensus 501 v~~~l~~~~~~p~~i~~-~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~ 579 (593)
+.+|+++ ++.|.+||+ +||+.|+..+.++...+.....+++|++|+|++|||+|++|.|.++++++++++|.+++||+
T Consensus 81 v~~~v~~-~~~p~~I~~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g~ 159 (172)
T TIGR00922 81 VTGFVGS-GGKPKALSEDEEVKNILNALEEGKDKPKPKIDFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFGR 159 (172)
T ss_pred ccEEcCc-CCeeeccCCHHHHHHHHHHhhcccccCccccCCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECCC
Confidence 9999987 778999999 99999998776543222344568999999999999999999999999888899999999999
Q ss_pred ceEEeeccCceee
Q psy8869 580 ATPVELEFNQVEK 592 (593)
Q Consensus 580 ~~~v~~~~~~l~~ 592 (593)
.+.|+++.++|++
T Consensus 160 ~~~v~v~~~~l~~ 172 (172)
T TIGR00922 160 ETPVELEFSQVEK 172 (172)
T ss_pred ceEEEEcHHHeeC
Confidence 9999999999975
No 41
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=6e-34 Score=268.05 Aligned_cols=193 Identities=80% Similarity=1.202 Sum_probs=170.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
++++|+++||+|||||||+++|++.....++.....++.+|..++|+++|+|++.....++.+++.++|+|||||.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 56899999999999999999999876554443333445789999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
++..++..+|++++|||+..|...|+++|+.++..+++|++|+++||||+.+.++.++.++.++.++++.++++..++|+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 99999999999999999999999999999999999999988888999999866667777888999999999987678999
Q ss_pred EEeccCccccCC--CCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 171 IKGSAKLALEGD--TGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 171 i~~Sa~~g~~~~--~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
+|+||++|.|.. .+||+ ++..|+++|.+..|+|
T Consensus 161 ipiSa~~g~n~~~~~~w~~--~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVK--KILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCCCcchh--cHhHHHHHHHhCCCCC
Confidence 999999998764 58986 4789999998876543
No 42
>PRK09014 rfaH transcriptional activator RfaH; Provisional
Probab=100.00 E-value=3e-34 Score=262.45 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=144.6
Q ss_pred ceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhcc
Q psy8869 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNT 498 (593)
Q Consensus 419 ~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 498 (593)
.+||+++|+||+|+++.+.| ..+++++|+|+++..++++|+++.+.+|||||||||++++++..|..++++
T Consensus 2 ~~WYvl~t~~~~E~~v~~~L---------~~~gi~~~~P~~~~~~~~~gk~~~v~~plFPgYlFv~~~~~~~~~~~i~~~ 72 (162)
T PRK09014 2 KSWYLLYCKRGQLQRAQEHL---------ERQGVECLYPMITLEKIVRGKRTEVSEPLFPNYLFVEFDPEVIHTTTIRST 72 (162)
T ss_pred ceEEEEEecCchHHHHHHHH---------HHCCCEEECCCEEEEEEECCeEEEEEEEcCCCeEEEEeccccCceEEEEec
Confidence 47999999999999999999 667899999999998889999999999999999999999888888999999
Q ss_pred CCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecC
Q psy8869 499 KKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFG 578 (593)
Q Consensus 499 ~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g 578 (593)
+|+.+|+++ +++|.+||+++|+.|+...... .. ....+.+||+|+|++|||+|++|.|.+++. ++++.|.+++||
T Consensus 73 ~gv~~~v~~-g~~p~~I~~~ei~~l~~~~~~~--~~-~~~~~~~G~~V~I~~Gp~~g~eg~v~~~~~-~~r~~v~v~~~g 147 (162)
T PRK09014 73 RGVSHFVRF-GAQPAIVPSDVIYQLSVYKPEK--IV-DPETPKPGDKVIITEGAFEGLQAIYTEPDG-EARSILLLNLLN 147 (162)
T ss_pred CCcceEecc-CCCccccCHHHHHHHHhhcccc--cc-cccCCCCCCEEEEecCCCCCcEEEEEEeCC-CeEEEEeehhhC
Confidence 999999987 6789999999999999755321 11 223589999999999999999999999984 558999999999
Q ss_pred cceEEeeccCceeeC
Q psy8869 579 RATPVELEFNQVEKI 593 (593)
Q Consensus 579 ~~~~v~~~~~~l~~~ 593 (593)
|.++|+++.++|+++
T Consensus 148 r~~~v~v~~~~~~~~ 162 (162)
T PRK09014 148 KQVKHSVDNTQFRKI 162 (162)
T ss_pred CcEEEEECHHHeecC
Confidence 999999999999875
No 43
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=100.00 E-value=3.5e-33 Score=253.58 Aligned_cols=176 Identities=51% Similarity=0.935 Sum_probs=164.5
Q ss_pred cceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhc
Q psy8869 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKN 497 (593)
Q Consensus 418 ~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~ 497 (593)
.++||+++|++|+|+++++.|+.+....++.+...++.+|.+.....+++++..+.+++|||||||++++.++.|+.+++
T Consensus 2 ~~~Wyvv~~~sg~E~~V~~~l~~~~~~~~~~~~~~~v~vp~E~v~e~~~~~~~~~e~~~fpGYVlVem~~~~~~w~~Vr~ 81 (178)
T COG0250 2 MKRWYVVQTYSGQEKKVKENLERKAELLGMEDLIFEVLVPTEEVVEVKGKRKVIVERKLFPGYVLVEMDMTDEAWHLVRN 81 (178)
T ss_pred CceEEEEEeeccHHHHHHHHHHHHHHhcCCccceeeEEeceEEEEEecCceEEEEecccCCcEEEEEEEcCCceEEEEec
Confidence 46899999999999999999999999999999999999999999988888887899999999999999999999999999
Q ss_pred cCCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEec
Q psy8869 498 TKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF 577 (593)
Q Consensus 498 ~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~ 577 (593)
+|||.+|+++.+.+|.++++++++.++.........+.....|.+||.|+|++|||+|+.|.|.++|..+++++|.+.+|
T Consensus 82 tpgV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~f~g~V~evd~ek~~~~v~v~if 161 (178)
T COG0250 82 TPGVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAGFKAKVEEVDEEKGKLKVEVSIF 161 (178)
T ss_pred CCCcEEEeccCCCCCcccCHHHHHHHHhhccccccCCcccccCCCCCEEEEeccCCCCccEEEEEEcCcCcEEEEEEEEe
Confidence 99999999975589999999999998887776555566677899999999999999999999999999999999999999
Q ss_pred CcceEEeeccCceeeC
Q psy8869 578 GRATPVELEFNQVEKI 593 (593)
Q Consensus 578 g~~~~v~~~~~~l~~~ 593 (593)
||.++|+++.+|++++
T Consensus 162 gr~tPVel~~~qVek~ 177 (178)
T COG0250 162 GRPTPVELEFDQVEKL 177 (178)
T ss_pred CCceEEEEehhhEEEe
Confidence 9999999999999985
No 44
>TIGR01955 RfaH transcriptional activator RfaH. This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.
Probab=100.00 E-value=1.1e-33 Score=258.68 Aligned_cols=159 Identities=22% Similarity=0.447 Sum_probs=143.7
Q ss_pred eEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhccCC
Q psy8869 421 WYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKK 500 (593)
Q Consensus 421 Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~ 500 (593)
|||++|++|+|+++++.| ..+++++|+|++++.++++|+++.+.+|||||||||++++..+.|..+++++|
T Consensus 1 WYvl~~~~~~E~~v~~~L---------~~~gi~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~g 71 (159)
T TIGR01955 1 WYLLYCKPRQEQRAQEHL---------ERQAVECYLPMITVEKIVRGKRQAVSEPLFPNYLFIEFDPEVDSWTTIRSTRG 71 (159)
T ss_pred CEEEEEcCchHHHHHHHH---------HHCCCEEEccCEEEEEEECCcEEEEEEecCCCeEEEEEccCCCceEEEecCCC
Confidence 999999999999999999 66789999999999888999999999999999999999988888999999999
Q ss_pred eeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcc
Q psy8869 501 VTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRA 580 (593)
Q Consensus 501 v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~ 580 (593)
+.+|+++ +++|.+||+++|+.|+....++. .......|.+||+|+|++|||+|++|.|.++++ ++|+.|.+++|||.
T Consensus 72 v~~~v~~-~~~p~~I~~~~i~~l~~~~~~~~-~~~~~~~~~~G~~V~V~~GPf~g~~g~v~~~~~-~~r~~v~l~~~gr~ 148 (159)
T TIGR01955 72 VSRFVRF-GGHPAPVPDDLIHQLRQYEPKDS-VPPATTLPYKGDKVRITDGAFAGFEAIFLEPDG-EKRSMLLLNMIGKQ 148 (159)
T ss_pred cCEEECC-CCCcccCCHHHHHHHHhcccccc-CCccccCCCCCCEEEEeccCCCCcEEEEEEECC-CceEEEEEhhhCCc
Confidence 9999987 77899999999999987654432 223345689999999999999999999999984 55999999999999
Q ss_pred eEEeeccCcee
Q psy8869 581 TPVELEFNQVE 591 (593)
Q Consensus 581 ~~v~~~~~~l~ 591 (593)
+.|+++.++||
T Consensus 149 ~~v~~~~~~~~ 159 (159)
T TIGR01955 149 IKVSVPNTSVE 159 (159)
T ss_pred eEEEecHHHcC
Confidence 99999999885
No 45
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.7e-31 Score=296.60 Aligned_cols=283 Identities=27% Similarity=0.371 Sum_probs=214.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee----CCeEEEEEecC
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET----KARHYAHVDCP 83 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~~~iiDtp 83 (593)
......||+++||+|||||||+++|+..............+++|..+.|++||+|++.+...+.+ .+..++|+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 44567899999999999999999998654332211111234689999999999999987655443 47789999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH---------HHHHHHHHHHH
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD---------EELLELVEIEI 154 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~---------~~~~~~~~~~~ 154 (593)
||.+|...+..+++.+|++|+|||+.+|+..||+.++..+...++|. ||++||||+... ++.+..+..++
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~ 174 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDRLIKELKLTPQEMQQRLLKIIKDV 174 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchhhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 557899998631 23344444455
Q ss_pred HHHHhhcC---------CCCCCceEEEeccCccccCCCC--------------------------CCCcCcHHHHHHHhh
Q psy8869 155 RELLNKYE---------FPGNDIPIIKGSAKLALEGDTG--------------------------PLGEQSILSLSKALD 199 (593)
Q Consensus 155 ~~~l~~~~---------~~~~~~~vi~~Sa~~g~~~~~~--------------------------w~~~~~~~~ll~~l~ 199 (593)
..++..+. +...+-.+++.|++.++.-..+ |. +-+..|++.+.
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~--Pv~~~Lld~I~ 252 (731)
T PRK07560 175 NKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKA--PLHEVVLDMVV 252 (731)
T ss_pred HHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhc--cchhHHHHHHH
Confidence 55555432 1122345778899876432100 00 01126899999
Q ss_pred hhCCCCCC-------------------------CCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCce
Q psy8869 200 TYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 254 (593)
Q Consensus 200 ~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~ 254 (593)
.++|.|.. +.+.|+.+.|.+++..++.|.++++||.+|+|++||.|++.+.+ .
T Consensus 253 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~--~ 330 (731)
T PRK07560 253 KHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK--K 330 (731)
T ss_pred HhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC--C
Confidence 99998842 23568999999999999999999999999999999999987543 4
Q ss_pred EEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 255 KTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 255 ~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
+.+|..|... ..++++|.|||++++. |+ .++.+|++|++++
T Consensus 331 ~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 331 KNRVQQVGIYMGPEREEVEEIPAGNIAAVT--GL--KDARAGETVVSVE 375 (731)
T ss_pred ceEeheehhhhcCCCceeeeECCCCEEEEE--cc--cccccCCEEeCCC
Confidence 4677777654 4689999999999983 44 3567899998764
No 46
>PRK00007 elongation factor G; Reviewed
Probab=99.98 E-value=2.7e-30 Score=288.05 Aligned_cols=272 Identities=25% Similarity=0.317 Sum_probs=211.1
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
.....||+++||+|||||||+++|+........ ......+.+|..+.|+++|+|++.....+++.++.++|+|||||.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 446789999999999999999999865432211 011124579999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc-----
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY----- 161 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~----- 161 (593)
+|..++..++..+|++|+||||.+|+..||++++..+..+++|.+ |++||||+.+.+ +..+..++++.+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD--FYRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC--HHHHHHHHHHHhCCCeeeEE
Confidence 999999999999999999999999999999999999999999975 568999998542 111222222222110
Q ss_pred --------------------------------------------------------------------------------
Q psy8869 162 -------------------------------------------------------------------------------- 161 (593)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (593)
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence
Q ss_pred -----CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC--------------------CCCCCeeEE
Q psy8869 162 -----EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLP 216 (593)
Q Consensus 162 -----~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~--------------------~~~~~~~~~ 216 (593)
.....-+|++..||+++ .|+..|++.|..++|.|.. +.+.|+.+.
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 313 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSAL 313 (693)
T ss_pred HHHHHHhcCcEEEEEecccccC----------cCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEE
Confidence 00012345566666654 5789999999999998742 235689999
Q ss_pred EEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccc
Q psy8869 217 VEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERG 292 (593)
Q Consensus 217 i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G 292 (593)
|.++...+..|.+.++||.+|+|+.||.|+... .....++..|... ..++++|.|||++++ .|++ +++.|
T Consensus 314 VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~--~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~G 387 (693)
T PRK00007 314 AFKIMTDPFVGKLTFFRVYSGVLESGSYVLNST--KGKKERIGRILQMHANKREEIKEVRAGDIAAA--VGLK--DTTTG 387 (693)
T ss_pred EEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCC--CCceeEeceeEEeccCCcccccccCCCcEEEE--eCCc--cCCcC
Confidence 999998889999999999999999999997542 2234566676654 468999999999998 4443 46899
Q ss_pred eEEecCC
Q psy8869 293 QVLAKPG 299 (593)
Q Consensus 293 ~vl~~~~ 299 (593)
++|++++
T Consensus 388 dtL~~~~ 394 (693)
T PRK00007 388 DTLCDEK 394 (693)
T ss_pred CEeeCCC
Confidence 9998654
No 47
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=99.98 E-value=4.3e-31 Score=247.87 Aligned_cols=173 Identities=28% Similarity=0.598 Sum_probs=149.1
Q ss_pred eeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEE-----Eec--------------------Cc---eEE
Q psy8869 420 RWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVD-----VKK--------------------NQ---KSV 471 (593)
Q Consensus 420 ~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~-----~~~--------------------g~---~~~ 471 (593)
+||+++|++|.|.+|.+.|++++...++++..+++.+|+++... .++ |+ ++.
T Consensus 1 kWYvv~t~sG~E~kV~~~l~~kv~~~~~ed~i~~v~Vp~e~~ve~~v~e~k~~~~p~~~k~~~~~~w~~~~~gk~~k~k~ 80 (258)
T TIGR01956 1 QWYIATTINGNEDEVIENIKAKVRALGLENYISDFKILKEREIEEKVFEPKNGQAPRSMKNTATTKWETLDETKYKKTKI 80 (258)
T ss_pred CeEEEEeeCCcHHHHHHHHHHHHHhCCCccEEEEEEEeeeEEEEEEEEEeecCcccccccccccccceeccCCccccEEE
Confidence 49999999999999999999999999999999999999987544 344 55 788
Q ss_pred EEecccCcEEEEEEeeChhhhhhhhccCCeeEeccCC--CCCceecCHHHH-HHHHHHHhcCCC----------------
Q psy8869 472 IKKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIGGK--SNRPTPISSKEI-EEILKQIKKGVE---------------- 532 (593)
Q Consensus 472 ~~~plfpgYvFv~~~~~~~~~~~i~~~~~v~~~l~~~--~~~p~~i~~~~~-~~l~~~~~~~~~---------------- 532 (593)
+.+++|||||||++.+.++.|+.+++++||.||+|.. +.+|.||++++. +.|...+.....
T Consensus 81 ~er~~fPGYI~IkM~m~d~~W~~VRnt~gVTGFvGssg~g~kPiPls~~e~~~~ml~~~~~~~~~~~~~~~~~~~~~~~~ 160 (258)
T TIGR01956 81 SEKNKYNGYIYIKMIMTEDAWFLIRNTENVTGLVGSSGKGAKPIPISADADKLKMLKGISENTKKRVLVTNTAIVEMEEN 160 (258)
T ss_pred EEeeecCcEEEEEEEecccHhhheecCCCCCeecCCCCCCCCCcCCCHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 9999999999999999999999999999999999952 347999999998 566554443111
Q ss_pred ------------------------------------CCC--CceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEE
Q psy8869 533 ------------------------------------KPR--PKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSV 574 (593)
Q Consensus 533 ------------------------------------~~~--~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v 574 (593)
... ....|.+||.|+|++|||+|++|.|.+++.+++++.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~VrI~dGPF~GfeG~I~eid~~k~Rv~VlV 240 (258)
T TIGR01956 161 KFDEKCQYILKHKQVKPEAIAQVSESGEIIDEIVEEFQLVDNLSKFRVGNFVKIVDGPFKGIVGKIKKIDQEKKKAIVEV 240 (258)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEEEEecCCCCcEEEEEEEeCCCCEEEEEE
Confidence 001 234588999999999999999999999998788999999
Q ss_pred EecCcceEEeeccCceee
Q psy8869 575 TIFGRATPVELEFNQVEK 592 (593)
Q Consensus 575 ~~~g~~~~v~~~~~~l~~ 592 (593)
++|||.++|+++.++|+.
T Consensus 241 ~IfGR~TpVeL~~~qVe~ 258 (258)
T TIGR01956 241 EILGKSVDVDLNFKHLKL 258 (258)
T ss_pred EecCCcEEEEEchHHEEC
Confidence 999999999999999873
No 48
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=4.2e-30 Score=277.91 Aligned_cols=248 Identities=27% Similarity=0.308 Sum_probs=194.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe-EEEEEecCChhhhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHADYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpGh~~~~ 89 (593)
...+|+++||+|||||||+++|.+.... ....+|+|.+.....+++++. .++|||||||++|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~----------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA----------------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc----------------cccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 4468999999999999999999753111 111357888887777777544 89999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHH---HhhcCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL---LNKYEFPGN 166 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~~~ 166 (593)
..+.+++..+|+++||+|+++|...||.+++..+...++| +||++||+|+.+.. .+.+...+.+. ...++ .
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~---~ 223 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWG---G 223 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHHHHhhhhHHhcC---C
Confidence 9999999999999999999999999999999999999999 66678999996531 11222222211 11111 2
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh--CCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCE
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY--IPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~--l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~ 244 (593)
..+++++||++| .++++|+++|... +.....+.+.|+++.|.+++..++.|++++|+|.+|+|++||.
T Consensus 224 ~~~~v~iSAktG----------eGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 224 DTIFVPVSALTG----------DGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred CceEEEEECCCC----------CChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 478999999998 6888999887542 2333345678999999999999999999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEe-cceecceeeecceEEEEeccCCccCCccceEEec
Q psy8869 245 LEIIGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAK 297 (593)
Q Consensus 245 v~i~p~~~~~~~~v~si~~-~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 297 (593)
+.++|. ..+|++++. ++..+++|.||+.|.+. |++.. -..|+.+..
T Consensus 294 iv~~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~~-p~aGd~~~~ 340 (587)
T TIGR00487 294 VVVGAA----YGRVRAMIDENGKSVKEAGPSKPVEIL--GLSDV-PAAGDEFIV 340 (587)
T ss_pred EEECCC----ccEEEEEECCCCCCCCEECCCCEEEEe--CCCCC-CCCCCEEEE
Confidence 998863 368999998 56789999999999874 54421 257888873
No 49
>PRK12739 elongation factor G; Reviewed
Probab=99.97 E-value=3.5e-30 Score=287.39 Aligned_cols=272 Identities=26% Similarity=0.329 Sum_probs=212.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
....+||+++||+|||||||+++|+........ ......+.+|..+.|+++|+|++.....++++++.++|+|||||.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 346789999999999999999999865432211 011124579999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc-----
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY----- 161 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~----- 161 (593)
+|..++..++..+|++|+|||+.+|...||++++..+...++|.+ +++||||+...+ ++.+..++++.+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ 161 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD--FFRSVEQIKDRLGANAVPIQ 161 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC--HHHHHHHHHHHhCCCceeEE
Confidence 999999999999999999999999999999999999999999975 568999998542 111222222222110
Q ss_pred --------------------------------------------------------------------------------
Q psy8869 162 -------------------------------------------------------------------------------- 161 (593)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (593)
T Consensus 162 iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~ 241 (691)
T PRK12739 162 LPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKA 241 (691)
T ss_pred ecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHH
Confidence
Q ss_pred -----CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC-------------------CCCCCeeEEE
Q psy8869 162 -----EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-------------------AIDGAFLLPV 217 (593)
Q Consensus 162 -----~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~-------------------~~~~~~~~~i 217 (593)
.....-+|++..||.++ .|+..|++.|..++|.|.. +.+.|+.+.|
T Consensus 242 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~V 311 (691)
T PRK12739 242 AIRKATINMEFFPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALA 311 (691)
T ss_pred HHHHHHHcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEE
Confidence 00012246667777765 5789999999999997742 2467899999
Q ss_pred EEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccce
Q psy8869 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (593)
Q Consensus 218 ~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~ 293 (593)
.+++..++.|.+.++||.+|+|+.||.|+... .+...++..|... ..++++|.|||++++. |++ .++.|+
T Consensus 312 fK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~gd 385 (691)
T PRK12739 312 FKIMTDPFVGRLTFFRVYSGVLESGSYVLNTT--KGKKERIGRLLQMHANKREEIKEVYAGDIAAAV--GLK--DTTTGD 385 (691)
T ss_pred EEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCC--CCceEEecceEEEecCCcccccccCCCCEEEEe--CCC--cccCCC
Confidence 99999899999999999999999999997543 2234566666543 4689999999999985 444 468999
Q ss_pred EEecCC
Q psy8869 294 VLAKPG 299 (593)
Q Consensus 294 vl~~~~ 299 (593)
+|++.+
T Consensus 386 tl~~~~ 391 (691)
T PRK12739 386 TLCDEK 391 (691)
T ss_pred EEeCCC
Confidence 998664
No 50
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=3.9e-30 Score=283.93 Aligned_cols=249 Identities=29% Similarity=0.321 Sum_probs=198.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
....+|+++||+|||||||+++|...... ....+|+|+++..+.++++++.++|||||||++|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~----------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA----------------AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc----------------ccccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 45578999999999999999999743111 11245889888888888888999999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHH---HHhhcCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRE---LLNKYEFPGN 166 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~---~l~~~~~~~~ 166 (593)
..+.+++..+|++|||+|+++|...||.+|+..+...++| +||++||||+.+.+ .+.+..++.+ +...++ .
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g---~ 425 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWG---G 425 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHhC---C
Confidence 9999999999999999999999999999999999999999 66678999997532 1122222222 112221 3
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC--CCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCE
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~ 244 (593)
.+|++++||++| .++++|+++|.... .....+.+.|+...|.+++..++.|++++++|.+|+|+.||.
T Consensus 426 ~vp~vpvSAktG----------~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~ 495 (787)
T PRK05306 426 DTIFVPVSAKTG----------EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDI 495 (787)
T ss_pred CceEEEEeCCCC----------CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCE
Confidence 589999999998 67888888876421 123445678899999999999999999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEec-ceecceeeecceEEEEeccCCccCC-ccceEEecC
Q psy8869 245 LEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDV-ERGQVLAKP 298 (593)
Q Consensus 245 v~i~p~~~~~~~~v~si~~~-~~~~~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~~ 298 (593)
|.+++ ...+|++++.. +.++++|.||+.|.+. |++ ++ ..||+|+..
T Consensus 496 vv~g~----~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~Gd~l~~~ 543 (787)
T PRK05306 496 VVAGT----TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAGDEFVVV 543 (787)
T ss_pred EEECC----cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCCCEEEEc
Confidence 98864 35789999874 6789999999999884 433 33 689999843
No 51
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=7.2e-31 Score=247.68 Aligned_cols=182 Identities=42% Similarity=0.604 Sum_probs=152.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCcc--ccccccCCChhhhhcCceEEeeeeEEe--eCCeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEA--KSYDQIDAAPEEKARGITINTAHIEYE--TKARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpGh 85 (593)
|+.++|+++||+|||||||+++|+........... .....+|.+++|+++|+|++.....++ ...+.++|+|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 57899999999999999999999977543222111 112347899999999999999999998 99999999999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH-HHHhhcCCC
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR-ELLNKYEFP 164 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~-~~l~~~~~~ 164 (593)
.+|.+++..++..+|++|+|||+.+|...|+.+|+..+..+++| +||++||||+. +..++....++. .+++..++.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTST
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999 66678999999 334444555555 677888776
Q ss_pred C-CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 165 G-NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 165 ~-~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+ ..+|++++||++| .++++|+++|.+++|.
T Consensus 158 ~~~~~~vi~~Sa~~g----------~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 158 GEEIVPVIPISALTG----------DGIDELLEALVELLPS 188 (188)
T ss_dssp TTSTEEEEEEBTTTT----------BTHHHHHHHHHHHS--
T ss_pred ccccceEEEEecCCC----------CCHHHHHHHHHHhCcC
Confidence 5 4789999999998 6899999999998873
No 52
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.97 E-value=3e-29 Score=268.73 Aligned_cols=273 Identities=24% Similarity=0.309 Sum_probs=209.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhh---cCC---ccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK---FGG---EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---~~~---~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
....||+++||+|||||||+++|+...... +.. .......+|..+.|+++|+|+......+++++..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 467899999999999999999998543221 110 01112247888999999999999999999999999999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHHH-----
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRE----- 156 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~----- 156 (593)
||.+|...+..++..+|++|+|+|+.+|...|++..+..+...++|.+ +++||+|+... .+..+.++..+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 999999999999999999999999999999999999999999999955 56899998753 2222222221110
Q ss_pred --------------------------------------------HHh-------------hc--------------CCCC
Q psy8869 157 --------------------------------------------LLN-------------KY--------------EFPG 165 (593)
Q Consensus 157 --------------------------------------------~l~-------------~~--------------~~~~ 165 (593)
++. .+ -..+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 000 00 0011
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCC---------CCCCeeEEEEEEE---EeCCCcEEEEEE
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVF---SISGRGTVVTGR 233 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~---~~~~~G~v~~G~ 233 (593)
.-+|+++.||+++ .|+..||+.+..++|.|... .+.+|...|+++. ..+++|.+.+.|
T Consensus 247 ~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 247 ELTPVFFGSALNN----------FGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred CeEEEEEeecccC----------cCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 2478999999997 68999999999999988531 2456888888886 345889999999
Q ss_pred EEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 234 VERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 234 v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
|.||+++.|+.|+.... +.+.++..+... +.++++|.|||++++. +..+++.||+|++.+
T Consensus 317 V~sG~l~~g~~v~~~~~--~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRT--GKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred EeccEECCCCEEEeccC--CceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 99999999999987643 345566665443 4689999999999884 345788999998754
No 53
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.97 E-value=3.1e-29 Score=280.01 Aligned_cols=272 Identities=26% Similarity=0.329 Sum_probs=209.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
.....||+++||+|||||||+++|+........ ......+.+|..+.|+++|+|++.....+++++..++|||||||.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 446789999999999999999999865432211 111123578999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC----
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE---- 162 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~---- 162 (593)
+|...+..++..+|++++|+|+.+|...|+.+++..+...++|.++ ++||+|+..++ ++.+..++.+.+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ 163 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIA-FVNKMDKTGAN--FLRVVNQIKQRLGANAVPIQ 163 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEE-EEECCCCCCCC--HHHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999765 68999998532 1111222222211100
Q ss_pred --------------------------------------------------------------------------------
Q psy8869 163 -------------------------------------------------------------------------------- 162 (593)
Q Consensus 163 -------------------------------------------------------------------------------- 162 (593)
T Consensus 164 ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 164 LPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred eccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence
Q ss_pred -----CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC-------------------CCCCCeeEEEE
Q psy8869 163 -----FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-------------------AIDGAFLLPVE 218 (593)
Q Consensus 163 -----~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~-------------------~~~~~~~~~i~ 218 (593)
.....+|++..||+++ .|+..|++.|..++|.|.. +.+.|+.+.|.
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf 313 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKN----------KGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAF 313 (689)
T ss_pred HHHHHhcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEE
Confidence 0112356666666665 5789999999999998742 22568999999
Q ss_pred EEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceE
Q psy8869 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (593)
Q Consensus 219 ~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~v 294 (593)
++...++.|.+..+||.||+|+.||.|+... .....++..|... ..++++|.|||++++ .|++ .+..|++
T Consensus 314 K~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~--~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdt 387 (689)
T TIGR00484 314 KVATDPFVGQLTFVRVYSGVLKSGSYVKNSR--KNKKERVGRLVKMHANNREEIKEVRAGDICAA--IGLK--DTTTGDT 387 (689)
T ss_pred EeeecCCCCeEEEEEEEEeEEcCCCEEEeCC--CCceEEecceEEeecCCcccccccCCCCEEEE--cCCC--CCCCCCE
Confidence 9999999999999999999999999998642 2233456555543 368899999999998 4443 5678999
Q ss_pred EecCC
Q psy8869 295 LAKPG 299 (593)
Q Consensus 295 l~~~~ 299 (593)
|+++.
T Consensus 388 l~~~~ 392 (689)
T TIGR00484 388 LCDPK 392 (689)
T ss_pred EeCCC
Confidence 98664
No 54
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.97 E-value=6.5e-29 Score=266.15 Aligned_cols=274 Identities=24% Similarity=0.300 Sum_probs=209.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhh---cC---CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEec
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKK---FG---GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDC 82 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---~~---~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDt 82 (593)
.....||+++||+|||||||+++|+...... +. ........+|..+.|+++|+|+..+...+++.+..++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 3567899999999999999999997543221 11 11111245799999999999999999999999999999999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC--HHHHHHHHHHHHHH----
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD--DEELLELVEIEIRE---- 156 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~--~~~~~~~~~~~~~~---- 156 (593)
|||.+|...+..++..+|++|+|+|+..|...++..++..+...++|.+ +++||+|+.. .++..+.++..+..
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pii-vviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIF-TFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999988899954 5689999863 32333322221110
Q ss_pred ----------------------------------------------------------------HHhhc--------CCC
Q psy8869 157 ----------------------------------------------------------------LLNKY--------EFP 164 (593)
Q Consensus 157 ----------------------------------------------------------------~l~~~--------~~~ 164 (593)
++... -..
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 246 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHG 246 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhc
Confidence 00000 001
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCC---------CCCCeeEEEEEEEE--e-CCCcEEEEE
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS--I-SGRGTVVTG 232 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~~--~-~~~G~v~~G 232 (593)
+.-+|+++.||+++ .|+..||+.+..++|+|... .+.+|...|+++.. . +++|.+.+.
T Consensus 247 ~~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~ 316 (527)
T TIGR00503 247 GEMTPVFFGTALGN----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFM 316 (527)
T ss_pred CCeeEEEEeecccC----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEE
Confidence 23467888888887 68999999999999988532 24678888888865 4 589999999
Q ss_pred EEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 233 RVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 233 ~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
||.||+++.|++|+.... +.+.++..++.. +.++++|.|||++++. +...++.||+|++.+
T Consensus 317 RV~sG~l~~g~~v~~~~~--~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 317 RVVSGKYEKGMKLKHVRT--GKDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EEeeeEEcCCCEEEecCC--CCcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 999999999999986543 345666666543 4789999999999884 345788999998743
No 55
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.1e-29 Score=270.17 Aligned_cols=272 Identities=28% Similarity=0.378 Sum_probs=213.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh 85 (593)
.....||+|+||+|||||||+.+|+.......+ ........||..+.|++||+|+..+...+.+.+ +.++|||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 567899999999999999999999866543332 111123479999999999999999999999995 99999999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh-----
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK----- 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~----- 160 (593)
-+|...+.++++.+|++++|+||.+|++.||...+..+...++|++++ +||||+...+- .....++.+.+..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~f-iNKmDR~~a~~--~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILF-VNKMDRLGADF--YLVVEQLKERLGANPVPV 163 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEE-EECccccccCh--hhhHHHHHHHhCCCceee
Confidence 999999999999999999999999999999999999999999998774 79999875310 0111111111111
Q ss_pred ----------------------------------------------------------------cC--------------
Q psy8869 161 ----------------------------------------------------------------YE-------------- 162 (593)
Q Consensus 161 ----------------------------------------------------------------~~-------------- 162 (593)
+-
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 00
Q ss_pred ----CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC--------------------CCCCCeeEEEE
Q psy8869 163 ----FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPVE 218 (593)
Q Consensus 163 ----~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~--------------------~~~~~~~~~i~ 218 (593)
......|+++.||.++ .++..|++++..++|.|.. +.++|+.+.+.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf 313 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF 313 (697)
T ss_pred HHhhhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEE
Confidence 0011345555555554 6789999999999998722 23689999999
Q ss_pred EEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceE
Q psy8869 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (593)
Q Consensus 219 ~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~v 294 (593)
++...+..|.+.++||.||+|+.||.++... .+.+.+|..|... +.+++++.||+++++ .|++ +...|++
T Consensus 314 Ki~~d~~~g~l~~~RvysGtl~~G~~v~n~~--~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~--~Gl~--~~~tGdT 387 (697)
T COG0480 314 KIMTDPFVGKLTFVRVYSGTLKSGSEVLNST--KGKKERVGRLLLMHGNEREEVDEVPAGDIVAL--VGLK--DATTGDT 387 (697)
T ss_pred EeEecCCCCeEEEEEEeccEEcCCCEEEeCC--CCccEEEEEEEEccCCceeecccccCccEEEE--Eccc--ccccCCe
Confidence 9999999999999999999999999887653 3456777777654 368999999999988 4444 4478999
Q ss_pred EecCC
Q psy8869 295 LAKPG 299 (593)
Q Consensus 295 l~~~~ 299 (593)
||+.+
T Consensus 388 l~~~~ 392 (697)
T COG0480 388 LCDEN 392 (697)
T ss_pred eecCC
Confidence 99776
No 56
>PRK13351 elongation factor G; Reviewed
Probab=99.97 E-value=3.2e-28 Score=272.77 Aligned_cols=274 Identities=29% Similarity=0.380 Sum_probs=212.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCC--ccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG--EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
.....||+++||+|||||||+++|+......... .......+|..+.|+++|+|+......+++.+..++|||||||.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3467899999999999999999998654321110 01123468899999999999999989999999999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHH----------
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEI---------- 154 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~---------- 154 (593)
+|...+..++..+|++++|+|++++...++.+++..+...++|.++ ++||+|+... ....+.++..+
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ii-viNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLI-FINKMDRVGADLFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEE-EEECCCCCCCCHHHHHHHHHHHHCCCeEEEEec
Confidence 9999999999999999999999999999999999999999999665 6799998753 12222221110
Q ss_pred --------------------------------------------------------------HHHHhhcCC---------
Q psy8869 155 --------------------------------------------------------------RELLNKYEF--------- 163 (593)
Q Consensus 155 --------------------------------------------------------------~~~l~~~~~--------- 163 (593)
+.+++...+
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 001100000
Q ss_pred -----CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC------------------CCCCCeeEEEEEE
Q psy8869 164 -----PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------------------AIDGAFLLPVEDV 220 (593)
Q Consensus 164 -----~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~------------------~~~~~~~~~i~~~ 220 (593)
...-+|++..||++| .|+..|+++|..++|.|.. +.+.|+.+.|+++
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKN----------IGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred HHHHHhCCEEEEEecccCcC----------ccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 012578899999997 6899999999999998852 3467899999999
Q ss_pred EEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEe
Q psy8869 221 FSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 221 ~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
+..++.|.++++||.+|+|+.||.|++.+.+ ...++..|... ..++++|.|||++++ .|++ ++..|++|+
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i--~gl~--~~~~gdtl~ 387 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG--KREKVGRLFRLQGNKREEVDRAKAGDIVAV--AGLK--ELETGDTLH 387 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCC--CceEeeeEEEEccCCeeECCccCCCCEEEE--ECcc--cCccCCEEe
Confidence 9999999999999999999999999987543 33455555443 478999999999977 4543 456799998
Q ss_pred cCC
Q psy8869 297 KPG 299 (593)
Q Consensus 297 ~~~ 299 (593)
+.+
T Consensus 388 ~~~ 390 (687)
T PRK13351 388 DSA 390 (687)
T ss_pred CCC
Confidence 654
No 57
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=2e-28 Score=267.89 Aligned_cols=250 Identities=25% Similarity=0.289 Sum_probs=191.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee----CCeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET----KARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~~~iiDtpGh 85 (593)
.+..+|+++||+|||||||+++|...... ....+|+|.++..+.+.+ .+..++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~----------------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA----------------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc----------------cccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 35579999999999999999999753211 122357777665544433 3578999999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHH---HhhcC
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL---LNKYE 162 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~---l~~~~ 162 (593)
+.|..++..++..+|++|||+|+.+|...||.+++..+...++| +||++||+|+.+.. .+.+..++..+ ...++
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC
Confidence 99999999999999999999999999999999999999999999 55678999997642 12232233221 11122
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC--CCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEe
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVR 240 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~ 240 (593)
..+|++++||++| .++.+|+++|..... ....+.+.|+...|.++...++.|++++|+|.+|+|+
T Consensus 383 ---~~vpvv~VSAktG----------~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr 449 (742)
T CHL00189 383 ---GDTPMIPISASQG----------TNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLH 449 (742)
T ss_pred ---CCceEEEEECCCC----------CCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 2579999999998 689999998876432 2233455788888888888899999999999999999
Q ss_pred cCCEEEEeecCCceEEEEEEEEe-cceecceeeecceEEEEeccCCccCCccceEEecC
Q psy8869 241 VGEELEIIGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 298 (593)
Q Consensus 241 ~gd~v~i~p~~~~~~~~v~si~~-~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 298 (593)
.||.|.++| ...+|+++.. .+.++.+|.||+.|.+ .|++ .....|+.+.--
T Consensus 450 ~GD~vv~g~----~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd~l~v~ 501 (742)
T CHL00189 450 IGDIIVIGT----SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGEHFQVF 501 (742)
T ss_pred cCCEEEECC----cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCCEEEEe
Confidence 999998875 2368999874 4678999999999987 4442 345678888643
No 58
>KOG0052|consensus
Probab=99.97 E-value=1.3e-30 Score=257.01 Aligned_cols=326 Identities=30% Similarity=0.447 Sum_probs=261.8
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHH------------HHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIA------------TVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~------------~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 74 (593)
..++++++|.++||+++||||+.+... ......+++.+.+.|.+|.+..|+++|++++.....+++..
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 457899999999999999999877321 12334567888888899999999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecCCCCH---H
Q psy8869 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVDD---E 144 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~---~ 144 (593)
+.++++|.|||.+|.++|+.+.+++|+++++|.+..|.+ +||+||..++..+++.++|+.+||||...+ +
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~ 161 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 161 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccc
Confidence 999999999999999999999999999999999955433 899999999999999999999999997654 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeC
Q psy8869 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSIS 224 (593)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~ 224 (593)
.+++++....+...+..++ +..+. .++++.+.
T Consensus 162 ~r~~ei~k~~~~~~~~~g~--------------------------n~~~~----------------------~~~~~~~~ 193 (391)
T KOG0052|consen 162 ARYEEIKKEVSSYIKKIGY--------------------------NPAAV----------------------LQDVYKIG 193 (391)
T ss_pred cchhhhheeeeeeeecccc--------------------------CChhh----------------------hccceeec
Confidence 2222221111110000000 00011 34666666
Q ss_pred CCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCC--C
Q psy8869 225 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI--K 302 (593)
Q Consensus 225 ~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~--~ 302 (593)
+.| +..|.++.++.+...|.. ....+++.++++..-+.+.+|++++++..++...++++|+++.+.+.. .
T Consensus 194 g~~------~~t~iie~~~~v~~~~~~--~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~ 265 (391)
T KOG0052|consen 194 GIG------VETGISEPGMDVTFAPSG--VTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPV 265 (391)
T ss_pred cee------eeeeeccCccceeccccc--cccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCcc
Confidence 665 788889998888776544 367888888888888899999999999999999999999999988653 3
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEE-------------ecCCcccccCCCEEEEEEEeCcee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIE-------------LPKNKEMVMPGDNVLITVRLINPI 369 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~-------------~~~~~~~l~~gd~~~v~~~~~~p~ 369 (593)
....|+|++.+|.|+ ..|..||.|.+.|+++.+.|++. +...+.+++++|.+.+...+.+|+
T Consensus 266 ~~~g~t~qviilnhp-----gqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~ 340 (391)
T KOG0052|consen 266 EAAGFTAQVIILNHP-----GQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPL 340 (391)
T ss_pred ccccceeeEEEecCc-----cccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCcc
Confidence 457899999999987 46999999999999999999874 234567899999999999999999
Q ss_pred eeecC------CeEEEeeCCeEEEeeeecc
Q psy8869 370 AMEEG------LRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 370 ~~~~~------~r~vlr~~~~~i~~G~v~~ 393 (593)
|++.. +||.+||..+|+|+|.+-.
T Consensus 341 ~ve~~~~~~~l~rfav~d~~~tvavgvika 370 (391)
T KOG0052|consen 341 CVESFSDYVPLGRFAVRDMRQTVAVGVIKA 370 (391)
T ss_pred ccccccccccccchhhhhhhccccccceee
Confidence 99875 6899999999999998733
No 59
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=7.8e-28 Score=261.00 Aligned_cols=227 Identities=29% Similarity=0.315 Sum_probs=167.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee------------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET------------------ 72 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~------------------ 72 (593)
....|+++||+|||||||+++|.+...... ...++|.+.....+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~----------------~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~ 68 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAK----------------EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKL 68 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccC----------------CCCceEEeeceeeccccccccccceecccccccc
Confidence 445799999999999999999975321110 0112332222111110
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC-HH-------
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE------- 144 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~-~~------- 144 (593)
.-..++|||||||++|...+..+++.+|++++|+|+++|...||.+++.++...++| +++++||+|+.+ +.
T Consensus 69 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 69 KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchH
Confidence 011278999999999999999999999999999999999999999999999999999 566789999862 21
Q ss_pred ------------HHHHHHHHHHHHHHhhcCCCC----------CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh--
Q psy8869 145 ------------ELLELVEIEIRELLNKYEFPG----------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT-- 200 (593)
Q Consensus 145 ------------~~~~~~~~~~~~~l~~~~~~~----------~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~-- 200 (593)
..++....++...+...++.. ..++++|+||++| .++++|++.+..
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG----------eGi~dLl~~i~~~~ 217 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG----------EGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC----------CChHHHHHHHHHHH
Confidence 122222333444555555432 3689999999998 688888877643
Q ss_pred --hCCC-CCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec
Q psy8869 201 --YIPT-PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF 264 (593)
Q Consensus 201 --~l~~-~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~ 264 (593)
.++. -..+.+.|++++|.+++..+|.|++++|+|.+|+|++||.+.++|......++|+++..+
T Consensus 218 ~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~ 284 (586)
T PRK04004 218 QRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKP 284 (586)
T ss_pred HHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecC
Confidence 2322 234567899999999999999999999999999999999999987643345799999875
No 60
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.96 E-value=1.1e-28 Score=238.01 Aligned_cols=186 Identities=37% Similarity=0.459 Sum_probs=154.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhh---------------hcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEE
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSK---------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYA 78 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 78 (593)
||+++||+|||||||+++|+..... .+.......+++|....|+++|+|++.....+++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 6899999999999999999865321 1122222335799999999999999999999999999999
Q ss_pred EEecCChhhhHHHHHHhhhcCCEEEEEEECCC-------CCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH---HHHHH
Q psy8869 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAAD-------GPMPQTREHILLARQVGVPYIVVFLNKADMVDD---EELLE 148 (593)
Q Consensus 79 iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~-------g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~---~~~~~ 148 (593)
+||||||.+|...++.++..+|++|+|||+.+ +...|+.+++..+..++++++||++||+|+... +..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 466799999999988898878888999999832 35567
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhC
Q psy8869 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l 202 (593)
.+..+++.+++.+++....+|++++||++|.+.. ++||.+ ..|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g---~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKG---PTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccC---CcHHHHHhCCC
Confidence 7778888888888876567999999999998743 489986 56777777643
No 61
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.96 E-value=2.6e-28 Score=273.00 Aligned_cols=283 Identities=27% Similarity=0.369 Sum_probs=206.6
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeE----EeeCCeEEEEEecC
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE----YETKARHYAHVDCP 83 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~----~~~~~~~~~iiDtp 83 (593)
..+...||+++||+|||||||+++|+................+|..++|+++|+|++..... +++.++.++|||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34567899999999999999999998654322211111224589999999999999876543 56778899999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH---------HHHHHHHHHHH
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD---------EELLELVEIEI 154 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~---------~~~~~~~~~~~ 154 (593)
||.+|...+..++..+|++|+|+|+.+|+..+|.+++..+...++|.+ +++||+|+... .+.+..+...+
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~~~~~~~~~~~~v 173 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRLINELKLTPQELQERFIKIITEV 173 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcccchhcCCHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999888999975 57899998642 12223333333
Q ss_pred HHHHhhcC---------CCCCCceEEEeccCccccCC---------C-----------------CCCCcCcHHHHHHHhh
Q psy8869 155 RELLNKYE---------FPGNDIPIIKGSAKLALEGD---------T-----------------GPLGEQSILSLSKALD 199 (593)
Q Consensus 155 ~~~l~~~~---------~~~~~~~vi~~Sa~~g~~~~---------~-----------------~w~~~~~~~~ll~~l~ 199 (593)
...+.... +.....++...|++.++.-. . .|. +-+..|++.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--Pv~~~Lld~i~ 251 (720)
T TIGR00490 174 NKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKS--PLHQVVLDMVI 251 (720)
T ss_pred HhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhh--hHHHHHHHHHH
Confidence 44432210 00001122333444431100 0 111 11467899999
Q ss_pred hhCCCCCC-------------------------CCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCce
Q psy8869 200 TYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTV 254 (593)
Q Consensus 200 ~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~ 254 (593)
.++|.|.. +.+.|+...|.++...++.|++++|||.+|+|++||.|++.+.+ .
T Consensus 252 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~--~ 329 (720)
T TIGR00490 252 RHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK--A 329 (720)
T ss_pred HhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC--C
Confidence 99988741 12468999999999889999999999999999999999988644 5
Q ss_pred EEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 255 KTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 255 ~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
..+|..|... ..++++|.|||+|++. +++ ++.+||+|++++
T Consensus 330 ~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 330 KARIQQVGVYMGPERVEVDEIPAGNIVAVI--GLK--DAVAGETICTTV 374 (720)
T ss_pred eeEeeEEEEeccCCccCccEECCCCEEEEE--Ccc--ccccCceeecCC
Confidence 5778887765 4589999999999884 443 567899998664
No 62
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.9e-29 Score=244.33 Aligned_cols=273 Identities=23% Similarity=0.318 Sum_probs=208.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH---hhhhcCCc---cccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV---LSKKFGGE---AKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~---~~~~~~~~---~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
....+.+|+-|+|+|||||...|+-. ....|.-. ......-|.-..|++|||++.++...|++.++.++|+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 45678999999999999999998732 11111111 1111123666889999999999999999999999999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHHHHHhhc
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKY 161 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~~l~~~ 161 (593)
||++|...+.+-+..+|.|++||||..|+.+||+..+..|+..++|.+ -+|||+|.... -+..+++++++.--+..+
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 999999999999999999999999999999999999999999999955 46899998753 345555544333110000
Q ss_pred C----------------------------------------------------------------------------CCC
Q psy8869 162 E----------------------------------------------------------------------------FPG 165 (593)
Q Consensus 162 ~----------------------------------------------------------------------------~~~ 165 (593)
. ..+
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcC
Confidence 0 114
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCC---------CC---CCeeEEEEEEEEeCCCcEEEEEE
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------ID---GAFLLPVEDVFSISGRGTVVTGR 233 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~---------~~---~~~~~~i~~~~~~~~~G~v~~G~ 233 (593)
+..|+++.||+.+ -|+..+|+.+..+.|+|... .+ ..|.|-|+-.+.-+++-+++.-|
T Consensus 249 ~~TPVFFGSAl~N----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmR 318 (528)
T COG4108 249 ELTPVFFGSALGN----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMR 318 (528)
T ss_pred CccceEehhhhhc----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEE
Confidence 5678888888876 58999999999988877431 12 34566677677777889999999
Q ss_pred EEeeeEecCCEEEEeecCCceEEEEEEEEe----cceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 234 VERGIVRVGEELEIIGIKDTVKTTCTGVEM----FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 234 v~~G~l~~gd~v~i~p~~~~~~~~v~si~~----~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
|.||.+..|+++....++ ..+++..-+. .++.+++|.|||++++.- .-.++.||+++...
T Consensus 319 v~SGkferGMkv~h~rtG--K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~n----hG~~~IGDT~t~Ge 382 (528)
T COG4108 319 VCSGKFERGMKVTHVRTG--KDVKLSDALTFMAQDRETVEEAYAGDIIGLHN----HGTIQIGDTFTEGE 382 (528)
T ss_pred eccccccCCceeeeeecC--CceEecchHhhhhhhhhhhhhccCCCeEeccC----CCceeecceeecCc
Confidence 999999999999887544 4444544332 367899999999999953 34588999998764
No 63
>PRK12740 elongation factor G; Reviewed
Probab=99.96 E-value=1.1e-27 Score=268.04 Aligned_cols=265 Identities=29% Similarity=0.410 Sum_probs=205.9
Q ss_pred EecCCCChHHHHHHHHHHhhhhcCC--ccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHh
Q psy8869 18 IGHVDHGKTTLTAAIATVLSKKFGG--EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITG 95 (593)
Q Consensus 18 ~G~~~~GKSTLi~~L~~~~~~~~~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~ 95 (593)
+||+|||||||+++|+......... .....+.+|..+.|+++|+|+......+.+.+..++|||||||.+|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999998764432111 01122578999999999999999999999999999999999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHH------------------
Q psy8869 96 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIR------------------ 155 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~------------------ 155 (593)
+..+|++++|+|++.+...++..++..+...++|.++ ++||+|+... .+..+.+...+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~ii-v~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~ 159 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRII-FVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTG 159 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEE-EEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceE
Confidence 9999999999999999999999999999999999665 6799998743 112222211100
Q ss_pred ---------------------------------------------------HHHhhcC--------------CCCCCceE
Q psy8869 156 ---------------------------------------------------ELLNKYE--------------FPGNDIPI 170 (593)
Q Consensus 156 ---------------------------------------------------~~l~~~~--------------~~~~~~~v 170 (593)
.++.... ....-+|+
T Consensus 160 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv 239 (668)
T PRK12740 160 VVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPV 239 (668)
T ss_pred EEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0000000 01124789
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC-----------------CCCCCeeEEEEEEEEeCCCcEEEEEE
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR-----------------AIDGAFLLPVEDVFSISGRGTVVTGR 233 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~-----------------~~~~~~~~~i~~~~~~~~~G~v~~G~ 233 (593)
+.+||++| .|+..|++.|..++|.|.. +.+.|+.+.|++++..++.|.++.++
T Consensus 240 ~~gSA~~~----------~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~R 309 (668)
T PRK12740 240 FCGSALKN----------KGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVR 309 (668)
T ss_pred EeccccCC----------ccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEE
Confidence 99999998 6899999999999998842 34678999999999999999999999
Q ss_pred EEeeeEecCCEEEEeecCCceEEEEEEEEe----cceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 234 VERGIVRVGEELEIIGIKDTVKTTCTGVEM----FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 234 v~~G~l~~gd~v~i~p~~~~~~~~v~si~~----~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
|.+|+|++||.|++.+.+. ..++..|.. ...++++|.|||++++. |++ .++.|++|++.+
T Consensus 310 V~sG~L~~g~~v~~~~~~~--~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 310 VYSGTLKKGDTLYNSGTGK--KERVGRLYRMHGKQREEVDEAVAGDIVAVA--KLK--DAATGDTLCDKG 373 (668)
T ss_pred EeeeEEcCCCEEEeCCCCC--cEEecceeeecCCCccccCccCCCCEEEEe--ccC--ccCCCCEEeCCC
Confidence 9999999999999886432 234444432 35789999999999985 543 588999998654
No 64
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.96 E-value=1.6e-27 Score=257.22 Aligned_cols=226 Identities=28% Similarity=0.346 Sum_probs=165.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee------------------CC
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET------------------KA 74 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~------------------~~ 74 (593)
-.|+++||+|||||||+++|++..... +...|+|.++....+.. ..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~----------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAK----------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccc----------------ccCCceecccCeeEeeecccccccccccccccccccc
Confidence 469999999999999999998642111 11123444332222211 11
Q ss_pred eEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC-HH-----HHHH
Q psy8869 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE-----ELLE 148 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~-~~-----~~~~ 148 (593)
..+.|||||||++|...+..++..+|++++|+|+++|...|+.+++..+...++| +++++||+|+.+ +. ..++
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHH
Confidence 2388999999999999999999999999999999999999999999999999999 556789999974 10 0000
Q ss_pred -------HHHHH-------HHHHHhhcCCC----------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh---
Q psy8869 149 -------LVEIE-------IRELLNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY--- 201 (593)
Q Consensus 149 -------~~~~~-------~~~~l~~~~~~----------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~--- 201 (593)
.+..+ +...+...++. ...+|++|+||++| .|+++|+++|..+
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG----------eGideLl~~l~~l~~~ 217 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG----------EGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC----------CChhHHHHHHHHHHHH
Confidence 11111 11123333332 13689999999998 7888888887532
Q ss_pred -CC-CCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecc
Q psy8869 202 -IP-TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR 265 (593)
Q Consensus 202 -l~-~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~ 265 (593)
++ ....+.+.|++++|.+++.++|.|++++|.|.+|+|++||.+.++|......++|+++...+
T Consensus 218 ~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~ 283 (590)
T TIGR00491 218 YLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR 283 (590)
T ss_pred HhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCC
Confidence 22 12335678999999999999999999999999999999999999986433567899987553
No 65
>KOG0466|consensus
Probab=99.96 E-value=4.6e-29 Score=234.68 Aligned_cols=347 Identities=27% Similarity=0.400 Sum_probs=259.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEE-----e------------
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-----E------------ 71 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~------------ 71 (593)
....+||+.+||+-|||||++.++++.. +-+.+.|.+|.+|+.+.+.+- +
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~-------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVH-------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccce-------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 3567999999999999999999987542 234566778888888765421 0
Q ss_pred --------------------eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCe
Q psy8869 72 --------------------TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPY 130 (593)
Q Consensus 72 --------------------~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~ 130 (593)
.--+++.|+|+|||.-.+.+|+.|+...|+++|+|.+++ .+++||.|||.....+.+++
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 002567899999999999999999999999999999998 68999999999999999999
Q ss_pred EEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCC
Q psy8869 131 IVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAID 210 (593)
Q Consensus 131 iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~ 210 (593)
+++.-||+|+..++...+.. +++..|++.... +..|++|+||--. -+++.+.++|...+|.|.++..
T Consensus 182 iiilQNKiDli~e~~A~eq~-e~I~kFi~~t~a--e~aPiiPisAQlk----------yNId~v~eyivkkIPvPvRdf~ 248 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQH-EQIQKFIQGTVA--EGAPIIPISAQLK----------YNIDVVCEYIVKKIPVPVRDFT 248 (466)
T ss_pred EEEEechhhhhhHHHHHHHH-HHHHHHHhcccc--CCCceeeehhhhc----------cChHHHHHHHHhcCCCCccccC
Confidence 99999999999875544433 367777765543 5789999999776 4789999999999999999999
Q ss_pred CCeeEEEEEEEEeCC--------CcEEEEEEEEeeeEecCCEEEEeecC----CceEEEEEEE-------Eecceeccee
Q psy8869 211 GAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIK----DTVKTTCTGV-------EMFRKLLDQG 271 (593)
Q Consensus 211 ~~~~~~i~~~~~~~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~----~~~~~~v~si-------~~~~~~~~~a 271 (593)
.|.++.|-..|.+.. .|-|+.|.+..|.|++||.+.+.|.- +.-..+++-| ...+...+.|
T Consensus 249 s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~A 328 (466)
T KOG0466|consen 249 SPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFA 328 (466)
T ss_pred CCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceee
Confidence 999999999998753 45689999999999999999998731 1123444433 3335678899
Q ss_pred eecceEEEEeccCC----ccCCccceEEecCCC-CCcccEEEEEEEEeecC---------CCCCCccccCCceeEEEEEe
Q psy8869 272 QAGDNIGLLLRGTK----REDVERGQVLAKPGS-IKPHKHFTGEIYALSKD---------EGGRHTPFFSNYRPQFYFRT 337 (593)
Q Consensus 272 ~aG~~v~l~l~~~~----~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~---------~~~~~~~i~~g~~~~~~~~~ 337 (593)
.||..+++-.+ ++ ..|--.|+||..-+. |..+..++..-++|..- +..+...+.+|...++.+|+
T Consensus 329 vPGGLIGVGT~-~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS 407 (466)
T KOG0466|consen 329 VPGGLIGVGTK-MDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGS 407 (466)
T ss_pred cCCceeeeccc-cCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecc
Confidence 99999998543 22 223345777777665 34456666555544321 11123457778888888887
Q ss_pred eeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEee--C--CeEEEeeee
Q psy8869 338 TDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIRE--G--VQQFIQDNL 391 (593)
Q Consensus 338 ~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~--~--~~~i~~G~v 391 (593)
...-+++...+ +| .+.+.+..|+|.+.|.++.+.. + =+.||-|.|
T Consensus 408 ~sTG~~v~~vk-------~d--~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I 456 (466)
T KOG0466|consen 408 TSTGGRVSAVK-------AD--MAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQI 456 (466)
T ss_pred cccCceEEEEe-------cc--eeeeEecCchhcccchhhhhhhhhhhheEEecceeE
Confidence 66666664332 34 4688899999999998887732 1 256666655
No 66
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-27 Score=244.73 Aligned_cols=249 Identities=28% Similarity=0.312 Sum_probs=189.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---CeEEEEEecCChhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGHAD 87 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpGh~~ 87 (593)
...-|+++||+|||||||+..+-+.....+. ..|+|..+..+.++.+ ...++|+|||||+-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E----------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA 67 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE----------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA 67 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc----------------CCceeeEeeeEEEEeccCCCceEEEEcCCcHHH
Confidence 3457899999999999999998754322111 2389999998888874 46899999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC---
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP--- 164 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~--- 164 (593)
|..+..+|++.+|.++||||+++|..+||.|-+..+++.++| |||++||||+.+.+- +.+..++.+ .++.
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np--~~v~~el~~----~gl~~E~ 140 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEANP--DKVKQELQE----YGLVPEE 140 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCCH--HHHHHHHHH----cCCCHhh
Confidence 999999999999999999999999999999999999999999 677899999986421 122223322 2432
Q ss_pred -CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC--CCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEec
Q psy8869 165 -GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (593)
Q Consensus 165 -~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~ 241 (593)
+..+.++|+||++| .|+++|++.+.-.. -.-..+.+.+.+-.|-++-..+|.|.+++--|..|+|++
T Consensus 141 ~gg~v~~VpvSA~tg----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~ 210 (509)
T COG0532 141 WGGDVIFVPVSAKTG----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKK 210 (509)
T ss_pred cCCceEEEEeeccCC----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEec
Confidence 23689999999998 78999998875321 123345677888899999999999999999999999999
Q ss_pred CCEEEEeecCCceEEEEEEEEe-cceecceeeecceEEEEeccCCccCCccceEEecC
Q psy8869 242 GEELEIIGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 298 (593)
Q Consensus 242 gd~v~i~p~~~~~~~~v~si~~-~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 298 (593)
||.+.++... .+|+.... ...++..+.++..+.+ .+++.....-|..++-+
T Consensus 211 GD~iv~g~~~----g~I~t~v~~~~~~i~~a~ps~~v~i--~g~~evp~Ag~~~~v~~ 262 (509)
T COG0532 211 GDIIVAGGEY----GRVRTMVDDLGKPIKEAGPSKPVEI--LGLSEVPAAGDVFIVVK 262 (509)
T ss_pred CCEEEEccCC----CceEEeehhcCCCccccCCCCCeEE--eccccccccCceEEecC
Confidence 9999987532 45555433 3567778877755544 55555444445444433
No 67
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.96 E-value=8.1e-28 Score=230.30 Aligned_cols=182 Identities=32% Similarity=0.388 Sum_probs=150.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhh---------------cCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEE
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKK---------------FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYA 78 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 78 (593)
||+++||+|||||||+++|+...... ++......+.+|..+.|+++|+|++.....+++++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998653221 112223345799999999999999999999999999999
Q ss_pred EEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHHHHHHHHH
Q psy8869 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIREL 157 (593)
Q Consensus 79 iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~~~~~~~~ 157 (593)
|+|||||.+|...+..++..+|++|+|+|++++...++.+++.++...++|.+|+++||+|+.++ ++.++.+..+++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998988898888878999999864 34556677788888
Q ss_pred HhhcCCCCCCceEEEeccCccccC-----CCCCCCcCcHHHHHHHhhh
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEG-----DTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~-----~~~w~~~~~~~~ll~~l~~ 200 (593)
++.+++. ..+++++||++|.+. ..+||.++. |+++|+.
T Consensus 161 ~~~~~~~--~~~ii~iSA~~g~ni~~~~~~~~w~~g~~---~~~~~~~ 203 (208)
T cd04166 161 AAKLGIE--DITFIPISALDGDNVVSRSENMPWYSGPT---LLEHLET 203 (208)
T ss_pred HHHcCCC--CceEEEEeCCCCCCCccCCCCCCCCCCCc---HHHHHhc
Confidence 8888764 468999999998763 348998754 5566654
No 68
>KOG1145|consensus
Probab=99.96 E-value=1.3e-27 Score=241.64 Aligned_cols=248 Identities=28% Similarity=0.297 Sum_probs=190.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCChhhhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh~~~~ 89 (593)
..--|.++||+|||||||+..|-+.....+ | ..|||..+..+..+. +++.++|+|||||.-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~---------------E-~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG---------------E-AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh---------------h-cCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 345789999999999999999975422111 1 238898887665443 67899999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
.+..+|+..+|.++|||.|.+|+.+||.|.+..++..++| +||++||||.+.. +...+++. ...-.+..+| .+
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~pekv~~eL~-~~gi~~E~~G---Gd 290 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGANPEKVKRELL-SQGIVVEDLG---GD 290 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCHHHHHHHHH-HcCccHHHcC---Cc
Confidence 9999999999999999999999999999999999999999 6779999998864 22222111 1111233333 47
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh--CCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEE
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY--IPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEEL 245 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~--l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v 245 (593)
++++|+||++| .+++.|.+++.-. +-.-..+++.|....|-+....+++|.+++--|..|+|++|+.+
T Consensus 291 VQvipiSAl~g----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vl 360 (683)
T KOG1145|consen 291 VQVIPISALTG----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVL 360 (683)
T ss_pred eeEEEeecccC----------CChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEE
Confidence 99999999998 6788888876432 11223456788999999999999999999999999999999998
Q ss_pred EEeecCCceEEEEEEEEec-ceecceeeecceEEEEeccCCccCCccceEEe
Q psy8869 246 EIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 246 ~i~p~~~~~~~~v~si~~~-~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
..+ ..+ ++|+++..+ .+++++|.|++.+.+ .|++...+ .||-+.
T Consensus 361 V~G--~~w--~KVr~l~D~nGk~i~~A~Ps~pv~V--~GwkdlP~-aGD~vl 405 (683)
T KOG1145|consen 361 VAG--KSW--CKVRALFDHNGKPIDEATPSQPVEV--LGWKDLPI-AGDEVL 405 (683)
T ss_pred EEe--chh--hhhhhhhhcCCCCccccCCCCceEe--ecccCCCC-CCceEE
Confidence 765 223 678888755 579999999998877 56653333 455554
No 69
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.95 E-value=1.4e-26 Score=262.68 Aligned_cols=286 Identities=21% Similarity=0.300 Sum_probs=199.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee---------------
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--------------- 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--------------- 72 (593)
.+....||+++||+|||||||+++|+..............+++|..++|+++|+|++.+...+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 45677899999999999999999999765432222222334689999999999999987655554
Q ss_pred -CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC------HH-
Q psy8869 73 -KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------DE- 144 (593)
Q Consensus 73 -~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~------~~- 144 (593)
.++.++|+|||||.+|..++.++++.+|++|+||||.+|+..||+.++..+...++|.++ ++||||+.. .+
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~-~iNK~D~~~~~~~~~~~~ 173 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRCFLELQVDGEE 173 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEE-EEECCcccchhhcCCHHH
Confidence 267789999999999999999999999999999999999999999999999999999655 689999882 21
Q ss_pred --HHHHHHHHHHHHHHhhcC--------CCCCCceEEEeccCcccc----------------------------------
Q psy8869 145 --ELLELVEIEIRELLNKYE--------FPGNDIPIIKGSAKLALE---------------------------------- 180 (593)
Q Consensus 145 --~~~~~~~~~~~~~l~~~~--------~~~~~~~vi~~Sa~~g~~---------------------------------- 180 (593)
..++.+.++++..+..++ +.+..-.+++.|+..++.
T Consensus 174 ~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~ 253 (843)
T PLN00116 174 AYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCC
Confidence 234444455553322221 101111233334422210
Q ss_pred ----------------------------------------------C---C------------------CCCCCcCcHHH
Q psy8869 181 ----------------------------------------------G---D------------------TGPLGEQSILS 193 (593)
Q Consensus 181 ----------------------------------------------~---~------------------~~w~~~~~~~~ 193 (593)
. . .+|+. +...
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~--~s~~ 331 (843)
T PLN00116 254 TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLP--ASDA 331 (843)
T ss_pred CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcC--ChHH
Confidence 0 0 01221 2256
Q ss_pred HHHHhhhhCCCCCC-------------------------CCCCCeeEEEEEEEEeCCCcE-EEEEEEEeeeEecCCEEEE
Q psy8869 194 LSKALDTYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEI 247 (593)
Q Consensus 194 ll~~l~~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~-v~~G~v~~G~l~~gd~v~i 247 (593)
|++.+..++|.|.. +.+.|+...|.+++..+..|. ++++||.||+|+.||.|++
T Consensus 332 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v 411 (843)
T PLN00116 332 LLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRI 411 (843)
T ss_pred HHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEE
Confidence 77777788887731 124578888999887777777 8999999999999999986
Q ss_pred eecCC--ceE-----EEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 248 IGIKD--TVK-----TTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 248 ~p~~~--~~~-----~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
.+.+. ..+ .++..|... ..++++|.||+++++. |++ .-+..|++|++..
T Consensus 412 ~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl~-~~~~~gdTL~~~~ 471 (843)
T PLN00116 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GLD-QFITKNATLTNEK 471 (843)
T ss_pred eCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--eec-ccccCCceecCCc
Confidence 53211 111 244444433 3689999999999884 332 1234588997654
No 70
>PTZ00416 elongation factor 2; Provisional
Probab=99.95 E-value=5.2e-26 Score=257.38 Aligned_cols=288 Identities=22% Similarity=0.325 Sum_probs=199.6
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC----------CeEE
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK----------ARHY 77 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~~ 77 (593)
......||+++||+|||||||+++|+..............+++|..++|++||+|++.+...+.+. ++.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 356678999999999999999999997543222111112345899999999999999876555554 6679
Q ss_pred EEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC----C--HH---HHHH
Q psy8869 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV----D--DE---ELLE 148 (593)
Q Consensus 78 ~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~----~--~~---~~~~ 148 (593)
+|+|||||.+|..++..++..+|++|+|||+.+|+..||+.++..+...++|.++ ++||||+. . ++ ..++
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv-~iNK~D~~~~~~~~~~~~~~~~~~ 173 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVL-FINKVDRAILELQLDPEEIYQNFV 173 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEE-EEEChhhhhhhcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999655 68999987 2 22 2344
Q ss_pred HHHHHHHHHHhhc--------CCCCCCceEEEeccCcccc---------------CC------CCC----CC--------
Q psy8869 149 LVEIEIRELLNKY--------EFPGNDIPIIKGSAKLALE---------------GD------TGP----LG-------- 187 (593)
Q Consensus 149 ~~~~~~~~~l~~~--------~~~~~~~~vi~~Sa~~g~~---------------~~------~~w----~~-------- 187 (593)
.+.++++..+..+ .+.+....+...|+..|+. .+ .-| |.
T Consensus 174 ~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~ 253 (836)
T PTZ00416 174 KTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIK 253 (836)
T ss_pred HHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEe
Confidence 4555666555422 1111122233333331110 00 000 00
Q ss_pred ---------------------------------------------------c-----------------CcHHHHHHHhh
Q psy8869 188 ---------------------------------------------------E-----------------QSILSLSKALD 199 (593)
Q Consensus 188 ---------------------------------------------------~-----------------~~~~~ll~~l~ 199 (593)
. +-+..|++++.
T Consensus 254 ~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~ 333 (836)
T PTZ00416 254 DETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIV 333 (836)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHH
Confidence 0 00145777788
Q ss_pred hhCCCCCC-------------------------CCCCCeeEEEEEEEEeCCCcE-EEEEEEEeeeEecCCEEEEeecCCc
Q psy8869 200 TYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEIIGIKDT 253 (593)
Q Consensus 200 ~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~-v~~G~v~~G~l~~gd~v~i~p~~~~ 253 (593)
.++|.|.. +.+.|+...|.++...+..|. +.++||.||+|+.||.|++.+.+..
T Consensus 334 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~ 413 (836)
T PTZ00416 334 DHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYV 413 (836)
T ss_pred HhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCC
Confidence 88887731 123578888888888788888 7999999999999999986532211
Q ss_pred ---eE----EEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 254 ---VK----TTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 254 ---~~----~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
.. .++..|... ..++++|.||+++++. |++....+.| +|+++.
T Consensus 414 ~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 414 PGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred CCCcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 11 124454433 3689999999999984 4444346788 887654
No 71
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.94 E-value=7.2e-26 Score=216.64 Aligned_cols=190 Identities=25% Similarity=0.316 Sum_probs=145.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC----------CeEEEEEec
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK----------ARHYAHVDC 82 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~~~iiDt 82 (593)
.||+++||+|||||||+++|+..............+++|....|++||+|++.+...+.+. +..++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4899999999999999999987653222111112347999999999999999875544433 678899999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC------CHH---HHHHHHHHH
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------DDE---ELLELVEIE 153 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~------~~~---~~~~~~~~~ 153 (593)
|||.+|...+..+++.+|++++|+|+.+|...|+++++..+...++| +|+++||+|+. +++ ..+..+..+
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~ 159 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQ 159 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999989998 55578999986 332 345556667
Q ss_pred HHHHHhhcCCC--------CCCc-e----EEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 154 IRELLNKYEFP--------GNDI-P----IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 154 ~~~~l~~~~~~--------~~~~-~----vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
+..+++.+.-. ...+ | +++.|++.||.-+.. ....+..+++.+..++|+|
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~--~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTII--KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccc--cccchHHHHHHHHhhCCCC
Confidence 77777665311 0112 5 889999998754321 1245678999999888875
No 72
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=1.5e-25 Score=215.67 Aligned_cols=176 Identities=24% Similarity=0.331 Sum_probs=140.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee------------------------E
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI------------------------E 69 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~------------------------~ 69 (593)
+|+++||.++|||||+++|+......+.+. ....++++.+|.++|+|+..... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~--~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGK--ARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCe--EEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 589999999999999999997655444333 33458999999999999865431 1
Q ss_pred EeeCCeEEEEEecCChhhhHHHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHH
Q psy8869 70 YETKARHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELL 147 (593)
Q Consensus 70 ~~~~~~~~~iiDtpGh~~~~~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~ 147 (593)
++..++.++|+|||||++|.+++..++. .+|++++|+|+.+|...++++|+..+..+++|. ++++||+|+.+. ..+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~~~~-~~~ 156 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDLAPA-NIL 156 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccccCH-HHH
Confidence 2345678999999999999999999986 799999999999999999999999999999995 557899999875 344
Q ss_pred HHHHHHHHHHHhhcCCC---------------------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 148 ELVEIEIRELLNKYEFP---------------------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 148 ~~~~~~~~~~l~~~~~~---------------------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+....++.++++..+.. .+.+|++++||.+| .|+++|++.|.. +|+
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg----------~Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG----------EGLDLLHAFLNL-LPL 223 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc----------cCHHHHHHHHHh-cCC
Confidence 55556777777643221 23569999999998 789999988875 654
No 73
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=4.6e-25 Score=210.42 Aligned_cols=168 Identities=39% Similarity=0.546 Sum_probs=136.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-------------------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK------------------- 73 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~------------------- 73 (593)
++|+++||+|||||||+.+|++. .+|..++|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 58999999999999999999632 2577888999999988876554432
Q ss_pred --------C------eEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 74 --------A------RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 74 --------~------~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
+ +.++|||||||++|..++..++..+|++++|+|+.++ ...++.+++..+...+++++++++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 2 7799999999999999999999999999999999984 678999999988888887777789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~ 206 (593)
|+.+... .....++++++++.... ...+++++||++| .++++|+++|.+.+|.|.
T Consensus 148 Dl~~~~~-~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g----------~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQ-ALENYEQIKKFVKGTIA--ENAPIIPISAQLK----------YNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHH-HHHHHHHHHHHHhcccc--CCCcEEEEeCCCC----------CCHHHHHHHHHHhCCCCC
Confidence 9987533 23333456666654322 2578999999998 789999999999888765
No 74
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=99.93 E-value=6.3e-25 Score=197.11 Aligned_cols=144 Identities=27% Similarity=0.394 Sum_probs=125.0
Q ss_pred cccceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhh
Q psy8869 416 NNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLV 495 (593)
Q Consensus 416 ~~~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 495 (593)
..+++||+++|++|+|.++++.|+++....++. .+++++|.+ |||||||++++.++.|+.+
T Consensus 3 ~~~~~WYvv~t~sG~E~~V~~~L~~~~~~~~~~--i~~i~vp~~-----------------fpGYVfVe~~~~~~~~~~i 63 (153)
T PRK08559 3 PEMSMIFAVKTTAGQERNVALMLAMRAKKENLP--IYAILAPPE-----------------LKGYVLVEAESKGAVEEAI 63 (153)
T ss_pred CCCCcEEEEEeECChHHHHHHHHHHHHHhCCCc--EEEEEccCC-----------------CCcEEEEEEEChHHHHHHH
Confidence 345789999999999999999999998877665 678888886 9999999999999999999
Q ss_pred hccCCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEE
Q psy8869 496 KNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVT 575 (593)
Q Consensus 496 ~~~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~ 575 (593)
++++++.+|++. +++.+|++.+..... ....|.+|+.|+|++|||+|++|.|.+++.++++ +.++
T Consensus 64 ~~v~~v~g~lg~------~l~~~Ei~~il~~~~-------~~~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~--v~v~ 128 (153)
T PRK08559 64 RGIPHVRGVVPG------EISFEEVEHFLKPKP-------IVEGIKEGDIVELIAGPFKGEKARVVRVDESKEE--VTVE 128 (153)
T ss_pred hcCCCEeeeCCC------CCCHHHHHHHHhccC-------cccCCCCCCEEEEeccCCCCceEEEEEEcCCCCE--EEEE
Confidence 999999999962 599999999884321 1245999999999999999999999999988744 7789
Q ss_pred ecCcceE--EeeccCceeeC
Q psy8869 576 IFGRATP--VELEFNQVEKI 593 (593)
Q Consensus 576 ~~g~~~~--v~~~~~~l~~~ 593 (593)
++|+.++ |+++.++|+.+
T Consensus 129 ll~~~~~~pv~v~~~~~~~~ 148 (153)
T PRK08559 129 LLEAAVPIPVTVRGDQVRVV 148 (153)
T ss_pred EECCcceeeEEEeccEEEEe
Confidence 9999966 99999999763
No 75
>KOG0465|consensus
Probab=99.93 E-value=2.1e-25 Score=228.24 Aligned_cols=270 Identities=23% Similarity=0.325 Sum_probs=207.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhh---hcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSK---KFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
+...||++..|.||||||+..+.+.-... .+..... ...||..+.|+++|+|+..+...+.+.++++++||||||.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 56789999999999999999998743221 1111111 3468999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH--HHHHHHHH------------
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE--ELLELVEI------------ 152 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~--~~~~~~~~------------ 152 (593)
+|..+..++++..|++++|+|+..|++.||...+..++..++|++.+ |||||..... ...+.+..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~F-iNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICF-INKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEE-EehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 99999999999999999999999999999999999999999998775 7999986421 11111111
Q ss_pred -------------------------------------------------------------------------HHHHHHh
Q psy8869 153 -------------------------------------------------------------------------EIRELLN 159 (593)
Q Consensus 153 -------------------------------------------------------------------------~~~~~l~ 159 (593)
++...++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 0001111
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC--------------------CCCC-CeeEEEE
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDG-AFLLPVE 218 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~--------------------~~~~-~~~~~i~ 218 (593)
+.-+....+|++..||+++ .|+..|++++..+||.|.. ..++ ||....+
T Consensus 275 r~Ti~r~fvPVl~GSAlKN----------kGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAF 344 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKN----------KGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAF 344 (721)
T ss_pred HHHhhcceeeEEechhhcc----------cCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEE
Confidence 1112245789999999987 6888999999999998743 1122 7777777
Q ss_pred EEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecc----eecceeeecceEEEEeccCCccCCccceE
Q psy8869 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR----KLLDQGQAGDNIGLLLRGTKREDVERGQV 294 (593)
Q Consensus 219 ~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~----~~~~~a~aG~~v~l~l~~~~~~~i~~G~v 294 (593)
++..-+. |..-+-|+.+|+|+.||.++-. ..+.++++.-+-+.| ++++++.|||+|++ -|+ +...||+
T Consensus 345 Kle~g~f-GqLTyvRvYqG~L~kG~~iyN~--rtgKKvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDT 416 (721)
T KOG0465|consen 345 KLEEGRF-GQLTYVRVYQGTLSKGDTIYNV--RTGKKVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDT 416 (721)
T ss_pred EeeecCc-cceEEEEEeeeeecCCcEEEec--CCCceeEhHHHhHhcccccchhhhhhccceeee--ecc---ccccCce
Confidence 7766555 8888999999999999999854 344667776554333 68999999999988 454 7888999
Q ss_pred EecCC
Q psy8869 295 LAKPG 299 (593)
Q Consensus 295 l~~~~ 299 (593)
+.+..
T Consensus 417 ftd~~ 421 (721)
T KOG0465|consen 417 FTDKQ 421 (721)
T ss_pred eccCc
Confidence 99874
No 76
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=1.8e-23 Score=235.52 Aligned_cols=243 Identities=25% Similarity=0.303 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC------------------eEEEEEecCChh
Q psy8869 25 KTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA------------------RHYAHVDCPGHA 86 (593)
Q Consensus 25 KSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------~~~~iiDtpGh~ 86 (593)
||||+.+|.+... ...-..|+|+++....+..+. ..++|||||||+
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999986432 122345899988777665542 127999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC-HH----------------HHHHH
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DE----------------ELLEL 149 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~-~~----------------~~~~~ 149 (593)
.|...+..++..+|++++|+|+++|...||.+++..+...++| +++++||+|+.+ +. ...++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 9998888888999999999999999999999999999999998 556789999963 21 11222
Q ss_pred HHHHHHHH---HhhcCCC----------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC-----CCCCCCCC
Q psy8869 150 VEIEIREL---LNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP-----TPNRAIDG 211 (593)
Q Consensus 150 ~~~~~~~~---l~~~~~~----------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~-----~~~~~~~~ 211 (593)
+...+.++ |...++. ...+|++|+||++| .|+++|+++|....+ ....+.+.
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG----------eGId~Ll~~l~~l~~~~l~~~L~~~~~~ 686 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG----------EGIPELLMMVAGLAQKYLEERLKLNVEG 686 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC----------CCHHHHHHHHHHhhHHhhhhhhccCCCC
Confidence 22222122 3444443 23689999999998 789999988764322 12334678
Q ss_pred CeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec------------ceecceeeecceEEE
Q psy8869 212 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF------------RKLLDQGQAGDNIGL 279 (593)
Q Consensus 212 ~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~------------~~~~~~a~aG~~v~l 279 (593)
|+++.|.+++.++|.|++++|.|.+|+|++||.|.++|......++|+++... ..++++|.|..-|.+
T Consensus 687 ~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki 766 (1049)
T PRK14845 687 YAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKI 766 (1049)
T ss_pred ceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEE
Confidence 99999999999999999999999999999999999998644456889988632 235667777766666
Q ss_pred EeccCCccCCccceEEe
Q psy8869 280 LLRGTKREDVERGQVLA 296 (593)
Q Consensus 280 ~l~~~~~~~i~~G~vl~ 296 (593)
...|++ .+..|+-+.
T Consensus 767 ~a~gl~--~~~aG~~~~ 781 (1049)
T PRK14845 767 AAPGLE--EVLAGSPIR 781 (1049)
T ss_pred ecCCcc--ccCCCCeEE
Confidence 544544 335666654
No 77
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=9.1e-24 Score=200.06 Aligned_cols=172 Identities=35% Similarity=0.559 Sum_probs=136.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--------------CeEEE
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--------------ARHYA 78 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~~~ 78 (593)
+||+++||+|+|||||+++|+... ....+|...+|.++|+|++.....+... +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~---------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIA---------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhcc---------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 589999999999999999998531 1124688889999999999877666554 67899
Q ss_pred EEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHH---HHHHHHHHHH
Q psy8869 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE---LLELVEIEIR 155 (593)
Q Consensus 79 iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~---~~~~~~~~~~ 155 (593)
+||||||.+|...+..++..+|++++|+|+.++...++.+++..+...+.|.+ +++||+|+...+. ..+.+++.+.
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999988899888887777888754 5689999986432 2333333333
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~ 206 (593)
..+...++ ..+|++++||++| .++.+|+++|...+++|.
T Consensus 151 ~~~~~~~~--~~~~vi~iSa~~g----------~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 151 KTLEKTRF--KNSPIIPVSAKPG----------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHhcCc--CCCCEEEEeccCC----------CCHHHHHHHHHhcccccc
Confidence 33433333 2578999999998 789999999999888764
No 78
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.91 E-value=1.5e-23 Score=207.25 Aligned_cols=128 Identities=33% Similarity=0.426 Sum_probs=112.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
||+++||+|||||||+++|+.......+ ......+.+|..++|+++|+|++.....+++.+..++|||||||.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 6999999999999999999865432211 11112457899999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
+..++..+|++++|||+.+|...++.+++..+...++|.++ ++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~iv-viNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIA-FVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE-EEECCCCCC
Confidence 99999999999999999999999999999999999999765 689999875
No 79
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.3e-23 Score=196.56 Aligned_cols=189 Identities=32% Similarity=0.406 Sum_probs=145.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
..+|+++|++|+|||||+++|+..............+.++..+.|..+|+|+......++.....+.+||||||++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46899999999999999999996422111111111244778888999999999888888888999999999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC--CCce
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--NDIP 169 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 169 (593)
+..++..+|++++|+|++++...++.+++..+...++|.++ ++||+|+.+.. .+....++.+++..++... ..++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~ii-v~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIV-VINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEE-EEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999999998888888888888788999655 68999997531 2233445556555444321 2578
Q ss_pred EEEeccCccccCCC--CCCCcCcHHHHHHHhhhhCCCC
Q psy8869 170 IIKGSAKLALEGDT--GPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 170 vi~~Sa~~g~~~~~--~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
++++||++|.+... .| .+++++|++.|.+++|.|
T Consensus 159 iv~~Sa~~g~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 159 VLYASAKNGWASLNLEDP--SEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEEeehhccccccccccc--hhhHHHHHHHHHhcCCCC
Confidence 99999999976532 33 468999999999988765
No 80
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.91 E-value=2.9e-23 Score=201.75 Aligned_cols=181 Identities=33% Similarity=0.468 Sum_probs=144.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
||+++||+|+|||||+++|+.......+ ........+|..+.|+++|+|+......+++++.++++||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 6899999999999999999976432211 11122356889999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC--HHHHHHHHHHHHHH-------------
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD--DEELLELVEIEIRE------------- 156 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~--~~~~~~~~~~~~~~------------- 156 (593)
+..+++.+|++++|+|+.+|...++.+++..+...++|.++ ++||+|+.. .++.++.++..+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~ii-vvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 159 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTII-FVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPN 159 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE-EEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeee
Confidence 99999999999999999999999999999999999999765 679999874 34444444433210
Q ss_pred ---------------------HHhhc----C--------------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHH
Q psy8869 157 ---------------------LLNKY----E--------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKA 197 (593)
Q Consensus 157 ---------------------~l~~~----~--------------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~ 197 (593)
++..+ . ..+.-+|+++.||.++ .|+..|++.
T Consensus 160 ~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~----------~Gv~~ll~~ 229 (237)
T cd04168 160 ICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG----------IGIEELLEG 229 (237)
T ss_pred eeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCC----------cCHHHHHHH
Confidence 00000 0 0135689999999997 689999999
Q ss_pred hhhhCCCC
Q psy8869 198 LDTYIPTP 205 (593)
Q Consensus 198 l~~~l~~~ 205 (593)
|..++|.|
T Consensus 230 ~~~~~p~~ 237 (237)
T cd04168 230 ITKLFPTS 237 (237)
T ss_pred HHHhcCCC
Confidence 99998865
No 81
>KOG0469|consensus
Probab=99.91 E-value=1.4e-23 Score=209.51 Aligned_cols=288 Identities=23% Similarity=0.307 Sum_probs=209.7
Q ss_pred cccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEE--------------
Q psy8869 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-------------- 70 (593)
Q Consensus 5 ~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-------------- 70 (593)
-+..+++..|+.++.|+|||||||...|...........+-...++|....|++||+||..+.+.+
T Consensus 12 lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~ 91 (842)
T KOG0469|consen 12 LMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQ 91 (842)
T ss_pred HhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcC
Confidence 345677889999999999999999999997765554444444557999999999999999875543
Q ss_pred --eeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC------C
Q psy8869 71 --ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------D 142 (593)
Q Consensus 71 --~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~------~ 142 (593)
+.++..+++||.|||-+|..+...+++..|++++|||+-+|+.-||...|..+....|..++| +||+|.. +
T Consensus 92 ~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv-~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 92 EGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLV-MNKMDRALLELQLS 170 (842)
T ss_pred CCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEE-eehhhHHHHhhcCC
Confidence 234667889999999999999999999999999999999999999999999999998887764 7999953 3
Q ss_pred HHHHHHHHHHHHHH---HHhhcCCC--------CCCceEEEeccCccccC------------------------------
Q psy8869 143 DEELLELVEIEIRE---LLNKYEFP--------GNDIPIIKGSAKLALEG------------------------------ 181 (593)
Q Consensus 143 ~~~~~~~~~~~~~~---~l~~~~~~--------~~~~~vi~~Sa~~g~~~------------------------------ 181 (593)
.++.++.+...++. .+..++.. +..-.+-++|+++||.-
T Consensus 171 ~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f 250 (842)
T KOG0469|consen 171 QEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFF 250 (842)
T ss_pred HHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhccccc
Confidence 45555544433332 22223221 12223456777777650
Q ss_pred ---CCCCCCc--------------------------------------------------------------------Cc
Q psy8869 182 ---DTGPLGE--------------------------------------------------------------------QS 190 (593)
Q Consensus 182 ---~~~w~~~--------------------------------------------------------------------~~ 190 (593)
+.+|.+. +.
T Consensus 251 ~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPA 330 (842)
T KOG0469|consen 251 NPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPA 330 (842)
T ss_pred CccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcch
Confidence 1133211 23
Q ss_pred HHHHHHHhhhhCCCCCC-------------------------CCCCCeeEEEEEEEEeCCCcEE-EEEEEEeeeEecCCE
Q psy8869 191 ILSLSKALDTYIPTPNR-------------------------AIDGAFLLPVEDVFSISGRGTV-VTGRVERGIVRVGEE 244 (593)
Q Consensus 191 ~~~ll~~l~~~l~~~~~-------------------------~~~~~~~~~i~~~~~~~~~G~v-~~G~v~~G~l~~gd~ 244 (593)
.+.|++.|.-++|.|.. +.+.|+.|+|++.......|+. ++|+|.+|.+..|++
T Consensus 331 adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~K 410 (842)
T KOG0469|consen 331 ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLK 410 (842)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcE
Confidence 35667766666776522 5678999999999988888764 589999999999999
Q ss_pred EEEeecCC--c--eEEEEEEEEe-------cceecceeeecceEEEEeccCCccCCccceEE
Q psy8869 245 LEIIGIKD--T--VKTTCTGVEM-------FRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (593)
Q Consensus 245 v~i~p~~~--~--~~~~v~si~~-------~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl 295 (593)
+++...+- + ...-.++|++ .-++++...||.++++ .|++.-.++.|.+-
T Consensus 411 vRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGl--vGvDqfLvKtGTiT 470 (842)
T KOG0469|consen 411 VRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGL--VGVDQFLVKTGTIT 470 (842)
T ss_pred EEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEE--eehhHhhhccCcee
Confidence 99974221 1 1122344442 2478899999999998 57777777777543
No 82
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=99.90 E-value=8.7e-23 Score=182.86 Aligned_cols=140 Identities=27% Similarity=0.404 Sum_probs=118.5
Q ss_pred EEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhccCCe
Q psy8869 422 YVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKKV 501 (593)
Q Consensus 422 yvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~v 501 (593)
|+++|++|+|+++++.|+++.++.+++ .+.+++|. +|||||||+++..++.|..+++++|+
T Consensus 1 Yvv~t~~g~E~~v~~~L~~~~~~~~~~--~~~~~vp~-----------------~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 1 FAVKTSVGQEKNVARLMARKARKSGLE--VYSILAPE-----------------SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CeEEeeCChHHHHHHHHHHHHhhCCCc--EEEEEccC-----------------CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 899999999999999998888665543 33445544 39999999999888999999999999
Q ss_pred eEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcce
Q psy8869 502 TGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRAT 581 (593)
Q Consensus 502 ~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~ 581 (593)
.++++. +||++|++.|+.. . . . ...+.+||.|+|++|||+|++|.|.+++.+++++.|.+..+++.+
T Consensus 62 ~~~v~~------~i~~~ei~~l~~~--~-~-~---~~~~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~ 128 (145)
T TIGR00405 62 RGVVEG------EIDFEEIERFLTP--K-K-I---IESIKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEAAVPI 128 (145)
T ss_pred EeecCC------CCCHHHHHHHhcc--c-c-c---ccccCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEcCccc
Confidence 999952 5999999998752 1 1 1 124899999999999999999999999988888888888888888
Q ss_pred EEeeccCceeeC
Q psy8869 582 PVELEFNQVEKI 593 (593)
Q Consensus 582 ~v~~~~~~l~~~ 593 (593)
+|+++.++|+++
T Consensus 129 ~v~v~~~~l~~~ 140 (145)
T TIGR00405 129 PVTVKGDQVRII 140 (145)
T ss_pred eEEEeeeEEEEe
Confidence 899999999874
No 83
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.89 E-value=3.9e-22 Score=197.01 Aligned_cols=131 Identities=30% Similarity=0.424 Sum_probs=111.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcC---Cc---cccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFG---GE---AKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~---~~---~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
..||+++||+|||||||+++|+.......+ .. ......+|..+.|+++|+|+......+++.+..+++||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 468999999999999999999865332211 10 012345788999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
.+|...+..+++.+|++++|+|++++...++..++..+...++|.+ +++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccCCC
Confidence 9999999999999999999999999999999999988888899955 56899998653
No 84
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=6.3e-22 Score=182.26 Aligned_cols=162 Identities=44% Similarity=0.669 Sum_probs=127.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~~~~~~ 91 (593)
++|+++|++|+|||||+++|++.. .+..+.+..+++|++..+..+... +..+.+|||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 479999999999999999998431 233455666788888877666665 778999999999999998
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEE
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 171 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi 171 (593)
+..++..+|++++|+|++++...++.+++..+...+.+++++++||+|+.+.. ..+....++.+.++..+. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED-WLELVEEEIRELLAGTFL--ADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH-HHHHHHHHHHHHHHhcCc--CCCcEE
Confidence 88889999999999999998888999988877777874566778999998753 223334455666654332 257899
Q ss_pred EeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 172 KGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 172 ~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++||++| .+++++++.+..
T Consensus 145 ~~Sa~~~----------~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTG----------EGIEELKEYLDE 163 (164)
T ss_pred EEeCCCC----------cCHHHHHHHHhh
Confidence 9999998 688999888754
No 85
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=7e-22 Score=184.99 Aligned_cols=174 Identities=26% Similarity=0.371 Sum_probs=131.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEE-----eeCCeEEEEEecCChhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-----ETKARHYAHVDCPGHAD 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~~~iiDtpGh~~ 87 (593)
.||+++|++|+|||||+++|++........ ....++++....|+.+|+|........ +..+..+.|||||||.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 479999999999999999999753221111 112346788889999999988765444 33466788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
|...+..++..+|++|+|+|++++...++.+++..+...++|. ++++||+|+.+.. ......++. +.++++ .
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl~~~~--~~~~~~~~~---~~~~~~--~ 151 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEI-IPVINKIDLPSAD--PERVKQQIE---DVLGLD--P 151 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCE-EEEEECCCCCcCC--HHHHHHHHH---HHhCCC--c
Confidence 9999999999999999999999988888888887777788885 4568999987531 111222333 333332 2
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
.+++++||++| .++++|+++|...+|.|
T Consensus 152 ~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 SEAILVSAKTG----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred ccEEEeeccCC----------CCHHHHHHHHHhhCCCC
Confidence 45999999998 78999999999887755
No 86
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.89 E-value=6.8e-22 Score=190.20 Aligned_cols=190 Identities=23% Similarity=0.322 Sum_probs=140.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhc---CCccccccccCCChhhhhcCceEEeeeeEEee-----CCeEEEEEecCC
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKF---GGEAKSYDQIDAAPEEKARGITINTAHIEYET-----KARHYAHVDCPG 84 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~~~iiDtpG 84 (593)
.||+++||+|+|||||+++|+....... .......+++|....|+++|+|+......+.. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3799999999999999999997654332 22333345689999999999999877666543 246789999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC------H---HHHHHHHHHHHH
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------D---EELLELVEIEIR 155 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~------~---~~~~~~~~~~~~ 155 (593)
|.+|...+..++..+|++++|+|+.++...++.+++..+...++|.+ +++||+|++. . .+.++.+..++.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888877888854 5689999861 1 245556666788
Q ss_pred HHHhhcCCCC------CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 156 ELLNKYEFPG------NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 156 ~~l~~~~~~~------~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
.+++.+++.. .+..++..|++.+|.-+.. ....+.+|++.|.+.+|.|
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE--SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCCeEEecH--HHHhhhhHHHHHHhhCCCC
Confidence 8887776532 1223667777765432111 0134557888888777654
No 87
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=1.7e-21 Score=183.85 Aligned_cols=180 Identities=42% Similarity=0.606 Sum_probs=144.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|.+|+|||||+++|++...............++....+..+++|+......++.....+.||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999875544443333334577788899999999988888888888999999999999999999
Q ss_pred HhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC---------C
Q psy8869 94 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF---------P 164 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~---------~ 164 (593)
..+..+|++++|+|+.++...+..+++..+...+.|. ++++||+|+...++ .+....++.+.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKIDRVGEED-LEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECCCCcchhc-HHHHHHHHHHHHccccccchhhhhccc
Confidence 9999999999999999988888888888888778884 55689999987422 23344456666665443 2
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
....+++++||++| .++++++++|...+|+|
T Consensus 159 ~~~~~v~~~Sa~~g----------~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTG----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccC----------cCHHHHHHHHHhhCCCC
Confidence 24689999999998 68999999999888754
No 88
>KOG1144|consensus
Probab=99.86 E-value=4.5e-21 Score=199.51 Aligned_cols=235 Identities=25% Similarity=0.296 Sum_probs=167.9
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe------------------e
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE------------------T 72 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------~ 72 (593)
....++|+||+|+|||-|+..|.+.....+. ..|+|..+..-.|. +
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege----------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE----------------AGGITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc----------------ccceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 3457899999999999999999765333222 12455444322221 1
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC-CH-----HHH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV-DD-----EEL 146 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~-~~-----~~~ 146 (593)
.--.+.+||||||+.|.+...+|.+.||.+|||||..+|+.+||.|.+.+++..+.| |||++||+|.. +| ..+
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchH
Confidence 223478999999999999999999999999999999999999999999999999999 67799999964 22 111
Q ss_pred HH-----------HHHHHHHHH---HhhcCCC----------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 147 LE-----------LVEIEIREL---LNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 147 ~~-----------~~~~~~~~~---l~~~~~~----------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++ ++...+..+ +..-+++ +..+.++|+||.+| .|+.+|+-+|.++.
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG----------eGipdLl~llv~lt 686 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG----------EGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC----------CCcHHHHHHHHHHH
Confidence 11 111111111 1111221 24578999999998 78889888887653
Q ss_pred CCCC---CCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCc--------------eEEEEEEEEecc
Q psy8869 203 PTPN---RAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT--------------VKTTCTGVEMFR 265 (593)
Q Consensus 203 ~~~~---~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~--------------~~~~v~si~~~~ 265 (593)
.... -..-..+.+.|.++-.++|.|+.+-.-+..|.|+.||.|.+++.... ...+|++-+.|+
T Consensus 687 Qk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hh 766 (1064)
T KOG1144|consen 687 QKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHH 766 (1064)
T ss_pred HHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeeh
Confidence 2110 01234577889999999999999999999999999999999864321 346777777777
Q ss_pred eecceee
Q psy8869 266 KLLDQGQ 272 (593)
Q Consensus 266 ~~~~~a~ 272 (593)
..+..|.
T Consensus 767 kEvkaA~ 773 (1064)
T KOG1144|consen 767 KEVKAAQ 773 (1064)
T ss_pred hHhhhhc
Confidence 6655443
No 89
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=99.86 E-value=3.6e-21 Score=163.50 Aligned_cols=105 Identities=41% Similarity=0.883 Sum_probs=97.4
Q ss_pred eeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhccC
Q psy8869 420 RWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTK 499 (593)
Q Consensus 420 ~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~ 499 (593)
+||+++|++|+|+++++.|.++....+....++++|+|++...+.++|+++.+.+|||||||||+++..+..|..+++++
T Consensus 1 ~Wyvv~~~~g~E~~v~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpGYvFv~~~~~~~~~~~i~~~~ 80 (106)
T smart00738 1 NWYAVRTTSGQEKRVAENLERKAEALGLEDKIVSILVPTEEVKEIRRGKKKVVERPLFPGYIFVEADLEDEVWTAIRGTP 80 (106)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHhcCCccccCEEEeeEEEEEEecCCEEEEEEEecCCCEEEEEEEeCCcHHHHHhcCC
Confidence 59999999999999999999888777777779999999998888899999999999999999999998888899999999
Q ss_pred CeeEeccCCCCCceecCHHHHHHHHH
Q psy8869 500 KVTGFIGGKSNRPTPISSKEIEEILK 525 (593)
Q Consensus 500 ~v~~~l~~~~~~p~~i~~~~~~~l~~ 525 (593)
|+.+|++. ++.|.+||++||+.|++
T Consensus 81 ~v~~~v~~-~~~p~~v~~~e~~~l~~ 105 (106)
T smart00738 81 GVRGFVGG-GGKPTPVPDDEIEKILK 105 (106)
T ss_pred CccEECCC-CCeeeECCHHHHHHHhh
Confidence 99999987 67899999999999875
No 90
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.84 E-value=9.9e-20 Score=181.46 Aligned_cols=128 Identities=30% Similarity=0.414 Sum_probs=109.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcC-Cc-cccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFG-GE-AKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
||+++||+|+|||||+++|+.......+ +. ....+.+|..++|+.+++|+......+++++..+++||||||.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 6899999999999999999864322111 11 112345788999999999999888888999999999999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
+..++..+|++++|+|++.+...++..++..+...++|.++ ++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~ii-vvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRII-FINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE-EEECCccCC
Confidence 99999999999999999999999999999999999999766 579999875
No 91
>KOG0467|consensus
Probab=99.82 E-value=1.7e-18 Score=181.89 Aligned_cols=171 Identities=25% Similarity=0.333 Sum_probs=134.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.....||+++.|+|||||||...|+...+-....-+-.-.+||..++|+.||+|...+.+....+++.+++||+|||-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 45678999999999999999999986544333222223357999999999999999998888888999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCC------CCHHHHHHHHH---HHHHHHHh
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM------VDDEELLELVE---IEIRELLN 159 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl------~~~~~~~~~~~---~~~~~~l~ 159 (593)
.....++..-+|.++++||+.+|+..||...+..+-..+...++ |+||||. .++.+.++.+. .+++....
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~l-vinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~ 164 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPIL-VINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIG 164 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEE-EEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999998665 5899993 23334443322 23332222
Q ss_pred -------------------hcCCCCCCceEEEeccCcccc
Q psy8869 160 -------------------KYEFPGNDIPIIKGSAKLALE 180 (593)
Q Consensus 160 -------------------~~~~~~~~~~vi~~Sa~~g~~ 180 (593)
..-+.+.+-.++..||.+|+.
T Consensus 165 ~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~ 204 (887)
T KOG0467|consen 165 QFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWG 204 (887)
T ss_pred HhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccc
Confidence 222334566799999998865
No 92
>KOG0464|consensus
Probab=99.82 E-value=5.8e-21 Score=186.88 Aligned_cols=272 Identities=24% Similarity=0.333 Sum_probs=190.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhc--CCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
+..||+++.|+|+||||...+++...+... +.-.....++|....|++||+|+..+..+|++.++++++||||||.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 456999999999999999999986544322 111222345788899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHH-----------
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIR----------- 155 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~----------- 155 (593)
.-+.-+-++..|+++.|+|++.|++.||...+..+...++|... ++||||.... +...+.+.+.+.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~-finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ 194 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHC-FINKMDKLAANFENAVDSIEEKLGAKALKLQLPIG 194 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhh-hhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccc
Confidence 88888888999999999999999999999999999999999765 5799998643 111222221111
Q ss_pred -------------------------------------------------------------------HHHhhcC------
Q psy8869 156 -------------------------------------------------------------------ELLNKYE------ 162 (593)
Q Consensus 156 -------------------------------------------------------------------~~l~~~~------ 162 (593)
.+++.+.
T Consensus 195 eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i 274 (753)
T KOG0464|consen 195 EAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKI 274 (753)
T ss_pred ccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccccc
Confidence 0000000
Q ss_pred -------------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCC-------CCCeeEEEEEEEE
Q psy8869 163 -------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAI-------DGAFLLPVEDVFS 222 (593)
Q Consensus 163 -------------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~-------~~~~~~~i~~~~~ 222 (593)
......|+.+.||.++ .|+..|++++.-++|.|.... ...+....+++..
T Consensus 275 ~a~elksai~~lt~aq~a~~i~cgsaikn----------kgiqplldavtmylpspeernyeflqwykddlcalafkvlh 344 (753)
T KOG0464|consen 275 DAEELKSAIHELTCAQKAAPILCGSAIKN----------KGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLH 344 (753)
T ss_pred CHHHHHHHHHHHhhhhhhcceehhhhhcc----------cCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhc
Confidence 0012345666666654 577788898888888775421 2344445566667
Q ss_pred eCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEe----cceecceeeecceEEEEeccCCccCCccceEEecC
Q psy8869 223 ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEM----FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 298 (593)
Q Consensus 223 ~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~----~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 298 (593)
.+.+|..++-++.+|+++.+-.+.-. ...+.-.+-.+.. .+..+++..||.+.-. .|++ ....||+++.+
T Consensus 345 dkqrg~l~fmriysgsi~~~~ai~ni--n~~~se~~~kl~~pfade~~~i~qlsagnialt--~glk--~tatgdtivas 418 (753)
T KOG0464|consen 345 DKQRGPLSFMRIYSGSIHNNLAIFNI--NGMCSEGILKLFLPFADEHREIEQLSAGNIALT--AGLK--HTATGDTIVAS 418 (753)
T ss_pred ccccCceeEEEEecccccCceeeeec--ccccccchHhhhccchhhhhhhhhcccccEEEE--ecce--eeccCCeEEec
Confidence 78899999999999999998776532 1111111111111 1345788889965433 3333 34579998866
Q ss_pred C
Q psy8869 299 G 299 (593)
Q Consensus 299 ~ 299 (593)
.
T Consensus 419 k 419 (753)
T KOG0464|consen 419 K 419 (753)
T ss_pred c
Confidence 4
No 93
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=1.1e-18 Score=161.36 Aligned_cols=159 Identities=39% Similarity=0.460 Sum_probs=116.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---CeEEEEEecCChhhhHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGHADYIK 90 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpGh~~~~~ 90 (593)
.|+++|++|+|||||+++|+..... .....++|.+.....++.. +..+.+|||||+..|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 4899999999999999999853211 1122356666555555553 67899999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC-CCCCCce
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE-FPGNDIP 169 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 169 (593)
.+..++..+|++++|+|++++...++.+++..+...++|.+ +++||+|+.+.. .+.+...+..+..... .....++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceeccccc--HHHHHHHHHHhhccccccccCcCc
Confidence 88888899999999999999888899999988888999954 568999987532 1122223332221110 0113578
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++++||++| .++.+|+++|...
T Consensus 143 ~~~~Sa~~~----------~gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTG----------EGIDDLLEAILLL 164 (168)
T ss_pred EEEeecccC----------CCHHHHHHHHHHh
Confidence 999999998 6899999998764
No 94
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=2.3e-19 Score=160.40 Aligned_cols=148 Identities=25% Similarity=0.335 Sum_probs=100.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY---- 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~---- 88 (593)
++|+++|.+|+|||||+|+|++.....++ -.|.|++.....+.+.+..+.|+|+||-..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n----------------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN----------------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE----------------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC----------------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 58999999999999999999986533322 2388888888889999999999999993221
Q ss_pred --HHHHHHh--hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 --IKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 --~~~~~~~--~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
.+-.... ...+|++++|+||++ ..+....+..+..+|+|. |+++||+|+..... +......+.+.+
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~-vvvlN~~D~a~~~g----~~id~~~Ls~~L--- 134 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPV-VVVLNKMDEAERKG----IEIDAEKLSERL--- 134 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSE-EEEEETHHHHHHTT----EEE-HHHHHHHH---
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCE-EEEEeCHHHHHHcC----CEECHHHHHHHh---
Confidence 1111222 247999999999986 344445556677789995 55689999765311 111222333333
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 198 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l 198 (593)
.+|++++||+++ .|+++|+++|
T Consensus 135 --g~pvi~~sa~~~----------~g~~~L~~~I 156 (156)
T PF02421_consen 135 --GVPVIPVSARTG----------EGIDELKDAI 156 (156)
T ss_dssp --TS-EEEEBTTTT----------BTHHHHHHHH
T ss_pred --CCCEEEEEeCCC----------cCHHHHHhhC
Confidence 378999999998 7899998865
No 95
>PF02357 NusG: Transcription termination factor nusG; InterPro: IPR006645 This sequence is identified by the NGN domain and is represented by the bacterial antitermination protein NusG. This protein influences transcription termination and anti-termination and acts as a component of the transcription complex. In addition to this, it interacts with the termination factor Rho and RNA polymerase [, ].; GO: 0032968 positive regulation of transcription elongation from RNA polymerase II promoter; PDB: 1NZ8_A 2OUG_C 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2XHA_A 2XHC_A 2K06_A.
Probab=99.81 E-value=6.7e-20 Score=151.13 Aligned_cols=89 Identities=28% Similarity=0.681 Sum_probs=75.0
Q ss_pred ceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEe--cC-ceEEEEecccCcEEEEEEeeChhhhhhh
Q psy8869 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVK--KN-QKSVIKKRFFPGYVLIEMEMTDESWHLV 495 (593)
Q Consensus 419 ~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~--~g-~~~~~~~plfpgYvFv~~~~~~~~~~~i 495 (593)
|+|||++|++|+|.++++.| ..+++++|+|+.+..+++ +| +.+.+.+|||||||||++++++ .+..+
T Consensus 1 k~WYvl~~~~~~E~~v~~~L---------~~~~i~~~~P~~~~~~~~~~~g~~~~~~~~plfpgYvFv~~~~~~-~~~~i 70 (92)
T PF02357_consen 1 KRWYVLRTKPGKEQKVAERL---------ERQGIEAFLPMREVIRRRKPRGKKVKRVERPLFPGYVFVRMDMED-ELWKI 70 (92)
T ss_dssp -EEEEEEESTTTHHHHHHHH---------CHHHHHHE-SEEEEEECSSSSSCSEEEEEEESSTTEEEEEE-TTH-HHHHH
T ss_pred CEEEEEEEECChHHHHHHHH---------HHcCCceeccEEEEEEEEecCCceEEEEEEEecCcEEEEEEEcch-hhhhh
Confidence 68999999999999999999 778888899999997764 67 4666899999999999999763 44667
Q ss_pred hccCCeeEeccCCCCCceecCHH
Q psy8869 496 KNTKKVTGFIGGKSNRPTPISSK 518 (593)
Q Consensus 496 ~~~~~v~~~l~~~~~~p~~i~~~ 518 (593)
++++|+.+||++ +++|.+|||+
T Consensus 71 ~~~~gv~~~l~~-g~~p~~vpd~ 92 (92)
T PF02357_consen 71 RSTPGVSGFLRF-GGKPAPVPDE 92 (92)
T ss_dssp HHSTTEEEEEES-SSSSBEB-HH
T ss_pred hcCCCeEEEEcC-CCEEeecCCC
Confidence 999999999998 6999999985
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=175.82 Aligned_cols=149 Identities=26% Similarity=0.373 Sum_probs=123.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG------ 84 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG------ 84 (593)
..++|+++|.+|+|||||+|+|++...... .-..|+|.+.-...++++++.|.++||+|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv---------------~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIV---------------SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEe---------------cCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 569999999999999999999997532221 12348999998899999999999999999
Q ss_pred ----hhhh-HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHHHHHHHHHH
Q psy8869 85 ----HADY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRELL 158 (593)
Q Consensus 85 ----h~~~-~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~~~~~~~~l 158 (593)
++.| ...+..++..+|.++||+||++|...|....+.++...|.+.+| ++||+|+.+. +...+..+.+++..+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI-vvNKWDl~~~~~~~~~~~k~~i~~~l 320 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI-VVNKWDLVEEDEATMEEFKKKLRRKL 320 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE-EEEccccCCchhhHHHHHHHHHHHHh
Confidence 4455 34455677899999999999999999999999999999999666 5799999874 456677777888877
Q ss_pred hhcCCCCCCceEEEeccCccc
Q psy8869 159 NKYEFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~ 179 (593)
..+++ .|++++||++|.
T Consensus 321 ~~l~~----a~i~~iSA~~~~ 337 (444)
T COG1160 321 PFLDF----APIVFISALTGQ 337 (444)
T ss_pred ccccC----CeEEEEEecCCC
Confidence 77665 799999999983
No 97
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=5.7e-18 Score=162.59 Aligned_cols=161 Identities=22% Similarity=0.197 Sum_probs=114.9
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC-h----
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG-H---- 85 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-h---- 85 (593)
..--|+++|.+|+|||||+|+|.+......+... .+|-+.-..-+..++.++.|+|||| |
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~---------------QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCc---------------chhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 4567999999999999999999976433222111 2222222333556788999999999 2
Q ss_pred ---hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 86 ---ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 86 ---~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+...+....++..+|.+++|||+.++........+..++..+.|.++ ++||+|..+.+.....+. ..+-....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil-~iNKID~~~~~~~l~~~~---~~~~~~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVIL-VVNKIDKVKPKTVLLKLI---AFLKKLLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEE-EEEccccCCcHHHHHHHH---HHHHhhCC
Confidence 22245555667799999999999998888778788888887788655 689999998754222222 22222222
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
...++|+||++| .+++.|++.+..++|.
T Consensus 146 ----f~~ivpiSA~~g----------~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 146 ----FKEIVPISALKG----------DNVDTLLEIIKEYLPE 173 (298)
T ss_pred ----cceEEEeecccc----------CCHHHHHHHHHHhCCC
Confidence 347999999998 6899999999998874
No 98
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=5.9e-18 Score=180.80 Aligned_cols=161 Identities=26% Similarity=0.291 Sum_probs=118.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|++|+|||||+++|++.... ......|+|.+.....++.++..+.+|||||+.++.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV---------------IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee---------------ecCCCCCceECcEeEEEEECCcEEEEEECCCccccc
Confidence 45689999999999999999999853210 011234777777667777788899999999964432
Q ss_pred -----------HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 90 -----------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 90 -----------~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
..+...+..+|++++|+|+.++...++.+.+..+...+.|. |+++||+|+.+.++..+.+..++...+
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKAL-VIVVNKWDLVKDEKTREEFKKELRRKL 313 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEECcccCCCHHHHHHHHHHHHHhc
Confidence 22345678999999999999999999998888888889885 456899999833344455555665555
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
...+ .+|++++||++| .++.++++++..
T Consensus 314 ~~~~----~~~vi~~SA~~g----------~~v~~l~~~i~~ 341 (429)
T TIGR03594 314 PFLD----FAPIVFISALTG----------QGVDKLLDAIDE 341 (429)
T ss_pred ccCC----CCceEEEeCCCC----------CCHHHHHHHHHH
Confidence 4332 479999999998 466666666544
No 99
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=5.6e-18 Score=156.52 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=104.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
||+++|+.|+|||||+++|+...... .+ . ... ....|+......+..++..+.+||||||.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-~~-------~--~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-KG-------L--PPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-cC-------C--ccc--ccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998642210 00 0 001 112333333445566788999999999999998888
Q ss_pred HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 94 TGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
..+..+|++++|+|+.+.. .......+..+. ..++|. ++++||+|+.+.. ..+.+...++......+. ..+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~--~~~ 144 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPL-LILANKQDLPDAL-SVEEIKEVFQDKAEEIGR--RDC 144 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCE-EEEEEccccccCC-CHHHHHHHhccccccccC--Cce
Confidence 8889999999999998632 222233333222 246784 5568999987541 112222222222222222 357
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+++++||++| .++++++++|..
T Consensus 145 ~~~~~Sa~~g----------~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEG----------TGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCC----------cCHHHHHHHHhc
Confidence 8999999998 789999998853
No 100
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.8e-17 Score=177.26 Aligned_cols=160 Identities=25% Similarity=0.330 Sum_probs=119.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~-- 87 (593)
...++|+++|++|+|||||+++|++... .......|+|.+.....+..++..+.++||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~---------------~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER---------------VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc---------------eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 4579999999999999999999985321 11112447888877777778888999999999532
Q ss_pred --------hH-HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 88 --------YI-KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 88 --------~~-~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
|. ..+..++..+|++|+|+|+.++...|+...+..+...+.|.+ +++||+|+.+. +..+.+..++...+
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl~~~-~~~~~~~~~~~~~l 313 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDLVDE-KTMEEFKKELRRRL 313 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCCCH-HHHHHHHHHHHHhc
Confidence 22 334567789999999999999999999998888888898855 56899999864 33444555555555
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
... ..+|++++||++| .++.++++.+..
T Consensus 314 ~~~----~~~~i~~~SA~~~----------~gv~~l~~~i~~ 341 (435)
T PRK00093 314 PFL----DYAPIVFISALTG----------QGVDKLLEAIDE 341 (435)
T ss_pred ccc----cCCCEEEEeCCCC----------CCHHHHHHHHHH
Confidence 433 2479999999998 456666665543
No 101
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=2.2e-17 Score=169.22 Aligned_cols=176 Identities=18% Similarity=0.145 Sum_probs=118.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~-- 87 (593)
.+..+|+++|++|+|||||+++|++...... ....+.|.+.....+..++.++.||||||..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv---------------s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV---------------TPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeec---------------cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 4567999999999999999999985421110 01123444433344556778899999999632
Q ss_pred ------hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 88 ------YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 88 ------~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
+.+.....+..+|++++|+|+.++........+..+...+.|.++ ++||+|+.+. . . .++.+.+...
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~Il-ViNKiDl~~~-~-~----~~~~~~l~~~ 187 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIF-LLNKIDIESK-Y-L----NDIKAFLTEN 187 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEE-EEEhhcCccc-c-H----HHHHHHHHhc
Confidence 223333456799999999999887766666667777777888765 6799998753 1 1 1333444332
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC------CCCCCCeeEEEEEE
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN------RAIDGAFLLPVEDV 220 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~------~~~~~~~~~~i~~~ 220 (593)
. ...+++++||++| .++++|+++|...+|... ...+.|.++.+.++
T Consensus 188 ~---~~~~i~~iSAktg----------~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~ei 239 (339)
T PRK15494 188 H---PDSLLFPISALSG----------KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEI 239 (339)
T ss_pred C---CCcEEEEEeccCc----------cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 2 1367999999998 689999999998876321 12345555544443
No 102
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=2.8e-17 Score=163.84 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=104.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-----
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY----- 88 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~----- 88 (593)
+|+++|.+|+|||||+|+|++....... ...++|.+........++.++.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs---------------~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS---------------PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC---------------CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 5899999999999999999964211100 01123333222223345567999999996431
Q ss_pred ---HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 89 ---IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 89 ---~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+.+..++..+|++++|+|+++....+ ...+..+...+.|.+ +++||+|+.+.+... ..+..+.+..++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl~~~~~~~----~~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDNKFKDKLL----PLIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeCCCHHHHH----HHHHHHHhhcCC--
Confidence 233456678999999999999865443 445566667788855 568999998653322 223333333222
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.+++++||++| .++++|+++|...+|+
T Consensus 139 --~~v~~iSA~~g----------~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 139 --KDIVPISALTG----------DNTSFLAAFIEVHLPE 165 (270)
T ss_pred --CceEEEecCCC----------CCHHHHHHHHHHhCCC
Confidence 37999999998 7899999999988764
No 103
>KOG0468|consensus
Probab=99.76 E-value=1.1e-16 Score=165.49 Aligned_cols=134 Identities=29% Similarity=0.433 Sum_probs=109.9
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCC-ccccccccCCChhhhhcCceEEeeeeEE-----eeCCeEEEEE
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-EAKSYDQIDAAPEEKARGITINTAHIEY-----ETKARHYAHV 80 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~~~ii 80 (593)
..+...+||+++||-.||||+|+..|........+. ......++|.+..|++||++|......+ +...+.++|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 344567899999999999999999998765433221 1222346899999999999998765443 2345667899
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
|||||-+|..++..+++.+|++++|||+.+|+.-+|...+..+-....| ++||+||+|+.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 9999999999999999999999999999999999999999999998999 56678999964
No 104
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=5.4e-17 Score=164.58 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=120.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh-----h
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA-----D 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~-----~ 87 (593)
..|+++|.+|+|||||+|+|++...... +-..|+|-|..+...++.++.+.+|||+|.. .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV---------------~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV---------------SDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe---------------ecCCCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 5799999999999999999997533221 1134899999888899999999999999944 2
Q ss_pred hH----HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YI----KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~----~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
+. ..+..++..||++|||||+..|+.++..+....++..+.|.+ +|+||+|-...++. ..+ +-.+|+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~~~~e~~-------~~e-fyslG~ 139 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDNLKAEEL-------AYE-FYSLGF 139 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccCchhhhh-------HHH-HHhcCC
Confidence 33 334456679999999999999999999999999997778855 46799997744221 111 234455
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
-..+++||.+| .|+.+|++.+...+|
T Consensus 140 ----g~~~~ISA~Hg----------~Gi~dLld~v~~~l~ 165 (444)
T COG1160 140 ----GEPVPISAEHG----------RGIGDLLDAVLELLP 165 (444)
T ss_pred ----CCceEeehhhc----------cCHHHHHHHHHhhcC
Confidence 35899999998 799999999999886
No 105
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=8.3e-17 Score=149.24 Aligned_cols=159 Identities=23% Similarity=0.301 Sum_probs=109.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh---
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~--- 88 (593)
.++|+++|++|+|||||+++|++...... +...+.|.......+..++..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV---------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec---------------cCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 47899999999999999999985421100 012344444444456667788999999996432
Q ss_pred -------H-HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH-HHHHHHHHHHHHHHh
Q psy8869 89 -------I-KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLN 159 (593)
Q Consensus 89 -------~-~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~-~~~~~~~~~~~~~l~ 159 (593)
. ..+...+..+|++++|+|+.++...+....+..+...+.|.+ +++||+|+.+.. ...+.+.+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 233445678999999999998877766666677777787754 568999998652 233334444444333
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.. ...+++++||+++ .++.++++++.+
T Consensus 146 ~~----~~~~~~~~Sa~~~----------~~i~~~~~~l~~ 172 (174)
T cd01895 146 FL----DYAPIVFISALTG----------QGVDKLFDAIDE 172 (174)
T ss_pred cc----cCCceEEEeccCC----------CCHHHHHHHHHH
Confidence 21 2478999999997 688899888765
No 106
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=4.6e-17 Score=148.50 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=107.2
Q ss_pred EEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH-----
Q psy8869 16 GTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK----- 90 (593)
Q Consensus 16 ~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~----- 90 (593)
+++|++|+|||||+++|++.... ..+...++|.+......+.++..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 57999999999999999854110 0111235565555566667788899999999888543
Q ss_pred ---HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 91 ---NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 91 ---~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
.+...+..+|.+++|+|+.++...+..+++..+...+.|.+ +++||+|+.+.+.. ...+..++.
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECcccCChHHH--------HHHHHhcCC----
Confidence 34456778999999999998777777777788888888854 56899999876322 111222332
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+++++|++++ .++++++++|.+.
T Consensus 133 ~~~~~~Sa~~~----------~gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHG----------RGIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccC----------CCHHHHHHHHHhh
Confidence 26899999998 6899999988754
No 107
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.73 E-value=2.5e-17 Score=134.81 Aligned_cols=89 Identities=33% Similarity=0.610 Sum_probs=83.9
Q ss_pred CCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCC
Q psy8869 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV 289 (593)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i 289 (593)
++||+|+|+++|++++.|++++|+|++|.++.||+++++|.+ ..++|+||+.++.++++|.|||+|+++|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 579999999999999999999999999999999999999864 779999999999999999999999999999999999
Q ss_pred ccceEEecCCC
Q psy8869 290 ERGQVLAKPGS 300 (593)
Q Consensus 290 ~~G~vl~~~~~ 300 (593)
++|++||++++
T Consensus 80 ~~G~vl~~~~~ 90 (91)
T cd03693 80 KRGDVAGDSKN 90 (91)
T ss_pred CCcCEEccCCC
Confidence 99999998753
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.73 E-value=7.1e-17 Score=150.19 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
+...++|+++|+.|+|||||+++|++... . ..+ .|+......+..++..+.+|||||+++|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-------------~--~~~----~t~g~~~~~~~~~~~~l~l~D~~G~~~~ 71 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-------------D--TIS----PTLGFQIKTLEYEGYKLNIWDVGGQKTL 71 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-------------C--CcC----CccccceEEEEECCEEEEEEECCCCHHH
Confidence 34568999999999999999999985310 0 000 1111122233445778899999999998
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHH----HHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~----~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++.. +....+++..+ ...++| ++|++||+|+.+.. ...++.+.++....
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~ 145 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-----SEEEIREALELDKI 145 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC-----CHHHHHHHhCcccc
Confidence 887777888999999999998742 22233333222 224667 45567999987531 11234444443322
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
....++++++||++| .+++++++++.
T Consensus 146 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~ 171 (173)
T cd04154 146 SSHHWRIQPCSAVTG----------EGLLQGIDWLV 171 (173)
T ss_pred CCCceEEEeccCCCC----------cCHHHHHHHHh
Confidence 334679999999998 78999998875
No 109
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=1.3e-16 Score=147.07 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=102.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~ 88 (593)
..++|+++|+.|+|||||+++|...... .......+. +.....+..++ ..+.+|||||+++|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~--------------~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFS--------------ERQGNTIGV--DFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCc--------------ccCCCccce--EEEEEEEEECCEEEEEEEEECCChHHH
Confidence 3589999999999999999999753110 001111222 22223334444 46789999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
...+...+..+|++++|+|+++...-+ ....+..+.. .++|. +++.||+|+.+..+. ...+...+.+..+
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 139 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVL-LLIGNKCDLEEQREV---LFEEACTLAEKNG-- 139 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEECccccccccc---CHHHHHHHHHHcC--
Confidence 888888888999999999998843222 2223333333 35675 456799998754221 1123334444433
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
..+++++||++| .+++++++.+...
T Consensus 140 --~~~~~e~Sa~~~----------~~v~~~~~~l~~~ 164 (165)
T cd01864 140 --MLAVLETSAKES----------QNVEEAFLLMATE 164 (165)
T ss_pred --CcEEEEEECCCC----------CCHHHHHHHHHHh
Confidence 246899999998 6889999888653
No 110
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.7e-16 Score=170.48 Aligned_cols=160 Identities=22% Similarity=0.253 Sum_probs=112.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh-----
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----- 85 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh----- 85 (593)
..++|+++|++|+|||||+++|++.... ..+...|+|.+.....++.++..+.||||||.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~---------------~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS---------------VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 4689999999999999999999854211 01113466666655566778888999999994
Q ss_pred -----hhhHHH-HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 86 -----ADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 86 -----~~~~~~-~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+.|... ....+..+|++++|+|++++...+....+..+...++|. |+|+||+|+.+.+. ...+..++.+.+.
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~pi-IiV~NK~Dl~~~~~-~~~~~~~i~~~l~ 352 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRAL-VLAFNKWDLVDEDR-RYYLEREIDRELA 352 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECcccCChhH-HHHHHHHHHHhcc
Confidence 333222 233467899999999999998888888787777788885 45679999986422 2223334444333
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
... .+|++++||++| .+++++++.+...
T Consensus 353 ~~~----~~~~~~~SAk~g----------~gv~~lf~~i~~~ 380 (472)
T PRK03003 353 QVP----WAPRVNISAKTG----------RAVDKLVPALETA 380 (472)
T ss_pred cCC----CCCEEEEECCCC----------CCHHHHHHHHHHH
Confidence 222 368999999998 5666666666543
No 111
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.71 E-value=1.6e-16 Score=147.14 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=97.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe-EEEEEecCChh------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHA------ 86 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpGh~------ 86 (593)
+|+++|++|+|||||+++|++.....+. ..+.|.+.....+..++. .+.|+||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 6999999999999999999853211000 112333333333445555 89999999963
Q ss_pred -hhHHHHHHhhhcCCEEEEEEECCCC-CC-hhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 87 -DYIKNMITGAAQMDGAILVCSAADG-PM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 87 -~~~~~~~~~~~~~d~~ilVvda~~g-~~-~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
.+...+...+..+|++++|+|+++. .. .+....+..+.. .+.|. ++++||+|+.+.....+ .+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl~~~~~~~~----~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNKIDLLDEEELFE----LLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEchhcCCchhhHH----HHHHHH
Confidence 2344455556689999999999985 22 222222233332 25664 45689999977533222 223333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
... ...+++++||+++ .++.++++++.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~----------~gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTG----------EGLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCC----------CCHHHHHHHHHhh
Confidence 322 2467999999998 6899999988754
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=3e-16 Score=144.12 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=100.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|+.++|||||+++++...... ......+.++......+......+.+|||||+++|...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP--------------QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--------------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 589999999999999999998531100 000111222222222233334567799999999999888
Q ss_pred HHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
...+..+|++++|+|+++....+ ..+.+..+... ++|. +++.||+|+... . ..+..++.+.. .+|
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~-ivv~nK~Dl~~~-~-----~~~~~~~~~~~-----~~~ 134 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPC-IVVANKIDLDPS-V-----TQKKFNFAEKH-----NLP 134 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEECccCchh-H-----HHHHHHHHHHc-----CCe
Confidence 88899999999999998754322 23344444443 6775 556799998532 1 11222333322 368
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++||++| .+++++++.+...+
T Consensus 135 ~~~~Sa~~~----------~gv~~l~~~l~~~~ 157 (161)
T cd04124 135 LYYVSAADG----------TNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 999999998 68889998886543
No 113
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=4.8e-16 Score=145.40 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=103.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh---
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH--- 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh--- 85 (593)
+....+|+++|++|+|||||+++|++.... .......|.|.+...+.. + ..+.+|||||+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~ 77 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL--------------ARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYA 77 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc--------------ccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccc
Confidence 356789999999999999999999854200 000012245555544333 2 36899999994
Q ss_pred -------hhhHHHHHHhh---hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 86 -------ADYIKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 86 -------~~~~~~~~~~~---~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
.+|...+...+ ..+|++++|+|++++...++.+.+..+...++|. ++++||+|+.+..+. +....+++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~~~-~~~~~~i~ 155 (179)
T TIGR03598 78 KVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPV-LIVLTKADKLKKSEL-NKQLKKIK 155 (179)
T ss_pred cCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEECcccCCHHHH-HHHHHHHH
Confidence 33433332233 3568999999999988888888888888888885 556899999875433 33445677
Q ss_pred HHHhhcCCCCCCceEEEeccCccc
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~ 179 (593)
+.++..+ ...+++++||++|.
T Consensus 156 ~~l~~~~---~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 156 KALKKDA---DDPSVQLFSSLKKT 176 (179)
T ss_pred HHHhhcc---CCCceEEEECCCCC
Confidence 7776643 24689999999984
No 114
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=6.4e-16 Score=156.25 Aligned_cols=161 Identities=22% Similarity=0.214 Sum_probs=107.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh---
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD--- 87 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~--- 87 (593)
..-.|+++|.+|+|||||+++|++........ ....|.+........++.++.|+||||..+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~---------------~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP---------------KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC---------------CCCcccccEEEEEEcCCceEEEEECCCCCCchh
Confidence 45679999999999999999998542111000 011122211112233557899999999533
Q ss_pred -----hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 -----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 -----~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+...+...+..+|++++|+|++++......+.+..+...+.|.++ ++||+|+.+..+.... .+..+.+..+
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvil-VlNKiDl~~~~~~l~~---~~~~l~~~~~ 144 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVIL-VLNKIDLVKDKEELLP---LLEELSELMD 144 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEE-EEECCcCCCCHHHHHH---HHHHHHhhCC
Confidence 234445567799999999999987666667777777777788555 6899999843222222 2233333222
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
..+++++||+++ .++++|+++|...+|+
T Consensus 145 ----~~~i~~iSA~~~----------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 ----FAEIVPISALKG----------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ----CCeEEEecCCCC----------CCHHHHHHHHHHhCCC
Confidence 467999999998 6899999999888763
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=2.5e-16 Score=144.60 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=99.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|..++|||||+++|+....... .. ..|+......+...+..+.+|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------------~~----~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------------II----VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------------ee----cCccccceEEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999985311000 00 0111112223445677899999999999998888
Q ss_pred HhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 94 TGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
..+..+|++++|+|+++... ......+..+.. .++|.+ +++||+|+.+... .+ ++.+.+........
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~ 137 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL-FFANKMDLPDALT-AV----KITQLLGLENIKDK 137 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE-EEEeCccccCCCC-HH----HHHHHhCCccccCc
Confidence 88899999999999987432 222233332221 367754 4679999876421 11 22222221111112
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
..+++++||++| .++++++++|.+
T Consensus 138 ~~~~~~~Sa~~g----------~gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTG----------EGLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCC----------CchHHHHHHHhc
Confidence 457899999998 789999998853
No 116
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=3.5e-16 Score=143.85 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=105.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.++|+++|+.++|||||+++|++..... ......|.+.......+......+.+||+||+++|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~ 66 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 3789999999999999999998542111 01112233333334444444566789999999999888
Q ss_pred HHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
....++.+|++++|+|+++.. ..+....+..+... ++| +++++||+|+.+.... -..+...+.... .
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 137 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV---STEEAQEYADEN-----G 137 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC---CHHHHHHHHHHc-----C
Confidence 877888999999999998632 23334444444444 355 5556899998743110 011233344433 2
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++.+++++|.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFFETSAKTG----------ENVNELFTEIAKKL 162 (163)
T ss_pred CEEEEEECCCC----------CCHHHHHHHHHHHh
Confidence 67999999998 68999999987765
No 117
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.70 E-value=3.4e-16 Score=144.76 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=102.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|+.++|||||+++|...... . .....|.++ ..+......+.+|||||+++|.
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~------------~---~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV------------T---TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc------------c---ccCCcccce----EEEEECCEEEEEEECCCCHHHH
Confidence 45689999999999999999999742110 0 001112222 2334467789999999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHH-H---HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~-~---~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...++.+|++++|+|+++.. +....+.+... . ..++| ++++.||+|+.+.. . ..++.+.++.....
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~----~~~i~~~~~~~~~~ 141 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAM-K----PHEIQEKLGLTRIR 141 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCC-C----HHHHHHHcCCCccC
Confidence 88888889999999999998732 23333333222 2 13567 55567999987431 1 12333433322222
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
....+++++||++| .++.+++++|.+
T Consensus 142 ~~~~~~~~~SAk~g----------~gv~~~~~~l~~ 167 (168)
T cd04149 142 DRNWYVQPSCATSG----------DGLYEGLTWLSS 167 (168)
T ss_pred CCcEEEEEeeCCCC----------CChHHHHHHHhc
Confidence 22457899999998 689999998854
No 118
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=5.8e-16 Score=165.44 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=117.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh--------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH-------- 85 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh-------- 85 (593)
+|+++|++|+|||||+++|++..... .+...|+|.+......++++..+.+|||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~---------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI---------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce---------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 48999999999999999998542111 0112467777766777788889999999996
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
+.+...+..++..+|++++|+|+.++......+.+..++..+.|.+ +++||+|+.+.+.. ..+ +..+++
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~~~~~~~-------~~~-~~~lg~-- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDGKKEDAV-------AAE-FYSLGF-- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccCCccccc-------HHH-HHhcCC--
Confidence 5566667777889999999999999998888888888888898855 56899998764321 111 123333
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.+++++||.+| .++.++++.+...++.
T Consensus 135 --~~~~~vSa~~g----------~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 135 --GEPIPISAEHG----------RGIGDLLDAILELLPE 161 (429)
T ss_pred --CCeEEEeCCcC----------CChHHHHHHHHHhcCc
Confidence 36899999998 6899999999887764
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=3.9e-16 Score=142.90 Aligned_cols=152 Identities=21% Similarity=0.131 Sum_probs=98.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|+.++|||||+++|...... .. ..|+......++..+..+.+|||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV------------TT-------IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc------------Cc-------CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 5899999999999999999642110 00 0121112223445677899999999999988888
Q ss_pred HhhhcCCEEEEEEECCCCCC-hhhHHHHHH-HHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 94 TGAAQMDGAILVCSAADGPM-PQTREHILL-ARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~-~qt~e~l~~-~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
..+..+|++++|+|+++... ....+.+.. +.. .+.|.+ +++||+|+.+... .. ++...+..........
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL-VFANKQDMPGALS-EA----EISEKLGLSELKDRTW 135 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE-EEEeCCCCCCCCC-HH----HHHHHhCccccCCCcE
Confidence 88899999999999987321 222333322 221 366754 5679999875421 11 1222222111222346
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+++++||++| .++.+++++|.+
T Consensus 136 ~~~~~Sa~~~----------~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKG----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCC----------CCHHHHHHHHhc
Confidence 8999999998 789999998753
No 120
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.69 E-value=4.8e-16 Score=143.40 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=101.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..|+|||||+++|++...... .....|.+..............+.+|||||+++|...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--------------FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 6899999999999999999985321000 00011222222222222223567899999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
...++.+|++++|+|.++.. +.+..+.+..+... +.| ++|+.||+|+.+..... ..+..++.+.+ ..
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS---SERGRQLADQL-----GF 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHc-----CC
Confidence 88889999999999998632 22233333333332 345 66678999997542211 11223333333 35
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+++++||++| .|+.++++.|...+
T Consensus 139 ~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (165)
T cd01865 139 EFFEASAKEN----------INVKQVFERLVDII 162 (165)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 7999999998 68999999987654
No 121
>KOG0092|consensus
Probab=99.69 E-value=2.7e-16 Score=140.30 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=118.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|..++|||||+-++...... ..+|..-|...-+...........+.||||+|+++|-
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~--------------e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFH--------------ENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccc--------------cccccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 46789999999999999999998753211 1123333333333333333334667799999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEE--EEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVV--FLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiV--vvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.....++++|+++|+|.|.++ ..+.+.+..+..+....-|.+++ +-||+|+.+..+. -.++...+.+..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V---~~~ea~~yAe~~----- 140 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV---EFEEAQAYAESQ----- 140 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc---cHHHHHHHHHhc-----
Confidence 988889999999999999998 45566677777777766576655 4599999873111 112445555553
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~ 206 (593)
..+++.+||++| .++++++..|.+.+|...
T Consensus 141 gll~~ETSAKTg----------~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 141 GLLFFETSAKTG----------ENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CCEEEEEecccc----------cCHHHHHHHHHHhccCcc
Confidence 467999999998 689999999999887543
No 122
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.69 E-value=2.4e-16 Score=126.82 Aligned_cols=83 Identities=33% Similarity=0.555 Sum_probs=78.6
Q ss_pred CeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCcc
Q psy8869 212 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291 (593)
Q Consensus 212 ~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~ 291 (593)
||+|+|+++|+++ .|++++|+|++|++++||++.+.|.+ ..++|++|+.++.++++|.|||+++++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7999999999999 99999999999999999999999865 67999999999999999999999999999998889999
Q ss_pred ceEEec
Q psy8869 292 GQVLAK 297 (593)
Q Consensus 292 G~vl~~ 297 (593)
|++|++
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999984
No 123
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=6.6e-16 Score=142.12 Aligned_cols=156 Identities=21% Similarity=0.179 Sum_probs=99.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCce-EEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGIT-INTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t-~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
|.++|+++|.+|+|||||++++++..... +...... .......+......+.+|||||+++|.
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 64 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVT----------------DYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS 64 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCc----------------ccCCCccceEEEEEEECCEEEEEEEEECCCCcchh
Confidence 45899999999999999999998542100 0000000 001111122223467799999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+..... ..+..++++..
T Consensus 65 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~Dl~~~~~~~---~~~~~~~~~~~--- 137 (164)
T cd04145 65 AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM-ILVGNKADLEHQRKVS---REEGQELARKL--- 137 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE-EEEeeCccccccceec---HHHHHHHHHHc---
Confidence 888888899999999999987332 112222222222 36774 4567999987542111 11234444433
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++++||++| .++.++++.|...
T Consensus 138 --~~~~~~~Sa~~~----------~~i~~l~~~l~~~ 162 (164)
T cd04145 138 --KIPYIETSAKDR----------LNVDKAFHDLVRV 162 (164)
T ss_pred --CCcEEEeeCCCC----------CCHHHHHHHHHHh
Confidence 357999999998 6899999988754
No 124
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.69 E-value=4.9e-16 Score=142.35 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=99.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|+.++|||||+.+|..... ..+ ....|..+ ..++.....+.+||+||+.+|...+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-------~~~--------~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-------VTT--------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------ccc--------CCCCCcce----EEEEECCEEEEEEECCCCHhHHHHH
Confidence 4799999999999999999963211 000 00112211 2234567789999999999999888
Q ss_pred HHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...++.+|++++|+|+++.. +.+..+.+..+.. .+.| ++++.||+|+.+... .+ ++...+.........
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~ 135 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AA----EVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCccccCCCC
Confidence 88889999999999998632 2333443433322 2456 566789999865311 11 222222211122235
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+.++++||++| .|+++++++|.+
T Consensus 136 ~~~~~~Sak~g----------~gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSG----------DGLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCC----------CCHHHHHHHHhc
Confidence 67889999998 789999998854
No 125
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=6.4e-16 Score=143.03 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=101.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
+..++|+++|+.|+|||||+++|+........ ...++.+.....+...+ ..+.+||+||+.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ----------------GATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 56799999999999999999999853211100 11122222222333444 4577899999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+.++...+ ....+..+.. .++|.++ +.||+|+.+..+...... +.+.+..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~-v~NK~D~~~~~~i~~~~~---~~~~~~~-- 142 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITIL-VGNKIDLAERREVSQQRA---EEFSDAQ-- 142 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE-EEECcccccccccCHHHH---HHHHHHc--
Confidence 9988888889999999999998743221 1222222222 3567554 579999875432222222 2222211
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
..+++++||++| .++.++++.+...
T Consensus 143 ---~~~~~~~Sa~~~----------~gv~~l~~~i~~~ 167 (169)
T cd04114 143 ---DMYYLETSAKES----------DNVEKLFLDLACR 167 (169)
T ss_pred ---CCeEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 367999999998 6899999988753
No 126
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.68 E-value=9.7e-16 Score=140.73 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=99.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeee--eEEe--eCCeEEEEEecCChhhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH--IEYE--TKARHYAHVDCPGHADY 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~--~~~~~~~iiDtpGh~~~ 88 (593)
++|+++|..++|||||+++|++..... +....++.+... ..+. .....+.+|||||+++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK----------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 479999999999999999998532110 011122222222 2222 23456889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhH-HHHHHHH--HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTR-EHILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~-e~l~~~~--~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
...+...++.+|++++|+|+++...-+.. ..+..+. ..++|.+ ++.||+|+.+..... ..+...+.+.+
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~v~---~~~~~~~~~~~---- 136 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMV-LVQTKIDLLDQAVIT---NEEAEALAKRL---- 136 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhcccccCCC---HHHHHHHHHHc----
Confidence 98888888999999999999873322221 1222222 2367854 567999987532211 12333444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+|++++||++| .++++++++|..
T Consensus 137 -~~~~~~~Sa~~~----------~~v~~l~~~l~~ 160 (162)
T cd04106 137 -QLPLFRTSVKDD----------FNVTELFEYLAE 160 (162)
T ss_pred -CCeEEEEECCCC----------CCHHHHHHHHHH
Confidence 358999999997 688999988864
No 127
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.68 E-value=2.2e-16 Score=127.97 Aligned_cols=85 Identities=26% Similarity=0.437 Sum_probs=79.7
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecC--CceEEEEEEEEecceecceeeecceEEEEeccCCccCCc
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK--DTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~--~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~ 290 (593)
|+|+|+++|++++.|+|++|+|++|.+++||++.++|.. .+..++|++|+.++.++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999999999999999999999999999999974 237899999999999999999999999999999999999
Q ss_pred cceEEec
Q psy8869 291 RGQVLAK 297 (593)
Q Consensus 291 ~G~vl~~ 297 (593)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 128
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=7.7e-16 Score=144.08 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=103.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
+..++|+++|..++|||||+.+|.... +. . . ..|+......++.++..+.+||+||+++|.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~-------~~-----~---~----~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV-----T---T----IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC-------Cc-----c---c----cCCcceeEEEEEECCEEEEEEECCCCHHHH
Confidence 456899999999999999999986321 00 0 0 111112222345567889999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++|+|+|+++.. ....++.+..... .++| ++|+.||+|+.+... . .++.+.+....+.
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~l~l~~~~ 149 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR 149 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCC-H----HHHHHHhCccccC
Confidence 98888899999999999998732 2222222222211 2456 555679999876421 1 1233333221222
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...+.++++||++| .|+.+++++|...+
T Consensus 150 ~~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 150 QRHWYIQSTCATSG----------EGLYEGLDWLSNNI 177 (181)
T ss_pred CCceEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 23446779999998 78999999987654
No 129
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=1.8e-15 Score=144.29 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=102.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (593)
+....+|+++|.+|+|||||+++|++... ..+...|+|.+..... .. .+.+|||||
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~ 65 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFM 65 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceEEe--ec--ceEEEeCCccccc
Confidence 34568999999999999999999975311 0111335665544332 22 589999999
Q ss_pred -------hhhhHHHHHH----hhhcCCEEEEEEECCCC-----------CChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 85 -------HADYIKNMIT----GAAQMDGAILVCSAADG-----------PMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 85 -------h~~~~~~~~~----~~~~~d~~ilVvda~~g-----------~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.++|...+.. ++..+|++++|+|+... ...++.+.+..+...++|.++ ++||+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ii-v~NK~Dl~~ 144 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIV-AVNKMDKIK 144 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEE-EEECccccC
Confidence 4555544333 34467899999999652 123456666777778899655 679999976
Q ss_pred HHHHHHHHHHHHHHHHhhcCC----CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 143 DEELLELVEIEIRELLNKYEF----PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
.. +. ...++.+.++. ..+..+++++||++| ++++++++|...++..
T Consensus 145 ~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 145 NR---DE---VLDEIAERLGLYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEA 194 (201)
T ss_pred cH---HH---HHHHHHHHhcCCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCc
Confidence 53 11 12222233332 112247999999984 6889999998876543
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=9.8e-16 Score=141.63 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=96.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------ 87 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~------ 87 (593)
+|+++|++|+|||||+++|++..... +...+.|.+.....+..++..+.||||||+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV----------------APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER 65 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc----------------CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC
Confidence 79999999999999999998542110 00123344444444555678899999999732
Q ss_pred -hH-HHHHHh-hhcCCEEEEEEECCCCCC---hhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 88 -YI-KNMITG-AAQMDGAILVCSAADGPM---PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 88 -~~-~~~~~~-~~~~d~~ilVvda~~g~~---~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+. ...... ...+|++++|+|+++... ....+.+..+... ++| +|+++||+|+.+.....+ ..++.+
T Consensus 66 ~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~-----~~~~~~ 139 (168)
T cd01897 66 NTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFEDLSE-----IEEEEE 139 (168)
T ss_pred chHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhhHHH-----HHHhhh
Confidence 11 111222 234699999999987432 2222334444443 667 556789999986533221 222222
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
. ...+++++||++| .+++++++++.+.+
T Consensus 140 ~-----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (168)
T cd01897 140 L-----EGEEVLKISTLTE----------EGVDEVKNKACELL 167 (168)
T ss_pred h-----ccCceEEEEeccc----------CCHHHHHHHHHHHh
Confidence 1 2468999999998 78999999987643
No 131
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.5e-15 Score=136.92 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=113.0
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC---
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG--- 84 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG--- 84 (593)
++.....|+++|.+|+|||||+|+|++...- .......|.|..+.++.+... +.|+|.||
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L--------------ArtSktPGrTq~iNff~~~~~---~~lVDlPGYGy 82 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNL--------------ARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGY 82 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcce--------------eecCCCCCccceeEEEEecCc---EEEEeCCCccc
Confidence 3446679999999999999999999974210 111224588887777655432 78999999
Q ss_pred -------hhhhHHHHHHhh---hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHH
Q psy8869 85 -------HADYIKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI 154 (593)
Q Consensus 85 -------h~~~~~~~~~~~---~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~ 154 (593)
.+++......++ .+...+++++|+.++.....++.+.++...++|.++ ++||+|.+...+..+.+. .+
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~v-v~tK~DKi~~~~~~k~l~-~v 160 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIV-VLTKADKLKKSERNKQLN-KV 160 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE-EEEccccCChhHHHHHHH-HH
Confidence 233333333333 356889999999999999999999999999999666 579999998644433222 33
Q ss_pred HHHHhhcCCCC-CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 155 RELLNKYEFPG-NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 155 ~~~l~~~~~~~-~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+ .+.... +..-++..|+.++ .|+++|.+.|.+.+.
T Consensus 161 ~~---~l~~~~~~~~~~~~~ss~~k----------~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 161 AE---ELKKPPPDDQWVVLFSSLKK----------KGIDELKAKILEWLK 197 (200)
T ss_pred HH---HhcCCCCccceEEEEecccc----------cCHHHHHHHHHHHhh
Confidence 32 222221 1212777777776 578999998887653
No 132
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=7.8e-16 Score=141.26 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=101.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee--eeEEeeCCeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+||+++|+.++|||||+++|++..... +.....+.+.. ...++.....+.+||+|||++|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE----------------DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH
Confidence 589999999999999999998542111 00111222222 222332335678999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.....+..+|++++|+|+++....+. .+.+..+.. .++| ++++.||+|+.+.... ...+...+.+..
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~----- 135 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREV---TFLEASRFAQEN----- 135 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC---CHHHHHHHHHHc-----
Confidence 88888899999999999998543222 233333332 3667 5556799998753211 112334444433
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.++++.+||+++ .++.++++++.+
T Consensus 136 ~~~~~~~Sa~~~----------~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFLETSALTG----------ENVEEAFLKCAR 159 (161)
T ss_pred CCEEEEEECCCC----------CCHHHHHHHHHH
Confidence 367999999998 789999998865
No 133
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=7.6e-16 Score=140.64 Aligned_cols=141 Identities=26% Similarity=0.349 Sum_probs=96.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh----hhhH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----ADYI 89 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh----~~~~ 89 (593)
+|+++|++|+|||||+++|.+... .. ..|... .+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~------------~~--------~~~~~v---~~~~~----~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT------------LA--------RKTQAV---EFNDK----GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc------------cC--------ccceEE---EECCC----CcccCCccccCCHHHH
Confidence 699999999999999999874210 00 111111 12111 26999994 5677
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
..+..++..+|++++|+|++++...+..+.+.. ..+.| +++++||+|+.+.+ . ..+.++++..++ ..|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--~----~~~~~~~~~~~~---~~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD--V----AATRKLLLETGF---EEP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc--H----HHHHHHHHHcCC---CCC
Confidence 778888899999999999998654444332221 23566 55678999986532 1 234455555554 369
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++++||++| .++++|++++.+.++
T Consensus 124 ~~~~Sa~~g----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDP----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCc----------cCHHHHHHHHHHhch
Confidence 999999998 789999999987654
No 134
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.67 E-value=1.3e-15 Score=141.38 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=99.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
++|+++|++|+|||||+++|++..... +.....+.+.....+..++ ..+.+||+||++.|..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh
Confidence 489999999999999999998542110 0011111122222233343 3466999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHH--HHHHHc------CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHI--LLARQV------GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l--~~~~~l------~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
.....++.+|++|+|+|+.+...-+....+ .+...+ ++|. ++++||+|+.++... ...++..+++..+
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 140 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDLEEKRQV---STKKAQQWCQSNG 140 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECccccccccc---CHHHHHHHHHHcC
Confidence 888888999999999999874321111111 112222 5674 556799999842111 1123344444433
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+++++|+++| .++.++++++.+.+
T Consensus 141 ----~~~~~~~Sa~~~----------~gv~~l~~~i~~~~ 166 (172)
T cd01862 141 ----NIPYFETSAKEA----------INVEQAFETIARKA 166 (172)
T ss_pred ----CceEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68889998887643
No 135
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.67 E-value=2.2e-16 Score=128.16 Aligned_cols=87 Identities=72% Similarity=1.224 Sum_probs=80.9
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccc
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G 292 (593)
|+|+|+++|++++.|++++|+|++|++++||++.+.|.+.+..++|+||+.++.++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986445678999999999999999999999999999988999999
Q ss_pred eEEecCC
Q psy8869 293 QVLAKPG 299 (593)
Q Consensus 293 ~vl~~~~ 299 (593)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999763
No 136
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.67 E-value=1.1e-15 Score=140.96 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=101.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.++|+++|..|+|||||+++|+...... ......+.+.......+......+.+||+||+++|...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE--------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 67 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 4799999999999999999997431100 00001122222222333323346789999999999888
Q ss_pred HHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
....+..+|++++|+|+++.. +.+..+.+..+.. -++|. +++.||+|+....... ..+...+.+.. .
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~-iiv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 138 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDLTDKRVVD---YSEAQEFADEL-----G 138 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEEChhcccccCCC---HHHHHHHHHHc-----C
Confidence 878888999999999998732 2223333333333 24664 5567999986542110 11233344432 4
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+|++++||++| .+++++++.+.+.+
T Consensus 139 ~~~~~~Sa~~~----------~~v~~~~~~i~~~~ 163 (166)
T cd01869 139 IPFLETSAKNA----------TNVEQAFMTMAREI 163 (166)
T ss_pred CeEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 68999999998 68899998887643
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=1.1e-15 Score=142.19 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=101.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|+.++|||||+++|+..... . ...|+......+..+...+.+||+||+.+|..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVV------------H-------TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC------------C-------cCCccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 4689999999999999999999743110 0 01222222334555678899999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHH-HHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~-~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|+++... ....+.+. ++.. .++| +++++||+|+.+... .+ ++.+.+.......
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PA----EISESLGLTSIRD 148 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCcccccC
Confidence 88888899999999999987432 22222222 2222 2467 455679999875311 11 1222221111112
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
..++++++||++| .++++++++|.+
T Consensus 149 ~~~~~~~~SA~~g----------~gi~e~~~~l~~ 173 (174)
T cd04153 149 HTWHIQGCCALTG----------EGLPEGLDWIAS 173 (174)
T ss_pred CceEEEecccCCC----------CCHHHHHHHHhc
Confidence 3568999999998 689999998853
No 138
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=2.3e-15 Score=138.12 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=102.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
++|+++|++++|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||+.+|..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD----------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 47999999999999999999854211 11122344444333343443 4578999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHH-HcC--CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLAR-QVG--VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~-~l~--ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.+...+..+|++++|+|+++... .+....+.... ..+ +| +++++||+|+.+.... ...+...+.+..
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~---~~~~~~~~~~~~----- 135 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQV---STEEGEKKAKEL----- 135 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCcc---CHHHHHHHHHHh-----
Confidence 88888899999999999987432 22233333322 233 66 5556899999543211 111223333332
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++++||+++ .+++++++++.+.
T Consensus 136 ~~~~~~~Sa~~~----------~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIETSAKAG----------HNVKELFRKIASA 160 (161)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHh
Confidence 367999999998 6899999988763
No 139
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=1.1e-15 Score=140.64 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=101.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
++|+++|++|+|||||+++|+..... ......++.+.....+..++ ..+.+||+||+.+|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 58999999999999999999843210 01111223333333344444 5678999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHH-HHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTRE-HILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e-~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.....+..+|++++|+|+++....+... .+..+.. .++| +++++||+|+....+.. .+...++.+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~---~~~~~~~~~~~----- 135 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVS---REEAEAFAEEH----- 135 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCC---HHHHHHHHHHc-----
Confidence 8888889999999999998743322222 2222222 3567 55567999987532111 11233344433
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++|+.+| .+++++++.|.+.+
T Consensus 136 ~~~~~e~Sa~~~----------~~i~~l~~~i~~~~ 161 (164)
T smart00175 136 GLPFFETSAKTN----------TNVEEAFEELAREI 161 (164)
T ss_pred CCeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 357999999997 68999999987754
No 140
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=7.5e-16 Score=140.92 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=101.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|+.|+|||||++++++..... ...|.......++.....+.+||+||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-------------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-------------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998542100 01122222233445677899999999999988877
Q ss_pred HhhhcCCEEEEEEECCCC-CChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 94 TGAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
..+..+|++++|+|+++. ......+++..+.. .+.|. +++.||+|+.... ..+ ++.+.+..........
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~~~-~~~----~~~~~~~~~~~~~~~~ 135 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPL-LIFANKQDLPGAL-SVS----ELIEKLGLEKILGRRW 135 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEeeccCCcccc-CHH----HHHHhhChhhccCCcE
Confidence 778899999999999974 22333444433222 36674 4567999998642 112 2222222221222467
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+++++||++| .|+++++++|..
T Consensus 136 ~~~~~Sa~~~----------~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTG----------DGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCC----------CCHHHHHHHHhh
Confidence 9999999998 688999888754
No 141
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1.9e-15 Score=144.08 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=100.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe-eCCeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-TKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~~~iiDtpGh~~~~~~ 91 (593)
++|+++|..++|||||+++|++..... . .....|.........+. .....+.+|||||+++|...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~------------~--~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~ 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ------------H--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC------------C--CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh
Confidence 589999999999999999998532100 0 00111111112222332 23456789999999999888
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHH-------HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLAR-------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~-------~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
+...+..+|++++|+|.++... ....+.+..+. ..++|. +++.||+|+.+.... ...++.++++..++
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pi-ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~ 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPC-LLLANKCDLKKRLAK---DGEQMDQFCKENGF 142 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcE-EEEEECCCccccccc---CHHHHHHHHHHcCC
Confidence 8888899999999999987322 11111222221 135675 556799999742111 12244555555442
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++++||++| .++++++++|.+.+
T Consensus 143 ----~~~~e~Sak~~----------~~v~e~f~~l~~~l 167 (201)
T cd04107 143 ----IGWFETSAKEG----------INIEEAMRFLVKNI 167 (201)
T ss_pred ----ceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 67888888877654
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.66 E-value=7.5e-16 Score=140.09 Aligned_cols=150 Identities=25% Similarity=0.251 Sum_probs=97.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
++|+++|++|+|||||+++|+... ...+...+++.+.....+..++ ..+.+||+||+.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 789999999999999999998542 1222233556665554455566 6788999999999965
Q ss_pred HHHHhhhcCCEEEEEEECCC-------CCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 91 NMITGAAQMDGAILVCSAAD-------GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~-------g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
........++.++.++|... +...........+.. ++| ++|++||+|+.... ...+....++..+
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLN- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhcc-
Confidence 55544555555555555443 222333333333322 677 55578999998753 2233444444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
..+++++||.+| .++.+++++|.
T Consensus 138 ---~~~~~~~sa~~~----------~gv~~~~~~l~ 160 (161)
T TIGR00231 138 ---GEPIIPLSAETG----------KNIDSAFKIVE 160 (161)
T ss_pred ---CCceEEeecCCC----------CCHHHHHHHhh
Confidence 357999999998 68888888764
No 143
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=1.4e-15 Score=138.60 Aligned_cols=145 Identities=25% Similarity=0.270 Sum_probs=100.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH--
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK-- 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~-- 90 (593)
++|+++|++|+|||||+++|++...... ....+.|.+.....+..++..+.+|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV---------------SDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec---------------cCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 5899999999999999999985321100 00235555555556666778899999999766532
Q ss_pred ------HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHH-HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 91 ------NMITGAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 91 ------~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~-~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
.+...+..+|++++|+|+++..... ...... ..+.| +++++||+|+.+.... . .
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~---~~~~~~~~~~~~-vi~v~nK~D~~~~~~~-----------~----~ 127 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEE---DLEILELPADKP-IIVVLNKSDLLPDSEL-----------L----S 127 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHH---HHHHHHhhcCCC-EEEEEEchhcCCcccc-----------c----c
Confidence 2344567899999999999744333 333333 34566 5567899999875321 0 1
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.....+++++||+++ .++.+|+++|...
T Consensus 128 ~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 155 (157)
T cd04164 128 LLAGKPIIAISAKTG----------EGLDELKEALLEL 155 (157)
T ss_pred ccCCCceEEEECCCC----------CCHHHHHHHHHHh
Confidence 113578999999997 6899999988764
No 144
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.66 E-value=1.7e-15 Score=141.13 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
+..++|+++|..++|||||+.+|.... +. + . . .|+......++.+...+.+|||||+.+|.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~-------~~-----~---~--~--~t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGE-------SV-----T---T--I--PTIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC-------CC-----C---c--C--CccccceEEEEECCEEEEEEECCCChhhH
Confidence 346999999999999999999996321 10 0 0 0 12222222334567789999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++|+|+|+++.. .....+.+..+.. .++| ++|+.||+|+.+... .+ ++.+.+......
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 145 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AA----EITEKLGLHSIR 145 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCC-HH----HHHHHhCccccC
Confidence 88888889999999999998632 3344455443322 2456 555689999875311 11 222222211112
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...+.++++||++| .++.+++++|...+
T Consensus 146 ~~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 173 (175)
T smart00177 146 DRNWYIQPTCATSG----------DGLYEGLTWLSNNL 173 (175)
T ss_pred CCcEEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 23456789999998 68999999987643
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=3.1e-15 Score=160.73 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=113.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh----
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA---- 86 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~---- 86 (593)
...+|+++|.+|+|||||+++|++.... ..+...|+|.+......+.++..+.+|||||++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~---------------~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA---------------VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc---------------cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch
Confidence 4468999999999999999999853211 011244777777777777888899999999975
Q ss_pred ----hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 87 ----DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 87 ----~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
.+...+..++..+|++|+|+|++++......+.+..+...++|.+ +|+||+|+...+. +..++. .++
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl~~~~~-------~~~~~~-~~g 172 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDDERGEA-------DAAALW-SLG 172 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCCccch-------hhHHHH-hcC
Confidence 344455567789999999999999877666666777777788855 5679999865321 111111 233
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+. . .+++||++| .++.+|+++|...++.
T Consensus 173 ~~---~-~~~iSA~~g----------~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG---E-PHPVSALHG----------RGVGDLLDAVLAALPE 200 (472)
T ss_pred CC---C-eEEEEcCCC----------CCcHHHHHHHHhhccc
Confidence 32 2 469999998 6899999999887654
No 146
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.66 E-value=1.3e-15 Score=139.95 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=97.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+|+|||||++++........ .... .+ ........++.....+.||||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t-----~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---------YDPT-----IE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc---------cCCc-----hh-hhEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 6899999999999999999984311000 0000 00 0001112222223456789999999998887
Q ss_pred HHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...++.+|++++|+|.++.. +......+..+.. .++| ++++.||+|+.+...... .+...+.+.+ .
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~-----~ 137 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVSR---EEGQALARQW-----G 137 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceecH---HHHHHHHHHc-----C
Confidence 77888999999999998732 1222222233322 2577 455679999875322111 1223333332 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.|++++||++| .++.++++++.+.
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~ 161 (163)
T cd04136 138 CPFYETSAKSK----------INVDEVFADLVRQ 161 (163)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHh
Confidence 68999999998 6899999988754
No 147
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.66 E-value=5.6e-15 Score=140.33 Aligned_cols=161 Identities=21% Similarity=0.233 Sum_probs=108.1
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh---
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH--- 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh--- 85 (593)
+....+|+++|++|+|||||+++|++.... .......|.|........ +..+.||||||+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNL--------------ARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc--------------ccccCCCCceeEEEEEec---CCeEEEeCCCCCCCc
Confidence 345689999999999999999999853100 001112345555444332 367999999994
Q ss_pred -------hhhHHHHHHhhh---cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 86 -------ADYIKNMITGAA---QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 86 -------~~~~~~~~~~~~---~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
++|.......+. .++++++|+|+..+......+.+..+...++|.+ +++||+|+.+..+. +.....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~i-iv~nK~Dl~~~~~~-~~~~~~i~ 161 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVL-IVLTKADKLKKGER-KKQLKKVR 161 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEE-EEEECcccCCHHHH-HHHHHHHH
Confidence 344333333333 4578889999988766665566667777888854 46799999875332 33333455
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+... ..+++++||+++ .++.++++.|..++.
T Consensus 162 ~~l~~~-----~~~~~~~Sa~~~----------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 162 KALKFG-----DDEVILFSSLKK----------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHhc-----CCceEEEEcCCC----------CCHHHHHHHHHHHhc
Confidence 555432 367999999998 689999999887654
No 148
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=1.7e-15 Score=140.14 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=103.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..++|+++|++|+|||||+++|+...... ......|.+.......+......+.+||+||+++|..
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 68 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 34899999999999999999997532100 0011223333333333333345688999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.....+..+|++++|+|+++...-+ ...++..+.. .++| ++|+.||+|+.+.... ...+.+.+++..
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~---~~~~~~~~~~~~----- 139 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV---SYEEGEAFAKEH----- 139 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHc-----
Confidence 8888888999999999998633222 2223333333 2566 4556799998743211 112333444443
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+++++||+++ .+++++++.+.+.+
T Consensus 140 ~~~~~e~Sa~~~----------~~i~~~~~~~~~~~ 165 (168)
T cd01866 140 GLIFMETSAKTA----------SNVEEAFINTAKEI 165 (168)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 367999999998 68889888876543
No 149
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=1.7e-15 Score=145.89 Aligned_cols=166 Identities=16% Similarity=0.091 Sum_probs=105.1
Q ss_pred CcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEE
Q psy8869 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAH 79 (593)
Q Consensus 2 ~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~i 79 (593)
+.+.....+..++|+++|+.++|||||+.+|++.... .+....+..+.....+..+ ...+.|
T Consensus 2 ~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~----------------~~~~~t~g~~~~~~~v~~~~~~~~l~l 65 (216)
T PLN03110 2 AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFC----------------LESKSTIGVEFATRTLQVEGKTVKAQI 65 (216)
T ss_pred CCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeEEEEEEEEEECCEEEEEEE
Confidence 3333333456789999999999999999999753110 0111122223322233333 346789
Q ss_pred EecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 80 iDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
|||||+++|.......+..+|++++|+|.++... ......+..+.. .++|. +++.||+|+.......+. +..
T Consensus 66 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-iiv~nK~Dl~~~~~~~~~---~~~ 141 (216)
T PLN03110 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI-MMAGNKSDLNHLRSVAEE---DGQ 141 (216)
T ss_pred EECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeE-EEEEEChhcccccCCCHH---HHH
Confidence 9999999998888888889999999999987332 222223333333 25674 456799998653211111 122
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+.... .++++++||++| .+++++++.|...+
T Consensus 142 ~l~~~~-----~~~~~e~SA~~g----------~~v~~lf~~l~~~i 173 (216)
T PLN03110 142 ALAEKE-----GLSFLETSALEA----------TNVEKAFQTILLEI 173 (216)
T ss_pred HHHHHc-----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 222222 478999999998 67888888876654
No 150
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=7.9e-16 Score=140.60 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=99.9
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH-----
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN----- 91 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~----- 91 (593)
++|++|+|||||+++|++..... ....++|.+.....++.++..+.+|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV----------------GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc----------------cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 58999999999999997542110 112366776666667777788999999998876531
Q ss_pred -HHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 92 -MITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 92 -~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
+...+ ..+|++++|+|+.+.. +....+..+...++|.++ ++||+|+.+...... ....+.+.+ +.
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~ii-v~NK~Dl~~~~~~~~----~~~~~~~~~-----~~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLPVVV-ALNMIDEAEKRGIKI----DLDKLSELL-----GV 132 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCCEEE-EEehhhhcccccchh----hHHHHHHhh-----CC
Confidence 22233 4899999999998732 223334455667888555 679999976532211 222333332 35
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+++++||.++ .++.++++.|...
T Consensus 133 ~~~~iSa~~~----------~~~~~l~~~l~~~ 155 (158)
T cd01879 133 PVVPTSARKG----------EGIDELKDAIAEL 155 (158)
T ss_pred CeEEEEccCC----------CCHHHHHHHHHHH
Confidence 7999999998 6888999888764
No 151
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=1.3e-15 Score=140.31 Aligned_cols=156 Identities=20% Similarity=0.168 Sum_probs=97.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|++|+|||||+++|.+...... .+... + +.......+......+.+|||||+++|....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~---------~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDD---------YDPTI-----E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc---------cCCch-----h-hhEEEEEEECCEEEEEEEEECCCcccchHHH
Confidence 4899999999999999999985421100 00000 0 0001112222233567799999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...+..+|++++|+|+++... .........+.. .++| ++++.||+|+.+..... ..+...+.+.. .
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 136 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS---TEEGKELARQW-----G 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc---HHHHHHHHHHc-----C
Confidence 888889999999999987322 111221222221 2567 45567999987531111 11223333332 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++++||++| .++++++++|...+
T Consensus 137 ~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 161 (164)
T smart00173 137 CPFLETSAKER----------VNVDEAFYDLVREI 161 (164)
T ss_pred CEEEEeecCCC----------CCHHHHHHHHHHHH
Confidence 68999999998 68999999987654
No 152
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.66 E-value=1.2e-14 Score=140.49 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=123.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+...|+++|++|+|||||++.|....... ......|. +.+ ....+..++++||||+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--------------~~~~~~g~-i~i----~~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--------------NISDIKGP-ITV----VTGKKRRLTFIECPNDI-- 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--------------cccccccc-EEE----EecCCceEEEEeCCchH--
Confidence 4567899999999999999999998542110 00011221 111 22357789999999964
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
..++..+..+|.+++|+|+..+...++.+.+..+...++|.+|+++||+|+.+.....+.+..++++.+..--++ ..
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 171 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ--GA 171 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC--CC
Confidence 566667789999999999999999999988888888999977767899999865444455555666533211122 46
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEe
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (593)
+++++||++. +.-+| .....++..|...-+......+....|.++.+..+
T Consensus 172 ki~~iSa~~~--~~~~~---~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 172 KLFYLSGIVH--GRYPK---TEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred cEEEEeeccC--CCCCH---HHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 8999999975 22222 23445666666544433333444444666666544
No 153
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=1.9e-15 Score=139.44 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=98.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|++++|||||+++|++..... ......+.+.......+......+.||||||+++|....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--------------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR 66 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH
Confidence 589999999999999999998542110 000011222222223333334567899999999998887
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH--------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ--------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~--------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+..+|++|+|+|+++... ....+.+..+.. .+.| ++++.||+|+.+.... -..+...+....
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 140 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV---SEDEGRLWAESK-- 140 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc---CHHHHHHHHHHc--
Confidence 777889999999999987422 112222222222 2345 5667899998742110 011222333332
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++++||++| .++.+++++|.+.
T Consensus 141 ---~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 165 (168)
T cd04119 141 ---GFKYFETSACTG----------EGVNEMFQTLFSS 165 (168)
T ss_pred ---CCeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 367999999998 6899999988654
No 154
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.66 E-value=1.9e-15 Score=141.92 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=102.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|..|+|||||+++|.+..... + . .|.......+..++..+.++|+||+.++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-------~--------~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 74 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-------H--------Q----PTQHPTSEELAIGNIKFTTFDLGGHQQA 74 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-------c--------C----CccccceEEEEECCEEEEEEECCCCHHH
Confidence 3566999999999999999999997531100 0 0 1111122233446778999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++.. .....+.+..+. ..++|. ++++||+|+...-. .+ ++.+.+.....
T Consensus 75 ~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pi-liv~NK~Dl~~~~~-~~----~i~~~l~l~~~ 148 (184)
T smart00178 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPF-LILGNKIDAPYAAS-ED----ELRYALGLTNT 148 (184)
T ss_pred HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCE-EEEEeCccccCCCC-HH----HHHHHcCCCcc
Confidence 888888889999999999998732 233333333322 246774 55679999864210 11 22222211110
Q ss_pred -------CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 164 -------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 164 -------~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
......++++||++| .|+.+++++|.+
T Consensus 149 ~~~~~~~~~~~~~i~~~Sa~~~----------~g~~~~~~wl~~ 182 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRR----------MGYGEGFKWLSQ 182 (184)
T ss_pred cccccccCCceeEEEEeecccC----------CChHHHHHHHHh
Confidence 112456999999998 689999999865
No 155
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=2e-15 Score=139.42 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=100.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.++|+++|+.++|||||+++|...... .. .....|.+.......+......+.+|||||+++|...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~------------~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFM------------AD--CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC------------CC--CCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 379999999999999999999743110 00 0001122222222233333446789999999999988
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
+...++.+|++++|+|+++... ....+.+...... +.| ++++.||+|+.+..... ..+..++++.. .
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 138 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVT---YEEAKQFADEN-----G 138 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHc-----C
Confidence 8888899999999999987332 2222333333332 345 55567999997542211 12334444433 4
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++++++||++| .++.+++..+..
T Consensus 139 ~~~~e~Sa~~~----------~~i~e~f~~l~~ 161 (166)
T cd04122 139 LLFLECSAKTG----------ENVEDAFLETAK 161 (166)
T ss_pred CEEEEEECCCC----------CCHHHHHHHHHH
Confidence 68999999998 688888877654
No 156
>KOG0094|consensus
Probab=99.66 E-value=9.5e-15 Score=130.31 Aligned_cols=171 Identities=18% Similarity=0.178 Sum_probs=121.1
Q ss_pred cccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 5 ~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
.+..+.+..+++++|..++|||||+.+......++.... .-|+..-.....++....++.+|||+|
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqA--------------TIGiDFlskt~~l~d~~vrLQlWDTAG 80 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQA--------------TIGIDFLSKTMYLEDRTVRLQLWDTAG 80 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccc--------------eeeeEEEEEEEEEcCcEEEEEEEeccc
Confidence 345556679999999999999999999987654432211 112222223333343455677999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHc-CC--CeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQV-GV--PYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l-~i--p~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
+++|.....++++.+.++|+|.|.++ ..+.+|...+.-+... +- ..+.+|-||.||+++.+... ++-+...+.
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~---eEg~~kAke 157 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI---EEGERKAKE 157 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH---HHHHHHHHH
Confidence 99999999999999999999999987 6677888777666654 33 23444569999998733221 122233444
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~ 207 (593)
+ +.-++.+||+.| .++..|+..|...+|.+..
T Consensus 158 l-----~a~f~etsak~g----------~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 158 L-----NAEFIETSAKAG----------ENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred h-----CcEEEEecccCC----------CCHHHHHHHHHHhccCccc
Confidence 4 356999999998 6788999999888876543
No 157
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.5e-15 Score=143.60 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=100.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee--eeEEeeCCeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..|+|||||+++|.......+ +....+..+.. ...+......+.||||||+++|..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG---------------NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---------------CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4799999999999999999975321100 00111112222 222222335678999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.....+..+|++++|+|+++... ......+..+..+ ++| ++++.||+|+....... ..+...+.+..
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~l~~~~----- 136 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVK---REDGERLAKEY----- 136 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccC---HHHHHHHHHHc-----
Confidence 77778889999999999987322 2223333333333 566 55567999986431111 11233333333
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+|++++||++| .++++++++|.+.+.
T Consensus 137 ~~~~~e~Sa~~~----------~~v~~l~~~l~~~~~ 163 (191)
T cd04112 137 GVPFMETSAKTG----------LNVELAFTAVAKELK 163 (191)
T ss_pred CCeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 368999999998 689999999877654
No 158
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.66 E-value=2.4e-15 Score=142.63 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=101.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
+.|+++|..++|||||+.++..... ..+....++.+.....++.++ ..+.||||+|+++|..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f----------------~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF----------------CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC----------------CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH
Confidence 3689999999999999999974311 111111223333323344444 5678999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.+...++.+|++|+|+|.++... ......+..+.. .++| ++++.||+|+.+..+.. ..+..++.+.. .
T Consensus 65 l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~a~~~----~ 136 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIS---RQQGEKFAQQI----T 136 (202)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHhc----C
Confidence 88888999999999999998332 222333333333 2466 55567999987532211 11233344332 1
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++.+||++| .++++++++|...+
T Consensus 137 ~~~~~etSAktg----------~gV~e~F~~l~~~~ 162 (202)
T cd04120 137 GMRFCEASAKDN----------FNVDEIFLKLVDDI 162 (202)
T ss_pred CCEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 367999999998 67888887776543
No 159
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=2.4e-15 Score=139.04 Aligned_cols=157 Identities=20% Similarity=0.157 Sum_probs=100.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.++|+++|.+|+|||||++++++...... .....|.+.......+......+.+|||||+++|...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--------------FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--------------cccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 58999999999999999999985421110 0011122222222223323356789999999999888
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
....+..+|++++|+|+++... .+..+.+..+.. .++|.+ ++.||+|+.+.... ...+...+.+.. .
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 139 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM-LVGNKCDMEEKRVV---SKEEGEALADEY-----G 139 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECcccccccCC---CHHHHHHHHHHc-----C
Confidence 7777889999999999987332 122222332332 256744 45799999853211 111233334332 4
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.|++++||++| .++.++++.+.+.
T Consensus 140 ~~~~~~Sa~~~----------~~v~~~~~~i~~~ 163 (167)
T cd01867 140 IKFLETSAKAN----------INVEEAFFTLAKD 163 (167)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 68999999998 6888988887654
No 160
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.66 E-value=1.2e-15 Score=144.12 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=103.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.+...+|+++|+.|+|||||+++|.+..... + ..|.......+..++..+.++|+||+.++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-------~------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-------H------------VPTLHPTSEELTIGNIKFKTFDLGGHEQA 76 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcc-------c------------CCccCcceEEEEECCEEEEEEECCCCHHH
Confidence 3557899999999999999999997532100 0 01111222344556778899999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++.. .....+.+.... ..+.|.+ |++||+|+... ... .++.+.++....
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi-vv~NK~Dl~~~-~~~----~~~~~~~~~~~~ 150 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL-ILGNKIDLPGA-VSE----EELRQALGLYGT 150 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE-EEEeCCCCCCC-cCH----HHHHHHhCcccc
Confidence 887777888999999999998632 222333333222 2357754 56799998742 111 133333332111
Q ss_pred -----------CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 -----------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 -----------~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.....+++++||++| .|+.+++++|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~gv~e~~~~l~~~ 189 (190)
T cd00879 151 TTGKGVSLKVSGIRPIEVFMCSVVKR----------QGYGEAFRWLSQY 189 (190)
T ss_pred cccccccccccCceeEEEEEeEecCC----------CChHHHHHHHHhh
Confidence 112467999999998 6899999998764
No 161
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=2e-15 Score=169.73 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=113.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh----
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA---- 86 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~---- 86 (593)
..++|+++|++|+|||||+++|++..... .....|+|.+.....++.++..+.||||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~---------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV---------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc---------------cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcc
Confidence 45899999999999999999998642110 01123666666555667788889999999952
Q ss_pred -----hhHHH--HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 87 -----DYIKN--MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 87 -----~~~~~--~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+|... ....+..+|++++|+|++++...|....+..+...++|.+ +++||+|+.+.+. .+.+..++...+.
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL~~~~~-~~~~~~~~~~~l~ 591 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDLMDEFR-RQRLERLWKTEFD 591 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhcCChhH-HHHHHHHHHHhcc
Confidence 23222 2344678999999999999998888888887777888855 5689999987422 2333333443332
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.. ...|++++||++| .++.+|++.+.+..
T Consensus 592 ~~----~~~~ii~iSAktg----------~gv~~L~~~i~~~~ 620 (712)
T PRK09518 592 RV----TWARRVNLSAKTG----------WHTNRLAPAMQEAL 620 (712)
T ss_pred CC----CCCCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 22 2468999999998 56777777665544
No 162
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=2.7e-15 Score=137.57 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+|+|||||+++|++...... ... ..+.+. .....+......+.+|||||+++|...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~---------~~~-----t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE---------YDP-----TIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC---------cCC-----cchheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 6899999999999999999985321000 000 001111 1112222223456789999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...+..+|++++|+|.++... ......+..+.. .++| ++++.||+|+.+.... ..+..++.+.. .
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~----~~~~~~~~~~~-----~ 136 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVS----SRQGQDLAKSY-----G 136 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceec----HHHHHHHHHHh-----C
Confidence 888889999999999986321 111122222222 3567 4556799998763211 12333444433 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++++++||++| .++++++++|.+.
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 160 (162)
T cd04138 137 IPYIETSAKTR----------QGVEEAFYTLVRE 160 (162)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 57999999998 6899999988653
No 163
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=4.8e-15 Score=137.35 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=99.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee--eeEEeeCCeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..++|+++|..++|||||+++++..... .+....++.+.. ...+......+.|||+||+++|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC----------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 5689999999999999999999743110 001111222222 2223333445678999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHH-H------HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA-R------QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~-~------~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
...+...++.+|++++|+|.++... ....+.+..+ . ..++|. +++.||+|+...... ..++.++++.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~----~~~~~~~~~~ 142 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VVLGNKNDIPERQVS----TEEAQAWCRE 142 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcE-EEEEECccccccccC----HHHHHHHHHH
Confidence 8888888889999999999987432 1111111111 1 124674 556799998643111 1244555555
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+ ..+++++||++| .++.++++.+.+
T Consensus 143 ~~----~~~~~e~Sa~~~----------~~v~~~~~~~~~ 168 (170)
T cd04116 143 NG----DYPYFETSAKDA----------TNVAAAFEEAVR 168 (170)
T ss_pred CC----CCeEEEEECCCC----------CCHHHHHHHHHh
Confidence 43 257999999998 688888888764
No 164
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=3e-15 Score=136.33 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=101.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+++|||||+++|+....... .....+.+..............+.+||+||+..|....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH
Confidence 4799999999999999999985421110 01111222222222333344678899999999999988
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
...+..+|++++|+|+.+... ......+..+... +.| ++|++||+|+...... ...++.++.... ..
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~ 137 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV---STEEAQQFAKEN-----GL 137 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc---cHHHHHHHHHHc-----CC
Confidence 888899999999999987322 2223344444443 367 5556899999732211 122344444432 47
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
+++.+|++++ .++.+++++|.
T Consensus 138 ~~~~~sa~~~----------~~i~~~~~~i~ 158 (159)
T cd00154 138 LFFETSAKTG----------ENVEELFQSLA 158 (159)
T ss_pred eEEEEecCCC----------CCHHHHHHHHh
Confidence 8999999997 68888888764
No 165
>PTZ00369 Ras-like protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=142.33 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=100.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+.++|+++|+.|+|||||+.++.+...... .. ...+.+. .....++.....+.||||||+++|.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~---------~~-----~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDE---------YD-----PTIEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcC---------cC-----CchhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 3568999999999999999999985321100 00 0001111 1112233334457799999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++... ....+.+..+.. -++| ++++.||+|+.+...... .+...+.+.+
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~~---~~~~~~~~~~--- 140 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVST---GEGQELAKSF--- 140 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCH---HHHHHHHHHh---
Confidence 888888899999999999987432 222333322222 2567 455679999864311111 1222333332
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..|++++||++| .++.+++++|.+.+.
T Consensus 141 --~~~~~e~Sak~~----------~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 141 --GIPFLETSAKQR----------VNVDEAFYELVREIR 167 (189)
T ss_pred --CCEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 368999999998 688888888876543
No 166
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=3.7e-15 Score=139.53 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=100.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe----------eCCeEEEEE
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE----------TKARHYAHV 80 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~----------~~~~~~~ii 80 (593)
..++|+++|..++|||||++++........ ....-|.........+. .....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK--------------FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCcc--------------CCCccceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 458999999999999999999975321100 00011111111112221 123567899
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
||||+++|...+...++.+|++++|+|+++... ......+..+... +.| ++++.||+|+.+..... ..+..
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~---~~~~~ 144 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS---EEQAK 144 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC---HHHHH
Confidence 999999998888888899999999999987322 1122223233322 455 55567999987532111 12334
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++.+.. .+|++++||++| .+++++++.|.+.
T Consensus 145 ~~~~~~-----~~~~~e~Sak~~----------~~v~~l~~~l~~~ 175 (180)
T cd04127 145 ALADKY-----GIPYFETSAATG----------TNVEKAVERLLDL 175 (180)
T ss_pred HHHHHc-----CCeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 445443 357999999998 6888988888653
No 167
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.65 E-value=1.6e-15 Score=140.44 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=101.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|..++|||||+++|.+.... . ...|+......++..+..+.+|||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~------------~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM------------Q-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC------------C-------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 5899999999999999999853110 0 01122222233556778899999999999988888
Q ss_pred HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC-CCCC
Q psy8869 94 TGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF-PGND 167 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 167 (593)
..+..+|++++|+|+++.. .....+.+..+.. .+.| ++++.||+|+.+.. .. .++.++++...+ ....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~----~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGAL-SV----EEMTELLSLHKLCCGRS 135 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccCC-CH----HHHHHHhCCccccCCCc
Confidence 8889999999999998732 2233333333322 1355 56678999986431 11 123333322221 1123
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++++++||++| .++.+++++|.+.+.
T Consensus 136 ~~~~~~Sa~~g----------~gv~~~f~~l~~~~~ 161 (169)
T cd04158 136 WYIQGCDARSG----------MGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEeCcCCCC----------CCHHHHHHHHHHHHh
Confidence 57889999998 689999999987554
No 168
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=2.9e-15 Score=140.32 Aligned_cols=158 Identities=20% Similarity=0.155 Sum_probs=102.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|..++|||||+.++.... +. . .+...|.. ...++..+..+.+|||||+++|.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~-------~~-----~---~~~T~~~~----~~~~~~~~~~~~l~D~~G~~~~~ 75 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGE-------VV-----T---TIPTIGFN----VETVEYKNLKFTMWDVGGQDKLR 75 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC-------cc-----c---cCCccccc----eEEEEECCEEEEEEECCCCHhHH
Confidence 456899999999999999999986321 10 0 01111221 12344567889999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++|+|+|+++.. .....+.+..... ...| ++++.||+|+.+... .+ ++...+......
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~l~~~~~~ 149 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMS-TT----EVTEKLGLHSVR 149 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCC-HH----HHHHHhCCCccc
Confidence 88888889999999999998621 2233333332221 2455 556789999865311 11 222222211122
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...++++++||++| .++.+++++|.+.+
T Consensus 150 ~~~~~~~~~Sa~tg----------~gv~e~~~~l~~~i 177 (182)
T PTZ00133 150 QRNWYIQGCCATTA----------QGLYEGLDWLSANI 177 (182)
T ss_pred CCcEEEEeeeCCCC----------CCHHHHHHHHHHHH
Confidence 23457889999998 78999999987644
No 169
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.65 E-value=2.2e-15 Score=138.17 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=100.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+++|||||+++|+...... ..+...+.+.......+......+.+||+||+++|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 589999999999999999998532110 111222333333333333334568899999999998877
Q ss_pred HHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...++.+|++++|+|+++....+ ...++..+.. .+.|.+ ++.||+|+...+... .+...+.+.. .
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~-iv~nK~D~~~~~~~~----~~~~~~~~~~-----~ 136 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM-LVGNKIDKENREVTR----EEGLKFARKH-----N 136 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE-EEEECCcccccccCH----HHHHHHHHHc-----C
Confidence 77788999999999998733212 2222333322 356644 567999998432111 1233334332 4
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++++++||++| .++.++++.+.+
T Consensus 137 ~~~~~~Sa~~~----------~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFIETSAKTR----------DGVQQAFEELVE 159 (161)
T ss_pred CEEEEEecCCC----------CCHHHHHHHHHH
Confidence 68999999998 689999988765
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=8.8e-15 Score=134.48 Aligned_cols=157 Identities=22% Similarity=0.198 Sum_probs=101.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh---
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~--- 88 (593)
..+|+++|.+|+|||||+++|++........ ....+.......+...+..+.+|||||....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP---------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC---------------CCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 5789999999999999999998532110000 0112222222223445678899999996432
Q ss_pred -----HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 -----IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 -----~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
.......+..+|++++|+|+++.........+..+...+.|.++ ++||+|+....+..... +..+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ii-v~nK~Dl~~~~~~~~~~---~~~~~~~~-- 141 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVIL-VLNKIDLVKDKEDLLPL---LEKLKELG-- 141 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEE-EEEchhccccHHHHHHH---HHHHHhcc--
Confidence 23344557789999999999987555555566666667788555 67999998432222222 22222221
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
...+++++|++++ .+++++++.|.+.
T Consensus 142 --~~~~~~~~s~~~~----------~~~~~l~~~l~~~ 167 (168)
T cd04163 142 --PFAEIFPISALKG----------ENVDELLEEIVKY 167 (168)
T ss_pred --CCCceEEEEeccC----------CChHHHHHHHHhh
Confidence 1368999999997 6889999988764
No 171
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.65 E-value=1.4e-15 Score=121.93 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=76.7
Q ss_pred CeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCcc
Q psy8869 212 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVER 291 (593)
Q Consensus 212 ~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~ 291 (593)
||+|+|+++|+.. |++++|+|++|++++||++.+.|.+ ..++|++|+.++.++++|.|||+++++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK--TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC--cEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7999999999864 8999999999999999999999865 67999999999999999999999999999999999999
Q ss_pred ceEEec
Q psy8869 292 GQVLAK 297 (593)
Q Consensus 292 G~vl~~ 297 (593)
|++|++
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999974
No 172
>KOG0084|consensus
Probab=99.65 E-value=4e-15 Score=133.38 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=110.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~~ 87 (593)
...++|.++|..|+|||.|+-++.. +...++....+.++.....++.+++ .+.+|||+|+++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER 70 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQER 70 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHH
Confidence 4568999999999999999999863 3444455555666766666666655 467999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+.+++++|+++|+|.|.++- .+......+..+.. .++|.++| -||+|+.+...... .+.+++...++
T Consensus 71 Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLV-GNK~Dl~~~~~v~~---~~a~~fa~~~~- 145 (205)
T KOG0084|consen 71 FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLV-GNKCDLTEKRVVST---EEAQEFADELG- 145 (205)
T ss_pred HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEE-eeccccHhheecCH---HHHHHHHHhcC-
Confidence 999999999999999999999973 23333333444444 36787765 69999986522111 13345555554
Q ss_pred CCCCce-EEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 164 PGNDIP-IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 164 ~~~~~~-vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+| ++++||+.+ .++++.+..|..
T Consensus 146 ----~~~f~ETSAK~~----------~NVe~~F~~la~ 169 (205)
T KOG0084|consen 146 ----IPIFLETSAKDS----------TNVEDAFLTLAK 169 (205)
T ss_pred ----CcceeecccCCc----------cCHHHHHHHHHH
Confidence 45 999999997 455565555543
No 173
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=4.9e-15 Score=136.81 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=99.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|+.|+|||||+++|........ .... ....++. ..+......+.+|||||+.++...+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~---------~~~~----~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN---------VPRV----LPEITIP---ADVTPERVPTTIVDTSSRPQDRANL 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc---------CCCc----ccceEee---eeecCCeEEEEEEeCCCchhhhHHH
Confidence 4899999999999999999986421100 0000 0011111 1222345678899999999888777
Q ss_pred HHhhhcCCEEEEEEECCCCCChhhH--HHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt~--e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
...+..+|++++|+|+++...-+.. .++..+.. .++| +++++||+|+.+..... ....++..+.+.+.. ..
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~ 139 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IE 139 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---cc
Confidence 7778899999999999874433221 12233332 2567 45567999997643211 112233333333221 14
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+++++||++| .+++++++.+...
T Consensus 140 ~~~e~Sa~~~----------~~v~~lf~~~~~~ 162 (166)
T cd01893 140 TCVECSAKTL----------INVSEVFYYAQKA 162 (166)
T ss_pred EEEEeccccc----------cCHHHHHHHHHHH
Confidence 7999999998 6889999887664
No 174
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.65 E-value=3.3e-15 Score=137.77 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=97.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..|+|||||+++++....... ... ..+.+. .....+......+.+|||||+++|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--------~~~------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--------YIP------TIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--------cCC------cchheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 6899999999999999999985321100 000 001111 1112223334567899999999998777
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
...+..+|++++|+|.++... ......+..+.. .++|.+ ++.||+|+.+..+... .+...+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~---~~~~~~~~~~---- 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIM-LVGNKCDESHKREVSS---NEGAACATEW---- 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEE-EEEECccccccCeecH---HHHHHHHHHh----
Confidence 777889999999999987432 223333333333 357755 4679999975322111 1112222222
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.++++++||++| .++.+++++|.+
T Consensus 139 -~~~~~e~SA~~g----------~~v~~~f~~l~~ 162 (165)
T cd04140 139 -NCAFMETSAKTN----------HNVQELFQELLN 162 (165)
T ss_pred -CCcEEEeecCCC----------CCHHHHHHHHHh
Confidence 467999999998 689999998865
No 175
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.64 E-value=3.1e-15 Score=140.41 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEE-eeCCeEEEEEecCChhhhHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-ETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-~~~~~~~~iiDtpGh~~~~~ 90 (593)
.++|+++|+.|+|||||++++...... .. ....|.+........ ......+.+|||||+++|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 479999999999999999999742110 00 001122222111111 12356789999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhH----HHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC-
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTR----EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP- 164 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~----e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~- 164 (593)
.+...+..+|++++|+|+++... .... +........++|.+ +++||+|+.+... . .++..++......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~NK~D~~~~~~-~----~~~~~~~~~~~~~~ 141 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVL-VLANKQDLPNALS-V----SEVEKLLALHELSA 141 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEE-EEEECcCccccCC-H----HHHHHHhCccccCC
Confidence 77777889999999999987421 1111 12222233567854 5679999864210 0 1222222211111
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...++++++||++| .|+++++++|.+.+
T Consensus 142 ~~~~~~~~~SA~~~----------~gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQPACAIIG----------EGLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEEEeecccC----------CCHHHHHHHHHHHH
Confidence 12367999999998 68888888877654
No 176
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=4.6e-15 Score=136.75 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=100.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYI 89 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~ 89 (593)
.++|+++|.+++|||||+++|++..... +....++.+.....+..++ ..+.+||+||+++|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL----------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 4799999999999999999998532110 0011222222223333333 467899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
......+..+|++++|+|+++... ....+.+..+.. .++| ++++.||+|+.+.... ...+...++...
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~---~~~~~~~~~~~~---- 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTEEAKAFAEKN---- 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---CHHHHHHHHHHc----
Confidence 888888889999999999986222 122222233322 2456 5556799998753211 111333344332
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++++||++| .++.++++.+...
T Consensus 139 -~~~~~~~Sa~~~----------~~v~~l~~~l~~~ 163 (165)
T cd01868 139 -GLSFIETSALDG----------TNVEEAFKQLLTE 163 (165)
T ss_pred -CCEEEEEECCCC----------CCHHHHHHHHHHH
Confidence 468999999998 6899999988654
No 177
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.64 E-value=2.4e-15 Score=139.79 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=102.1
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
+....++|+++|+.|+|||||+++|.+..... .....|.+ ...++.++..+.+||+||+.+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~---------------~~~t~g~~----~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH---------------ITPTQGFN----IKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc---------------cCCCCCcc----eEEEEECCEEEEEEECCCCHH
Confidence 34557999999999999999999998531100 00112222 223445678899999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHH----HHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~----~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+...+...+..+|++++|+|+.+.. .......+... ...++|. ++++||+|+.+... .+ ++.+.+....
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~----~i~~~l~~~~ 144 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV-LVFANKQDLATAAP-AE----EIAEALNLHD 144 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECCCCccCCC-HH----HHHHHcCCcc
Confidence 8877777788999999999998621 12222222222 2346784 45679999876421 11 1222222212
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+.....+++++||++| .|+++++++|.+
T Consensus 145 ~~~~~~~~~~~Sa~~~----------~gi~~~~~~l~~ 172 (173)
T cd04155 145 LRDRTWHIQACSAKTG----------EGLQEGMNWVCK 172 (173)
T ss_pred cCCCeEEEEEeECCCC----------CCHHHHHHHHhc
Confidence 2223456889999998 789999999854
No 178
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=4.1e-15 Score=136.92 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=98.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|.+|+|||||++++...... ... . ..+.+.....+..+ ...+.+|||||+++|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~------------~~~----~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV------------EKY----D-PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC------------ccc----C-CcchheEEEEEEECCEEEEEEEEECCCcccchh
Confidence 68999999999999999998743110 000 0 01111111223333 34567999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|.++... ....+.+..+. ..++| ++++.||+|+.+...... .+..++.+.+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~---- 136 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGK---EQGQNLARQW---- 136 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEcH---HHHHHHHHHh----
Confidence 88888999999999999876322 22222222222 13577 555689999975311100 1223333333
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+|++++||++| .++.++++++.+.+
T Consensus 137 -~~~~~~~Sa~~~----------~~v~~~~~~l~~~l 162 (164)
T cd04175 137 -GCAFLETSAKAK----------INVNEIFYDLVRQI 162 (164)
T ss_pred -CCEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 368999999998 68999999887643
No 179
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=4.2e-15 Score=142.16 Aligned_cols=152 Identities=22% Similarity=0.238 Sum_probs=96.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADY 88 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~~ 88 (593)
++.++|+++|++|+|||||+++|++....... ..+.|++.....+..++ ..+.+|||||+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED----------------QLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC----------------ccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 45589999999999999999999864211000 01223333333333433 37999999997221
Q ss_pred --------HHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHH
Q psy8869 89 --------IKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (593)
Q Consensus 89 --------~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~ 156 (593)
...+...+..+|++++|+|+++..... ...+...+... ++| +++|+||+|+.+..... .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~~--------~ 173 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEELE--------E 173 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHHH--------H
Confidence 112233456899999999998764332 33333333333 456 55568999998753221 1
Q ss_pred HHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.... ...+++++||+++ .++.+++++|...
T Consensus 174 ~~~~-----~~~~~~~~Sa~~~----------~gi~~l~~~L~~~ 203 (204)
T cd01878 174 RLEA-----GRPDAVFISAKTG----------EGLDELLEAIEEL 203 (204)
T ss_pred Hhhc-----CCCceEEEEcCCC----------CCHHHHHHHHHhh
Confidence 1111 2468999999998 6899999988654
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.64 E-value=7.6e-15 Score=136.08 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYI 89 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~ 89 (593)
.++|+++|+.|+|||||+++++.... +.+....++.+.....+..+ ...+.+|||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF----------------PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC----------------CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 47999999999999999999974311 11111122222222233333 3578899999999987
Q ss_pred HH-HHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 90 KN-MITGAAQMDGAILVCSAADGPMPQT-REHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 90 ~~-~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
.. ....+..+|++++|+|+++...-+. ...+..+... ++|.++ +.||+|+........ .+..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ii-v~nK~Dl~~~~~~~~---~~~~~~~~~~-- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRIL-VGNKCDLREQIQVPT---DLAQRFADAH-- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEE-EEECccchhhcCCCH---HHHHHHHHHc--
Confidence 53 4455679999999999987543222 2333333332 477554 579999875421111 1222333332
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||+++.+. .++.+++..+...+
T Consensus 140 ---~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 ---SMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred ---CCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 478999999985222 57888888776543
No 181
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.64 E-value=5.2e-15 Score=140.86 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=102.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~ 88 (593)
..++|+++|..|+|||||+++|.+.... .+....++.+.....+..+ ...+.|||+||+++|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH
Confidence 4689999999999999999999743110 0001112222222233333 346789999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
...+...+..+|++++|+|+++... ......+..+... .+| ++|+.||+|+.+..... ..+...+.+..
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~---~~~~~~~~~~~---- 140 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVE---TEDAYKFAGQM---- 140 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccC---HHHHHHHHHHc----
Confidence 8888888889999999999987432 2223333333332 356 45567999987542211 12333444433
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+++++||++| .++.+++++|...+
T Consensus 141 -~~~~~e~Sa~~~----------~gi~~lf~~l~~~~ 166 (199)
T cd04110 141 -GISLFETSAKEN----------INVEEMFNCITELV 166 (199)
T ss_pred -CCEEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 367999999998 68899998887654
No 182
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.63 E-value=3.9e-15 Score=136.94 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=97.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+|+|||||+.++........ .+... + ........+......+.||||||+++|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK---------YDPTI-----E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---------CCCch-----h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 6899999999999999999875321100 00000 0 0111112222223356789999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...+..+|++++|+|.++.. +....+.+..+.. .++|.+ ++.||+|+.+...... .+...+.+.. .
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv-iv~nK~Dl~~~~~~~~---~~~~~~~~~~-----~ 137 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII-LVGNKVDLESEREVSS---AEGRALAEEW-----G 137 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccchhcCccCH---HHHHHHHHHh-----C
Confidence 88889999999999998732 1222333322322 367754 5679999865321110 1222333332 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++++||++| .++.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd04176 138 CPFMETSAKSK----------TMVNELFAEIVRQM 162 (163)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHHhc
Confidence 58999999998 68999999887643
No 183
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.63 E-value=5.2e-15 Score=137.10 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=100.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~~ 91 (593)
+|+++|+.++|||||++++.+.... .+....+..+.....+..+ ...+.||||||+++|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD----------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 6999999999999999999853211 0111112222222223333 356789999999999988
Q ss_pred HHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCC---CeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGV---PYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~i---p~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
+...++.+|++++|+|+++.. .....+++..+..... +.++++.||+|+.+... ......+...+.+.+ .
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-~~~~~~~~~~~~~~~-----~ 139 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-YALMEQDAIKLAAEM-----Q 139 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc-ccccHHHHHHHHHHc-----C
Confidence 888889999999999997722 2222333433332222 33566789999865422 111122333444433 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++.+||++| .+++++++.|.+..
T Consensus 140 ~~~~e~Sa~~g----------~~v~~lf~~l~~~~ 164 (170)
T cd04108 140 AEYWSVSALSG----------ENVREFFFRVAALT 164 (170)
T ss_pred CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 68899888887653
No 184
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=3.4e-15 Score=166.91 Aligned_cols=153 Identities=24% Similarity=0.323 Sum_probs=108.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH-
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK- 90 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~- 90 (593)
.++|+++|++|+|||||+|+|++.....+ ...|.|.+.....++.++..+.++||||+.+|..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg----------------n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 47899999999999999999986432111 1248888888778888889999999999877642
Q ss_pred -------HHH--Hh--hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 91 -------NMI--TG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 91 -------~~~--~~--~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+.+ .. ...+|.+++|+|+++.... ......+..+++|.+ +++||+|+.+.... ..+++++.+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~--l~l~~ql~e~giPvI-vVlNK~Dl~~~~~i----~id~~~L~~ 139 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERN--LYLTLQLLELGIPCI-VALNMLDIAEKQNI----RIDIDALSA 139 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcchhh--HHHHHHHHHcCCCEE-EEEEchhhhhccCc----HHHHHHHHH
Confidence 111 11 1378999999999874332 223345667899955 56899998753221 123334444
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+ .+|++++||.+| .+++++.+.+....
T Consensus 140 ~L-----G~pVvpiSA~~g----------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RL-----GCPVIPLVSTRG----------RGIEALKLAIDRHQ 167 (772)
T ss_pred Hh-----CCCEEEEEeecC----------CCHHHHHHHHHHhh
Confidence 44 368999999998 68899999887754
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=7.4e-15 Score=157.12 Aligned_cols=152 Identities=21% Similarity=0.214 Sum_probs=110.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh----h
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----Y 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~----~ 88 (593)
.+|+++|++|+|||||+++|++..... .....|+|.+......+.++..+.+|||||+.+ +
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~---------------v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI---------------VADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee---------------eCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 479999999999999999998542110 011235666666666777788999999999887 3
Q ss_pred ----HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 ----IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ----~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
......++..+|++++|+|+.++......+....+...+.|.+ +++||+|+.+.+. ...++ ..+++
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~~~~~~-------~~~~~-~~lg~- 136 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDGPDEEA-------DAYEF-YSLGL- 136 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCccchh-------hHHHH-HhcCC-
Confidence 3334556779999999999999887777777788888898855 5679999765321 11222 12333
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..++++||++| .++.++++.+....
T Consensus 137 ---~~~~~iSa~~g----------~gv~~l~~~I~~~~ 161 (435)
T PRK00093 137 ---GEPYPISAEHG----------RGIGDLLDAILEEL 161 (435)
T ss_pred ---CCCEEEEeeCC----------CCHHHHHHHHHhhC
Confidence 23789999998 68899999987643
No 186
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.63 E-value=7.3e-15 Score=141.59 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=101.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---CeEEEEEecCChhhhH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGHADYI 89 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpGh~~~~ 89 (593)
++|+++|..|+|||||+++|++.... .+....++.+.....+..+ ...+.||||||++.|.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~----------------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG----------------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 48999999999999999999753110 0111122333322333332 3567899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc-----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV-----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l-----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
......+..+|++++|+|+++.. +.+..+.+..+... ..+.++++.||+|+.+.... ...+...+.+..
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v---~~~~~~~~~~~~-- 139 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV---KDDKHARFAQAN-- 139 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc---CHHHHHHHHHHc--
Confidence 88878888999999999998732 22222233333332 12336667899999753211 112333444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+++++||++| .++++++++|...+.
T Consensus 140 ---~~~~~~iSAktg----------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 140 ---GMESCLVSAKTG----------DRVNLLFQQLAAELL 166 (215)
T ss_pred ---CCEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 357999999998 789999999877543
No 187
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.63 E-value=1.7e-15 Score=125.94 Aligned_cols=87 Identities=24% Similarity=0.446 Sum_probs=76.2
Q ss_pred CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-----C-C--cccccCCCEEEEEEEeCceeeee
Q psy8869 301 IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----K-N--KEMVMPGDNVLITVRLINPIAME 372 (593)
Q Consensus 301 ~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----~-~--~~~l~~gd~~~v~~~~~~p~~~~ 372 (593)
++++++|+|++.+|+++ ++|..||++++|+++.+++|++... . + +++|++||.|.|+|++++|+|++
T Consensus 2 ~k~~~~f~A~v~vl~~~-----~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~~pi~ve 76 (99)
T PF03143_consen 2 IKAVNRFEAQVIVLDHP-----KPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQKPICVE 76 (99)
T ss_dssp SEEEEEEEEEEEESSGS-----S-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEEEEEEET
T ss_pred CcccCEEEEEEEEEcCC-----ccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeeccceeee
Confidence 56789999999999985 6899999999999999999977533 2 2 37999999999999999999999
Q ss_pred cCCeEEEeeCCeEEEeeeec
Q psy8869 373 EGLRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 373 ~~~r~vlr~~~~~i~~G~v~ 392 (593)
+++||+|||+|+|+|+|.|.
T Consensus 77 ~~~Rf~lR~~~~Tia~G~V~ 96 (99)
T PF03143_consen 77 PFSRFILRDGGKTIAVGVVT 96 (99)
T ss_dssp TTTEEEEEETTEEEEEEEEE
T ss_pred cCceEEEccCCeEEEEEEEE
Confidence 99999999999999999774
No 188
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=6.7e-15 Score=141.48 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=102.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.+..++|+++|+.|+|||||+++|++..... .....|.+.......+......+.||||||+++|
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVED---------------LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCC---------------cCCCceeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 4567899999999999999999998542110 0011122232333333333457789999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhH-HHH-HHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTR-EHI-LLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~-e~l-~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
.......+..+|++++|+|+++...-+.. +.+ ..+.. .++|.+ ++.||+|+....... ..+...+....
T Consensus 76 ~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~i~---~~~~~~~~~~~- 150 (211)
T PLN03118 76 RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM-LVGNKVDRESERDVS---REEGMALAKEH- 150 (211)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccCccC---HHHHHHHHHHc-
Confidence 88888888999999999999873222221 111 11221 245644 457999987532211 11223333332
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .+++++++.|...+
T Consensus 151 ----~~~~~e~SAk~~----------~~v~~l~~~l~~~~ 176 (211)
T PLN03118 151 ----GCLFLECSAKTR----------ENVEQCFEELALKI 176 (211)
T ss_pred ----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 367999999998 68899999887654
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=4.7e-15 Score=137.04 Aligned_cols=159 Identities=22% Similarity=0.188 Sum_probs=100.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|..++|||||+++|.+.... ....|+......++.++..+.++|+||+.+|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~-------------------~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK-------------------KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc-------------------cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999743100 001122222334556778899999999999998888
Q ss_pred HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHH--HHHHHhhcCCCCC
Q psy8869 94 TGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIE--IRELLNKYEFPGN 166 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~~~ 166 (593)
..+..+|++++|+|+++.. .....+.+..+.. .++|.+ +++||+|+.+.... ..+... +..+.+.. ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pil-iv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~---~~ 136 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPIL-VLANKQDKKNALLG-ADVIEYLSLEKLVNEN---KS 136 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEE-EEEeCCCCcCCCCH-HHHHHhcCcccccCCC---Cc
Confidence 8899999999999998742 2333444433332 366754 56799998764211 111111 11211111 12
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.++++++||++|... |. ..++.+.++||..
T Consensus 137 ~~~~~~~Sa~~g~~~---~~-~~g~~~~~~wl~~ 166 (167)
T cd04161 137 LCHIEPCSAIEGLGK---KI-DPSIVEGLRWLLA 166 (167)
T ss_pred eEEEEEeEceeCCCC---cc-ccCHHHHHHHHhc
Confidence 468999999997321 11 1478888888853
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=128.29 Aligned_cols=165 Identities=21% Similarity=0.172 Sum_probs=115.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh--hhhcCceEEeeeeEEeeCC-eEEEEEecCChh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE--EKARGITINTAHIEYETKA-RHYAHVDCPGHA 86 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~--e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~ 86 (593)
....+|++.|..|+||||++.+++....-.-. .+.... ...|..|+...+...+..+ ..+.++|||||+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~--------~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~ 79 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITE--------ADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE 79 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceee--------ccccccccccccceeEeecccceEEcCcceEEEecCCCcH
Confidence 45579999999999999999999865321000 000000 0134467666666666655 789999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC-CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~-ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
+|...+--..+++++++++||++.+.....++.+.+..... +| ++|++||.|+.+..- -++++++++.-.
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~p-----pe~i~e~l~~~~--- 150 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALP-----PEKIREALKLEL--- 150 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCC-----HHHHHHHHHhcc---
Confidence 99999998899999999999999977665566677777777 66 666789999987510 013344444322
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
...|+|+.+|..+ .+..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~----------~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEG----------EGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccc----------hhHHHHHHHHHhh
Confidence 2589999999876 4566666665543
No 191
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.63 E-value=6.1e-15 Score=134.38 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=98.8
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHH
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMIT 94 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~ 94 (593)
|+++|+.|+|||||+++|.+..... +... |..........+...+.+||+||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~----------------~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE----------------DTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc----------------CccC--CCCcceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 7999999999999999997531100 0011 111122233445677899999999999988888
Q ss_pred hhhcCCEEEEEEECCCC-CChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 95 GAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 95 ~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
.+..+|++++|+|+++. ...+..+.+..+.. .++|.+ +++||+|+.+.... + ++.+.+.........++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLL-VLGNKNDLPGALSV-D----ELIEQMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEE-EEEeCccccCCcCH-H----HHHHHhCcccccCCceE
Confidence 89999999999999863 22333344433322 467754 46799998764211 1 11111111111123578
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++++|+++| .++.+++++|.+
T Consensus 138 ~~~~Sa~~~----------~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEK----------TNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccC----------CChHHHHHHHhh
Confidence 999999998 689999988754
No 192
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=5.1e-15 Score=136.66 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=97.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..|+|||||+++++..... .+....+..+.....+..+ ...+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE----------------KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc
Confidence 48999999999999999999743110 0001111122222333333 35677999999999876
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHH-HHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTRE-HILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e-~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
.....+..+|++|+|+|.++...-+..+ .+..+... ++|. +++.||+|+...+.. .+..++.+. ..
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-iiv~nK~Dl~~~~~~-----~~~~~~~~~-----~~ 133 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPI-VLCGNKVDIKDRKVK-----AKQITFHRK-----KN 133 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEEchhcccccCC-----HHHHHHHHH-----cC
Confidence 6666677899999999998743322222 22222222 5774 556799999743211 111222222 24
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 134 ~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 158 (166)
T cd00877 134 LQYYEISAKSN----------YNFEKPFLWLARKL 158 (166)
T ss_pred CEEEEEeCCCC----------CChHHHHHHHHHHH
Confidence 78999999998 68999999987654
No 193
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.62 E-value=3.6e-15 Score=133.86 Aligned_cols=136 Identities=26% Similarity=0.251 Sum_probs=89.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh----hhhH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH----ADYI 89 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh----~~~~ 89 (593)
+|+++|++|+|||||+++|++... ....|+.. +... .+|||||+ ..+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--------------------~~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--------------------LYKKTQAV-----EYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--------------------ccccceeE-----EEcC---eeecCchhhhhhHHHH
Confidence 799999999999999999974310 00112211 1121 68999997 3445
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
..+...+..+|++++|+|++++...+..+.+. ..+.| +++++||+|+.+..... ++..++++..+. .+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~~~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~----~~ 121 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFAS---IFVKP-VIGLVTKIDLAEADVDI----ERAKELLETAGA----EP 121 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHH---hccCC-eEEEEEeeccCCcccCH----HHHHHHHHHcCC----Cc
Confidence 55555678999999999999876554433322 23446 45567999987532211 233444444332 47
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
++++||++| .++++++++|.
T Consensus 122 ~~~~Sa~~~----------~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFEISSVDE----------QGLEALVDYLN 141 (142)
T ss_pred EEEEecCCC----------CCHHHHHHHHh
Confidence 999999998 68999988764
No 194
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=4.5e-15 Score=140.20 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=96.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|..|+|||||+++|........ ... ..+... .....+......+.||||||+++|.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~---------~~~-----t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET---------YDP-----TIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc---------CCC-----chHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 489999999999999999974321100 000 001000 11111222223578999999999998888
Q ss_pred HhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 94 TGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
..++.+|++|+|+|.++... ....+.+..+.. .++| +|++.||+|+.+...... .+..++.+.+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~~---~~~~~~~~~~----- 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVST---EEGAALARRL----- 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccCH---HHHHHHHHHh-----
Confidence 88999999999999987432 222223333322 2466 455679999975322111 1223333333
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .+++++++++.+.+
T Consensus 137 ~~~~~e~SAk~~----------~~v~~l~~~l~~~l 162 (190)
T cd04144 137 GCEFIEASAKTN----------VNVERAFYTLVRAL 162 (190)
T ss_pred CCEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 357999999998 67888888887654
No 195
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.62 E-value=8.3e-15 Score=134.25 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=96.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|.+|+|||||+++|++..... . ....|.+. ....+ .....+.+||+||+.++...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------~---~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------T---IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------c---cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHH
Confidence 48999999999999999998542100 0 00112221 11222 1346789999999999988888
Q ss_pred HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC-CCC
Q psy8869 94 TGAAQMDGAILVCSAADGP-MPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP-GND 167 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 167 (593)
..+..+|++++|+|+++.. .......+.... ..+.| +++++||+|+.+... .+ ++...++...+. ...
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 136 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCSDRD 136 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCCCCc
Confidence 8888999999999998743 122222222221 13677 555689999864311 11 222222111111 124
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++++++||++| .|+++++++|.+
T Consensus 137 ~~~~~~Sa~~~----------~gv~~~~~~i~~ 159 (160)
T cd04156 137 WYVQPCSAVTG----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEEecccccC----------CChHHHHHHHhc
Confidence 68999999998 789999998754
No 196
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1.3e-14 Score=135.91 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=100.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..++|||||+.++.+..... ......|................+.+|||+|+++|...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--------------~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--------------DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 489999999999999999997532110 000111222222222222223567899999999998877
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCH--HHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
...+..+|++++|+|+++... ....+.+..+... .+| ++ +.||+|+... +...+.+..+..++.+..
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-il-VgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~----- 139 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-IL-VGTKYDLFADLPPEEQEEITKQARKYAKAM----- 139 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EE-EEEchhccccccchhhhhhHHHHHHHHHHc-----
Confidence 778889999999999987322 2223333444332 344 44 5799999631 111111223444555443
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+++++||++| .+++++++++...+
T Consensus 140 ~~~~~e~SAk~g----------~~v~~lf~~l~~~l 165 (182)
T cd04128 140 KAPLIFCSTSHS----------INVQKIFKIVLAKA 165 (182)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 367999999998 68899999887654
No 197
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=5.3e-15 Score=137.05 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=98.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..|+|||||+++|++........ ...................+.+||+||+++|....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV---------------PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC---------------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 589999999999999999998642100000 00000111112222334568899999999887666
Q ss_pred HHhhhcCCEEEEEEECCCCCC-h-hhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHH--------HHHHHHHHHhh
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-P-QTREHILLARQV--GVPYIVVFLNKADMVDDEELLEL--------VEIEIRELLNK 160 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~-qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~--------~~~~~~~~l~~ 160 (593)
...+..+|++++|+|+++... . ...+.+..+... ++|. +++.||+|+.+....... ...+..++...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPI-ILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 666788999999999987322 1 122233333332 4774 556799999865332110 12233444444
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+ ..+++++||++| .++.++++.+..
T Consensus 145 ~~----~~~~~~~Sa~~~----------~gi~~l~~~i~~ 170 (171)
T cd00157 145 IG----AIGYMECSALTQ----------EGVKEVFEEAIR 170 (171)
T ss_pred hC----CeEEEEeecCCC----------CCHHHHHHHHhh
Confidence 43 248999999998 689999988754
No 198
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=6.7e-15 Score=139.44 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=99.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..++|||||+++|++.....+ +.....|.+.......+......+.+||+||+++|....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG-------------PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc-------------CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 4899999999999999999985321100 000111222222222222223345699999999987777
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH-HHHHHHHHhhcCCCCCCc
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELV-EIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 168 (593)
...+..+|++++|+|+++... ......+..+... ++| ++++.||+|+.+.......+ ..++..+.... .+
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-----~~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-----KA 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHc-----CC
Confidence 667779999999999987322 2222333444433 567 45567999987532111111 12334444433 36
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+++++||++| .++.+|+++|.+.+
T Consensus 142 ~~~~~Sa~~~----------~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTG----------QNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999998 68889998887644
No 199
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.62 E-value=9.9e-15 Score=137.12 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=102.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe--eeeEEeeCCeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT--AHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..++|+++|..++|||||+.++..... ..+....++.+. ....+......+.||||||+++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~----------------~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 68 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST----------------ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF 68 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 568999999999999999999874211 011111222222 22223323356779999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
...+...++.+|++|||+|.++.. +......+..+.. -++| +||+.||+|+...... -..+.+++.+..
T Consensus 69 ~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v---~~~~~~~~a~~~---- 140 (189)
T cd04121 69 CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQV---ATEQAQAYAERN---- 140 (189)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCC---CHHHHHHHHHHc----
Confidence 988888888999999999998732 2333333433433 2566 4556799998653111 122444555543
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++.+||++| .+++++++.|...
T Consensus 141 -~~~~~e~SAk~g----------~~V~~~F~~l~~~ 165 (189)
T cd04121 141 -GMTFFEVSPLCN----------FNITESFTELARI 165 (189)
T ss_pred -CCEEEEecCCCC----------CCHHHHHHHHHHH
Confidence 467999999998 6788888887653
No 200
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=1.4e-14 Score=133.40 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=97.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhh--hcCceEEeeeeEEe-eCCeEEEEEecCChhhhH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEK--ARGITINTAHIEYE-TKARHYAHVDCPGHADYI 89 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~--~~g~t~~~~~~~~~-~~~~~~~iiDtpGh~~~~ 89 (593)
++|+++|..++|||||+++|..... ....+. ..|.........+. .....+.+|||||++.|.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGA--------------VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--------------CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 4899999999999999999874200 000111 11222222222232 234678899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
..+...+..+|++++|+|.++... ......+..+.. .++|. ++++||+|+.+..+.... +...+....
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~---~~~~~~~~~----- 137 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPG-VLVGNKMDLADKAEVTDA---QAQAFAQAN----- 137 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccccccCCCHH---HHHHHHHHc-----
Confidence 877778889999999999987322 111222233332 25674 556899998754221111 111222222
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++++||++| .++.++++.|.+.
T Consensus 138 ~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 162 (164)
T cd04101 138 QLKFFKTSALRG----------VGYEEPFESLARA 162 (164)
T ss_pred CCeEEEEeCCCC----------CChHHHHHHHHHH
Confidence 367999999998 6899999888653
No 201
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=1.3e-14 Score=148.99 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=98.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCCh----
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGH---- 85 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh---- 85 (593)
...+|+++|.+|+|||||+++|++..... +...+.|.+.....+.. ++..+.||||||.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v----------------~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYA----------------ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceee----------------ccCCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 44899999999999999999998642100 00124455555555555 4678999999997
Q ss_pred -----hhhHHHHHHhhhcCCEEEEEEECCCCCCh-hhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHH
Q psy8869 86 -----ADYIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (593)
Q Consensus 86 -----~~~~~~~~~~~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~ 156 (593)
+.| +.+...+..+|++++|+|+++.... +.......+..+ +.| +++|+||+|+.+.+.. ..
T Consensus 252 ~~~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~v--------~~ 321 (351)
T TIGR03156 252 PHELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPRI--------ER 321 (351)
T ss_pred CHHHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHhH--------HH
Confidence 233 2344557799999999999875432 222222333333 567 4556899999864221 11
Q ss_pred HHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
... . ..+++++||++| .|+++|++.|.+.
T Consensus 322 ~~~--~----~~~~i~iSAktg----------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 322 LEE--G----YPEAVFVSAKTG----------EGLDLLLEAIAER 350 (351)
T ss_pred HHh--C----CCCEEEEEccCC----------CCHHHHHHHHHhh
Confidence 111 1 246899999998 6899999988653
No 202
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.3e-14 Score=147.65 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=101.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCChh----
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHA---- 86 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh~---- 86 (593)
...|+++|.+|||||||+++|+......... .+.|.......+.. +...+.++|+||..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~y----------------pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADY----------------PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS 221 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCC----------------CCceeCceEEEEEeCCCcEEEEEeCCCccCCCC
Confidence 3479999999999999999998643221111 13455555444555 45679999999953
Q ss_pred ---hhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy8869 87 ---DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (593)
Q Consensus 87 ---~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~ 157 (593)
.+...++..+..+|++++|+|+++.. ..+.......+.. .+.|.+ +++||+|+.+.+...+. ....+
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~I-IV~NKiDL~~~~~~~~~---~~~~~ 297 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRI-LVLNKIDLLDEEEEREK---RAALE 297 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeE-EEEECcccCCchhHHHH---HHHHH
Confidence 23445566677899999999998633 2222222233322 256755 46799999865332211 22222
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++.. ..+++++||+++ .++++|+++|.+.+.
T Consensus 298 ~~~~-----~~~i~~iSAktg----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 298 LAAL-----GGPVFLISAVTG----------EGLDELLRALWELLE 328 (335)
T ss_pred HHhc-----CCCEEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 3322 367999999998 689999999987654
No 203
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=4.7e-15 Score=157.55 Aligned_cols=149 Identities=21% Similarity=0.205 Sum_probs=105.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH-
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI- 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~- 89 (593)
..++|+++|++|+|||||+++|++..... .....|.|.+.....+..++..+.+|||||+.++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI---------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 45899999999999999999998532100 01133667776666677788899999999986542
Q ss_pred -------HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 90 -------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 90 -------~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
..+...+..+|++++|+|++++...+..+.+.. ..+.|. ++++||+|+.+..... .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~pi-iiV~NK~DL~~~~~~~-----------~--- 341 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPV-IVVLNKADLTGEIDLE-----------E--- 341 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCc-EEEEEhhhccccchhh-----------h---
Confidence 223446778999999999988665444433332 346674 4568999997642210 1
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. ...+++++||++| .++++|+++|...++
T Consensus 342 ~--~~~~~i~iSAktg----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 342 E--NGKPVIRISAKTG----------EGIDELREAIKELAF 370 (449)
T ss_pred c--cCCceEEEEeeCC----------CCHHHHHHHHHHHHh
Confidence 1 2467999999998 689999999987664
No 204
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.61 E-value=8.8e-15 Score=120.59 Aligned_cols=91 Identities=42% Similarity=0.783 Sum_probs=82.6
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeC
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 382 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~ 382 (593)
+++.|+|++.||++..+++..+|..||++.+|+++.+..|++....+++.+.+||.+.|+|+|.+|+++++++||+||++
T Consensus 2 ~~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~ 81 (93)
T cd03706 2 PHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDG 81 (93)
T ss_pred cceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeCCEEEEEEC
Confidence 46899999999998655556799999999999999999999987777888999999999999999999999999999999
Q ss_pred CeEEEeeeecc
Q psy8869 383 VQQFIQDNLLT 393 (593)
Q Consensus 383 ~~~i~~G~v~~ 393 (593)
++|+|+|.|+.
T Consensus 82 ~~tvg~G~V~~ 92 (93)
T cd03706 82 NRTIGTGLVTD 92 (93)
T ss_pred CEEEEEEEEEe
Confidence 99999998753
No 205
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.61 E-value=1.8e-14 Score=134.19 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=97.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..|+|||||+.++...... .+....+..+.. ..+..++ ..+.||||||+++|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~----------------~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP----------------SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhh
Confidence 68999999999999999999853110 000001111111 1223333 5677999999999987
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHH-HHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHH---------HHHHHH
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLELVE---------IEIREL 157 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e-~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~---------~~~~~~ 157 (593)
.+...+..+|++++|+|.++... ....+ ++..+.. .++| +|++.||+|+.+.++..+.+. .+..++
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHH
Confidence 77777889999999999987432 22222 3333332 2566 555689999865432222111 122233
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+..+ ..+++++||++| .++.++++.+..
T Consensus 144 a~~~~----~~~~~e~SA~tg----------~~v~~~f~~~~~ 172 (175)
T cd01874 144 ARDLK----AVKYVECSALTQ----------KGLKNVFDEAIL 172 (175)
T ss_pred HHHhC----CcEEEEecCCCC----------CCHHHHHHHHHH
Confidence 33322 368999999998 688888887754
No 206
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.61 E-value=1.5e-14 Score=134.29 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=99.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.++|+++|..|+|||||+.++....... .+ ....+... .....+......+.||||||+++|...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~------------~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD------------YH--DPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC------------Cc--CCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 3789999999999999999987532100 00 00001001 011122222346789999999999888
Q ss_pred HHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
+...+..+|++++|+|.++...-+ ..+.+..+.. .++| ++++.||+|+.+..... ..+..++.+..
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~a~~~----- 137 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQVT---TEEGRNLAREF----- 137 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCccC---HHHHHHHHHHh-----
Confidence 888889999999999998844322 2222222222 3577 45567999986431111 11223344433
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+++++++||++| .++++++++|...+
T Consensus 138 ~~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 163 (172)
T cd04141 138 NCPFFETSAALR----------HYIDDAFHGLVREI 163 (172)
T ss_pred CCEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 468999999998 68888888887543
No 207
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=1.4e-14 Score=131.79 Aligned_cols=154 Identities=24% Similarity=0.250 Sum_probs=102.6
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChhhhH------
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADYI------ 89 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~~~~------ 89 (593)
++|++|+|||||+++|++..... .....+.|.......+... ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999998542211 1112234444444444433 6789999999976653
Q ss_pred -HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 90 -KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 90 -~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
..+...+..+|.+++|+|+...........+......++|. ++++||+|+........... ..... .......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~~~~~~~~~~~--~~~~~---~~~~~~~ 139 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPV-LLVLNKIDLLPEEEEEELLE--LRLLI---LLLLLGL 139 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeE-EEEEEccccCChhhHHHHHH--HHHhh---cccccCC
Confidence 33444667999999999999977666665566666678885 55689999987643222211 01111 1122468
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
|++++|++++ .++.++++++.+.
T Consensus 140 ~~~~~sa~~~----------~~v~~l~~~l~~~ 162 (163)
T cd00880 140 PVIAVSALTG----------EGIDELREALIEA 162 (163)
T ss_pred ceEEEeeecc----------CCHHHHHHHHHhh
Confidence 9999999997 6888999888653
No 208
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=1.2e-14 Score=133.09 Aligned_cols=154 Identities=21% Similarity=0.158 Sum_probs=98.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee--CCeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..|+|||||+++|....... .....++.......+.. ....+.+||+||++.|..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE----------------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 489999999999999999998542110 00111112222222222 234678999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCCh-hhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.....+..+|++++|+|++++... +....+..+.. .++| ++++.||+|+.+..... ..++.++.+..
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~----- 135 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVS---KSEAEEYAKSV----- 135 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC---HHHHHHHHHHc-----
Confidence 777778899999999999874332 22222222222 2566 45567999987532111 12233344433
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
..+++++|++++ .++.++++++.+.
T Consensus 136 ~~~~~~~s~~~~----------~gi~~~~~~l~~~ 160 (162)
T cd04123 136 GAKHFETSAKTG----------KGIEELFLSLAKR 160 (162)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 367899999998 6899999988654
No 209
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.6e-14 Score=149.78 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=102.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD---- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~---- 87 (593)
..|+++|.+|||||||+++|+........ ..++|.......+...+ ..+.|+||||..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~----------------~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVAD----------------YPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccC----------------CCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 37999999999999999999864321111 12345444444455544 4699999999532
Q ss_pred ---hHHHHHHhhhcCCEEEEEEECCC----CCChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 88 ---YIKNMITGAAQMDGAILVCSAAD----GPMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 88 ---~~~~~~~~~~~~d~~ilVvda~~----g~~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
....++..+..+|++++|+|++. ....+....+..+.. .+.|.++ ++||+|+.+.++..+ .+.
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~Il-VlNKiDl~~~~el~~----~l~ 298 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWL-VFNKIDLLDEEEAEE----RAK 298 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEE-EEeCCccCChHHHHH----HHH
Confidence 34455667789999999999872 222222333333333 2567555 679999987543322 233
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+.+.++. ..+++++||+++ .++++|++.|...++
T Consensus 299 ~l~~~~~~---~~~Vi~ISA~tg----------~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 299 AIVEALGW---EGPVYLISAASG----------LGVKELCWDLMTFIE 333 (390)
T ss_pred HHHHHhCC---CCCEEEEECCCC----------cCHHHHHHHHHHHhh
Confidence 33333332 247999999998 689999999988775
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=2.9e-14 Score=160.33 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=116.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh---
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA--- 86 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~--- 86 (593)
....+|+++|++|+|||||+++|++..... .+...|+|.+......++++..+.+|||||..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i---------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~ 337 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAV---------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 337 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCcee---------------ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC
Confidence 445789999999999999999998532110 11234788887777778888899999999964
Q ss_pred -----hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 87 -----DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 87 -----~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
.+...+..++..+|++|+|+|++++......+.+..+...+.|.++ ++||+|+..... ...++. .+
T Consensus 338 ~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIl-V~NK~D~~~~~~-------~~~~~~-~l 408 (712)
T PRK09518 338 EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVL-AVNKIDDQASEY-------DAAEFW-KL 408 (712)
T ss_pred ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEE-EEECcccccchh-------hHHHHH-Hc
Confidence 3556666778899999999999998877777777788888999555 579999865321 111221 22
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
++. ..+++||++| .|+.+|+++|...++.
T Consensus 409 g~~----~~~~iSA~~g----------~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 409 GLG----EPYPISAMHG----------RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCC----CeEEEECCCC----------CCchHHHHHHHHhccc
Confidence 332 2479999998 6899999999887754
No 211
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.60 E-value=1.8e-14 Score=146.49 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=97.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhh---
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD--- 87 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~--- 87 (593)
...|+++|.+|||||||+++|+......... ...|.......++.++ ..+.|+|+||..+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y----------------~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADY----------------PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGAS 220 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCC----------------CCCccCCEEEEEEeCCceEEEEEeCCCcccCCc
Confidence 4589999999999999999998643211111 1233333333344455 7899999999632
Q ss_pred ----hHHHHHHhhhcCCEEEEEEECCCCC----ChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHH
Q psy8869 88 ----YIKNMITGAAQMDGAILVCSAADGP----MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEI 154 (593)
Q Consensus 88 ----~~~~~~~~~~~~d~~ilVvda~~g~----~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~ 154 (593)
....+...+..+|++++|+|+++.. ..+.......+.. .+.|.+ |++||+|+.+.+. .+.+ .
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I-IV~NK~DL~~~~~-~~~~---~ 295 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI-VVLNKIDLLDEEE-LAEL---L 295 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE-EEEeCccCCChHH-HHHH---H
Confidence 3344555567899999999998631 1111111122221 356755 5679999987532 2222 2
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+.+.+.+ ..+++++||+++ .++++|+++|.+.+
T Consensus 296 ~~l~~~~-----~~~vi~iSAktg----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 296 KELKKAL-----GKPVFPISALTG----------EGLDELLYALAELL 328 (329)
T ss_pred HHHHHHc-----CCcEEEEEccCC----------cCHHHHHHHHHHHh
Confidence 2233322 257999999998 68999999987654
No 212
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.60 E-value=9.8e-15 Score=135.78 Aligned_cols=158 Identities=21% Similarity=0.180 Sum_probs=111.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|..|||||||+++|...... ....|.......+..++..+.+||.+|+..+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-------------------~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-------------------ETIPTIGFNIEEIKYKGYSLTIWDLGGQESF 71 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-------------------EEEEESSEEEEEEEETTEEEEEEEESSSGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-------------------ccCcccccccceeeeCcEEEEEEeccccccc
Confidence 478899999999999999999999732100 0112323334456668889999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++|+|||+++. ...+.++.+..+.. .++|.+ |+.||+|+.+... . .++.+.+....+
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL-Il~NK~D~~~~~~-~----~~i~~~l~l~~l 145 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL-ILANKQDLPDAMS-E----EEIKEYLGLEKL 145 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE-EEEESTTSTTSST-H----HHHHHHTTGGGT
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEE-EEeccccccCcch-h----hHHHhhhhhhhc
Confidence 88888889999999999999873 23455555544333 257754 5679999876411 1 133333332223
Q ss_pred C-CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 P-GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~-~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
. ...+.++.+||.+| .|+.+.+++|.+.
T Consensus 146 ~~~~~~~v~~~sa~~g----------~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 KNKRPWSVFSCSAKTG----------EGVDEGLEWLIEQ 174 (175)
T ss_dssp TSSSCEEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred ccCCceEEEeeeccCC----------cCHHHHHHHHHhc
Confidence 2 45788999999998 7899999998753
No 213
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.60 E-value=1.3e-14 Score=133.33 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=98.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+|+|||||+++|+.......... ..+... .....+......+.+||+||+.+|....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEP--------------TKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCC--------------cchhhE-EEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 4899999999999999999985421110000 000000 0111222234568899999999999888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHH-HHH---HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHIL-LAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~-~~~---~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...++.+|++++|+|..+... ....+.+. +.. ..++|. ++++||+|+.+.... -..+...+.+.+ .
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~D~~~~~~~---~~~~~~~~~~~~-----~ 136 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL-LLVGNKCDLEDKRQV---SSEEAANLARQW-----G 136 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEcccccccccc---CHHHHHHHHHHh-----C
Confidence 888999999999999876321 11122221 222 246785 456799998762111 011223333333 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.|++++||++| .++.++++.+.+.+
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 161 (164)
T cd04139 137 VPYVETSAKTR----------QNVEKAFYDLVREI 161 (164)
T ss_pred CeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999998 78999999887643
No 214
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.4e-14 Score=137.42 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=100.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee---CCeEEEEEecCChhhh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET---KARHYAHVDCPGHADY 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~~~iiDtpGh~~~ 88 (593)
.++|+++|..|+|||||+++|++..... .....++.+.....++. ....+.+|||||+++|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~----------------~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE----------------VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH
Confidence 5899999999999999999998532100 00111222222222222 2346789999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH-c--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-V--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~-l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
.......+..+|++++|+|.++.. +....+.+..+.. . ..+.++|+.||+|+.+..... ..+...+.+..
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~--- 139 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDL--- 139 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHh---
Confidence 888888889999999999998732 1222223333322 1 223355567999987632211 11233444433
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .+++++++.|.+.+
T Consensus 140 --~~~~~e~Sak~g----------~~v~e~f~~l~~~~ 165 (211)
T cd04111 140 --GMKYIETSARTG----------DNVEEAFELLTQEI 165 (211)
T ss_pred --CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 67888888887644
No 215
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.60 E-value=1.5e-14 Score=134.60 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=96.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|+.++|||||++++.+...... .. ....+.....+..+ ...+.+|||||+.+|..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~----------------~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE----------------YV-PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----------------CC-CceeeeeEEEEEECCEEEEEEEEeCCCcccccc
Confidence 5899999999999999999975321000 00 00111111122233 34567999999999987
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhH-H-HHHHHH--HcCCCeEEEEEeecCCCCHHHHHHHH---------HHHHHHH
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTR-E-HILLAR--QVGVPYIVVFLNKADMVDDEELLELV---------EIEIREL 157 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~-e-~l~~~~--~l~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~~~~ 157 (593)
.....+..+|++++|+|..+...-+.. + .+..+. ..++|. +++.||+|+.+.....+.+ ..+...+
T Consensus 64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~pi-ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (174)
T cd04135 64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPY-LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL 142 (174)
T ss_pred cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 777777899999999999874321111 1 122222 246775 4567999986542211111 1233444
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+.++ ..+++.+||++| .+++++++.+..
T Consensus 143 ~~~~~----~~~~~e~Sa~~~----------~gi~~~f~~~~~ 171 (174)
T cd04135 143 AKEIG----AHCYVECSALTQ----------KGLKTVFDEAIL 171 (174)
T ss_pred HHHcC----CCEEEEecCCcC----------CCHHHHHHHHHH
Confidence 44443 247999999998 689999988764
No 216
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=1.8e-14 Score=135.95 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=98.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..++|||||+++|++..... ......|.+.......+......+.+|||||+++|...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE--------------STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 479999999999999999998432100 001111222222223332233456799999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
...+..+|++++|+|+++... ....+.+..+..+ ..| ++++.||+|+.+....... +...+.+.. .+
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~~---~~~~~~~~~-----~~ 137 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDSN---IAKSFCDSL-----NI 137 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCHH---HHHHHHHHc-----CC
Confidence 888899999999999987322 2222233333332 345 5667899998753211111 122233332 35
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+++.+||++| .+++++++.|...+
T Consensus 138 ~~~evSa~~~----------~~i~~~f~~l~~~~ 161 (188)
T cd04125 138 PFFETSAKQS----------INVEEAFILLVKLI 161 (188)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999998 57878777766543
No 217
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=2.8e-14 Score=135.73 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=96.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~~ 91 (593)
+|+++|+.|+|||||+++|+....... ....+.+.....+...+ ..+.|||+||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-----------------YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------CCCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 589999999999999999975421100 00000111112233333 56789999999999877
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
....+..+|++++|+|+++... ......+..+.. .++|.+ +++||+|+...+..... .+..+... .. .
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~~v~~--~~~~~~~~-~~---~ 136 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV-VVGNKADSLEEERQVPA--KDALSTVE-LD---W 136 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEccccccccccccH--HHHHHHHH-hh---c
Confidence 7777889999999999987322 112212122222 367755 56799998753111110 01111111 11 2
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+++++||++| .++++++++|...+.
T Consensus 137 ~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDN----------ENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 467999999998 789999999887654
No 218
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.60 E-value=6.4e-15 Score=118.64 Aligned_cols=82 Identities=40% Similarity=0.743 Sum_probs=77.6
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccc
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G 292 (593)
|+|+|+++|++++.|+++.|+|++|++++||++.+.|.+ ..++|++|+.++.++++|.|||.|+++|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 689999999999999999999999999999999999854 679999999999999999999999999999888899999
Q ss_pred eEEe
Q psy8869 293 QVLA 296 (593)
Q Consensus 293 ~vl~ 296 (593)
++|+
T Consensus 79 ~vl~ 82 (83)
T cd03696 79 DVLS 82 (83)
T ss_pred cEEc
Confidence 9997
No 219
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=8.9e-15 Score=135.43 Aligned_cols=162 Identities=18% Similarity=0.071 Sum_probs=99.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|..|+|||||++++++..... .......+.........+......+.+||++|.+.|.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~-------------~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL-------------NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCc-------------ccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc
Confidence 578999999999999999999998532110 0000111111212222222233567899999999987
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH-cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~-l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
......+..+|++++|+|+++... ....+.+..... .++| +++++||+|+.+..... ..+..++.+.++.
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~~~---- 140 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRY---EVQPDEFCRKLGL---- 140 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccccccc---ccCHHHHHHHcCC----
Confidence 777777789999999999977321 111122222211 2577 45568999986532111 1122344444443
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++++||++| .+++++++.|.+.+
T Consensus 141 ~~~~~~Sa~~~----------~~v~~lf~~l~~~~ 165 (169)
T cd01892 141 PPPLHFSSKLG----------DSSNELFTKLATAA 165 (169)
T ss_pred CCCEEEEeccC----------ccHHHHHHHHHHHh
Confidence 13589999998 68899999887754
No 220
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=3e-14 Score=132.48 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=98.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceE-Ee--eeeEEeeCCeEEEEEecCChhhh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITI-NT--AHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~--~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
+++|+++|..++|||||+.++....... +. ..|+ +. ....++.....+.||||||+++|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~----------------~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPG----------------EY--IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 62 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCC----------------cC--CCcceeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 4789999999999999999987531100 00 0111 11 11122223356779999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhh-H-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------HHHHH
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEIR 155 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt-~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~~ 155 (593)
...+...+..+|++|+|+|.++...-+. . .++..+... ++| ++++.||+|+.+.....+.+ ..+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 63 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 8877778889999999999987332222 1 233333322 467 45567999996532111111 12333
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++.+.++ .++++++||++| .+++++++.+.+
T Consensus 142 ~~~~~~~----~~~~~e~Sa~~~----------~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIG----AVKYLECSALTQ----------KGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcC----CcEEEEeccccc----------CCHHHHHHHHHH
Confidence 4444443 358999999998 689999988764
No 221
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.59 E-value=2.5e-14 Score=131.37 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..++|||||+.+++..... .+....+..+.....+..++ ..+.+||+||+++|..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH----------------SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh
Confidence 47999999999999999999743110 00111222222222333333 4577999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.+...+..+|++++|+|.++.. +......+..+... ++| ++++.||+|+........ .+...+.+..
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~---~~~~~~~~~~----- 135 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGD---EQGNKLAKEY----- 135 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCH---HHHHHHHHHc-----
Confidence 8878888999999999998732 12222222222222 456 445579999875421111 1223333332
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.++++++||++| .++.++++.|.+
T Consensus 136 ~~~~~e~Sa~~~----------~~v~~~f~~l~~ 159 (161)
T cd04117 136 GMDFFETSACTN----------SNIKESFTRLTE 159 (161)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHh
Confidence 368999999998 688999988865
No 222
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.59 E-value=7.5e-14 Score=131.89 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=100.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee---eeEEeeCCeEEEEEecCChhhh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA---HIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~---~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++|+++|..++|||||+.++...... .+. -.|+... ...++.....+.+|||||+++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~----------------~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP----------------KEY--IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC----------------cCC--CCceEeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 489999999999999999999853110 000 1122111 1122222345779999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHH-HHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHH---------HHHHH
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIR 155 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e-~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~~ 155 (593)
.......++.+|++|+|+|.++... ..... .+..+.. .++|.+ ++.||+|+.+.....+.+ ..+..
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~pii-lvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPIL-LVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 9888778889999999999987322 11211 1222221 367754 567999996532211111 11233
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
++.+..+ ..+++.+||++| .++.++++.+.+.+-.
T Consensus 144 ~~a~~~~----~~~~~e~SAk~g----------~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 144 ALAKQIH----AVKYLECSALNQ----------DGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHcC----CcEEEEeCCCCC----------CCHHHHHHHHHHHHhc
Confidence 3444332 258999999998 6888999888765433
No 223
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=3.4e-14 Score=149.73 Aligned_cols=157 Identities=23% Similarity=0.267 Sum_probs=101.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh---
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD--- 87 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~--- 87 (593)
-...|+++|.+|||||||+++|+........ ..+.|.......++..+..++|+|+||..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIad----------------ypfTTl~P~lGvv~~~~~~f~laDtPGliegas 221 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIAD----------------YPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS 221 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccc----------------cCcccccceEEEEEECCeEEEEEECCCCccccc
Confidence 3458999999999999999999864322111 124565555555667778899999999421
Q ss_pred ----hHHHHHHhhhcCCEEEEEEECCCC-----CChh---hHHHH-HHH----------HHcCCCeEEEEEeecCCCCHH
Q psy8869 88 ----YIKNMITGAAQMDGAILVCSAADG-----PMPQ---TREHI-LLA----------RQVGVPYIVVFLNKADMVDDE 144 (593)
Q Consensus 88 ----~~~~~~~~~~~~d~~ilVvda~~g-----~~~q---t~e~l-~~~----------~~l~ip~iiVvvNK~Dl~~~~ 144 (593)
.....+..+..+|++|+|||+++. ...+ ..+.| .+. ...+.|.+ |++||+|+.+..
T Consensus 222 ~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I-VVlNKiDL~da~ 300 (500)
T PRK12296 222 EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL-VVLNKIDVPDAR 300 (500)
T ss_pred hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE-EEEECccchhhH
Confidence 123345556789999999999741 1111 11112 121 12357755 568999998654
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+..+.+ ...++.. .++++++||+++ .++.+|+++|.+.+.
T Consensus 301 el~e~l----~~~l~~~-----g~~Vf~ISA~tg----------eGLdEL~~~L~ell~ 340 (500)
T PRK12296 301 ELAEFV----RPELEAR-----GWPVFEVSAASR----------EGLRELSFALAELVE 340 (500)
T ss_pred HHHHHH----HHHHHHc-----CCeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 333332 2233322 357999999998 689999988877654
No 224
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=2.4e-14 Score=138.15 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=100.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|..|+|||||+.+++...... ..+..-|.+.....+........+.+|||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~--------------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCC--------------ccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 567899999999999999999987431110 011112223222222222234577899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
..+...++.+|++|+|+|.++...-+ ....+..+.. .++|.+ ++.||+|+.+.....+ ++ .+.+. .
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pii-lvgNK~Dl~~~~v~~~----~~-~~~~~-----~ 145 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAK----QV-TFHRK-----K 145 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEEchhhhhccCCHH----HH-HHHHh-----c
Confidence 77777788999999999998743222 2222222222 357754 4579999864311111 12 22222 2
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++.+++++|...+
T Consensus 146 ~~~~~e~SAk~~----------~~i~~~f~~l~~~~ 171 (219)
T PLN03071 146 NLQYYEISAKSN----------YNFEKPFLYLARKL 171 (219)
T ss_pred CCEEEEcCCCCC----------CCHHHHHHHHHHHH
Confidence 468999999998 68888888887654
No 225
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.59 E-value=6.2e-14 Score=132.97 Aligned_cols=156 Identities=19% Similarity=0.080 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhhH-
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADYI- 89 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~~- 89 (593)
++|+++|..|+|||||++++++.... .+....++.+.....+..++ ..+.||||||+.+|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~----------------~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP----------------EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC----------------cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 48999999999999999999853110 00011111111111222333 567799999976542
Q ss_pred -------HHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 90 -------KNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 90 -------~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
......+..+|++++|+|+++...-+ ....+..+.. .++|.+ ++.||+|+....... ..++.
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii-ivgNK~Dl~~~~~~~---~~~~~ 140 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV-VVGNKRDQQRHRFAP---RHVLS 140 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE-EEEECcccccccccc---HHHHH
Confidence 11334467899999999998743211 1212222221 357755 467999996531111 11233
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+.+.. ..++++++||++| .++.+|++.+...+
T Consensus 141 ~~~~~~----~~~~~~e~Sak~g----------~~v~~lf~~i~~~~ 173 (198)
T cd04142 141 VLVRKS----WKCGYLECSAKYN----------WHILLLFKELLISA 173 (198)
T ss_pred HHHHHh----cCCcEEEecCCCC----------CCHHHHHHHHHHHh
Confidence 333321 2578999999998 67888888876543
No 226
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=1.6e-14 Score=133.04 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=96.9
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHH
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMIT 94 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~ 94 (593)
|+++|..|+|||||+++|.+..... .. ..|+......+...+..+.+||+||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~--------------~~----~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE--------------SV----VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc--------------cc----cccCCcceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 7899999999999999998531100 00 01111112334556778999999999999888888
Q ss_pred hhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHH--HHHHHhhcCCCCCCce
Q psy8869 95 GAAQMDGAILVCSAADGP-MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIE--IRELLNKYEFPGNDIP 169 (593)
Q Consensus 95 ~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 169 (593)
.+..+|++++|+|+++.. ....++.+..+.. -++|. +++.||+|+.+.. ..+.+... +..+.+ ...++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~pi-ilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~-----~~~~~ 136 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPL-VVLANKQDLPAAR-SVQEIHKELELEPIAR-----GRRWI 136 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcE-EEEEeCcCCcCCC-CHHHHHHHhCChhhcC-----CCceE
Confidence 899999999999998743 2223333333322 36774 5567999987642 11111111 122211 23578
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
++++||++.-+. ..++++.++++.|.
T Consensus 137 ~~~~Sa~~~~s~----~~~~~v~~~~~~~~ 162 (164)
T cd04162 137 LQGTSLDDDGSP----SRMEAVKDLLSQLI 162 (164)
T ss_pred EEEeeecCCCCh----hHHHHHHHHHHHHh
Confidence 999999872110 01157788877664
No 227
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=3.3e-14 Score=134.20 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=99.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe-eeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.+|+++|..|+|||||+.++++..... +....+.... .....+.....+.||||||+++|...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~----------------~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ----------------VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----------------ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccc
Confidence 379999999999999999998532110 0000011111 11112222356789999999999776
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhH--HHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHH---------HHHHHHHHH
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKADMVDDEELLEL---------VEIEIRELL 158 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~--e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~---------~~~~~~~~l 158 (593)
+...+..+|++++|+|.++...-+.. ..+..+.. .++| ++++.||+|+.+.....+. ...+..++.
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 66677899999999999874322222 12333333 2567 5556799999764221111 011223333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+..+ .++++++||++| .++++++++|...+..
T Consensus 144 ~~~~----~~~~~e~SAk~~----------~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 144 KRIN----ALRYLECSAKLN----------RGVNEAFTEAARVALN 175 (189)
T ss_pred HHcC----CCEEEEccCCcC----------CCHHHHHHHHHHHHhc
Confidence 3322 368999999998 6899999988765543
No 228
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=3.5e-14 Score=136.21 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=99.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..++|+++|+.++|||||+++|+....... ....-+.+.......+......+.+|||||+++|..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~--------------~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 458999999999999999999985421100 001112222222223322234577999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.+...+..+|++++|+|+++... ....+.+..+.. ..+| ++++.||+|+.+..... ..+..++++..
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~----- 141 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEH----- 141 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCCC---HHHHHHHHHHc-----
Confidence 88888889999999999987322 222222322222 2566 45567999987531110 12334444443
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||+++ .++.++++++...+
T Consensus 142 ~~~~~e~Sa~~~----------~~v~e~f~~l~~~~ 167 (210)
T PLN03108 142 GLIFMEASAKTA----------QNVEEAFIKTAAKI 167 (210)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 57777776665433
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=9.4e-14 Score=127.95 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=101.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh-------
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------- 87 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~------- 87 (593)
|+++|+.|+|||||++.|++..... ..+...+.|........ + ..+.++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~--------------~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA--------------RTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee--------------eecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHH
Confidence 8999999999999999998421100 00112234444333322 2 2789999999543
Q ss_pred ---hHHHH---HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 88 ---YIKNM---ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 88 ---~~~~~---~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
+...+ +......+.+++|+|+.........+.+..+...+.|. ++++||+|+.+.++. ......+...++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~v-i~v~nK~D~~~~~~~-~~~~~~~~~~l~~~ 142 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPF-LVVLTKADKLKKSEL-AKALKEIKKELKLF 142 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCE-EEEEEchhcCChHHH-HHHHHHHHHHHHhc
Confidence 22222 22223568899999998876666666777888888884 456799999765332 22333444444421
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
. ...+++++|++++ .++.+++++|.++
T Consensus 143 -~--~~~~~~~~Sa~~~----------~~~~~l~~~l~~~ 169 (170)
T cd01876 143 -E--IDPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred -c--CCCceEEEecCCC----------CCHHHHHHHHHHh
Confidence 1 2478999999997 6889999988764
No 230
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.58 E-value=2.3e-14 Score=117.43 Aligned_cols=89 Identities=67% Similarity=1.137 Sum_probs=81.2
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeC
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREG 382 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~ 382 (593)
++..|+|++.+|++..+++..+|..||++.+|+|+.+..|++....+++.+++||.+.|+|++.+|+++++++||+||++
T Consensus 2 ~~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~~rf~lR~~ 81 (90)
T cd03707 2 PHTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKGLRFAIREG 81 (90)
T ss_pred ceeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecCCEEEEecC
Confidence 36889999999997544445789999999999999999999988888888999999999999999999999999999999
Q ss_pred CeEEEeeee
Q psy8869 383 VQQFIQDNL 391 (593)
Q Consensus 383 ~~~i~~G~v 391 (593)
++|+|+|.|
T Consensus 82 ~~tig~G~V 90 (90)
T cd03707 82 GRTVGAGVI 90 (90)
T ss_pred CcEEEEEEC
Confidence 999999965
No 231
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.58 E-value=2.3e-14 Score=132.60 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=97.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|.+|+|||||++++.+..... ..+. ..+... .....+......+.+|||||+++|...+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~---------~~~~-----t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE---------SYDP-----TIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---------ccCC-----cchheE-EEEEEECCEEEEEEEEeCCCcccchhhh
Confidence 689999999999999999997432100 0000 001110 1112222233467899999999999888
Q ss_pred HHhhhcCCEEEEEEECCCCCCh-hhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPMP-QTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~-qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...+..+|++++|+|.++...- ....+...+. ..++|.++ +.||+|+.+..... ..+...+.+..+ .
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piii-v~nK~D~~~~~~~~---~~~~~~~~~~~~----~ 138 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVL-VGNKADLEDDRQVS---REDGVSLSQQWG----N 138 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEE-EEEChhccccCccC---HHHHHHHHHHcC----C
Confidence 8888899999999999873221 1111222222 23678554 67999987542111 112233333332 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+|++++||++| .+++++++++...+
T Consensus 139 ~~~~~~SA~~~----------~~i~~~f~~i~~~~ 163 (168)
T cd04177 139 VPFYETSARKR----------TNVDEVFIDLVRQI 163 (168)
T ss_pred ceEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 78999999998 68888888887543
No 232
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=2.9e-14 Score=134.32 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=97.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee-eeEEe-eCCeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYE-TKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~-~~~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..|+|||||+++|.+..... +....+..+.. ..... .....+.||||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE----------------EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC----------------CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH
Confidence 489999999999999999998532110 00001111111 11111 1234678999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChh-hHH-HHHHHHH--cCCCeEEEEEeecCCCCHHHHH-HHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQ-TRE-HILLARQ--VGVPYIVVFLNKADMVDDEELL-ELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~q-t~e-~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~-~~~~~~~~~~l~~~~~~~ 165 (593)
.....+..+|++++|+|+++...-+ ... ++..... .++|. |++.||+|+.+..... .....+..++....+.
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPI-MLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 8877888999999999998733222 111 2222221 35774 5567999986531100 0011234444544432
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++++||++| .++.++++.+...+
T Consensus 142 --~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 166 (187)
T cd04132 142 --FAYLECSAKTM----------ENVEEVFDTAIEEA 166 (187)
T ss_pred --cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 37999999998 67888888776543
No 233
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.57 E-value=4e-14 Score=131.69 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=95.9
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEE-eeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
|+++|..++|||||++++.+..... +....+... .....+......+.+|||||+++|.....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE----------------DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 5899999999999999998532100 000001101 11112222234578999999999987777
Q ss_pred HhhhcCCEEEEEEECCCCCC-hhhHH-HHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHH---------HHHHHHHHhh
Q psy8869 94 TGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLNK 160 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~-~qt~e-~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 160 (593)
..+..+|++++|+|.++... ..... .+..+.. .++| ++++.||+|+.+.....+.+ ..+...+.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 77889999999999987321 11111 2222322 2677 45567999987532211111 1233445554
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+. .+++++||++| .+++++++.+...
T Consensus 144 ~~~----~~~~e~Sa~~~----------~~v~~lf~~l~~~ 170 (174)
T smart00174 144 IGA----VKYLECSALTQ----------EGVREVFEEAIRA 170 (174)
T ss_pred cCC----cEEEEecCCCC----------CCHHHHHHHHHHH
Confidence 432 47999999998 6899999887654
No 234
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.57 E-value=3e-14 Score=132.37 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=100.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|+.++|||||+.++....... ..+..-|.+.. ....++.....+.||||+|+++|...+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~--------------~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT--------------DYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--------------CCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccc
Confidence 689999999999999999998532100 00011111111 112222233567899999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhh-HHHHHHHHH--cCCCeEEEEEeecCCCCHHHH-------HHHHHHHHHHHHhhc
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQT-REHILLARQ--VGVPYIVVFLNKADMVDDEEL-------LELVEIEIRELLNKY 161 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt-~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~-------~~~~~~~~~~~l~~~ 161 (593)
...++.+|++|||+|.++... ... ...+..+.. -++| +|++.||+|+.+.... .....++..++.+..
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 145 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI 145 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc
Confidence 888899999999999987332 222 223333332 2566 5556799999653110 001122444555543
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+. .+++.+||++| .+++++++.+.+.+
T Consensus 146 ~~----~~~~E~SAk~~----------~nV~~~F~~~~~~~ 172 (176)
T cd04133 146 GA----AAYIECSSKTQ----------QNVKAVFDAAIKVV 172 (176)
T ss_pred CC----CEEEECCCCcc----------cCHHHHHHHHHHHH
Confidence 32 36999999998 68889998887643
No 235
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.57 E-value=3.5e-14 Score=138.99 Aligned_cols=161 Identities=18% Similarity=0.140 Sum_probs=99.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..|+|||||++++++...... + .... + ......+.+......+.||||+|+++|....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~------y---~pTi-----~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQ------Y---TPTI-----E-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCC------C---CCCh-----h-HhEEEEEEECCEEEEEEEEECCCChhhhHHH
Confidence 4799999999999999999985321100 0 0000 0 0111122222233567899999999997766
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH------------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ------------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~------------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
...+..+|++|+|+|.++... ......+..+.. .++| +|++.||+|+....+. ...++.+++.
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~v---~~~ei~~~~~ 141 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPREV---QRDEVEQLVG 141 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhcccc---CHHHHHHHHH
Confidence 666789999999999987321 111222222211 2567 4556899999752111 1123344433
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~ 206 (593)
.. ..++++++||++| .++++++++|......|.
T Consensus 142 ~~----~~~~~~evSAktg----------~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 142 GD----ENCAYFEVSAKKN----------SNLDEMFRALFSLAKLPN 174 (247)
T ss_pred hc----CCCEEEEEeCCCC----------CCHHHHHHHHHHHhcccc
Confidence 21 2468999999998 689999999987654343
No 236
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=2.8e-14 Score=132.82 Aligned_cols=149 Identities=23% Similarity=0.225 Sum_probs=93.9
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChhhh-------
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADY------- 88 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~~~------- 88 (593)
++|++|+|||||+++|++.... .....+.|.+.....+..+ +..+.+|||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK----------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc----------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 5899999999999999864210 0011234444444445556 788999999997432
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-------ChhhHHHHHHHH----------HcCCCeEEEEEeecCCCCHHHHHHHHH
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-------MPQTREHILLAR----------QVGVPYIVVFLNKADMVDDEELLELVE 151 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-------~~qt~e~l~~~~----------~l~ip~iiVvvNK~Dl~~~~~~~~~~~ 151 (593)
...+...+..+|++++|+|+.+.. ..+...+...+. ..+.|.+ +++||+|+.+.....+..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVI-YVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeE-EEEEchhcCchhHHHHHH-
Confidence 234456677899999999998752 122222222222 1367754 567999998753322211
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
...... ....+++++||+++ .++.++++.+..
T Consensus 143 --~~~~~~-----~~~~~~~~~Sa~~~----------~gl~~l~~~l~~ 174 (176)
T cd01881 143 --VRELAL-----EEGAEVVPISAKTE----------EGLDELIRAIYE 174 (176)
T ss_pred --HHHHhc-----CCCCCEEEEehhhh----------cCHHHHHHHHHh
Confidence 111111 12567999999998 688999988765
No 237
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=2.8e-14 Score=124.57 Aligned_cols=136 Identities=22% Similarity=0.240 Sum_probs=96.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----hhhhH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----HADYI 89 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----h~~~~ 89 (593)
+|.++|.++||||||+.+|.+... ....|..+.+ .+ .+||||| +..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--------------------~~~KTq~i~~-----~~---~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--------------------RYKKTQAIEY-----YD---NTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--------------------CcCccceeEe-----cc---cEEECChhheeCHHHH
Confidence 799999999999999999975311 1122222221 11 3699999 77778
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
+..+..+..||.+++|.||++... ..--.++..++.|. |=||||+|+.+.++..+ ..+++|+..|.. .
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pv-IGVITK~Dl~~~~~~i~----~a~~~L~~aG~~----~ 122 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPV-IGVITKIDLPSDDANIE----RAKKWLKNAGVK----E 122 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCE-EEEEECccCccchhhHH----HHHHHHHHcCCC----C
Confidence 888888889999999999997422 11223556677784 45689999994322222 456677777763 3
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
+|++|+.+| +|+++|.++|.
T Consensus 123 if~vS~~~~----------eGi~eL~~~L~ 142 (143)
T PF10662_consen 123 IFEVSAVTG----------EGIEELKDYLE 142 (143)
T ss_pred eEEEECCCC----------cCHHHHHHHHh
Confidence 699999998 79999999875
No 238
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.57 E-value=3.6e-14 Score=136.23 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=98.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..++|||||+++++..... . ...|+.............+.||||||++.|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~------------~-------~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK------------D-------TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC------------C-------CCCccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 57999999999999999999743110 0 0112222222223345678899999999998888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHH----------------HHHHHHHH
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDE----------------ELLELVEI 152 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~----------------~~~~~~~~ 152 (593)
...+..+|++|+|+|+++... ......+..+.. .++| +|++.||+|+.+.. ...+....
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHH
Confidence 888889999999999987322 222222222222 2456 55567999997510 00011112
Q ss_pred HHHHHHhhcCC---------CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 153 EIRELLNKYEF---------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 153 ~~~~~l~~~~~---------~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+...+.+..+- ....++++++||++| .+++++++.+.+.
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----------~~V~elf~~i~~~ 188 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----------YNVDELFEYLFNL 188 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 33344444321 011368999999998 6788888777643
No 239
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.57 E-value=4.4e-14 Score=149.15 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=94.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|++|+|||||+++|++..... .....|+|.+.....+..++..+.+|||||+.++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai---------------vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI---------------VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 356899999999999999999998531110 01124677777777777888899999999975432
Q ss_pred --------HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 90 --------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 90 --------~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
......+..+|++++|+|++++...+.. .+..+...+.|. |+++||+|+.+. + . ..+.+.+
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~pi-IlV~NK~Dl~~~-~----~----~~~~~~~ 334 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPF-ILVLNKIDLKIN-S----L----EFFVSSK 334 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCE-EEEEECccCCCc-c----h----hhhhhhc
Confidence 2234567789999999999886544433 444444457774 456899999753 1 1 1122222
Q ss_pred CCCCCCceEEEeccCc
Q psy8869 162 EFPGNDIPIIKGSAKL 177 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~ 177 (593)
..|++.+||++
T Consensus 335 -----~~~~~~vSak~ 345 (442)
T TIGR00450 335 -----VLNSSNLSAKQ 345 (442)
T ss_pred -----CCceEEEEEec
Confidence 35789999987
No 240
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.57 E-value=5.9e-14 Score=130.64 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=96.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
.+|+++|+.++|||||+.+|.+....... ....+... .....+......+.+|||||+++|....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY--------------VPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccccce-EEEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 58999999999999999999853211000 00001111 1122222233457899999999998776
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHH-HHHHHH--cCCCeEEEEEeecCCCCHHHHHHHH---------HHHHHHHHh
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREH-ILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIRELLN 159 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~-l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~~~~l~ 159 (593)
...+..+|++++|+|.++... ....+. +..+.. .++| ++++.||+|+.+.....+.+ ..+.+.+.+
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 667789999999999986321 121121 122222 2677 45567999987542221111 112233333
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
..+ ..+++++||++| .++++++++|..
T Consensus 146 ~~~----~~~~~~~Sa~~~----------~~v~~lf~~l~~ 172 (175)
T cd01870 146 KIG----AFGYMECSAKTK----------EGVREVFEMATR 172 (175)
T ss_pred HcC----CcEEEEeccccC----------cCHHHHHHHHHH
Confidence 332 357999999998 689999998865
No 241
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.56 E-value=3.9e-14 Score=136.85 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=95.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|..|+|||||+++++..... ....+...+.........+......+.||||||++.+....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-------------~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-------------DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-------------ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhH
Confidence 48999999999999999999743110 00001111111222223333345678899999998554332
Q ss_pred HHhhh-cCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 93 ITGAA-QMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 93 ~~~~~-~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.+. .+|++++|+|+++.. +....+.+..+.. .++|. |++.||+|+.+...... .+...+....
T Consensus 68 --~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl~~~~~v~~---~~~~~~a~~~----- 136 (221)
T cd04148 68 --CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPI-ILVGNKSDLARSREVSV---QEGRACAVVF----- 136 (221)
T ss_pred --HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhccccceecH---HHHHHHHHHc-----
Confidence 334 899999999998732 2222333333333 35774 55679999875422111 1122333322
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||+++ .++.++++++...+.
T Consensus 137 ~~~~~e~SA~~~----------~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQ----------HNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 367999999998 688999998876653
No 242
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.56 E-value=6.2e-14 Score=128.15 Aligned_cols=152 Identities=21% Similarity=0.189 Sum_probs=97.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~~ 91 (593)
+|+++|+.|+|||||+++|++..... . .... +.+.....+..+ ...+.+||+||+.+|...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~-~--------~~~~--------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVE-E--------YDPT--------IEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-C--------cCCC--------hhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 58999999999999999998542100 0 0000 001111122233 456789999999999888
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
....+..+|++++|+|.++... .+....+..+.. .+.| +++++||+|+.+.... ...+...+.+..+
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV---SKEEGKALAKEWG---- 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee---cHHHHHHHHHHcC----
Confidence 8888889999999999987321 222222222222 2566 5556899998863211 1123444444432
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.|++++|++++ .++.+++++|...
T Consensus 136 -~~~~~~S~~~~----------~~i~~l~~~l~~~ 159 (160)
T cd00876 136 -CPFIETSAKDN----------INIDEVFKLLVRE 159 (160)
T ss_pred -CcEEEeccCCC----------CCHHHHHHHHHhh
Confidence 68999999997 6899999988653
No 243
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.56 E-value=3.2e-14 Score=113.45 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=74.6
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccc
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G 292 (593)
|+|+|+++|+.++.|+.++|+|++|.+++||++.+.|.+ ..++|++|+.++.+++.|.|||+|+++|+ +..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--KTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--CeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCC
Confidence 689999999988888889999999999999999999864 67999999999999999999999999998 46789999
Q ss_pred eEEec
Q psy8869 293 QVLAK 297 (593)
Q Consensus 293 ~vl~~ 297 (593)
++||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99973
No 244
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=6.2e-14 Score=146.15 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=98.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHAD---- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~~---- 87 (593)
..|+++|.+|||||||+++|+......+. ..++|.......+..+ +..+.++|+||...
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~----------------ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~ 222 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIAN----------------YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE 222 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCcccc----------------CCcceeceEEEEEEEeCCceEEEEECCCCcccccc
Confidence 38999999999999999999964322111 1134555544445555 67899999999522
Q ss_pred ---hHHHHHHhhhcCCEEEEEEECCCC----CChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 88 ---YIKNMITGAAQMDGAILVCSAADG----PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 88 ---~~~~~~~~~~~~d~~ilVvda~~g----~~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
....++..+..+|++++|+|+++. ...+.......+.. .+.|.+| ++||+|+.+.++ .+.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IV-V~NK~DL~~~~e-------~l~ 294 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIV-VANKMDLPEAEE-------NLE 294 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEE-EEeCCCCcCCHH-------HHH
Confidence 234445556789999999999753 11222222222322 3677555 679999854322 222
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++.+.++ .+++++||+++ .++++|+++|.+.+.
T Consensus 295 ~l~~~l~-----~~i~~iSA~tg----------eGI~eL~~~L~~~l~ 327 (424)
T PRK12297 295 EFKEKLG-----PKVFPISALTG----------QGLDELLYAVAELLE 327 (424)
T ss_pred HHHHHhC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 3333332 47999999998 689999999877654
No 245
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.56 E-value=5.6e-14 Score=131.49 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=96.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
.+|+++|++|+|||||+++|+....... ..... +... ............+.+|||||+.+|....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~--------~~~t~------~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVES--------YYPTI------ENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc--------cCcch------hhhE-EEEEEECCEEEEEEEEECCChHhhHHHH
Confidence 6899999999999999999985321100 00000 0000 1111222223557899999999998877
Q ss_pred HHhhhcCCEEEEEEECCCCCChhh-HHHHH-HHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQT-REHIL-LARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt-~e~l~-~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...+..+|++++|+|.++....+. .+.+. ++.. .+.| +|+++||+|+........ .+...+.+.+ .
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~-----~ 137 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVST---EEGKELAESW-----G 137 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCH---HHHHHHHHHc-----C
Confidence 788889999999999987432222 22222 2222 3567 455689999874321111 1223333332 3
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+++++||+++ .++.++++++...+
T Consensus 138 ~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (180)
T cd04137 138 AAFLESSAREN----------ENVEEAFELLIEEI 162 (180)
T ss_pred CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 68999999997 67888888876543
No 246
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.55 E-value=4.1e-14 Score=130.45 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=91.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-HHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-IKNM 92 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~-~~~~ 92 (593)
+|+++|+.|+|||||+.++...... +. ...... +.......++.....+.+||+||+.++ ...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~---~~------~~~t~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI---GE------YDPNLE------SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc---cc------cCCChH------HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 5899999999999999998742110 00 000000 111111222222335779999999863 3445
Q ss_pred HHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
...+..+|++++|+|+++...-+ ....+..+.. .++|. +++.||+|+....... ..+...+.+..
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~~~~~~~~~~----- 136 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPV-ILVGNKADLLHYRQVS---TEEGEKLASEL----- 136 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCchHHhCccC---HHHHHHHHHHc-----
Confidence 56678999999999998743222 2222222232 26774 5567999986431111 11223333333
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
..+++++||++|. .+++++++.+...
T Consensus 137 ~~~~~e~Sa~~~~---------~~v~~~f~~l~~~ 162 (165)
T cd04146 137 GCLFFEVSAAEDY---------DGVHSVFHELCRE 162 (165)
T ss_pred CCEEEEeCCCCCc---------hhHHHHHHHHHHH
Confidence 3579999999872 3788999888754
No 247
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.55 E-value=6.3e-14 Score=142.84 Aligned_cols=154 Identities=25% Similarity=0.247 Sum_probs=114.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh---hh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---AD 87 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh---~~ 87 (593)
.-++++++|.||+|||||+|+|++...... .| -.|+|-|.-...+..++..+.++||+|- .+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV---------Td------I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d 280 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIV---------TD------IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD 280 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEe---------cC------CCCCccceEEEEEEECCEEEEEEecCCcccCcc
Confidence 458999999999999999999996533221 12 3489999988999999999999999993 33
Q ss_pred h-----HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 Y-----IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~-----~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
. +......+..||.+++|+|++++...+....+. +...+.| +++++||+|+.+.... ... .
T Consensus 281 ~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~--------~~~--~-- 346 (454)
T COG0486 281 VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIEL--------ESE--K-- 346 (454)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhccccccc--------chh--h--
Confidence 3 333455677999999999999976666666655 3444566 4556899999976321 000 1
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
. ....+++.+|+++| .|++.|.++|.+.+..
T Consensus 347 ~-~~~~~~i~iSa~t~----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 347 L-ANGDAIISISAKTG----------EGLDALREAIKQLFGK 377 (454)
T ss_pred c-cCCCceEEEEecCc----------cCHHHHHHHHHHHHhh
Confidence 1 12458999999998 7899999999887653
No 248
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.55 E-value=3.8e-14 Score=131.80 Aligned_cols=155 Identities=18% Similarity=0.138 Sum_probs=96.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee--eeEEeeCCeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
++++++|..++|||||+.++.+.... . +.. ....+.. ...++.....+.+|||||+++|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~------------~----~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP------------T----EYV-PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC------------C----CCC-CceeeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 57999999999999999988753110 0 000 1111111 122222235677999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChh-h-HHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHH--------H-HHHHHHHH
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQ-T-REHILLARQ--VGVPYIVVFLNKADMVDDEELLE--------L-VEIEIREL 157 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~q-t-~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~--------~-~~~~~~~~ 157 (593)
.....++.+|++|+|+|.++...-+ . ...+..+.. .++| ++++.||+|+.+...... . ...+...+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 7777788999999999998743221 1 222333332 2566 556689999875321100 0 11133344
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
.+..+ ..+++++||++| .+++++++.+.
T Consensus 143 a~~~~----~~~~~e~Sa~~~----------~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIG----ACEYIECSALTQ----------KNLKEVFDTAI 170 (173)
T ss_pred HHHhC----CCeEEEEeCCCC----------CCHHHHHHHHH
Confidence 44433 247999999998 68899988764
No 249
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.54 E-value=3.8e-13 Score=125.72 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=100.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe---eeeEEeeCCeEEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT---AHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~---~~~~~~~~~~~~~iiDtpGh 85 (593)
++..++|+++|+.++|||||+.++....... +. ..|+.. ....+......+.||||+|+
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~----------------~~--~pT~~~~~~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE----------------NY--VPTVFENYTASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCC----------------cc--CCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 4677899999999999999999998532110 00 111111 11222223345779999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhh--HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHH---------HHHHH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQT--REHILLARQV--GVPYIVVFLNKADMVDDEELL---------ELVEI 152 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt--~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~---------~~~~~ 152 (593)
++|.......++.+|++++|+|.++...-+. ...+..+... +.| +|++.||+|+.+..... ..-..
T Consensus 64 e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~ 142 (182)
T cd04172 64 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYD 142 (182)
T ss_pred hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHH
Confidence 9998887778889999999999987422121 1222333322 566 45567999986421000 01123
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCc-HHHHHHHhhh
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQS-ILSLSKALDT 200 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~-~~~ll~~l~~ 200 (593)
+..++.+.++. ++++.+||++| .+ +.++++.+..
T Consensus 143 ~~~~~a~~~~~----~~~~E~SAk~~----------~n~v~~~F~~~~~ 177 (182)
T cd04172 143 QGANMAKQIGA----ATYIECSALQS----------ENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHHcCC----CEEEECCcCCC----------CCCHHHHHHHHHH
Confidence 45556655542 48999999998 55 8888877654
No 250
>KOG0098|consensus
Probab=99.54 E-value=1.1e-13 Score=122.58 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=107.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~~~ 88 (593)
..+++.++|+.|+|||.|+-+.+..... ..+.. .+.++.....+..+++ ++.+|||+||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~--------------~~hd~--TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQ--------------PVHDL--TIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcc--------------ccccc--eeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 5689999999999999999998854211 11111 2233333344444444 5679999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCe--EEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPY--IVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~--iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
...+-++++.+-++|||.|.+. ..+.....+|.-++..+-+. ++++-||+|+....+. -+++-+.+.++.++
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V---s~EEGeaFA~ehgL-- 143 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREV---SKEEGEAFAREHGL-- 143 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccc---cHHHHHHHHHHcCc--
Confidence 9999999999999999999987 33444455666677665433 3444599999865322 23466777777654
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
++..+||+++ .++++.+....
T Consensus 144 ---ifmETSakt~----------~~VEEaF~nta 164 (216)
T KOG0098|consen 144 ---IFMETSAKTA----------ENVEEAFINTA 164 (216)
T ss_pred ---eeehhhhhhh----------hhHHHHHHHHH
Confidence 5889999998 56666555443
No 251
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.54 E-value=8.8e-14 Score=147.69 Aligned_cols=151 Identities=22% Similarity=0.288 Sum_probs=111.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh---
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~--- 88 (593)
..+|+++|++|+|||||+|+|++.....++.. |+|++-....+...++.+.++|+||--.+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp----------------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP----------------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY 66 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCC----------------CeeEEEEEEEEEecCceEEEEeCCCcCCCCCC
Confidence 35699999999999999999998766665543 89999999999999999999999993222
Q ss_pred ---HHHHHHhh--hcCCEEEEEEECCCCCChhhHHHHH---HHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 89 ---IKNMITGA--AQMDGAILVCSAADGPMPQTREHIL---LARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 89 ---~~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~---~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
.+-....+ ..+|.++-|+||++ .++++. .+..+|+| +|+++|++|.... +.++-+.+++.+.
T Consensus 67 S~DE~Var~~ll~~~~D~ivnVvDAtn-----LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~----~Gi~ID~~~L~~~ 136 (653)
T COG0370 67 SEDEKVARDFLLEGKPDLIVNVVDATN-----LERNLYLTLQLLELGIP-MILALNMIDEAKK----RGIRIDIEKLSKL 136 (653)
T ss_pred CchHHHHHHHHhcCCCCEEEEEcccch-----HHHHHHHHHHHHHcCCC-eEEEeccHhhHHh----cCCcccHHHHHHH
Confidence 11111112 26799999999975 444443 45567999 6668999996643 1222344444454
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+ .+|++++||++| .|++++++.+....+
T Consensus 137 L-----GvPVv~tvA~~g----------~G~~~l~~~i~~~~~ 164 (653)
T COG0370 137 L-----GVPVVPTVAKRG----------EGLEELKRAIIELAE 164 (653)
T ss_pred h-----CCCEEEEEeecC----------CCHHHHHHHHHHhcc
Confidence 4 478999999998 789999999876443
No 252
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=2.1e-13 Score=131.63 Aligned_cols=161 Identities=16% Similarity=0.088 Sum_probs=99.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe-eeeEEeeCCeEEEEEecCChhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
....++|+++|..++|||||+.++....... +....+..+. ....+......+.||||+|+++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~----------------~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~ 73 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPE----------------TYVPTVFENYTAGLETEEQRVELSLWDTSGSPY 73 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCC----------------CcCCceeeeeEEEEEECCEEEEEEEEeCCCchh
Confidence 3467899999999999999999997532110 0000111111 1112222334577999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChh-h-HHHHHHHHH--cCCCeEEEEEeecCCCCHHH-H--------HHHHHHHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQ-T-REHILLARQ--VGVPYIVVFLNKADMVDDEE-L--------LELVEIEI 154 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~q-t-~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~-~--------~~~~~~~~ 154 (593)
|.......+..+|+++||+|.++...-+ . ..++..+.. -++| +|+|.||+|+.+... . ...-..+.
T Consensus 74 ~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~ 152 (232)
T cd04174 74 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQG 152 (232)
T ss_pred hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHH
Confidence 9888888889999999999998733222 1 222333332 2566 455679999864200 0 00112245
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcC-cHHHHHHHhhh
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ-SILSLSKALDT 200 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~-~~~~ll~~l~~ 200 (593)
.++.+.++. .+++.+||++| . +++++++.+..
T Consensus 153 ~~~a~~~~~----~~~~EtSAktg----------~~~V~e~F~~~~~ 185 (232)
T cd04174 153 CALAKQLGA----EVYLECSAFTS----------EKSIHSIFRSASL 185 (232)
T ss_pred HHHHHHcCC----CEEEEccCCcC----------CcCHHHHHHHHHH
Confidence 566666542 26999999997 4 57787777654
No 253
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.53 E-value=8.7e-14 Score=118.18 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=75.5
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEe-------------cCCcccccCCCEEEEEEEeCcee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLITVRLINPI 369 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~gd~~~v~~~~~~p~ 369 (593)
.+++|+|++.||+++ .++|.+||+|++|+++.++.|++.- ..++++|.+||.+.|+|++.+|+
T Consensus 2 ~~~~F~A~i~vl~~~----~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi 77 (108)
T cd03704 2 VVTEFEAQIAILELK----RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPI 77 (108)
T ss_pred cccEEEEEEEEEeCC----CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcE
Confidence 367899999999975 2479999999999999999998851 12567999999999999999999
Q ss_pred eeecC------CeEEEeeCCeEEEeeee
Q psy8869 370 AMEEG------LRFAIREGVQQFIQDNL 391 (593)
Q Consensus 370 ~~~~~------~r~vlr~~~~~i~~G~v 391 (593)
|++.+ +||+||++|+|+|+|.|
T Consensus 78 ~~e~~~~~~~lGRf~lR~~g~Tva~G~V 105 (108)
T cd03704 78 CLEKFEDFPQLGRFTLRDEGKTIAIGKV 105 (108)
T ss_pred EEEEcccCCCcccEEEEeCCCEEEEEEE
Confidence 99998 89999999999999986
No 254
>PRK11058 GTPase HflX; Provisional
Probab=99.53 E-value=1e-13 Score=145.59 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=97.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhhh---
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADY--- 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~~--- 88 (593)
..|+++|.+|+|||||+|+|++..... ....+.|.+.....+...+ ..+.++||||..+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v----------------~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYA----------------ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceee----------------ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH
Confidence 579999999999999999998532110 0012445555544455444 37889999997332
Q ss_pred -----HHHHHHhhhcCCEEEEEEECCCCCChhh----HHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 89 -----IKNMITGAAQMDGAILVCSAADGPMPQT----REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 89 -----~~~~~~~~~~~d~~ilVvda~~g~~~qt----~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+..+...+..+|++++|+|+++...... .+.+..+...++|.+ +++||+|+.+.... .+ .. .
T Consensus 262 ~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL~~~~~~--~~----~~--~ 332 (426)
T PRK11058 262 DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDMLDDFEP--RI----DR--D 332 (426)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccCCCchhH--HH----HH--H
Confidence 2234556678999999999988543222 222333333467754 56799999753111 11 10 0
Q ss_pred hcCCCCCCce-EEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 160 KYEFPGNDIP-IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 160 ~~~~~~~~~~-vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.. ..| ++++||++| .|+++|+++|...+.
T Consensus 333 ~~-----~~~~~v~ISAktG----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EE-----NKPIRVWLSAQTG----------AGIPLLFQALTERLS 362 (426)
T ss_pred hc-----CCCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 11 223 588999998 789999999988764
No 255
>KOG0394|consensus
Probab=99.53 E-value=1.3e-13 Score=121.84 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEE--eeeeEEeeCCeEE--EEEecC
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN--TAHIEYETKARHY--AHVDCP 83 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~--~~~~~~~~~~~~~--~iiDtp 83 (593)
+++..++|.++|..|+|||+|++++........ ...||. .....+..+++.+ .||||+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~q------------------ykaTIgadFltKev~Vd~~~vtlQiWDTA 66 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQ------------------YKATIGADFLTKEVQVDDRSVTLQIWDTA 66 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHH------------------hccccchhheeeEEEEcCeEEEEEEEecc
Confidence 456779999999999999999999986533221 122332 2223334445554 489999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHH--HHHHHc------CCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI--LLARQV------GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l--~~~~~l------~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
|+++|...-...++.+|+++||.|.+..-.-...+.+ +++... .-| |||+-||+|+.+-+.+.. -.....
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~V-S~~~Aq 144 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQV-SEKKAQ 144 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCcccee-eHHHHH
Confidence 9999999888888999999999999873332222222 233332 246 555679999876321111 112445
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
.+++.-+ ++|.+.+||+.+ .++++.++.+.
T Consensus 145 ~WC~s~g----nipyfEtSAK~~----------~NV~~AFe~ia 174 (210)
T KOG0394|consen 145 TWCKSKG----NIPYFETSAKEA----------TNVDEAFEEIA 174 (210)
T ss_pred HHHHhcC----CceeEEeccccc----------ccHHHHHHHHH
Confidence 6666544 799999999987 45555555544
No 256
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.51 E-value=2e-13 Score=127.27 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe-eeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
++|+++|..++|||||+.++.+..... +....+..+. ....+......+.+|||||+++|...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~----------------~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE----------------TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC----------------CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhc
Confidence 689999999999999999998542110 0000111111 11122223345779999999999887
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhh-HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHH---------HHHHHHHHHH
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEIEIRELL 158 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt-~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~---------~~~~~~~~~l 158 (593)
....++.+|++|+|+|.++... ... ..++..+... ++| ++++.||+|+.+...... ....+..++.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 7778889999999999987332 221 2333333332 566 455679999864210000 0112445555
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcC-cHHHHHHHhhh
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ-SILSLSKALDT 200 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~-~~~~ll~~l~~ 200 (593)
+..+. .+++.+||++| . ++.+++..+..
T Consensus 145 ~~~~~----~~~~E~SA~~~----------~~~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGA----EIYLECSAFTS----------EKSVRDIFHVATM 173 (178)
T ss_pred HHhCC----CEEEECccCcC----------CcCHHHHHHHHHH
Confidence 55432 47999999998 4 48888877655
No 257
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=5.2e-13 Score=127.19 Aligned_cols=126 Identities=23% Similarity=0.346 Sum_probs=80.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe--eCCeEEEEEecCChhhhHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE--TKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~iiDtpGh~~~~~~ 91 (593)
+|+++|++|+|||||+.+|....... . ...++.+.....+. ..+..+.+||+|||.+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~------------t-----~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS------------T-----VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC------------c-----cCcEeecceEEEeecCCCCceEEEEECCCCHHHHHH
Confidence 68999999999999999998531100 0 00011112222221 23567899999999999988
Q ss_pred HHHhhhcC-CEEEEEEECCCCC--ChhhHHHHHHHH----H--cCCCeEEEEEeecCCCCH---HHHHHHHHHHHHHH
Q psy8869 92 MITGAAQM-DGAILVCSAADGP--MPQTREHILLAR----Q--VGVPYIVVFLNKADMVDD---EELLELVEIEIREL 157 (593)
Q Consensus 92 ~~~~~~~~-d~~ilVvda~~g~--~~qt~e~l~~~~----~--l~ip~iiVvvNK~Dl~~~---~~~~~~~~~~~~~~ 157 (593)
+...+..+ +++|+|+|+.+.. ...+.+++..+. . .++|.+ +++||+|+... +...+.+..++..+
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl-iv~NK~Dl~~a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL-IACNKQDLFTAKPAKKIKEQLEKELNTL 141 (203)
T ss_pred HHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE-EEecchhhcccCCHHHHHHHHHHHHHHH
Confidence 88888888 9999999998852 233344443221 1 367755 56799998753 23344444444433
No 258
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.51 E-value=1.4e-13 Score=150.71 Aligned_cols=145 Identities=21% Similarity=0.260 Sum_probs=100.5
Q ss_pred ecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH-----HH
Q psy8869 19 GHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN-----MI 93 (593)
Q Consensus 19 G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~-----~~ 93 (593)
|.+|+|||||+|+|++..... ....|+|.+.....++.++..+.++||||+.++... +.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v----------------~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTV----------------GNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCee----------------cCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 889999999999998642111 113588888877777888888999999998877432 11
Q ss_pred H---hhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 94 T---GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 94 ~---~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
. ....+|.+++|+|+++.. ...+....+...++|.+ +++||+|+.+.... ..+.+.+.+.+ ++|+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiI-IVlNK~Dl~~~~~i----~~d~~~L~~~l-----g~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMI-LALNLVDEAEKKGI----RIDEEKLEERL-----GVPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEE-EEEehhHHHHhCCC----hhhHHHHHHHc-----CCCE
Confidence 1 123789999999998732 23333344556788855 56899998643211 11233344443 3689
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+++||++| .|++++++++.+.
T Consensus 133 v~tSA~tg----------~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 133 VPTSATEG----------RGIERLKDAIRKA 153 (591)
T ss_pred EEEECCCC----------CCHHHHHHHHHHH
Confidence 99999998 7899999998764
No 259
>KOG0078|consensus
Probab=99.51 E-value=6.6e-13 Score=121.16 Aligned_cols=156 Identities=19% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeE--EEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARH--YAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~iiDtpGh~~ 87 (593)
...++|+++|..++|||+++-++........ ....+.++......+.+++. +.+|||.|+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~----------------~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS----------------FISTIGIDFKIKTIELDGKKIKLQIWDTAGQER 73 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCC----------------ccceEEEEEEEEEEEeCCeEEEEEEEEcccchh
Confidence 4678999999999999999998875322110 01123344444445555554 55999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHH---HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLAR---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~---~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+-++++.|++++||+|.++. .+...+..+..+. .-+++.++ +-||+|+.+.... -...-+.+...++
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~L-vGNK~D~~~~R~V---~~e~ge~lA~e~G- 148 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKIL-VGNKCDLEEKRQV---SKERGEALAREYG- 148 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEE-eeccccccccccc---cHHHHHHHHHHhC-
Confidence 999999999999999999999872 2222222222232 23788666 4699998874111 1223445555554
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
++|+.+||++| .++++.+-.|.+
T Consensus 149 ----~~F~EtSAk~~----------~NI~eaF~~La~ 171 (207)
T KOG0078|consen 149 ----IKFFETSAKTN----------FNIEEAFLSLAR 171 (207)
T ss_pred ----CeEEEccccCC----------CCHHHHHHHHHH
Confidence 67999999998 456555555544
No 260
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=2.1e-13 Score=129.14 Aligned_cols=150 Identities=16% Similarity=0.074 Sum_probs=94.6
Q ss_pred EecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhh
Q psy8869 18 IGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAA 97 (593)
Q Consensus 18 ~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~ 97 (593)
+|+.++|||||+.++....... .....-|.+.....+.+......+.||||||+++|...+...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--------------~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--------------KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--------------CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 5999999999999987421100 00001122222222222233456789999999999988888899
Q ss_pred cCCEEEEEEECCCCCCh-hhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q psy8869 98 QMDGAILVCSAADGPMP-QTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 174 (593)
Q Consensus 98 ~~d~~ilVvda~~g~~~-qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~S 174 (593)
.+|++|+|+|+++...- .....+..+.. -++|.++ +.||+|+.......+ .+ .+.+. ..++++.+|
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piil-vgNK~Dl~~~~v~~~----~~-~~~~~-----~~~~~~e~S 135 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVL-CGNKVDVKDRKVKAK----SI-TFHRK-----KNLQYYDIS 135 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEE-EEECcccccccCCHH----HH-HHHHH-----cCCEEEEEe
Confidence 99999999999985322 22233333333 3677554 579999864311111 11 22222 247899999
Q ss_pred cCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 175 AKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 175 a~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
|++| .++.+++++|...+
T Consensus 136 Ak~~----------~~v~~~F~~l~~~i 153 (200)
T smart00176 136 AKSN----------YNFEKPFLWLARKL 153 (200)
T ss_pred CCCC----------CCHHHHHHHHHHHH
Confidence 9998 68889888887654
No 261
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.50 E-value=2.1e-13 Score=115.12 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=75.0
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccccCCCEEEEEEEeCcee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVRLINPI 369 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~gd~~~v~~~~~~p~ 369 (593)
.+++|+|++.||+++ .||.+||++.+|+++.++.|++..+ +++..|.+||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLNHP-----GQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred cccEEEEEEEEECCC-----CcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCee
Confidence 467899999999975 5899999999999999999998622 2457899999999999999999
Q ss_pred eeecC------CeEEEeeCCeEEEeeee
Q psy8869 370 AMEEG------LRFAIREGVQQFIQDNL 391 (593)
Q Consensus 370 ~~~~~------~r~vlr~~~~~i~~G~v 391 (593)
+++++ +||+|||+|.|+|+|.|
T Consensus 77 ~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99997 89999999999999975
No 262
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.50 E-value=1e-12 Score=126.26 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=95.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIK 90 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~ 90 (593)
++|+++|..++|||||+.++++.... .+....+..+. ...+..+ ...+.||||+|++.|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----------------~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP----------------GSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------CccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 68999999999999999999853110 00000111111 1122333 34577899999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHH-HHHHH--cCCCeEEEEEeecCCCCHHHHHHH--------H-HHHHHHH
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHI-LLARQ--VGVPYIVVFLNKADMVDDEELLEL--------V-EIEIREL 157 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l-~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~--------~-~~~~~~~ 157 (593)
.....+..+|++|+|+|.++... ......+ ..... -++|.+ +|.||+|+.+.....+. + ..+...+
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~pii-LVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ 143 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVV-LVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL 143 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEEECcccccchhhhhhhhhccCCccCHHHHHHH
Confidence 88888899999999999987321 1111212 12222 356744 46799998653111111 1 1233444
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+.++ .++++.+||+++. .++.++++....
T Consensus 144 ak~~~----~~~y~E~SAk~~~---------~~V~~~F~~~~~ 173 (222)
T cd04173 144 AKQVG----AVSYVECSSRSSE---------RSVRDVFHVATV 173 (222)
T ss_pred HHHcC----CCEEEEcCCCcCC---------cCHHHHHHHHHH
Confidence 44443 2589999999872 247777776544
No 263
>KOG0095|consensus
Probab=99.49 E-value=6.4e-13 Score=112.73 Aligned_cols=160 Identities=21% Similarity=0.186 Sum_probs=109.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
|--++|+++|+.|+|||.|+.++++++...+.+... |+...+.....+.+..++.||||+|+++|.
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgati--------------gvdfmiktvev~gekiklqiwdtagqerfr 70 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFMIKTVEVNGEKIKLQIWDTAGQERFR 70 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee--------------eeeEEEEEEEECCeEEEEEEeeccchHHHH
Confidence 455799999999999999999999876544433221 333444455556666778899999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+.++++.+++.+||.|.+..+ +.-.-+.|..+... .+-.++ +-||+|+.+..+.-+.+-.++.+.-
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkil-vgnk~d~~drrevp~qigeefs~~q------- 142 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKIL-VGNKIDLADRREVPQQIGEEFSEAQ------- 142 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEe-eccccchhhhhhhhHHHHHHHHHhh-------
Confidence 99999999999999999988633 32233334333332 333344 5699999876444444443333321
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+.-+..+||+.. .+++.|+..+...+
T Consensus 143 -dmyfletsakea----------~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 143 -DMYFLETSAKEA----------DNVEKLFLDLACRL 168 (213)
T ss_pred -hhhhhhhcccch----------hhHHHHHHHHHHHH
Confidence 234788999986 56777776665443
No 264
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=3.3e-13 Score=121.31 Aligned_cols=148 Identities=23% Similarity=0.235 Sum_probs=95.3
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCce-EEeeeeEEe--eCCeEEEEEecCChhhhHHHHH
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGIT-INTAHIEYE--TKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t-~~~~~~~~~--~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
++|++|+|||||+++|.+.... .. ....| .+.....+. .....+.+||+||+..+...+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~---------------~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV---------------PE--EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC---------------Cc--ccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 5899999999999999864221 00 00111 222222222 2356789999999999988887
Q ss_pred HhhhcCCEEEEEEECCCCCChhhHHH-----HHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 94 TGAAQMDGAILVCSAADGPMPQTREH-----ILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~~qt~e~-----l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
..+..+|++++|+|++++...+.... +......+.| +++++||+|+.+........ ........ ...
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~---~~~~~~~~----~~~ 135 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE---LAEQLAKE----LGV 135 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH---HHHHHHhh----cCC
Confidence 78889999999999998554333332 2333445677 55568999998653221111 01111111 257
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
+++++|+.++ .++.+++++|.
T Consensus 136 ~~~~~s~~~~----------~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTG----------ENVEELFEELA 156 (157)
T ss_pred cEEEEecCCC----------CChHHHHHHHh
Confidence 8999999987 67888888764
No 265
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.48 E-value=1.2e-12 Score=127.14 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=59.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------ 87 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~------ 87 (593)
+|+++|.+|+|||||+++|++.....+. ..+.|.+.....++.++..+.+|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~----------------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA----------------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC----------------CCCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 6899999999999999999965321111 113344444445566788899999999743
Q ss_pred -hHHHHHHhhhcCCEEEEEEECCCC
Q psy8869 88 -YIKNMITGAAQMDGAILVCSAADG 111 (593)
Q Consensus 88 -~~~~~~~~~~~~d~~ilVvda~~g 111 (593)
+...+...++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 334556678899999999998753
No 266
>KOG1423|consensus
Probab=99.47 E-value=2e-12 Score=123.48 Aligned_cols=171 Identities=22% Similarity=0.238 Sum_probs=104.0
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC--
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG-- 84 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-- 84 (593)
.+....++|+++|.+|+|||||.|.+.+....... ++-.+|.......+..+..++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS---------------~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS---------------RKVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcccccc---------------ccccceeeeeeEEEecCceEEEEecCCccc
Confidence 34567899999999999999999999864321111 1112333333445667888999999999
Q ss_pred ----hhhh------HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH-cCCCeEEEEEeecCCCCHHHHHHHHHH-
Q psy8869 85 ----HADY------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEI- 152 (593)
Q Consensus 85 ----h~~~------~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~-l~ip~iiVvvNK~Dl~~~~~~~~~~~~- 152 (593)
|.++ ..+...++..||++++|+|+++.-....-..|..+.. ..+|-++| +||+|........-.++.
T Consensus 132 s~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lv-mnkid~~k~k~~Ll~l~~~ 210 (379)
T KOG1423|consen 132 SKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILV-MNKIDKLKQKRLLLNLKDL 210 (379)
T ss_pred ccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceee-ccchhcchhhhHHhhhHHh
Confidence 2222 2344456778999999999986322222222322222 36887764 799998764222111111
Q ss_pred -----------HHHHHHhhcC---CC----CC--CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 153 -----------EIRELLNKYE---FP----GN--DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 153 -----------~~~~~l~~~~---~~----~~--~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++.+-..... .+ +| .-.+|++||++| .|+.+|-++|....|
T Consensus 211 Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G----------~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 211 LTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG----------EGIKDLKQYLMSQAP 271 (379)
T ss_pred ccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc----------cCHHHHHHHHHhcCC
Confidence 1111111111 00 01 234899999998 789999999887655
No 267
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.46 E-value=7.3e-13 Score=121.57 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=99.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|+.++|||||+.+|.+.... .......|.........++.....+.+||++|+++|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--------------ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--------------SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999999854211 00111123333333333333344577999999999987777
Q ss_pred HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc-C-CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 94 TGAAQMDGAILVCSAADGP-MPQTREHILLARQV-G-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l-~-ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
..+..+|++|+|.|.++.. +......+..+... . -++++|+.||.|+.+.... -.++..++.+.+ ..++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v---~~~~~~~~~~~~-----~~~~ 138 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV---SVEEAQEFAKEL-----GVPY 138 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS---CHHHHHHHHHHT-----TSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc---hhhHHHHHHHHh-----CCEE
Confidence 7788999999999998722 12222233333322 2 2346667799998863111 112445555554 3789
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+.+||+++ .++.+++..+.+
T Consensus 139 ~e~Sa~~~----------~~v~~~f~~~i~ 158 (162)
T PF00071_consen 139 FEVSAKNG----------ENVKEIFQELIR 158 (162)
T ss_dssp EEEBTTTT----------TTHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHH
Confidence 99999997 678888877654
No 268
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.46 E-value=5.6e-13 Score=112.22 Aligned_cols=84 Identities=31% Similarity=0.534 Sum_probs=75.5
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecC-----------CcccccCCCEEEEEEEeCceeee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAM 371 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~gd~~~v~~~~~~p~~~ 371 (593)
++++|+|++.++.++ .+|..||++.+|+++.+..|++..+. +++.+++||.+.|+|++.+|+++
T Consensus 2 ~~~~f~a~i~~l~~~-----~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYVLDHP-----EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEE
Confidence 568999999999875 58999999999999999999986543 46789999999999999999999
Q ss_pred e------cCCeEEEeeCCeEEEeeee
Q psy8869 372 E------EGLRFAIREGVQQFIQDNL 391 (593)
Q Consensus 372 ~------~~~r~vlr~~~~~i~~G~v 391 (593)
+ .++||+||++++|+|+|.|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9 7899999999999999975
No 269
>KOG0080|consensus
Probab=99.46 E-value=8e-13 Score=113.80 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=96.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|.++|..|+|||+|+-+++....+.. +...-|+...+..........++.||||+|+++|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~--------------~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDL--------------HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCcc--------------CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 4568999999999999999998875422211 11122444455555666666778899999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHH-HHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHI-LLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l-~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+.++++.|.++|+|.|.+.-..-...+++ ..+... ++-.++| -||+|..+.... -.++=.++.+.+
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlV-gNKiDkes~R~V---~reEG~kfAr~h--- 147 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLV-GNKIDKESERVV---DREEGLKFARKH--- 147 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhh-cccccchhcccc---cHHHHHHHHHhh---
Confidence 9999999999999999999873221122332 223222 3333454 599996643111 112333444443
Q ss_pred CCCceEEEeccCccc
Q psy8869 165 GNDIPIIKGSAKLAL 179 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~ 179 (593)
.+-|+.+||++..
T Consensus 148 --~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 148 --RCLFIECSAKTRE 160 (209)
T ss_pred --CcEEEEcchhhhc
Confidence 4669999999973
No 270
>KOG0073|consensus
Probab=99.46 E-value=1.8e-12 Score=112.45 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=104.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..++|.++|..||||||++.+|.+...+. . .-|........+.+++.+++||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~---------------i----~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDT---------------I----SPTLGFQIKTLEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccc---------------c----CCccceeeEEEEecceEEEEEEcCCcchhHH
Confidence 47999999999999999999997542110 0 1122233344667889999999999999999
Q ss_pred HHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHH----HHcCCCeEEEEEeecCCCCHHHHHHHHH--HHHHHHHhhcCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVE--IEIRELLNKYEF 163 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~----~~l~ip~iiVvvNK~Dl~~~~~~~~~~~--~~~~~~l~~~~~ 163 (593)
-+..++..+|+.|+|+|+.+.. +.++..++..+ +..|.|.+++ .||.|+...-. .+.+. ..++++.+.
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvl-ank~dl~~~l~-~~~i~~~~~L~~l~ks--- 150 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVL-ANKQDLPGALS-LEEISKALDLEELAKS--- 150 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEE-EecCcCccccC-HHHHHHhhCHHHhccc---
Confidence 9999999999999999997632 23444444333 2347786665 59999985411 11121 234444432
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
..++++.+||.+| +++.+-+++|..
T Consensus 151 --~~~~l~~cs~~tg----------e~l~~gidWL~~ 175 (185)
T KOG0073|consen 151 --HHWRLVKCSAVTG----------EDLLEGIDWLCD 175 (185)
T ss_pred --cCceEEEEecccc----------ccHHHHHHHHHH
Confidence 4688999999998 455555555543
No 271
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.45 E-value=5.6e-13 Score=108.51 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=74.6
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEe-CceeeeecCCeEEEee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRL-INPIAMEEGLRFAIRE 381 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~-~~p~~~~~~~r~vlr~ 381 (593)
++++|+|++.||+++ ++|.+||+|++|+++.++.|++..... +++++||.+.|+++| .+|+++++++||+||+
T Consensus 2 ~~~~f~A~i~il~~~-----~~i~~Gy~~~l~~~t~~~~~~i~~i~~-~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~ 75 (87)
T cd03708 2 ACWEFEAEILVLHHP-----TTISPGYQATVHIGSIRQTARIVSIDK-DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE 75 (87)
T ss_pred ceeEEEEEEEEEcCC-----CcccCCCEeEEEEcCCEEEEEEEeccH-hhccCCCeEEEEEEECCCCcEEccCCeEEEEC
Confidence 578999999999975 589999999999999999999875544 789999999999996 6999999999999988
Q ss_pred CCeEEEeeeec
Q psy8869 382 GVQQFIQDNLL 392 (593)
Q Consensus 382 ~~~~i~~G~v~ 392 (593)
+ +|+|+|.|.
T Consensus 76 g-~tva~G~I~ 85 (87)
T cd03708 76 G-RTKGVGEVT 85 (87)
T ss_pred C-CcEEEEEEE
Confidence 8 999999873
No 272
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.44 E-value=1.7e-12 Score=107.78 Aligned_cols=95 Identities=25% Similarity=0.436 Sum_probs=85.9
Q ss_pred ceEEecCCCCCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeee
Q psy8869 292 GQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAM 371 (593)
Q Consensus 292 G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~ 371 (593)
|++++.+++..+++.|.+++.++... ..++..++++.+|+|+.+..|++.+.+ .+.+.+|+.+.++++|++|+++
T Consensus 1 G~vl~~~~~~~~~~~~~~~i~~l~~~----~~~l~~~~~v~~~~Gt~~v~~ri~ll~-~~~~~pg~~~~a~l~l~~pl~~ 75 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSA----PRPLKHRQRVHLHHGTSEVLARVVLLD-RDELAPGEEALAQLRLEEPLVA 75 (97)
T ss_pred CCEEecCCCcCCceEEEEEEEEECCC----CccCCCCCeEEEEeccceEEEEEEeCC-ccccCCCCEEEEEEEECCcEee
Confidence 78999988877789999999998764 357999999999999999999998665 5678999999999999999999
Q ss_pred ecCCeEEEeeCC--eEEEeeee
Q psy8869 372 EEGLRFAIREGV--QQFIQDNL 391 (593)
Q Consensus 372 ~~~~r~vlr~~~--~~i~~G~v 391 (593)
..|+||+||+.+ +|+|+|.|
T Consensus 76 ~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 76 LRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred cCCCeEEEeeCCCCeEEEeEEC
Confidence 999999999998 99999975
No 273
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=131.31 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=104.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHAD 87 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~~ 87 (593)
......|+++|-+|||||||+|+|++........ + -.|.+.+...+... ++.+.+-||-|.-+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~-------L---------FATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ-------L---------FATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeecccc-------c---------cccccCceeEEEeCCCceEEEecCccCcc
Confidence 3567799999999999999999999542211110 1 24666666666665 68899999999544
Q ss_pred h--------HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 88 Y--------IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 88 ~--------~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
- ++.++.....+|.++.|||+++... .|.......+..+ .+| +|+|.||+|++..+.....
T Consensus 253 ~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~~~~------ 325 (411)
T COG2262 253 DLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEILAE------ 325 (411)
T ss_pred cCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhhhhh------
Confidence 4 3445556678999999999998522 2222233344443 556 5556899998876431111
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+... ..+.+++||++| .|++.|.+.|...++
T Consensus 326 --~~~~-----~~~~v~iSA~~~----------~gl~~L~~~i~~~l~ 356 (411)
T COG2262 326 --LERG-----SPNPVFISAKTG----------EGLDLLRERIIELLS 356 (411)
T ss_pred --hhhc-----CCCeEEEEeccC----------cCHHHHHHHHHHHhh
Confidence 1110 114899999998 689999999988765
No 274
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.43 E-value=1.5e-12 Score=110.46 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=74.9
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEe-------------cCCcccccCCCEEEEEEEeCcee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLITVRLINPI 369 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~gd~~~v~~~~~~p~ 369 (593)
.+++|+|++.|++++ .||.+||++.+|+++....|++.- ..++.+|++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNVD-----KPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeE
Confidence 367899999999975 589999999999999999998752 12457899999999999999999
Q ss_pred eeecC------CeEEEeeCCeEEEeeeec
Q psy8869 370 AMEEG------LRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 370 ~~~~~------~r~vlr~~~~~i~~G~v~ 392 (593)
|++++ +||+||++|.|+|+|.|.
T Consensus 77 ~~e~~~~~~~~Grfilr~~~~Tva~G~I~ 105 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVT 105 (107)
T ss_pred EEEEcccCCCcceEEEEcCCCEEEEEEEE
Confidence 99997 799999999999999873
No 275
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.42 E-value=3.7e-12 Score=120.85 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCCh------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGH------ 85 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh------ 85 (593)
++|+++|.+|+|||||+++|++..... .+... ... ...|.... .+.. ....+.+|||||.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-~~~~~----~~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~ 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-EGAAP----TGV------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-CCccc----cCc------cccccCce--eeecCCCCCceEEeCCCCCcccCC
Confidence 689999999999999999998642111 01000 000 00111111 1111 1346899999995
Q ss_pred -hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH------------HHHHHHHHH
Q psy8869 86 -ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD------------EELLELVEI 152 (593)
Q Consensus 86 -~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~------------~~~~~~~~~ 152 (593)
+.|+..+ ++..+|.+++|.|. .........+..+...+.|. ++|.||+|+..+ ++..+.+.+
T Consensus 69 ~~~~l~~~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~-ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~ 143 (197)
T cd04104 69 PDDYLEEM--KFSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKF-YFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRD 143 (197)
T ss_pred HHHHHHHh--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCE-EEEEecccchhhhhhccccccccHHHHHHHHHH
Confidence 3454432 35678988887543 34455556667777778775 556899998542 133444555
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
.+...++..+.. ..+++.+|+.... +-++..|.+.+...||..
T Consensus 144 ~~~~~~~~~~~~--~p~v~~vS~~~~~--------~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 144 NCLENLQEAGVS--EPPVFLVSNFDPS--------DYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHHcCCC--CCCEEEEeCCChh--------hcChHHHHHHHHHHhhHH
Confidence 555555544432 4579999998410 036778888888777643
No 276
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.42 E-value=2.2e-12 Score=117.81 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=89.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|+.|+|||||+.+++....... .. + ..+ .. .....+......+.+|||+|+++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~---------~~--~---~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~~---- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL---------ES--P---EGG-RF-KKEVLVDGQSHLLLIRDEGGAPDA---- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC---------CC--C---Ccc-ce-EEEEEECCEEEEEEEEECCCCCch----
Confidence 4799999999999999998874311000 00 0 001 00 111222222345779999999753
Q ss_pred HHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHHc----CCCeEEEEEeecCCCCH--HHHHHHHHHHHHHHHhhcCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQT-REHILLARQV----GVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~l----~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+..+|++++|+|.++...-+. ...+..+... ++| ++++.||+|+... .... ..+.+++.+..
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~---~~~~~~~~~~~---- 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVID---DARARQLCADM---- 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccC---HHHHHHHHHHh----
Confidence 23467999999999988433222 3333333332 456 4556799998531 1111 11233344332
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
..++++++||++| .+++++++.+.+
T Consensus 132 ~~~~~~e~SAk~~----------~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYYETCATYG----------LNVERVFQEAAQ 156 (158)
T ss_pred CCCcEEEEecCCC----------CCHHHHHHHHHh
Confidence 1468999999998 689999988764
No 277
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=4.6e-12 Score=122.12 Aligned_cols=160 Identities=16% Similarity=0.042 Sum_probs=97.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
.....++|+++|+.|+|||||+++++...... ......|.......+........+.+|||||+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~ 70 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEK--------------KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCccceEEEEEEEEECCeEEEEEEEECCCchh
Confidence 34567999999999999999998766321100 0011112222222222233445678999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChhhHH-HHHHHH--HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQTRE-HILLAR--QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e-~l~~~~--~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
|.......+..+|++++|+|.++...-+... .+..+. .-++| ++++.||+|+.+.+... +...+.+..
T Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~~~-----~~~~~~~~~--- 141 (215)
T PTZ00132 71 FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQVKA-----RQITFHRKK--- 141 (215)
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccccCCH-----HHHHHHHHc---
Confidence 9777777777999999999998743322222 122221 12566 44467999986532111 111233322
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++.+.+|.+.+
T Consensus 142 --~~~~~e~Sa~~~----------~~v~~~f~~ia~~l 167 (215)
T PTZ00132 142 --NLQYYDISAKSN----------YNFEKPFLWLARRL 167 (215)
T ss_pred --CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 357999999998 56777777666544
No 278
>KOG0087|consensus
Probab=99.41 E-value=2.6e-12 Score=116.70 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=94.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~~~ 88 (593)
.-++|+++|.+++|||-|+.+++.. ....|....+.+.........+++ ...||||+|+++|
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrn----------------EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy 76 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRN----------------EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY 76 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccc----------------ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh
Confidence 4579999999999999999998732 222222333333444444444544 4569999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHH----HHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREH----ILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~----l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
..-+.++++.+-++|||.|.+. .+|.++ |..++.+ +++.++ +-||+||.+-...- .++-+.+.+.
T Consensus 77 rAitSaYYrgAvGAllVYDITr---~~Tfenv~rWL~ELRdhad~nivimL-vGNK~DL~~lraV~---te~~k~~Ae~- 148 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITR---RQTFENVERWLKELRDHADSNIVIML-VGNKSDLNHLRAVP---TEDGKAFAEK- 148 (222)
T ss_pred ccccchhhcccceeEEEEechh---HHHHHHHHHHHHHHHhcCCCCeEEEE-eecchhhhhccccc---hhhhHhHHHh-
Confidence 9888899999999999999987 444443 4444443 566554 46999987621111 1122333332
Q ss_pred CCCCCCceEEEeccCccc
Q psy8869 162 EFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~ 179 (593)
+...++.+||+.+.
T Consensus 149 ----~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 149 ----EGLFFLETSALDAT 162 (222)
T ss_pred ----cCceEEEecccccc
Confidence 24679999999874
No 279
>KOG0076|consensus
Probab=99.41 E-value=1.4e-12 Score=114.28 Aligned_cols=172 Identities=21% Similarity=0.176 Sum_probs=116.3
Q ss_pred ccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 6 ~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
+..+|..+.|.|+|.-+|||||++.++-+......++.. +.+. -.|........+.....+.|||..|+
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~---------~~ki--~~tvgLnig~i~v~~~~l~fwdlgGQ 79 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLN---------PSKI--TPTVGLNIGTIEVCNAPLSFWDLGGQ 79 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCC---------HHHe--ecccceeecceeeccceeEEEEcCCh
Confidence 456789999999999999999999988655443332211 1111 12333334445556778999999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCC-CChhh----HHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADG-PMPQT----REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g-~~~qt----~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
+.....+-.++.-++++++||||++. .+... +..+..-...|+|.++. .||-|+.+..+ ..++..-+.. .+.
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~l-ankqd~q~~~~-~~El~~~~~~-~e~ 156 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVL-ANKQDLQNAME-AAELDGVFGL-AEL 156 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhh-cchhhhhhhhh-HHHHHHHhhh-hhh
Confidence 99999999999999999999999982 22222 22233333458997665 69999987632 2223322222 222
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. +..+.|+.|+||++| .|+.+-.+++...++
T Consensus 157 ~--~~rd~~~~pvSal~g----------egv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 157 I--PRRDNPFQPVSALTG----------EGVKEGIEWLVKKLE 187 (197)
T ss_pred c--CCccCccccchhhhc----------ccHHHHHHHHHHHHh
Confidence 2 335789999999998 677777777766554
No 280
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.41 E-value=2.2e-12 Score=121.45 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEE-eeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
.+|+++|..|+|||||+++|....... +........ .....+......+.+||+||+++|...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE----------------EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc
Confidence 589999999999999999997431100 000000000 111122222345779999999888655
Q ss_pred HHHhhhcCCEEEEEEECCCCCC-hhhH-HHHHHHHHc--CCCeEEEEEeecCCCCHH--------HHHHHHHHHHHHHHh
Q psy8869 92 MITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDE--------ELLELVEIEIRELLN 159 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~-~qt~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~--------~~~~~~~~~~~~~l~ 159 (593)
....++.+|+++++.|.++... .... .++..+... .+| ++++.||+|+.+.. ..... ..+...+.+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHH
Confidence 4455678999999999976322 1211 123333322 567 55567999985421 00000 112334444
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++ ..+++.+||++| .+++++++.+...
T Consensus 144 ~~~----~~~~~e~Sa~~~----------~~v~~~f~~l~~~ 171 (187)
T cd04129 144 EIG----AKKYMECSALTG----------EGVDDVFEAATRA 171 (187)
T ss_pred HhC----CcEEEEccCCCC----------CCHHHHHHHHHHH
Confidence 443 257999999998 7899999988754
No 281
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=1.7e-12 Score=112.03 Aligned_cols=107 Identities=24% Similarity=0.338 Sum_probs=71.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh-------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA------- 86 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~------- 86 (593)
+|+++|.+|+|||||+++|++......+ ...+.|.......+..++..+.|+||||..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~---------------~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS---------------NIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES---------------SSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc---------------ccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 6899999999999999999953211100 012344444444566788889999999932
Q ss_pred --hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEee
Q psy8869 87 --DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (593)
Q Consensus 87 --~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK 137 (593)
+........+..+|++++|+|+.+....+..+.+..+. .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 13344555667899999999988733344455555554 5555 5667898
No 282
>KOG0086|consensus
Probab=99.40 E-value=7.6e-12 Score=106.75 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=97.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
-++++++|+.|+|||.|+.++.....++.. ...-|+......++......++.||||+|+++|..-
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds--------------sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSV 74 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS--------------SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV 74 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc--------------cceeeeeecceeeeecCcEEEEEEeecccHHHHHHH
Confidence 468999999999999999999865332211 112233333333334444456779999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHHHcCCCeEE--EEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 92 MITGAAQMDGAILVCSAADG-PMPQTREHILLARQVGVPYIV--VFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~l~ip~ii--VvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
+.++++++-+++||.|++.. .+...-..|.-++.+--|.++ ++-||-|+.+..+. .. .+...++.+ +.+
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tf--lEAs~FaqE-----nel 146 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV-TF--LEASRFAQE-----NEL 146 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh-hH--HHHHhhhcc-----cce
Confidence 99999999999999999873 334444456667777656544 34599998865221 11 122334433 235
Q ss_pred eEEEeccCccc
Q psy8869 169 PIIKGSAKLAL 179 (593)
Q Consensus 169 ~vi~~Sa~~g~ 179 (593)
-+..+||++|.
T Consensus 147 ~flETSa~TGe 157 (214)
T KOG0086|consen 147 MFLETSALTGE 157 (214)
T ss_pred eeeeecccccc
Confidence 68899999983
No 283
>KOG1489|consensus
Probab=99.40 E-value=3.5e-12 Score=122.69 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=93.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe-EEEEEecCChhh--
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHAD-- 87 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpGh~~-- 87 (593)
-...|+++|-+|||||||+++|+......+...+ +|+........+++. ++++-|.||-.+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaF----------------TTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF----------------TTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccce----------------eeeccccceeeccccceeEeccCccccccc
Confidence 3457899999999999999999977554443332 233332222333333 389999999211
Q ss_pred -----hHHHHHHhhhcCCEEEEEEECCCC---CChhhHHHH-HHHH----Hc-CCCeEEEEEeecCCCCHHHHHHHHHHH
Q psy8869 88 -----YIKNMITGAAQMDGAILVCSAADG---PMPQTREHI-LLAR----QV-GVPYIVVFLNKADMVDDEELLELVEIE 153 (593)
Q Consensus 88 -----~~~~~~~~~~~~d~~ilVvda~~g---~~~qt~e~l-~~~~----~l-~ip~iiVvvNK~Dl~~~~~~~~~~~~~ 153 (593)
.-...+.-+..|+..++|+|.+.+ .-.|..+.| ..+. .+ ..|.+|| +||+|+.+.++. -
T Consensus 259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV-aNKiD~~eae~~------~ 331 (366)
T KOG1489|consen 259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV-ANKIDLPEAEKN------L 331 (366)
T ss_pred cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE-EeccCchhHHHH------H
Confidence 112223334579999999999886 222222211 1111 12 4566665 699999754322 1
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 154 ~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+.++.+.+. +..++|+||+++ +++.+|++.|..
T Consensus 332 l~~L~~~lq----~~~V~pvsA~~~----------egl~~ll~~lr~ 364 (366)
T KOG1489|consen 332 LSSLAKRLQ----NPHVVPVSAKSG----------EGLEELLNGLRE 364 (366)
T ss_pred HHHHHHHcC----CCcEEEeeeccc----------cchHHHHHHHhh
Confidence 234444433 235999999998 678888888754
No 284
>PRK09866 hypothetical protein; Provisional
Probab=99.40 E-value=7.1e-12 Score=132.58 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=81.7
Q ss_pred CeEEEEEecCCh-h----hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC--CCeEEEEEeecCCCCH-HH
Q psy8869 74 ARHYAHVDCPGH-A----DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDD-EE 145 (593)
Q Consensus 74 ~~~~~iiDtpGh-~----~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~--ip~iiVvvNK~Dl~~~-~~ 145 (593)
..++.|+||||- . .+.+.|...+..+|.+++|+|++.+.....++.+..+...+ .| +++++||+|+.+. ++
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 357899999993 2 24556777888999999999999877777777777777777 47 5556899999752 21
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 146 LLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
..+.+...+...+....++ ...++|+||++| .+++.|++.|...
T Consensus 308 dkE~Lle~V~~~L~q~~i~--f~eIfPVSAlkG----------~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCIT--PQQIFPVSSMWG----------YLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCCC--CceEEEEeCCCC----------CCHHHHHHHHHhC
Confidence 2233443444443333332 356999999998 6888999988764
No 285
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.39 E-value=5.1e-12 Score=119.88 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=104.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY---- 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~---- 88 (593)
++|+++|.+|+|||||+|.|++...... .....+.|........+..++.++++||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES--------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc--------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 4899999999999999999986421110 0112356666666667778899999999994332
Q ss_pred ---HHHHHH----hhhcCCEEEEEEECCCCCChhhHHHHHHHHHc-C---CCeEEEEEeecCCCCHH---HHHHHHHHHH
Q psy8869 89 ---IKNMIT----GAAQMDGAILVCSAADGPMPQTREHILLARQV-G---VPYIVVFLNKADMVDDE---ELLELVEIEI 154 (593)
Q Consensus 89 ---~~~~~~----~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l-~---ip~iiVvvNK~Dl~~~~---~~~~~~~~~~ 154 (593)
...+.. ....+|++|+|+|+.+ ......+.+..+..+ | .++++|++|+.|....+ +........+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 222322 2346899999999987 666666666655553 3 35566778999977542 2222223456
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+++..+- .++..+.... + ...+.++.+|++.+...++
T Consensus 146 ~~l~~~c~~-----r~~~f~~~~~-~----~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 146 KRLLEKCGG-----RYVAFNNKAK-G----EEQEQQVKELLAKVESMVK 184 (196)
T ss_pred HHHHHHhCC-----eEEEEeCCCC-c----chhHHHHHHHHHHHHHHHH
Confidence 666665542 2334443320 0 0012578899999988765
No 286
>KOG0070|consensus
Probab=99.39 E-value=1.3e-12 Score=116.72 Aligned_cols=162 Identities=18% Similarity=0.138 Sum_probs=115.4
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
...+...+|+++|--+|||||++.+|-... ....-.|+......+++.+..+++||..|+.
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E-------------------~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~ 72 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGE-------------------IVTTVPTIGFNVETVEYKNISFTVWDVGGQE 72 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCC-------------------cccCCCccccceeEEEEcceEEEEEecCCCc
Confidence 346788999999999999999998874211 1111235555556677788999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH---c-CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---V-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~---l-~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
++...+..++...+++|+|||+++-. ....++-+..... + +.| ++|..||.|+..+-. ..++.+.+...
T Consensus 73 k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~als-----~~ei~~~L~l~ 146 (181)
T KOG0070|consen 73 KLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGALS-----AAEITNKLGLH 146 (181)
T ss_pred ccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccCC-----HHHHHhHhhhh
Confidence 99999999999999999999998732 2333333322222 2 455 455569999986511 12455555555
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+......+-.++|.+| +|+.+-+++|.+.+.
T Consensus 147 ~l~~~~w~iq~~~a~~G----------~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 147 SLRSRNWHIQSTCAISG----------EGLYEGLDWLSNNLK 178 (181)
T ss_pred ccCCCCcEEeecccccc----------ccHHHHHHHHHHHHh
Confidence 55555677889999998 788899998877553
No 287
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.9e-11 Score=121.88 Aligned_cols=216 Identities=20% Similarity=0.261 Sum_probs=143.7
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.-|.+.++++|++|+|||||+..|....... +-.+...-+|+.. ...++++|+.+| +-
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~-------------ti~~i~GPiTvvs------gK~RRiTflEcp---~D 123 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-------------TIDEIRGPITVVS------GKTRRITFLECP---SD 123 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHh-------------hhhccCCceEEee------cceeEEEEEeCh---HH
Confidence 3477899999999999999999997542211 1111122234322 356889999999 45
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 168 (593)
+..|+.-+..||.++|+||++-|....|.|.|.++...|.|.++-|+|..|+......+...+..++--+-.--++ .+
T Consensus 124 l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyq--Ga 201 (1077)
T COG5192 124 LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQ--GA 201 (1077)
T ss_pred HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcC--Cc
Confidence 7788888999999999999999999999999999999999999999999999876555555555444332222233 56
Q ss_pred eEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEE---------eCCCc--EEEEEEEEe-
Q psy8869 169 PIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFS---------ISGRG--TVVTGRVER- 236 (593)
Q Consensus 169 ~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~---------~~~~G--~v~~G~v~~- 236 (593)
.+|.+|.... ..|....+..|-.+|.-.--.|-+..+....+..+.+.. -+.+| ..++|.++.
T Consensus 202 KlFylsgV~n-----GRYpDreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt 276 (1077)
T COG5192 202 KLFYLSGVEN-----GRYPDREILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGT 276 (1077)
T ss_pred eEEEeccccc-----CCCCCHHHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCC
Confidence 7999998653 233334455555555432224444444333344443332 12233 346888886
Q ss_pred eeEecCCEEEEeecCCc
Q psy8869 237 GIVRVGEELEIIGIKDT 253 (593)
Q Consensus 237 G~l~~gd~v~i~p~~~~ 253 (593)
|-.+....|.|.+.+++
T Consensus 277 ~Lp~~d~~vHIpGvGDf 293 (1077)
T COG5192 277 GLPRKDMEVHIPGVGDF 293 (1077)
T ss_pred CCCCCCceEeccCcccc
Confidence 66777777877655444
No 288
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=117.58 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=111.3
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee-eeEEeeCCeEEEEEecCCh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~iiDtpGh 85 (593)
.-+++++||.++|.+|+|||||+|+|.+....... .-|.+.+.. +....++...++||||||-
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~----------------~vg~~t~~~~~~~~~~~~~~l~lwDtPG~ 97 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVS----------------KVGVGTDITTRLRLSYDGENLVLWDTPGL 97 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceee----------------ecccCCCchhhHHhhccccceEEecCCCc
Confidence 34678999999999999999999999954221110 002222111 1222345677999999995
Q ss_pred hh-------hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCC-CeEEEEEeecCCCCH------------HH
Q psy8869 86 AD-------YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV-PYIVVFLNKADMVDD------------EE 145 (593)
Q Consensus 86 ~~-------~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~i-p~iiVvvNK~Dl~~~------------~~ 145 (593)
++ |.......+...|.+++++++.+.........+......+. ..++++||.+|...+ ..
T Consensus 98 gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a 177 (296)
T COG3596 98 GDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPA 177 (296)
T ss_pred ccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHH
Confidence 44 77778888889999999999988655555555555555555 557888999997532 12
Q ss_pred HHHHHHH---HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 146 LLELVEI---EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 146 ~~~~~~~---~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
..+.+.. .+.+++.. -.|++..|+..+ | +++.|..++...+|..
T Consensus 178 ~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~------w----gl~~l~~ali~~lp~e 224 (296)
T COG3596 178 IKQFIEEKAEALGRLFQE------VKPVVAVSGRLP------W----GLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHHHHHHHhh------cCCeEEeccccC------c----cHHHHHHHHHHhCccc
Confidence 2222322 33333332 468888886664 3 7899999999888743
No 289
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.34 E-value=1.2e-11 Score=116.82 Aligned_cols=158 Identities=16% Similarity=0.068 Sum_probs=91.6
Q ss_pred eeEEEEEecCCCChHHHHH-HHHHHhhhhcCCccccccccCCChhhhhcCceEE---e--ee--------eEEeeCCeEE
Q psy8869 12 HINVGTIGHVDHGKTTLTA-AIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN---T--AH--------IEYETKARHY 77 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~-~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~---~--~~--------~~~~~~~~~~ 77 (593)
.++|+++|+.++|||||+. ++.......+ ....+. -.|+. . .. ...+.....+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~-----------~f~~~~--~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l 68 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQY-----------QLLATH--VPTVWAIDQYRVCQEVLERSRDVVDGVSVSL 68 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccc-----------cCcccc--CCceecccceeEEeeeccccceeeCCEEEEE
Confidence 4799999999999999996 4432110000 000000 11221 0 00 0122234567
Q ss_pred EEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHH-HHHHHHH--cCCCeEEEEEeecCCCCHH--H------
Q psy8869 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTRE-HILLARQ--VGVPYIVVFLNKADMVDDE--E------ 145 (593)
Q Consensus 78 ~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e-~l~~~~~--l~ip~iiVvvNK~Dl~~~~--~------ 145 (593)
.||||+|++++.. ...++.+|++++|+|.++... ..... .+..+.. -++| ++++.||+|+.+.. .
T Consensus 69 ~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhccc
Confidence 7999999986532 335679999999999987432 22221 2333333 2566 45567999986410 0
Q ss_pred --------HHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 146 --------LLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 146 --------~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.......+.+++.+.+ .++++.+||++| .+++++++.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~-----~~~~~E~SAkt~----------~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKEL-----GIPYYETSVVTQ----------FGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHh-----CCEEEEcCCCCC----------CCHHHHHHHHHH
Confidence 0001122445555554 368999999998 688999888764
No 290
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.33 E-value=8.4e-12 Score=114.25 Aligned_cols=126 Identities=23% Similarity=0.335 Sum_probs=74.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe---eCCeEEEEEecCChhhhH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE---TKARHYAHVDCPGHADYI 89 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~~~iiDtpGh~~~~ 89 (593)
-.|.++|+.|||||+|+..|...... ...|.......+. ..+..+.++|+|||.+..
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~--------------------~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr 63 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV--------------------PTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR 63 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-----------------------B---SSEEEECCGSSTCGTCECEEEETT-HCCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC--------------------CeeccccCCceEEeecCCCCEEEEEECCCcHHHH
Confidence 46899999999999999999864110 0011111111121 245678999999999997
Q ss_pred HHHHHh---hhcCCEEEEEEECCCC--CChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCH---HHHHHHHHHHHHH
Q psy8869 90 KNMITG---AAQMDGAILVCSAADG--PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDD---EELLELVEIEIRE 156 (593)
Q Consensus 90 ~~~~~~---~~~~d~~ilVvda~~g--~~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~---~~~~~~~~~~~~~ 156 (593)
...... ...+.++|+|||+... ....+-|+|..+.. .+.+.++|+.||.|+..+ ....+.++.++..
T Consensus 64 ~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~ 143 (181)
T PF09439_consen 64 SKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDK 143 (181)
T ss_dssp HHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHH
Confidence 777665 7789999999999751 11334444432221 133446667899998864 3344455556655
Q ss_pred HH
Q psy8869 157 LL 158 (593)
Q Consensus 157 ~l 158 (593)
+.
T Consensus 144 lr 145 (181)
T PF09439_consen 144 LR 145 (181)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 291
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=119.40 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=78.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh------
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH------ 85 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh------ 85 (593)
...|+++|++|+|||||++.|+++..+.....+ +|=.+....|+.+..++.+|||||-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF----------------TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ 231 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF----------------TTKGIHVGHFERGYLRIQVIDTPGLLDRPLE 231 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc----------------cccceeEeeeecCCceEEEecCCcccCCChH
Confidence 357999999999999999999987665544433 2223344557778889999999992
Q ss_pred h--hhHHHHHHhhh-cCCEEEEEEECCC--CCC--hhhHHHHHHHHHcCCCeEEEEEeecCCCCHH
Q psy8869 86 A--DYIKNMITGAA-QMDGAILVCSAAD--GPM--PQTREHILLARQVGVPYIVVFLNKADMVDDE 144 (593)
Q Consensus 86 ~--~~~~~~~~~~~-~~d~~ilVvda~~--g~~--~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~ 144 (593)
+ .--.+.+.+++ -.+++|+++|++. |.. .|..-.-.+-..++.| +++|+||+|..+.+
T Consensus 232 ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~e 296 (346)
T COG1084 232 ERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADEE 296 (346)
T ss_pred HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccchh
Confidence 1 12344455555 5799999999987 333 3333222333344544 67788999999753
No 292
>PLN00023 GTP-binding protein; Provisional
Probab=99.32 E-value=1.5e-11 Score=122.14 Aligned_cols=142 Identities=21% Similarity=0.218 Sum_probs=89.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-------------CC
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-------------KA 74 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-------------~~ 74 (593)
.+...++|+++|+.++|||||+.++....... .....-|.+.....+.+.. ..
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--------------~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~ 82 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--------------RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCccc--------------ccCCceeeeEEEEEEEECCcccccccccccCCce
Confidence 34567899999999999999999998532110 0111223333333333321 12
Q ss_pred eEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc---------------CCCeEEEEEeec
Q psy8869 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV---------------GVPYIVVFLNKA 138 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l---------------~ip~iiVvvNK~ 138 (593)
..+.||||+|+++|...+...++.+|++|+|+|.++.. +......+..+... ++| +++|.||+
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~ 161 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKA 161 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECc
Confidence 45789999999999988888899999999999998722 22222333333332 356 45567999
Q ss_pred CCCCHHH---HHHHHHHHHHHHHhhcCCC
Q psy8869 139 DMVDDEE---LLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 139 Dl~~~~~---~~~~~~~~~~~~l~~~~~~ 164 (593)
|+.+... .......+.+++++..++.
T Consensus 162 DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 162 DIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccccccccccccHHHHHHHHHHcCCC
Confidence 9975421 1011234667777777754
No 293
>PRK13768 GTPase; Provisional
Probab=99.31 E-value=4.4e-11 Score=117.63 Aligned_cols=174 Identities=28% Similarity=0.318 Sum_probs=102.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCC----------------h-hh--hhcCceEEeee------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA----------------P-EE--KARGITINTAH------ 67 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~----------------~-~e--~~~g~t~~~~~------ 67 (593)
..+++.|..|+||||++..|.......+....... +|.. . .+ .+.+...+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~--~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN--LDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE--CCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 46899999999999999999877655432211100 1110 0 00 01011000000
Q ss_pred ---------eEEeeCCeEEEEEecCChhhhHH------HHHHhhhc--CCEEEEEEECCCCCChhhHHHHHHHH-----H
Q psy8869 68 ---------IEYETKARHYAHVDCPGHADYIK------NMITGAAQ--MDGAILVCSAADGPMPQTREHILLAR-----Q 125 (593)
Q Consensus 68 ---------~~~~~~~~~~~iiDtpGh~~~~~------~~~~~~~~--~d~~ilVvda~~g~~~qt~e~l~~~~-----~ 125 (593)
..++..+..+.+||+||+.++.. .....+.. ++++++|+|+..+....+.+....+. .
T Consensus 81 ~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~ 160 (253)
T PRK13768 81 LLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR 160 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH
Confidence 00112234789999999766532 22233333 89999999998876665544433332 5
Q ss_pred cCCCeEEEEEeecCCCCHHHHHHHHHHHHH------------------------HHHhhcCCCCCCceEEEeccCccccC
Q psy8869 126 VGVPYIVVFLNKADMVDDEELLELVEIEIR------------------------ELLNKYEFPGNDIPIIKGSAKLALEG 181 (593)
Q Consensus 126 l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~------------------------~~l~~~~~~~~~~~vi~~Sa~~g~~~ 181 (593)
.++|.++ ++||+|+.+.++. +.....+. +.++..+ ...+++++|++++
T Consensus 161 ~~~~~i~-v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~--- 232 (253)
T PRK13768 161 LGLPQIP-VLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTG--- 232 (253)
T ss_pred cCCCEEE-EEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCC---
Confidence 6888665 5799999875332 11111111 1222333 2468999999997
Q ss_pred CCCCCCcCcHHHHHHHhhhhCC
Q psy8869 182 DTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 182 ~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++|+++|.+.++
T Consensus 233 -------~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 233 -------EGFDELYAAIQEVFC 247 (253)
T ss_pred -------cCHHHHHHHHHHHcC
Confidence 789999999998875
No 294
>KOG0075|consensus
Probab=99.31 E-value=9.9e-12 Score=105.57 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=109.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
+..+.+.++|--+||||||++....+... ..-+.|.......+..+...+.+||.||+.+|.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~------------------edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr 79 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYL------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 79 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccch------------------hhhcccccceeEEeccCceEEEEEecCCCccHH
Confidence 45688999999999999999987532110 011345555556666677778899999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHH----HHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHI----LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l----~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+-.+.+.+++++++|||.+.. -...++-| ......++|.++ .-||.|+.++-.. .++-+-+....+.
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LV-LGnK~d~~~AL~~-----~~li~rmgL~sit 153 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLV-LGNKIDLPGALSK-----IALIERMGLSSIT 153 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEE-ecccccCcccccH-----HHHHHHhCccccc
Confidence 99999999999999999998832 12233322 223335899665 4699999876211 1222222222334
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...+-.+.+|++.. .+++.++++|.++.
T Consensus 154 dREvcC~siScke~----------~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 154 DREVCCFSISCKEK----------VNIDITLDWLIEHS 181 (186)
T ss_pred cceEEEEEEEEcCC----------ccHHHHHHHHHHHh
Confidence 45677889999886 67889999987653
No 295
>KOG0079|consensus
Probab=99.31 E-value=1.5e-11 Score=104.45 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=105.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++..|+|.+++|||+|+-++..... .++. -...|+...+....+..+...+.||||+|+++|...+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF---s~sY-----------itTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF---SGSY-----------ITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc---ccce-----------EEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence 4678999999999999887753211 1110 0122333333444444455677899999999999999
Q ss_pred HHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 93 ITGAAQMDGAILVCSAADGP-MPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
..+++..+++++|.|.+++. +...+..|..+... .+|.++| -||.|..+.... ..++.+.+.... .+.
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLV-GNK~d~~~RrvV---~t~dAr~~A~~m-----gie 145 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLV-GNKNDDPERRVV---DTEDARAFALQM-----GIE 145 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceec-ccCCCCccceee---ehHHHHHHHHhc-----Cch
Confidence 99999999999999999864 56777777777764 5777665 699998764211 112344454443 466
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+|.+|++.. .+++..+.+|..
T Consensus 146 ~FETSaKe~----------~NvE~mF~cit~ 166 (198)
T KOG0079|consen 146 LFETSAKEN----------ENVEAMFHCITK 166 (198)
T ss_pred heehhhhhc----------ccchHHHHHHHH
Confidence 999999987 455555555543
No 296
>KOG0093|consensus
Probab=99.30 E-value=1.4e-11 Score=104.64 Aligned_cols=155 Identities=18% Similarity=0.145 Sum_probs=99.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~~~~~~ 91 (593)
.++.++|+..+|||+++-+......... + -+.-|+....... ++.+ ...+.+|||+|+++|...
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~a--------f------vsTvGidFKvKTv-yr~~kRiklQiwDTagqEryrti 86 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA--------F------VSTVGIDFKVKTV-YRSDKRIKLQIWDTAGQERYRTI 86 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccc--------e------eeeeeeeEEEeEe-eecccEEEEEEEecccchhhhHH
Confidence 5999999999999999987764321110 0 0111333333222 2222 235679999999999999
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHH-HHHHH---HHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTRE-HILLA---RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e-~l~~~---~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
+...++++++.||+.|.++...-...+ .+-.+ .-.+.|.++ +.||||+.++...-. +..+.+..++|+
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvil-vgnKCDmd~eRvis~---e~g~~l~~~LGf---- 158 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVIL-VGNKCDMDSERVISH---ERGRQLADQLGF---- 158 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEE-EecccCCccceeeeH---HHHHHHHHHhCh----
Confidence 999999999999999998743322222 22222 234777555 579999987521111 234556667776
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++.+||+.+ .++..+++.+...
T Consensus 159 -efFEtSaK~N----------inVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 159 -EFFETSAKEN----------INVKQVFERLVDI 181 (193)
T ss_pred -HHhhhccccc----------ccHHHHHHHHHHH
Confidence 4999999987 4566666665443
No 297
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.30 E-value=1e-10 Score=116.45 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=93.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~ 88 (593)
-.++|+++|+.|+|||||+++|.+......... .+.......+.+++......++.++ ..+++|||||..++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~------~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYP------PDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCC------CCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 368999999999999999999975422111100 0001111222333444444445454 46889999994333
Q ss_pred ---------------------HHHHHH-----hhh--cCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 89 ---------------------IKNMIT-----GAA--QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 89 ---------------------~~~~~~-----~~~--~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
+..... .+. .+|+++++++++. +......+.+..+.. ++|. |+|+||+|
T Consensus 77 ~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~v-i~VinK~D 154 (276)
T cd01850 77 INNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNI-IPVIAKAD 154 (276)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCE-EEEEECCC
Confidence 211111 111 4688999999875 666666777777765 7885 45689999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q psy8869 140 MVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (593)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa 175 (593)
+...++. +..+..+.+.++..+ +++++.+.
T Consensus 155 ~l~~~e~-~~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 155 TLTPEEL-KEFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred cCCHHHH-HHHHHHHHHHHHHcC-----CceECCCC
Confidence 9876443 445667777777654 56776554
No 298
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.29 E-value=5.6e-11 Score=112.59 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=87.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe-----eCCeEEEEEecCChhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-----TKARHYAHVDCPGHAD 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~~~iiDtpGh~~ 87 (593)
++|+++|..++|||||+.++....... .....-|.++......+. .....+.||||+|+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--------------~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--------------RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 489999999999999999998532110 011111222333223332 1234678999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----------------------cCCCeEEEEEeecCCCCHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----------------------VGVPYIVVFLNKADMVDDE 144 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----------------------l~ip~iiVvvNK~Dl~~~~ 144 (593)
|.......++.+|++|+|+|.++... .....++..+.. .++| +|+|.||+|+.+..
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~~r 145 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchhhc
Confidence 98888888899999999999988432 222223333322 2467 45567999997642
Q ss_pred HHHH-HHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 145 ELLE-LVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 145 ~~~~-~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
.... .....-..+.++++ .|-+..++...
T Consensus 146 ~~~~~~~~~~~~~ia~~~~-----~~~i~~~c~~~ 175 (202)
T cd04102 146 ESSGNLVLTARGFVAEQGN-----AEEINLNCTNG 175 (202)
T ss_pred ccchHHHhhHhhhHHHhcC-----CceEEEecCCc
Confidence 1111 11112233344444 45677777653
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.28 E-value=6.2e-11 Score=119.66 Aligned_cols=176 Identities=19% Similarity=0.165 Sum_probs=102.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccc----------ccc-CCChhh---hhcCceEEe--e--e---
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSY----------DQI-DAAPEE---KARGITINT--A--H--- 67 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~----------~~~-d~~~~e---~~~g~t~~~--~--~--- 67 (593)
.++.+.|++.|.+|+|||||+.+|.......+..-.... ..+ |+...+ ...+.-+-. + +
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 456789999999999999999999877654432111000 001 111111 111111111 0 0
Q ss_pred ---------eEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 68 ---------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 68 ---------~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
..++..+..+.|+||+|...-.. .....+|.+++|++...|..-|... ...+.+..+ +|+||+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~aDI-iVVNKa 204 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK----KGIMELADL-IVINKA 204 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH----hhhhhhhhe-EEeehh
Confidence 01234578899999999652221 1355799999998754443333211 111222224 457999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcC--CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYE--FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
|+.+... .+....+++..+.... ...+..|++++||+++ .|+++|++.|..+++
T Consensus 205 Dl~~~~~-a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g----------~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 205 DGDNKTA-ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG----------EGIDEIWQAIEDHRA 260 (332)
T ss_pred cccchhH-HHHHHHHHHHHHhcccccccCCCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 9987532 2334445665555322 1124579999999998 789999999988754
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.28 E-value=3.5e-11 Score=116.75 Aligned_cols=169 Identities=20% Similarity=0.247 Sum_probs=87.4
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee---------------------------E
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI---------------------------E 69 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~---------------------------~ 69 (593)
|+|++||||||++..+.+.....++... .-.+|...++......+++... +
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~--~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVY--IVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EE--EEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCce--EEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 6899999999999999988765543222 1235555554444444443211 0
Q ss_pred E-------eeCCeEEEEEecCChhhhHHHHHHhh--------hcCCEEEEEEECCCCCChhh-----HHHHHHHHHcCCC
Q psy8869 70 Y-------ETKARHYAHVDCPGHADYIKNMITGA--------AQMDGAILVCSAADGPMPQT-----REHILLARQVGVP 129 (593)
Q Consensus 70 ~-------~~~~~~~~iiDtpGh~~~~~~~~~~~--------~~~d~~ilVvda~~g~~~qt-----~e~l~~~~~l~ip 129 (593)
+ +.....+.++|||||.++...+..+. ...=++++++|+..-..+.. ...+.....+++|
T Consensus 79 ~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 79 IDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 0 00123799999999888865544433 24567899999975333221 2222334457999
Q ss_pred eEEEEEeecCCCCHH--HH-----------------HHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCc
Q psy8869 130 YIVVFLNKADMVDDE--EL-----------------LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQS 190 (593)
Q Consensus 130 ~iiVvvNK~Dl~~~~--~~-----------------~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~ 190 (593)
++. ++||+|+.+.. .. +..+..++.+++...+. ..+++|+|+.++ .+
T Consensus 159 ~vn-vlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~----------~~ 224 (238)
T PF03029_consen 159 HVN-VLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDG----------EG 224 (238)
T ss_dssp EEE-EE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTT----------TT
T ss_pred EEE-eeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCCh----------HH
Confidence 776 57999999721 11 12222334444444332 238999999997 78
Q ss_pred HHHHHHHhhhh
Q psy8869 191 ILSLSKALDTY 201 (593)
Q Consensus 191 ~~~ll~~l~~~ 201 (593)
+.+|+..+++.
T Consensus 225 ~~~L~~~id~a 235 (238)
T PF03029_consen 225 MEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 301
>KOG1191|consensus
Probab=99.27 E-value=1.7e-11 Score=124.77 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=108.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~- 88 (593)
+..+.|+|+|.+|+|||||+|+|+....... ....|.|-|.-...++.++..+.++||+|..+-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIV---------------Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIV---------------SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES 330 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEe---------------CCCCCcchhhheeEeecCCeEEEEEecccccccc
Confidence 3458999999999999999999986533222 224588888888889999999999999996551
Q ss_pred --------HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCC-----------CeEEEEEeecCCCCH-HHHHH
Q psy8869 89 --------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV-----------PYIVVFLNKADMVDD-EELLE 148 (593)
Q Consensus 89 --------~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~i-----------p~iiVvvNK~Dl~~~-~~~~~ 148 (593)
+......+..+|.+++|+||..+.+.+.......+...+. .++|+++||.|+.++ .+...
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~ 410 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK 410 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC
Confidence 2222344568999999999988776666655555555432 445667899998765 11100
Q ss_pred HHHHHHHHHHhhcCCCCCCce-EEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 149 LVEIEIRELLNKYEFPGNDIP-IIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~-vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
....+....+. ...| +..+|+.++ +++..|.++|.+.+
T Consensus 411 ----~~~~~~~~~~~--~~~~i~~~vs~~tk----------eg~~~L~~all~~~ 449 (531)
T KOG1191|consen 411 ----IPVVYPSAEGR--SVFPIVVEVSCTTK----------EGCERLSTALLNIV 449 (531)
T ss_pred ----CceeccccccC--cccceEEEeeechh----------hhHHHHHHHHHHHH
Confidence 00111111111 1334 445888887 67888888876643
No 302
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.27 E-value=3.2e-11 Score=101.46 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=71.5
Q ss_pred cccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-----------CCcccccCCCEEEEEEEeCceeee
Q psy8869 303 PHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-----------KNKEMVMPGDNVLITVRLINPIAM 371 (593)
Q Consensus 303 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~gd~~~v~~~~~~p~~~ 371 (593)
++.+|+|+++||+. .||.+|+.+.+|+++....|++..+ .++.+|..||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~------~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDE------EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred ccceeeEEEEEecC------cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEe
Confidence 46789999999984 3799999999999999998887521 246789999999999999999999
Q ss_pred ecC------CeEEE--eeCCeEEEeeee
Q psy8869 372 EEG------LRFAI--REGVQQFIQDNL 391 (593)
Q Consensus 372 ~~~------~r~vl--r~~~~~i~~G~v 391 (593)
+++ +||+| |++|.|+|+|.|
T Consensus 76 d~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred cchhhCCCcceEEEEECCCCcEEEEEeC
Confidence 986 79999 556999999975
No 303
>KOG0090|consensus
Probab=99.27 E-value=6.9e-11 Score=107.62 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=105.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..-.|.++|..|||||+|+-.|++.... ..-.++......+..++....++|.|||.+...
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~-------------------~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR-------------------GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRR 97 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc-------------------CeeeeeccceeeEeecCcceEEEeCCCcHHHHH
Confidence 3367999999999999999998854110 001223334445566667789999999999988
Q ss_pred HHHHhhh---cCCEEEEEEECCCCC--ChhhHHHHHHHH--H---cCCCeEEEEEeecCCCCH---HHHHHHHHHHHHHH
Q psy8869 91 NMITGAA---QMDGAILVCSAADGP--MPQTREHILLAR--Q---VGVPYIVVFLNKADMVDD---EELLELVEIEIREL 157 (593)
Q Consensus 91 ~~~~~~~---~~d~~ilVvda~~g~--~~qt~e~l~~~~--~---l~ip~iiVvvNK~Dl~~~---~~~~~~~~~~~~~~ 157 (593)
.....+. .+-++++|||+..-. ....-|.+.-.. . .+.|+++++.||.|+..+ +.+.+.++.++..+
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 8888776 789999999997632 123334432211 1 244556778899998753 44555566666554
Q ss_pred HhhcC---------------------------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 158 LNKYE---------------------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 158 l~~~~---------------------------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+.-. +...++.|.+.|++++ +++++.+|+.+.
T Consensus 178 r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-----------~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 178 RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-----------EIDQWESWIREA 237 (238)
T ss_pred HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-----------ChHHHHHHHHHh
Confidence 43211 0123566788888775 577888887654
No 304
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.25 E-value=1.2e-11 Score=107.17 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=69.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++|+.|+|||||+++|.+.... +....+...+.++.............+.+||++|++.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 6999999999999999999865322 0011111223344433334444445588999999988876544
Q ss_pred HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc-----CCCeEEEEEeecC
Q psy8869 94 TGAAQMDGAILVCSAADGP-MPQTREHILLARQV-----GVPYIVVFLNKAD 139 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l-----~ip~iiVvvNK~D 139 (593)
..+..+|++++|+|+++.. ..+..+.+..+..+ .+| ++|+.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 4588999999999998732 12222222222222 477 455679998
No 305
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.25 E-value=8.8e-11 Score=96.19 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=79.2
Q ss_pred CCCCeeEEEEEEEEeC--------CCcEEEEEEEEeeeEecCCEEEEeecC----------CceEEEEEEEEecceecce
Q psy8869 209 IDGAFLLPVEDVFSIS--------GRGTVVTGRVERGIVRVGEELEIIGIK----------DTVKTTCTGVEMFRKLLDQ 270 (593)
Q Consensus 209 ~~~~~~~~i~~~~~~~--------~~G~v~~G~v~~G~l~~gd~v~i~p~~----------~~~~~~v~si~~~~~~~~~ 270 (593)
.++|++|+|.++|.+. .+|.|+.|++.+|.|++||++.|.|.- .....+|.||+..+..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4689999999999998 899999999999999999999998641 1146789999999999999
Q ss_pred eeecceEEE---EeccCCccCCccceEEecC
Q psy8869 271 GQAGDNIGL---LLRGTKREDVERGQVLAKP 298 (593)
Q Consensus 271 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~ 298 (593)
|.||+.+++ ...++.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 5667788899999999875
No 306
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.22 E-value=3.4e-10 Score=109.43 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=80.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~ 88 (593)
..++|+++|..|+|||||+++|.+....... ...+............ ...+.+|||+|+++|
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGY----------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccC----------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH
Confidence 3489999999999999999999865332211 1112222222222222 445789999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCC-CCC-hhhHHHHHHHHHcC---CCeEEEEEeecCCCCHH
Q psy8869 89 IKNMITGAAQMDGAILVCSAAD-GPM-PQTREHILLARQVG---VPYIVVFLNKADMVDDE 144 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~-g~~-~qt~e~l~~~~~l~---ip~iiVvvNK~Dl~~~~ 144 (593)
...+..+...++++++++|... ... ..+.+....+..+. .| ++++.||+|+....
T Consensus 68 ~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 68 RSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 9999999999999999999986 333 33444444555544 56 55567999998763
No 307
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.20 E-value=7.3e-10 Score=106.22 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=97.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCChhhhHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh~~~~~~~ 92 (593)
+|+++|..+|||||....+.+....... ..-|.|++.....+.. +...+.+||+||+..|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT---------------~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT---------------LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG---------------GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc---------------cccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 6899999999999999998854321110 1115566666555543 45589999999998887663
Q ss_pred -----HHhhhcCCEEEEEEECCCCCChhhHHHH----HHHHHc--CCCeEEEEEeecCCCCHH---HHHHHHHHHHHHHH
Q psy8869 93 -----ITGAAQMDGAILVCSAADGPMPQTREHI----LLARQV--GVPYIVVFLNKADMVDDE---ELLELVEIEIRELL 158 (593)
Q Consensus 93 -----~~~~~~~d~~ilVvda~~g~~~qt~e~l----~~~~~l--~ip~iiVvvNK~Dl~~~~---~~~~~~~~~~~~~l 158 (593)
..-.+.++++|+|+|+...........+ ..+... +++.. |.+.|||+...+ +.++.+.+.+.+.+
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~-vfiHK~D~l~~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVF-VFIHKMDLLSEDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEE-EEEE-CCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEE-EEEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 3345689999999999854343333333 333332 45544 458999998763 45566677777777
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...+.. .+.++.+|..+ .++-+.+..+...+
T Consensus 145 ~~~~~~--~~~~~~TSI~D-----------~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 145 EDLGIE--DITFFLTSIWD-----------ESLYEAWSKIVQKL 175 (232)
T ss_dssp HHTT-T--SEEEEEE-TTS-----------THHHHHHHHHHHTT
T ss_pred hhcccc--ceEEEeccCcC-----------cHHHHHHHHHHHHH
Confidence 766653 57899999987 35555555555443
No 308
>KOG0091|consensus
Probab=99.19 E-value=2.3e-10 Score=99.11 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=93.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChhhhH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADYI 89 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~~~~ 89 (593)
++++.++|+.-+|||+|+...+.+....-+.. .-|+..-...+.++ +++ ++.+|||+|+++|.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdp--------------tvgvdffarlie~~-pg~riklqlwdtagqerfr 72 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDP--------------TVGVDFFARLIELR-PGYRIKLQLWDTAGQERFR 72 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCC--------------ccchHHHHHHHhcC-CCcEEEEEEeeccchHHHH
Confidence 57899999999999999999986532111100 00111101111111 222 45699999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHH-HcC---CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADG-PMPQTREHILLAR-QVG---VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~-~l~---ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+-++++++-++++|.|.++- .+......+..+. ..+ .+.|.+|-.|+|+.+..+. ..++-+.+.+..++
T Consensus 73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaEklAa~hgM- 148 (213)
T KOG0091|consen 73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAEKLAASHGM- 148 (213)
T ss_pred HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHHHHHHhcCc-
Confidence 9999999999999999999872 2222222233332 233 3446666799999864221 22355667777665
Q ss_pred CCCceEEEeccCccc
Q psy8869 165 GNDIPIIKGSAKLAL 179 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~ 179 (593)
.++.+||++|.
T Consensus 149 ----~FVETSak~g~ 159 (213)
T KOG0091|consen 149 ----AFVETSAKNGC 159 (213)
T ss_pred ----eEEEecccCCC
Confidence 59999999983
No 309
>KOG0071|consensus
Probab=99.19 E-value=4.1e-10 Score=95.07 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=105.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+.++|..+|-.+|||||++-.|.-..... .-.|.........+.+..++.||..|+.+..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-------------------~ipTvGFnvetVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-------------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-------------------cccccceeEEEEEeeeeEEeeeeccCchhhh
Confidence 457899999999999999998885321100 0112222233345567788999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADG-PMPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
+.+..++.+..++|+|+|+.+. .....++-+..+. ....+.+|+ .||-|+.++- . -+++.+++..-...
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lvl-ANkQDlp~A~-~----pqei~d~leLe~~r 149 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILIL-ANKQDLPDAM-K----PQEIQDKLELERIR 149 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEE-ecCccccccc-C----HHHHHHHhcccccc
Confidence 9999999999999999998763 1122222221111 124565554 5999998751 1 12444444433333
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+...-+.|+||.+| .++.+-+.+|.+.+.
T Consensus 150 ~~~W~vqp~~a~~g----------dgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 150 DRNWYVQPSCALSG----------DGLKEGLSWLSNNLK 178 (180)
T ss_pred CCccEeeccccccc----------hhHHHHHHHHHhhcc
Confidence 34566889999998 678888888876543
No 310
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.17 E-value=4.6e-10 Score=109.74 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=94.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC--------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG-------- 84 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-------- 84 (593)
..|+++|-+|+|||||+++++.+..+.+...+.. ..-++..... .....+++-|.||
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT--------------L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT--------------LVPNLGVVRV-DGGESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCcccc--------------ccCcccEEEe-cCCCcEEEecCcccccccccC
Confidence 4689999999999999999998766655444321 1122333333 4566799999999
Q ss_pred ---hhhhHHHHHHhhhcCCEEEEEEECCCCCC----hhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHH
Q psy8869 85 ---HADYIKNMITGAAQMDGAILVCSAADGPM----PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEI 152 (593)
Q Consensus 85 ---h~~~~~~~~~~~~~~d~~ilVvda~~g~~----~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~ 152 (593)
-.+|++.. ..+-..+.|||.+.... .+-......+.+ .+.|.+| |.||||++..++..+..+.
T Consensus 225 ~GLG~~FLrHI----ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~iv-v~NKiD~~~~~e~~~~~~~ 299 (369)
T COG0536 225 VGLGLRFLRHI----ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIV-VLNKIDLPLDEEELEELKK 299 (369)
T ss_pred CCccHHHHHHH----HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEE-EEeccCCCcCHHHHHHHHH
Confidence 24555544 46889999999985321 111111122222 3567655 5799997665555555444
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+.+. .+. .+..++||.++ .++++|+..+.+.+.
T Consensus 300 ~l~~~---~~~----~~~~~ISa~t~----------~g~~~L~~~~~~~l~ 333 (369)
T COG0536 300 ALAEA---LGW----EVFYLISALTR----------EGLDELLRALAELLE 333 (369)
T ss_pred HHHHh---cCC----Ccceeeehhcc----------cCHHHHHHHHHHHHH
Confidence 44332 222 22333999997 678888777766543
No 311
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=3.4e-10 Score=109.70 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=64.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~- 88 (593)
.....++++|.+++|||||++.||+...+.+...+ +|.......+++++..+.++|+||--.-
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F----------------TTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF----------------TTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc----------------eecccccceEeecCceEEEEcCcccccCc
Confidence 35678999999999999999999976544433222 3455555668889999999999983211
Q ss_pred ------HHHHHHhhhcCCEEEEEEECCCC
Q psy8869 89 ------IKNMITGAAQMDGAILVCSAADG 111 (593)
Q Consensus 89 ------~~~~~~~~~~~d~~ilVvda~~g 111 (593)
-+..++.++.||.+++|+|+...
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 14466777899999999999753
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.11 E-value=3.9e-10 Score=107.41 Aligned_cols=171 Identities=21% Similarity=0.183 Sum_probs=96.7
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccc----------ccccc-CCCh---hhhhcCceEEeeee----
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK----------SYDQI-DAAP---EEKARGITINTAHI---- 68 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~----------~~~~~-d~~~---~e~~~g~t~~~~~~---- 68 (593)
....+.+.|+|.|.+|+|||||++.|.......+..-+. .-.+| |+.. +....++-+-...-
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 345577899999999999999999998776554321100 00111 2221 11222332211100
Q ss_pred ------------EEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhH--HHHHHHHHcCCCeEEEE
Q psy8869 69 ------------EYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQVGVPYIVVF 134 (593)
Q Consensus 69 ------------~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~--e~l~~~~~l~ip~iiVv 134 (593)
-++..++++.|+.|.|--.---. -...+|..++|+.+..|-.-|.. -.+++ ..++ |
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~-v 173 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIF-V 173 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEE-E
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEE-E
Confidence 12345788999999983322211 24579999999998876554442 23333 3355 5
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHhhcC--CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 135 LNKADMVDDEELLELVEIEIRELLNKYE--FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 135 vNK~Dl~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
|||+|+...+. ...+++..++... -..|..|++.+||.++ .|+++|+++|.++
T Consensus 174 VNKaD~~gA~~----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~----------~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 174 VNKADRPGADR----TVRDLRSMLHLLREREDGWRPPVLKTSALEG----------EGIDELWEAIDEH 228 (266)
T ss_dssp EE--SHHHHHH----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTT----------BSHHHHHHHHHHH
T ss_pred EeCCChHHHHH----HHHHHHHHHhhccccccCCCCCEEEEEeCCC----------CCHHHHHHHHHHH
Confidence 79999555433 3345555554332 2346789999999997 7899999998764
No 313
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.11 E-value=1.9e-09 Score=108.96 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=51.1
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee-----------e----eEEe-eCCeEEE
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-----------H----IEYE-TKARHYA 78 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-----------~----~~~~-~~~~~~~ 78 (593)
|+++|.+|+|||||+++|++.....+...+ ...+...|+..-.. . .... .....+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pf--------tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~ 72 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPF--------TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVE 72 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCC--------ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEE
Confidence 589999999999999999965322111111 00011111111000 0 0000 1224688
Q ss_pred EEecCCh----hhhH---HHHHHhhhcCCEEEEEEECCC
Q psy8869 79 HVDCPGH----ADYI---KNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 79 iiDtpGh----~~~~---~~~~~~~~~~d~~ilVvda~~ 110 (593)
+||+||. +++. ...+..++.+|++++|+|+..
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999996 3332 345566889999999999973
No 314
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.11 E-value=1.1e-09 Score=87.95 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=71.1
Q ss_pred EEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCC-ceEEEEEEEEecceecceeeecceEEEEeccCCccCCccce
Q psy8869 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (593)
Q Consensus 215 ~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~-~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~ 293 (593)
..|.++|++++.|+++.|+|.+|.+++|+.+.+.|.+. ....+|.||+.+++.+++|.+|+.|++.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 46889999888899999999999999999999998642 156899999999999999999999999999876 899999
Q ss_pred EE
Q psy8869 294 VL 295 (593)
Q Consensus 294 vl 295 (593)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 315
>KOG0097|consensus
Probab=99.10 E-value=1.4e-09 Score=91.66 Aligned_cols=144 Identities=22% Similarity=0.246 Sum_probs=95.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
-.++-.++|..|+|||.|+..++.... |...++ .-|+......+........+.+|||+|+++|..
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf------------madcph--tigvefgtriievsgqkiklqiwdtagqerfra 75 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF------------MADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 75 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH------------hhcCCc--ccceecceeEEEecCcEEEEEEeecccHHHHHH
Confidence 467889999999999999999886421 211111 112222222233333344567999999999999
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHH----HHHHHcCCCe--EEEEEeecCCCCHH-HHHHHHHHHHHHHHhhcCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHI----LLARQVGVPY--IVVFLNKADMVDDE-ELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l----~~~~~l~ip~--iiVvvNK~Dl~~~~-~~~~~~~~~~~~~l~~~~~ 163 (593)
-+.++++++-++++|.|.+. ..|-.|+ .-++.+--|. ++++-||.|+.+.. ..++ +.+++....+
T Consensus 76 vtrsyyrgaagalmvyditr---rstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye----eak~faeeng- 147 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE----EAKEFAEENG- 147 (215)
T ss_pred HHHHHhccccceeEEEEehh---hhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH----HHHHHHhhcC-
Confidence 99999999999999999987 3344443 4455554443 44456999987542 2233 3345555544
Q ss_pred CCCCceEEEeccCcccc
Q psy8869 164 PGNDIPIIKGSAKLALE 180 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~ 180 (593)
..|+..||++|.|
T Consensus 148 ----l~fle~saktg~n 160 (215)
T KOG0097|consen 148 ----LMFLEASAKTGQN 160 (215)
T ss_pred ----eEEEEecccccCc
Confidence 5699999999843
No 316
>KOG1532|consensus
Probab=99.08 E-value=7e-10 Score=104.63 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=102.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe-----------------------
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT----------------------- 65 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~----------------------- 65 (593)
.+....|.++|..||||||++.+|...+....... +...+|..-.+...+..+++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~pp--YviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPP--YVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCC--eEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 34567899999999999999999998766543221 11223333333322222222
Q ss_pred --eee--EE---------eeCCeEEEEEecCChhhhHHHHHHhh--------hcCCEEEEEEECCCCCChhhHH-HH---
Q psy8869 66 --AHI--EY---------ETKARHYAHVDCPGHADYIKNMITGA--------AQMDGAILVCSAADGPMPQTRE-HI--- 120 (593)
Q Consensus 66 --~~~--~~---------~~~~~~~~iiDtpGh~~~~~~~~~~~--------~~~d~~ilVvda~~g~~~qt~e-~l--- 120 (593)
..+ .| ..+...+.+|||||+.+-.....+|. ..+-++++|+|....-.+.|-- .+
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 110 01 11345689999999765533322221 2456789999987654443321 22
Q ss_pred -HHHHHcCCCeEEEEEeecCCCCHHHH------HHHHHHHHHH---------------HHhhcCCCCCCceEEEeccCcc
Q psy8869 121 -LLARQVGVPYIVVFLNKADMVDDEEL------LELVEIEIRE---------------LLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 121 -~~~~~l~ip~iiVvvNK~Dl~~~~~~------~~~~~~~~~~---------------~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
.++....+|. ||+.||+|+.+.+-. ++..++.+++ .|..+ -..+.++.+|+.+|
T Consensus 174 cSilyktklp~-ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF---Y~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 174 CSILYKTKLPF-IVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEF---YRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHhccCCe-EEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHH---HhhCceEEEecccC
Confidence 2334458895 556799999875322 2222222221 11111 13678999999998
Q ss_pred ccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 179 LEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 179 ~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.|+++++.++...
T Consensus 250 ----------~G~ddf~~av~~~ 262 (366)
T KOG1532|consen 250 ----------EGFDDFFTAVDES 262 (366)
T ss_pred ----------CcHHHHHHHHHHH
Confidence 6788888877643
No 317
>KOG0081|consensus
Probab=99.08 E-value=8.5e-11 Score=101.13 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=101.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---------CeEEEEEecC
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---------ARHYAHVDCP 83 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---------~~~~~iiDtp 83 (593)
++...+|..|+||||++-+.+.... ...+.. .-|+...-....+... ..++.+|||+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F---~~qFIs-----------TVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTA 75 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKF---NTQFIS-----------TVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTA 75 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcc---cceeEE-----------EeecccccceEEEeccCCCCCCcceEEEEeeeccc
Confidence 5778899999999999877663211 001100 0011111111111111 1246699999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCC-CChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADG-PMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g-~~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
|+++|...+....+.|-+.+|+.|-+.. .+-.++..+..+... .-|.++++-||+|+.+.....+ .+...+.+
T Consensus 76 GQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~---~qa~~La~ 152 (219)
T KOG0081|consen 76 GQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE---DQAAALAD 152 (219)
T ss_pred cHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH---HHHHHHHH
Confidence 9999999999889999999999999862 333444444444332 5688998999999987532222 24556666
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+++ +|.|.+||-+|.|.. ..++.|++.+...
T Consensus 153 kyg-----lPYfETSA~tg~Nv~------kave~LldlvM~R 183 (219)
T KOG0081|consen 153 KYG-----LPYFETSACTGTNVE------KAVELLLDLVMKR 183 (219)
T ss_pred HhC-----CCeeeeccccCcCHH------HHHHHHHHHHHHH
Confidence 665 689999999985432 3455666665443
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.07 E-value=9.4e-10 Score=91.33 Aligned_cols=137 Identities=24% Similarity=0.287 Sum_probs=91.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----hhhhH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----HADYI 89 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----h~~~~ 89 (593)
+|+++|.+++|||||++.|-+.... + .-|. ..+++++ -.||||| |..+-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--------y------------kKTQ-----Ave~~d~--~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--------Y------------KKTQ-----AVEFNDK--GDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--------h------------cccc-----eeeccCc--cccCCchhhhhhhHHH
Confidence 6899999999999999999743110 0 0111 1122221 2599999 66666
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
...+.....+|.+++|-+++++...- --.++.....| .|=+|+|.|+.+.++ .+ ..+.+|...| .-|
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f---~p~f~~~~~k~-vIgvVTK~DLaed~d-I~----~~~~~L~eaG----a~~ 122 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRF---PPGFLDIGVKK-VIGVVTKADLAEDAD-IS----LVKRWLREAG----AEP 122 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccC---Ccccccccccc-eEEEEecccccchHh-HH----HHHHHHHHcC----Ccc
Confidence 66666677899999999999854321 11223333445 555689999996432 22 3456666666 358
Q ss_pred EEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 170 vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+|.+|+.+. .|+++|+++|..
T Consensus 123 IF~~s~~d~----------~gv~~l~~~L~~ 143 (148)
T COG4917 123 IFETSAVDN----------QGVEELVDYLAS 143 (148)
T ss_pred eEEEeccCc----------ccHHHHHHHHHh
Confidence 999999885 689999998875
No 319
>KOG0088|consensus
Probab=99.07 E-value=8.4e-10 Score=95.00 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=99.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
+.-.++|+++|.-=+|||+|+-+....... +.|- ..-..+......+++....++.||||+|+++|
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn------------~kHl--sTlQASF~~kk~n~ed~ra~L~IWDTAGQErf 75 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFN------------CKHL--STLQASFQNKKVNVEDCRADLHIWDTAGQERF 75 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcc------------hhhH--HHHHHHHhhcccccccceeeeeeeeccchHhh
Confidence 345689999999999999999877643110 0000 00000011112233334456789999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHH-HHHHcC--CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHIL-LARQVG--VPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~-~~~~l~--ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
-..-.-+++.+|+++||.|.++.- +...+.... +-..+| +. +++|-||+|+..... ...++...+....+
T Consensus 76 HALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEeeR~---Vt~qeAe~YAesvG-- 149 (218)
T KOG0088|consen 76 HALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEEERQ---VTRQEAEAYAESVG-- 149 (218)
T ss_pred hccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHHhhh---hhHHHHHHHHHhhc--
Confidence 887777889999999999999833 333333333 333344 44 344569999875421 12234444555444
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
...+.+||+.+ .|+.+|++.|...
T Consensus 150 ---A~y~eTSAk~N----------~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 150 ---ALYMETSAKDN----------VGISELFESLTAK 173 (218)
T ss_pred ---hhheecccccc----------cCHHHHHHHHHHH
Confidence 45889999987 6888888877654
No 320
>PTZ00099 rab6; Provisional
Probab=99.06 E-value=1.3e-09 Score=101.32 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=76.9
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH-c--CCCeEEEEEeecCCCCHHHHHH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-V--GVPYIVVFLNKADMVDDEELLE 148 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~-l--~ip~iiVvvNK~Dl~~~~~~~~ 148 (593)
....+.||||||+++|...+...++.+|++|+|+|+++.. +....+++..+.. . ++| +|++.||+|+.+.....
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~- 104 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKVT- 104 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCCC-
Confidence 3456789999999999988888889999999999998842 2233333333322 2 345 55678999986421110
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
..+...+.... ..+++++||++| .++.+++++|...++.
T Consensus 105 --~~e~~~~~~~~-----~~~~~e~SAk~g----------~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 105 --YEEGMQKAQEY-----NTMFHETSAKAG----------HNIKVLFKKIAAKLPN 143 (176)
T ss_pred --HHHHHHHHHHc-----CCEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 11222333332 356899999998 6899999999887764
No 321
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.06 E-value=6.1e-09 Score=101.73 Aligned_cols=120 Identities=12% Similarity=0.057 Sum_probs=73.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
....++|+++|.+|+|||||+|+|++....... ...+.|..........++..+.+|||||..+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~---------------~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS---------------AFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC---------------CCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 456799999999999999999999964211100 01133455555555667888999999995444
Q ss_pred H------HH----HHHhhh--cCCEEEEEEECCCC-CChhhHHHHHHHHH-cCC---CeEEEEEeecCCCCH
Q psy8869 89 I------KN----MITGAA--QMDGAILVCSAADG-PMPQTREHILLARQ-VGV---PYIVVFLNKADMVDD 143 (593)
Q Consensus 89 ~------~~----~~~~~~--~~d~~ilVvda~~g-~~~qt~e~l~~~~~-l~i---p~iiVvvNK~Dl~~~ 143 (593)
. .. ....+. ..|.+++|...+.. ........+..+.. +|. .+++|++||+|...+
T Consensus 93 ~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 93 VMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 1 11 111222 56888888655542 22333334433332 342 357778999998643
No 322
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.04 E-value=1.2e-09 Score=99.17 Aligned_cols=165 Identities=13% Similarity=0.181 Sum_probs=91.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhh--------cCceEE-eeee------------EE
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA--------RGITIN-TAHI------------EY 70 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~--------~g~t~~-~~~~------------~~ 70 (593)
.+.|.+.|++|||||||+.+++..+.+..+-........-....++- .+++.. .++. ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 48999999999999999999998776553222111111111111111 111111 1110 01
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHH-HHHH
Q psy8869 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLEL 149 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~-~~~~ 149 (593)
......+.||.+.|. .. ...+.--..+..++|||.++|...--+-+=.+.+ ..++ +|||.|+.++-. ..+.
T Consensus 93 ~~~~~Dll~iEs~GN--L~-~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~----aDll-VInK~DLa~~v~~dlev 164 (202)
T COG0378 93 DFPDLDLLFIESVGN--LV-CPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK----ADLL-VINKTDLAPYVGADLEV 164 (202)
T ss_pred cCCcCCEEEEecCcc--ee-cccCcchhhceEEEEEECCCCCCCcccCCCceeE----eeEE-EEehHHhHHHhCccHHH
Confidence 122357889999992 11 1111111234899999999986532221100000 1244 589999987621 1222
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+... .+..+ .+.||+.+|+++| +|++++++++...
T Consensus 165 m~~d----a~~~n---p~~~ii~~n~ktg----------~G~~~~~~~i~~~ 199 (202)
T COG0378 165 MARD----AKEVN---PEAPIIFTNLKTG----------EGLDEWLRFIEPQ 199 (202)
T ss_pred HHHH----HHHhC---CCCCEEEEeCCCC----------cCHHHHHHHHHhh
Confidence 2222 22222 3789999999998 7999999988653
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.03 E-value=5.5e-09 Score=100.76 Aligned_cols=178 Identities=20% Similarity=0.168 Sum_probs=105.9
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCC----------cccccccc-CCChhhhh---cCceEEe-------
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG----------EAKSYDQI-DAAPEEKA---RGITINT------- 65 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~----------~~~~~~~~-d~~~~e~~---~g~t~~~------- 65 (593)
....+...|+|.|.+|+|||||++.|.......+.. .+..-..| |+...+.. .|.-+-.
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 344566799999999999999999998776554421 11001111 22211111 1111100
Q ss_pred ---ee------eEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe
Q psy8869 66 ---AH------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136 (593)
Q Consensus 66 ---~~------~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN 136 (593)
+. .-++-.++.+.|+.|-|-..---. -...+|..++|.=+..|-.-|... +-.+.+--++ |||
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK----~GimEiaDi~-vIN 197 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIK----AGIMEIADII-VIN 197 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHH----hhhhhhhhee-eEe
Confidence 00 012334788999999884322111 123589999998777766555542 2222333355 579
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 137 KADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
|+|+...+....++...+........-++|..|++.+||.+| .|+++|++++.++.
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g----------~Gi~~L~~ai~~h~ 253 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEG----------EGIDELWDAIEDHR 253 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccC----------CCHHHHHHHHHHHH
Confidence 999777655555555444433322333467899999999998 68999999987764
No 324
>KOG0072|consensus
Probab=99.03 E-value=4.2e-10 Score=95.44 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=103.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
...+|.++|..|+||+|++-+|-..... ...-|+........+.+-.+.+||..|+.....
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-------------------ttkPtigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-------------------TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-------------------ccCCCCCcCccccccccccceeeEccCcccccH
Confidence 6789999999999999987766422111 112233344444555677789999999999999
Q ss_pred HHHHhhhcCCEEEEEEECCCCC----ChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGP----MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~----~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
-+..++...|++|+|||+.+-. .....-.+..-..+.-..++|+.||+|....... +++...|..-.+...
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-----~E~~~~L~l~~Lk~r 152 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-----SEVLKMLGLQKLKDR 152 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH-----HHHHHHhChHHHhhh
Confidence 9999999999999999998722 1211111111222333557777899998765221 122222221122234
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+.++..||.+| .|+++.++||.+-+
T Consensus 153 ~~~Iv~tSA~kg----------~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 153 IWQIVKTSAVKG----------EGLDPAMDWLQRPL 178 (182)
T ss_pred eeEEEeeccccc----------cCCcHHHHHHHHHH
Confidence 578999999998 68888899887644
No 325
>KOG0074|consensus
Probab=99.01 E-value=2.1e-09 Score=90.98 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=96.7
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCChh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGHA 86 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh~ 86 (593)
++...++|.++|--++||||++..|.+.....- -+..|. .....+++ ..++++||..|+.
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hl---------------tpT~GF----n~k~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL---------------TPTNGF----NTKKVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhc---------------cccCCc----ceEEEeecCcEEEEEEecCCcc
Confidence 456779999999999999999999974321110 011122 22233443 4789999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
....-+..++...|..|+|||+++ ..+..+.+|+..+. ...+|..|. .||-|+... ...+++ ..-+...
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf-ankQdllta-a~~eei----a~klnl~ 147 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF-ANKQDLLTA-AKVEEI----ALKLNLA 147 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh-hhhhHHHhh-cchHHH----HHhcchh
Confidence 999889889999999999999887 34455555553333 346887775 599998754 111111 1112222
Q ss_pred CCCCCCceEEEeccCccc
Q psy8869 162 EFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~ 179 (593)
++......+-.+||+++.
T Consensus 148 ~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 148 GLRDRSWHIQECSALSLE 165 (185)
T ss_pred hhhhceEEeeeCcccccc
Confidence 233345678889999873
No 326
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.98 E-value=1.2e-08 Score=106.20 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=51.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee--EE--------------------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI--EY-------------------- 70 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~~-------------------- 70 (593)
++|+++|.+|+|||||+++|++.....+... +.|++.... ..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~----------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCC----------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 5899999999999999999996533211111 112111110 00
Q ss_pred --eeCCeEEEEEecCCh----hh---hHHHHHHhhhcCCEEEEEEECC
Q psy8869 71 --ETKARHYAHVDCPGH----AD---YIKNMITGAAQMDGAILVCSAA 109 (593)
Q Consensus 71 --~~~~~~~~iiDtpGh----~~---~~~~~~~~~~~~d~~ilVvda~ 109 (593)
......+.|+|+||- .+ .....+..++.+|++++|+|+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 011245789999993 22 2335566688999999999997
No 327
>KOG0083|consensus
Probab=98.98 E-value=2.5e-10 Score=95.26 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=86.0
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhhHHHHHH
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADYIKNMIT 94 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~~~~~~~ 94 (593)
++|....|||.|+-+.-.+ .+....+. +.+.|+.....++.+ ...+.+|||+|+++|..-+.+
T Consensus 2 llgds~~gktcllir~kdg-------afl~~~fi--------stvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG-------AFLAGNFI--------STVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEeccC-------ceecCcee--------eeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 5799999999987554321 11111111 012222222223333 445679999999999999999
Q ss_pred hhhcCCEEEEEEECCC-CCChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 95 GAAQMDGAILVCSAAD-GPMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 95 ~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
+++.+|+.+|+.|..+ ..+......+..+... .+..++ +-||||+..+...- ..+-+.+.+.+ .+||
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~l-lgnk~d~a~er~v~---~ddg~kla~~y-----~ipf 137 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALML-LGNKCDLAHERAVK---RDDGEKLAEAY-----GIPF 137 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhh-hccccccchhhccc---cchHHHHHHHH-----CCCc
Confidence 9999999999999876 3444444444444333 233344 46999997641110 11223334444 4789
Q ss_pred EEeccCccccCC
Q psy8869 171 IKGSAKLALEGD 182 (593)
Q Consensus 171 i~~Sa~~g~~~~ 182 (593)
..+||++|.|.+
T Consensus 138 metsaktg~nvd 149 (192)
T KOG0083|consen 138 METSAKTGFNVD 149 (192)
T ss_pred eeccccccccHh
Confidence 999999996543
No 328
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.98 E-value=1.5e-08 Score=102.45 Aligned_cols=174 Identities=20% Similarity=0.181 Sum_probs=94.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccc----------ccc-CCChhh---hhcCceEEeee-------
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSY----------DQI-DAAPEE---KARGITINTAH------- 67 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~----------~~~-d~~~~e---~~~g~t~~~~~------- 67 (593)
..+...|+++|.+|+|||||+..|.......+....... ..+ ++.... ...+.-+....
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 346678999999999999999999876544321110000 000 110000 00111110000
Q ss_pred ---------eEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 68 ---------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 68 ---------~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
..++..++.+.|+||||...-. ...+..+|.++++.+...+. ..+.+. ....++|.++ ++||+
T Consensus 111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~-~~l~~~~~iv-v~NK~ 182 (300)
T TIGR00750 111 LSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIK-AGLMEIADIY-VVNKA 182 (300)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHH-HHHhhhccEE-EEEcc
Confidence 0123457889999999954222 23356789998886654322 111111 1124677655 57999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcC--CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYE--FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
|+.+.+. .......+...+..+. ...+..|++++||+++ .++++|+++|...
T Consensus 183 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g----------~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 183 DGEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVEG----------RGIDELWDAIEEH 236 (300)
T ss_pred cccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccCC----------CCHHHHHHHHHHH
Confidence 9987532 1111112211111111 1123467999999998 6888888888764
No 329
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.98 E-value=5.1e-09 Score=105.71 Aligned_cols=157 Identities=23% Similarity=0.324 Sum_probs=93.3
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhh----hhcCCccccccccCCChhhhhcCceEE---eee---eEEee----
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLS----KKFGGEAKSYDQIDAAPEEKARGITIN---TAH---IEYET---- 72 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~----~~~~~~~~~~~~~d~~~~e~~~g~t~~---~~~---~~~~~---- 72 (593)
.+....+.|+++|++++|||||+++++..+. .+.....+ ..|..++. ..|.|+. ..+ -..+.
T Consensus 12 ~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~R---a~DELpqs-~~GktItTTePkfvP~kAvEI~~~~ 87 (492)
T TIGR02836 12 ERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKER---AQDELPQS-AAGKTIMTTEPKFVPNEAVEININE 87 (492)
T ss_pred HHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhH---HHhccCcC-CCCCCcccCCCccccCcceEEeccC
Confidence 4567789999999999999999999997621 11100111 12222222 2363333 333 11221
Q ss_pred -CCeEEEEEecCCh--------hhhHH-----------------H----HHHhhh-cCCEEEEEE-ECC------CCCCh
Q psy8869 73 -KARHYAHVDCPGH--------ADYIK-----------------N----MITGAA-QMDGAILVC-SAA------DGPMP 114 (593)
Q Consensus 73 -~~~~~~iiDtpGh--------~~~~~-----------------~----~~~~~~-~~d~~ilVv-da~------~g~~~ 114 (593)
-...+.++||+|. .+--+ . +..-+. .+|.+|+|. |++ ++...
T Consensus 88 ~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~ 167 (492)
T TIGR02836 88 GTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVE 167 (492)
T ss_pred CCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchH
Confidence 2357889999992 11111 1 222344 789999999 875 34556
Q ss_pred hhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 115 QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 115 qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
...+.+..++..++|.++ ++||+|-...+ . ..+..++. ..+ ++|++++|...-
T Consensus 168 aEe~~i~eLk~~~kPfii-vlN~~dp~~~e-t-~~l~~~l~---eky-----~vpvl~v~c~~l 220 (492)
T TIGR02836 168 AEERVIEELKELNKPFII-LLNSTHPYHPE-T-EALRQELE---EKY-----DVPVLAMDVESM 220 (492)
T ss_pred HHHHHHHHHHhcCCCEEE-EEECcCCCCch-h-HHHHHHHH---HHh-----CCceEEEEHHHc
Confidence 667788999999999555 68999943321 1 11222222 222 478999998753
No 330
>KOG4252|consensus
Probab=98.97 E-value=4e-10 Score=99.06 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=96.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..++++|+|.-++||||++.+...+....+........++ ........++..+.+|||+|+++|-.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfl--------------erqi~v~~Edvr~mlWdtagqeEfDa 84 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFL--------------ERQIKVLIEDVRSMLWDTAGQEEFDA 84 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhh--------------hHHHHhhHHHHHHHHHHhccchhHHH
Confidence 4589999999999999999999866443332221111111 01111223344556899999999999
Q ss_pred HHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
.+-.++++|.+.+||.+.++ ..+..+.+.-..... ..||.++ +-||+|+++....-. .+++.+.+.+ .
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~-vqNKIDlveds~~~~---~evE~lak~l-----~ 155 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVF-VQNKIDLVEDSQMDK---GEVEGLAKKL-----H 155 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEE-eeccchhhHhhhcch---HHHHHHHHHh-----h
Confidence 99999999999999999987 345556555443333 3688665 579999997533222 2333333333 3
Q ss_pred ceEEEeccCccc
Q psy8869 168 IPIIKGSAKLAL 179 (593)
Q Consensus 168 ~~vi~~Sa~~g~ 179 (593)
..++.+|++...
T Consensus 156 ~RlyRtSvked~ 167 (246)
T KOG4252|consen 156 KRLYRTSVKEDF 167 (246)
T ss_pred hhhhhhhhhhhh
Confidence 458889998764
No 331
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.97 E-value=9.1e-09 Score=104.64 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=89.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCc---eEEeeeeEEeeCC-eEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI---TINTAHIEYETKA-RHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~---t~~~~~~~~~~~~-~~~~iiDtpGh 85 (593)
+..++|+|+|.+|+|||||+|+|.+...+..+ .+ ..|. |.... .+.... .++++||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~-aA-------------~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEG-AA-------------PTGVVETTMEPT--PYPHPKFPNVTLWDLPGI 96 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTT-S---------------SSSHSCCTS-E--EEE-SS-TTEEEEEE--G
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcC-cC-------------CCCCCcCCCCCe--eCCCCCCCCCeEEeCCCC
Confidence 35689999999999999999999754322211 11 1122 22222 222222 35899999993
Q ss_pred -------hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC------------CHHHH
Q psy8869 86 -------ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV------------DDEEL 146 (593)
Q Consensus 86 -------~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~------------~~~~~ 146 (593)
.+|+..+ .+..-|..|++.+.. ........+..+..+|.|..+ |-||+|.. +.++.
T Consensus 97 gt~~f~~~~Yl~~~--~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyf-VRTKvD~Dl~~~~~~~p~~f~~e~~ 171 (376)
T PF05049_consen 97 GTPNFPPEEYLKEV--KFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYF-VRTKVDSDLYNERRRKPRTFNEEKL 171 (376)
T ss_dssp GGSS--HHHHHHHT--TGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEE-EE--HHHHHHHHHCC-STT--HHTH
T ss_pred CCCCCCHHHHHHHc--cccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEE-EEecccccHhhhhccCCcccCHHHH
Confidence 4455544 456779876665432 223334445666778888655 57999951 12345
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 147 LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
.+.+...+.+-|+..+.. ..++|-+|+..-. .-.+..|.+.|...+|..
T Consensus 172 L~~IR~~c~~~L~k~gv~--~P~VFLVS~~dl~--------~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 172 LQEIRENCLENLQKAGVS--EPQVFLVSSFDLS--------KYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHHHHHHHHHHHCTT-S--S--EEEB-TTTTT--------STTHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHHHHHHcCCC--cCceEEEeCCCcc--------cCChHHHHHHHHHHhHHH
Confidence 566666777777766663 5679999997521 124777888887777644
No 332
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.94 E-value=1.1e-08 Score=98.17 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh-------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH------- 85 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh------- 85 (593)
++|+++|..|+||||++|.|++........ .....|..........+++.+++|||||.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc--------------ccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 589999999999999999998642211000 01123433444455778999999999992
Q ss_pred hhhHHHHHHh----hhcCCEEEEEEECCCCCChhhHHHHHHHHH-cC---CCeEEEEEeecCCCCHHHHHHHHH----HH
Q psy8869 86 ADYIKNMITG----AAQMDGAILVCSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKADMVDDEELLELVE----IE 153 (593)
Q Consensus 86 ~~~~~~~~~~----~~~~d~~ilVvda~~g~~~qt~e~l~~~~~-l~---ip~iiVvvNK~Dl~~~~~~~~~~~----~~ 153 (593)
++...++... ..+.+++|||+... ......+..+..+.. +| ..+++|+.|..|.......-+.++ ..
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~ 145 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEA 145 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchh
Confidence 2223333332 34689999999998 455555555544443 34 356788889999766432222222 34
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 154 ~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++..+- .+...+..+.. .|.....+.+|++.+...+
T Consensus 146 l~~li~~c~~-----R~~~f~n~~~~----~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 146 LQELIEKCGG-----RYHVFNNKTKD----KEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp HHHHHHHTTT-----CEEECCTTHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhcCC-----EEEEEeccccc----hhhhHHHHHHHHHHHHHHH
Confidence 6777776653 35555554110 0000134667777776543
No 333
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.93 E-value=1.1e-08 Score=97.90 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=92.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCcccccc---ccCCChhhhhcCceEE-eee---------------e
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD---QIDAAPEEKARGITIN-TAH---------------I 68 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~---~~d~~~~e~~~g~t~~-~~~---------------~ 68 (593)
.++...+|+++|+.|||||||+++|+............... ..|....+ ..|..+- ... .
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 34567899999999999999999998764321110000000 01211111 2222110 000 0
Q ss_pred EEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH-HHH
Q psy8869 69 EYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELL 147 (593)
Q Consensus 69 ~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~-~~~ 147 (593)
.....+..+.|++|.|..... .......+..+.|+|+.++...+.. .....+.+.++ ++||+|+.+.. ...
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~ii-v~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLI-VINKADLAEAVGFDV 168 (207)
T ss_pred HhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh----hHhHHhhCCEE-EEEHHHccccchhhH
Confidence 011124578899999931110 1111245677889999875433221 22234556554 67999998642 112
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 148 ELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+.+ .+.++..+ +..|++++||++| .+++++++++.++
T Consensus 169 ~~~----~~~l~~~~---~~~~i~~~Sa~~g----------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKM----KADAKKIN---PEAEIILMSLKTG----------EGLDEWLEFLEGQ 205 (207)
T ss_pred HHH----HHHHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHHh
Confidence 222 22233332 2578999999998 7899999998763
No 334
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.92 E-value=5e-09 Score=103.06 Aligned_cols=168 Identities=16% Similarity=0.126 Sum_probs=92.4
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhh--cCce---EEee-------------eeE
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA--RGIT---INTA-------------HIE 69 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~--~g~t---~~~~-------------~~~ 69 (593)
.++....|.++|.+|||||||+++|+..+....+..............++- .|.. +... ...
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 456788999999999999999999987653321110000000111122221 1211 1110 001
Q ss_pred EeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH-HHHH
Q psy8869 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLE 148 (593)
Q Consensus 70 ~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~-~~~~ 148 (593)
+......+.||++.|....-... --..+.-+.|+|..+|..... .+-..+....++ ++||+|++++. ...+
T Consensus 180 L~~~~~d~liIEnvGnLvcPa~f---dlge~~~v~vlsV~eg~dkpl----Kyp~~f~~ADIV-VLNKiDLl~~~~~dle 251 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVCPASF---DLGEKHKVAVLSVTEGEDKPL----KYPHMFAAASLM-LLNKVDLLPYLNFDVE 251 (290)
T ss_pred HhhcCCcEEEEECCCCccCCCcc---chhhceeEEEEECccccccch----hccchhhcCcEE-EEEhHHcCcccHHHHH
Confidence 23345578899998851111100 012355678888887743211 122233455565 57999998641 1222
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 149 LVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+. +.++.++ ...+++++||++| .++++|+++|..
T Consensus 252 ~~~----~~lr~ln---p~a~I~~vSA~tG----------eGld~L~~~L~~ 286 (290)
T PRK10463 252 KCI----ACAREVN---PEIEIILISATSG----------EGMDQWLNWLET 286 (290)
T ss_pred HHH----HHHHhhC---CCCcEEEEECCCC----------CCHHHHHHHHHH
Confidence 222 2233332 2578999999998 789999999875
No 335
>KOG0395|consensus
Probab=98.92 E-value=8.9e-09 Score=96.86 Aligned_cols=156 Identities=22% Similarity=0.209 Sum_probs=97.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCc-eEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGI-TINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~-t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
..++|+++|..|+|||+|+-++.+..... +....+ +........+.+...+.|+||+|+++|.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~----------------~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE----------------DYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc----------------ccCCCccccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 45799999999999999998877532111 111111 1112223333344556699999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCC-CCh---hhHHHHHHHHH-cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADG-PMP---QTREHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g-~~~---qt~e~l~~~~~-l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
...-..+..+|+.++|.+.++- .+. +.++++...+. ..+|. ++|.||+|+...... -.++-..+...
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Pi-vlVGNK~Dl~~~R~V---~~eeg~~la~~---- 137 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPI-ILVGNKCDLERERQV---SEEEGKALARS---- 137 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCE-EEEEEcccchhcccc---CHHHHHHHHHh----
Confidence 8888888999999999999883 232 33334322222 24674 556799999863111 11122333222
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+.++++.+||+.. .++++++..|...
T Consensus 138 -~~~~f~E~Sak~~----------~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 138 -WGCAFIETSAKLN----------YNVDEVFYELVRE 163 (196)
T ss_pred -cCCcEEEeeccCC----------cCHHHHHHHHHHH
Confidence 3678999999986 4566666666553
No 336
>KOG0077|consensus
Probab=98.92 E-value=8e-09 Score=90.18 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=84.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
|+.-+++++|-.|||||||+..|-...... + --|...+...+...+-.++-+|..||..-.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-------------h------vPTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-------------H------VPTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-------------c------CCCcCCChHHheecCceEEEEccccHHHHH
Confidence 456789999999999999999885321110 0 123333334455667778899999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHc----CCCeEEEEEeecCCCCH
Q psy8869 90 KNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQV----GVPYIVVFLNKADMVDD 143 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l----~ip~iiVvvNK~Dl~~~ 143 (593)
.-+...+..+|+++++|||.+ ..+...++++..+..+ .+|.+|. .||+|.+.+
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lil-gnKId~p~a 136 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLIL-GNKIDIPYA 136 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceee-cccccCCCc
Confidence 999999999999999999987 4556677777655543 6887765 799999865
No 337
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.89 E-value=1.5e-08 Score=95.89 Aligned_cols=165 Identities=17% Similarity=0.230 Sum_probs=89.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhh--hhcCc-----eEEe----e---ee--E-------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE--KARGI-----TINT----A---HI--E------- 69 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e--~~~g~-----t~~~----~---~~--~------- 69 (593)
++|+++|..|||||||+.+|++......+-.............+ ...+. .+.. . .. .
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 68999999999999999999876433211000000000001111 11110 0000 0 00 0
Q ss_pred ---E--eeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-
Q psy8869 70 ---Y--ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD- 143 (593)
Q Consensus 70 ---~--~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~- 143 (593)
. ..+...++++++.|-. ...... ...+|.+++|+|+.++...+.. .........++ ++||+|+.+.
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~-~~~k~d~~~~~ 153 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLL-VINKIDLAPMV 153 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEE-EEEhhhccccc
Confidence 0 1134578899999921 111000 1236889999999876543221 11122222244 5799999853
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
....+.+ .+.++.++ ...+++++||++| .|+++++++|.+..
T Consensus 154 ~~~~~~~----~~~~~~~~---~~~~i~~~Sa~~g----------~gi~el~~~i~~~~ 195 (199)
T TIGR00101 154 GADLGVM----ERDAKKMR---GEKPFIFTNLKTK----------EGLDTVIDWIEHYA 195 (199)
T ss_pred cccHHHH----HHHHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 1222223 33333332 2578999999998 78999999987653
No 338
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.87 E-value=2.1e-08 Score=78.76 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=61.7
Q ss_pred cEEEEEEEEeeeEecCCEEEEeecCCce---EEEEEEEEecceecceeeecceEEEEeccCCccC-CccceEEe
Q psy8869 227 GTVVTGRVERGIVRVGEELEIIGIKDTV---KTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRED-VERGQVLA 296 (593)
Q Consensus 227 G~v~~G~v~~G~l~~gd~v~i~p~~~~~---~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 296 (593)
|++++|+|.+|+|++||++++.|..... ..+|++|+.++....++.+|+.+++.+......+ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 7899999999999999999997733323 4999999999999999999999999988878888 89999996
No 339
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.86 E-value=8.2e-09 Score=95.26 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=46.9
Q ss_pred CeEEEEEecCChhh----hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 74 ARHYAHVDCPGHAD----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 74 ~~~~~iiDtpGh~~----~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
...+.|+||||-.. ....+...+..+|++++|+++++....+..+.+........+.+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 45689999999422 223445556799999999999997776666666666666666688888985
No 340
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.83 E-value=4.3e-08 Score=78.26 Aligned_cols=82 Identities=33% Similarity=0.543 Sum_probs=71.3
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccc
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERG 292 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G 292 (593)
+.+.|.+++..++.|.++.|+|.+|++++||.+.+.|.......+|++|+.++.+++++.||+.+++.+... .+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccCCC
Confidence 357899999999999999999999999999999998743446788999999999999999999999988643 378999
Q ss_pred eEEe
Q psy8869 293 QVLA 296 (593)
Q Consensus 293 ~vl~ 296 (593)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9886
No 341
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.81 E-value=1.3e-07 Score=93.77 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
....++|+++|.+|+||||++|+|++......+. . .+.+..........++..+.+|||||..+.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~----------f-----~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA----------F-----QSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccC----------C-----CCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 3467899999999999999999999643211100 0 011111112223457889999999995543
Q ss_pred --HH-HHHHhh------hcCCEEEEEEECCCC-CChhhHHHHHHHHH-cC---CCeEEEEEeecCCCC
Q psy8869 89 --IK-NMITGA------AQMDGAILVCSAADG-PMPQTREHILLARQ-VG---VPYIVVFLNKADMVD 142 (593)
Q Consensus 89 --~~-~~~~~~------~~~d~~ilVvda~~g-~~~qt~e~l~~~~~-l~---ip~iiVvvNK~Dl~~ 142 (593)
.. .....+ ..+|++++|.+.+.. .....+..+..+.. +| -.+.||++|+.|..+
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 11 111111 258999999654432 22233333433332 23 245777889999763
No 342
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.76 E-value=1.4e-07 Score=95.97 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=53.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-----------------e
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-----------------R 75 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~ 75 (593)
++|+++|.+|+|||||+++|++.....+.. .+.|++.....+...+ .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny----------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc----------------ccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 689999999999999999999753221111 1334333222111111 2
Q ss_pred EEEEEecCCh-----h--hhHHHHHHhhhcCCEEEEEEECCC
Q psy8869 76 HYAHVDCPGH-----A--DYIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 76 ~~~iiDtpGh-----~--~~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
.+.++|+||- . ......+..++.+|++++|||+..
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 5889999992 2 233455666789999999999953
No 343
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.72 E-value=9.3e-08 Score=92.39 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=48.8
Q ss_pred CeEEEEEecCChh--------hh----HHH-HHHhhh-cCCEEEEEEECCCCCChhh-HHHHHHHHHcCCCeEEEEEeec
Q psy8869 74 ARHYAHVDCPGHA--------DY----IKN-MITGAA-QMDGAILVCSAADGPMPQT-REHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 74 ~~~~~iiDtpGh~--------~~----~~~-~~~~~~-~~d~~ilVvda~~g~~~qt-~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
..+++++||||.. .. +.. +..++. ..+.+++|+||+.+...+. .+.+..+...+.+.++ |+||+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~-ViTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIG-VITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEE-EEECC
Confidence 3578999999953 11 222 334455 3469999999998887766 4666777777888554 57999
Q ss_pred CCCCH
Q psy8869 139 DMVDD 143 (593)
Q Consensus 139 Dl~~~ 143 (593)
|..+.
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 99865
No 344
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.72 E-value=2.9e-07 Score=71.70 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=61.2
Q ss_pred CCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCc
Q psy8869 211 GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290 (593)
Q Consensus 211 ~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~ 290 (593)
.|-++.|...+....+. ++.|+|..|+|++|..| .+ ..-..|+|||.+++++++|.+||.|++.+.|.. ++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G-~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DG-RKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CS-SCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CC-EEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCC
Confidence 36678888888888888 77779999999999998 22 246789999999999999999999999999854 899
Q ss_pred cceEE
Q psy8869 291 RGQVL 295 (593)
Q Consensus 291 ~G~vl 295 (593)
.||+|
T Consensus 75 eGDiL 79 (81)
T PF14578_consen 75 EGDIL 79 (81)
T ss_dssp TT-EE
T ss_pred CCCEE
Confidence 99987
No 345
>KOG2486|consensus
Probab=98.66 E-value=8.7e-08 Score=91.20 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=96.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC-----
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG----- 84 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG----- 84 (593)
.....+++.|..|.|||+|++.++........+. .+.|-|..+.++. -+..+.++|.||
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k-------------~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK-------------SKNGKTQAINHFH---VGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcC-------------CCCccceeeeeee---ccceEEEEecCCccccc
Confidence 3457999999999999999999986532211111 0335555444433 456799999999
Q ss_pred --------hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHH-----HHHHHH
Q psy8869 85 --------HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-----LLELVE 151 (593)
Q Consensus 85 --------h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~-----~~~~~~ 151 (593)
..+|.+.....-.+--.+.+++|+..++++.....+..+...++|..+ +.||||....-. ....++
T Consensus 198 y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~-vfTK~DK~k~~~~~~kKp~~~i~ 276 (320)
T KOG2486|consen 198 YGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTS-VFTKCDKQKKVKRTGKKPGLNIK 276 (320)
T ss_pred CCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEE-eeehhhhhhhccccccCccccce
Confidence 233333333333466678899999999999999999999999999666 469999764311 000111
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
..+..+.... + ....|++.+|+.++
T Consensus 277 ~~f~~l~~~~-f-~~~~Pw~~~Ssvt~ 301 (320)
T KOG2486|consen 277 INFQGLIRGV-F-LVDLPWIYVSSVTS 301 (320)
T ss_pred eehhhccccc-e-eccCCceeeecccc
Confidence 1112111111 1 13578899999987
No 346
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.62 E-value=5.8e-07 Score=89.48 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=78.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh--
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD-- 87 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~-- 87 (593)
.++|.++|..|+|||||++.|.......... ..+.......+..++.......+.++ ..++++||||..+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 5899999999999999999998642211110 00111112223334444434444333 3577999999321
Q ss_pred -----------hH--------HHHHHhh------hcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 88 -----------YI--------KNMITGA------AQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 88 -----------~~--------~~~~~~~------~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
|+ ..-.... ...|++|+.++++. |..+...+.|..+... ++ +|-+|.|.|..
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vN-vIPvIaKaD~l 155 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VN-VIPVIAKADTL 155 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SE-EEEEESTGGGS
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-cc-EEeEEeccccc
Confidence 11 1110000 14589999999874 6666666655544432 44 55568999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCC
Q psy8869 142 DDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
..++ .+.++..+.+-++..++
T Consensus 156 t~~e-l~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 156 TPEE-LQAFKQRIREDLEENNI 176 (281)
T ss_dssp -HHH-HHHHHHHHHHHHHHTT-
T ss_pred CHHH-HHHHHHHHHHHHHHcCc
Confidence 8644 45567778877777654
No 347
>KOG3883|consensus
Probab=98.62 E-value=5.9e-07 Score=77.39 Aligned_cols=167 Identities=19% Similarity=0.073 Sum_probs=100.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEE-eeeeEEeeC---CeEEEEEecCChh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITIN-TAHIEYETK---ARHYAHVDCPGHA 86 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~---~~~~~iiDtpGh~ 86 (593)
+..+|+++|.-++|||.++..|+......+... --|+. +-....+++ ...+.|.||.|-.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~----------------~pTiEDiY~~svet~rgarE~l~lyDTaGlq 71 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL----------------HPTIEDIYVASVETDRGAREQLRLYDTAGLQ 71 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcc----------------ccchhhheeEeeecCCChhheEEEeeccccc
Confidence 567999999999999999999986533222110 11111 122223332 2357799999988
Q ss_pred hhHHHHH-HhhhcCCEEEEEEECCCCCChhhHHHHHH-HHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 87 DYIKNMI-TGAAQMDGAILVCSAADGPMPQTREHILL-ARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 87 ~~~~~~~-~~~~~~d~~ilVvda~~g~~~qt~e~l~~-~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
.+..... .+++.+|+.+||.|..+...-|-.+.|.. +.. -.+| ++|.-||+|+.++.+..-.+. ..+++
T Consensus 72 ~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~d~A---~~Wa~- 146 (198)
T KOG3883|consen 72 GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDMDVA---QIWAK- 146 (198)
T ss_pred CchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCHHHH---HHHHh-
Confidence 8844443 44567899999999987443333333321 111 2467 444569999976522111111 11222
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGA 212 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~ 212 (593)
.+.+....+++... .++.+-+.+|...+..|...+.-|
T Consensus 147 ----rEkvkl~eVta~dR----------~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 147 ----REKVKLWEVTAMDR----------PSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred ----hhheeEEEEEeccc----------hhhhhHHHHHHHhccCCcccccCc
Confidence 24677899999875 577777888877776666544333
No 348
>KOG0410|consensus
Probab=98.59 E-value=2.5e-07 Score=89.71 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=94.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe-eCCeEEEEEecCChhhhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-TKARHYAHVDCPGHADYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~~~iiDtpGh~~~~ 89 (593)
+.-.|+++|-.|+|||||+++|+.....- ..+.+ -|.|.+...-. -+++.+.+.||-|.-.-+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p---~drLF-------------ATLDpT~h~a~Lpsg~~vlltDTvGFisdL 240 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYP---NDRLF-------------ATLDPTLHSAHLPSGNFVLLTDTVGFISDL 240 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCc---cchhh-------------eeccchhhhccCCCCcEEEEeechhhhhhC
Confidence 44579999999999999999999542211 11111 12222211111 246678899999954433
Q ss_pred H--------HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHcCCCe------EEEEEeecCCCCHHHHHHHHHHHH
Q psy8869 90 K--------NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQVGVPY------IVVFLNKADMVDDEELLELVEIEI 154 (593)
Q Consensus 90 ~--------~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l~ip~------iiVvvNK~Dl~~~~~~~~~~~~~~ 154 (593)
+ .++.-...+|.++-|+|.++..- .|....+..++.+++|. +|=|=||+|..+..-
T Consensus 241 P~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--------- 311 (410)
T KOG0410|consen 241 PIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--------- 311 (410)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC---------
Confidence 2 23334457899999999998644 55555778888888862 233347777554210
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+.--.+++|+++| .|+.++++++....
T Consensus 312 ---------e~E~n~~v~isaltg----------dgl~el~~a~~~kv 340 (410)
T KOG0410|consen 312 ---------EEEKNLDVGISALTG----------DGLEELLKAEETKV 340 (410)
T ss_pred ---------ccccCCccccccccC----------ccHHHHHHHHHHHh
Confidence 001122789999998 78999999887654
No 349
>KOG3886|consensus
Probab=98.55 E-value=2.9e-07 Score=85.10 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=92.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhhhHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHADYIK 90 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~~~~ 90 (593)
..+|.++|..|||||++=..+....... | -+.-|-||++.+....+-+ -.+.+||+.|++.|++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~-----------D----~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR-----------D----TRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh-----------h----hhccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 3579999999999999877765332111 0 1122667777665544433 4567999999999999
Q ss_pred HHHHh-----hhcCCEEEEEEECCCCCChhhHHHHHHHHHc------CCCeEEEEEeecCCCCH---HHHHHHHHHHHHH
Q psy8869 91 NMITG-----AAQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVDD---EELLELVEIEIRE 156 (593)
Q Consensus 91 ~~~~~-----~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l------~ip~iiVvvNK~Dl~~~---~~~~~~~~~~~~~ 156 (593)
+..+. .+..++.+.|.|+..........|.+.+... ..+.|+ .+.|||++.. +..++.....+..
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~-l~hKmDLv~~d~r~~if~~r~~~l~~ 147 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFC-LLHKMDLVQEDARELIFQRRKEDLRR 147 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEE-EEeechhcccchHHHHHHHHHHHHHH
Confidence 88773 4578999999999886665555555443321 233344 5799999865 2344444433333
Q ss_pred HHhhcCCCCCCceEEEeccCc
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKL 177 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~ 177 (593)
+-+.+ .+..+|+|-.+
T Consensus 148 ~s~~~-----~~~~f~TsiwD 163 (295)
T KOG3886|consen 148 LSRPL-----ECKCFPTSIWD 163 (295)
T ss_pred hcccc-----cccccccchhh
Confidence 33322 35677888765
No 350
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.53 E-value=2e-06 Score=92.19 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=68.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh---
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY--- 88 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~--- 88 (593)
.++|+++|.+|+||||++|.|++....... ....++| .........++..+.+|||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vs--------------s~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTD--------------AFGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccccc--------------CCCCCce-EEEEEEEEECCceEEEEECCCCCccccc
Confidence 468999999999999999999864211100 0011222 2333334557788999999995432
Q ss_pred ---HHHH----HHhhh--cCCEEEEEEECCCCCC-hhhHHHHHHHHH-cC---CCeEEEEEeecCCCC
Q psy8869 89 ---IKNM----ITGAA--QMDGAILVCSAADGPM-PQTREHILLARQ-VG---VPYIVVFLNKADMVD 142 (593)
Q Consensus 89 ---~~~~----~~~~~--~~d~~ilVvda~~g~~-~qt~e~l~~~~~-l~---ip~iiVvvNK~Dl~~ 142 (593)
...+ ...+. .+|++|+|........ ......+..+.. +| ..+.||+.|+.|..+
T Consensus 183 q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 183 QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1222 22222 5798888877643221 122223332222 22 466788899999875
No 351
>PTZ00258 GTP-binding protein; Provisional
Probab=98.50 E-value=4.4e-07 Score=93.57 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=56.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---------------
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--------------- 73 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------- 73 (593)
....++|+++|.+|+|||||+++|++.....+.. .+.|++.........
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~----------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF----------------PFCTIDPNTARVNVPDERFDWLCKHFKPKS 81 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCC----------------CCCcccceEEEEecccchhhHHHHHcCCcc
Confidence 3456799999999999999999998653322111 133443333222222
Q ss_pred --CeEEEEEecCChh-------hhHHHHHHhhhcCCEEEEEEECC
Q psy8869 74 --ARHYAHVDCPGHA-------DYIKNMITGAAQMDGAILVCSAA 109 (593)
Q Consensus 74 --~~~~~iiDtpGh~-------~~~~~~~~~~~~~d~~ilVvda~ 109 (593)
..++.|+||||-. ......+..++.+|++++|||+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2358899999931 23445566678999999999985
No 352
>KOG1673|consensus
Probab=98.48 E-value=1.5e-06 Score=75.01 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=99.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.-.++|+++|+...|||||+-...+...+.. .+...|+...-.......-...+.+||..|+++|.
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~--------------~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE--------------YTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHH--------------HHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 3458999999999999999987765432211 11222332222222333334457799999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHcC---CCeEEEEEeecCCCC--HHHHHHHHHHHHHHHHhhcCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQVG---VPYIVVFLNKADMVD--DEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l~---ip~iiVvvNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~ 163 (593)
....-+...+-+++++.|-+.... ...++....++.++ +| ++ +-+|-|+.- +.+..+.+..+-+.+.+..
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-il-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~m-- 159 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-IL-VGTKYDLFIDLPPELQETISRQARKYAKVM-- 159 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EE-eccchHhhhcCCHHHHHHHHHHHHHHHHHh--
Confidence 887777788899999999987433 34456667777664 66 33 469999641 1345556666667666654
Q ss_pred CCCCceEEEeccCccc
Q psy8869 164 PGNDIPIIKGSAKLAL 179 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~ 179 (593)
+.+.+++|+-+..
T Consensus 160 ---nAsL~F~Sts~sI 172 (205)
T KOG1673|consen 160 ---NASLFFCSTSHSI 172 (205)
T ss_pred ---CCcEEEeeccccc
Confidence 4689999998863
No 353
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.47 E-value=8.9e-06 Score=81.17 Aligned_cols=148 Identities=22% Similarity=0.330 Sum_probs=93.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhh-hhcCceEEeeeeEEeeCCe--EEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE-KARGITINTAHIEYETKAR--HYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e-~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh 85 (593)
..-.++|.++|..|.||||++|.|.+....... ..+....+ ...++.+......++.++. ++++|||||.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDET-------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCC-------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 345689999999999999999999976322211 01122222 3344555555555555544 5679999994
Q ss_pred hhh---------------------HHHHHHhhh-------cCCEEEEEEECC-CCCChhhHHHHHHHHHcCCCeEEEEEe
Q psy8869 86 ADY---------------------IKNMITGAA-------QMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLN 136 (593)
Q Consensus 86 ~~~---------------------~~~~~~~~~-------~~d~~ilVvda~-~g~~~qt~e~l~~~~~l~ip~iiVvvN 136 (593)
.++ +.+=....+ ..+++|+.+-++ +|+.+...+.+..+... +. +|=||-
T Consensus 93 GD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vN-lIPVI~ 170 (373)
T COG5019 93 GDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VN-LIPVIA 170 (373)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cC-eeeeee
Confidence 433 211111111 357899999876 47888888777555442 33 444679
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEE
Q psy8869 137 KADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 171 (593)
Q Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi 171 (593)
|.|....+++ ...+..+.+.+... +++++
T Consensus 171 KaD~lT~~El-~~~K~~I~~~i~~~-----nI~vf 199 (373)
T COG5019 171 KADTLTDDEL-AEFKERIREDLEQY-----NIPVF 199 (373)
T ss_pred ccccCCHHHH-HHHHHHHHHHHHHh-----CCcee
Confidence 9999987553 55666777777765 45666
No 354
>KOG0393|consensus
Probab=98.46 E-value=5.3e-07 Score=83.19 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=91.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCe--EEEEEecCChhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KAR--HYAHVDCPGHAD 87 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~--~~~iiDtpGh~~ 87 (593)
..++++++|.-.+|||.|+-..+... .+.+....+. +-....... +++ .+.+|||+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~----------------fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqed 65 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNA----------------FPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQED 65 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCc----------------CcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcc
Confidence 45899999999999999987765331 1111111110 111112222 233 456999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hh-hHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHH---------HHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQ-TREHILLARQV--GVPYIVVFLNKADMVDDEELLELVE---------IEI 154 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~q-t~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~---------~~~ 154 (593)
|-+-....+.++|.+|++.+..+... .. ....+-.+... ++|.++ |-+|.||-+.....+.+. .+-
T Consensus 66 YDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiL-VGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g 144 (198)
T KOG0393|consen 66 YDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIIL-VGTKADLRDDPSTLEKLQRQGLEPVTYEQG 144 (198)
T ss_pred cccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEE-EeehHHhhhCHHHHHHHHhccCCcccHHHH
Confidence 98766667789999999888765221 11 11122223322 688555 469999985432222222 233
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHH
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKA 197 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~ 197 (593)
.++.+.++. ...+.+||++. .++.+.++.
T Consensus 145 ~~lA~~iga----~~y~EcSa~tq----------~~v~~vF~~ 173 (198)
T KOG0393|consen 145 LELAKEIGA----VKYLECSALTQ----------KGVKEVFDE 173 (198)
T ss_pred HHHHHHhCc----ceeeeehhhhh----------CCcHHHHHH
Confidence 445555553 56999999996 456665554
No 355
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.46 E-value=3.9e-07 Score=89.91 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=52.4
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-----------------eEE
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-----------------RHY 77 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~~~ 77 (593)
|+++|.+|+|||||+++|++.....+.. .+.|++.........+ ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~----------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc----------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 5899999999999999999753321111 1334333322222221 248
Q ss_pred EEEecCCh-------hhhHHHHHHhhhcCCEEEEEEECCC
Q psy8869 78 AHVDCPGH-------ADYIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 78 ~iiDtpGh-------~~~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
.++|+||- +......+..++.+|+++.|||+..
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 89999992 2234455666789999999999863
No 356
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.44 E-value=1.7e-06 Score=69.75 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCC
Q psy8869 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTK 285 (593)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~ 285 (593)
+.||.+.|..+...+..|.+..+||.+|+|+.||.+.... ....++.+|... ..++++|.|||++++ .++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~---~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl- 74 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR---EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGL- 74 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC---CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECC-
Confidence 3688999999999999999999999999999999997643 233466676654 368899999999988 343
Q ss_pred ccCCccceEEe
Q psy8869 286 REDVERGQVLA 296 (593)
Q Consensus 286 ~~~i~~G~vl~ 296 (593)
.++..||+|+
T Consensus 75 -~~~~~Gdtl~ 84 (85)
T cd03690 75 -KGLRVGDVLG 84 (85)
T ss_pred -CCCcCccccC
Confidence 4677899885
No 357
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.37 E-value=5.3e-06 Score=67.13 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=62.1
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCC-ceEEEEEEEEec----ceecceeeecceEEEEeccCCcc
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKD-TVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKRE 287 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~-~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~ 287 (593)
|.+.|.++...+..|.++.+||.+|+|++||.|++...+. ....+|.+|... ..+++++.|||++++ .++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECC--C
Confidence 4678899988899999999999999999999998764321 233567776433 368999999999866 444 4
Q ss_pred CCccceEEe
Q psy8869 288 DVERGQVLA 296 (593)
Q Consensus 288 ~i~~G~vl~ 296 (593)
++..||+|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 677899885
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.36 E-value=7.4e-06 Score=83.07 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=71.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---------hhhhcCceEEeeee-------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---------EEKARGITINTAHI------------- 68 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~------------- 68 (593)
+.-.|+++|..|+||||++..|.......++.-.... .|... .....++.+-....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~--~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA--GDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe--cCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 4568999999999999999999877654432211111 22211 12233443321100
Q ss_pred EEeeCCeEEEEEecCChhhh-------HHHHHHhh-----hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe
Q psy8869 69 EYETKARHYAHVDCPGHADY-------IKNMITGA-----AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136 (593)
Q Consensus 69 ~~~~~~~~~~iiDtpGh~~~-------~~~~~~~~-----~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN 136 (593)
.....++.+.||||||.... +..+...+ ..++..+||+||+.|..... +........++..+ ++|
T Consensus 191 ~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~gi--IlT 267 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLTGI--ILT 267 (318)
T ss_pred HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCCEE--EEE
Confidence 00235678999999995432 22222211 25788999999997543222 22222334455544 369
Q ss_pred ecCCCC
Q psy8869 137 KADMVD 142 (593)
Q Consensus 137 K~Dl~~ 142 (593)
|+|...
T Consensus 268 KlD~t~ 273 (318)
T PRK10416 268 KLDGTA 273 (318)
T ss_pred CCCCCC
Confidence 999664
No 359
>KOG1490|consensus
Probab=98.34 E-value=9.2e-07 Score=90.58 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=80.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh--
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-- 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~-- 88 (593)
+...+.++|-+|+||||+++.++.+..+.....+ +|-.+-...+.+.-..+..+||||-.+-
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaF----------------TTksL~vGH~dykYlrwQViDTPGILD~pl 230 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAF----------------TTKLLLVGHLDYKYLRWQVIDTPGILDRPE 230 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCccc----------------ccchhhhhhhhhheeeeeecCCccccCcch
Confidence 4568999999999999999998865333221111 1112222334455567889999993221
Q ss_pred ----HHHHH--Hhhh-cCCEEEEEEECCCCCChhhHHHHHHHHH----c-CCCeEEEEEeecCCCCHHHHHHHHHHHHHH
Q psy8869 89 ----IKNMI--TGAA-QMDGAILVCSAADGPMPQTREHILLARQ----V-GVPYIVVFLNKADMVDDEELLELVEIEIRE 156 (593)
Q Consensus 89 ----~~~~~--~~~~-~~d~~ilVvda~~g~~~qt~e~l~~~~~----l-~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~ 156 (593)
.-+|. .++. ---+++++.|-++-..-...+++.+-.. + +.| .|+|+||+|....++..+.-.+-+..
T Consensus 231 EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~D~m~~edL~~~~~~ll~~ 309 (620)
T KOG1490|consen 231 EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKIDAMRPEDLDQKNQELLQT 309 (620)
T ss_pred hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecccccCccccCHHHHHHHHH
Confidence 22222 2222 2256888999876221111222222221 2 445 55678999987664332222222222
Q ss_pred HHhhcCCCCCCceEEEeccCcc
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
+.+. .+++++.+|..+-
T Consensus 310 ~~~~-----~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 310 IIDD-----GNVKVVQTSCVQE 326 (620)
T ss_pred HHhc-----cCceEEEecccch
Confidence 2221 2588999999885
No 360
>KOG1534|consensus
Probab=98.33 E-value=3.9e-06 Score=76.71 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=76.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee------------------------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI------------------------ 68 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~------------------------ 68 (593)
+-+.++|+.||||||.++.+.......|+.-.. -.+|...+-...-.|+++.-.
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~v--VNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHV--VNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEE--eecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 557899999999999999998766554432111 123433333333334333110
Q ss_pred ---EE-----eeC--CeEEEEEecCC------hhhhHHHHHHhhhcC---CEEEEEEECCCCC-----ChhhHHHHHHHH
Q psy8869 69 ---EY-----ETK--ARHYAHVDCPG------HADYIKNMITGAAQM---DGAILVCSAADGP-----MPQTREHILLAR 124 (593)
Q Consensus 69 ---~~-----~~~--~~~~~iiDtpG------h~~~~~~~~~~~~~~---d~~ilVvda~~g~-----~~qt~e~l~~~~ 124 (593)
++ +.+ ...+.++|+|| |..-+++.+..+.+- -++++++|+.--. ..-....+..+-
T Consensus 82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH
Confidence 00 111 34688999999 455567777766653 3577788774211 112223344555
Q ss_pred HcCCCeEEEEEeecCCCCH
Q psy8869 125 QVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 125 ~l~ip~iiVvvNK~Dl~~~ 143 (593)
++.+|++=| ++|||+...
T Consensus 162 ~lE~P~INv-lsKMDLlk~ 179 (273)
T KOG1534|consen 162 SLEVPHINV-LSKMDLLKD 179 (273)
T ss_pred HhcCcchhh-hhHHHHhhh
Confidence 679998875 799999864
No 361
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.32 E-value=5.1e-06 Score=66.68 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=61.1
Q ss_pred eEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCC
Q psy8869 214 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDV 289 (593)
Q Consensus 214 ~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i 289 (593)
...|.++...+..|.+..+||.+|+|++||.+++.... .+.++..|... ..++++|.|||++++ .++ .++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~ 75 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG--KKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQT 75 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCC--CEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCc
Confidence 45678888888899999999999999999999876432 34556666543 468999999999997 454 458
Q ss_pred ccceEEec
Q psy8869 290 ERGQVLAK 297 (593)
Q Consensus 290 ~~G~vl~~ 297 (593)
+.||+|+.
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04092 76 RTGDTLVT 83 (83)
T ss_pred ccCCEEeC
Confidence 89999873
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=98.32 E-value=7.4e-06 Score=83.31 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=71.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hh------hhcCceEEeeee------------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTAHI------------ 68 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~------------ 68 (593)
++...|+++|.+|+||||++..|.......+..-... ..|... .| ..-|+.+.....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li--~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA--AGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe--cCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 3457899999999999999999987665443211111 122111 01 111222211100
Q ss_pred -EEeeCCeEEEEEecCChhhh----HHHHHHh--hhcCCEEEEEEECCCCCChhhHHHHH-HHHHcCCCeEEEEEeecCC
Q psy8869 69 -EYETKARHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 69 -~~~~~~~~~~iiDtpGh~~~----~~~~~~~--~~~~d~~ilVvda~~g~~~qt~e~l~-~~~~l~ip~iiVvvNK~Dl 140 (593)
.....++.+.||||||.... +..+..- ...+|..+||+||..|. ...+.+. +....++..+| +||+|.
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giI--lTKlD~ 291 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVI--LTKVDA 291 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEE--EeeecC
Confidence 00123567999999996433 2222111 23689999999998753 2233332 23356777554 699998
Q ss_pred CCH
Q psy8869 141 VDD 143 (593)
Q Consensus 141 ~~~ 143 (593)
...
T Consensus 292 ~~~ 294 (336)
T PRK14974 292 DAK 294 (336)
T ss_pred CCC
Confidence 653
No 363
>KOG1707|consensus
Probab=98.30 E-value=5.5e-06 Score=86.71 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=76.3
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
...++.++|+++|.-|+|||||+-.|++...-.. +-.++ .-++|- ..+.-+....+++|++..+
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~--------VP~rl-----~~i~IP---advtPe~vpt~ivD~ss~~ 67 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA--------VPRRL-----PRILIP---ADVTPENVPTSIVDTSSDS 67 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhcccc--------ccccC-----CccccC---CccCcCcCceEEEeccccc
Confidence 3456789999999999999999999986421100 00000 011221 1122233347899998776
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCC--CChhhHHHHHHHHHc-----CCCeEEEEEeecCCCCH
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADG--PMPQTREHILLARQV-----GVPYIVVFLNKADMVDD 143 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g--~~~qt~e~l~~~~~l-----~ip~iiVvvNK~Dl~~~ 143 (593)
+-.......++.||++.+|.+.++. ....+..+|=+.+++ .+| +|+|-||+|..+.
T Consensus 68 ~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~~ 130 (625)
T KOG1707|consen 68 DDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGDN 130 (625)
T ss_pred chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCccc
Confidence 6666667778999999999988772 222233334445554 477 5667899998754
No 364
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.30 E-value=8.3e-06 Score=65.92 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=61.7
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec---ceecceeeecceEEEEeccC-CccC
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGT-KRED 288 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~---~~~~~~a~aG~~v~l~l~~~-~~~~ 288 (593)
|.+.|+++...+..|.++.+||.+|+|+.||.++....+ .+.++..|... ..++++|.|||++++. .++ +..+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~--~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~ 77 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTG--KEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKD 77 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCC--CeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCc
Confidence 457788888889999999999999999999999876432 23455555533 3588999999999884 122 2246
Q ss_pred CccceEEec
Q psy8869 289 VERGQVLAK 297 (593)
Q Consensus 289 i~~G~vl~~ 297 (593)
+..||+|++
T Consensus 78 ~~~Gdtl~~ 86 (86)
T cd03699 78 ARVGDTITL 86 (86)
T ss_pred cccccEeeC
Confidence 889999873
No 365
>KOG3905|consensus
Probab=98.29 E-value=8.6e-06 Score=79.10 Aligned_cols=160 Identities=23% Similarity=0.266 Sum_probs=97.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEe-cCChhhhHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVD-CPGHADYIKN 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiD-tpGh~~~~~~ 91 (593)
-+|.++|..++|||||+.+|-+... --.+....|.+++-+.+.+.--.- ..+-++| -++|...++.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~-~KkgsgLeY~yl~V~de~RDd~tr------------~~VWiLDGd~~h~~LLk~ 119 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSET-VKKGSGLEYLYLHVHDEDRDDLTR------------CNVWILDGDLYHKGLLKF 119 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccc-cCCCCCcceEEEecccccchhhhh------------cceEEecCchhhhhHHhh
Confidence 4899999999999999999976531 112333344444444433332110 0112222 2457766766
Q ss_pred HHHhhhcCCE-EEEEEECCCCCC---------hhhHHHHH----------------------------------------
Q psy8869 92 MITGAAQMDG-AILVCSAADGPM---------PQTREHIL---------------------------------------- 121 (593)
Q Consensus 92 ~~~~~~~~d~-~ilVvda~~g~~---------~qt~e~l~---------------------------------------- 121 (593)
.+.+.+.++. +||++|-+..+. .-.+||+.
T Consensus 120 al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~ 199 (473)
T KOG3905|consen 120 ALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTV 199 (473)
T ss_pred cccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccc
Confidence 6666555554 555666554321 00111111
Q ss_pred -----------------HHHHcCCCeEEEEEeecCCCCH--------HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q psy8869 122 -----------------LARQVGVPYIVVFLNKADMVDD--------EELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176 (593)
Q Consensus 122 -----------------~~~~l~ip~iiVvvNK~Dl~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~ 176 (593)
+...+|+|.++ |+||||.++- ++.++.+...++.||-.+| ...|.+|++
T Consensus 200 ~~~~~de~~llPL~~dtLt~NlGi~vlV-V~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-----aaLiyTSvK 273 (473)
T KOG3905|consen 200 VGSSADEHVLLPLGQDTLTHNLGIPVLV-VCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-----AALIYTSVK 273 (473)
T ss_pred ccCccccccccccCCcchhhcCCCcEEE-EEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-----ceeEEeecc
Confidence 23345889555 5799998531 4567778889999998876 469999998
Q ss_pred ccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 177 LALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 177 ~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.. .+++-|..+|...
T Consensus 274 E~----------KNidllyKYivhr 288 (473)
T KOG3905|consen 274 ET----------KNIDLLYKYIVHR 288 (473)
T ss_pred cc----------cchHHHHHHHHHH
Confidence 75 6788888888653
No 366
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.29 E-value=6.2e-06 Score=66.22 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=60.9
Q ss_pred eEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCC
Q psy8869 214 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDV 289 (593)
Q Consensus 214 ~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i 289 (593)
...|+++...+..|.++.+||.+|+|++||.+.+... ....++..|... ..++++|.|||++++ .++ ..+
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~--~~~ 75 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTK--GKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGL--KDT 75 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCC--CcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECC--CCC
Confidence 3567777777888999999999999999999987643 234566666543 468899999999998 454 358
Q ss_pred ccceEEec
Q psy8869 290 ERGQVLAK 297 (593)
Q Consensus 290 ~~G~vl~~ 297 (593)
+.||+|++
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04088 76 ATGDTLCD 83 (83)
T ss_pred ccCCEeeC
Confidence 89999863
No 367
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.28 E-value=5.3e-06 Score=86.54 Aligned_cols=127 Identities=19% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---h------hhhcCceEEeeeeE-----------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---E------EKARGITINTAHIE----------- 69 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~------e~~~g~t~~~~~~~----------- 69 (593)
++...|+++|..|+||||++..|.......+...... ..|... . ....++.+......
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV--~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l 175 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV--CADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGV 175 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHH
Confidence 3457899999999999999999987665443221111 123221 0 11122222211000
Q ss_pred --EeeCCeEEEEEecCChhhh----HHHHHHh--hhcCCEEEEEEECCCCCChhhHHHHHHH-HHcCCCeEEEEEeecCC
Q psy8869 70 --YETKARHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNKADM 140 (593)
Q Consensus 70 --~~~~~~~~~iiDtpGh~~~----~~~~~~~--~~~~d~~ilVvda~~g~~~qt~e~l~~~-~~l~ip~iiVvvNK~Dl 140 (593)
+...++++.|+||||.... +..+... ...+|-++||+||..|-.. ...+... ...++..+ ++||+|.
T Consensus 176 ~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~--IlTKlD~ 251 (429)
T TIGR01425 176 EKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSV--IITKLDG 251 (429)
T ss_pred HHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEE--EEECccC
Confidence 0113678999999995433 3333322 2357899999999876332 2222222 23455533 4699997
Q ss_pred CC
Q psy8869 141 VD 142 (593)
Q Consensus 141 ~~ 142 (593)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 64
No 368
>KOG1547|consensus
Probab=98.28 E-value=3.9e-05 Score=71.57 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=87.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhc-CceEEeeeeEEeeCC--eEEEEEecCC--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKAR-GITINTAHIEYETKA--RHYAHVDCPG-- 84 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~-g~t~~~~~~~~~~~~--~~~~iiDtpG-- 84 (593)
.-.+||-++|..|.|||||++.|......+..+ +....|... .+.+....-.++.++ -++++|||||
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~--------~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSS--------SDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccC--------CCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 346899999999999999999998664333211 111111111 122222222233333 3567999999
Q ss_pred -------------------hhhhHHHHHHhhh-------cCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEee
Q psy8869 85 -------------------HADYIKNMITGAA-------QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNK 137 (593)
Q Consensus 85 -------------------h~~~~~~~~~~~~-------~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK 137 (593)
|++|++.-+...+ ..+++++.|.++- ...+...|.+..+.. +-.+|=||-|
T Consensus 116 DqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~--vvNvvPVIak 193 (336)
T KOG1547|consen 116 DQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE--VVNVVPVIAK 193 (336)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh--hheeeeeEee
Confidence 4555554443332 3578888898874 455667777654443 2234446799
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q psy8869 138 ADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176 (593)
Q Consensus 138 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~ 176 (593)
.|...-+++ ...++.+++-+...+ +.+.|-...
T Consensus 194 aDtlTleEr-~~FkqrI~~el~~~~-----i~vYPq~~f 226 (336)
T KOG1547|consen 194 ADTLTLEER-SAFKQRIRKELEKHG-----IDVYPQDSF 226 (336)
T ss_pred cccccHHHH-HHHHHHHHHHHHhcC-----ccccccccc
Confidence 998765443 234455665555544 346665443
No 369
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.27 E-value=6.9e-06 Score=74.70 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=60.8
Q ss_pred hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q psy8869 96 AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa 175 (593)
...+|.+++|+|++++...+..+....+...+.|.+ +++||+|+.+.+.. +. ...+... ...+++++||
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~i-iv~NK~Dl~~~~~~-~~----~~~~~~~-----~~~~~~~iSa 78 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLELGKKLL-IVLNKADLVPKEVL-EK----WKSIKES-----EGIPVVYVSA 78 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEE-EEEEhHHhCCHHHH-HH----HHHHHHh-----CCCcEEEEEc
Confidence 446999999999988766666555555566688855 46899999764321 11 1122222 1357999999
Q ss_pred CccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 176 KLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 176 ~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+++ .++++|++.|...+|
T Consensus 79 ~~~----------~gi~~L~~~l~~~~~ 96 (156)
T cd01859 79 KER----------LGTKILRRTIKELAK 96 (156)
T ss_pred ccc----------ccHHHHHHHHHHHHh
Confidence 998 689999999988765
No 370
>KOG0448|consensus
Probab=98.26 E-value=9.7e-06 Score=86.35 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=60.9
Q ss_pred EEEEEecCC---hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHHH
Q psy8869 76 HYAHVDCPG---HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVE 151 (593)
Q Consensus 76 ~~~iiDtpG---h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~~ 151 (593)
.+.++|.|| ...+......-.-.+|+.|||+.|.... .++..|+......+.|++.++.||.|.... ++..+.+.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHH
Confidence 578999999 3444444444456899999999997644 344445544444457887777899998654 34444555
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCc
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKL 177 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~ 177 (593)
.++.++ +-..+....-.++++||+.
T Consensus 286 ~Qi~eL-~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 286 KQIHEL-SVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHhc-CcccHhhhcCeeEEEeccc
Confidence 454421 1111111233588899653
No 371
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.6e-05 Score=79.96 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=53.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee--E----Ee----eCCeEEEEEe
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI--E----YE----TKARHYAHVD 81 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~----~~----~~~~~~~iiD 81 (593)
.++++|+|-+|+|||||+++||......++..+. .-|...|+..-.... . .. .-...+.|+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~--------TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vD 73 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFC--------TIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVD 73 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcc--------cccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEE
Confidence 3789999999999999999999764333332221 111111221100000 0 00 0012356999
Q ss_pred cCCh-------hhhHHHHHHhhhcCCEEEEEEECCC
Q psy8869 82 CPGH-------ADYIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 82 tpGh-------~~~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
.+|- +-.-+..+.-++.+|+++.|||+..
T Consensus 74 IAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 74 IAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 9992 2223445556789999999999863
No 372
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.22 E-value=5.8e-06 Score=77.90 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=73.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---h------hhhcCceEEeee-------------eEE
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---E------EKARGITINTAH-------------IEY 70 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~------e~~~g~t~~~~~-------------~~~ 70 (593)
..|+++|+.|+||||.+.+|.......+..-... .+|... . -+.-|+...... ..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li--s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI--SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee--cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 4689999999999999999987665542221111 123221 0 111122221110 001
Q ss_pred eeCCeEEEEEecCChhhhHH----HHHH--hhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 71 ETKARHYAHVDCPGHADYIK----NMIT--GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~~~~----~~~~--~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
..++.++.||||||...+.. .+.. .....+-++||+||+.+.. ...+........++..+| +||+|....
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~~lI--lTKlDet~~ 155 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGIDGLI--LTKLDETAR 155 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTCEEE--EESTTSSST
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCceEE--EEeecCCCC
Confidence 22456799999999544432 2221 1226789999999987543 233445556667888765 599998754
No 373
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.22 E-value=1.3e-05 Score=64.42 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=56.9
Q ss_pred EEEEEE---eCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCC
Q psy8869 217 VEDVFS---ISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDV 289 (593)
Q Consensus 217 i~~~~~---~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i 289 (593)
|+++.. .+..|.+.++||.+|+|+.||.|+....+ ...++..|... +.++++|.|||++++. + ..++
T Consensus 3 vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~--~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--g--l~~~ 76 (85)
T cd03689 3 VFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLG--KEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--N--PGNF 76 (85)
T ss_pred EEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCC--CEEEeeEeEEEecCCeeEcCEECCCCEEEEE--C--CCCc
Confidence 445555 77889999999999999999999875422 34556666543 3688999999999984 3 3467
Q ss_pred ccceEEec
Q psy8869 290 ERGQVLAK 297 (593)
Q Consensus 290 ~~G~vl~~ 297 (593)
+.||+|++
T Consensus 77 ~~Gdtl~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred cccCEeeC
Confidence 89999974
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.20 E-value=1.4e-05 Score=79.42 Aligned_cols=128 Identities=22% Similarity=0.222 Sum_probs=72.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hh------hhcCceEEee-------ee-----
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTA-------HI----- 68 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~-------~~----- 68 (593)
++...|+++|.+|+||||++..|.......+..-... ..|... .| ...|+.+-.. ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li--~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA--AGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE--eCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4456889999999999999999987665443211111 123211 11 2223322110 00
Q ss_pred -EEeeCCeEEEEEecCChhhhHHHHHH-------hhh-----cCCEEEEEEECCCCCChhhHHHH-HHHHHcCCCeEEEE
Q psy8869 69 -EYETKARHYAHVDCPGHADYIKNMIT-------GAA-----QMDGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVF 134 (593)
Q Consensus 69 -~~~~~~~~~~iiDtpGh~~~~~~~~~-------~~~-----~~d~~ilVvda~~g~~~qt~e~l-~~~~~l~ip~iiVv 134 (593)
.....++.+.|+||||....-...+. ... .+|..+||+|++.+. .+.... .+....++..+|
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~I-- 223 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGII-- 223 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEE--
Confidence 00125678999999996544333221 111 389999999998643 222222 333345666444
Q ss_pred EeecCCCCH
Q psy8869 135 LNKADMVDD 143 (593)
Q Consensus 135 vNK~Dl~~~ 143 (593)
+||+|....
T Consensus 224 lTKlDe~~~ 232 (272)
T TIGR00064 224 LTKLDGTAK 232 (272)
T ss_pred EEccCCCCC
Confidence 699998653
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=9.7e-06 Score=83.30 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=71.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCC---hhhhh------cCceEEeeee-------EEeeCCe
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA---PEEKA------RGITINTAHI-------EYETKAR 75 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~---~~e~~------~g~t~~~~~~-------~~~~~~~ 75 (593)
.-.++++|++|+||||++.+|........+.........|.. ..|.- .|+....... .-...++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 458899999999999999999876533211111111112222 11211 1333322111 0123567
Q ss_pred EEEEEecCChh---hhHHHHHHhhh---cCCEEEEEEECCCCCChhhHHHHHHHHHc--------CCCeEEEEEeecCCC
Q psy8869 76 HYAHVDCPGHA---DYIKNMITGAA---QMDGAILVCSAADGPMPQTREHILLARQV--------GVPYIVVFLNKADMV 141 (593)
Q Consensus 76 ~~~iiDtpGh~---~~~~~~~~~~~---~~d~~ilVvda~~g~~~qt~e~l~~~~~l--------~ip~iiVvvNK~Dl~ 141 (593)
.+.||||||.. +.....+..+. .++-.+||+||+.+....+.-...+.... ++..+| +||+|..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I--~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCI--LTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEE--EeccccC
Confidence 89999999955 33333333333 34567999999986654332222233322 244444 5999976
Q ss_pred CH
Q psy8869 142 DD 143 (593)
Q Consensus 142 ~~ 143 (593)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 53
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.18 E-value=2.1e-05 Score=72.92 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=68.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh---h------hhcCceEEeeeeE-------------Ee
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAHIE-------------YE 71 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~~-------------~~ 71 (593)
.+++.|.+|+||||+...|.......+..-.. ...|.... + ...|..+...... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~--i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLL--VAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE--EEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999888765544321111 11222211 1 0112222111000 01
Q ss_pred eCCeEEEEEecCChhhh----HHHHHHhh--hcCCEEEEEEECCCCCChhhHHHH-HHHHHcCCCeEEEEEeecCCCCH
Q psy8869 72 TKARHYAHVDCPGHADY----IKNMITGA--AQMDGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~----~~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l-~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
..++.+.++|+||...+ ...+.... ...|.+++|+|+..+. ...+.+ .+....++..+ ++||+|....
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~~~~v--iltk~D~~~~ 154 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALGITGV--ILTKLDGDAR 154 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCCCCEE--EEECCcCCCC
Confidence 23567899999997533 33322211 2489999999996543 223333 33445565433 4699998754
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=1.4e-05 Score=81.46 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=72.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hhh------hcCceEEeeee---------EEe-e
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EEK------ARGITINTAHI---------EYE-T 72 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e~------~~g~t~~~~~~---------~~~-~ 72 (593)
...|+++|..|+||||++..|.......+..-.. ...|... .|+ .-|+.+....- .+. .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVgl--I~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF--ITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEE--EecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 4689999999999999999998765433321111 1123221 111 11222211100 001 1
Q ss_pred CCeEEEEEecCChhh----hHHHHHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 73 KARHYAHVDCPGHAD----YIKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~----~~~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
.+..+.||||||... .+..+...+ ..+|..+||+||+.+.. ...+.+......++..+| +||+|....
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~idglI--~TKLDET~k 392 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDGIV--FTKFDETAS 392 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCCCEEE--EEcccCCCC
Confidence 146899999999533 333333332 25688999999975332 224444444557888766 599997753
No 378
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.14 E-value=2e-05 Score=62.94 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=56.5
Q ss_pred EEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCc
Q psy8869 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVE 290 (593)
Q Consensus 215 ~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~ 290 (593)
..|+++...+. |.+..++|.+|+|++||.|+....+ .+.+|..|... ..+++++.|||++++ .++ . ++
T Consensus 3 a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i--~g~--~-~~ 74 (81)
T cd04091 3 GLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTG--KKVRVPRLVRMHSNEMEEVEEAGAGDICAI--FGI--D-CA 74 (81)
T ss_pred EEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCC--CEEEEeEEEEEeCCCceEccEECCCCEEEE--ECC--C-cc
Confidence 45666665555 9999999999999999999886533 34566666543 468899999999985 444 3 88
Q ss_pred cceEEe
Q psy8869 291 RGQVLA 296 (593)
Q Consensus 291 ~G~vl~ 296 (593)
.||+|+
T Consensus 75 ~Gdtl~ 80 (81)
T cd04091 75 SGDTFT 80 (81)
T ss_pred cCCEec
Confidence 999986
No 379
>KOG1533|consensus
Probab=98.14 E-value=1.3e-05 Score=74.68 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=72.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeee-------------------------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH------------------------- 67 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~------------------------- 67 (593)
+-.+++|++||||||.++-+++.....++..... .+|...+-......+++..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV--NLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV--NLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEE--ecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 3468999999999999999888776666532221 1222211111111111100
Q ss_pred ---------eEEeeCCeEEEEEecCChh------hhHHHHHHhhhcCCEEEEEEECCCCC---C-----hhhHHHHHHHH
Q psy8869 68 ---------IEYETKARHYAHVDCPGHA------DYIKNMITGAAQMDGAILVCSAADGP---M-----PQTREHILLAR 124 (593)
Q Consensus 68 ---------~~~~~~~~~~~iiDtpGh~------~~~~~~~~~~~~~d~~ilVvda~~g~---~-----~qt~e~l~~~~ 124 (593)
..++....++.++|+||+- +-....++.+...|+-+.+|.-.+.. . ....-.+.-+.
T Consensus 81 l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl 160 (290)
T KOG1533|consen 81 LEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML 160 (290)
T ss_pred HHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH
Confidence 0123346789999999953 44666777777777766665433311 1 11222333445
Q ss_pred HcCCCeEEEEEeecCCCC
Q psy8869 125 QVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 125 ~l~ip~iiVvvNK~Dl~~ 142 (593)
.+..||+=| +.|+|+..
T Consensus 161 ~melphVNv-lSK~Dl~~ 177 (290)
T KOG1533|consen 161 HMELPHVNV-LSKADLLK 177 (290)
T ss_pred hhcccchhh-hhHhHHHH
Confidence 568898875 79999864
No 380
>KOG2655|consensus
Probab=98.12 E-value=5.2e-05 Score=76.45 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=87.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~~~ 88 (593)
-.+++-++|..|.|||||+|.|......... .....+.......++.......+-++. +++++||||..++
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 4589999999999999999999865221110 012222333334455555555554444 4678999994333
Q ss_pred H-------------HHHHH------------hhh--cCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecCC
Q psy8869 89 I-------------KNMIT------------GAA--QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 89 ~-------------~~~~~------------~~~--~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl 140 (593)
+ ..... ... ..+++|+.|..+. |..+...+.+..+.. .++ +|=+|-|.|.
T Consensus 93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vN-iIPVI~KaD~ 170 (366)
T KOG2655|consen 93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVN-LIPVIAKADT 170 (366)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-ccc-ccceeecccc
Confidence 1 11110 111 4588999999864 788888877654443 344 3345799999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcC
Q psy8869 141 VDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
...++. ..++..+.+.+...+
T Consensus 171 lT~~El-~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 171 LTKDEL-NQFKKRIRQDIEEHN 191 (366)
T ss_pred CCHHHH-HHHHHHHHHHHHHcC
Confidence 987554 445556666666544
No 381
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.12 E-value=4e-06 Score=76.37 Aligned_cols=56 Identities=27% Similarity=0.370 Sum_probs=38.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
..++|+++|.+|+|||||+|+|.+..... .....|.|.....+.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~---------------~~~~~g~T~~~~~~~~---~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK---------------VAPIPGETKVWQYITL---MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee---------------eCCCCCeeEeEEEEEc---CCCEEEEECcC
Confidence 46889999999999999999998532111 1123456655443332 24588999999
No 382
>KOG1486|consensus
Probab=98.11 E-value=7e-06 Score=76.96 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=63.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~- 88 (593)
....+|+++|-+.+|||||+..++....+.....+ .|...-...+++++..+.++|.||-..=
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCccccccc
Confidence 35679999999999999999999865443332221 3444445567788999999999993221
Q ss_pred ------HHHHHHhhhcCCEEEEEEECCCCC
Q psy8869 89 ------IKNMITGAAQMDGAILVCSAADGP 112 (593)
Q Consensus 89 ------~~~~~~~~~~~d~~ilVvda~~g~ 112 (593)
-+..++.++.||.+++|+||+...
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 233455567899999999998744
No 383
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.11 E-value=1.6e-05 Score=73.54 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=66.5
Q ss_pred cCCh-hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 82 CPGH-ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 82 tpGh-~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
-||| .+.+.++...+..+|.+++|+|++++......+.+..+ .+.|.+ +++||+|+.+.+.. . ...+.++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~i-lVlNK~Dl~~~~~~-~----~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRI-IVLNKADLADPKKT-K----KWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEE-EEEehhhcCChHHH-H----HHHHHHHh
Confidence 4786 56677788888999999999999876654444433322 356755 56899999865221 1 11122222
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. ..+++++||+++ .++++|.+.+...++
T Consensus 74 ~-----~~~vi~iSa~~~----------~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 K-----GEKVLFVNAKSG----------KGVKKLLKAAKKLLK 101 (171)
T ss_pred c-----CCeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 1 246899999997 688999998887654
No 384
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=98.10 E-value=6.9e-06 Score=52.49 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=28.5
Q ss_pred CCCeEEEecCcCCCCeEEEEEEECCccEEEE
Q psy8869 542 LDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 572 (593)
Q Consensus 542 ~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v 572 (593)
+||.|+|++|||+|+.|.|.+++.++.++.|
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~~~V~v 31 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDRSKVRVTV 31 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEETTTTEEEE
T ss_pred CCCEEEEeEcCCCCceEEEEEEECCCCEEEE
Confidence 6999999999999999999999999877665
No 385
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=1.9e-05 Score=74.35 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=63.3
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH-HHHhhc
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR-ELLNKY 161 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~-~~l~~~ 161 (593)
|.+..|...+...+..+|++++|+|+++....... .+ .....+.|.+ +++||+|+.+.+...+.+..... ...+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~-~l-~~~~~~~~~i-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIP-RL-RLFGGNNPVI-LVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccch-hH-HHhcCCCcEE-EEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 33444566666677899999999999874422222 22 2223466755 56899999754221111111110 111222
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++. ..+++++||++| .++++|++.|...++
T Consensus 96 ~~~--~~~i~~vSA~~~----------~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLK--PKDVILISAKKG----------WGVEELINAIKKLAK 125 (190)
T ss_pred CCC--cccEEEEECCCC----------CCHHHHHHHHHHHhh
Confidence 221 236899999998 689999999988764
No 386
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.08 E-value=6.4e-05 Score=76.62 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred eeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-----------ChhhHHHHHHHHH----cCCCe
Q psy8869 66 AHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVPY 130 (593)
Q Consensus 66 ~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-----------~~qt~e~l~~~~~----l~ip~ 130 (593)
....|+.++..+.++|++|+....+.|...+..++++++|+|.++-- ...+...+..+.. .+.|.
T Consensus 152 ~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi 231 (317)
T cd00066 152 VETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI 231 (317)
T ss_pred eEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence 34456667888999999999999999999999999999999998621 1222222222222 25674
Q ss_pred EEEEEeecCCC
Q psy8869 131 IVVFLNKADMV 141 (593)
Q Consensus 131 iiVvvNK~Dl~ 141 (593)
+++.||.|+.
T Consensus 232 -ll~~NK~D~f 241 (317)
T cd00066 232 -ILFLNKKDLF 241 (317)
T ss_pred -EEEccChHHH
Confidence 5567999964
No 387
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.03 E-value=6.6e-06 Score=75.83 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=39.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
..++++++|.+|+|||||+|+|++..... .....|+|.......+ +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~---------------~~~~pg~T~~~~~~~~---~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN---------------VGATPGVTKSMQEVHL---DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce---------------ecCCCCeEcceEEEEe---CCCEEEEECcC
Confidence 34799999999999999999998642211 1123477776554443 24588999999
No 388
>KOG1954|consensus
Probab=98.00 E-value=8e-05 Score=73.78 Aligned_cols=133 Identities=21% Similarity=0.161 Sum_probs=80.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhh---hcCCcc--ccccccCCChhhhhcCceEEeee-eEE-----------------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSK---KFGGEA--KSYDQIDAAPEEKARGITINTAH-IEY----------------- 70 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~---~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~-~~~----------------- 70 (593)
-|.++|.-..||||+++.|+..... .|.... +...+|--..++.-.|.+.-... ..|
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 5899999999999999999865211 111111 11122333334444444432210 011
Q ss_pred eeC---CeEEEEEecCChhhhHHH-----------HHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEE
Q psy8869 71 ETK---ARHYAHVDCPGHADYIKN-----------MITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFL 135 (593)
Q Consensus 71 ~~~---~~~~~iiDtpGh~~~~~~-----------~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvv 135 (593)
... -..++|+||||.-.-.+. ..=.+..+|.++|+.|+.. .+...+.+.+..++...=+ +=||+
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVVL 218 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVVL 218 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEEe
Confidence 011 135889999993222222 2223458999999999976 6777888888877766544 44568
Q ss_pred eecCCCCHHHHH
Q psy8869 136 NKADMVDDEELL 147 (593)
Q Consensus 136 NK~Dl~~~~~~~ 147 (593)
||.|.++.++..
T Consensus 219 NKADqVdtqqLm 230 (532)
T KOG1954|consen 219 NKADQVDTQQLM 230 (532)
T ss_pred ccccccCHHHHH
Confidence 999999986543
No 389
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.99 E-value=4.2e-05 Score=69.65 Aligned_cols=90 Identities=18% Similarity=0.063 Sum_probs=57.4
Q ss_pred HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
...+..+|.+++|+|+.++...+.......+... +.|.++ ++||+|+.+.++. ...+..+-+. + ..-+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~il-VlNKiDl~~~~~~----~~~~~~~~~~--~---~~~~ 72 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIF-VLNKCDLVPTWVT----ARWVKILSKE--Y---PTIA 72 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEE-EEEchhcCCHHHH----HHHHHHHhcC--C---cEEE
Confidence 4567789999999999986555454444444443 377554 6899999875322 1112222111 1 1226
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+++||+++ .++++|++.+..++
T Consensus 73 ~~iSa~~~----------~~~~~L~~~l~~~~ 94 (157)
T cd01858 73 FHASINNP----------FGKGSLIQLLRQFS 94 (157)
T ss_pred EEeecccc----------ccHHHHHHHHHHHH
Confidence 89999987 57888888887653
No 390
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.99 E-value=6e-06 Score=74.30 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=33.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
-.++++|+.|+|||||+|.|....... +...+....+|.-.......+..+. ...+|||||..+|-
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~----------t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK----------TGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS--------------S--------------SEEEEEETT-SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh----------hhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccc
Confidence 578999999999999999998642111 1222222234432222222333322 35799999976653
No 391
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=97.98 E-value=1.1e-05 Score=64.51 Aligned_cols=80 Identities=19% Similarity=0.417 Sum_probs=55.0
Q ss_pred eEEEeeccCcHHHHHHHHHHHHHhc-C-CccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhcc
Q psy8869 421 WYVIHSYSGMEKNVQRKLIERINKL-G-MQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNT 498 (593)
Q Consensus 421 Wyvl~t~~~~E~~~~~~L~~~~~~~-~-~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 498 (593)
-|+++|++|+|..++..|..+.... . -.-..+.+|.|.. ++|||||.+...++....++.+
T Consensus 2 iw~Vkc~~G~E~~v~~~l~~k~~~~~~~~~l~I~Si~~~~~-----------------lkGyIyVEA~~~~~V~~ai~gi 64 (84)
T PF03439_consen 2 IWAVKCKPGQEREVAISLMNKAEDLAKKNNLNIYSIFAPDS-----------------LKGYIYVEAERESDVKEAIRGI 64 (84)
T ss_dssp EEEEEE-TTTHHHHHHHHHHHHHHHHHHST----EEEE-TT-----------------STSEEEEEESSHHHHHHHHTT-
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhcCCCceEEEEEeCC-----------------CceEEEEEeCCHHHHHHHHhcc
Confidence 5899999999999999998874221 0 0134556666654 9999999999888888999999
Q ss_pred CCeeEeccCCCCCceecCHHHHHHH
Q psy8869 499 KKVTGFIGGKSNRPTPISSKEIEEI 523 (593)
Q Consensus 499 ~~v~~~l~~~~~~p~~i~~~~~~~l 523 (593)
+++.+.. +..+|-+||..+
T Consensus 65 ~~i~~~~------~~~vp~~E~~~~ 83 (84)
T PF03439_consen 65 RHIRGSR------PGLVPIEEMEDL 83 (84)
T ss_dssp TTEEEEC------CEEB-GGGTCGG
T ss_pred cceeecc------ceeECHHHHHhh
Confidence 9998755 446777776543
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.96 E-value=5.6e-05 Score=79.68 Aligned_cols=127 Identities=21% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh---h------hhcCceEEeeeeE----------E
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAHIE----------Y 70 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~~----------~ 70 (593)
.+...|.++|.+|+||||++..|.......+...... ..|.... | ...|+.+...... +
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV--~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV--AADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 3457899999999999999999987665443211111 1222111 1 1122322211000 0
Q ss_pred -eeCCeEEEEEecCChhhhHHHH------HHhhhcCCEEEEEEECCCCCChhhHHHHHHHH-HcCCCeEEEEEeecCCCC
Q psy8869 71 -ETKARHYAHVDCPGHADYIKNM------ITGAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 71 -~~~~~~~~iiDtpGh~~~~~~~------~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~-~l~ip~iiVvvNK~Dl~~ 142 (593)
....+.+.|+||||.......+ +..+..+|.++||+|++.|. ...+.+.... .+++.. +++||+|...
T Consensus 171 ~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~~l~i~g--vIlTKlD~~a 246 (437)
T PRK00771 171 EKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHEAVGIGG--IIITKLDGTA 246 (437)
T ss_pred HHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHhcCCCCE--EEEecccCCC
Confidence 0123478999999965543332 22344789999999998862 2233332222 234443 3469999754
No 393
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.94 E-value=4.3e-05 Score=76.44 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=64.9
Q ss_pred cCCh-hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 82 CPGH-ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 82 tpGh-~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
-||| .+-.+.+...+..+|.+++|+||..+......+....+ .+.|. |+++||+|+.+.+.. + ...+.++.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~-IiVlNK~DL~~~~~~-~----~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPR-LIVLNKADLADPAVT-K----QWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCE-EEEEEccccCCHHHH-H----HHHHHHHH
Confidence 3886 45567777778899999999999875544333333332 25665 456899999865322 1 11122222
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. ..+++++||+++ .++.+|++.+...++
T Consensus 76 ~-----~~~vi~iSa~~~----------~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 K-----GIKALAINAKKG----------KGVKKIIKAAKKLLK 103 (276)
T ss_pred c-----CCeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 1 247899999987 678889888877664
No 394
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.94 E-value=4.6e-05 Score=78.35 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=55.3
Q ss_pred eeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-----------ChhhHHHHHHHHH----cCCC
Q psy8869 65 TAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ----VGVP 129 (593)
Q Consensus 65 ~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-----------~~qt~e~l~~~~~----l~ip 129 (593)
.....+..++..+.++|.+|+..+.+.|...+..++++++|+|.++-- ...+.+.+..+.. .+.|
T Consensus 174 i~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p 253 (342)
T smart00275 174 IQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS 253 (342)
T ss_pred eEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc
Confidence 344456677888899999999999999999999999999999998621 1233333333322 2567
Q ss_pred eEEEEEeecCCCC
Q psy8869 130 YIVVFLNKADMVD 142 (593)
Q Consensus 130 ~iiVvvNK~Dl~~ 142 (593)
++++.||.|+..
T Consensus 254 -iil~~NK~D~~~ 265 (342)
T smart00275 254 -IILFLNKIDLFE 265 (342)
T ss_pred -EEEEEecHHhHH
Confidence 555679999653
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.93 E-value=4.5e-05 Score=68.53 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
.++.+.|+||||..... ...+..+|.+++|+....+-....+ ....+..-.++ +|||+|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~----k~~~~~~~~~~-~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIV-VVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh----hhhHhhhcCEE-EEeCCC
Confidence 46789999999965333 3456789999999887632211111 22223334455 579998
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=97.90 E-value=8.3e-05 Score=78.20 Aligned_cols=127 Identities=21% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhh-cCCccccccccCCChh---------hhhcCceEEeeee-----------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK-FGGEAKSYDQIDAAPE---------EKARGITINTAHI----------- 68 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~----------- 68 (593)
.+...|.++|..|+||||++..|....... +....... .|.... -...|+.+.....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~--~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA--ADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE--ccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 346789999999999999999998766554 32211111 221111 0112332211100
Q ss_pred --EEeeCCeEEEEEecCChh----hhHHHHHH--hhhcCCEEEEEEECCCCCChhhHHHHHHHH-HcCCCeEEEEEeecC
Q psy8869 69 --EYETKARHYAHVDCPGHA----DYIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKAD 139 (593)
Q Consensus 69 --~~~~~~~~~~iiDtpGh~----~~~~~~~~--~~~~~d~~ilVvda~~g~~~qt~e~l~~~~-~l~ip~iiVvvNK~D 139 (593)
.....++.+.|+||||.. .....+.. ....++.++||+|+..| ....+.+.... .+++..+ ++||+|
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~gi--IlTKlD 251 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGV--ILTKLD 251 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEE--EEeCcc
Confidence 012245779999999943 23322222 22367888999999764 22222332222 3455544 469999
Q ss_pred CCC
Q psy8869 140 MVD 142 (593)
Q Consensus 140 l~~ 142 (593)
...
T Consensus 252 ~~~ 254 (433)
T PRK10867 252 GDA 254 (433)
T ss_pred Ccc
Confidence 653
No 397
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.90 E-value=7.3e-05 Score=67.89 Aligned_cols=82 Identities=27% Similarity=0.200 Sum_probs=53.2
Q ss_pred CEEEEEEECCCCCChhhHHHH-HHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 100 DGAILVCSAADGPMPQTREHI-LLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l-~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
|.+++|+|+.++......... ..+...++|.++ ++||+|+.+.++..+. +..+ .... ..+++++||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~Ii-VlNK~Dl~~~~~~~~~----~~~~-~~~~----~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLIL-VLNKADLVPKEVLRKW----LAYL-RHSY----PTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEE-EEechhcCCHHHHHHH----HHHH-HhhC----CceEEEEeccCC
Confidence 789999999886555444333 355566788555 6899999875322111 1112 1111 356899999997
Q ss_pred ccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 179 LEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 179 ~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++.+|++.+...
T Consensus 71 ----------~gi~~L~~~i~~~ 83 (155)
T cd01849 71 ----------QGIEKKESAFTKQ 83 (155)
T ss_pred ----------cChhhHHHHHHHH
Confidence 6788888887654
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00032 Score=74.57 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=66.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hhh--h----cCceEEeeee-------EEeeCC
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EEK--A----RGITINTAHI-------EYETKA 74 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e~--~----~g~t~~~~~~-------~~~~~~ 74 (593)
..-.|+++|..|+||||++..|.........+........|... .|. . -|+.+..... .-...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34689999999999999999998765443221111111123211 111 1 1121111100 001246
Q ss_pred eEEEEEecCChhhhHHHH------HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 75 RHYAHVDCPGHADYIKNM------ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~------~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
+++.||||||........ +... .....+||++++.+... ..+.+......+... +++||+|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~D-l~eii~~f~~~~~~g--vILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSD-LDEVVRRFAHAKPQG--VVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhH-HHHHHHHHHhhCCeE--EEEecCcCcc
Confidence 789999999954332221 1211 23457888998864322 223333333344433 3479999754
No 399
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.87 E-value=9e-05 Score=66.10 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=54.1
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
+.....+..+|.+++|+|++++...+..+....+... +.|.++ ++||+|+.+.+.. . +..+.++..+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~ii-vlNK~DL~~~~~~-~----~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNIL-LLNKADLLTEEQR-K----AWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEE-EEechhcCCHHHH-H----HHHHHHHhcC-----
Confidence 3455667899999999999987766666666666655 778554 6899999865321 1 2233333322
Q ss_pred ceEEEeccCccc
Q psy8869 168 IPIIKGSAKLAL 179 (593)
Q Consensus 168 ~~vi~~Sa~~g~ 179 (593)
.+++++||+++.
T Consensus 72 ~~ii~iSa~~~~ 83 (141)
T cd01857 72 IVVVFFSALKEN 83 (141)
T ss_pred CeEEEEEecCCC
Confidence 469999999874
No 400
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.85 E-value=5.9e-05 Score=70.79 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCeEEEEEec-CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 73 KARHYAHVDC-PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 73 ~~~~~~iiDt-pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
+.+.+.++|| +|-+.|-+-+ ...+|.+|+|+|++.......++.-.++..++++++-+++||+|..
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4577889999 6666665544 3479999999999876656666677888899988888889999954
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=7.4e-05 Score=76.15 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=68.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hhh------hcCceEEeeee--E-------Ee
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EEK------ARGITINTAHI--E-------YE 71 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e~------~~g~t~~~~~~--~-------~~ 71 (593)
.+.-.++++|+.|+||||++..|.......+..... ...|... .|+ .-++.+....- . +.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~l--ItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF--ITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--EeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 345689999999999999999998665433321111 1122211 010 01121111000 0 01
Q ss_pred -eCCeEEEEEecCChhhh----HHHHHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 72 -TKARHYAHVDCPGHADY----IKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 72 -~~~~~~~iiDtpGh~~~----~~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
..++.+.||||||...+ +..+.... ..+|..+||+|++... .+..+.+.....+++..+| +||+|...
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~-~d~~~i~~~f~~l~i~glI--~TKLDET~ 356 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS-ADVMTILPKLAEIPIDGFI--ITKMDETT 356 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH-HHHHHHHHhcCcCCCCEEE--EEcccCCC
Confidence 13568999999997433 33333222 2557778888874322 1222233333445666555 59999764
No 402
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00011 Score=75.10 Aligned_cols=127 Identities=23% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hh------hhcCceEEee-------------
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTA------------- 66 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~------------- 66 (593)
.++...|.++|--||||||.++.|.......+....... .|.+. .| ..-++.+...
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa--aD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA--ADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEe--cccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHH
Confidence 567889999999999999999999877665433221111 11110 00 0111111100
Q ss_pred eeEEeeCCeEEEEEecCChh----hhHHHHH--HhhhcCCEEEEEEECCCCCChhhHHHHHHH--HHcCCCeEEEEEeec
Q psy8869 67 HIEYETKARHYAHVDCPGHA----DYIKNMI--TGAAQMDGAILVCSAADGPMPQTREHILLA--RQVGVPYIVVFLNKA 138 (593)
Q Consensus 67 ~~~~~~~~~~~~iiDtpGh~----~~~~~~~--~~~~~~d~~ilVvda~~g~~~qt~e~l~~~--~~l~ip~iiVvvNK~ 138 (593)
.-.+....+++.|+||+|.. ..+.++. .....+|-++||+||..| |.-.....+ .++++-- |++||+
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itG--vIlTKl 249 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITG--VILTKL 249 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCce--EEEEcc
Confidence 01123345689999999943 3333332 233488999999999874 443333222 3345553 347999
Q ss_pred CCCC
Q psy8869 139 DMVD 142 (593)
Q Consensus 139 Dl~~ 142 (593)
|-..
T Consensus 250 DGda 253 (451)
T COG0541 250 DGDA 253 (451)
T ss_pred cCCC
Confidence 9653
No 403
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.84 E-value=2.4e-05 Score=71.06 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=39.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
....+++++|.+|+|||||+|.|+...... .....|.|.......+ +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~---------------~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK---------------VGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc---------------ccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 356889999999999999999998642211 1112355655544433 24589999999
No 404
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.84 E-value=0.00022 Score=58.54 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=57.1
Q ss_pred EEEEEEEEeC-CCcEEEEEEEEeeeEecCCEEEEeecC-------CceEEEEEEEEec----ceecceeeecceEEEEec
Q psy8869 215 LPVEDVFSIS-GRGTVVTGRVERGIVRVGEELEIIGIK-------DTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLR 282 (593)
Q Consensus 215 ~~i~~~~~~~-~~G~v~~G~v~~G~l~~gd~v~i~p~~-------~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~ 282 (593)
+.|.++...+ ..|.+..+||.+|+|+.||.+++...+ ...+.++..+... ..++++|.|||+|++.
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~-- 80 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV-- 80 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--
Confidence 4566777777 789999999999999999999876411 2234566676544 3688999999999884
Q ss_pred cCCccCCccceEEe
Q psy8869 283 GTKREDVERGQVLA 296 (593)
Q Consensus 283 ~~~~~~i~~G~vl~ 296 (593)
++ .+++.|++.+
T Consensus 81 g~--~~~~~g~~~~ 92 (93)
T cd03700 81 GL--DQLKSGTTAT 92 (93)
T ss_pred CC--ccCceEeEec
Confidence 33 3466777643
No 405
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.83 E-value=0.00026 Score=65.97 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=57.4
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHH
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEI 152 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~ 152 (593)
..+.+.++|||+... ......+..+|.+++++.+...........+..+...+++.. +++||+|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~-vV~N~~~~~~~------~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVG-VVINKYDLNDE------IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEE-EEEeCCCCCcc------hHH
Confidence 567899999996532 234455678999999999987655666777777888888865 56799996542 122
Q ss_pred HHHHHHhhcCC
Q psy8869 153 EIRELLNKYEF 163 (593)
Q Consensus 153 ~~~~~l~~~~~ 163 (593)
++.++++.+++
T Consensus 162 ~~~~~~~~~~~ 172 (179)
T cd03110 162 EIEDYCEEEGI 172 (179)
T ss_pred HHHHHHHHcCC
Confidence 45556665543
No 406
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.82 E-value=5.1e-05 Score=73.28 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh-
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD- 87 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~- 87 (593)
..+...|+++|..++|||||+|+|++... .+. .........+|+-+....... ..+..+.++||||..+
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~-----~f~----~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLS-----GFD----VMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGR 73 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCC-----CeE----ecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCcc
Confidence 46778999999999999999999986520 000 001111122333322221111 2457899999999432
Q ss_pred -----hHHHHHHhhhc--CCEEEEEEECCC
Q psy8869 88 -----YIKNMITGAAQ--MDGAILVCSAAD 110 (593)
Q Consensus 88 -----~~~~~~~~~~~--~d~~ilVvda~~ 110 (593)
-....+.++.. +|+.|+.++...
T Consensus 74 ~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 74 ERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred ccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 23333445554 899998888754
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.82 E-value=0.0001 Score=77.48 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhh-hcCCccccccccCCChh---------hhhcCceEEeeee-----------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSK-KFGGEAKSYDQIDAAPE---------EKARGITINTAHI----------- 68 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~-~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~----------- 68 (593)
++...|.++|++|+||||++..|...... .+...... ..|.... ....|+.......
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV--~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV--ACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE--eccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 34578999999999999999999876432 22211111 1222111 0111222111100
Q ss_pred --EEeeCCeEEEEEecCChhhh----HHHHH--HhhhcCCEEEEEEECCCCCChhhHHHHHHH-HHcCCCeEEEEEeecC
Q psy8869 69 --EYETKARHYAHVDCPGHADY----IKNMI--TGAAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNKAD 139 (593)
Q Consensus 69 --~~~~~~~~~~iiDtpGh~~~----~~~~~--~~~~~~d~~ilVvda~~g~~~qt~e~l~~~-~~l~ip~iiVvvNK~D 139 (593)
.....++.+.|+||||.... ...+. .....+|.++||+|+..+ ....++.... ...++..+| +||+|
T Consensus 175 l~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giI--lTKlD 250 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVV--LTKLD 250 (428)
T ss_pred HHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEE--EeCcc
Confidence 01124567999999995332 22221 122368999999999864 2333333322 345666444 69999
Q ss_pred CCC
Q psy8869 140 MVD 142 (593)
Q Consensus 140 l~~ 142 (593)
...
T Consensus 251 ~~~ 253 (428)
T TIGR00959 251 GDA 253 (428)
T ss_pred Ccc
Confidence 653
No 408
>KOG0096|consensus
Probab=97.81 E-value=7e-05 Score=67.47 Aligned_cols=140 Identities=20% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee--eeEEee--CCeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYET--KARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~--~~~~~~iiDtpGh 85 (593)
.+.++++++|..+.||||++.+.+.+..+. ....|+... ...|.+ +..++..|||.|+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~------------------~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq 69 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEK------------------TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ 69 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhccccee------------------cccCcceeEEeeeeeecccCcEEEEeeecccc
Confidence 578999999999999999999876542221 111222222 122222 2367889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC--hhhHHHHHHHHHc-CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM--PQTREHILLARQV-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~--~qt~e~l~~~~~l-~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
++|....-.++-++.+|++..|.+.-.. .-.+.|=.+++.. ++| |+++-||.|.-+.+ ++..--.+..
T Consensus 70 Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r~-----~k~k~v~~~r--- 140 (216)
T KOG0096|consen 70 EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKVDIKARK-----VKAKPVSFHR--- 140 (216)
T ss_pred eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccceeccccc-----cccccceeee---
Confidence 9998877777778999999999886433 2334444444443 467 66788999976542 1110011111
Q ss_pred CCCCCceEEEeccCcc
Q psy8869 163 FPGNDIPIIKGSAKLA 178 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g 178 (593)
..++..+.+||++.
T Consensus 141 --kknl~y~~iSaksn 154 (216)
T KOG0096|consen 141 --KKNLQYYEISAKSN 154 (216)
T ss_pred --cccceeEEeecccc
Confidence 23678999999875
No 409
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.80 E-value=2.7e-05 Score=69.49 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=35.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
+++++|.+|+|||||+|+|++..... .....|.|.......+ +. .+.|+||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~---------------~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS---------------VSATPGKTKHFQTIFL--TP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee---------------eCCCCCcccceEEEEe--CC-CEEEEECCCc
Confidence 89999999999999999998532110 0012234444433333 22 5799999995
No 410
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.80 E-value=7.6e-05 Score=73.10 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=58.1
Q ss_pred HhhhcCCEEEEEEECCCCC--ChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEE
Q psy8869 94 TGAAQMDGAILVCSAADGP--MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPII 171 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~--~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi 171 (593)
..++++|.+++|+|+++.. .......+..+...++|.+| ++||+|+.+.....+ +..+ ..+.. ..+++
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vI-V~NK~DL~~~~~~~~---~~~~-~~~~~-----g~~v~ 101 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPII-VLNKIDLLDDEDMEK---EQLD-IYRNI-----GYQVL 101 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECcccCCCHHHHH---HHHH-HHHHC-----CCeEE
Confidence 4577999999999998643 34445556666667888666 579999976432211 1222 22222 46799
Q ss_pred EeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 172 KGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 172 ~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
.+||++| .++++|++.+.
T Consensus 102 ~~SAktg----------~gi~eLf~~l~ 119 (245)
T TIGR00157 102 MTSSKNQ----------DGLKELIEALQ 119 (245)
T ss_pred EEecCCc----------hhHHHHHhhhc
Confidence 9999998 67888887664
No 411
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.79 E-value=0.00018 Score=71.02 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=71.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-------hh--hhcCceEEeeee---------EE-e
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-------EE--KARGITINTAHI---------EY-E 71 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-------~e--~~~g~t~~~~~~---------~~-~ 71 (593)
+.-+++++|..|+||||++..|.......+.... ....|... .+ ..-+.++....- .+ .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~--~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG--FITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE--EEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 4468999999999999999999876543221111 11122221 00 011222111100 00 1
Q ss_pred eCCeEEEEEecCChhh----hHHHHHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 72 TKARHYAHVDCPGHAD----YIKNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~----~~~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
..+..+.|+||||... .+..+...+ ..+|-.+||+||+.+. .+..+.+..-...++..+| +||.|....
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~~~~I--~TKlDet~~ 226 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDGIV--FTKFDETAS 226 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCCCEEE--EEeecCCCC
Confidence 1356899999999543 344443332 3568899999997533 2223344444456777665 599998753
No 412
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.78 E-value=8.8e-05 Score=74.59 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=65.2
Q ss_pred cCChh-hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 82 CPGHA-DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 82 tpGh~-~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
-|||- +-.+.+...+..+|.+|+|+|+..+......+...... +.|.+ +++||+|+.+.+.. + ...+.++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~i-iVlNK~DL~~~~~~-~----~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRL-LILNKSDLADPEVT-K----KWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEE-EEEEchhcCCHHHH-H----HHHHHHHH
Confidence 58874 44566677788999999999998766544443333332 66755 46899999865221 1 11222222
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. ..+++++|+.++ .++..|++.+...++
T Consensus 79 ~-----~~~vi~vSa~~~----------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 Q-----GIKALAINAKKG----------QGVKKILKAAKKLLK 106 (287)
T ss_pred c-----CCeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 1 257899999987 678888888877654
No 413
>KOG0780|consensus
Probab=97.78 E-value=0.00015 Score=72.56 Aligned_cols=127 Identities=22% Similarity=0.124 Sum_probs=77.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCcccccccc------CCChh-hhhcCceEEeeee-------------EEe
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQI------DAAPE-EKARGITINTAHI-------------EYE 71 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~------d~~~~-e~~~g~t~~~~~~-------------~~~ 71 (593)
.--|.++|--|+||||.+..|.......+......+..+ |.+.. ....++.+..++. .|.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 346789999999999999999887776665444433322 22222 1223444433221 245
Q ss_pred eCCeEEEEEecCCh----hhhHHHHHHh--hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 72 TKARHYAHVDCPGH----ADYIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 72 ~~~~~~~iiDtpGh----~~~~~~~~~~--~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
.++..+.|+||.|. .....+|..- +-.+|-+|+|+||+- +|..+....+....+..--|++||+|-.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi---GQaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI---GQAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc---cHhHHHHHHHHHHhhccceEEEEecccC
Confidence 57888999999993 2234444432 337899999999987 4444433333333333333457999954
No 414
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.76 E-value=2.9e-05 Score=73.10 Aligned_cols=62 Identities=24% Similarity=0.220 Sum_probs=41.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
.+++++|.+|+|||||+|+|.......... ..........|.|.+.....+.. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~-------~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL-------KDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc-------ccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 579999999999999999998653211100 00112223447787776555532 579999999
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00014 Score=76.02 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=69.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---------hhhhcCceEEeeee-------EEeeCC
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---------EEKARGITINTAHI-------EYETKA 74 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~-------~~~~~~ 74 (593)
..-.|+++|..|+||||++..|........+.........|... .-...|+......- .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999999998643211110000000011100 00111222221110 123456
Q ss_pred eEEEEEecCChhhhHHH---HHH---hhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 75 RHYAHVDCPGHADYIKN---MIT---GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~---~~~---~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
+.+.+|||+|....... .+. .....+-.+||+||+.+.. ...+.+..-..+++..+| +||+|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~~I--~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHGCI--ITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCEEE--EEeeeCCCC
Confidence 78899999995443222 112 2223567899999985332 122233334456777765 599997753
No 416
>PRK12289 GTPase RsgA; Reviewed
Probab=97.71 E-value=0.00021 Score=73.45 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=57.4
Q ss_pred hhcCCEEEEEEECCCCCC-h-hhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q psy8869 96 AAQMDGAILVCSAADGPM-P-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~-~-qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~ 173 (593)
+.++|.+++|+|+.+... . +..+.+..+...++|.++ |+||+|+++.++. + ...+.+..+ .++++++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~IL-VlNK~DLv~~~~~-~----~~~~~~~~~-----g~~v~~i 155 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVL-CLNKADLVSPTEQ-Q----QWQDRLQQW-----GYQPLFI 155 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEEchhcCChHHH-H----HHHHHHHhc-----CCeEEEE
Confidence 678999999999986432 2 345566666677899665 5799999875332 1 222333333 3568999
Q ss_pred ccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 174 SAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 174 Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
||+++ .++++|++.|.
T Consensus 156 SA~tg----------~GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETG----------IGLEALLEQLR 171 (352)
T ss_pred EcCCC----------CCHHHHhhhhc
Confidence 99998 68888888763
No 417
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.70 E-value=0.00028 Score=74.98 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=43.6
Q ss_pred cCCCeEEEEEeecCCCC-------H-HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHH
Q psy8869 126 VGVPYIVVFLNKADMVD-------D-EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKA 197 (593)
Q Consensus 126 l~ip~iiVvvNK~Dl~~-------~-~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~ 197 (593)
+|+| ++||++|+|... + ++.++.+.+-++.+|-.+| ..+|.+|.+.. .+++.|..+
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~----------~n~~~L~~y 258 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEE----------KNLDLLYKY 258 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeecccc----------ccHHHHHHH
Confidence 4788 455679999753 1 4556777778888887665 56899998875 567778888
Q ss_pred hhhhC
Q psy8869 198 LDTYI 202 (593)
Q Consensus 198 l~~~l 202 (593)
|...+
T Consensus 259 i~h~l 263 (472)
T PF05783_consen 259 ILHRL 263 (472)
T ss_pred HHHHh
Confidence 76654
No 418
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.69 E-value=0.00047 Score=56.69 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=51.4
Q ss_pred eEEEEEEEEeCCC-cEEEEEEEEeeeEecCCEEEEeecC-------CceEEEEEEEEec----ceecceeeecceEEEEe
Q psy8869 214 LLPVEDVFSISGR-GTVVTGRVERGIVRVGEELEIIGIK-------DTVKTTCTGVEMF----RKLLDQGQAGDNIGLLL 281 (593)
Q Consensus 214 ~~~i~~~~~~~~~-G~v~~G~v~~G~l~~gd~v~i~p~~-------~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l 281 (593)
...|.++...+.. +.+..+||.+|+|+.||.|++...+ .....+|..|... ..++++|.|||+|++
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v-- 79 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI-- 79 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--
Confidence 3567777777776 6689999999999999999875211 1134566676654 368999999999988
Q ss_pred ccCC
Q psy8869 282 RGTK 285 (593)
Q Consensus 282 ~~~~ 285 (593)
.+++
T Consensus 80 ~gl~ 83 (94)
T cd04090 80 KGID 83 (94)
T ss_pred ECcc
Confidence 4443
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00018 Score=74.65 Aligned_cols=129 Identities=17% Similarity=0.122 Sum_probs=71.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhc--CCccccccccCCCh---hhh------hcCceEEeeee--E-----EeeC
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAP---EEK------ARGITINTAHI--E-----YETK 73 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~---~e~------~~g~t~~~~~~--~-----~~~~ 73 (593)
...|+++|+.|+||||.+..|........ .+........|... .|+ .-|+.+..... . -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45899999999999999999986544321 11111111122211 000 01222211110 0 0225
Q ss_pred CeEEEEEecCChhhh----HHHHHHhhh--cCC-EEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 74 ARHYAHVDCPGHADY----IKNMITGAA--QMD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~----~~~~~~~~~--~~d-~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
++.+.|+||||.... +..+...+. .++ -.+||+||+.+... ..+.+.....+++..+| +||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~~~~~I--~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFSYKTVI--FTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCCCCEEE--EEeccCCCc
Confidence 678999999994332 223333222 223 68999999987433 33455555556777765 599997653
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00012 Score=75.88 Aligned_cols=127 Identities=18% Similarity=0.111 Sum_probs=69.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhh-hhcCCccccccccCCCh---hh------hhcCceEEee------eeEEeeCCe
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAP---EE------KARGITINTA------HIEYETKAR 75 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~------~~~~~~~~~ 75 (593)
...++++|..|+||||++.+|..... ..+..-. ....|... .+ ...|+..... ...+...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~--Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS--LYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE--EecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 45789999999999999999986432 2111110 01112211 00 1112221110 000112467
Q ss_pred EEEEEecCChhh----hHHHHHHhhh-----cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 76 HYAHVDCPGHAD----YIKNMITGAA-----QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 76 ~~~iiDtpGh~~----~~~~~~~~~~-----~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
.+.+|||||... .+..+...+. ...-.+||+||+.+.. +..+.+..-..+++..+| +||+|....
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~glI--lTKLDEt~~ 374 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRRIL--LTKLDEADF 374 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCEEE--EEcccCCCC
Confidence 889999999542 2222222221 2446899999987542 234444444667888765 599997653
No 421
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.68 E-value=0.00014 Score=67.67 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=38.1
Q ss_pred CeEEEEEecCChhhhHHH-----HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH
Q psy8869 74 ARHYAHVDCPGHADYIKN-----MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE 144 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~-----~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~ 144 (593)
...+.||.+.|-.+-... ........+.++.|+|+..-....... -.+..++..-.+|| +||+|+++.+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~-~~~~~Qi~~ADvIv-lnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIP-ELLREQIAFADVIV-LNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHC-HHHHHHHCT-SEEE-EE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccch-hhhhhcchhcCEEE-EeccccCChh
Confidence 356789999993332222 112223568999999996632122222 22344444455664 7999999864
No 422
>KOG3887|consensus
Probab=97.68 E-value=0.00011 Score=68.77 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=91.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|.++|+--+|||++.....+.+..+ +..-.|....+|.+. +...=.++.+||.||+-+|.....
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPn-----------eTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~ 93 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPN-----------ETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSF 93 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCC-----------ceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCcc
Confidence 49999999999999988766543211 111112222222211 111123467899999877753322
Q ss_pred ---HhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCCCe---EEEEEeecCCCCHHH---HHHHHHHHHHHHHhhcCC
Q psy8869 94 ---TGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPY---IVVFLNKADMVDDEE---LLELVEIEIRELLNKYEF 163 (593)
Q Consensus 94 ---~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~ip~---iiVvvNK~Dl~~~~~---~~~~~~~~~~~~l~~~~~ 163 (593)
.-.+++.+.++||||.+.. .+.++-|+..+++..+.+ +=|.+-|.|-.+.+. ....+.+...+-++..+.
T Consensus 94 D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gl 173 (347)
T KOG3887|consen 94 DYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGL 173 (347)
T ss_pred CHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhh
Confidence 2245789999999998754 366788888888875432 556789999776532 222344455555666666
Q ss_pred CCCCceEEEeccCc
Q psy8869 164 PGNDIPIIKGSAKL 177 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~ 177 (593)
.+-.+.+..+|-..
T Consensus 174 e~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 174 EKVQVSFYLTSIYD 187 (347)
T ss_pred ccceEEEEEeeecc
Confidence 54456677777765
No 423
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.68 E-value=7.7e-05 Score=75.00 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=40.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
++.++++++|.+|+|||||+|+|++...... ....|+|........ +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~---------------~~~~g~T~~~~~~~~---~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT---------------GNRPGVTKAQQWIKL---GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc---------------CCCCCeEEEEEEEEe---CCcEEEEECCCc
Confidence 4568999999999999999999985421110 112367766654333 245889999994
No 424
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.67 E-value=0.00032 Score=65.16 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=71.9
Q ss_pred EEEEe-cCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhc--CceEEeeeeEEeeCCeEEEEEecCChhhhHHH
Q psy8869 15 VGTIG-HVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKAR--GITINTAHIEYETKARHYAHVDCPGHADYIKN 91 (593)
Q Consensus 15 I~i~G-~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~--g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~ 91 (593)
|++++ .-|+||||+.-.|...+...+...... .+|........ +..........+.-...+.++|+|+.... .
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllv--D~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~ 77 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLI--DADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--G 77 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEE--eCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--H
Confidence 34444 578999999999988776554221111 11211000000 00000000000011117999999985443 2
Q ss_pred HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 92 MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 92 ~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
....+..+|.+++++++.......+...+..+...+.+.+.+++|++|...
T Consensus 78 ~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 78 FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 445567899999999998766666666666777777777767789998653
No 425
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.66 E-value=8.1e-05 Score=68.78 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=39.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
..++++++|.+|+|||||+++|+...... .....|.|.......++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~---------------~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK---------------VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcee---------------ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 44799999999999999999998532110 01122566665554443 45889999994
No 426
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.65 E-value=0.00012 Score=75.01 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=53.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh-hhcCCccccccccCCChhhhhcCceEEeee--------e-EEeeCCeEEEEEec
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPEEKARGITINTAH--------I-EYETKARHYAHVDC 82 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~--------~-~~~~~~~~~~iiDt 82 (593)
++++++|.+++|||||+++|+.... ..+...+. ..+...|+-.-... + .-......+.++|.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft--------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~Di 74 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT--------TIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDI 74 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC--------CCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEec
Confidence 7899999999999999999997643 22211110 00001111000000 0 00112235789999
Q ss_pred CChhh-------hHHHHHHhhhcCCEEEEEEECCC
Q psy8869 83 PGHAD-------YIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 83 pGh~~-------~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
||-.. .-...+.-++.+|+++.|||+.+
T Consensus 75 aGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 75 AGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99322 34455666789999999999964
No 427
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.64 E-value=7.6e-05 Score=74.62 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=39.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
.+.++++++|.+|+|||||+|+|++...... ....|+|.......+ + ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~---------------~~~~g~T~~~~~~~~--~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV---------------GNRPGVTKGQQWIKL--S-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc---------------CCCCCeecceEEEEe--C-CCEEEEECCCc
Confidence 3568999999999999999999985321110 112356665544433 2 35789999995
No 428
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.64 E-value=0.00029 Score=73.12 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=64.3
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
.++|..........++.+++|+|+.+....-..+....+ .+.| +++++||+|+.+.+...+.+.+.++++++..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 567776555555688999999999764322222211111 1556 5567899999764322233444445556665542
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
...++.+||++| .++++|++.|..+
T Consensus 127 --~~~i~~vSAk~g----------~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 --PVDIILVSAKKG----------NGIDELLDKIKKA 151 (360)
T ss_pred --cCcEEEecCCCC----------CCHHHHHHHHHHH
Confidence 124899999998 6889999988763
No 429
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=97.63 E-value=7.3e-05 Score=46.20 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=24.3
Q ss_pred ecCCCeEEEecCcCCCCeEEEEEEEC
Q psy8869 540 YQLDELVRIKDGPFTDFSGNIEEVNY 565 (593)
Q Consensus 540 ~~~G~~V~I~~Gpf~g~~g~V~~v~~ 565 (593)
+++|+.|+|++|||+|+.|+|.+++.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~~ 27 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVDG 27 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence 67999999999999999999999875
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.63 E-value=0.00025 Score=72.49 Aligned_cols=130 Identities=19% Similarity=0.139 Sum_probs=73.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hhhh------cCceEEeeee--E-----EeeCC
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EEKA------RGITINTAHI--E-----YETKA 74 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e~~------~g~t~~~~~~--~-----~~~~~ 74 (593)
+.-.|+++|++|+||||-+..|.....-..+.......-+|... +|+- -|+++....- . .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 46789999999999999999887544311111100000122221 1111 1222222110 0 12346
Q ss_pred eEEEEEecCChhhhHHHHHHhh----h--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 75 RHYAHVDCPGHADYIKNMITGA----A--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~~~~~----~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
+++.|+||.|+..+-...+..+ . ...-.-||++|+... ..-++.+..-..+++..+| +||+|....
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~~~I--~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPIDGLI--FTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCcceeE--EEcccccCc
Confidence 7899999999766643333322 2 345678889987522 2334455556667888777 499997753
No 431
>PRK00098 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.00029 Score=71.21 Aligned_cols=83 Identities=30% Similarity=0.394 Sum_probs=54.7
Q ss_pred hhcCCEEEEEEECCCCCC-hh-hHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q psy8869 96 AAQMDGAILVCSAADGPM-PQ-TREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~-~q-t~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~ 173 (593)
+.++|.+++|+|+.+... .. ..+.+..+...++|.+| ++||+|+.+..+..+ +..+..+.. ..+++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iI-VlNK~DL~~~~~~~~----~~~~~~~~~-----g~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPII-VLNKIDLLDDLEEAR----ELLALYRAI-----GYDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEEhHHcCCCHHHHH----HHHHHHHHC-----CCeEEEE
Confidence 578999999999976432 22 23455556777899665 579999974322211 222333333 3579999
Q ss_pred ccCccccCCCCCCCcCcHHHHHHHh
Q psy8869 174 SAKLALEGDTGPLGEQSILSLSKAL 198 (593)
Q Consensus 174 Sa~~g~~~~~~w~~~~~~~~ll~~l 198 (593)
||+++ .++++|++.+
T Consensus 148 SA~~g----------~gi~~L~~~l 162 (298)
T PRK00098 148 SAKEG----------EGLDELKPLL 162 (298)
T ss_pred eCCCC----------ccHHHHHhhc
Confidence 99997 6788777765
No 432
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.61 E-value=0.00015 Score=66.05 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q psy8869 15 VGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+++.|..|||||||+++|++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999865
No 433
>PRK12288 GTPase RsgA; Reviewed
Probab=97.59 E-value=5.7e-05 Score=77.55 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++++|.+|+|||||+|+|+......-+.- .....+.+-+|.....+.+..+ ..++||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i--------s~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDV--------SDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccc--------cCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 379999999999999999986422110000 0001122234545444444333 259999996554
No 434
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.59 E-value=0.0018 Score=71.31 Aligned_cols=182 Identities=18% Similarity=0.248 Sum_probs=125.4
Q ss_pred EecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe-ecCCCCHHHHHHHHHHHHHHHH
Q psy8869 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN-KADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 80 iDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN-K~Dl~~~~~~~~~~~~~~~~~l 158 (593)
-|+-|..+-+.+.+..+...+.-+=|+.+.-|. -|...+.++...+ -+|++.| |.+ . +.++..
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~--i~~~Dv~~a~~~~--a~i~~Fnv~~~---~---------~~~~~a 455 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG--ITETDISLASASN--AIIIGFNVRPD---A---------TAKNVA 455 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecCC--CchhhHHHHHhcC--CEEEEEecCCC---H---------HHHHHH
Confidence 688898888888888888778888888876554 4455555666654 3444544 332 1 222333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeee
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~ 238 (593)
+.. .++++.-+-... -++++.+++...+++ .....--....|..+|+.+..|.++..+|..|+
T Consensus 456 ~~~-----~v~i~~~~iIY~-----------l~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~ 518 (587)
T TIGR00487 456 EAE-----NVDIRYYSVIYK-----------LIDEIRAAMKGMLDP-EYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGV 518 (587)
T ss_pred HHc-----CCeEEEeChHHH-----------HHHHHHHHHHhccCc-ceeeEeeeeEEEEEEEecCCCCEEEEEEEecCE
Confidence 332 456666554331 234445555444432 222222334667899999888999999999999
Q ss_pred EecCCEEEEeecCCc-eEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEe
Q psy8869 239 VRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 239 l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
++.|..+++...+.. ...++.|++++++++.++..|+-|++.+.+. .+++.||+|-
T Consensus 519 i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 519 IKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred EecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 999999999864332 3578999999999999999999999999864 7899999985
No 435
>KOG4423|consensus
Probab=97.57 E-value=2.6e-05 Score=69.80 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=89.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe---EEEEEecCChhhhH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR---HYAHVDCPGHADYI 89 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~---~~~iiDtpGh~~~~ 89 (593)
.++.++|.-++|||+++.+.+.......... .+..+....-+.++++ ++.+||..|+++|-
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRA----------------tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA----------------TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHH----------------HHhHHHHHHHhccChHHHHHHHHhcchhhhhhc
Confidence 5899999999999999998876543221100 0111111111223333 34599999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHH-H----cC--CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 90 KNMITGAAQMDGAILVCSAADGP-MPQTREHILLAR-Q----VG--VPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~-~----l~--ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
..+--+++.+.++.+|+|.+... +..+....+.+. . .| +|.+.. -||||...+ ...+ --..+.++.+..
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vll-ankCd~e~~-a~~~-~~~~~d~f~ken 166 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLL-ANKCDQEKS-AKNE-ATRQFDNFKKEN 166 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheec-cchhccChH-hhhh-hHHHHHHHHhcc
Confidence 87777888999999999998733 222222221111 1 13 454443 599997754 2111 123677888888
Q ss_pred CCCCCCceEEEeccCcc
Q psy8869 162 EFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g 178 (593)
++. -++.+|++..
T Consensus 167 gf~----gwtets~Ken 179 (229)
T KOG4423|consen 167 GFE----GWTETSAKEN 179 (229)
T ss_pred Ccc----ceeeeccccc
Confidence 774 4889999986
No 436
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.57 E-value=9.7e-05 Score=75.27 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=41.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
+...++.++|-+|+|||||+|+|.+..... .....|+|-....+..+. .+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~---------------~s~~PG~Tk~~q~i~~~~---~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK---------------TSNRPGTTKGIQWIKLDD---GIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee---------------eCCCCceecceEEEEcCC---CeEEecCCC
Confidence 456889999999999999999998653311 111237777766665543 388999999
No 437
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.55 E-value=9.3e-05 Score=72.48 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=38.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
..++++|++|+|||||+|+|........+.-. ....+.+.+|.+...+.+ .+ ..++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~--------~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDIS--------SKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccccee--------ccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 36899999999999999999965332211000 001122335555555554 22 37999999544
No 438
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.55 E-value=7.6e-05 Score=73.45 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=37.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+++|++|+|||||+|+|.......-+.- .....+.+-+|.....+.+..++ .++||||...|
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eI--------S~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEI--------SEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhh--------cccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 678999999999999999985322111000 00011222344444444444333 58999996554
No 439
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00058 Score=72.23 Aligned_cols=127 Identities=18% Similarity=0.140 Sum_probs=67.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh-hhcCCccccccccCCCh---hh------hhcCceEEeeeeE-------EeeCCe
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAP---EE------KARGITINTAHIE-------YETKAR 75 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~~-------~~~~~~ 75 (593)
-.++++|+.|+||||++..|..... ..++... .....|... .| ...|+........ -...++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V-~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKV-ALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4899999999999999999986654 2221111 111123321 01 1122222111000 012357
Q ss_pred EEEEEecCChhhh-------HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 76 HYAHVDCPGHADY-------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 76 ~~~iiDtpGh~~~-------~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
.+.||||||.... +..++......+-..||++++.+. ....+.+.....+++..+| +||+|....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~~~vI--~TKlDet~~ 372 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPLDGLI--FTKLDETSS 372 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCCCEEE--Eeccccccc
Confidence 8999999996433 222222122345778999997643 2223333444455665444 699997643
No 440
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.51 E-value=0.0037 Score=70.12 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=125.7
Q ss_pred EecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe-ecCCCCHHHHHHHHHHHHHHHH
Q psy8869 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN-KADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 80 iDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN-K~Dl~~~~~~~~~~~~~~~~~l 158 (593)
-|+-|..+-+...+..+....+-+=|+.+.-|. -|...+.+|.+.+ -+|++.| +.+ . ..+...
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~--it~~Dv~lA~~~~--a~ii~Fnv~~~---~---------~~~~~a 612 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLGE--VTETDVEFASTTN--AEILAFNTNLA---P---------GAKKAA 612 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecCC--CCHHHHHHHHhcC--CEEEEeeCCCC---H---------HHHHHH
Confidence 689998888888888887777778888876554 4444555666654 2444444 222 1 122223
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeee
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~ 238 (593)
+.. .+.+...+-.. .-++++-+++...++ |.......-++.|..+|.++. |.++..+|.+|.
T Consensus 613 ~~~-----~v~i~~~~iIY-----------~lid~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~ 674 (742)
T CHL00189 613 RKL-----NIIIKEYQVIY-----------DLLEYIEALMEDLLD-PEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGK 674 (742)
T ss_pred HHc-----CCEEEEeChHH-----------HHHHHHHHHHhhccC-ceeeeeeceeEEeeEEEecCC-CEEEEEEEecCE
Confidence 332 45566555433 124445555555443 333333445677899999886 899999999999
Q ss_pred EecCCEEEEeecCCc-eEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEe
Q psy8869 239 VRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 239 l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
++.|..+++...+.. ...++.|++++..++.++..|+-||+.+.+ ..+++.||+|-
T Consensus 675 i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~--~~d~~~gD~ie 731 (742)
T CHL00189 675 ITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEE--FQLWQSGDKIH 731 (742)
T ss_pred EecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeC--CCCCCcCCEEE
Confidence 999999999865433 467899999999999999999999999985 46899999985
No 441
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.51 E-value=0.00054 Score=68.87 Aligned_cols=82 Identities=26% Similarity=0.265 Sum_probs=55.1
Q ss_pred hhcCCEEEEEEECCCCC-C-hhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q psy8869 96 AAQMDGAILVCSAADGP-M-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~-~-~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~ 173 (593)
+.++|.+++|+|+++.. . .....++..+...++|.++ ++||+|+.+..+... ........ ..+++++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iI-VlNK~DL~~~~~~~~-----~~~~~~~~-----g~~v~~v 144 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVI-VLTKADLLDDEEEEL-----ELVEALAL-----GYPVLAV 144 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEE-EEEHHHCCChHHHHH-----HHHHHHhC-----CCeEEEE
Confidence 56899999999998865 2 3334466667778889665 579999986522111 11111222 3689999
Q ss_pred ccCccccCCCCCCCcCcHHHHHHHh
Q psy8869 174 SAKLALEGDTGPLGEQSILSLSKAL 198 (593)
Q Consensus 174 Sa~~g~~~~~~w~~~~~~~~ll~~l 198 (593)
||+++ .++++|.+.|
T Consensus 145 SA~~g----------~gi~~L~~~L 159 (287)
T cd01854 145 SAKTG----------EGLDELREYL 159 (287)
T ss_pred ECCCC----------ccHHHHHhhh
Confidence 99997 5777777665
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.00041 Score=73.74 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=67.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---h------hhhcCceEEeee-------eEEeeCCeE
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---E------EKARGITINTAH-------IEYETKARH 76 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~------e~~~g~t~~~~~-------~~~~~~~~~ 76 (593)
-.++++|..|+||||++..|........+.........|... . -...|+...... ...+..++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 579999999999999999998765332211101111122210 0 112222221110 012334667
Q ss_pred EEEEecCChhhhHH---HHHHhh---hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 77 YAHVDCPGHADYIK---NMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 77 ~~iiDtpGh~~~~~---~~~~~~---~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
+.+|||+|...... .....+ ....-.+||+|++.+. ....+.+......++..+| +||+|...
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~~g~I--lTKlDet~ 405 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGLAGCI--LTKLDEAA 405 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCCCEEE--EeCCCCcc
Confidence 89999999332221 111111 1234488999998644 2223333444445666554 59999764
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00027 Score=78.70 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hh------hhcCceEEeeee-------EEeeCCeE
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTAHI-------EYETKARH 76 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~-------~~~~~~~~ 76 (593)
-.|+++|+.|+||||++..|........+.........|... .| ...|+......- --...+++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 578999999999999999998765322111110001112211 01 111222211000 00224668
Q ss_pred EEEEecCChhhh---HHHHHH---hhhcCCEEEEEEECCCCCChhhHHHHHHHH---HcCCCeEEEEEeecCCCCH
Q psy8869 77 YAHVDCPGHADY---IKNMIT---GAAQMDGAILVCSAADGPMPQTREHILLAR---QVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 77 ~~iiDtpGh~~~---~~~~~~---~~~~~d~~ilVvda~~g~~~qt~e~l~~~~---~l~ip~iiVvvNK~Dl~~~ 143 (593)
+.||||||.... ....+. .....+-.+||+|++.+.. ...+.+..-. ..++..+| +||+|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glI--lTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCI--ITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEE--EeccCCCCC
Confidence 999999993222 111111 1235678999999986321 1111221111 12566555 599997653
No 444
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.50 E-value=0.00089 Score=56.42 Aligned_cols=100 Identities=24% Similarity=0.254 Sum_probs=64.9
Q ss_pred EEEEec-CCCChHHHHHHHHHHhhhh-cCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 15 VGTIGH-VDHGKTTLTAAIATVLSKK-FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 15 I~i~G~-~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
|+++|. -|+||||+.-.|....... +.... .+|...+. +..+.++|||+..... .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~----l~d~d~~~-----------------~~D~IIiDtpp~~~~~--~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL----LVDLDLQF-----------------GDDYVVVDLGRSLDEV--S 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE----EEECCCCC-----------------CCCEEEEeCCCCcCHH--H
Confidence 455554 6799999998888765543 22111 11211110 1168999999865443 3
Q ss_pred HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCC---eEEEEEee
Q psy8869 93 ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP---YIVVFLNK 137 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip---~iiVvvNK 137 (593)
...+..+|.+++++++.......+.+.+..+...+.+ ++.+++|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 3456789999999998876666677777777777654 56666785
No 445
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.49 E-value=0.0043 Score=70.19 Aligned_cols=182 Identities=17% Similarity=0.250 Sum_probs=126.2
Q ss_pred EecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe-ecCCCCHHHHHHHHHHHHHHHH
Q psy8869 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN-KADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 80 iDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN-K~Dl~~~~~~~~~~~~~~~~~l 158 (593)
-|+-|..+-+...+..+..-+.-+=|+.+.-|.. |..-+.++...+ -+|+..| +.| . ..++..
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~i--t~~Dv~la~~~~--a~ii~Fnv~~~---~---------~~~~~a 657 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAI--TESDVTLAAASN--AIIIGFNVRPD---A---------KARKLA 657 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCCC--CHHHHHHHHhcC--CEEEEEcCCCC---H---------HHHHHH
Confidence 6888888888888888887788888888765543 444455555544 3444544 332 1 222333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeee
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGI 238 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~ 238 (593)
+.. .+.+...+-.. .-++++.+++...+++ .....---...|..+|.++..|.++..+|..|.
T Consensus 658 ~~~-----~v~i~~~~iIY-----------~l~d~~~~~~~~~l~~-~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~ 720 (787)
T PRK05306 658 EQE-----GVDIRYYSIIY-----------DLIDDVKAAMSGMLEP-EYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGK 720 (787)
T ss_pred HHc-----CCEEEEeChHH-----------HHHHHHHHHHhhccCc-hhheeeeeeEEEEEEEecCCCCeEEEEEEeeCE
Confidence 322 45566655443 1345555555554433 222222335678899999999999999999999
Q ss_pred EecCCEEEEeecCCc-eEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEe
Q psy8869 239 VRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 239 l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
++.|..+++...+.. ...++.|++++..++.++..|+-|++.+.+. .+++.||+|-
T Consensus 721 i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 721 IKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred EecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 999999999864332 4678999999999999999999999999865 6899999984
No 446
>KOG1491|consensus
Probab=97.49 E-value=0.00023 Score=70.18 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=56.8
Q ss_pred ccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe--------------
Q psy8869 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-------------- 71 (593)
Q Consensus 6 ~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-------------- 71 (593)
+.+.-.+++++|+|.+|+|||||+++|+......++..+ .||+......+
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF----------------~TIdPn~a~V~v~d~Rfd~l~~~Y~ 77 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF----------------CTIDPNEARVEVPDSRFDLLCPIYG 77 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc----------------ceeccccceeecCchHHHHHHHhcC
Confidence 345557889999999999999999999965432211111 23332221111
Q ss_pred eC---CeEEEEEecCCh-------hhhHHHHHHhhhcCCEEEEEEECCC
Q psy8869 72 TK---ARHYAHVDCPGH-------ADYIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 72 ~~---~~~~~iiDtpGh-------~~~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
.. .-.++++|.+|- +-.-...++-++.+|+++-||++..
T Consensus 78 ~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 78 PKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 01 224679999982 2223445566788999999999865
No 447
>PRK12289 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00012 Score=75.13 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++|+|.+|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999854
No 448
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.43 E-value=0.0016 Score=57.92 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=62.9
Q ss_pred EEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhh
Q psy8869 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGA 96 (593)
Q Consensus 17 i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~ 96 (593)
.-+..|+||||+.-.|.......+..... ..+|. .+-.+ .+.+.++|+|+... ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~--vd~D~------~~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLL--LDADL------GLANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEE--EECCC------CCCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 34567899999988887665543221111 01121 01011 16789999998543 2234567
Q ss_pred hcCCEEEEEEECCCCCChhhHHHHHHHHH-cCCCeEEEEEeecCCC
Q psy8869 97 AQMDGAILVCSAADGPMPQTREHILLARQ-VGVPYIVVFLNKADMV 141 (593)
Q Consensus 97 ~~~d~~ilVvda~~g~~~qt~e~l~~~~~-l~ip~iiVvvNK~Dl~ 141 (593)
..+|.+++|++++......+...+..+.. .+.+.+.+++|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 78999999999976544455555544433 2344565678999743
No 449
>KOG1487|consensus
Probab=97.41 E-value=0.00042 Score=65.65 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=56.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY---- 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~---- 88 (593)
.+++++|-+.+|||||+..|++.......+. +.|...-.....+++-.+.+.|.||-.+=
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasye----------------fttl~~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE----------------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccc----------------ceeEEEecceEeccccceeeecCcchhcccccC
Confidence 4899999999999999999986533222111 23443434445567788999999994322
Q ss_pred ---HHHHHHhhhcCCEEEEEEECCCC
Q psy8869 89 ---IKNMITGAAQMDGAILVCSAADG 111 (593)
Q Consensus 89 ---~~~~~~~~~~~d~~ilVvda~~g 111 (593)
-+..+.-++.|+.+++|+|+...
T Consensus 124 kgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCc
Confidence 23445556788999999998653
No 450
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.41 E-value=0.00052 Score=63.27 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=74.0
Q ss_pred EEEEe-cCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-hhhhcCceEE--ee--eeEEeeCCeEEEEEecCChhhh
Q psy8869 15 VGTIG-HVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-EEKARGITIN--TA--HIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 15 I~i~G-~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-~e~~~g~t~~--~~--~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
|++++ -.|+||||+.-.|.......+.........+.... +..-++.... .. ......+.+++.++|||+...-
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~ 81 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGD 81 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcH
Confidence 33444 46899999999998776654422211110000000 0000000000 00 0011225678999999986422
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
.......+..+|.+++|+.+.......+.+.+..+...+.+.+-+++|+.+..
T Consensus 82 ~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 82 EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 11111112578999999998877777888888999999999877778999853
No 451
>KOG2485|consensus
Probab=97.39 E-value=0.0004 Score=67.88 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG 84 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG 84 (593)
.+..+++-++|-+|.|||||+|++......+.+ .+. .-.+.|+|..++...--.+...+.++||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k-~a~---------vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK-AAR---------VGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc-cee---------ccCCCCceeeehhheEeccCCceEEecCCC
Confidence 457899999999999999999998765443331 111 112558888887643334555688999999
No 452
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.38 E-value=0.0038 Score=63.97 Aligned_cols=160 Identities=21% Similarity=0.320 Sum_probs=85.3
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccc-cccccCCChhhhhcCceEEeeeeEE--------ee---CC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK-SYDQIDAAPEEKARGITINTAHIEY--------ET---KA 74 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~d~~~~e~~~g~t~~~~~~~~--------~~---~~ 74 (593)
.+....+-|+++|+|-+||||++.++...+.--.-.... -....|.+++. ..|.|+.++.-.| .. -.
T Consensus 12 ~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~ 90 (492)
T PF09547_consen 12 ERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIK 90 (492)
T ss_pred HhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCce
Confidence 456778999999999999999999998654211100000 00012333332 2366766542221 11 24
Q ss_pred eEEEEEecCC--------h-----hhh------------HHHHHHhhh-----cCCEEEE-EEECCCCC------ChhhH
Q psy8869 75 RHYAHVDCPG--------H-----ADY------------IKNMITGAA-----QMDGAIL-VCSAADGP------MPQTR 117 (593)
Q Consensus 75 ~~~~iiDtpG--------h-----~~~------------~~~~~~~~~-----~~d~~il-Vvda~~g~------~~qt~ 117 (593)
.++-++||-| | .++ ....--|.+ .+-..|+ --|.+-+. .....
T Consensus 91 ~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe 170 (492)
T PF09547_consen 91 VKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE 170 (492)
T ss_pred EEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHH
Confidence 4667899988 1 111 122222222 1222333 33433221 13445
Q ss_pred HHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 118 EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 118 e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
+.+..++.+|.|++| ++|-.+=.+. +. ..+..++.+ .+ ++|++|++...-
T Consensus 171 rvI~ELk~igKPFvi-llNs~~P~s~-et-~~L~~eL~e---kY-----~vpVlpvnc~~l 220 (492)
T PF09547_consen 171 RVIEELKEIGKPFVI-LLNSTKPYSE-ET-QELAEELEE---KY-----DVPVLPVNCEQL 220 (492)
T ss_pred HHHHHHHHhCCCEEE-EEeCCCCCCH-HH-HHHHHHHHH---Hh-----CCcEEEeehHHc
Confidence 577889999999555 5798874443 22 223333332 22 589999998653
No 453
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.34 E-value=0.00023 Score=71.46 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=39.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..++++|++|+|||||+|.|++......+.- .....+.+.+|.+...+.+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v--------~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEI--------SEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccce--------eccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 5799999999999999999987543221100 0011122335555544444322 368999997654
No 454
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.34 E-value=0.00034 Score=63.49 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
...+++++|.+++|||||+++|.+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457889999999999999999974
No 455
>PRK13796 GTPase YqeH; Provisional
Probab=97.33 E-value=0.00022 Score=74.16 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=39.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
.++.++|.+|+|||||+|+|+...... . +........|+|.+...+.+.. ...++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~--~--------~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE--K--------DVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc--c--------ceEEecCCCCccceeEEEEcCC---CcEEEECCCc
Confidence 579999999999999999998643110 0 1111223457777765554432 2479999994
No 456
>PRK01889 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.0013 Score=68.22 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=57.3
Q ss_pred hhcCCEEEEEEECCCCCCh-hhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q psy8869 96 AAQMDGAILVCSAADGPMP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 174 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~S 174 (593)
+.+.|.+++|+++...... .....|..+...+++.+| ++||+|+.+..+ .....+..+ . ...+++++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piI-VLNK~DL~~~~~---~~~~~~~~~----~---~g~~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVI-VLTKADLCEDAE---EKIAEVEAL----A---PGVPVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEE-EEEChhcCCCHH---HHHHHHHHh----C---CCCcEEEEE
Confidence 4678999999999766665 444566777889999866 589999986421 111222222 1 246899999
Q ss_pred cCccccCCCCCCCcCcHHHHHHHh
Q psy8869 175 AKLALEGDTGPLGEQSILSLSKAL 198 (593)
Q Consensus 175 a~~g~~~~~~w~~~~~~~~ll~~l 198 (593)
++++ .++++|.++|
T Consensus 179 a~~g----------~gl~~L~~~L 192 (356)
T PRK01889 179 ALDG----------EGLDVLAAWL 192 (356)
T ss_pred CCCC----------ccHHHHHHHh
Confidence 9997 6778877765
No 457
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.32 E-value=0.00026 Score=73.51 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=39.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
.++.++|.+|+|||||+|+|++...... +........|.|.+...+.+ + ..+.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~----------~~~~~s~~pgtT~~~~~~~~--~-~~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK----------DVITTSPFPGTTLDLIEIPL--D-DGHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc----------ceeeecCCCCeEeeEEEEEe--C-CCCEEEECCCC
Confidence 5899999999999999999997532110 00111223577776654433 2 23679999994
No 458
>KOG0082|consensus
Probab=97.31 E-value=0.0018 Score=65.48 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=58.4
Q ss_pred cCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-----------hhhHHHHHHHHHc-
Q psy8869 59 RGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-----------PQTREHILLARQV- 126 (593)
Q Consensus 59 ~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-----------~qt~e~l~~~~~l- 126 (593)
|-.|..+....|+..+..+-++|.+||..=.+.|+.-.-.++++|+|++-++--+ .++...+..+...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 3345555667788888899999999999999999998889999999999876221 1122222222211
Q ss_pred ---CCCeEEEEEeecCCCC
Q psy8869 127 ---GVPYIVVFLNKADMVD 142 (593)
Q Consensus 127 ---~ip~iiVvvNK~Dl~~ 142 (593)
..+ +|+++||.|+..
T Consensus 259 ~F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 259 WFANTS-IILFLNKKDLFE 276 (354)
T ss_pred ccccCc-EEEEeecHHHHH
Confidence 344 677899999864
No 459
>PRK13796 GTPase YqeH; Provisional
Probab=97.30 E-value=0.0018 Score=67.44 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=60.8
Q ss_pred hhHHHHHHhhhcCC-EEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 87 DYIKNMITGAAQMD-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 87 ~~~~~~~~~~~~~d-~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
+|. .++..+...| .+++|||+.+.... ....+.... -+.| +++++||+|+.+.+...+.+...+..+.+..++.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 444 4666677666 89999999873322 222222211 2556 4556899999764222223333344455555542
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
..+++.+||+++ .++.+|++.|...
T Consensus 133 -~~~v~~vSAk~g----------~gI~eL~~~I~~~ 157 (365)
T PRK13796 133 -PVDVVLISAQKG----------HGIDELLEAIEKY 157 (365)
T ss_pred -cCcEEEEECCCC----------CCHHHHHHHHHHh
Confidence 235899999997 5789999988764
No 460
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.014 Score=61.58 Aligned_cols=104 Identities=16% Similarity=0.327 Sum_probs=80.1
Q ss_pred cHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCc-eEEEEEEEEecceec
Q psy8869 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFRKLL 268 (593)
Q Consensus 190 ~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~ 268 (593)
.++++..++...+. |.....---...+..+|.+++.|.++...|..|.++.|..+++...+.. ...+|.|++++++++
T Consensus 392 lied~~~~~~g~l~-p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv 470 (509)
T COG0532 392 LIEDVEAAMKGMLE-PEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDV 470 (509)
T ss_pred HHHHHHHHHHhccc-hhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccH
Confidence 34555555555443 3222222233567889999999999999999999999999998743221 357999999999999
Q ss_pred ceeeecceEEEEeccCCccCCccceEEe
Q psy8869 269 DQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 269 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
.++.+|+-|++.+.+ ..+++.||+|-
T Consensus 471 ~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 471 KEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred hHhccCcEEEEEecC--cccCCCCCEEE
Confidence 999999999999986 67899999884
No 461
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.22 E-value=0.003 Score=64.06 Aligned_cols=94 Identities=28% Similarity=0.320 Sum_probs=52.6
Q ss_pred CeEEEEEecCChhhh---HHH-----HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHH
Q psy8869 74 ARHYAHVDCPGHADY---IKN-----MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE 145 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~---~~~-----~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~ 145 (593)
.....+|.|-|-.+= ..+ -+......|.++-||||.+.........-....++..--+| ++||.|++++++
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~i-vlNK~Dlv~~~~ 162 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVI-VLNKTDLVDAEE 162 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEE-EEecccCCCHHH
Confidence 356789999993222 111 11222356889999999874432221111111122222355 479999999753
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q psy8869 146 LLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176 (593)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~ 176 (593)
.+ .++..+..++ ...+++.+|..
T Consensus 163 -l~----~l~~~l~~ln---p~A~i~~~~~~ 185 (323)
T COG0523 163 -LE----ALEARLRKLN---PRARIIETSYG 185 (323)
T ss_pred -HH----HHHHHHHHhC---CCCeEEEcccc
Confidence 33 3445555544 36789988873
No 462
>PRK12288 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.0033 Score=64.68 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=56.7
Q ss_pred hhcCCEEEEEEECCCCCCh-hhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q psy8869 96 AAQMDGAILVCSAADGPMP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 174 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~S 174 (593)
+.++|.+++|.+....... .....+..+...++|.+| ++||+|+.+.++. +.+. +..+.+..+ ..+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VI-VlNK~DL~~~~~~-~~~~-~~~~~y~~~-----g~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLI-VLNKIDLLDDEGR-AFVN-EQLDIYRNI-----GYRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-EEECccCCCcHHH-HHHH-HHHHHHHhC-----CCeEEEEe
Confidence 4578999999987654433 334445566777899766 5799999875321 1121 222222333 35899999
Q ss_pred cCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 175 AKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 175 a~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
|+++ .++++|++.|..
T Consensus 190 A~tg----------~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTG----------EGLEELEAALTG 205 (347)
T ss_pred CCCC----------cCHHHHHHHHhh
Confidence 9997 688899888753
No 463
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.0023 Score=63.64 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-------hhhhcCceEEeee-------eEE----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-------EEKARGITINTAH-------IEY---- 70 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-------~e~~~g~t~~~~~-------~~~---- 70 (593)
++...-|.++|-.|+||||-++.|.......+..-......+++.- +-..-|+.+-... ..|
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 3457889999999999999999999877665533222111111110 0111222221111 111
Q ss_pred --eeCCeEEEEEecCChhhhHHHHHHhh-------h-----cCCEEEEEEECCCCCC--hhhHHHHHHHHHcCCCeEEEE
Q psy8869 71 --ETKARHYAHVDCPGHADYIKNMITGA-------A-----QMDGAILVCSAADGPM--PQTREHILLARQVGVPYIVVF 134 (593)
Q Consensus 71 --~~~~~~~~iiDtpGh~~~~~~~~~~~-------~-----~~d~~ilVvda~~g~~--~qt~e~l~~~~~l~ip~iiVv 134 (593)
.-.++.+.|+||+|.-..-.+.+.-+ . .++-.++|+||+.|-. .|.+. +-...++.-+|
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~---F~eav~l~GiI-- 290 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI---FNEAVGLDGII-- 290 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH---HHHhcCCceEE--
Confidence 12467899999999433322222221 1 2344888889998643 23332 23345666444
Q ss_pred EeecCCC
Q psy8869 135 LNKADMV 141 (593)
Q Consensus 135 vNK~Dl~ 141 (593)
+||+|-.
T Consensus 291 lTKlDgt 297 (340)
T COG0552 291 LTKLDGT 297 (340)
T ss_pred EEecccC
Confidence 6999944
No 464
>KOG1999|consensus
Probab=97.13 E-value=0.0044 Score=68.82 Aligned_cols=129 Identities=19% Similarity=0.364 Sum_probs=95.0
Q ss_pred cccceeEEEeeccCcHHHHHHHHHHHHHhcC---CccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhh
Q psy8869 416 NNKKRWYVIHSYSGMEKNVQRKLIERINKLG---MQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESW 492 (593)
Q Consensus 416 ~~~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~---~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~ 492 (593)
..+++-|.++|+.|+|+.++-.|-+++-... -.-+.+.+|++-. +.|||||.........
T Consensus 162 vkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~plqI~Sv~a~D~-----------------lkGyIYIEA~KqshV~ 224 (1024)
T KOG1999|consen 162 VKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDTPLQIKSVFAKDH-----------------LKGYIYIEADKQSHVK 224 (1024)
T ss_pred CCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCCCceEEEEEeccc-----------------cceeEEEEechhHHHH
Confidence 3456778899999999987666644433322 1123334444433 7899999999777776
Q ss_pred hhhhccCCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEE
Q psy8869 493 HLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 572 (593)
Q Consensus 493 ~~i~~~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v 572 (593)
..|..+.+++.. +-.-||-.||-.+++.... ...+.+|.=|||..|-++|--+.|..|+..+++|.|
T Consensus 225 ~Ai~gv~niy~~------~~~lVPikEM~dvLkV~K~-------~v~L~~gswVRiKrG~YKgDLAqVd~Vd~~~n~v~l 291 (1024)
T KOG1999|consen 225 EAIEGVRNIYAN------RILLVPIKEMPDVLKVVKK-------VVQLSEGSWVRIKRGKYKGDLAQVDDVDENRNRVRL 291 (1024)
T ss_pred HHHhhhhhheec------cEEEEehhHhhhhhhhhhh-------hhccCccceEEEeccccccceeeeeeecccCCEEEE
Confidence 777776666652 5778999999988885542 225789999999999999999999999988888877
Q ss_pred EE
Q psy8869 573 SV 574 (593)
Q Consensus 573 ~v 574 (593)
.+
T Consensus 292 Kl 293 (1024)
T KOG1999|consen 292 KL 293 (1024)
T ss_pred EE
Confidence 65
No 465
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=97.09 E-value=0.0009 Score=52.99 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=32.3
Q ss_pred eeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
..+++||+|.|++|+++|.+|+|.+++..++++.|+
T Consensus 7 ~~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve 42 (83)
T CHL00141 7 MHVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVK 42 (83)
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence 368999999999999999999999999998777663
No 466
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=97.09 E-value=0.00095 Score=51.85 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=32.4
Q ss_pred eeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
..++.||+|.|++|+++|.+|+|.++++.++++.|+
T Consensus 5 ~~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve 40 (76)
T PRK12281 5 LKVKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVE 40 (76)
T ss_pred ccccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence 368999999999999999999999999988777765
No 467
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.07 E-value=0.0072 Score=61.50 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=48.6
Q ss_pred eEEEEEecCChhhhHHHH--H------HhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHH
Q psy8869 75 RHYAHVDCPGHADYIKNM--I------TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEEL 146 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~--~------~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~ 146 (593)
....+|.|.|-.+-...+ + ......|.++.|||+.+....... +-....+...-.+|| +||+|+++..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-~~~~~~Qi~~AD~Iv-lnK~Dl~~~~-- 166 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGYADRIL-LTKTDVAGEA-- 166 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-cHHHHHHHHhCCEEE-EeccccCCHH--
Confidence 467899999965432211 1 112245889999999864321111 111122233333554 7999999852
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEec
Q psy8869 147 LELVEIEIRELLNKYEFPGNDIPIIKGS 174 (593)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~vi~~S 174 (593)
+ ++.+.++.++ ...+++.++
T Consensus 167 -~----~~~~~l~~ln---p~a~i~~~~ 186 (318)
T PRK11537 167 -E----KLRERLARIN---ARAPVYTVV 186 (318)
T ss_pred -H----HHHHHHHHhC---CCCEEEEec
Confidence 2 3445555544 257788765
No 468
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.07 E-value=0.0041 Score=50.85 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=48.6
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH-HH
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN-MI 93 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~-~~ 93 (593)
+++.|..|+||||+...|...+.+.+. .. ..++ .+.++|+|+....... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~--------------------~v----~~~~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK--------------------RV----LLID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--------------------eE----EEEC----CEEEEeCCCCccchhhhhh
Confidence 678899999999999999877654221 11 0011 6899999996544331 24
Q ss_pred HhhhcCCEEEEEEECCCCCC
Q psy8869 94 TGAAQMDGAILVCSAADGPM 113 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~ 113 (593)
.....+|.++++++......
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 54 LALLAADLVIIVTTPEALAV 73 (99)
T ss_pred hhhhhCCEEEEecCCchhhH
Confidence 45568899999999876433
No 469
>PHA02518 ParA-like protein; Provisional
Probab=97.07 E-value=0.0093 Score=56.91 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChh---hHHHHHHHHHc--CCCeEEEEEeecCCC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ---TREHILLARQV--GVPYIVVFLNKADMV 141 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~q---t~e~l~~~~~l--~ip~iiVvvNK~Dl~ 141 (593)
+.+.+.|+||||... ..+...+..+|.+|+++.++.-.... +.+.+...... +.+.+.++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 456899999999643 33455677899999999987633332 33333332222 466665666877644
No 470
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.05 E-value=0.0053 Score=51.33 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=49.2
Q ss_pred EEEEe-cCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 15 VGTIG-HVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 15 I~i~G-~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
|++.| .-|+||||+.-.|.......+.. . ..+|..+. +.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~--v--l~~d~d~~-------------------~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR--V--LLIDLDPQ-------------------YDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc--E--EEEeCCCC-------------------CCEEEEeCcCCCCHH--HH
Confidence 56777 46899999999988766543211 1 11111111 568999999964332 22
Q ss_pred HhhhcCCEEEEEEECCCCCChhhH
Q psy8869 94 TGAAQMDGAILVCSAADGPMPQTR 117 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~~qt~ 117 (593)
..+..+|.+++++++.........
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~ 80 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLE 80 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHH
Confidence 556789999999998754333333
No 471
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.00 E-value=0.0055 Score=60.57 Aligned_cols=83 Identities=30% Similarity=0.366 Sum_probs=60.1
Q ss_pred cCCEEEEEEECCCCCC--hhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q psy8869 98 QMDGAILVCSAADGPM--PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (593)
Q Consensus 98 ~~d~~ilVvda~~g~~--~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa 175 (593)
+.|-+++|+++.++.+ .+....|-.+...|+..+|+ +||+|+.+.++... .+.......++ .+++.+|+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIv-lnK~DL~~~~~~~~---~~~~~~y~~~g-----y~v~~~s~ 149 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIV-LNKIDLLDDEEAAV---KELLREYEDIG-----YPVLFVSA 149 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEE-EEccccCcchHHHH---HHHHHHHHhCC-----eeEEEecC
Confidence 4788899999988654 45566788888899998875 79999998754432 24444555555 57999999
Q ss_pred CccccCCCCCCCcCcHHHHHHHhh
Q psy8869 176 KLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 176 ~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
+++ .++.+|.+.|.
T Consensus 150 ~~~----------~~~~~l~~~l~ 163 (301)
T COG1162 150 KNG----------DGLEELAELLA 163 (301)
T ss_pred cCc----------ccHHHHHHHhc
Confidence 987 56666666653
No 472
>PRK00098 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.00078 Score=68.09 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..++++|++|+|||||+|+|++.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 473
>KOG0447|consensus
Probab=96.89 E-value=0.021 Score=59.70 Aligned_cols=135 Identities=20% Similarity=0.282 Sum_probs=74.8
Q ss_pred ccCCCCeeEEEEEecCCCChHHHHHHHHHHhh-hhcCC------------------------ccccccc-----cCCChh
Q psy8869 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLS-KKFGG------------------------EAKSYDQ-----IDAAPE 55 (593)
Q Consensus 6 ~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~-~~~~~------------------------~~~~~~~-----~d~~~~ 55 (593)
|.....-.+|+++|.-.+|||+.+..+.++.- ..|+| +.+.+.. +..+.+
T Consensus 302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 33344456999999999999999998875421 11111 1111110 111112
Q ss_pred h--------hhcCceEEeeeeEEeeCC---eEEEEEecCCh-------------hhhHHHHHHhhhcCCEEEEEEECCCC
Q psy8869 56 E--------KARGITINTAHIEYETKA---RHYAHVDCPGH-------------ADYIKNMITGAAQMDGAILVCSAADG 111 (593)
Q Consensus 56 e--------~~~g~t~~~~~~~~~~~~---~~~~iiDtpGh-------------~~~~~~~~~~~~~~d~~ilVvda~~g 111 (593)
| ...|.|++...+.+...+ .+..++|.||. +......-.++.+++++||+|-- |
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--G 459 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--G 459 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--C
Confidence 2 224566665555554433 35789999993 22234444556789999999842 2
Q ss_pred CChhhHHH----HHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 112 PMPQTREH----ILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 112 ~~~qt~e~----l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
.....+.. ...+.-+|... |+|+||.|+.+.
T Consensus 460 SVDAERSnVTDLVsq~DP~GrRT-IfVLTKVDlAEk 494 (980)
T KOG0447|consen 460 SVDAERSIVTDLVSQMDPHGRRT-IFVLTKVDLAEK 494 (980)
T ss_pred CcchhhhhHHHHHHhcCCCCCee-EEEEeecchhhh
Confidence 22222221 22333356664 556899998754
No 474
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.86 E-value=0.011 Score=49.23 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=59.3
Q ss_pred EEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecce-----------ecceeeecceEEEEecc
Q psy8869 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK-----------LLDQGQAGDNIGLLLRG 283 (593)
Q Consensus 215 ~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~-----------~~~~a~aG~~v~l~l~~ 283 (593)
..|-++-..+|.|+++.--|.+|+|++||.+.++........+|+++...+. +++++.|..-+-+...+
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 4567788889999999999999999999999998654335678999876653 77888866666665554
Q ss_pred CCccCCccceEEe
Q psy8869 284 TKREDVERGQVLA 296 (593)
Q Consensus 284 ~~~~~i~~G~vl~ 296 (593)
++ ++..|+-+.
T Consensus 83 L~--~v~aG~~~~ 93 (110)
T cd03703 83 LE--KAIAGSPLL 93 (110)
T ss_pred Cc--cccCCCEEE
Confidence 43 335566553
No 475
>KOG0781|consensus
Probab=96.85 E-value=0.0091 Score=61.70 Aligned_cols=134 Identities=22% Similarity=0.150 Sum_probs=73.9
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCC-------cccccc-------------ccCCChhhhhcCceEEeee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGG-------EAKSYD-------------QIDAAPEEKARGITINTAH 67 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~-------~~~~~~-------------~~d~~~~e~~~g~t~~~~~ 67 (593)
+.+..+.|+++|-.|+||||-+..+..++..+.-. .++.-. .++..-+--+.|-.-+.+.
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~ 453 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAG 453 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHH
Confidence 45678999999999999999999998776554210 111000 0000000011111111100
Q ss_pred e------EEeeCCeEEEEEecCChhhhHHHHHHhh------hcCCEEEEEEECCCCCC--hhhHHHHHHHHHcC----CC
Q psy8869 68 I------EYETKARHYAHVDCPGHADYIKNMITGA------AQMDGAILVCSAADGPM--PQTREHILLARQVG----VP 129 (593)
Q Consensus 68 ~------~~~~~~~~~~iiDtpGh~~~~~~~~~~~------~~~d~~ilVvda~~g~~--~qt~e~l~~~~~l~----ip 129 (593)
. .-...+..+.++||+|........++.+ ..+|.+++|=-|--|.. .|.+..-..+.... +.
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id 533 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLID 533 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccc
Confidence 0 0123577899999999443333333322 37899999977765433 45554434444444 44
Q ss_pred eEEEEEeecCCCCH
Q psy8869 130 YIVVFLNKADMVDD 143 (593)
Q Consensus 130 ~iiVvvNK~Dl~~~ 143 (593)
.| +++|+|.++.
T Consensus 534 -~~-~ltk~dtv~d 545 (587)
T KOG0781|consen 534 -GI-LLTKFDTVDD 545 (587)
T ss_pred -eE-EEEeccchhh
Confidence 34 3699998875
No 476
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.84 E-value=0.0031 Score=59.35 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=48.8
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC--CCeEEEEEeecCCCCH
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDD 143 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~--ip~iiVvvNK~Dl~~~ 143 (593)
.+.+.|+|+|+..... +...+..+|.+|+++++..-....+...+..+..++ .+.+-+++||.+.-+.
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 3889999999865444 444567899999999987633445555666667666 3355667899997765
No 477
>PRK13695 putative NTPase; Provisional
Probab=96.83 E-value=0.0051 Score=56.91 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=59.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee------EE---ee-C--CeEEEEE
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI------EY---ET-K--ARHYAHV 80 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~------~~---~~-~--~~~~~ii 80 (593)
++|++.|.+|+|||||+..+.+.....+ .....+ ......+..+....+.... .+ .. + ...=.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G--~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEG--YKVGGF-YTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVV 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEE-EcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEE
Confidence 4799999999999999999876654311 111101 1110011111111111100 00 00 0 0000133
Q ss_pred ecCChhhhHHHHHHh-hhcCCEEEEEEE---CCCCCChhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 81 DCPGHADYIKNMITG-AAQMDGAILVCS---AADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 81 DtpGh~~~~~~~~~~-~~~~d~~ilVvd---a~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
|.-|-+.+....... +..+|. +++| +.+....+..+.+..+...+.+ +|+++||.
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~-~i~v~h~~ 136 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKP-VIATLHRR 136 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCe-EEEEECch
Confidence 444444444433322 335565 7889 5555556677777777777877 44456874
No 478
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=96.82 E-value=0.0026 Score=53.57 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=32.9
Q ss_pred ceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 537 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 537 ~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
...++.||.|.|++|+++|.+|.|.++++.++++.|+
T Consensus 43 ~~~IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~Ve 79 (120)
T PRK01191 43 SLPVRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVE 79 (120)
T ss_pred cceEeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEe
Confidence 3468999999999999999999999999998777664
No 479
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.78 E-value=0.0086 Score=57.58 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=50.8
Q ss_pred eEEEEEecCChhhhHHHH-HHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 75 RHYAHVDCPGHADYIKNM-ITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~-~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
+.+.++|||......... ...+. .+|.+++|+.+......++.+.+..+...+++..-+++|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 889999999753333322 22233 35899999999887788899999999999988767778998754
No 480
>KOG2743|consensus
Probab=96.72 E-value=0.014 Score=56.88 Aligned_cols=23 Identities=35% Similarity=0.176 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
---.+.|--|||||||++.++..
T Consensus 58 PvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 58 PVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred ceEEEEecccCChHHHHHHHHcc
Confidence 34467899999999999998743
No 481
>KOG4181|consensus
Probab=96.70 E-value=0.028 Score=55.75 Aligned_cols=142 Identities=19% Similarity=0.169 Sum_probs=75.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccc--cCCChhhhhcCceEEeeeeEEeeCCeEEE----------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQ--IDAAPEEKARGITINTAHIEYETKARHYA---------- 78 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~--~d~~~~e~~~g~t~~~~~~~~~~~~~~~~---------- 78 (593)
....|+++|.-|+|||||++.|.....+.. .+.|.+ ....-.|+....|+.+..+ ...+.+.
T Consensus 187 df~VIgvlG~QgsGKStllslLaans~~~d---yr~yvFRpvS~Ea~E~~~~qt~~Id~~---i~q~~i~fldtqpl~sf 260 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANSLDYD---YRQYVFRPVSPEADECIFAQTHKIDPN---IGQKSILFLDTQPLQSF 260 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccChHHh---hHHHhcccCChhhhhhhccceeccccc---cccceEEeeccccccch
Confidence 445789999999999999999875422211 111111 1223344444444443221 1122233
Q ss_pred -------EEecCC---------hhhh--HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc--------------
Q psy8869 79 -------HVDCPG---------HADY--IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV-------------- 126 (593)
Q Consensus 79 -------iiDtpG---------h~~~--~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l-------------- 126 (593)
+.|+|- |.+. +..|..-+..|+.+|+|+|.... .+....|+.+..+
T Consensus 261 si~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d--~~lir~L~~Ae~~rP~laifrh~~~~~ 338 (491)
T KOG4181|consen 261 SIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD--EQLIRLLNAAERLRPTLAIFRHCKGYV 338 (491)
T ss_pred HHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH--HHHHHHHHHHHhhCcccCccccccccc
Confidence 355543 1111 45555566789999999997542 2333344444332
Q ss_pred --CCCeEEEEEeecCCCCHH-HHHHHHHHHHHHHHhh
Q psy8869 127 --GVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNK 160 (593)
Q Consensus 127 --~ip~iiVvvNK~Dl~~~~-~~~~~~~~~~~~~l~~ 160 (593)
-.|+++++-||.-..+.. ...+.+...+..+++.
T Consensus 339 r~~~p~lVFv~~KA~riDf~pr~rerl~~~~~~l~~~ 375 (491)
T KOG4181|consen 339 RDHMPQLVFVRAKAHRIDFEPRQRERLDKKLAYLYGP 375 (491)
T ss_pred cccCcceEEEeccccccccChHHHHHHHHHHHHHhcc
Confidence 258888888997666531 2233344444444443
No 482
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=96.68 E-value=0.027 Score=44.95 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=52.4
Q ss_pred cEEEEEEEEeecCCCC-----CCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEE
Q psy8869 305 KHFTGEIYALSKDEGG-----RHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAI 379 (593)
Q Consensus 305 ~~f~a~i~~l~~~~~~-----~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vl 379 (593)
++++.+..+|+.--+. +-.||..|...++.+|+....|++.... +| .+++.|.+|+|.+.|+|+++
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k-------~d--~~~v~L~~Pvc~~~g~rvai 72 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK-------KD--MAEVELKKPVCAEKGERVAI 72 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE-------TT--EEEEEEEEEEE-STTSEEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE-------CC--EEEEEecCCeEcCcCCeeee
Confidence 3456666666643221 2368999999999999999999987544 34 36888999999999999998
Q ss_pred ee--CC--eEEEeeee
Q psy8869 380 RE--GV--QQFIQDNL 391 (593)
Q Consensus 380 r~--~~--~~i~~G~v 391 (593)
.. ++ +.||.|.|
T Consensus 73 SRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 73 SRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred ehhccCeEEEEEEEeC
Confidence 43 44 68888854
No 483
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.67 E-value=0.014 Score=47.72 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=57.6
Q ss_pred EEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecc-eecceeeecceEEEEeccCCccCCccce
Q psy8869 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (593)
Q Consensus 215 ~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~-~~~~~a~aG~~v~l~l~~~~~~~i~~G~ 293 (593)
..|-+....++.|.+++..|.+|+|++||.+..+. ...+|+++...+ .++++|.||+.|-+ .|++... ..|+
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~----~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~P-~aGd 75 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT----TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGVP-QAGD 75 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc----cccEEEEEECCCCCCCCEECCCCcEEE--cCCCCCC-CCCC
Confidence 35667777889999999999999999999998763 336899998664 78999999998877 3443222 4566
Q ss_pred EEe
Q psy8869 294 VLA 296 (593)
Q Consensus 294 vl~ 296 (593)
.+.
T Consensus 76 ~~~ 78 (95)
T cd03702 76 KFL 78 (95)
T ss_pred EEE
Confidence 554
No 484
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=96.66 E-value=0.0036 Score=52.53 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=31.2
Q ss_pred eeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
..++.||.|+|+.|+++|.+|.|.+|+.++.+|.|+
T Consensus 40 ~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Ve 75 (114)
T TIGR01080 40 LPVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVE 75 (114)
T ss_pred ceeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEc
Confidence 378999999999999999999999999777655543
No 485
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.62 E-value=0.0076 Score=72.22 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=57.3
Q ss_pred EEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhh--cCceEEeeeeEEeeCCeEEEEEecCC----h---
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA--RGITINTAHIEYETKARHYAHVDCPG----H--- 85 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~--~g~t~~~~~~~~~~~~~~~~iiDtpG----h--- 85 (593)
..++|.+|||||||+..- +. .+. ..+....+.. .|-|.++... |. .+-.+|||+| +
T Consensus 114 YlviG~~gsGKtt~l~~s-gl-------~~p---l~~~~~~~~~~~~~~t~~c~ww-f~---~~avliDtaG~y~~~~~~ 178 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GL-------KFP---LAERLGAAALRGVGGTRNCDWW-FT---DEAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CC-------CCc---CchhhccccccCCCCCcccceE-ec---CCEEEEcCCCccccCCCc
Confidence 589999999999999763 10 000 0010011111 1223222222 21 2356999999 1
Q ss_pred --------hhhHHHHHHh--hhcCCEEEEEEECCCCCC---h-------hhHHHHHHHH-Hc--CCCeEEEEEeecCCCC
Q psy8869 86 --------ADYIKNMITG--AAQMDGAILVCSAADGPM---P-------QTREHILLAR-QV--GVPYIVVFLNKADMVD 142 (593)
Q Consensus 86 --------~~~~~~~~~~--~~~~d~~ilVvda~~g~~---~-------qt~e~l~~~~-~l--~ip~iiVvvNK~Dl~~ 142 (593)
..|+...... -+..|++|++||+.+=.. . ..+..+..+. .+ .+|..+ ++||||+..
T Consensus 179 ~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYv-v~Tk~Dll~ 257 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYL-VLTKADLLA 257 (1169)
T ss_pred ccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEE-EEecchhhc
Confidence 1122222111 125699999999875221 1 1222232222 23 578665 579999874
No 486
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=96.58 E-value=0.0038 Score=52.01 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=32.0
Q ss_pred eecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 539 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 539 ~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
.+++||+|.|++|+++|.+|+|.++++.++++.|+
T Consensus 4 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Ve 38 (105)
T PRK00004 4 KIKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVE 38 (105)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEc
Confidence 57899999999999999999999999998877764
No 487
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.54 E-value=0.031 Score=57.49 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
-..+.|--|||||||+++|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999864
No 488
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.48 E-value=0.042 Score=52.23 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=50.6
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.+.+.|+|+|...... .....+..+|.+|+|+++.........+.+..+...+.+.+-+++||.|...
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 5678999999732211 1112335789999999998777777788888888899998877899999553
No 489
>KOG1424|consensus
Probab=96.47 E-value=0.0026 Score=66.29 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++.+.|+++|-+|+||||+||+|.+.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~ 337 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGR 337 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcC
Confidence 45799999999999999999999864
No 490
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=96.38 E-value=0.0055 Score=50.81 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred eecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 539 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 539 ~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
.++.||+|.|++|+.+|.+|+|.++++.++++.|+
T Consensus 3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Ve 37 (104)
T TIGR01079 3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVE 37 (104)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEC
Confidence 47899999999999999999999999988777774
No 491
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.36 E-value=0.049 Score=53.47 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=48.5
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
.+++.++|+|+.... .+...+..+|.+++|+++.......+...+..+...+++.+-+++|+.|..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 578999999985443 344456789999999998765555555566666777888766778999853
No 492
>KOG3859|consensus
Probab=96.35 E-value=0.033 Score=53.63 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=71.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH-- 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh-- 85 (593)
.-.+||..+|..|-|||||+..|.....+....+ +. ..++......+.+.-++ -.++++||.|.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~-----------H~-~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPST-----------HT-LPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCc-----------cC-CCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 3468999999999999999999986533221111 00 01122222222222222 24678999992
Q ss_pred -------------------hhhHHH------HHHhhh--cCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEee
Q psy8869 86 -------------------ADYIKN------MITGAA--QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNK 137 (593)
Q Consensus 86 -------------------~~~~~~------~~~~~~--~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK 137 (593)
+.|+.. ++..+. ..+++++.|+.+- +......-.+..+.. .+. +|=+|-|
T Consensus 108 QinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVN-IIPvIAK 185 (406)
T KOG3859|consen 108 QINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVN-IIPVIAK 185 (406)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhh-hHHHHHH
Confidence 222221 222222 4578888888764 444433333322222 223 3335689
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 138 ADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 138 ~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
.|..+..+. ...+..+..-|..
T Consensus 186 aDtisK~eL-~~FK~kimsEL~s 207 (406)
T KOG3859|consen 186 ADTISKEEL-KRFKIKIMSELVS 207 (406)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHh
Confidence 999887543 3344444444443
No 493
>KOG2484|consensus
Probab=96.25 E-value=0.0041 Score=62.88 Aligned_cols=61 Identities=26% Similarity=0.472 Sum_probs=0.0
Q ss_pred ccCC---CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEec
Q psy8869 6 FERT---KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDC 82 (593)
Q Consensus 6 ~~~~---k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDt 82 (593)
|.+. +..++++|+|-+|.||||++|+|.....=..+... |+|.......++.. +.|+|+
T Consensus 243 y~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p---------------GvT~smqeV~Ldk~---i~llDs 304 (435)
T KOG2484|consen 243 YCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP---------------GVTRSMQEVKLDKK---IRLLDS 304 (435)
T ss_pred cccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCc---------------cchhhhhheeccCC---ceeccC
Q ss_pred CC
Q psy8869 83 PG 84 (593)
Q Consensus 83 pG 84 (593)
||
T Consensus 305 Pg 306 (435)
T KOG2484|consen 305 PG 306 (435)
T ss_pred Cc
No 494
>KOG0099|consensus
Probab=96.19 E-value=0.027 Score=53.76 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=61.1
Q ss_pred cCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC--------ChhhHHHHHHHHHc----
Q psy8869 59 RGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP--------MPQTREHILLARQV---- 126 (593)
Q Consensus 59 ~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~--------~~qt~e~l~~~~~l---- 126 (593)
|-+|..+....|..+..++...|..|+.+-.+.|+.-....-++|+|+++++-- +....|.|.+.++.
T Consensus 186 RvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR 265 (379)
T KOG0099|consen 186 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR 265 (379)
T ss_pred hhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh
Confidence 444555555667778888999999999999999999999999999999987621 22334555544432
Q ss_pred --CCCeEEEEEeecCCCCH
Q psy8869 127 --GVPYIVVFLNKADMVDD 143 (593)
Q Consensus 127 --~ip~iiVvvNK~Dl~~~ 143 (593)
.---+|+++||-|+...
T Consensus 266 wL~tisvIlFLNKqDllae 284 (379)
T KOG0099|consen 266 WLRTISVILFLNKQDLLAE 284 (379)
T ss_pred HHhhhheeEEecHHHHHHH
Confidence 22236778999998754
No 495
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.19 E-value=0.024 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=22.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
....++|+|..|||||||+.+|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 344789999999999999999987643
No 496
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.17 E-value=0.014 Score=59.70 Aligned_cols=31 Identities=35% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhc
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF 40 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~ 40 (593)
...-++.++|++|||||||...|+......+
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG 101 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARG 101 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcC
Confidence 3556899999999999999999987765544
No 497
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.16 E-value=0.012 Score=54.25 Aligned_cols=45 Identities=22% Similarity=0.117 Sum_probs=31.6
Q ss_pred CEEEEEEECCCCCChhhHHHHHH--HHHcCCCeEEEEEeecCCCCHHH
Q psy8869 100 DGAILVCSAADGPMPQTREHILL--ARQVGVPYIVVFLNKADMVDDEE 145 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l~~--~~~l~ip~iiVvvNK~Dl~~~~~ 145 (593)
|++++|+||.........+.... +...+.|.+ +++||+|+++.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~I-lVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLV-LVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEE-EEEehhhcCCHHH
Confidence 78999999998766555544444 333466755 4689999998643
No 498
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.14 E-value=0.059 Score=52.23 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=41.6
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHH------HcCCCeEEEEEeecC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR------QVGVPYIVVFLNKAD 139 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~------~l~ip~iiVvvNK~D 139 (593)
+.+.+.||||||+... .+...+..+|.+|+.+.++.-....+.+.+..+. ..+++..+ ++|.++
T Consensus 82 ~~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~i-v~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAI-LRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEE-EEEecc
Confidence 4678999999997653 3445677899999988876533333333332222 23667554 579987
No 499
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.16 Score=45.40 Aligned_cols=32 Identities=34% Similarity=0.290 Sum_probs=27.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhc
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKF 40 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~ 40 (593)
.+..++|++.|.+|+|||||+.++...+..++
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999988776553
No 500
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.02 E-value=0.032 Score=61.45 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=62.4
Q ss_pred EEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCc-cCCccceEEec
Q psy8869 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKR-EDVERGQVLAK 297 (593)
Q Consensus 219 ~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 297 (593)
.+|+.+. +.++..+|..|+|+.|..|. .+. ...-.+|.||+++++++++|.+|+-|++.+.+..- .+++.||+|-.
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v~-r~~-~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPLM-KDD-GETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeEE-ecC-CEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6788665 78999999999999999863 322 22347899999999999999999999999987432 68999999964
Q ss_pred C
Q psy8869 298 P 298 (593)
Q Consensus 298 ~ 298 (593)
.
T Consensus 550 ~ 550 (590)
T TIGR00491 550 D 550 (590)
T ss_pred e
Confidence 3
Done!