Query psy8869
Match_columns 593
No_of_seqs 363 out of 4134
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:26:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2e_A Elongation factor TU (E 100.0 4.2E-64 1.4E-68 527.8 43.7 384 10-394 1-385 (397)
2 2c78_A Elongation factor TU-A; 100.0 8.2E-64 2.8E-68 527.6 42.2 388 4-393 3-402 (405)
3 3j2k_7 ERF3, eukaryotic polype 100.0 8.5E-62 2.9E-66 515.4 47.6 373 7-392 12-435 (439)
4 3avx_A Elongation factor TS, e 100.0 7.9E-62 2.7E-66 545.8 41.4 392 2-395 286-677 (1289)
5 1f60_A Elongation factor EEF1A 100.0 6.8E-61 2.3E-65 511.1 38.2 380 8-395 3-440 (458)
6 3p26_A Elongation factor 1 alp 100.0 8.5E-60 2.9E-64 507.2 40.9 378 9-393 30-474 (483)
7 1jny_A EF-1-alpha, elongation 100.0 1.1E-59 3.9E-64 499.6 39.0 375 9-394 3-427 (435)
8 3mca_A HBS1, elongation factor 100.0 7.1E-60 2.4E-64 516.3 27.8 374 7-392 172-589 (592)
9 3izq_1 HBS1P, elongation facto 100.0 4.4E-59 1.5E-63 511.2 34.2 378 8-392 163-607 (611)
10 1r5b_A Eukaryotic peptide chai 100.0 3.3E-59 1.1E-63 499.4 30.5 372 8-393 39-464 (467)
11 1zun_B Sulfate adenylate trans 100.0 8.9E-56 3.1E-60 469.9 39.8 370 9-392 21-433 (434)
12 2elf_A Protein translation elo 100.0 1.6E-54 5.5E-59 448.2 32.9 333 14-391 23-369 (370)
13 1wb1_A Translation elongation 100.0 2.4E-56 8E-61 478.3 19.4 361 7-396 14-395 (482)
14 1s0u_A EIF-2-gamma, translatio 100.0 3.1E-53 1.1E-57 447.1 38.2 350 8-392 4-407 (408)
15 1kk1_A EIF2gamma; initiation o 100.0 1.1E-52 3.6E-57 443.5 42.2 350 8-392 6-409 (410)
16 3sjy_A Translation initiation 100.0 1.1E-50 3.6E-55 427.0 38.5 361 8-391 4-401 (403)
17 2jvv_A Transcription antitermi 100.0 2.7E-38 9.2E-43 293.1 7.8 176 418-593 6-181 (181)
18 2ywe_A GTP-binding protein LEP 100.0 5.5E-35 1.9E-39 316.9 29.3 270 10-301 4-282 (600)
19 3vqt_A RF-3, peptide chain rel 100.0 1.6E-35 5.5E-40 320.5 24.9 275 10-301 29-402 (548)
20 3cb4_D GTP-binding protein LEP 100.0 3.5E-34 1.2E-38 311.4 29.1 270 10-301 2-280 (599)
21 1m1h_A Transcription antitermi 100.0 1E-33 3.5E-38 270.4 13.2 175 416-593 8-248 (248)
22 4fn5_A EF-G 1, elongation fact 100.0 1.2E-32 4E-37 308.5 23.8 274 10-300 11-405 (709)
23 3tr5_A RF-3, peptide chain rel 100.0 3.4E-32 1.2E-36 292.9 25.9 269 10-299 11-382 (528)
24 3j25_A Tetracycline resistance 100.0 6.4E-35 2.2E-39 322.4 1.4 269 12-299 2-330 (638)
25 2rdo_7 EF-G, elongation factor 100.0 5E-31 1.7E-35 293.9 32.4 272 9-299 7-401 (704)
26 2h5e_A Peptide chain release f 100.0 4.5E-32 1.6E-36 292.3 23.2 269 10-299 11-383 (529)
27 2oug_A Transcriptional activat 100.0 2.5E-36 8.6E-41 275.3 -9.2 161 419-593 2-162 (162)
28 1dar_A EF-G, elongation factor 100.0 1.9E-30 6.7E-35 288.8 32.5 281 1-300 1-394 (691)
29 3e1y_E Eukaryotic peptide chai 100.0 8E-32 2.7E-36 254.1 17.6 177 208-393 2-198 (204)
30 2dy1_A Elongation factor G; tr 100.0 4.2E-30 1.5E-34 285.2 27.3 269 10-300 7-367 (665)
31 3izy_P Translation initiation 100.0 6.3E-33 2.1E-37 297.0 3.4 255 12-302 4-262 (537)
32 1zo1_I IF2, translation initia 100.0 4.9E-32 1.7E-36 287.7 9.3 249 11-299 3-258 (501)
33 1g7s_A Translation initiation 100.0 3.3E-30 1.1E-34 280.6 22.1 259 11-300 4-329 (594)
34 2xex_A Elongation factor G; GT 100.0 3.3E-29 1.1E-33 279.1 29.6 272 9-299 7-393 (693)
35 3p8b_B Transcription antitermi 100.0 9.8E-29 3.3E-33 221.7 11.7 143 419-593 3-145 (152)
36 1n0u_A EF-2, elongation factor 100.0 2.7E-27 9.2E-32 268.8 24.4 288 8-299 15-473 (842)
37 2xhc_A Transcription antitermi 99.9 1.1E-24 3.7E-29 218.7 16.4 141 448-593 207-352 (352)
38 1nz8_A Transcription antitermi 99.9 2.2E-24 7.5E-29 184.8 13.0 109 419-528 2-116 (119)
39 4dhe_A Probable GTP-binding pr 99.8 7.9E-19 2.7E-23 168.8 16.0 172 9-207 26-214 (223)
40 3iev_A GTP-binding protein ERA 99.8 2.5E-18 8.6E-23 173.6 17.3 165 7-204 5-182 (308)
41 2lkc_A Translation initiation 99.8 3.6E-19 1.2E-23 164.6 9.7 161 9-202 5-169 (178)
42 2hjg_A GTP-binding protein ENG 99.8 1.8E-18 6.3E-23 183.3 15.0 151 10-180 173-335 (436)
43 2efe_B Small GTP-binding prote 99.8 1.8E-18 6.2E-23 160.3 12.9 165 7-204 7-175 (181)
44 2y8e_A RAB-protein 6, GH09086P 99.8 3.1E-18 1E-22 158.3 13.5 168 1-203 3-176 (179)
45 1wf3_A GTP-binding protein; GT 99.8 7.2E-18 2.4E-22 169.3 17.1 158 10-203 5-172 (301)
46 3t1o_A Gliding protein MGLA; G 99.8 1.3E-18 4.3E-23 163.7 10.9 174 1-202 3-190 (198)
47 2dyk_A GTP-binding protein; GT 99.8 5.2E-18 1.8E-22 153.9 14.6 153 13-203 2-161 (161)
48 2hxs_A RAB-26, RAS-related pro 99.8 4.7E-18 1.6E-22 157.1 13.8 162 9-204 3-173 (178)
49 1svi_A GTP-binding protein YSX 99.8 1.9E-17 6.5E-22 155.5 17.4 161 9-202 20-193 (195)
50 1zd9_A ADP-ribosylation factor 99.8 1E-17 3.5E-22 156.7 15.3 163 7-203 17-184 (188)
51 1r2q_A RAS-related protein RAB 99.8 4.6E-18 1.6E-22 155.6 12.1 162 9-203 3-168 (170)
52 1zj6_A ADP-ribosylation factor 99.7 8.8E-18 3E-22 156.9 13.9 163 9-206 13-180 (187)
53 2fg5_A RAB-22B, RAS-related pr 99.7 6.9E-18 2.4E-22 158.4 12.9 162 10-204 21-186 (192)
54 4dcu_A GTP-binding protein ENG 99.7 4.8E-18 1.7E-22 181.1 13.1 162 9-200 192-365 (456)
55 3pqc_A Probable GTP-binding pr 99.7 3.8E-17 1.3E-21 153.2 17.5 161 9-203 20-193 (195)
56 1z0j_A RAB-22, RAS-related pro 99.7 9.9E-18 3.4E-22 153.4 13.1 161 10-203 4-168 (170)
57 1ek0_A Protein (GTP-binding pr 99.7 5.2E-18 1.8E-22 155.2 11.1 163 11-203 2-168 (170)
58 3tkl_A RAS-related protein RAB 99.7 1.2E-17 3.9E-22 157.0 13.7 158 10-202 14-177 (196)
59 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.3E-17 8E-22 152.2 15.2 159 9-202 4-172 (177)
60 2g6b_A RAS-related protein RAB 99.7 1.6E-17 5.4E-22 153.8 13.6 162 8-203 6-173 (180)
61 1r8s_A ADP-ribosylation factor 99.7 3.2E-17 1.1E-21 149.2 15.3 156 13-203 1-161 (164)
62 1upt_A ARL1, ADP-ribosylation 99.7 2.9E-17 9.9E-22 150.5 14.9 159 10-203 5-168 (171)
63 4bas_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 157.3 12.7 163 7-203 12-188 (199)
64 2ew1_A RAS-related protein RAB 99.7 2.5E-17 8.6E-22 155.8 14.2 160 8-202 22-187 (201)
65 1fzq_A ADP-ribosylation factor 99.7 3.1E-17 1.1E-21 152.4 14.6 160 9-203 13-177 (181)
66 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.4E-17 8.2E-22 153.3 13.9 166 10-205 3-181 (186)
67 2a5j_A RAS-related protein RAB 99.7 1.5E-17 5.2E-22 155.8 12.3 163 7-202 16-182 (191)
68 2h57_A ADP-ribosylation factor 99.7 2.2E-17 7.7E-22 154.5 13.2 163 8-203 17-186 (190)
69 4gzl_A RAS-related C3 botulinu 99.7 2.7E-17 9.1E-22 156.0 13.8 163 7-201 25-202 (204)
70 1z0f_A RAB14, member RAS oncog 99.7 3.1E-17 1.1E-21 151.5 13.8 161 9-202 12-176 (179)
71 2il1_A RAB12; G-protein, GDP, 99.7 1.4E-17 4.7E-22 156.4 11.5 160 9-202 23-188 (192)
72 3bc1_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 152.8 14.7 159 9-202 8-183 (195)
73 3dz8_A RAS-related protein RAB 99.7 1.7E-17 5.8E-22 155.5 12.0 160 10-202 21-184 (191)
74 2oil_A CATX-8, RAS-related pro 99.7 1.3E-17 4.3E-22 156.6 11.1 161 8-201 21-185 (193)
75 3i8s_A Ferrous iron transport 99.7 5E-18 1.7E-22 168.5 8.7 156 11-204 2-169 (274)
76 2h17_A ADP-ribosylation factor 99.7 2.4E-17 8.1E-22 153.1 12.7 158 8-200 17-179 (181)
77 2gf9_A RAS-related protein RAB 99.7 1.3E-17 4.5E-22 155.9 10.9 160 10-202 20-183 (189)
78 1m2o_B GTP-binding protein SAR 99.7 2.7E-17 9.4E-22 154.1 13.0 159 8-201 19-189 (190)
79 3tw8_B RAS-related protein RAB 99.7 1.6E-17 5.3E-22 153.8 11.2 159 9-202 6-169 (181)
80 3clv_A RAB5 protein, putative; 99.7 4.9E-17 1.7E-21 153.6 14.8 108 75-202 93-202 (208)
81 2nzj_A GTP-binding protein REM 99.7 4.3E-17 1.5E-21 150.0 13.9 159 10-202 2-167 (175)
82 1kao_A RAP2A; GTP-binding prot 99.7 3.3E-17 1.1E-21 149.3 12.7 158 11-202 2-164 (167)
83 2p5s_A RAS and EF-hand domain 99.7 2.6E-17 9E-22 155.3 12.5 164 9-202 25-195 (199)
84 1ksh_A ARF-like protein 2; sma 99.7 4.3E-17 1.5E-21 151.9 13.7 159 10-203 16-179 (186)
85 2hup_A RAS-related protein RAB 99.7 6E-17 2.1E-21 153.2 14.9 160 10-203 27-192 (201)
86 1ega_A Protein (GTP-binding pr 99.7 4.1E-17 1.4E-21 164.1 14.0 159 11-204 7-175 (301)
87 1c1y_A RAS-related protein RAP 99.7 4.2E-17 1.4E-21 148.8 12.9 159 11-202 2-165 (167)
88 2erx_A GTP-binding protein DI- 99.7 6.2E-17 2.1E-21 148.3 14.0 160 11-204 2-167 (172)
89 2fu5_C RAS-related protein RAB 99.7 1.9E-17 6.7E-22 153.7 10.7 158 10-202 6-169 (183)
90 1zbd_A Rabphilin-3A; G protein 99.7 6.8E-17 2.3E-21 152.8 14.5 159 10-201 6-168 (203)
91 1ky3_A GTP-binding protein YPT 99.7 4E-17 1.4E-21 151.1 12.7 161 9-202 5-176 (182)
92 1z08_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 150.6 11.3 160 10-202 4-167 (170)
93 1f6b_A SAR1; gtpases, N-termin 99.7 3.6E-17 1.2E-21 154.4 12.4 160 8-202 21-197 (198)
94 3llu_A RAS-related GTP-binding 99.7 1.2E-16 4.2E-21 150.3 16.1 165 7-201 15-194 (196)
95 1z2a_A RAS-related protein RAB 99.7 2.2E-17 7.4E-22 150.8 10.6 160 10-202 3-165 (168)
96 2bme_A RAB4A, RAS-related prot 99.7 6.6E-17 2.3E-21 150.5 13.9 158 10-202 8-171 (186)
97 3kkq_A RAS-related protein M-R 99.7 4.2E-17 1.5E-21 151.4 12.5 159 8-202 14-180 (183)
98 1u8z_A RAS-related protein RAL 99.7 7.3E-17 2.5E-21 147.1 13.8 158 11-202 3-165 (168)
99 2b6h_A ADP-ribosylation factor 99.7 5.4E-17 1.8E-21 152.3 13.1 161 8-203 25-190 (192)
100 2j1l_A RHO-related GTP-binding 99.7 1.1E-16 3.7E-21 153.0 15.4 163 8-202 30-207 (214)
101 2fh5_B SR-beta, signal recogni 99.7 9.7E-17 3.3E-21 153.2 14.9 167 9-201 4-213 (214)
102 3qq5_A Small GTP-binding prote 99.7 5.1E-18 1.8E-22 177.2 6.4 159 9-205 31-197 (423)
103 1g16_A RAS-related protein SEC 99.7 3.8E-17 1.3E-21 149.5 11.5 156 11-202 2-163 (170)
104 2atx_A Small GTP binding prote 99.7 6.4E-17 2.2E-21 151.9 13.3 162 9-202 15-191 (194)
105 1vg8_A RAS-related protein RAB 99.7 3E-17 1E-21 155.7 11.1 159 9-202 5-173 (207)
106 3iby_A Ferrous iron transport 99.7 1.2E-17 4.1E-22 163.8 8.6 151 13-201 2-164 (256)
107 3cpj_B GTP-binding protein YPT 99.7 1.9E-17 6.5E-22 159.3 9.7 169 1-204 1-176 (223)
108 3q72_A GTP-binding protein RAD 99.7 4.5E-17 1.6E-21 148.5 11.6 157 11-202 1-162 (166)
109 2fv8_A H6, RHO-related GTP-bin 99.7 1.2E-16 4E-21 151.9 14.2 165 7-203 20-199 (207)
110 2qu8_A Putative nucleolar GTP- 99.7 1.8E-16 6.1E-21 153.0 15.7 163 10-202 27-203 (228)
111 1z06_A RAS-related protein RAB 99.7 8.9E-17 3E-21 150.3 13.0 164 9-202 17-186 (189)
112 4dsu_A GTPase KRAS, isoform 2B 99.7 9.5E-17 3.3E-21 149.6 12.9 156 10-202 2-164 (189)
113 2gf0_A GTP-binding protein DI- 99.7 2.2E-16 7.6E-21 148.6 15.6 161 9-204 5-171 (199)
114 2fn4_A P23, RAS-related protei 99.7 3.6E-17 1.2E-21 151.3 9.8 159 8-202 5-170 (181)
115 4dkx_A RAS-related protein RAB 99.7 1.1E-16 3.7E-21 152.8 13.3 164 5-203 6-175 (216)
116 2gco_A H9, RHO-related GTP-bin 99.7 1.2E-16 4.2E-21 151.0 13.6 164 8-201 21-197 (201)
117 2o52_A RAS-related protein RAB 99.7 5.2E-17 1.8E-21 153.5 10.9 158 10-202 23-186 (200)
118 1moz_A ARL1, ADP-ribosylation 99.7 3.3E-17 1.1E-21 152.1 9.4 158 10-202 16-178 (183)
119 2a9k_A RAS-related protein RAL 99.7 1.2E-16 4.3E-21 148.5 13.3 159 8-202 14-179 (187)
120 3a1s_A Iron(II) transport prot 99.7 6.9E-17 2.3E-21 158.7 11.9 155 10-202 3-165 (258)
121 2bov_A RAla, RAS-related prote 99.7 2.1E-16 7.3E-21 149.6 14.8 159 8-202 10-175 (206)
122 3t5g_A GTP-binding protein RHE 99.7 3.4E-17 1.2E-21 151.8 8.9 158 10-203 4-168 (181)
123 1x3s_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 150.0 12.5 160 10-203 13-177 (195)
124 3q85_A GTP-binding protein REM 99.7 1E-16 3.5E-21 146.7 11.9 158 12-202 2-165 (169)
125 3oes_A GTPase rhebl1; small GT 99.7 3E-17 1E-21 155.2 8.6 161 9-203 21-186 (201)
126 3k53_A Ferrous iron transport 99.7 3.5E-17 1.2E-21 162.4 9.4 154 11-202 2-164 (271)
127 2ce2_X GTPase HRAS; signaling 99.7 2.3E-16 7.9E-21 143.3 14.1 157 11-202 2-163 (166)
128 3gj0_A GTP-binding nuclear pro 99.7 2E-17 6.7E-22 159.0 7.2 164 4-202 7-173 (221)
129 2bcg_Y Protein YP2, GTP-bindin 99.7 6.6E-17 2.3E-21 153.4 10.8 158 10-202 6-169 (206)
130 3bwd_D RAC-like GTP-binding pr 99.7 6.5E-17 2.2E-21 149.9 10.5 164 10-203 6-180 (182)
131 2x77_A ADP-ribosylation factor 99.7 3E-17 1E-21 153.5 8.1 159 10-203 20-183 (189)
132 2f7s_A C25KG, RAS-related prot 99.7 3.5E-16 1.2E-20 149.6 15.8 158 10-202 23-197 (217)
133 3cph_A RAS-related protein SEC 99.7 9.4E-17 3.2E-21 153.0 11.6 157 10-202 18-180 (213)
134 3lpe_A Putative transcription 99.7 1E-16 3.5E-21 129.5 9.6 84 416-524 7-90 (92)
135 3reg_A RHO-like small GTPase; 99.7 6.8E-17 2.3E-21 151.7 9.7 163 7-202 18-186 (194)
136 2j0v_A RAC-like GTP-binding pr 99.7 9.9E-17 3.4E-21 152.9 10.8 166 9-204 6-180 (212)
137 1mky_A Probable GTP-binding pr 99.7 4.3E-16 1.5E-20 165.2 16.7 153 14-203 3-165 (439)
138 4djt_A GTP-binding nuclear pro 99.7 2.9E-17 9.9E-22 157.3 6.9 163 7-202 6-173 (218)
139 2wji_A Ferrous iron transport 99.7 2.9E-16 9.8E-21 143.5 13.0 154 11-202 2-163 (165)
140 3con_A GTPase NRAS; structural 99.7 4.3E-16 1.5E-20 145.6 13.9 158 8-202 17-181 (190)
141 3r7w_A Gtpase1, GTP-binding pr 99.7 1.7E-15 5.9E-20 152.8 19.1 162 11-201 2-178 (307)
142 2gj8_A MNME, tRNA modification 99.7 2.3E-16 7.7E-21 145.3 11.1 152 11-203 3-165 (172)
143 2hjg_A GTP-binding protein ENG 99.7 1.7E-16 5.7E-21 168.2 11.3 153 13-203 4-164 (436)
144 2yc2_C IFT27, small RAB-relate 99.7 1.1E-16 3.8E-21 151.7 8.9 159 10-201 18-189 (208)
145 3gee_A MNME, tRNA modification 99.7 4.2E-16 1.4E-20 165.6 13.7 156 11-203 232-397 (476)
146 3o47_A ADP-ribosylation factor 99.7 2E-16 6.7E-21 161.2 10.7 159 10-203 163-326 (329)
147 1m7b_A RND3/RHOE small GTP-bin 99.7 6.2E-16 2.1E-20 143.9 13.0 163 9-201 4-180 (184)
148 2xtp_A GTPase IMAP family memb 99.7 3.2E-16 1.1E-20 154.5 11.7 166 9-203 19-207 (260)
149 1mky_A Probable GTP-binding pr 99.7 1.1E-15 3.6E-20 162.2 16.4 162 10-201 178-352 (439)
150 2q3h_A RAS homolog gene family 99.7 1E-15 3.5E-20 144.5 14.3 163 8-202 16-193 (201)
151 2wjg_A FEOB, ferrous iron tran 99.6 7E-16 2.4E-20 143.8 11.8 157 10-204 5-169 (188)
152 3cbq_A GTP-binding protein REM 99.6 8.2E-16 2.8E-20 144.6 12.3 162 9-203 20-187 (195)
153 3b1v_A Ferrous iron uptake tra 99.6 3.7E-16 1.3E-20 154.3 10.0 153 12-203 3-163 (272)
154 3q3j_B RHO-related GTP-binding 99.6 6.6E-16 2.3E-20 147.5 11.2 164 9-203 24-202 (214)
155 3ihw_A Centg3; RAS, centaurin, 99.6 9.2E-16 3.1E-20 142.9 11.7 156 7-201 15-177 (184)
156 2atv_A RERG, RAS-like estrogen 99.6 1.3E-15 4.3E-20 143.3 12.8 159 9-202 25-189 (196)
157 3c5c_A RAS-like protein 12; GD 99.6 7.4E-16 2.5E-20 143.8 10.9 161 7-202 16-184 (187)
158 2cxx_A Probable GTP-binding pr 99.6 2.3E-15 7.9E-20 140.4 13.5 154 13-203 2-183 (190)
159 3t5d_A Septin-7; GTP-binding p 99.6 2.1E-15 7.1E-20 149.8 13.8 168 10-203 6-203 (274)
160 1gwn_A RHO-related GTP-binding 99.6 2.2E-15 7.4E-20 142.9 12.8 162 9-201 25-201 (205)
161 2zej_A Dardarin, leucine-rich 99.6 2.1E-15 7.3E-20 140.3 11.9 167 12-203 2-177 (184)
162 3l0i_B RAS-related protein RAB 99.6 1.8E-17 6.3E-22 156.4 -2.3 161 10-203 31-195 (199)
163 4dcu_A GTP-binding protein ENG 99.6 1.5E-15 5.1E-20 161.8 12.1 155 11-203 22-184 (456)
164 3lxw_A GTPase IMAP family memb 99.6 3.4E-15 1.2E-19 145.7 13.6 169 9-203 18-207 (247)
165 1xzp_A Probable tRNA modificat 99.6 1.7E-15 5.7E-20 161.1 11.7 152 12-202 243-403 (482)
166 2iwr_A Centaurin gamma 1; ANK 99.6 1.3E-14 4.4E-19 133.9 16.2 157 9-202 4-167 (178)
167 3lvq_E ARF-GAP with SH3 domain 99.6 3.7E-15 1.3E-19 160.9 13.6 160 9-203 319-483 (497)
168 3th5_A RAS-related C3 botulinu 99.4 7.4E-17 2.5E-21 152.8 0.0 161 8-200 26-201 (204)
169 3geh_A MNME, tRNA modification 99.6 3.9E-15 1.3E-19 157.6 11.7 154 11-204 223-384 (462)
170 2wkq_A NPH1-1, RAS-related C3 99.6 8E-15 2.7E-19 149.6 13.2 161 10-202 153-328 (332)
171 2g3y_A GTP-binding protein GEM 99.6 1.9E-14 6.5E-19 136.7 13.0 160 9-202 34-201 (211)
172 1nrj_B SR-beta, signal recogni 99.6 8.4E-15 2.9E-19 140.1 10.1 147 8-180 8-170 (218)
173 3lxx_A GTPase IMAP family memb 99.6 3.7E-14 1.3E-18 137.8 14.5 168 9-202 26-212 (239)
174 2qtf_A Protein HFLX, GTP-bindi 99.6 3.5E-14 1.2E-18 145.9 15.0 160 14-205 181-355 (364)
175 1lnz_A SPO0B-associated GTP-bi 99.5 4.1E-15 1.4E-19 151.3 7.2 155 13-204 159-330 (342)
176 1pui_A ENGB, probable GTP-bind 99.5 1.8E-13 6.3E-18 129.8 15.4 163 9-203 23-198 (210)
177 2cjw_A GTP-binding protein GEM 99.5 7.8E-14 2.7E-18 130.6 12.3 159 10-202 4-170 (192)
178 2e87_A Hypothetical protein PH 99.5 1.7E-13 6E-18 141.1 15.3 156 10-202 165-334 (357)
179 3r7w_B Gtpase2, GTP-binding pr 99.5 7.4E-14 2.5E-18 139.4 12.0 160 14-202 1-172 (331)
180 3dpu_A RAB family protein; roc 99.5 2.2E-14 7.4E-19 156.1 7.9 161 9-204 38-208 (535)
181 2f9l_A RAB11B, member RAS onco 99.5 1.7E-13 5.7E-18 129.1 12.2 157 11-202 4-166 (199)
182 3def_A T7I23.11 protein; chlor 99.5 2.3E-13 7.8E-18 134.0 12.3 118 10-142 34-165 (262)
183 2j69_A Bacterial dynamin-like 99.5 2.5E-13 8.7E-18 151.2 13.9 127 75-202 174-323 (695)
184 2aka_B Dynamin-1; fusion prote 99.4 2.1E-13 7.2E-18 137.0 10.6 100 74-179 124-238 (299)
185 1h65_A Chloroplast outer envel 99.4 9.6E-13 3.3E-17 130.2 15.0 179 10-204 37-245 (270)
186 2qag_A Septin-2, protein NEDD5 99.4 1.9E-13 6.5E-18 140.6 10.0 173 11-205 36-238 (361)
187 3p32_A Probable GTPase RV1496/ 99.4 2.9E-13 9.9E-18 139.3 10.7 174 9-203 76-283 (355)
188 1jwy_B Dynamin A GTPase domain 99.4 2E-13 7E-18 138.3 8.6 119 73-204 129-262 (315)
189 1oix_A RAS-related protein RAB 99.4 5.9E-13 2E-17 124.5 10.1 157 10-201 27-189 (191)
190 1nz9_A Transcription antitermi 99.4 5.4E-13 1.8E-17 97.9 7.6 55 539-593 4-58 (58)
191 2p67_A LAO/AO transport system 99.4 1.5E-12 5.3E-17 133.0 13.6 174 10-202 54-259 (341)
192 2ged_A SR-beta, signal recogni 99.4 3.2E-13 1.1E-17 126.2 7.7 128 9-157 45-188 (193)
193 3c5h_A Glucocorticoid receptor 99.4 8.5E-13 2.9E-17 129.4 10.6 84 98-201 162-252 (255)
194 1wxq_A GTP-binding protein; st 99.3 1.6E-12 5.4E-17 135.0 8.2 83 13-111 1-114 (397)
195 2www_A Methylmalonic aciduria 99.3 1.2E-11 4E-16 126.7 13.4 174 10-202 72-277 (349)
196 2qpt_A EH domain-containing pr 99.3 1.2E-11 4.2E-16 133.9 12.2 70 75-145 154-235 (550)
197 2wsm_A Hydrogenase expression/ 99.3 4.1E-12 1.4E-16 121.5 7.0 166 10-203 28-213 (221)
198 1udx_A The GTP-binding protein 99.2 3.5E-11 1.2E-15 125.2 12.6 154 13-203 158-324 (416)
199 2x2e_A Dynamin-1; nitration, h 99.2 5.5E-12 1.9E-16 129.7 5.3 99 74-180 129-244 (353)
200 1yrb_A ATP(GTP)binding protein 99.2 4.7E-11 1.6E-15 117.3 11.2 114 74-203 108-256 (262)
201 3t34_A Dynamin-related protein 99.2 3.5E-11 1.2E-15 124.0 7.6 97 74-179 135-246 (360)
202 2e6z_A Transcription elongatio 99.1 3.7E-11 1.3E-15 87.7 5.2 54 538-593 6-59 (59)
203 3zvr_A Dynamin-1; hydrolase, D 99.1 3.4E-11 1.2E-15 133.1 6.7 99 73-179 148-263 (772)
204 2qm8_A GTPase/ATPase; G protei 99.1 2.7E-10 9.3E-15 115.8 11.2 174 10-202 53-259 (337)
205 2qag_C Septin-7; cell cycle, c 99.1 1.2E-09 3.9E-14 113.8 13.7 152 11-178 30-211 (418)
206 1cip_A Protein (guanine nucleo 99.0 3.7E-10 1.3E-14 115.1 9.5 130 61-201 179-341 (353)
207 1xe1_A Hypothetical protein PF 99.0 3.1E-09 1.1E-13 87.2 12.7 81 210-296 32-112 (116)
208 2qnr_A Septin-2, protein NEDD5 99.0 1.5E-09 5E-14 108.7 11.6 152 11-178 17-199 (301)
209 4a9a_A Ribosome-interacting GT 99.0 3.5E-10 1.2E-14 115.7 7.0 113 10-141 70-195 (376)
210 1jal_A YCHF protein; nucleotid 99.0 1.6E-09 5.3E-14 110.2 11.1 82 13-110 3-108 (363)
211 2j37_W Signal recognition part 98.9 2.5E-09 8.4E-14 113.7 11.3 131 10-143 99-255 (504)
212 4fid_A G protein alpha subunit 98.9 1E-08 3.4E-13 103.3 12.3 83 59-142 145-242 (340)
213 2dby_A GTP-binding protein; GD 98.9 1.2E-08 4.3E-13 104.3 13.2 89 13-110 2-111 (368)
214 3ohm_A Guanine nucleotide-bind 98.8 1.1E-08 3.9E-13 102.6 11.4 131 60-201 152-315 (327)
215 2hf9_A Probable hydrogenase ni 98.8 1.1E-08 3.9E-13 97.7 9.7 168 10-202 36-222 (226)
216 3sop_A Neuronal-specific septi 98.7 1.3E-07 4.5E-12 92.8 13.7 144 12-163 2-174 (270)
217 2qag_B Septin-6, protein NEDD5 98.7 8.1E-08 2.8E-12 99.4 11.7 145 11-175 41-217 (427)
218 1tq4_A IIGP1, interferon-induc 98.6 1.7E-06 5.8E-11 89.6 17.5 167 12-204 69-253 (413)
219 1zcb_A G alpha I/13; GTP-bindi 98.6 7.3E-08 2.5E-12 98.5 7.0 129 62-201 188-350 (362)
220 2ohf_A Protein OLA1, GTP-bindi 98.5 1E-07 3.5E-12 97.9 6.9 85 10-110 20-128 (396)
221 3dm5_A SRP54, signal recogniti 98.4 1.8E-06 6.1E-11 89.8 14.0 128 11-143 99-254 (443)
222 1u0l_A Probable GTPase ENGC; p 98.4 5.1E-07 1.7E-11 90.2 7.4 103 76-199 64-168 (301)
223 3kl4_A SRP54, signal recogniti 98.3 2.8E-06 9.6E-11 88.4 12.5 127 11-143 96-253 (433)
224 2v3c_C SRP54, signal recogniti 98.3 2.4E-06 8.2E-11 89.3 11.7 131 10-143 97-253 (432)
225 3ec1_A YQEH GTPase; atnos1, at 98.3 5E-08 1.7E-12 100.4 -1.3 117 13-143 163-289 (369)
226 1azs_C GS-alpha; complex (lyas 98.3 2.2E-06 7.6E-11 88.3 10.3 80 62-142 204-298 (402)
227 1j8m_F SRP54, signal recogniti 98.3 2.2E-06 7.4E-11 85.2 9.6 129 12-143 98-254 (297)
228 3h2y_A GTPase family protein; 98.3 9.4E-08 3.2E-12 98.2 -0.7 118 13-143 161-288 (368)
229 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2E-06 6.7E-11 88.5 8.5 87 8-110 16-127 (392)
230 2xtz_A Guanine nucleotide-bind 98.2 2.1E-06 7.2E-11 87.3 7.4 67 74-141 182-263 (354)
231 2xxa_A Signal recognition part 98.1 7.4E-06 2.5E-10 85.6 10.7 127 10-142 98-254 (433)
232 3l82_B F-box only protein 4; T 98.0 1.4E-05 4.7E-10 73.7 8.7 105 82-203 109-222 (227)
233 1puj_A YLQF, conserved hypothe 97.9 2E-05 7E-10 77.6 9.1 101 79-202 3-104 (282)
234 2yhs_A FTSY, cell division pro 97.9 3.2E-05 1.1E-09 81.2 10.2 125 11-141 292-451 (503)
235 1f5n_A Interferon-induced guan 97.9 4E-06 1.4E-10 90.5 3.5 103 9-126 35-148 (592)
236 3e70_C DPA, signal recognition 97.9 3.9E-05 1.3E-09 77.2 9.9 129 10-142 127-282 (328)
237 3h7h_B Transcription elongatio 97.9 5.5E-06 1.9E-10 67.8 2.8 87 417-525 4-94 (106)
238 1d1n_A Initiation factor 2; be 97.8 1.5E-05 5.1E-10 63.6 4.7 80 215-296 9-89 (99)
239 1zu4_A FTSY; GTPase, signal re 97.8 5.2E-05 1.8E-09 76.0 9.6 128 10-142 103-268 (320)
240 3h2y_A GTPase family protein; 97.8 5E-05 1.7E-09 77.8 9.3 104 84-202 55-158 (368)
241 3ec1_A YQEH GTPase; atnos1, at 97.8 3.6E-05 1.2E-09 78.9 8.0 109 78-202 52-160 (369)
242 1puj_A YLQF, conserved hypothe 97.8 2.1E-05 7.4E-10 77.4 5.8 58 10-85 118-175 (282)
243 2crv_A IF-2MT, translation ini 97.8 7.4E-05 2.5E-09 61.7 7.7 81 214-296 12-97 (120)
244 2yv5_A YJEQ protein; hydrolase 97.7 9.9E-05 3.4E-09 73.5 9.9 96 85-198 66-163 (302)
245 1rj9_A FTSY, signal recognitio 97.7 0.00016 5.6E-09 71.8 10.3 128 11-142 101-261 (304)
246 3l2o_B F-box only protein 4; s 97.6 9.6E-05 3.3E-09 71.5 7.5 105 82-203 194-307 (312)
247 1vma_A Cell division protein F 97.6 0.00014 4.9E-09 72.2 9.1 127 10-142 102-263 (306)
248 2ffh_A Protein (FFH); SRP54, s 97.6 9.3E-05 3.2E-09 76.8 7.6 126 11-142 97-251 (425)
249 2xhc_A Transcription antitermi 97.6 8.9E-05 3E-09 74.4 7.1 50 419-468 3-52 (352)
250 4dzz_A Plasmid partitioning pr 97.5 0.0004 1.4E-08 64.6 10.2 122 14-141 3-143 (206)
251 3cnl_A YLQF, putative uncharac 97.5 8.4E-05 2.9E-09 72.3 5.5 94 82-201 4-98 (262)
252 3szr_A Interferon-induced GTP- 97.4 0.00054 1.9E-08 74.9 11.5 23 14-36 47-69 (608)
253 2px0_A Flagellar biosynthesis 97.4 0.00017 5.8E-09 71.5 5.9 127 11-142 104-253 (296)
254 3cnl_A YLQF, putative uncharac 97.3 8E-05 2.7E-09 72.5 3.2 56 13-86 100-155 (262)
255 1zo1_I IF2, translation initia 97.3 0.00087 3E-08 71.0 10.2 103 192-297 389-492 (501)
256 3b9q_A Chloroplast SRP recepto 97.2 0.0012 4.3E-08 65.4 10.6 129 11-142 99-260 (302)
257 1ls1_A Signal recognition part 97.2 0.00068 2.3E-08 67.1 7.8 128 11-142 97-251 (295)
258 2og2_A Putative signal recogni 97.1 0.0016 5.5E-08 66.0 10.2 127 11-142 156-317 (359)
259 2ph1_A Nucleotide-binding prot 97.1 0.0052 1.8E-07 59.5 12.8 68 73-140 127-194 (262)
260 3kjh_A CO dehydrogenase/acetyl 97.0 0.00055 1.9E-08 65.7 5.2 66 72-139 129-194 (254)
261 1t9h_A YLOQ, probable GTPase E 97.0 0.0007 2.4E-08 67.1 5.9 77 95-178 83-161 (307)
262 3q5d_A Atlastin-1; G protein, 97.0 0.0016 5.6E-08 67.8 8.5 28 9-36 64-91 (447)
263 3cwq_A Para family chromosome 96.7 0.0037 1.3E-07 58.4 8.4 123 14-142 2-134 (209)
264 3izy_P Translation initiation 96.7 0.0035 1.2E-07 67.0 9.1 105 190-296 426-534 (537)
265 2exu_A Transcription initiatio 96.7 0.002 6.9E-08 58.7 6.2 93 411-526 94-191 (200)
266 2e70_A Transcription elongatio 96.7 0.0045 1.5E-07 45.8 6.6 47 541-591 19-65 (71)
267 1hyq_A MIND, cell division inh 96.7 0.0058 2E-07 59.1 9.6 68 74-143 110-177 (263)
268 1g7s_A Translation initiation 96.7 0.0099 3.4E-07 64.5 12.3 85 211-298 462-549 (594)
269 1vq8_T 50S ribosomal protein L 96.6 0.0022 7.5E-08 53.1 5.0 37 537-573 40-76 (120)
270 1g3q_A MIND ATPase, cell divis 96.6 0.0053 1.8E-07 58.3 8.4 67 74-142 111-177 (237)
271 3cio_A ETK, tyrosine-protein k 96.5 0.008 2.8E-07 59.5 9.0 67 74-141 213-279 (299)
272 3la6_A Tyrosine-protein kinase 96.4 0.007 2.4E-07 59.4 8.2 68 74-142 201-268 (286)
273 3bfv_A CAPA1, CAPB2, membrane 96.4 0.023 8E-07 55.2 11.6 68 74-142 191-258 (271)
274 2do3_A Transcription elongatio 96.2 0.0082 2.8E-07 44.1 5.5 51 537-591 15-65 (69)
275 2zjr_R 50S ribosomal protein L 96.2 0.0039 1.3E-07 51.4 4.1 36 538-573 14-49 (115)
276 2rcn_A Probable GTPase ENGC; Y 96.2 0.023 7.8E-07 57.4 10.5 83 96-197 128-212 (358)
277 3j21_U 50S ribosomal protein L 96.1 0.0061 2.1E-07 50.6 4.7 38 536-573 42-79 (121)
278 2zkr_t 60S ribosomal protein L 96.1 0.0054 1.9E-07 52.5 4.5 36 538-573 47-83 (145)
279 2oze_A ORF delta'; para, walke 96.0 0.043 1.5E-06 54.0 11.9 67 74-142 154-226 (298)
280 3q9l_A Septum site-determining 96.0 0.016 5.4E-07 55.8 8.5 64 74-139 113-184 (260)
281 3end_A Light-independent proto 96.0 0.013 4.3E-07 58.2 7.8 67 73-140 155-225 (307)
282 3ea0_A ATPase, para family; al 95.9 0.0091 3.1E-07 56.9 6.0 67 74-142 118-186 (245)
283 3u5e_Y L33, YL33, 60S ribosoma 95.8 0.013 4.5E-07 48.8 5.5 38 536-573 46-83 (127)
284 3v2d_Y 50S ribosomal protein L 95.7 0.0083 2.8E-07 48.9 4.0 36 538-573 5-40 (110)
285 3k9g_A PF-32 protein; ssgcid, 95.6 0.041 1.4E-06 53.2 9.6 66 73-141 143-210 (267)
286 1bif_A 6-phosphofructo-2-kinas 95.6 0.0091 3.1E-07 63.2 5.0 106 10-130 37-152 (469)
287 2afh_E Nitrogenase iron protei 95.5 0.021 7.1E-07 56.1 6.9 69 73-141 117-190 (289)
288 3ug7_A Arsenical pump-driving 95.5 0.4 1.4E-05 48.2 16.6 76 99-176 237-317 (349)
289 4ido_A Atlastin-1; GTPase, GTP 95.4 0.055 1.9E-06 56.1 10.0 28 9-36 64-91 (457)
290 1t9h_A YLOQ, probable GTPase E 95.4 0.0042 1.4E-07 61.5 1.6 23 13-35 174-196 (307)
291 1wcv_1 SOJ, segregation protei 95.4 0.053 1.8E-06 52.1 9.5 68 73-142 110-183 (257)
292 3r8s_U 50S ribosomal protein L 95.4 0.015 5.1E-07 46.8 4.5 34 539-573 3-36 (102)
293 3iz5_Y 60S ribosomal protein L 95.4 0.017 5.7E-07 49.4 5.0 39 535-573 44-82 (150)
294 4a17_S RPL26, 60S ribosomal pr 95.4 0.018 6.1E-07 48.4 5.0 37 536-572 45-81 (135)
295 1cp2_A CP2, nitrogenase iron p 95.3 0.019 6.5E-07 55.6 5.8 69 73-141 114-187 (269)
296 1ye8_A Protein THEP1, hypothet 95.2 0.011 3.9E-07 53.5 3.7 24 13-36 1-24 (178)
297 3zq6_A Putative arsenical pump 95.1 1.3 4.5E-05 43.8 18.9 42 100-141 223-264 (324)
298 2ftc_N Mitochondrial ribosomal 95.0 0.03 1E-06 44.5 5.1 31 543-573 1-31 (96)
299 1kgd_A CASK, peripheral plasma 94.8 0.015 5.2E-07 52.7 3.2 24 13-36 6-29 (180)
300 1lvg_A Guanylate kinase, GMP k 94.7 0.014 4.7E-07 53.9 2.9 24 13-36 5-28 (198)
301 3c8u_A Fructokinase; YP_612366 94.7 0.021 7.3E-07 53.0 4.2 29 9-37 19-47 (208)
302 3a00_A Guanylate kinase, GMP k 94.4 0.02 7E-07 52.1 3.2 24 14-37 3-26 (186)
303 3asz_A Uridine kinase; cytidin 94.4 0.025 8.6E-07 52.4 3.9 27 10-36 4-30 (211)
304 1znw_A Guanylate kinase, GMP k 94.4 0.021 7.1E-07 53.0 3.2 24 13-36 21-44 (207)
305 2ckk_A KIN17; beta barrel, rib 94.4 0.087 3E-06 44.4 6.6 53 541-593 72-126 (127)
306 2jz2_A SSL0352 protein; SH3-li 94.3 0.24 8.4E-06 35.0 7.6 51 540-592 2-54 (66)
307 1zp6_A Hypothetical protein AT 94.3 0.027 9.1E-07 51.3 3.7 25 11-35 8-32 (191)
308 3tr0_A Guanylate kinase, GMP k 94.3 0.027 9.1E-07 51.9 3.6 24 13-36 8-31 (205)
309 1z6g_A Guanylate kinase; struc 94.1 0.027 9.1E-07 52.8 3.2 24 13-36 24-47 (218)
310 1htw_A HI0065; nucleotide-bind 94.0 0.033 1.1E-06 49.3 3.5 26 11-36 32-57 (158)
311 1s96_A Guanylate kinase, GMP k 94.0 0.028 9.7E-07 52.7 3.2 25 13-37 17-41 (219)
312 3tau_A Guanylate kinase, GMP k 93.9 0.037 1.3E-06 51.3 3.8 26 11-36 7-32 (208)
313 2j41_A Guanylate kinase; GMP, 93.7 0.038 1.3E-06 50.8 3.7 25 12-36 6-30 (207)
314 1ihu_A Arsenical pump-driving 93.7 0.25 8.7E-06 53.6 10.7 42 100-141 199-240 (589)
315 4gp7_A Metallophosphoesterase; 93.7 0.032 1.1E-06 50.0 2.9 21 13-33 10-30 (171)
316 4eun_A Thermoresistant glucoki 93.7 0.042 1.4E-06 50.5 3.8 26 11-36 28-53 (200)
317 1knq_A Gluconate kinase; ALFA/ 93.7 0.048 1.6E-06 48.8 4.1 26 11-36 7-32 (175)
318 3ney_A 55 kDa erythrocyte memb 93.6 0.037 1.3E-06 50.9 3.2 25 12-36 19-43 (197)
319 3tif_A Uncharacterized ABC tra 93.6 0.031 1.1E-06 53.1 2.7 22 14-35 33-54 (235)
320 2pcj_A ABC transporter, lipopr 93.5 0.033 1.1E-06 52.5 2.8 22 14-35 32-53 (224)
321 1kag_A SKI, shikimate kinase I 93.5 0.04 1.4E-06 49.2 3.2 23 13-35 5-27 (173)
322 2xj4_A MIPZ; replication, cell 93.4 0.27 9.1E-06 47.9 9.4 35 74-110 103-137 (286)
323 2onk_A Molybdate/tungstate ABC 93.4 0.04 1.4E-06 52.5 3.2 24 13-36 25-48 (240)
324 3t61_A Gluconokinase; PSI-biol 93.4 0.043 1.5E-06 50.5 3.4 24 13-36 19-42 (202)
325 1np6_A Molybdopterin-guanine d 93.4 0.052 1.8E-06 48.8 3.8 25 13-37 7-31 (174)
326 3b85_A Phosphate starvation-in 93.4 0.038 1.3E-06 51.3 3.0 22 14-35 24-45 (208)
327 2rcn_A Probable GTPase ENGC; Y 93.4 0.037 1.3E-06 55.8 3.1 24 13-36 216-239 (358)
328 2bdt_A BH3686; alpha-beta prot 93.3 0.048 1.6E-06 49.6 3.5 21 14-34 4-24 (189)
329 3aez_A Pantothenate kinase; tr 93.3 0.054 1.9E-06 53.7 4.1 29 9-37 87-115 (312)
330 1xjc_A MOBB protein homolog; s 93.3 0.061 2.1E-06 48.0 4.0 26 13-38 5-30 (169)
331 2v9p_A Replication protein E1; 93.2 0.049 1.7E-06 53.7 3.5 26 11-36 125-150 (305)
332 2if2_A Dephospho-COA kinase; a 93.2 0.051 1.7E-06 50.0 3.5 22 13-34 2-23 (204)
333 3kb2_A SPBC2 prophage-derived 93.2 0.059 2E-06 47.9 3.8 22 14-35 3-24 (173)
334 2cbz_A Multidrug resistance-as 93.2 0.04 1.4E-06 52.4 2.7 22 14-35 33-54 (237)
335 2yvu_A Probable adenylyl-sulfa 93.2 0.083 2.8E-06 47.8 4.8 31 8-38 9-39 (186)
336 2i3b_A HCR-ntpase, human cance 93.1 0.043 1.5E-06 50.1 2.8 24 14-37 3-26 (189)
337 2pze_A Cystic fibrosis transme 93.1 0.041 1.4E-06 52.0 2.7 22 14-35 36-57 (229)
338 2jeo_A Uridine-cytidine kinase 93.1 0.058 2E-06 51.4 3.8 26 11-36 24-49 (245)
339 2f1r_A Molybdopterin-guanine d 93.1 0.034 1.2E-06 49.9 2.0 25 14-38 4-28 (171)
340 2d2e_A SUFC protein; ABC-ATPas 93.0 0.05 1.7E-06 52.1 3.2 22 14-35 31-52 (250)
341 1mv5_A LMRA, multidrug resista 93.0 0.042 1.4E-06 52.4 2.7 23 14-36 30-52 (243)
342 1g6h_A High-affinity branched- 93.0 0.042 1.4E-06 52.9 2.7 23 14-36 35-57 (257)
343 1sgw_A Putative ABC transporte 93.0 0.04 1.4E-06 51.4 2.5 22 14-35 37-58 (214)
344 3tqc_A Pantothenate kinase; bi 93.0 0.072 2.5E-06 52.9 4.4 29 9-37 89-117 (321)
345 1odf_A YGR205W, hypothetical 3 93.0 0.076 2.6E-06 52.1 4.5 30 9-38 28-57 (290)
346 3gfo_A Cobalt import ATP-bindi 93.0 0.043 1.5E-06 53.3 2.7 22 14-35 36-57 (275)
347 2eyu_A Twitching motility prot 92.9 0.056 1.9E-06 52.2 3.4 27 11-37 24-50 (261)
348 2ff7_A Alpha-hemolysin translo 92.9 0.045 1.5E-06 52.4 2.7 23 14-36 37-59 (247)
349 3zvl_A Bifunctional polynucleo 92.9 0.32 1.1E-05 50.3 9.4 25 11-35 257-281 (416)
350 3lw7_A Adenylate kinase relate 92.9 0.053 1.8E-06 48.1 3.1 20 13-32 2-21 (179)
351 4g1u_C Hemin import ATP-bindin 92.9 0.042 1.4E-06 53.2 2.5 23 14-36 39-61 (266)
352 1b0u_A Histidine permease; ABC 92.9 0.045 1.5E-06 52.9 2.7 22 14-35 34-55 (262)
353 3fgn_A Dethiobiotin synthetase 92.9 1.3 4.3E-05 42.2 12.8 66 74-139 126-197 (251)
354 1jjv_A Dephospho-COA kinase; P 92.9 0.059 2E-06 49.7 3.4 22 13-34 3-24 (206)
355 3uie_A Adenylyl-sulfate kinase 92.9 0.085 2.9E-06 48.5 4.5 27 11-37 24-50 (200)
356 1ji0_A ABC transporter; ATP bi 92.8 0.047 1.6E-06 52.0 2.7 23 14-36 34-56 (240)
357 2bbw_A Adenylate kinase 4, AK4 92.8 0.057 2E-06 51.5 3.3 23 12-34 27-49 (246)
358 3cm0_A Adenylate kinase; ATP-b 92.8 0.079 2.7E-06 47.8 4.2 24 12-35 4-27 (186)
359 1rz3_A Hypothetical protein rb 92.8 0.098 3.3E-06 48.1 4.8 28 10-37 20-47 (201)
360 1cke_A CK, MSSA, protein (cyti 92.8 0.062 2.1E-06 50.3 3.5 23 13-35 6-28 (227)
361 2ghi_A Transport protein; mult 92.8 0.048 1.6E-06 52.6 2.7 23 14-36 48-70 (260)
362 2olj_A Amino acid ABC transpor 92.7 0.049 1.7E-06 52.6 2.7 22 14-35 52-73 (263)
363 2qor_A Guanylate kinase; phosp 92.7 0.059 2E-06 49.7 3.2 25 12-36 12-36 (204)
364 2qt1_A Nicotinamide riboside k 92.7 0.071 2.4E-06 49.2 3.8 26 10-35 19-44 (207)
365 2qi9_C Vitamin B12 import ATP- 92.7 0.049 1.7E-06 52.1 2.7 23 14-36 28-50 (249)
366 2zu0_C Probable ATP-dependent 92.7 0.058 2E-06 52.2 3.2 22 14-35 48-69 (267)
367 3bbo_W Ribosomal protein L24; 92.7 0.012 3.9E-07 52.5 -1.6 34 539-572 68-101 (191)
368 1vpl_A ABC transporter, ATP-bi 92.7 0.05 1.7E-06 52.3 2.7 22 14-35 43-64 (256)
369 3trf_A Shikimate kinase, SK; a 92.7 0.072 2.5E-06 48.1 3.7 24 12-35 5-28 (185)
370 2jaq_A Deoxyguanosine kinase; 92.7 0.07 2.4E-06 48.9 3.7 23 14-36 2-24 (205)
371 3fb4_A Adenylate kinase; psych 92.7 0.07 2.4E-06 49.6 3.7 23 13-35 1-23 (216)
372 2grj_A Dephospho-COA kinase; T 92.7 0.082 2.8E-06 48.4 4.0 28 8-35 8-35 (192)
373 2yv5_A YJEQ protein; hydrolase 92.6 0.061 2.1E-06 53.1 3.3 21 13-33 166-186 (302)
374 1uf9_A TT1252 protein; P-loop, 92.6 0.081 2.8E-06 48.4 4.0 26 10-35 6-31 (203)
375 2rhm_A Putative kinase; P-loop 92.6 0.091 3.1E-06 47.6 4.3 25 12-36 5-29 (193)
376 1ly1_A Polynucleotide kinase; 92.6 0.076 2.6E-06 47.5 3.6 22 13-34 3-24 (181)
377 1aky_A Adenylate kinase; ATP:A 92.5 0.078 2.7E-06 49.5 3.8 26 10-35 2-27 (220)
378 1nks_A Adenylate kinase; therm 92.5 0.09 3.1E-06 47.6 4.1 25 13-37 2-26 (194)
379 2ixe_A Antigen peptide transpo 92.5 0.055 1.9E-06 52.5 2.7 23 14-36 47-69 (271)
380 2yz2_A Putative ABC transporte 92.5 0.055 1.9E-06 52.3 2.7 22 14-35 35-56 (266)
381 1ex7_A Guanylate kinase; subst 92.5 0.073 2.5E-06 48.4 3.4 22 15-36 4-25 (186)
382 2nq2_C Hypothetical ABC transp 92.5 0.057 2E-06 51.8 2.8 22 14-35 33-54 (253)
383 2ihy_A ABC transporter, ATP-bi 92.4 0.056 1.9E-06 52.7 2.7 23 14-36 49-71 (279)
384 1nn5_A Similar to deoxythymidy 92.4 0.099 3.4E-06 48.3 4.3 27 11-37 8-34 (215)
385 2b8t_A Thymidine kinase; deoxy 92.4 0.28 9.6E-06 45.9 7.4 29 9-37 9-37 (223)
386 1ihu_A Arsenical pump-driving 92.4 1 3.5E-05 48.8 13.0 44 98-141 489-532 (589)
387 3dl0_A Adenylate kinase; phosp 92.4 0.079 2.7E-06 49.2 3.6 23 13-35 1-23 (216)
388 1sq5_A Pantothenate kinase; P- 92.4 0.088 3E-06 52.1 4.1 28 10-37 78-105 (308)
389 3vaa_A Shikimate kinase, SK; s 92.3 0.087 3E-06 48.3 3.8 25 12-36 25-49 (199)
390 3qxc_A Dethiobiotin synthetase 92.3 0.6 2.1E-05 44.2 9.7 93 73-173 130-227 (242)
391 1kht_A Adenylate kinase; phosp 92.2 0.093 3.2E-06 47.4 3.8 25 13-37 4-28 (192)
392 2vp4_A Deoxynucleoside kinase; 92.2 0.07 2.4E-06 50.3 2.9 26 10-35 18-43 (230)
393 1y63_A LMAJ004144AAA protein; 92.1 0.11 3.6E-06 47.1 4.1 25 11-35 9-33 (184)
394 3lnc_A Guanylate kinase, GMP k 92.1 0.048 1.6E-06 51.4 1.8 24 13-36 28-52 (231)
395 2wwf_A Thymidilate kinase, put 92.1 0.11 3.7E-06 48.0 4.2 27 11-37 9-35 (212)
396 3tlx_A Adenylate kinase 2; str 92.1 0.11 3.6E-06 49.5 4.2 26 10-35 27-52 (243)
397 2cdn_A Adenylate kinase; phosp 92.1 0.11 3.8E-06 47.6 4.2 27 9-35 17-43 (201)
398 2c95_A Adenylate kinase 1; tra 92.0 0.11 3.6E-06 47.3 4.0 25 11-35 8-32 (196)
399 2plr_A DTMP kinase, probable t 92.0 0.11 3.8E-06 47.8 4.1 26 12-37 4-29 (213)
400 1u0l_A Probable GTPase ENGC; p 92.0 0.065 2.2E-06 52.9 2.5 23 13-35 170-192 (301)
401 2pjz_A Hypothetical protein ST 91.9 0.07 2.4E-06 51.5 2.7 23 14-36 32-54 (263)
402 3jvv_A Twitching mobility prot 91.9 0.11 3.7E-06 52.5 4.2 26 13-38 124-149 (356)
403 2v54_A DTMP kinase, thymidylat 91.9 0.1 3.5E-06 47.8 3.7 25 12-36 4-28 (204)
404 2bbs_A Cystic fibrosis transme 91.9 0.074 2.5E-06 52.1 2.8 22 14-35 66-87 (290)
405 1tev_A UMP-CMP kinase; ploop, 91.8 0.11 3.9E-06 47.0 3.9 24 12-35 3-26 (196)
406 4a74_A DNA repair and recombin 91.8 0.091 3.1E-06 49.1 3.3 23 13-35 26-48 (231)
407 3iqw_A Tail-anchored protein t 91.8 7.9 0.00027 38.3 17.7 41 100-140 223-263 (334)
408 1ukz_A Uridylate kinase; trans 91.8 0.14 4.6E-06 47.0 4.4 27 9-35 12-38 (203)
409 2woo_A ATPase GET3; tail-ancho 91.7 2.7 9.2E-05 41.7 14.3 41 100-140 222-262 (329)
410 4e22_A Cytidylate kinase; P-lo 91.7 0.11 3.6E-06 49.9 3.7 24 11-34 26-49 (252)
411 2pt5_A Shikimate kinase, SK; a 91.7 0.11 3.8E-06 45.9 3.6 22 14-35 2-23 (168)
412 2ehv_A Hypothetical protein PH 91.7 0.088 3E-06 49.9 3.1 22 13-34 31-52 (251)
413 2zr9_A Protein RECA, recombina 91.7 0.57 1.9E-05 47.1 9.2 25 13-37 62-86 (349)
414 1gtv_A TMK, thymidylate kinase 91.6 0.059 2E-06 49.9 1.8 24 14-37 2-25 (214)
415 1e4v_A Adenylate kinase; trans 91.6 0.12 3.9E-06 48.1 3.8 23 13-35 1-23 (214)
416 3nh6_A ATP-binding cassette SU 91.6 0.055 1.9E-06 53.4 1.6 22 14-35 82-103 (306)
417 2pbr_A DTMP kinase, thymidylat 91.6 0.13 4.3E-06 46.7 4.0 23 14-36 2-24 (195)
418 2z0h_A DTMP kinase, thymidylat 91.6 0.12 4.2E-06 46.9 3.9 23 14-36 2-24 (197)
419 3ec2_A DNA replication protein 91.5 0.1 3.6E-06 46.8 3.2 26 12-37 38-63 (180)
420 1lw7_A Transcriptional regulat 91.5 0.088 3E-06 53.5 3.0 25 12-36 170-194 (365)
421 3tui_C Methionine import ATP-b 91.4 0.098 3.4E-06 52.8 3.2 22 14-35 56-77 (366)
422 3fvq_A Fe(3+) IONS import ATP- 91.3 0.098 3.3E-06 52.8 3.1 23 14-36 32-54 (359)
423 1qhx_A CPT, protein (chloramph 91.3 0.12 4.1E-06 46.2 3.5 24 13-36 4-27 (178)
424 2gza_A Type IV secretion syste 91.3 0.089 3.1E-06 53.4 2.8 24 13-36 176-199 (361)
425 3of5_A Dethiobiotin synthetase 91.3 0.8 2.7E-05 42.9 9.2 67 73-141 109-182 (228)
426 1via_A Shikimate kinase; struc 91.2 0.11 3.8E-06 46.4 3.1 23 14-36 6-28 (175)
427 1vht_A Dephospho-COA kinase; s 91.2 0.14 4.7E-06 47.6 3.9 23 12-34 4-26 (218)
428 2pez_A Bifunctional 3'-phospho 91.2 0.14 4.8E-06 45.9 3.8 26 11-36 4-29 (179)
429 1zd8_A GTP:AMP phosphotransfer 91.2 0.13 4.5E-06 48.2 3.7 24 12-35 7-30 (227)
430 2kjq_A DNAA-related protein; s 91.1 0.12 4.2E-06 45.0 3.1 26 12-37 36-61 (149)
431 3io5_A Recombination and repai 91.1 1 3.5E-05 44.3 10.0 24 14-37 30-53 (333)
432 1qf9_A UMP/CMP kinase, protein 91.1 0.18 6.3E-06 45.5 4.5 23 13-35 7-29 (194)
433 1uj2_A Uridine-cytidine kinase 91.1 0.14 4.8E-06 48.9 3.9 27 10-36 20-46 (252)
434 3hr8_A Protein RECA; alpha and 91.1 0.65 2.2E-05 46.7 8.8 25 13-37 62-86 (356)
435 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.079 2.7E-06 53.0 2.1 24 13-36 172-195 (330)
436 1z47_A CYSA, putative ABC-tran 91.0 0.12 4E-06 52.2 3.2 23 14-36 43-65 (355)
437 4a1f_A DNAB helicase, replicat 91.0 0.34 1.2E-05 48.4 6.6 25 14-38 48-72 (338)
438 2yyz_A Sugar ABC transporter, 90.9 0.12 4.1E-06 52.2 3.2 23 14-36 31-53 (359)
439 1zuh_A Shikimate kinase; alpha 90.9 0.15 5.2E-06 45.1 3.7 23 13-35 8-30 (168)
440 1xp8_A RECA protein, recombina 90.8 1.3 4.4E-05 44.7 10.9 23 14-36 76-98 (366)
441 3sr0_A Adenylate kinase; phosp 90.8 0.15 5.1E-06 47.2 3.6 23 13-35 1-23 (206)
442 2bwj_A Adenylate kinase 5; pho 90.8 0.16 5.4E-06 46.2 3.8 24 12-35 12-35 (199)
443 3rlf_A Maltose/maltodextrin im 90.8 0.12 3.9E-06 52.7 3.0 23 14-36 31-53 (381)
444 2it1_A 362AA long hypothetical 90.7 0.13 4.3E-06 52.1 3.2 23 14-36 31-53 (362)
445 1gvn_B Zeta; postsegregational 90.6 0.17 5.8E-06 49.5 4.0 26 10-35 31-56 (287)
446 3be4_A Adenylate kinase; malar 90.6 0.15 5.1E-06 47.5 3.5 25 12-36 5-29 (217)
447 2vli_A Antibiotic resistance p 90.6 0.11 3.6E-06 46.8 2.4 24 12-35 5-28 (183)
448 2ewv_A Twitching motility prot 90.6 0.16 5.5E-06 51.6 3.9 28 11-38 135-162 (372)
449 1g29_1 MALK, maltose transport 90.5 0.13 4.6E-06 52.2 3.2 23 14-36 31-53 (372)
450 2xb4_A Adenylate kinase; ATP-b 90.5 0.16 5.6E-06 47.5 3.7 23 13-35 1-23 (223)
451 1v43_A Sugar-binding transport 90.5 0.13 4.6E-06 52.1 3.2 23 14-36 39-61 (372)
452 3r20_A Cytidylate kinase; stru 90.5 0.17 5.7E-06 47.8 3.7 25 11-35 8-32 (233)
453 2p5t_B PEZT; postsegregational 90.5 0.15 5.2E-06 48.7 3.5 28 9-36 29-56 (253)
454 3iij_A Coilin-interacting nucl 90.4 0.16 5.4E-06 45.6 3.4 24 12-35 11-34 (180)
455 1zak_A Adenylate kinase; ATP:A 90.3 0.16 5.5E-06 47.3 3.4 24 13-36 6-29 (222)
456 4eaq_A DTMP kinase, thymidylat 90.3 0.24 8.1E-06 46.6 4.5 29 10-38 24-52 (229)
457 2f6r_A COA synthase, bifunctio 90.3 0.19 6.4E-06 49.0 3.9 24 10-33 73-96 (281)
458 1p9r_A General secretion pathw 90.2 0.16 5.4E-06 52.5 3.4 26 11-36 166-191 (418)
459 2oap_1 GSPE-2, type II secreti 90.1 0.12 4E-06 55.0 2.5 23 13-35 261-283 (511)
460 1ak2_A Adenylate kinase isoenz 90.1 0.2 6.9E-06 47.1 3.9 25 11-35 15-39 (233)
461 3d31_A Sulfate/molybdate ABC t 90.0 0.1 3.5E-06 52.4 1.9 23 14-36 28-50 (348)
462 1e6c_A Shikimate kinase; phosp 90.0 0.19 6.4E-06 44.6 3.4 22 14-35 4-25 (173)
463 3kta_A Chromosome segregation 90.0 0.17 5.8E-06 45.4 3.2 24 14-37 28-51 (182)
464 1nij_A Hypothetical protein YJ 89.9 0.2 6.8E-06 49.8 3.9 24 12-35 4-27 (318)
465 3a4m_A L-seryl-tRNA(SEC) kinas 89.8 0.25 8.4E-06 47.5 4.3 24 13-36 5-28 (260)
466 3io3_A DEHA2D07832P; chaperone 89.7 8.2 0.00028 38.5 15.7 42 100-141 232-273 (348)
467 1m7g_A Adenylylsulfate kinase; 89.7 0.26 8.9E-06 45.5 4.3 27 11-37 24-50 (211)
468 3gd7_A Fusion complex of cysti 89.7 0.18 6E-06 51.6 3.3 24 14-37 49-72 (390)
469 2w0m_A SSO2452; RECA, SSPF, un 89.7 0.23 7.9E-06 46.3 4.0 25 13-37 24-48 (235)
470 1a7j_A Phosphoribulokinase; tr 89.6 0.14 4.6E-06 50.3 2.3 26 11-36 4-29 (290)
471 2iyv_A Shikimate kinase, SK; t 89.6 0.21 7.3E-06 44.9 3.5 22 14-35 4-25 (184)
472 1q3t_A Cytidylate kinase; nucl 89.5 0.23 7.7E-06 46.9 3.8 27 9-35 13-39 (236)
473 1oxx_K GLCV, glucose, ABC tran 89.5 0.11 3.9E-06 52.3 1.7 23 14-36 33-55 (353)
474 2ze6_A Isopentenyl transferase 89.4 0.23 7.8E-06 47.5 3.7 23 14-36 3-25 (253)
475 3qf7_A RAD50; ABC-ATPase, ATPa 89.3 0.92 3.1E-05 45.9 8.4 23 15-37 26-48 (365)
476 3nwj_A ATSK2; P loop, shikimat 89.2 0.2 6.8E-06 47.8 3.1 23 13-35 49-71 (250)
477 2axn_A 6-phosphofructo-2-kinas 89.1 0.73 2.5E-05 49.0 7.7 26 11-36 34-59 (520)
478 2npi_A Protein CLP1; CLP1-PCF1 89.1 0.2 6.9E-06 52.4 3.3 25 13-37 139-163 (460)
479 3umf_A Adenylate kinase; rossm 89.0 0.31 1.1E-05 45.4 4.2 23 13-35 30-52 (217)
480 2obl_A ESCN; ATPase, hydrolase 88.9 0.23 8E-06 49.9 3.6 23 13-35 72-94 (347)
481 3gmt_A Adenylate kinase; ssgci 88.7 0.28 9.5E-06 46.0 3.7 25 11-35 7-31 (230)
482 1f2t_A RAD50 ABC-ATPase; DNA d 88.7 0.22 7.6E-06 43.3 2.8 22 15-36 26-47 (149)
483 3euj_A Chromosome partition pr 88.4 0.25 8.7E-06 51.8 3.5 24 13-36 30-53 (483)
484 1u94_A RECA protein, recombina 88.3 1.4 4.7E-05 44.4 8.8 25 13-37 64-88 (356)
485 1yqt_A RNAse L inhibitor; ATP- 88.2 0.24 8.2E-06 53.0 3.2 24 13-36 48-71 (538)
486 3bh0_A DNAB-like replicative h 88.0 0.69 2.4E-05 45.7 6.3 25 13-37 69-93 (315)
487 3ake_A Cytidylate kinase; CMP 88.0 0.33 1.1E-05 44.4 3.7 22 14-35 4-25 (208)
488 2x8a_A Nuclear valosin-contain 87.9 0.27 9.3E-06 47.6 3.2 21 15-35 47-67 (274)
489 3d3q_A TRNA delta(2)-isopenten 87.6 0.36 1.2E-05 48.1 3.9 24 13-36 8-31 (340)
490 1zcb_A G alpha I/13; GTP-bindi 87.6 0.32 1.1E-05 49.2 3.6 23 10-32 31-53 (362)
491 1cr0_A DNA primase/helicase; R 87.4 0.31 1.1E-05 47.7 3.3 25 14-38 37-61 (296)
492 3bgw_A DNAB-like replicative h 87.3 1.1 3.9E-05 46.5 7.7 26 13-38 198-223 (444)
493 1ixz_A ATP-dependent metallopr 87.3 0.32 1.1E-05 46.3 3.2 22 14-35 51-72 (254)
494 2dpy_A FLII, flagellum-specifi 87.2 0.34 1.2E-05 50.4 3.6 23 13-35 158-180 (438)
495 2chg_A Replication factor C sm 87.2 2.5 8.7E-05 38.3 9.4 23 14-36 40-62 (226)
496 3j16_B RLI1P; ribosome recycli 87.1 0.3 1E-05 53.0 3.2 24 13-36 104-127 (608)
497 3ozx_A RNAse L inhibitor; ATP 87.0 0.27 9.2E-06 52.6 2.7 26 11-36 24-49 (538)
498 3b60_A Lipid A export ATP-bind 87.0 0.27 9.4E-06 53.2 2.8 23 14-36 371-393 (582)
499 3b5x_A Lipid A export ATP-bind 86.9 0.29 1E-05 53.0 3.0 23 14-36 371-393 (582)
500 1svm_A Large T antigen; AAA+ f 86.9 0.39 1.3E-05 48.8 3.7 25 11-35 168-192 (377)
No 1
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=4.2e-64 Score=527.78 Aligned_cols=384 Identities=56% Similarity=0.944 Sum_probs=344.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
|++++|+++||+|||||||+++|++.....+...+..++.+|.+.+|+++|+|++.....++.+++.++|||||||++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 57899999999999999999999987655544443334457888999999999999988898888999999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCce
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 169 (593)
.+|..+++.+|++|+|+|+++|.+.||++|+.++..+++|++||++||||+.+.++.++.+..+++++++.+++....+|
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 99999999999999999999999999999999999999998777899999986445666777788999998887656789
Q ss_pred EEEeccCccccCC-CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEe
Q psy8869 170 IIKGSAKLALEGD-TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 248 (593)
Q Consensus 170 vi~~Sa~~g~~~~-~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~ 248 (593)
++++||++|.|+. ++||. .++.+|+++|.+.+|.|.++.++|++++|+++|.++++|+|++|+|.+|+|++||.|.+.
T Consensus 161 ~i~~SA~~g~n~~~~~~~~-g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 161 IIVGSALCALEQRDPELGL-KSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EEECCHHHHHTTCCTTTTH-HHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEEeehhhcccccCCCccC-CcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 9999999987754 46874 128999999999999888888999999999999999999999999999999999999998
Q ss_pred ecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCccccCC
Q psy8869 249 GIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFFSN 328 (593)
Q Consensus 249 p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g 328 (593)
|.+.+..++|++|+.++.++++|.|||+|+++|+|++..++++||+|++++++.+++.|+|++.||+++.+++.++|..|
T Consensus 240 ~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~g 319 (397)
T 1d2e_A 240 GHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSH 319 (397)
T ss_dssp ETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBCTT
T ss_pred CCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccCCC
Confidence 86434789999999999999999999999999999998999999999999888889999999999998655556789999
Q ss_pred ceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecch
Q psy8869 329 YRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTK 394 (593)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~~ 394 (593)
|++++|+++.+++|++.+..++..+++||.+.|+|++.+|+|+++|+||+||++++|+|+|.|+..
T Consensus 320 ~~~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~~~~ti~~G~i~~~ 385 (397)
T 1d2e_A 320 FMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDT 385 (397)
T ss_dssp CCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEEC
T ss_pred CEEEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEeCCeEEEEEEEeec
Confidence 999999999999999986666788999999999999999999999999999999999999988543
No 2
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=8.2e-64 Score=527.61 Aligned_cols=388 Identities=70% Similarity=1.116 Sum_probs=342.9
Q ss_pred ccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC-CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEec
Q psy8869 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG-GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDC 82 (593)
Q Consensus 4 ~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDt 82 (593)
..|.++++.++|+++||+|||||||+++|++.....+. ..+..++.+|.+.+|+++|+|++.....++.++..++||||
T Consensus 3 ~~~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDt 82 (405)
T 2c78_A 3 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDC 82 (405)
T ss_dssp ------CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEEC
T ss_pred ccccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEEC
Confidence 45677889999999999999999999999986555432 23333446899999999999999988889888999999999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|||++|..++..+++.+|++|+|+|++++.+.|+++|+..+..+++|++++++||+|+.+.++.++.+..++.++++.++
T Consensus 83 pG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 83 PGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp CCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999877789999998644566667778889999888
Q ss_pred CCCCCceEEEeccCcccc----------CCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEE
Q psy8869 163 FPGNDIPIIKGSAKLALE----------GDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTG 232 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~----------~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G 232 (593)
+....+|++++||++|.+ +.++||. ++.+|+++|.+++|.|.++.+.|++++|+++|+++++|++++|
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~--~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g 240 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVD--KIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHH--HHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEE
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccc--cHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEE
Confidence 765578999999999976 4556763 5889999999999988888899999999999999999999999
Q ss_pred EEEeeeEecCCEEEEeecCC-ceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEE
Q psy8869 233 RVERGIVRVGEELEIIGIKD-TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEI 311 (593)
Q Consensus 233 ~v~~G~l~~gd~v~i~p~~~-~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i 311 (593)
+|.+|+|++||.|.+.|.+. ...++|++|+.++.++++|.|||+|+++|+|++..++++||+|++++++.+++.|+|++
T Consensus 241 ~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v 320 (405)
T 2c78_A 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASV 320 (405)
T ss_dssp ECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEE
T ss_pred EEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEE
Confidence 99999999999999998643 26789999999999999999999999999999999999999999998888899999999
Q ss_pred EEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeee
Q psy8869 312 YALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNL 391 (593)
Q Consensus 312 ~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v 391 (593)
.||+++.++++++|..||++++|+++.+++|++.+..++..+++||.+.|+|++.+|+|+++|+||+||++++|+|+|.|
T Consensus 321 ~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~~~~ti~~G~i 400 (405)
T 2c78_A 321 YVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVV 400 (405)
T ss_dssp EECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEETTEEEEEEEE
T ss_pred EEecccCCCccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEECceEEEccCCEEEEEcCCeEEEEEEE
Confidence 99997655556789999999999999999999986666778999999999999999999999999999999999999988
Q ss_pred cc
Q psy8869 392 LT 393 (593)
Q Consensus 392 ~~ 393 (593)
+.
T Consensus 401 ~~ 402 (405)
T 2c78_A 401 TK 402 (405)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=8.5e-62 Score=515.36 Aligned_cols=373 Identities=28% Similarity=0.395 Sum_probs=327.8
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEe
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (593)
..+++++||+++||+|+|||||+++|++... ..+.+++...+.+|....|+++|+|++.....++
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 4567899999999999999999999975421 1234445556779999999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecCCCC--
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD-- 142 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~-- 142 (593)
++++.++|||||||++|.++|..+++.+|++||||||++|.+ .||++|+.++..+++|++||++||||+.+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 999999999999999999999999999999999999999876 79999999999999998888899999964
Q ss_pred H-HHHHHHHHHHHHHHHhhcCCCCC-CceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeE
Q psy8869 143 D-EELLELVEIEIRELLNKYEFPGN-DIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLL 215 (593)
Q Consensus 143 ~-~~~~~~~~~~~~~~l~~~~~~~~-~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 215 (593)
+ ++.++.+..++.++++.+++... .+|++++||++|.+.. ++||.+. .|++.|.. +++|.+..+.|++|
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~---~L~~~l~~-i~~~~~~~~~p~r~ 247 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGL---PFIPYLDN-LPNFNRSVDGPIRL 247 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCch---HHHHHHHh-CCCCccCCCCCeEE
Confidence 2 45677788889999998888532 6899999999998743 3798754 46666655 67778888999999
Q ss_pred EEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEE
Q psy8869 216 PVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL 295 (593)
Q Consensus 216 ~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl 295 (593)
+|+++|+ +.|++++|+|.+|+|++||.|.++|++ ..++|++|+.++.++++|.|||+|+++|+|++..+++|||+|
T Consensus 248 ~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 248 PIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNK--HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred EEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCC--ceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 9999985 789999999999999999999999865 678999999999999999999999999999999999999999
Q ss_pred ecCCCC-CcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEe-------------cCCcccccCCCEEEE
Q psy8869 296 AKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIEL-------------PKNKEMVMPGDNVLI 361 (593)
Q Consensus 296 ~~~~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~-------------~~~~~~l~~gd~~~v 361 (593)
++++.+ ++++.|+|++.||+++ ++|..||++.+||++.++.|++.- ..++++|+.||.+.|
T Consensus 324 ~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v 398 (439)
T 3j2k_7 324 CDPSNLCHSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIA 398 (439)
T ss_pred cCCCCCCceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEE
Confidence 998764 5678999999999985 469999999999999999998752 134568999999999
Q ss_pred EEEeCceeeeecC------CeEEEeeCCeEEEeeeec
Q psy8869 362 TVRLINPIAMEEG------LRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 362 ~~~~~~p~~~~~~------~r~vlr~~~~~i~~G~v~ 392 (593)
++++.+|+|++++ +||+|||+|+|+|+|.|+
T Consensus 399 ~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~ 435 (439)
T 3j2k_7 399 RLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVL 435 (439)
T ss_pred EEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEE
Confidence 9999999999997 699999999999999875
No 4
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=7.9e-62 Score=545.79 Aligned_cols=392 Identities=74% Similarity=1.207 Sum_probs=333.6
Q ss_pred CcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEe
Q psy8869 2 AKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVD 81 (593)
Q Consensus 2 ~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiD 81 (593)
+...+.+.++.++|+++||+|||||||+++|++.....+...+..++.+|.+++|+++|+|++.....++.+++.++|||
T Consensus 286 ~k~~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IID 365 (1289)
T 3avx_A 286 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVD 365 (1289)
T ss_dssp C---CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEE
T ss_pred hhhhhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEE
Confidence 34456678899999999999999999999999875555443333344688999999999999999888998899999999
Q ss_pred cCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 82 tpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
||||++|..+|..+++.+|++|||||+++|.+.||++|+.++..+++|++||++||||+.+.++.++.+..++.++++.+
T Consensus 366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 366 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987778999999975566677778899999988
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEec
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~ 241 (593)
++....+|++++||++|.++.++|| .++.+|+++|.+.+|.|.++.+.|++++|+++|+++++|+|++|+|.+|+|++
T Consensus 446 G~~~~~vp~IpvSAktG~ng~~~w~--eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkv 523 (1289)
T 3avx_A 446 DFPGDDTPIVRGSALKALEGDAEWE--AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523 (1289)
T ss_dssp TSCTTTCCEEECCSTTTTTCCHHHH--HHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEET
T ss_pred cccccceeEEEEEeccCCCCCcccc--ccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEec
Confidence 8765678999999999976655676 46899999999999988888899999999999999999999999999999999
Q ss_pred CCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCC
Q psy8869 242 GEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGR 321 (593)
Q Consensus 242 gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 321 (593)
||.|.+.|.+....++|++|+.++.++++|.|||+|+++|+|++..++++||+|++++.+.+++.|+|++.||+++++++
T Consensus 524 GD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~ 603 (1289)
T 3avx_A 524 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGR 603 (1289)
T ss_dssp TCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSC
T ss_pred CCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccc
Confidence 99999998654467899999999999999999999999999999999999999999988888999999999998764445
Q ss_pred CccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCCeEEEeeCCeEEEeeeecchh
Q psy8869 322 HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGVQQFIQDNLLTKE 395 (593)
Q Consensus 322 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~~~i~~G~v~~~~ 395 (593)
++++..||+|++|+++.+++|++.+..+++.+++||.+.|+|++.+|+|+++|+||+||++++|+|+|.|+...
T Consensus 604 ~~pi~~G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd~grTIG~G~V~~v~ 677 (1289)
T 3avx_A 604 HTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677 (1289)
T ss_dssp SSCBCTTCCCEEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEETTEEEEEEEEEEEC
T ss_pred cccccCCCceEEEEeeeeEEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEeCCeEEEEEEEeeec
Confidence 67899999999999999999999866667789999999999999999999999999999999999999886543
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=6.8e-61 Score=511.15 Aligned_cols=380 Identities=31% Similarity=0.438 Sum_probs=331.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHh---------------hhhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVL---------------SKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
++++.++|+++||+|||||||+++|++.. .+.+.+.+...+.+|...+|+++|+|++..+..+++
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 35788999999999999999999998752 122334343345678899999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCCh-------hhHHHHHHHHHcCCCeEEEEEeecCCCCH-H
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~-------qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~ 144 (593)
+++.++|||||||++|.++|..+++.+|++|||+|+++|... |+++|+.++..+++|++||++||||+.++ +
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 999999999999999999999999999999999999987655 99999999999999988888999999853 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcC---------cHHHHHHHhhhhCCCCCCCCC
Q psy8869 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQ---------SILSLSKALDTYIPTPNRAID 210 (593)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~---------~~~~ll~~l~~~l~~~~~~~~ 210 (593)
+.++.+..++.++++.+++....+|++++||++|.+.. .+||.+- ....|+++|.. +++|.+..+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~ 241 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCC
Confidence 56677788899999988875446899999999998743 3898621 02467788775 677888889
Q ss_pred CCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCc
Q psy8869 211 GAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVE 290 (593)
Q Consensus 211 ~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~ 290 (593)
.|++|+|+++|++++.|+|++|+|++|.+++||+|.+.|.+ ..++|++|+.++.++++|.|||+|++.|+|++..+++
T Consensus 242 ~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~ 319 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG--VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIR 319 (458)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT--EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC--ceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccC
Confidence 99999999999999999999999999999999999999854 7899999999999999999999999999999889999
Q ss_pred cceEEecCC--CCCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccccC
Q psy8869 291 RGQVLAKPG--SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMP 355 (593)
Q Consensus 291 ~G~vl~~~~--~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~ 355 (593)
+|++|++++ ++.+++.|+|++.||+++ ++|..||++++|+|+.++.|++..+ +++++|++
T Consensus 320 rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~ 394 (458)
T 1f60_A 320 RGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKS 394 (458)
T ss_dssp TTCEEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCT
T ss_pred ceeEEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCC
Confidence 999999985 467889999999999865 5899999999999999999998633 24668999
Q ss_pred CCEEEEEEEeCceeeeecCC------eEEEeeCCeEEEeeeecchh
Q psy8869 356 GDNVLITVRLINPIAMEEGL------RFAIREGVQQFIQDNLLTKE 395 (593)
Q Consensus 356 gd~~~v~~~~~~p~~~~~~~------r~vlr~~~~~i~~G~v~~~~ 395 (593)
||.+.|+|++.+|+|+++|+ ||+|||+|+|+|+|.|+...
T Consensus 395 g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~ 440 (458)
T 1f60_A 395 GDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVD 440 (458)
T ss_dssp TCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeec
Confidence 99999999999999999997 99999999999999886543
No 6
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=8.5e-60 Score=507.25 Aligned_cols=378 Identities=22% Similarity=0.310 Sum_probs=317.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEeeC
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (593)
.++.++|+++|++|+|||||+++|++... ..+.+.+...+++|....|+++|+|++.....++++
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 57889999999999999999999986621 123344445667899999999999999999999999
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-------CChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HH
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-EE 145 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~ 145 (593)
+..+.|||||||++|..++..+++.+|++|||+|+++| ...|+++|+.++..++++++||++||||+.++ +.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 99999999999999999999999999999999999997 56899999999999999888888999999874 46
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCC--------CCCCCcCcHHHHHHHhhhhCCC--CCCCCCCCeeE
Q psy8869 146 LLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPT--PNRAIDGAFLL 215 (593)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~--------~~w~~~~~~~~ll~~l~~~l~~--~~~~~~~~~~~ 215 (593)
.++++..++.++++.+++....++++++||++|.+.. ++||.+..+.++++.+...+|. |.+..+.|++|
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 6777888899999988886567899999999998754 4799988888888888665654 66778999999
Q ss_pred EEEEEEEeC---CCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecc--------eecceeeecceEEEEeccC
Q psy8869 216 PVEDVFSIS---GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR--------KLLDQGQAGDNIGLLLRGT 284 (593)
Q Consensus 216 ~i~~~~~~~---~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~--------~~~~~a~aG~~v~l~l~~~ 284 (593)
+|+++|+++ +.|+|++|+|.+|+|++||.|.++|++ ..++|++|+.++ .++++|.|||+|+++|+++
T Consensus 270 ~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~ 347 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 347 (483)
T ss_dssp EEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT--EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESC
T ss_pred EEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC--CeEEEEEEEEcCccccccccccccEECCCCEEEEEEEec
Confidence 999999987 589999999999999999999999854 678999999994 8999999999999999999
Q ss_pred CccCCccceEEecCCC--CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec------------CCc
Q psy8869 285 KREDVERGQVLAKPGS--IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNK 350 (593)
Q Consensus 285 ~~~~i~~G~vl~~~~~--~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~ 350 (593)
+..++++||+|++++. +.+++.|+|++.||+++ .+|..||++.+|+|+.++.|++..+ +++
T Consensus 348 ~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~ 422 (483)
T 3p26_A 348 YPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKI 422 (483)
T ss_dssp CGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCC
T ss_pred ccccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCc
Confidence 8899999999999876 67789999999999865 5899999999999999999998632 446
Q ss_pred ccccCCCEEEEEEEe---CceeeeecC------CeEEEeeCCeEEEeeeecc
Q psy8869 351 EMVMPGDNVLITVRL---INPIAMEEG------LRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 351 ~~l~~gd~~~v~~~~---~~p~~~~~~------~r~vlr~~~~~i~~G~v~~ 393 (593)
++|++||.+.|+|++ .+|+|++.+ +||+||++|+|+|+|.|..
T Consensus 423 ~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~ 474 (483)
T 3p26_A 423 RHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISE 474 (483)
T ss_dssp SCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEE
T ss_pred cCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEE
Confidence 689999999999999 789999976 7999999999999998743
No 7
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.1e-59 Score=499.62 Aligned_cols=375 Identities=32% Similarity=0.522 Sum_probs=317.7
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEeeC
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 73 (593)
+++.++|+++||+|||||||+++|++... ..+.+.....+.+|.+++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 46889999999999999999999986521 122333333356889999999999999999999999
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-------CChhhHHHHHHHHHcCCCeEEEEEeecCCCC--H-
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVD--D- 143 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~--~- 143 (593)
++.++|||||||++|..++..+++.+|++|+|+|+++| ...|+++|+.++..+++|++||++||||+.+ +
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999998 7789999999999999987888899999987 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEE
Q psy8869 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVE 218 (593)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~ 218 (593)
++.++.+..+++++++.+++....++++++||++|.+.. .+||.+. .|+++|.. +++|.++.++|++++|+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~---~Ll~~l~~-~~~p~~~~~~~~~~~v~ 238 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGP---TLEEYLDQ-LELPPKPVDKPLRIPIQ 238 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSC---CHHHHHTT-CCCCCCGGGSCCBEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccch---hHHHHHhc-cCCCCCCCCCCeEEEEE
Confidence 456677788999999998876556899999999987642 3788763 67777776 56677777899999999
Q ss_pred EEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecC
Q psy8869 219 DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKP 298 (593)
Q Consensus 219 ~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 298 (593)
++|++++.|++++|+|.+|+|++||.|.+.|.+ ...+|++|+.++.++++|.|||+|+++|+|++..++++||+|+++
T Consensus 239 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~ 316 (435)
T 1jny_A 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG--KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHP 316 (435)
T ss_dssp EEEEETTTEEEEEEECCBSCEETTCEEEEETTT--EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECT
T ss_pred EEEEeCCCcEEEEEEEecCeEEcCCEEEECCce--eEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCC
Confidence 999999999999999999999999999999754 789999999999999999999999999999998999999999998
Q ss_pred C-CCCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccccCCCEEEEEEE
Q psy8869 299 G-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMVMPGDNVLITVR 364 (593)
Q Consensus 299 ~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~gd~~~v~~~ 364 (593)
+ ++.++..|+|++.||+++ ++|..||++++|+|+.++.|++... +++..|++||.+.|+|+
T Consensus 317 ~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~ 391 (435)
T 1jny_A 317 NNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFK 391 (435)
T ss_dssp TSCCCEESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEE
T ss_pred CCCceEeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEE
Confidence 7 467789999999999864 5899999999999999999998633 23568999999999999
Q ss_pred eCceeeeecCC------eEEEeeCCeEEEeeeecch
Q psy8869 365 LINPIAMEEGL------RFAIREGVQQFIQDNLLTK 394 (593)
Q Consensus 365 ~~~p~~~~~~~------r~vlr~~~~~i~~G~v~~~ 394 (593)
+.+|+|+++|. ||+||++|+|+|+|.|+..
T Consensus 392 ~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~ 427 (435)
T 1jny_A 392 PIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 427 (435)
T ss_dssp ESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEE
T ss_pred ECceEEEecCCcCCcCccEEEEECCeEEEEEEEeee
Confidence 99999999997 9999999999999988543
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-60 Score=516.30 Aligned_cols=374 Identities=26% Similarity=0.351 Sum_probs=289.2
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEe
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (593)
...+++++|+++||+|||||||+++|++... ..+.+.+...+++|....|+++|+|++.....++
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 3467899999999999999999999986432 1233444456789999999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-------ChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-------MPQTREHILLARQVGVPYIVVFLNKADMVDD- 143 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-------~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~- 143 (593)
++++.++|||||||++|.++|..+++.+|++|||||+++|. ..||++|+.++..+++|++||++||||++++
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 99999999999999999999999999999999999999864 8999999999999999988888999999874
Q ss_pred HHHHHHHHHHHHHHH-hhcCCCCCCceEEEeccCccccCC-------CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeE
Q psy8869 144 EELLELVEIEIRELL-NKYEFPGNDIPIIKGSAKLALEGD-------TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLL 215 (593)
Q Consensus 144 ~~~~~~~~~~~~~~l-~~~~~~~~~~~vi~~Sa~~g~~~~-------~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 215 (593)
++.++.+..++.+++ +.+++....+|++++||++|.+.. .+||.+. .|++.|...+| |.+..+.|+++
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~---~Lle~l~~~~p-p~~~~~~p~r~ 407 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP---TLLSALDQLVP-PEKPYRKPLRL 407 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSC---CHHHHHHTSCC-CSCTTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchH---HHHHHHHhhcc-ccccccccchh
Confidence 466777888899998 888886667899999999998754 4798764 56777777555 66778899999
Q ss_pred EEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecc-eeeecceEEEEeccCCccCCccceE
Q psy8869 216 PVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLD-QGQAGDNIGLLLRGTKREDVERGQV 294 (593)
Q Consensus 216 ~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~-~a~aG~~v~l~l~~~~~~~i~~G~v 294 (593)
+|+++|++ +.|++++|+|.+|+|++||.|.+.|.+ ..++|++|+.++.+++ +|.|||+|+++|+|++..++++||+
T Consensus 408 ~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~v 484 (592)
T 3mca_A 408 SIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDI 484 (592)
T ss_dssp EEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT--EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCE
T ss_pred eeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCC--ceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEE
Confidence 99999999 999999999999999999999999754 6789999999999999 9999999999999999999999999
Q ss_pred EecCCC-CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec----CCcccccCCCEEEEEEE-eCce
Q psy8869 295 LAKPGS-IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP----KNKEMVMPGDNVLITVR-LINP 368 (593)
Q Consensus 295 l~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----~~~~~l~~gd~~~v~~~-~~~p 368 (593)
|++++. +.+++.|+|++.||+++ .||..||++++|+|+.++.|++.+. .++++|++||.+.|+|+ +.+|
T Consensus 485 l~~~~~~~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p 559 (592)
T 3mca_A 485 LSNYENPVRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGL 559 (592)
T ss_dssp EECSSSCCEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSC
T ss_pred eccCCCCccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCc
Confidence 999876 56689999999999875 5899999999999999999999543 35788999999999999 8899
Q ss_pred eeeec------CCeEEEeeCCeEEEeeeec
Q psy8869 369 IAMEE------GLRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 369 ~~~~~------~~r~vlr~~~~~i~~G~v~ 392 (593)
+|+++ ++||+||++|+|+|+|.|.
T Consensus 560 ~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~ 589 (592)
T 3mca_A 560 FPLCLAEECPALGRFILRRSGDTVAAGIVK 589 (592)
T ss_dssp EEECCTTTCHHHHEEEEESSSSEEEEEEEE
T ss_pred EEEEeccCCCCCCeEEEEECCcEEEEEEEE
Confidence 99954 5899999999999999764
No 9
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-59 Score=511.22 Aligned_cols=378 Identities=22% Similarity=0.310 Sum_probs=331.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhh---------------hhcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS---------------KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
..++.++|+++||+|+|||||+++|++... ..+.+.+...+++|....|+.+|+|++.....+++
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 457889999999999999999999985421 12334444556789999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-------CChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-H
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-------PMPQTREHILLARQVGVPYIVVFLNKADMVDD-E 144 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~ 144 (593)
.++.++|||||||++|.+++..+++.+|++|+|||+++| ...|+++|+.++..++++++|||+||||+.++ +
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 999999999999999999999999999999999999986 46899999999999999988889999999974 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCC--------CCCCCcCcHHHHHHHhhhhCCC--CCCCCCCCee
Q psy8869 145 ELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGD--------TGPLGEQSILSLSKALDTYIPT--PNRAIDGAFL 214 (593)
Q Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~--------~~w~~~~~~~~ll~~l~~~l~~--~~~~~~~~~~ 214 (593)
..++.+..++..+++.+++....++++++||++|.+.. ++||.+..+.++++.+...+|. |.+..+.|++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 56777888899999988886557899999999998753 6899988877777776544544 5567889999
Q ss_pred EEEEEEEEeC---CCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecc--------eecceeeecceEEEEecc
Q psy8869 215 LPVEDVFSIS---GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR--------KLLDQGQAGDNIGLLLRG 283 (593)
Q Consensus 215 ~~i~~~~~~~---~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~--------~~~~~a~aG~~v~l~l~~ 283 (593)
|+|+++|+++ +.|+|++|+|.+|+|++||.|.++|++ ..++|++|++++ .++++|.|||+|+++|++
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~--~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~ 480 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 480 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT--EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESS
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC--ceEEEEEEEEcccccccccccccceecCCCcceEEeee
Confidence 9999999988 589999999999999999999999754 678999999984 899999999999999999
Q ss_pred CCccCCccceEEecCCC--CCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec------------CC
Q psy8869 284 TKREDVERGQVLAKPGS--IKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KN 349 (593)
Q Consensus 284 ~~~~~i~~G~vl~~~~~--~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~ 349 (593)
++..++++|++|++++. +.+++.|+|++.||+++ .+|..|+++++|||+.++.|++..+ .+
T Consensus 481 ~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~ 555 (611)
T 3izq_1 481 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKK 555 (611)
T ss_dssp CCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTC
T ss_pred ccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccC
Confidence 98899999999999876 67789999999999865 5899999999999999999998632 34
Q ss_pred cccccCCCEEEEEEEe---CceeeeecC------CeEEEeeCCeEEEeeeec
Q psy8869 350 KEMVMPGDNVLITVRL---INPIAMEEG------LRFAIREGVQQFIQDNLL 392 (593)
Q Consensus 350 ~~~l~~gd~~~v~~~~---~~p~~~~~~------~r~vlr~~~~~i~~G~v~ 392 (593)
+.+|++||.+.|+|++ .+|+|++.+ +||+||++|+|+|+|.|+
T Consensus 556 ~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~ 607 (611)
T 3izq_1 556 IRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKIS 607 (611)
T ss_dssp SCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEE
T ss_pred ccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEE
Confidence 5689999999999999 789999986 699999999999999874
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=3.3e-59 Score=499.40 Aligned_cols=372 Identities=26% Similarity=0.372 Sum_probs=289.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhh---------------hcCCccccccccCCChhhhhcCceEEeeeeEEee
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSK---------------KFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 72 (593)
..++.++|+++||+|||||||+++|+..... .++......+.+|..+.|+++|+|++..+..+++
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3578899999999999999999999864311 1222222345689999999999999999889999
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-------hhhHHHHHHHHHcCCCeEEEEEeecCCCC--H
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-------PQTREHILLARQVGVPYIVVFLNKADMVD--D 143 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~--~ 143 (593)
+++.++|||||||++|.++|..+++.+|++|||+|+++|.+ .||++|+.++..+++|++||++||||+.+ +
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 99999999999999999999999999999999999999863 79999999999999998888899999964 2
Q ss_pred -HHHHHHHHHHHHHHHhhc-CCC-CCCceEEEeccCccccC-------CCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCe
Q psy8869 144 -EELLELVEIEIRELLNKY-EFP-GNDIPIIKGSAKLALEG-------DTGPLGEQSILSLSKALDTYIPTPNRAIDGAF 213 (593)
Q Consensus 144 -~~~~~~~~~~~~~~l~~~-~~~-~~~~~vi~~Sa~~g~~~-------~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 213 (593)
++.++.+..++.++++.+ ++. ...++++++||++|.+. .++||.+.. |++.|.. ++.|.++.+.||
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~---L~~~l~~-i~~~~~~~~~p~ 274 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPS---LLEYLDS-MTHLERKVNAPF 274 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCC---HHHHHHH-CCCCHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchh---HHHHHHh-CCCCcCCCCCCc
Confidence 456777888889998887 764 23589999999999773 348998764 5555554 677777778999
Q ss_pred eEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec-ceecceeeecceEEEEeccCCccCCccc
Q psy8869 214 LLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF-RKLLDQGQAGDNIGLLLRGTKREDVERG 292 (593)
Q Consensus 214 ~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~-~~~~~~a~aG~~v~l~l~~~~~~~i~~G 292 (593)
+++|+++|+ +.|++++|+|.+|+|++||.|.+.|.+ ..++|++|+.+ +.++++|.|||+|+++|+| +..++++|
T Consensus 275 ~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG 349 (467)
T 1r5b_A 275 IMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPIN--QTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTG 349 (467)
T ss_dssp EEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTT--EEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTT
T ss_pred EEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCC--eeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCce
Confidence 999999986 589999999999999999999999854 77899999998 8999999999999999999 88999999
Q ss_pred eEEecCC-CCCcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec------------CCcccccCCCEE
Q psy8869 293 QVLAKPG-SIKPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP------------KNKEMVMPGDNV 359 (593)
Q Consensus 293 ~vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~l~~gd~~ 359 (593)
|+|++++ ++.+++.|+|++.||+++ ++|..||++++|+++.++.|++..+ .++++|++||.+
T Consensus 350 ~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~ 424 (467)
T 1r5b_A 350 YVLTSTKNPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKI 424 (467)
T ss_dssp CEEECSSSCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBC
T ss_pred EEEeCCCCCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEE
Confidence 9999987 467789999999999875 5799999999999999999988521 135689999999
Q ss_pred EEEEEeCceeeeecCC------eEEEeeCCeEEEeeeecc
Q psy8869 360 LITVRLINPIAMEEGL------RFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 360 ~v~~~~~~p~~~~~~~------r~vlr~~~~~i~~G~v~~ 393 (593)
.|+|++.+|+|+++|. ||+|||+|+|+|+|.|+.
T Consensus 425 ~v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~ 464 (467)
T 1r5b_A 425 IAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVK 464 (467)
T ss_dssp CEEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEE
T ss_pred EEEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEE
Confidence 9999999999999993 999999999999998753
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.9e-56 Score=469.91 Aligned_cols=370 Identities=23% Similarity=0.301 Sum_probs=310.5
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhh---------------c--CCccccccccCCChhhhhcCceEEeeeeEEe
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKK---------------F--GGEAKSYDQIDAAPEEKARGITINTAHIEYE 71 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---------------~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 71 (593)
.++.++|+++||+|||||||+++|++..... + +......+.+|.+++|+++|+|++..+..++
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 4677999999999999999999998764111 0 0111112347888999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHH
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELV 150 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~ 150 (593)
.++..+.|||||||++|..++..++..+|++|||+|++++.+.|+++|+.++..++++++||++||+|+.++ ++.++.+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888888999999874 4556667
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCccccCC-----CCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCC
Q psy8869 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGD-----TGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG 225 (593)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~-----~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~ 225 (593)
..++.++++.+++....++++++||++|.+.. .+||.+..+.++++. ++.|.+..+.|++++|+++++..+
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~----i~~~~~~~~~~~~~~v~~v~~~~~ 256 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET----VEIASDRNYTDLRFPVQYVNRPNL 256 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH----SCCTTCCCSSSCEEECCEEECSSS
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc----CCCcccCCCCCcEEEEEEEeccCC
Confidence 77888888887743346899999999997743 389987655554443 566777788999999999998777
Q ss_pred CcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCC-Ccc
Q psy8869 226 RGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI-KPH 304 (593)
Q Consensus 226 ~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~ 304 (593)
.|+.+.|+|.+|+|++||.|.+.|.+ ..++|++|+.++.++++|.|||+|+++++ +..++++||+|++++.+ .++
T Consensus 257 ~~~g~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~~~~~~~ 332 (434)
T 1zun_B 257 NFRGFAGTLASGIVHKGDEIVVLPSG--KSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVS 332 (434)
T ss_dssp SCCEEEEECCBSCEETTCEEEETTTC--CEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETTSCCCEE
T ss_pred CceEEEEEEecceEeCCCEEEEecCC--eEEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCCCCCCcc
Confidence 77889999999999999999999754 67899999999999999999999999998 45689999999998764 778
Q ss_pred cEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEecC-----------CcccccCCCEEEEEEEeCceeeeec
Q psy8869 305 KHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPK-----------NKEMVMPGDNVLITVRLINPIAMEE 373 (593)
Q Consensus 305 ~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~gd~~~v~~~~~~p~~~~~ 373 (593)
+.|+|++.||+. .+|..||++++|+|+.++.|++.... +++.|++||.+.|+|++.+|+|+++
T Consensus 333 ~~f~a~~~~l~~------~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~ 406 (434)
T 1zun_B 333 DAFDAMLVWMAE------EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDG 406 (434)
T ss_dssp EEEEEEEEECCS------SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCC
T ss_pred cEEEEEEEEecc------ccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcc
Confidence 999999999963 47999999999999999999986432 4678999999999999999999999
Q ss_pred CC------eEEEee--CCeEEEeeeec
Q psy8869 374 GL------RFAIRE--GVQQFIQDNLL 392 (593)
Q Consensus 374 ~~------r~vlr~--~~~~i~~G~v~ 392 (593)
|. ||+||| +++|||+|.|.
T Consensus 407 ~~~~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 407 YSSNRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp TTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred cccCCccceEEEEECCCCcEEEEEEEe
Confidence 86 999986 48999999873
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.6e-54 Score=448.19 Aligned_cols=333 Identities=17% Similarity=0.244 Sum_probs=290.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMI 93 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~ 93 (593)
+|+++||+|+|||||+++|+ ++|+|++..+..++++++.++|||||||++|.+++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999986 568999999999999999999999999999999999
Q ss_pred HhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe-ecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q psy8869 94 TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN-KADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (593)
Q Consensus 94 ~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN-K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ 172 (593)
.+++.+|++|||+| +.|.+.||++|+.++..+++|.+||++| |||+ +. +..+.+..+++++++.+++ ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 8999999999999999999998677789 9999 64 4455566778888877654 3689999
Q ss_pred --eccCccccCCCCCCCcCcHHHHHHHhhhhCCCC---CCC-CCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEE
Q psy8869 173 --GSAKLALEGDTGPLGEQSILSLSKALDTYIPTP---NRA-IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELE 246 (593)
Q Consensus 173 --~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~---~~~-~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~ 246 (593)
+||+++ .|. .++++|++.|.+.++.+ ..+ ...|++++|+++|++++.|++++|+|.+|++++||+|.
T Consensus 154 ~~~SA~~~-----~~g--~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~ 226 (370)
T 2elf_A 154 LNTNKSAK-----NPF--EGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTK 226 (370)
T ss_dssp CCCCTTSS-----STT--TTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEE
T ss_pred cccccccC-----cCC--CCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEE
Confidence 999993 132 68999999998876643 112 34568888999999999999999999999999999999
Q ss_pred EeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEEecCCCCCcccEEEEEEEEeecCCCCCCcccc
Q psy8869 247 IIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKPHKHFTGEIYALSKDEGGRHTPFF 326 (593)
Q Consensus 247 i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~ 326 (593)
+.|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++||+|++ ++ ++++.|+|++.|++++ ++|.
T Consensus 227 ~~p~~--~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~-----~~i~ 297 (370)
T 2elf_A 227 IFPLD--RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT-----KKIE 297 (370)
T ss_dssp EETTT--EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS-----CCBC
T ss_pred ECCCC--cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC-----CCCC
Confidence 99754 78899999999999999999999999999998899999999999 66 7889999999999874 5899
Q ss_pred CCceeEEEEEeeeEEEEEEecC----CcccccCCCEEEEEEEeCceeeeecCCeEEEeeCC---eEEEeeee
Q psy8869 327 SNYRPQFYFRTTDVTGSIELPK----NKEMVMPGDNVLITVRLINPIAMEEGLRFAIREGV---QQFIQDNL 391 (593)
Q Consensus 327 ~g~~~~~~~~~~~~~~~i~~~~----~~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~~~---~~i~~G~v 391 (593)
.||++.+|+|+.++.|++.... +.+.+.+||.+.|+|++.+|+|+++|+||+||+++ +|+|+|.+
T Consensus 298 ~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~~~~~~~tig~G~~ 369 (370)
T 2elf_A 298 PASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFS 369 (370)
T ss_dssp TTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECTTSSSCEEEEEEE
T ss_pred CCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEECCCCCEEEEEEEe
Confidence 9999999999999999997542 12356799999999999999999999999999865 69999965
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=2.4e-56 Score=478.29 Aligned_cols=361 Identities=27% Similarity=0.437 Sum_probs=304.0
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
....+.++|+++||+|||||||+++|++... ...+|...+|+++|+|++..+..++++++.++|||||||+
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 3445789999999999999999999985421 1247888999999999999988899999999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc-CCCC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY-EFPG 165 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~-~~~~ 165 (593)
+|.+++..+++.+|++|||+|+++|.+.||++|+.++..+++|. ||++||+|+.+. +.++.+.+++.++++.. ++.
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~- 161 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGT-EEIKRTEMIMKSILQSTHNLK- 161 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCH-HHHHHHHHHHHHHHHHSSSGG-
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccc-hhHHHHHHHHHHHHhhhcccc-
Confidence 99999999999999999999999999999999999999999998 567899999984 45566777888888876 553
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC--CCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP--NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGE 243 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~--~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd 243 (593)
.+|++++||++| .++++|+++|.+.++.| .++.+.|++++|+++|.+++.|+|++|+|.+|.+++||
T Consensus 162 -~~~ii~vSA~~g----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd 230 (482)
T 1wb1_A 162 -NSSIIPISAKTG----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGD 230 (482)
T ss_dssp -GCCEEECCTTTC----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSE
T ss_pred -cceEEEEECcCC----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCC
Confidence 579999999998 68999999998876555 66778899999999999999999999999999999999
Q ss_pred EEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCCccceEE-ecCCCCCcccEEEEEEEEeecCCCCCC
Q psy8869 244 ELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQVL-AKPGSIKPHKHFTGEIYALSKDEGGRH 322 (593)
Q Consensus 244 ~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~i~~l~~~~~~~~ 322 (593)
.+.+.|.+ ..++|++|+.++.++++|.|||+|++++++++..++++||+| +.++++++++.|+|++.|+++. .
T Consensus 231 ~v~~~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~----~ 304 (482)
T 1wb1_A 231 ELKVLPIN--MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF----K 304 (482)
T ss_dssp EECCTTTC--CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSC----C
T ss_pred EEEECCCC--cEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccC----C
Confidence 99998754 568999999999999999999999999999988899999999 7777788899999999999863 2
Q ss_pred ccccCCceeEEEEEeeeEEEEEEecC-C----------cccccCCCEEEEEEEeCceeeeecCCeEEEee---C---CeE
Q psy8869 323 TPFFSNYRPQFYFRTTDVTGSIELPK-N----------KEMVMPGDNVLITVRLINPIAMEEGLRFAIRE---G---VQQ 385 (593)
Q Consensus 323 ~~i~~g~~~~~~~~~~~~~~~i~~~~-~----------~~~l~~gd~~~v~~~~~~p~~~~~~~r~vlr~---~---~~~ 385 (593)
.+|..|+++.+|+|+.++.|++.... . ++.|++||.+.|+|+|.+|+|+++++||+||+ + ++|
T Consensus 305 ~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~t 384 (482)
T 1wb1_A 305 YNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRI 384 (482)
T ss_dssp SCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCC
T ss_pred cccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceE
Confidence 57999999999999999999987554 1 46799999999999999999999999999999 4 799
Q ss_pred EEeeeecchhh
Q psy8869 386 FIQDNLLTKEI 396 (593)
Q Consensus 386 i~~G~v~~~~~ 396 (593)
+|+|.|+....
T Consensus 385 vg~G~v~~~~~ 395 (482)
T 1wb1_A 385 XGHGLIEEFKP 395 (482)
T ss_dssp CCBCCEEECCC
T ss_pred eeEEEEEeccc
Confidence 99999866533
No 14
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.1e-53 Score=447.06 Aligned_cols=350 Identities=31% Similarity=0.450 Sum_probs=283.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee---------------
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--------------- 72 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--------------- 72 (593)
..++.++|+++||+|||||||+++|++. ..+.+.+|+++|+|++..+..+..
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 3568899999999999999999999742 256788899999999876543322
Q ss_pred C--------CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 73 K--------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 73 ~--------~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
+ .+.++|||||||++|.++|..++..+|++|||+|+++|. ..||++|+..+..++++++||++||+|+.++
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 1 267999999999999999999999999999999999987 8999999999999999878888999999875
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEe
Q psy8869 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (593)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (593)
+.. +....++.++++.... ..+|++++||++| .++++|+++|...++.|.++.+.|++++|+++|++
T Consensus 151 ~~~-~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v 217 (408)
T 1s0u_A 151 KQA-EENYEQIKEFVKGTIA--ENAPIIPISAHHE----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDI 217 (408)
T ss_dssp TTT-TTHHHHHHHHHTTSTT--TTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHH-HHHHHHHHHHHhhcCC--CCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEee
Confidence 321 1122355666665432 3689999999998 68999999999989988888899999999999988
Q ss_pred CC--------CcEEEEEEEEeeeEecCCEEEEeecCC----------ceEEEEEEEEecceecceeeecceEEEEec---
Q psy8869 224 SG--------RGTVVTGRVERGIVRVGEELEIIGIKD----------TVKTTCTGVEMFRKLLDQGQAGDNIGLLLR--- 282 (593)
Q Consensus 224 ~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~~----------~~~~~v~si~~~~~~~~~a~aG~~v~l~l~--- 282 (593)
++ +|+|++|+|.+|+|++||.|.+.|... ...++|++|+.++.++++|.|||+|++++.
T Consensus 218 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~ 297 (408)
T 1s0u_A 218 NKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDP 297 (408)
T ss_dssp CCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCG
T ss_pred cCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCc
Confidence 65 688999999999999999999988521 136899999999999999999999999986
Q ss_pred cCCccCCccceEEecCCCCC-cccEEEEEEEEeecCCCCC----CccccCCceeEEEEEeeeEEEEEEecCCcccccCCC
Q psy8869 283 GTKREDVERGQVLAKPGSIK-PHKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGD 357 (593)
Q Consensus 283 ~~~~~~i~~G~vl~~~~~~~-~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd 357 (593)
+++..++++|++|++++.++ .++.|+|++.||+++.+++ ..+|..|+++++|+|+.++.|++..... |
T Consensus 298 ~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~ 370 (408)
T 1s0u_A 298 YLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG-------D 370 (408)
T ss_dssp GGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET-------T
T ss_pred ccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC-------C
Confidence 67778999999999998754 4689999999998753332 3689999999999999999999975542 3
Q ss_pred EEEEEEEeCceeeeecCCeEEEee----CCeEEEeeeec
Q psy8869 358 NVLITVRLINPIAMEEGLRFAIRE----GVQQFIQDNLL 392 (593)
Q Consensus 358 ~~~v~~~~~~p~~~~~~~r~vlr~----~~~~i~~G~v~ 392 (593)
.|+++|.+|+|+++|+||+||+ +++|+|.|.|.
T Consensus 371 --~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 371 --IADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp --EEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred --EEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 6788899999999999999998 67999999763
No 15
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1.1e-52 Score=443.54 Aligned_cols=350 Identities=30% Similarity=0.427 Sum_probs=294.4
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--------------
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-------------- 73 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 73 (593)
..++.++|+++||+|||||||+++|++. ..+.+++|+++|+|++..+..+...
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 3578899999999999999999999842 2567788999999998765543321
Q ss_pred ---------CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 74 ---------ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 74 ---------~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
...++|||||||++|.++|..++..+|++|||+||++|. ..||++|+.++..++++++||++||||+.++
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 267999999999999999999999999999999999997 8999999999999999888888999999986
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEe
Q psy8869 144 EELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSI 223 (593)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 223 (593)
+.. +....++.++++.... ..+|++++||++| .++++|+++|...++.|.++.+.|++++|+++|.+
T Consensus 153 ~~~-~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v 219 (410)
T 1kk1_A 153 EKA-LENYRQIKEFIEGTVA--ENAPIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDV 219 (410)
T ss_dssp HHH-HHHHHHHHHHHTTSTT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHH-HHHHHHHHHHHHhcCc--CCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEec
Confidence 432 2233466677765432 3689999999998 68999999999989988888899999999999987
Q ss_pred CC--------CcEEEEEEEEeeeEecCCEEEEeecCC----c------eEEEEEEEEecceecceeeecceEEEEec---
Q psy8869 224 SG--------RGTVVTGRVERGIVRVGEELEIIGIKD----T------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR--- 282 (593)
Q Consensus 224 ~~--------~G~v~~G~v~~G~l~~gd~v~i~p~~~----~------~~~~v~si~~~~~~~~~a~aG~~v~l~l~--- 282 (593)
++ +|+|++|+|.+|+|++||.|.+.|... + ..++|++|+.++.++++|.|||+|++.++
T Consensus 220 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~ 299 (410)
T 1kk1_A 220 NKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDP 299 (410)
T ss_dssp SCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCG
T ss_pred cCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCc
Confidence 54 678999999999999999999988531 0 25899999999999999999999999986
Q ss_pred cCCccCCccceEEecCCCCC-cccEEEEEEEEeecCCCCC----CccccCCceeEEEEEeeeEEEEEEecCCcccccCCC
Q psy8869 283 GTKREDVERGQVLAKPGSIK-PHKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGD 357 (593)
Q Consensus 283 ~~~~~~i~~G~vl~~~~~~~-~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd 357 (593)
+++..++.+|++|++++.++ .++.|+|++.||+++.+++ .++|..|+++++|+|+.++.|++..... |
T Consensus 300 ~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~ 372 (410)
T 1kk1_A 300 YLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK-------D 372 (410)
T ss_dssp GGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET-------T
T ss_pred ccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC-------C
Confidence 56667899999999998754 4689999999998753322 3689999999999999999999975432 3
Q ss_pred EEEEEEEeCceeeeecCCeEEEee----CCeEEEeeeec
Q psy8869 358 NVLITVRLINPIAMEEGLRFAIRE----GVQQFIQDNLL 392 (593)
Q Consensus 358 ~~~v~~~~~~p~~~~~~~r~vlr~----~~~~i~~G~v~ 392 (593)
.|+++|.+|+|+++|+||+||+ +++|+|.|.|.
T Consensus 373 --~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 373 --EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp --EEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred --EEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 6788899999999999999999 67999999763
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.1e-50 Score=427.03 Aligned_cols=361 Identities=25% Similarity=0.346 Sum_probs=287.7
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEE-----eeCCeEEEEEec
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY-----ETKARHYAHVDC 82 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~~~iiDt 82 (593)
..++.++|+++||+|||||||+++|++.......+.... ........+..++.+.+...... ....+.++||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 457889999999999999999999986422111000000 00000111112233322211111 122378999999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
|||++|.++|..+++.+|++|+|+|++++. +.|+++|+.++..++++++|+++||+|+.++++. +....++.++++..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~-~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA-LSQYRQIKQFTKGT 161 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-HHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH-HHHHHHHHHHHHhh
Confidence 999999999999999999999999999987 8999999999999998778888999999987433 33445677777665
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCC--------CcEEEEEE
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG--------RGTVVTGR 233 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~--------~G~v~~G~ 233 (593)
+. ..+|++++||++| .++++|+++|.+.++.|.++.+.|++++|+++|.+.+ +|+|++|+
T Consensus 162 ~~--~~~~ii~vSA~~g----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~ 229 (403)
T 3sjy_A 162 WA--ENVPIIPVSALHK----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 229 (403)
T ss_dssp TT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEE
T ss_pred CC--CCCEEEEEECCCC----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEE
Confidence 54 3689999999998 7899999999998998888889999999999999877 79999999
Q ss_pred EEeeeEecCCEEEEeecCCc----------eEEEEEEEEecceecceeeecceEEEEec---cCCccCCccceEEecCCC
Q psy8869 234 VERGIVRVGEELEIIGIKDT----------VKTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGS 300 (593)
Q Consensus 234 v~~G~l~~gd~v~i~p~~~~----------~~~~v~si~~~~~~~~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~ 300 (593)
|.+|++++||+|.+.|.... ..++|++|+.++.++++|.|||+|+++|+ +++..++.+||+|++++.
T Consensus 230 v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~ 309 (403)
T 3sjy_A 230 IIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADA 309 (403)
T ss_dssp EEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTC
T ss_pred EEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCC
Confidence 99999999999999885420 15799999999999999999999999986 566789999999999987
Q ss_pred CC-cccEEEEEEEEeecCCCCC----CccccCCceeEEEEEeeeEEEEEEecCCcccccCCCEEEEEEEeCceeeeecCC
Q psy8869 301 IK-PHKHFTGEIYALSKDEGGR----HTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITVRLINPIAMEEGL 375 (593)
Q Consensus 301 ~~-~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~gd~~~v~~~~~~p~~~~~~~ 375 (593)
++ .++.|+|++.||++..+++ ..+|..|+++.+|+|+.++.|++...++ + .++++|.+|+|++.|+
T Consensus 310 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-------~--~~~~~l~~p~~~~~g~ 380 (403)
T 3sjy_A 310 EVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-------D--EIEVELRRPVAVWSNN 380 (403)
T ss_dssp CCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-------S--EEEEEEEEEEECCSSS
T ss_pred CCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-------c--eEEEEeCCcEeeccCC
Confidence 54 4689999999998753332 4689999999999999999999986543 2 5789999999999999
Q ss_pred -eEEE-eeCC---eEEEeeee
Q psy8869 376 -RFAI-REGV---QQFIQDNL 391 (593)
Q Consensus 376 -r~vl-r~~~---~~i~~G~v 391 (593)
||+| |+.+ +++|.|.|
T Consensus 381 ~r~~i~r~~~~~~r~~g~g~i 401 (403)
T 3sjy_A 381 IRTVISRQIAGRWRMIGWGLV 401 (403)
T ss_dssp CEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEeCCcEEEEEEEEE
Confidence 9998 6544 79999976
No 17
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=100.00 E-value=2.7e-38 Score=293.14 Aligned_cols=176 Identities=54% Similarity=1.021 Sum_probs=55.2
Q ss_pred cceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhc
Q psy8869 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKN 497 (593)
Q Consensus 418 ~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~ 497 (593)
+++|||+||++|+|.++++.|++++...++++.++++|+|+++..++++|+++.+.+|+|||||||+++++++.|+.+++
T Consensus 6 ~~~WYvv~t~sg~E~kv~~~L~~~~~~~~~~~~~~ev~vP~~~~~~~~~Gk~~~~~~~lfPGYvFV~~~~~~~~~~~vr~ 85 (181)
T 2jvv_A 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRS 85 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEEECChHHHHHHHHHHHHHhCCccccceEEEeeEEEEEEecCCEEEEEEeeCCCCEEEEEEEcCcchhhhhhc
Confidence 46899999999999999999999999899999999999999999999999999999999999999999998899999999
Q ss_pred cCCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEec
Q psy8869 498 TKKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIF 577 (593)
Q Consensus 498 ~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~ 577 (593)
++||.+|+++.++.|.|||++||+.|+..++.+...+.....|.+||+|+|++|||+|++|.|.+++.++++++|.+++|
T Consensus 86 t~gV~~fvg~~~~~P~pl~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~if 165 (181)
T 2jvv_A 86 VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 (181)
T ss_dssp -------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEET
T ss_pred CCCceEEccCCCCeEeEcCHHHHHHHHHHhhccccCCCccccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEEC
Confidence 99999999833678999999999999988765422334455789999999999999999999999999888999999999
Q ss_pred CcceEEeeccCceeeC
Q psy8869 578 GRATPVELEFNQVEKI 593 (593)
Q Consensus 578 g~~~~v~~~~~~l~~~ 593 (593)
||.++|+++.++|+++
T Consensus 166 gr~t~vel~~~qvek~ 181 (181)
T 2jvv_A 166 GRATPVELDFSQVEKA 181 (181)
T ss_dssp TEEEEEEECTTTEEEC
T ss_pred CCCEEEEECHHHEEEC
Confidence 9999999999999985
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=5.5e-35 Score=316.86 Aligned_cols=270 Identities=24% Similarity=0.290 Sum_probs=202.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-----CeEEEEEecCC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCPG 84 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG 84 (593)
+...||+++||+|||||||+++|+.......... .....+|..+.|+++|+|+......+.+. .+.++||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 4678999999999999999999987543221111 12356899999999999998766655443 36788999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
|.+|..++.++++.+|++|||+|+++|...||.+++..+...++| +|+++||||+.+.+ .+.+..++. +.+++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~---~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIE---EVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHH---HTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHH---HhhCCC
Confidence 999999999999999999999999999999999999999999999 55568999998642 122222333 334443
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCE
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~ 244 (593)
..+++++||++| .++.+|+++|.+.+|.|..+.+.|+++.|.+++..++.|++++|+|.+|++++||.
T Consensus 157 --~~~vi~vSAktg----------~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 157 --PEEAILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp --GGGCEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred --cccEEEEEeecC----------CCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 346999999998 78999999999999999888899999999999999999999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEec---ceecceeeecceEEEEeccC-CccCCccceEEecCCCC
Q psy8869 245 LEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGT-KREDVERGQVLAKPGSI 301 (593)
Q Consensus 245 v~i~p~~~~~~~~v~si~~~---~~~~~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~~ 301 (593)
|++.+.+ ...+|.+|... +.+++++.|||.+.+. .|+ +..++++||+|++++.+
T Consensus 225 I~~~~~~--~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 225 IMLMSTG--KEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp EEETTTT--EEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSSC
T ss_pred EEecccc--ceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCCc
Confidence 9998644 55677777754 3688999999966664 565 35689999999987543
No 19
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.6e-35 Score=320.54 Aligned_cols=275 Identities=23% Similarity=0.312 Sum_probs=200.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhh------cCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK------FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~------~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
.+..||+|+||+|||||||+.+|+...... ..+.......+|..+.|++||+||..+...++++++.++|||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 467899999999999999999998543221 11222223568999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHHH-----
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRE----- 156 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~----- 156 (593)
||.+|..++.++++.+|+||+||||.+|++.||+..+..+...++|.++ +|||||+... .+..+++...+..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~-fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMT-FVNKMDREALHPLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE-EEECTTSCCCCHHHHHHHHHHHHTSEEEES
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEE-EEecccchhcchhHhhhhhhhhcCCceEeE
Confidence 9999999999999999999999999999999999999999999999766 5799998754 3333333322210
Q ss_pred --------------------------------------------------------------HHhhcC--------CCCC
Q psy8869 157 --------------------------------------------------------------LLNKYE--------FPGN 166 (593)
Q Consensus 157 --------------------------------------------------------------~l~~~~--------~~~~ 166 (593)
++.... ..+.
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 000000 0123
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC---------CCCCCeeEEEEEEEEe---CCCcEEEEEEE
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR---------AIDGAFLLPVEDVFSI---SGRGTVVTGRV 234 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~---------~~~~~~~~~i~~~~~~---~~~G~v~~G~v 234 (593)
.+|+++.||+++ .|+..||+.+..++|+|.. +.+.||...|.++... +..|.+.++||
T Consensus 268 ~~PV~~gSA~~~----------~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV 337 (548)
T 3vqt_A 268 LTPVFFGSAINN----------FGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRI 337 (548)
T ss_dssp EEEEEECBGGGT----------BSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEE
T ss_pred cceeeecccccC----------cCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEE
Confidence 479999999997 6899999999999998854 3467899888888765 68899999999
Q ss_pred EeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCCCC
Q psy8869 235 ERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSI 301 (593)
Q Consensus 235 ~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 301 (593)
.||+|+.||.|+... .+.+.++..+... +.++++|.|||+|++. ++ .+++.||+|++.+.+
T Consensus 338 ~sG~l~~g~~v~~~~--~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 338 CSGTFTRGMRLKHHR--TGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP--NH--GTIKIGDTFTESKEV 402 (548)
T ss_dssp EESCEETTCEEEETT--TTEEEECTTCEECCCSSCCSSCEECTTCEEEEE--CS--SCCCTTCEEESSSSC
T ss_pred ecceecCCCEEEeec--cccccccchhhhhccccccccCEEecCCEEEec--CC--ccCccCCEecCCCCc
Confidence 999999999998763 3456677666654 3578999999999883 43 578899999987643
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.5e-34 Score=311.40 Aligned_cols=270 Identities=24% Similarity=0.316 Sum_probs=197.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-----CeEEEEEecCC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-----ARHYAHVDCPG 84 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~~~iiDtpG 84 (593)
+...||+++||+|||||||+++|+.......... ....++|..+.|+++|+|+......+.+. .+.++||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCC
Confidence 3578999999999999999999987543221111 12356899999999999999877666553 36889999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
|.+|..++..+++.+|++|+|+|+++|...||.+++..+...++|. |+++||+|+.+.+ .+.+..++.+ .+++.
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipi-IvViNKiDl~~a~--~~~v~~ei~~---~lg~~ 154 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV-VPVLNKIDLPAAD--PERVAEEIED---IVGID 154 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEE-EEEEECTTSTTCC--HHHHHHHHHH---HTCCC
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEeeeccCccccc--HHHHHHHHHH---HhCCC
Confidence 9999999999999999999999999999999999999999999995 5568999998742 1222333333 33443
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCE
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~ 244 (593)
..+++++||++| .++.+|+++|.+.+|.|..+.+.|+++.|.+++..++.|.++.|++.+|+|+.||.
T Consensus 155 --~~~vi~vSAktg----------~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~ 222 (599)
T 3cb4_D 155 --ATDAVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDK 222 (599)
T ss_dssp --CTTCEEECTTTC----------TTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCE
T ss_pred --cceEEEeecccC----------CCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCE
Confidence 235899999998 78999999999999999888899999999999999999999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEec---ceecceeeecceEEEEeccCC-ccCCccceEEecCCCC
Q psy8869 245 LEIIGIKDTVKTTCTGVEMF---RKLLDQGQAGDNIGLLLRGTK-REDVERGQVLAKPGSI 301 (593)
Q Consensus 245 v~i~p~~~~~~~~v~si~~~---~~~~~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~~ 301 (593)
+.+.+++ ...+|.+|... ..+++++.|||.+.+ +.+++ ..++++||+|++++.+
T Consensus 223 v~~~~~~--~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~~ 280 (599)
T 3cb4_D 223 VKVMSTG--QTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARNP 280 (599)
T ss_dssp EEETTTC--CEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSSC
T ss_pred EEecccc--ceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCCc
Confidence 9998754 45567777654 468899999996555 45653 5689999999976543
No 21
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=100.00 E-value=1e-33 Score=270.39 Aligned_cols=175 Identities=37% Similarity=0.724 Sum_probs=103.1
Q ss_pred cccceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEe------------------------------
Q psy8869 416 NNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVK------------------------------ 465 (593)
Q Consensus 416 ~~~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~------------------------------ 465 (593)
...++||++||++|+|.++.+.|++++...++++..+++|+|+++....+
T Consensus 8 ~~~~~WYvl~t~sg~E~kv~~~L~~~i~~~g~~~~~~~v~vP~e~~~~I~~~G~~~~~~~L~~~~~~i~i~~~~g~n~i~ 87 (248)
T 1m1h_A 8 ELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFR 87 (248)
T ss_dssp CCCCEEEEEEECTTCHHHHHHHHHHHHHHTTCGGGEEEEECSSEEEEEEEETTEEEEEEESSSSCEEEEEECSSSEEEEE
T ss_pred ccCCcEEEEEEECCHHHHHHHHHHHHHHhCCCcceeeEEEeeeEEEEEEEECCEEEEEEcCCCCccEEEEecCCceEEEE
Confidence 34568999999999999999999999999999999999999999766554
Q ss_pred -------------------------cCce-----------EEEEecccCcEEEEEEeeChhhhhhhhccCCeeEeccCCC
Q psy8869 466 -------------------------KNQK-----------SVIKKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIGGKS 509 (593)
Q Consensus 466 -------------------------~g~~-----------~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~v~~~l~~~~ 509 (593)
.|++ ....+|+|||||||+++++++.|+.++++++|.+|++. +
T Consensus 88 I~dG~irv~es~cPdqCv~~G~I~k~G~~IvCLPnrv~I~I~~~~~lfPGYvfv~~~~~d~~~~~v~~tp~V~~fv~~-g 166 (248)
T 1m1h_A 88 IENGEVKVVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMV-G 166 (248)
T ss_dssp ECSSCEEEEECSTTCGGGGSCCBCSTTCEEEETTTTEEEEEEEECSSSTTEEEEEECCCHHHHHHHHTSTTEEEECEE-T
T ss_pred EECCEEEEEECCCChhhhcccccccCCCEEEecCCeEEEEEeccccceeeEEEEEEeccHHHHHHHhcCCCeEEEEcC-C
Confidence 6766 77889999999999999999999999999999999997 7
Q ss_pred CCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCc
Q psy8869 510 NRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQ 589 (593)
Q Consensus 510 ~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~ 589 (593)
++|.||+++|++.|++.++.+.. + ....|.+||+|+|++|||+|++|.|.++++++++++|.+++|||.++|+++.++
T Consensus 167 ~~P~pl~~~ev~~i~~~~~~~~~-~-~~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~~~ 244 (248)
T 1m1h_A 167 GKPVPLKEEEVQNILNQIKRGVK-P-SKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQ 244 (248)
T ss_dssp TEECEECHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred CEEeEeCHHHHHHHHHhhccccC-c-ccccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcHHH
Confidence 89999999999999998876432 2 256799999999999999999999999999888999999999999999999999
Q ss_pred eeeC
Q psy8869 590 VEKI 593 (593)
Q Consensus 590 l~~~ 593 (593)
|+++
T Consensus 245 vek~ 248 (248)
T 1m1h_A 245 VEKI 248 (248)
T ss_dssp ----
T ss_pred EEeC
Confidence 9985
No 22
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-32 Score=308.50 Aligned_cols=274 Identities=26% Similarity=0.329 Sum_probs=196.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhc--CCccccccccCCChhhhhcCceEEeeeeEEeeC-------CeEEEEE
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF--GGEAKSYDQIDAAPEEKARGITINTAHIEYETK-------ARHYAHV 80 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------~~~~~ii 80 (593)
.+..||+|+||+|||||||+.+|+....... +.-.....++|..+.|++||+||..+...+.+. ++.++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 4678999999999999999999986554322 111112346999999999999999887777653 6789999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHH----
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEI---- 154 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~---- 154 (593)
|||||.+|..++.++++.+|+||+||||.+|++.||+..+..+...++|.++ +|||||+... ....+++...+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~-~iNKiDr~~a~~~~~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIV-YVNKMDRQGANFLRVVEQIKKRLGHTP 169 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEE-EEECSSSTTCCHHHHHHHHHHHHCSCE
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEccccccCccHHHHHHHhhhhcccce
Confidence 9999999999999999999999999999999999999999999999999766 5899998643 22222221111
Q ss_pred --------------------------------------------------------------------HHHHhhcC----
Q psy8869 155 --------------------------------------------------------------------RELLNKYE---- 162 (593)
Q Consensus 155 --------------------------------------------------------------------~~~l~~~~---- 162 (593)
..++....
T Consensus 170 ~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~ 249 (709)
T 4fn5_A 170 VPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEA 249 (709)
T ss_dssp EESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHH
T ss_pred eeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHH
Confidence 00000000
Q ss_pred ----------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC--------------------CCCCCC
Q psy8869 163 ----------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN--------------------RAIDGA 212 (593)
Q Consensus 163 ----------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~--------------------~~~~~~ 212 (593)
......|++..||+++ .++..|++.+..++|.|. .+.+.|
T Consensus 250 ~~~~~l~~~~~~~~~~pv~~gsa~~~----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~p 319 (709)
T 4fn5_A 250 EIKEGLRLRTLACEIVPAVCGSSFKN----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEP 319 (709)
T ss_dssp HHHHHHHHHHHTTSCEEEEECBTTTT----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSC
T ss_pred HHHHHHHHhhhhceeeeeeeeecccC----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCc
Confidence 0123478899999887 688999999999999884 345789
Q ss_pred eeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccC
Q psy8869 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKRED 288 (593)
Q Consensus 213 ~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~ 288 (593)
|.+.|.++...+..|.+.++||.||+|+.||+|+.... +.+.++..+... ..++++|.||++|++ .|++ +
T Consensus 320 l~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i--~Gl~--~ 393 (709)
T 4fn5_A 320 FSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVK--GKKERVGRMVQMHANQREEIKEVRAGDIAAL--IGMK--D 393 (709)
T ss_dssp CEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTT--CCCCBCCCEECCCSSCCCEESEECTTCEEEE--CSCS--S
T ss_pred ceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecC--CcEEeecceeEeecceeeEeeeecCCCeeee--cCCC--c
Confidence 99999999999999999999999999999999976532 233455555443 468999999999987 5654 6
Q ss_pred CccceEEecCCC
Q psy8869 289 VERGQVLAKPGS 300 (593)
Q Consensus 289 i~~G~vl~~~~~ 300 (593)
+..|++|++.+.
T Consensus 394 ~~~gdTl~~~~~ 405 (709)
T 4fn5_A 394 VTTGDTLCSIEK 405 (709)
T ss_dssp CCTTCEEECSSS
T ss_pred CccCCEecCCCc
Confidence 889999998754
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=3.4e-32 Score=292.90 Aligned_cols=269 Identities=25% Similarity=0.298 Sum_probs=210.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhh------cCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK------FGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~------~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
+...+|+++||+|||||||+++|+...... ...........|..+.|+++|+|+......+++.+..++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 457899999999999999999997432111 01111112245667788999999999999999999999999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHHHHHHhhc
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEIRELLNKY 161 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~~~~l~~~ 161 (593)
||.+|...+..+++.+|++|+|+|++++...|+..++..+...++|.++ ++||+|+... .+..+. +.+.+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiiv-viNK~Dl~~~~~~~~l~e----i~~~l~~~ 165 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMT-FINKMDRDTRPSIELLDE----IESILRIH 165 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEE-EEECTTSCCSCHHHHHHH----HHHHHCCE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE-EEeCCCCccccHHHHHHH----HHHhhCCC
Confidence 9999999999999999999999999999999999999999999999655 6799999753 222222 22222100
Q ss_pred -------------------------------------------------------------------------------C
Q psy8869 162 -------------------------------------------------------------------------------E 162 (593)
Q Consensus 162 -------------------------------------------------------------------------------~ 162 (593)
-
T Consensus 166 ~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~ 245 (528)
T 3tr5_A 166 CAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGY 245 (528)
T ss_dssp EEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred ceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHH
Confidence 0
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCC---------CCCCeeEEEEEEEE--eC-CCcEEE
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS--IS-GRGTVV 230 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~~--~~-~~G~v~ 230 (593)
.....+|++++||++| .|+.+|+++|.+++|+|... .+.||...|+++.. .+ ++|+++
T Consensus 246 ~~~~~~PV~~gSA~~~----------~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~ 315 (528)
T 3tr5_A 246 LKGELTPIFFGSAINN----------FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIA 315 (528)
T ss_dssp HTTSEEEEEECBGGGT----------BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEE
T ss_pred hcCceeEEEeccccCC----------ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEE
Confidence 0112359999999998 68999999999999987642 25789999988874 56 889999
Q ss_pred EEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 231 TGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 231 ~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
+++|.||+|+.||.|+..+. +.+.+|.++... +.++++|.|||++++. + ..+++.||+|++.+
T Consensus 316 ~~RV~sG~l~~g~~v~~~~~--~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~--l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 316 FLRIASGQYQKGMKAYHVRL--KKEIQINNALTFMAGKRENAEEAWPGDIIGLH--N--HGTIQIGDTFTQGE 382 (528)
T ss_dssp EEEEEESCEETTEEEEETTT--TEEEEESSCBCCBTTCSSCCSEECTTCEEEEE--E--SSSCCTTCEEESSC
T ss_pred EEEEecCeEcCCCEEEecCC--CceEEEeeeEEEeCCCeeECCEECCCCEEEEc--C--CCCCccCCEEcCCC
Confidence 99999999999999998754 366788887653 5689999999999873 3 34688999999753
No 24
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=6.4e-35 Score=322.45 Aligned_cols=269 Identities=24% Similarity=0.316 Sum_probs=214.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
..||+|+||+|||||||+.+|+........ .-.....++|..+.|++||+|+..+...++++++.++|||||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 579999999999999999999876543321 111223469999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH--HHHHHHHHHHH-------------
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--EELLELVEIEI------------- 154 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--~~~~~~~~~~~------------- 154 (593)
.++.++++.+|+||+||||.+|++.||+.++..+...++|.++ +|||||+... ....+++...+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~-~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIF-FINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEE-CCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEE-EEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 9999999999999999999999999999999999999999766 5899998753 22222221111
Q ss_pred -------------------------HHHHhhcCC--------------CCCCceEEEeccCccccCCCCCCCcCcHHHHH
Q psy8869 155 -------------------------RELLNKYEF--------------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLS 195 (593)
Q Consensus 155 -------------------------~~~l~~~~~--------------~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll 195 (593)
..++..-.+ .....|+++.||+++ .|+..|+
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LL 230 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN----------IGIDNLI 230 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC----------CSHHHHH
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC----------CCchhHh
Confidence 111111000 012478999999987 6899999
Q ss_pred HHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceeccee
Q psy8869 196 KALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQG 271 (593)
Q Consensus 196 ~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a 271 (593)
+.+..++|+|....+.||.+.|+++...++.|.+.++||.||+|+.||.|++...+ +.++..+... ..++++|
T Consensus 231 d~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~v~~l~~~~g~~~~~v~~a 307 (638)
T 3j25_A 231 EVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE---KIKVTEMYTSINGELCKIDRA 307 (638)
T ss_dssp HHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC---CSSBCCCCSSCCCCBSCCCTT
T ss_pred hhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc---ceeEEeeeccccccccccccc
Confidence 99999999998888899999999999999999999999999999999999875422 2344444332 4578999
Q ss_pred eecceEEEEeccCCccCCccceEEecCC
Q psy8869 272 QAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 272 ~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
.|||++++ .+ ..++.|+++++..
T Consensus 308 ~aGdIv~i--~g---~~~~~~~tl~d~~ 330 (638)
T 3j25_A 308 YSGEIVIL--QN---EFLKLNSVLGDTK 330 (638)
T ss_dssp BCCCCSCC--CS---SSCSSEECSSSSS
T ss_pred ccceEEEE--ec---cccccCceecCCC
Confidence 99999876 33 4577888888764
No 25
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=5e-31 Score=293.88 Aligned_cols=272 Identities=25% Similarity=0.317 Sum_probs=215.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC--CccccccccCCChhhhhcCceEEeeeeEEeeCC-------eEEEE
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG--GEAKSYDQIDAAPEEKARGITINTAHIEYETKA-------RHYAH 79 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------~~~~i 79 (593)
.+...||+++||+|||||||+++|+........ .......++|..+.|+++|+|+......+.+.+ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 456789999999999999999999864321110 001113467889999999999998887777776 89999
Q ss_pred EecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 80 iDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
||||||.+|...+..+++.+|++|+|+|+++|...||.+++..+...++|.++ ++||+|+...+ ++.+..++++.+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~il-viNKiD~~~~~--~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIA-FVNKMDRMGAN--FLKVVNQIKTRLG 163 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEE-EEeCCCccccc--HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999665 58999987641 1122222222221
Q ss_pred hc---------------------------------C--------------------------------------------
Q psy8869 160 KY---------------------------------E-------------------------------------------- 162 (593)
Q Consensus 160 ~~---------------------------------~-------------------------------------------- 162 (593)
.. +
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 10 0
Q ss_pred -------------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC--------------------CC
Q psy8869 163 -------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AI 209 (593)
Q Consensus 163 -------------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~--------------------~~ 209 (593)
.....+|+++.||+++ .|+..|++.+..++|+|.. +.
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 313 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKN----------KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASD 313 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccC----------ccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCC
Confidence 0012368999999987 6899999999999998754 15
Q ss_pred CCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCC
Q psy8869 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTK 285 (593)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~ 285 (593)
+.||.+.|++++..++.|.+++|||.||+|+.||.|+..+. +.+.+|.+|... ..++++|.|||++++. |++
T Consensus 314 ~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl~ 389 (704)
T 2rdo_7 314 DEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVK--AARERFGRIVQMHANKREEIKEVRAGDIAAAI--GLK 389 (704)
T ss_pred CCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCC--CcEEEeceEEEEeCCCceEcceeCCCCEEEEe--Ccc
Confidence 67999999999999999999999999999999999997653 356678887754 5789999999999995 554
Q ss_pred ccCCccceEEecCC
Q psy8869 286 REDVERGQVLAKPG 299 (593)
Q Consensus 286 ~~~i~~G~vl~~~~ 299 (593)
+++.||+|++++
T Consensus 390 --~~~~GdTl~~~~ 401 (704)
T 2rdo_7 390 --DVTTGDTLCDPD 401 (704)
T ss_pred --cCccCCEEeCCC
Confidence 578999999765
No 26
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.5e-32 Score=292.35 Aligned_cols=269 Identities=23% Similarity=0.312 Sum_probs=195.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhc---C---CccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF---G---GEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~---~---~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
+..++|+++||+|||||||+++|+....... . +.......+|..+.|+++|+|+......+++.+..++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4679999999999999999999986422111 0 001112356788899999999999888899999999999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH--HHHHHHHHHHHHHHhh-
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE--ELLELVEIEIRELLNK- 160 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~--~~~~~~~~~~~~~l~~- 160 (593)
||.+|...+..++..+|++|+|+|++++...|+.+++..+...++|. ++++||+|+.... +..+. +++.+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~~~~~~~~~~~----i~~~l~~~ 165 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRDIRDPMELLDE----VENELKIG 165 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSCCSCHHHHHHH----HHHHHCCE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCccccHHHHHHH----HHHHhCCC
Confidence 99999999999999999999999999999999999999999999995 5568999997642 22222 2222110
Q ss_pred ---------------------------c----C-----------------------------------------------
Q psy8869 161 ---------------------------Y----E----------------------------------------------- 162 (593)
Q Consensus 161 ---------------------------~----~----------------------------------------------- 162 (593)
+ +
T Consensus 166 ~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~ 245 (529)
T 2h5e_A 166 CAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKEL 245 (529)
T ss_dssp EEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHH
Confidence 0 0
Q ss_pred -CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCC---------CCCCeeEEEEEEEE---eCCCcEE
Q psy8869 163 -FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA---------IDGAFLLPVEDVFS---ISGRGTV 229 (593)
Q Consensus 163 -~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~---------~~~~~~~~i~~~~~---~~~~G~v 229 (593)
..+..+|++++||+++ .|+.+|+++|..++|+|... .+.||...|+++.. .+++|++
T Consensus 246 ~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i 315 (529)
T 2h5e_A 246 FLAGEITPVFFGTALGN----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRV 315 (529)
T ss_dssp HHTTSEEEEEECBTTTT----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCC
T ss_pred HHhCceeEEEeeecccC----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceE
Confidence 0112468999999987 68999999999999987542 24788888777743 3568999
Q ss_pred EEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 230 VTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 230 ~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
++|+|.||+|+.||.|++.+. +...+|.+|+.. +.++++|.|||+|++ .++ .+++.||+|++++
T Consensus 316 ~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 316 AFMRVVSGKYEKGMKLRQVRT--AKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH--GTIQIGDTFTQGE 383 (529)
T ss_dssp EEEEEEESCEETTCEEEETTT--TEEEECSCEECCCC-----CCEECTTCEEEE--CCS--SCCCTTCEEESSC
T ss_pred EEEEEecCeEcCCCEEEEeeC--CCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--CCCccCCEeecCC
Confidence 999999999999999998864 367889999864 578999999999988 333 5678899999865
No 27
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=100.00 E-value=2.5e-36 Score=275.30 Aligned_cols=161 Identities=17% Similarity=0.304 Sum_probs=134.5
Q ss_pred ceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhcc
Q psy8869 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNT 498 (593)
Q Consensus 419 ~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 498 (593)
++|||+||++|+|.++++.| +.+++++|+|+++..++++|+++.+.+|+|||||||+++++++.|+.++++
T Consensus 2 ~~WYvv~t~~g~E~~v~~~L---------~~~~~e~~vP~~~~~~~~~gk~~~~~~plfpgYvFV~~~~~~~~~~~v~~~ 72 (162)
T 2oug_A 2 QSWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT 72 (162)
T ss_dssp CEEEEEEECTTTHHHHHHHH---------HHTTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHHS
T ss_pred CeEEEEEecCCHHHHHHHHH---------HhCCCEEECCCEEEEEEcCCcEEEEEEecCCCEEEEEEEcccCceEEEEeC
Confidence 57999999999999999999 557899999999999999999999999999999999999988999999999
Q ss_pred CCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecC
Q psy8869 499 KKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFG 578 (593)
Q Consensus 499 ~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g 578 (593)
+||.+|+++ +++|.+||++||+.|+..++.+ ......|.+||+|+|++|||+|++|.|.++|+++ ++.|.+++||
T Consensus 73 ~gv~~fv~~-g~~p~pi~~~ei~~i~~~~~~~---~~~~~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-r~~V~v~ifg 147 (162)
T 2oug_A 73 RGVSHFVRF-GASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLIN 147 (162)
T ss_dssp TTEEEECCS-SSSSCCCCCHHHHHHHHCC-----------------CTTHHHHHHHHHHHHTTCSSHHH-HHHHHHHHHH
T ss_pred CCccEEECC-CCEeeEcCHHHHHHHHhhhccc---ccccCCCCCCCEEEEcccCCCCcEEEEEEECCCC-EEEEEEHHhC
Confidence 999999987 7889999999999999887543 2334568999999999999999999999998876 8999999999
Q ss_pred cceEEeeccCceeeC
Q psy8869 579 RATPVELEFNQVEKI 593 (593)
Q Consensus 579 ~~~~v~~~~~~l~~~ 593 (593)
|.++|+++.++|+++
T Consensus 148 r~~~v~l~~~~vek~ 162 (162)
T 2oug_A 148 KEIKHSVKNTEFRKL 162 (162)
T ss_dssp HHHHHHHHC------
T ss_pred CceEEEECHHHEEeC
Confidence 999999999999874
No 28
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.98 E-value=1.9e-30 Score=288.84 Aligned_cols=281 Identities=26% Similarity=0.307 Sum_probs=205.0
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC-C-ccccccccCCChhhhhcCceEEeeeeEEeeCCeEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG-G-EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYA 78 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 78 (593)
|+.......+...+|+++||+|||||||+++|+........ + -......+|....|+++|+|+......+.+.+..++
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~ 80 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN 80 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence 45444444567899999999999999999999864322110 0 001124578889999999999998888888999999
Q ss_pred EEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 79 iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
|||||||.+|...+..++..+|++|+|+|++++...|+.+++..+...++|.++ ++||+|+...+ .+.+..++++.+
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~iv-viNKiD~~~~~--~~~~~~~l~~~l 157 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA-FANKMDKTGAD--LWLVIRTMQERL 157 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE-EEECTTSTTCC--HHHHHHHHHHTT
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEE-EEECCCcccCC--HHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999665 58999997642 111222333222
Q ss_pred hh---------------------------------------------------------------------------cC-
Q psy8869 159 NK---------------------------------------------------------------------------YE- 162 (593)
Q Consensus 159 ~~---------------------------------------------------------------------------~~- 162 (593)
.. ..
T Consensus 158 ~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~ 237 (691)
T 1dar_A 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEP 237 (691)
T ss_dssp CCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCC
T ss_pred CCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCC
Confidence 10 00
Q ss_pred -------------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC------------------CCCC
Q psy8869 163 -------------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR------------------AIDG 211 (593)
Q Consensus 163 -------------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~------------------~~~~ 211 (593)
.....+|++++||+++ .|+..|++.+..++|+|.. +.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 307 (691)
T 1dar_A 238 TEEELVAAIRKGTIDLKITPVFLGSALKN----------KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNG 307 (691)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBGGGT----------BSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTS
T ss_pred CHHHHHHHHHHHHHhCcEeEEEEeecccC----------cCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCC
Confidence 0011378999999997 6899999999999998865 2578
Q ss_pred CeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCcc
Q psy8869 212 AFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKRE 287 (593)
Q Consensus 212 ~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~ 287 (593)
||.+.|++++..++.|.++++||.+|+|+.||.|+..+ .+...+|..|... ..++++|.|||++++. |++
T Consensus 308 p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~-- 381 (691)
T 1dar_A 308 PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT--KGRKERVARLLRMHANHREEVEELKAGDLGAVV--GLK-- 381 (691)
T ss_dssp CCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETT--TTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CCS--
T ss_pred CcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecC--CCcEEEEceEEEEeCCCceEcceecCCCEEEEe--Ccc--
Confidence 99999999999999999999999999999999999764 3455677777654 4689999999999985 554
Q ss_pred CCccceEEecCCC
Q psy8869 288 DVERGQVLAKPGS 300 (593)
Q Consensus 288 ~i~~G~vl~~~~~ 300 (593)
+++.||+|++.+.
T Consensus 382 ~~~~Gdtl~~~~~ 394 (691)
T 1dar_A 382 ETITGDTLVGEDA 394 (691)
T ss_dssp SCCTTCEEEETTC
T ss_pred cCccCCEEecCCC
Confidence 5678999997653
No 29
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.98 E-value=8e-32 Score=254.15 Aligned_cols=177 Identities=20% Similarity=0.338 Sum_probs=157.9
Q ss_pred CCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCcc
Q psy8869 208 AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRE 287 (593)
Q Consensus 208 ~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~ 287 (593)
+.++||+|+|+++|+ +.|++++|+|++|++++||.|.+.|++ ..++|++|+.++.++++|.|||+|+++|+|++..
T Consensus 2 ~~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~--~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK--HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp -----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT--EEEEEEEECSSSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC--CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHH
Confidence 357899999999997 799999999999999999999999754 7899999999999999999999999999999999
Q ss_pred CCccceEEecCCCC-CcccEEEEEEEEeecCCCCCCccccCCceeEEEEEeeeEEEEEEec-------------CCcccc
Q psy8869 288 DVERGQVLAKPGSI-KPHKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELP-------------KNKEMV 353 (593)
Q Consensus 288 ~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l 353 (593)
++++||+|++++.+ ++++.|+|++.||+++ ++|..||++.+|+++.++.|++..+ .++++|
T Consensus 78 di~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l 152 (204)
T 3e1y_E 78 EILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFV 152 (204)
T ss_dssp CCCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCC
T ss_pred HCccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCc
Confidence 99999999998764 6789999999999875 4799999999999999999998632 134689
Q ss_pred cCCCEEEEEEEeCceeeeecC------CeEEEeeCCeEEEeeeecc
Q psy8869 354 MPGDNVLITVRLINPIAMEEG------LRFAIREGVQQFIQDNLLT 393 (593)
Q Consensus 354 ~~gd~~~v~~~~~~p~~~~~~------~r~vlr~~~~~i~~G~v~~ 393 (593)
++||.+.|+|++.+|+|+++| +||+|||+++|+|+|.|+.
T Consensus 153 ~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~ 198 (204)
T 3e1y_E 153 KQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLK 198 (204)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEE
T ss_pred CCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEE
Confidence 999999999999999999998 7999999999999998754
No 30
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.97 E-value=4.2e-30 Score=285.22 Aligned_cols=269 Identities=23% Similarity=0.271 Sum_probs=215.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhc-CCc-cccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKF-GGE-AKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~-~~~-~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
.+..+|+++||+|||||||+++|++...... .+. ......+|..+.|+.+|+|+......+...+..++|||||||.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 5678999999999999999999996543211 111 11224578888999999999888888888899999999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh--------
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLN-------- 159 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~-------- 159 (593)
|...+..+++.+|++++|+|+++|...|+.+++..+...++|.++ ++||+|+. .. .+.+..++.+.+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~il-v~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~P 162 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV-VVTKLDKG-GD--YYALLEDLRSTLGPILPIDLP 162 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEE-EEECGGGC-CC--HHHHHHHHHHHHCSEEECEEE
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEE-EecCCchh-hh--HHHHHHHHHHHhCCcceEEee
Confidence 999999999999999999999999999999999999999999665 58999987 31 1112222222221
Q ss_pred ---------------------------------------------------------------hcCC-------------
Q psy8869 160 ---------------------------------------------------------------KYEF------------- 163 (593)
Q Consensus 160 ---------------------------------------------------------------~~~~------------- 163 (593)
...+
T Consensus 163 i~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~ 242 (665)
T 2dy1_A 163 LYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAV 242 (665)
T ss_dssp EEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 0000
Q ss_pred -CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCCC-CCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEec
Q psy8869 164 -PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRA-IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRV 241 (593)
Q Consensus 164 -~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~~-~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~ 241 (593)
....+|++++||++| .|+.+|+++|..++|+|... .+.|+.+.|.+++..++.|+++.|+|.+|+|+.
T Consensus 243 ~~~~~~pv~~~SA~~~----------~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~ 312 (665)
T 2dy1_A 243 RRGLLYPVALASGERE----------IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKP 312 (665)
T ss_dssp HTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECT
T ss_pred HhCCeeEEEEeecccC----------cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEec
Confidence 012379999999998 68999999999999987654 678999999999999999999999999999999
Q ss_pred CCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCCC
Q psy8869 242 GEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300 (593)
Q Consensus 242 gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (593)
||.|+..+ ...+|.+|... ..++++|.||+++++. +++ ++++||+|++++.
T Consensus 313 g~~v~~~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl~--~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 313 GDSLQSEA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KAE--GLHRGMVLWQGEK 367 (665)
T ss_dssp TEEEBCTT----SCEEESSEEEEETTEEEEESCEETTCEEEES--SCT--TCCTTCEEESSSC
T ss_pred CCEEEcCC----CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--CCc--cCccCCEEecCCC
Confidence 99998654 44678877653 4689999999999993 543 6789999997653
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=6.3e-33 Score=297.00 Aligned_cols=255 Identities=27% Similarity=0.310 Sum_probs=199.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCChhhhHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYIK 90 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh~~~~~ 90 (593)
..+|+++||+|||||||+++|++...... ...|+|.+.....+.. ++..++|||||||++|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~----------------~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM----------------EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS----------------SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc----------------cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH
Confidence 46799999999999999999987643321 1346777776666665 466899999999999999
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
++..++..+|++|||+|+++|...||.+|+..+...++| +||++||+|+.+... +.+..++..+..........+|+
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEEE
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCceE
Confidence 999999999999999999999999999999999999999 566789999975310 00111222111001111135799
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhhhCC--CCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEe
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP--TPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEII 248 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~--~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~ 248 (593)
+++||++| .++++|+++|...++ .+..+.+.|++++|.+++..++.|++++|+|.+|+|++||.+..+
T Consensus 145 v~vSAktG----------~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g 214 (537)
T 3izy_P 145 VHVSALTG----------ENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG 214 (537)
T ss_dssp CCCCSSSS----------CSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS
T ss_pred EEEECCCC----------CCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC
Confidence 99999998 688999998876543 445567789999999999999999999999999999999988532
Q ss_pred ecCCceEEEEEEEEecc-eecceeeecceEEEEeccCCccCCccceEEecCCCCC
Q psy8869 249 GIKDTVKTTCTGVEMFR-KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIK 302 (593)
Q Consensus 249 p~~~~~~~~v~si~~~~-~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~ 302 (593)
....+|++|+.++ .++++|.||+.|++ .|++ ....+||+|+..++.+
T Consensus 215 ----~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~~ 262 (537)
T 3izy_P 215 ----KSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESEP 262 (537)
T ss_dssp ----SCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSSC
T ss_pred ----CceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCChH
Confidence 2347899999885 78999999999988 4655 3458999999876543
No 32
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=4.9e-32 Score=287.75 Aligned_cols=249 Identities=27% Similarity=0.305 Sum_probs=196.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+..+|+++||+|||||||+++|++..... ...+|+|++.....+++++..++|||||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~----------------~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS----------------GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB----------------TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc----------------ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 45789999999999999999998643211 11357888887777888888999999999999999
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC----CC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP----GN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~----~~ 166 (593)
++.+++..+|+++||+|+++|.+.||.+|+..+...++| +||++||+|+.+++. + .+...+...++. +.
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGG 139 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCC
Confidence 999999999999999999999999999999999999999 666789999976410 0 011111111111 12
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC--CCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCE
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI--PTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEE 244 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l--~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~ 244 (593)
.+|++++||++| .++++|+++|.... ..+..+.+.|+.+.|.+++..++.|++++|+|.+|++++||.
T Consensus 140 ~~~~v~vSAktG----------~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~ 209 (501)
T 1zo1_I 140 ESQFVHVSAKAG----------TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDI 209 (501)
T ss_dssp SCEEEECCTTTC----------TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCE
T ss_pred CccEEEEeeeec----------cCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCE
Confidence 479999999998 67888999986532 233445678899999999999999999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEe-cceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 245 LEIIGIKDTVKTTCTGVEM-FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 245 v~i~p~~~~~~~~v~si~~-~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
+.+++ ...+|++++. ++.++++|.||+.+.+. |++ .....|++++...
T Consensus 210 v~~g~----~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 210 VLCGF----EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEEEB----SSCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEEcc----ceeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 98865 2368999985 45789999999998874 443 2247899998554
No 33
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=3.3e-30 Score=280.59 Aligned_cols=259 Identities=27% Similarity=0.290 Sum_probs=192.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe------------------e
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE------------------T 72 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------~ 72 (593)
+..+|+++||+|||||||+++|++....... .+|+|.++....+. .
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e----------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE----------------AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc----------------CCceecccCeEEEeechhhhhcccccccccccc
Confidence 4579999999999999999999865321110 12344332222221 1
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH---------
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD--------- 143 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~--------- 143 (593)
....++|||||||++|...+.++++.+|++|||+|+++|.+.||.+++..+...++|. ++++||||+.+.
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiDl~~~~~~~~~~~~ 146 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKIDRIHGWRVHEGRPF 146 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGGGSTTCCCCTTCCH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEecccccccccccccCCch
Confidence 1235899999999999988888889999999999999999999999999999999995 556899998641
Q ss_pred --------H---HHHHHHHHHHHHHHhhcCCC----------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 144 --------E---ELLELVEIEIRELLNKYEFP----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 144 --------~---~~~~~~~~~~~~~l~~~~~~----------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+ +.+.....++.+.+...++. ...+|++++||++| .|+.+|+++|...+
T Consensus 147 ~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG----------~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG----------EGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC----------CCchhHHHHHHhhc
Confidence 1 11222222344444443332 23579999999998 78999999988765
Q ss_pred CCC-----CCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec------------c
Q psy8869 203 PTP-----NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF------------R 265 (593)
Q Consensus 203 ~~~-----~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~------------~ 265 (593)
+.+ ..+.+.|+++.|.+++..++.|++++|+|.+|+|++||.|.+++.+....++|++|... .
T Consensus 217 ~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~ 296 (594)
T 1g7s_A 217 QQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKF 296 (594)
T ss_dssp HHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSE
T ss_pred cccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCc
Confidence 422 22457899999999999999999999999999999999999987654456789998753 3
Q ss_pred eecceee--ecceEEEEeccCCccCCccceEEecCCC
Q psy8869 266 KLLDQGQ--AGDNIGLLLRGTKREDVERGQVLAKPGS 300 (593)
Q Consensus 266 ~~~~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 300 (593)
.++++|. +|+.+++ .++ .++..|+.|+..++
T Consensus 297 ~~v~ea~~~aG~~v~~--~~l--~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 297 QKVDEVVAAAGIKIVA--PGI--DDVMAGSPLRVVTD 329 (594)
T ss_dssp EECSEEESSEEEEEEC--SSC--TTBCTTCEEEECSS
T ss_pred eEccEEcCCCCcEEEE--ccc--CCCCCCCEEEecCC
Confidence 5788888 7766654 333 45689999987654
No 34
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=3.3e-29 Score=279.07 Aligned_cols=272 Identities=25% Similarity=0.336 Sum_probs=201.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcC-C-ccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFG-G-EAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
.+...+|+++||+|||||||+++|+........ + .......+|....|+++|+|+......+.+.+..++|||||||.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 456899999999999999999999964322110 0 00112357888899999999999888888899999999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc-----
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY----- 161 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~----- 161 (593)
+|...+..++..+|++|+|+|++++...++..++..+...++|.++ ++||+|+...+ .+.+..++++.+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~il-viNK~Dl~~~~--~~~~~~~l~~~l~~~~~~~~ 163 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV-FVNKMDKLGAN--FEYSVSTLHDRLQANAAPIQ 163 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE-EEECTTSTTCC--HHHHHHHHHHHHCCCEEESE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEE-EEECCCccccc--hHHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999655 58999998642 112222333332210
Q ss_pred ---------------------CC---------------------------------------------------------
Q psy8869 162 ---------------------EF--------------------------------------------------------- 163 (593)
Q Consensus 162 ---------------------~~--------------------------------------------------------- 163 (593)
.|
T Consensus 164 ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~ 243 (693)
T 2xex_A 164 LPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243 (693)
T ss_dssp EEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHH
T ss_pred eecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHH
Confidence 00
Q ss_pred ------CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC--------------------CCCCCeeEEE
Q psy8869 164 ------PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR--------------------AIDGAFLLPV 217 (593)
Q Consensus 164 ------~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~--------------------~~~~~~~~~i 217 (593)
....+|+++.||+++ .|+..|++.+..++|+|.. +.+.||.+.|
T Consensus 244 l~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V 313 (693)
T 2xex_A 244 IRQATTNVEFYPVLCGTAFKN----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALA 313 (693)
T ss_dssp HHHHHHTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEE
T ss_pred HHHHHHhCCeeeEEEeecccC----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEE
Confidence 011268999999987 6899999999999998854 2578999999
Q ss_pred EEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEec----ceecceeeecceEEEEeccCCccCCccce
Q psy8869 218 EDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (593)
Q Consensus 218 ~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~ 293 (593)
++++..++.|.+.++||.||+|+.||.|+... .+.+.+|.+|... ..++++|.|||++++. |++ +++.||
T Consensus 314 fK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~--~~~~Gd 387 (693)
T 2xex_A 314 FKVMTDPYVGKLTFFRVYSGTMTSGSYVKNST--KGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GLK--DTGTGD 387 (693)
T ss_dssp EEEEEETTTEEEEEEEEEESEEETTEEEEETT--TTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SCS--SCCTTC
T ss_pred EEeeecCCCceEEEEEEEeeeEecCCEEEecC--CCceEEeceEEEEeCCCceEccccCcCCEEEEe--Ccc--cCccCC
Confidence 99999999999999999999999999998753 3466788887654 4689999999999985 554 567899
Q ss_pred EEecCC
Q psy8869 294 VLAKPG 299 (593)
Q Consensus 294 vl~~~~ 299 (593)
+|++.+
T Consensus 388 Tl~~~~ 393 (693)
T 2xex_A 388 TLCGEK 393 (693)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 999765
No 35
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=99.95 E-value=9.8e-29 Score=221.74 Aligned_cols=143 Identities=19% Similarity=0.330 Sum_probs=126.9
Q ss_pred ceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhcc
Q psy8869 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNT 498 (593)
Q Consensus 419 ~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~ 498 (593)
++||+++|++|+|+++++.|.++....++. ..++++|.. |||||||++++.++.|+.++++
T Consensus 3 ~~WYvv~~~~g~E~~v~~~L~~~~~~~~l~--i~~v~vp~~-----------------fPGYVfVe~~~~~~~~~~v~~t 63 (152)
T 3p8b_B 3 GKIFAVRVTHGQEETTAKLIYSKVRTYNLP--IYAILAPSR-----------------VKGYIFVEAPNKGVVDEAIRGI 63 (152)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHTCC--CCEEEECTT-----------------CCSEEEEEESSHHHHHHHHTTC
T ss_pred ceEEEEEEECCHHHHHHHHHHHHHhhcCCc--EEEEEeecC-----------------CCcEEEEEEEchHHHHHHHhCC
Confidence 679999999999999999999988776653 566777653 9999999999999999999999
Q ss_pred CCeeEeccCCCCCceecCHHHHHHHHHHHhcCCCCCCCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecC
Q psy8869 499 KKVTGFIGGKSNRPTPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFG 578 (593)
Q Consensus 499 ~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g 578 (593)
+||.+|++. +||++|++.|+.. ......|.+||.|+|++|||+|++|.|.++|.++++++|.+.+||
T Consensus 64 ~gV~~fvg~------~v~~~Ei~~il~~-------~~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~g 130 (152)
T 3p8b_B 64 RHARGVLPG------EVPFKEIEHFLEE-------KPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAI 130 (152)
T ss_dssp TTEEEECSS------CBCGGGTGGGCCC-------SCTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCS
T ss_pred CCEEEeCCC------CCCHHHHHHHhCc-------CCccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecc
Confidence 999999963 8999999977532 123456899999999999999999999999999999999999999
Q ss_pred cceEEeeccCceeeC
Q psy8869 579 RATPVELEFNQVEKI 593 (593)
Q Consensus 579 ~~~~v~~~~~~l~~~ 593 (593)
|.++|+++.++|+++
T Consensus 131 r~tpvel~~~~v~~i 145 (152)
T 3p8b_B 131 VPIPVTIKGDYVRLI 145 (152)
T ss_dssp SCCEEEEEGGGEEEE
T ss_pred eeEEEEECHHHEEEe
Confidence 999999999999974
No 36
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.95 E-value=2.7e-27 Score=268.77 Aligned_cols=288 Identities=24% Similarity=0.300 Sum_probs=199.9
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--------------
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-------------- 73 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 73 (593)
.....+||+++||+|||||||+++|+...............++|....|+++|+|+......+.+.
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 345678999999999999999999987643222111112245788899999999998766554443
Q ss_pred --CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC------HHH
Q psy8869 74 --ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD------DEE 145 (593)
Q Consensus 74 --~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~------~~~ 145 (593)
+..++|||||||.+|...+..+++.+|++|+|+|+++|...|+..++..+...++|.++ ++||+|+.. +++
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~il-viNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVV-VINKVDRALLELQVSKED 173 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEE-EEECHHHHHHTSCCCHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEE-EEECCCcchhhhccCHHH
Confidence 67899999999999999999999999999999999999999999999888888999654 689999862 333
Q ss_pred H---HHHHHHHHHHHHhhc-----C---CCCCCceEEEeccCccccCC---------------------CCC---C----
Q psy8869 146 L---LELVEIEIRELLNKY-----E---FPGNDIPIIKGSAKLALEGD---------------------TGP---L---- 186 (593)
Q Consensus 146 ~---~~~~~~~~~~~l~~~-----~---~~~~~~~vi~~Sa~~g~~~~---------------------~~w---~---- 186 (593)
. ++.+..+++..+..+ + +.+...++...|+++|++-. .-| |
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 2 333444555555321 1 32223467888997764200 012 0
Q ss_pred -----C--------------------------------------------cCc------------------------HHH
Q psy8869 187 -----G--------------------------------------------EQS------------------------ILS 193 (593)
Q Consensus 187 -----~--------------------------------------------~~~------------------------~~~ 193 (593)
. +.. +..
T Consensus 254 ~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~ 333 (842)
T 1n0u_A 254 TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADA 333 (842)
T ss_dssp TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHH
T ss_pred CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHH
Confidence 0 000 277
Q ss_pred HHHHhhhhCCCCC-------------------------CCCCCCeeEEEEEEEEeCCCcE-EEEEEEEeeeEecCCEEEE
Q psy8869 194 LSKALDTYIPTPN-------------------------RAIDGAFLLPVEDVFSISGRGT-VVTGRVERGIVRVGEELEI 247 (593)
Q Consensus 194 ll~~l~~~l~~~~-------------------------~~~~~~~~~~i~~~~~~~~~G~-v~~G~v~~G~l~~gd~v~i 247 (593)
|++.+..++|+|. .+.++||.+.|++++..+..|. +.++||.||+|+.||.|++
T Consensus 334 LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v 413 (842)
T 1n0u_A 334 LLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRI 413 (842)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEE
T ss_pred HHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEe
Confidence 8889989999874 2457899999999999999995 9999999999999999987
Q ss_pred eecC----Cce---EEEEEEEEec----ceecceeeecceEEEEeccCCccCCccceEEecCC
Q psy8869 248 IGIK----DTV---KTTCTGVEMF----RKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299 (593)
Q Consensus 248 ~p~~----~~~---~~~v~si~~~----~~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 299 (593)
...+ ... ..+|..|... ..++++|.|||+|++ .|++...+..| +|++.+
T Consensus 414 ~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai--~gl~~~~~~t~-Tl~~~~ 473 (842)
T 1n0u_A 414 QGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL--VGIDQFLLKTG-TLTTSE 473 (842)
T ss_dssp ECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEE--ESCTTTCCSSE-EEESCT
T ss_pred ccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEE--Eccccceecce-eecCCC
Confidence 6321 112 4678887665 468999999999888 56655444556 888754
No 37
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=99.92 E-value=1.1e-24 Score=218.72 Aligned_cols=141 Identities=35% Similarity=0.698 Sum_probs=122.8
Q ss_pred ccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhhhccCCeeEeccCCCCCceecCHHHHHHHHHHH
Q psy8869 448 QKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQI 527 (593)
Q Consensus 448 ~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~ 527 (593)
......+|||+++..+.+ +.+.+|||||||||+++++++.|+.+++++||.+|+++ +++|.|||++|++.|+..+
T Consensus 207 ~~~~e~v~~P~~~~i~i~----k~v~rplFPGYVFV~m~~~d~~w~~Vr~tpGVtgFVg~-g~kP~pl~~~EV~~il~~~ 281 (352)
T 2xhc_A 207 SGRVEVVDYSTRKEIRIY----KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSS-GGQPVPVKDREMRPILRLA 281 (352)
T ss_dssp CEEEEEEECSSCEEEEEE----CEEEEESSTTEEEEEECCSHHHHHHHHTSTTCCEECCS-SSSCCCCCHHHHHHHHHHT
T ss_pred CceEEEEEccccceEEEE----EEEEecCCCCEEEEEEEcchhhHHHHhcCCCeeEEcCC-CCEEeecCHHHHHHHHHhh
Confidence 344456899999888865 57889999999999999999999999999999999987 7899999999999999988
Q ss_pred hcCC--CC--C-CCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCceeeC
Q psy8869 528 KKGV--EK--P-RPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 593 (593)
Q Consensus 528 ~~~~--~~--~-~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~l~~~ 593 (593)
..+. .. + .....|.+||+|+|++|||+|++|.|.+++.++++++|.+++|||.++|+++.++|+++
T Consensus 282 ~~~~~~~~~~~~~~~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek~ 352 (352)
T 2xhc_A 282 GLEEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI 352 (352)
T ss_dssp TCSCCC---------CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEECC
T ss_pred cccccccccccccccccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEEC
Confidence 6541 11 1 33457899999999999999999999999999889999999999999999999999985
No 38
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=99.91 E-value=2.2e-24 Score=184.82 Aligned_cols=109 Identities=39% Similarity=0.857 Sum_probs=103.6
Q ss_pred ceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecC-ceEEEEecccCcEEEEEEeeCh-----hhh
Q psy8869 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKN-QKSVIKKRFFPGYVLIEMEMTD-----ESW 492 (593)
Q Consensus 419 ~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g-~~~~~~~plfpgYvFv~~~~~~-----~~~ 492 (593)
++|||+||++|+|.++++.|++++...++++.++++|+|++++.++++| +++.+.+|+|||||||++++++ +.|
T Consensus 2 ~~WYvv~t~sg~E~kv~~~L~~~~~~~~~~~~~~ev~vP~~~v~~~~~g~k~~~~~~~lfPGYVFV~~~~~~~~~~~~~~ 81 (119)
T 1nz8_A 2 IEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEAW 81 (119)
T ss_dssp CEEEEEECCTTTHHHHHHHHHHHHHHHTCTTTCCEEECSEEEEEEECSSSCEEEEEEESSTTEEEEEECCCSSSSCCHHH
T ss_pred CeEEEEEEECCcHHHHHHHHHHHHHhCCCcccceEEECceEEEEEECCCCEEEEEEEeCCCCEEEEEeeccccccchhHH
Confidence 5899999999999999999999999999999999999999999999999 9999999999999999999988 899
Q ss_pred hhhhccCCeeEeccCCCCCceecCHHHHHHHHHHHh
Q psy8869 493 HLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIK 528 (593)
Q Consensus 493 ~~i~~~~~v~~~l~~~~~~p~~i~~~~~~~l~~~~~ 528 (593)
..+++++||.+|++. +++|.|||++||+.|+..++
T Consensus 82 ~~vr~t~gV~gfvg~-g~~P~pi~~~ev~~i~~~~~ 116 (119)
T 1nz8_A 82 EVVRGTPGITGFVGA-GMRPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp HHHHHSTTCCCCCCS-SSSSCBCCHHHHHHHHHHHT
T ss_pred HHHHcCCCceEEeCC-CCEEeECCHHHHHHHHHHHh
Confidence 999999999999987 78899999999999998763
No 39
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=7.9e-19 Score=168.84 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=116.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe-eCCeEEEEEecCCh--
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-TKARHYAHVDCPGH-- 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~~~iiDtpGh-- 85 (593)
+...++|+++|+.|+|||||+++|++.... . ......|.|.+.....+. .++..+.||||||+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~-----~---------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRL-----A---------FASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSS-----S---------CTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----e---------eecCCCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 345789999999999999999999853200 0 011122455555555554 45678999999995
Q ss_pred --------hhhH---HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHH
Q psy8869 86 --------ADYI---KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI 154 (593)
Q Consensus 86 --------~~~~---~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~ 154 (593)
+.|. ...+.....+|++++|+|++++......+.+..+...++|.+ +++||+|+.+..+.. ....++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~Dl~~~~~~~-~~~~~~ 169 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKCDKLTRQESI-NALRAT 169 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECGGGSCHHHHH-HHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEeccccCChhhHH-HHHHHH
Confidence 3333 334444455899999999999888788888888888888855 467999999864322 222333
Q ss_pred HHHHhhc---CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCCC
Q psy8869 155 RELLNKY---EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNR 207 (593)
Q Consensus 155 ~~~l~~~---~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~~ 207 (593)
.+.+... +. ....+++++||++| .++.+|+++|.+.++.+..
T Consensus 170 ~~~l~~~~~~~~-~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 170 QKSLDAYRDAGY-AGKLTVQLFSALKR----------TGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHHHHTC-CSCEEEEEEBTTTT----------BSHHHHHHHHHHHHC----
T ss_pred HHHHHhhhhccc-CCCCeEEEeecCCC----------cCHHHHHHHHHHhcCccCC
Confidence 3444332 11 13579999999998 7899999999988875543
No 40
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=2.5e-18 Score=173.58 Aligned_cols=165 Identities=19% Similarity=0.195 Sum_probs=119.4
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC-CeEEEEEecCCh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK-ARHYAHVDCPGH 85 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~iiDtpGh 85 (593)
..+.+.-.|+++|++|+|||||+++|++..... .....+.|.+.....+..+ +..+.||||||+
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i---------------~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI---------------ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC---------------CCSSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc---------------cCCCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 345677899999999999999999998542111 0112244544444455666 889999999998
Q ss_pred h----------hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHH-HHHHHHcCCCeEEEEEeecCCC-CHHHHHHHHHHH
Q psy8869 86 A----------DYIKNMITGAAQMDGAILVCSAADGPMPQTREH-ILLARQVGVPYIVVFLNKADMV-DDEELLELVEIE 153 (593)
Q Consensus 86 ~----------~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~-l~~~~~l~ip~iiVvvNK~Dl~-~~~~~~~~~~~~ 153 (593)
. .+...+..++..+|++++|+|++++...++... +..+...++|.++ ++||+|+. +.+.. .. .
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvil-V~NK~Dl~~~~~~~-~~---~ 144 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIV-VINKIDKIGPAKNV-LP---L 144 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEE-EEECGGGSSSGGGG-HH---H
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEE-EEECccCCCCHHHH-HH---H
Confidence 4 345667778889999999999999888888877 7777778888554 67999998 44322 22 2
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 154 ~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+..+.+.++ ...+++++||++| .++++|++.|...++.
T Consensus 145 ~~~l~~~~~---~~~~i~~vSA~~g----------~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 145 IDEIHKKHP---ELTEIVPISALKG----------ANLDELVKTILKYLPE 182 (308)
T ss_dssp HHHHHHHCT---TCCCEEECBTTTT----------BSHHHHHHHHHHHSCB
T ss_pred HHHHHHhcc---CCCeEEEEeCCCC----------CCHHHHHHHHHHhCcc
Confidence 233333332 2468999999998 7899999999988864
No 41
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=3.6e-19 Score=164.58 Aligned_cols=161 Identities=32% Similarity=0.395 Sum_probs=117.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|+.|+|||||+++|++..... ....++|.+.....+..++..+.+|||||+++|
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTE----------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAF 68 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSC----------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcccc----------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHHH
Confidence 4567899999999999999999998532111 011233334444456667888999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC---
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG--- 165 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--- 165 (593)
...+..++..+|++++|+|++++...++.+.+..+...++|.+ +++||+|+.+... + ++...+.......
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~i-lv~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 69 TTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPII-VAINKMDKPEANP--D----RVMQELMEYNLVPEEW 141 (178)
T ss_dssp SCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEE-EEEETTTSSCSCH--H----HHHHHHTTTTCCBTTT
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEE-EEEECccCCcCCH--H----HHHHHHHhcCcChhHc
Confidence 8777777889999999999999888889888888877888955 4679999986411 1 1122222222111
Q ss_pred -CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 -NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 -~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..++++++||++| .++++++++|.+.+
T Consensus 142 ~~~~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 142 GGDTIFCKLSAKTK----------EGLDHLLEMILLVS 169 (178)
T ss_dssp TSSEEEEECCSSSS----------HHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCC----------CCHHHHHHHHHHhh
Confidence 1368999999998 68899999887654
No 42
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=1.8e-18 Score=183.31 Aligned_cols=151 Identities=21% Similarity=0.267 Sum_probs=108.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh----
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---- 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh---- 85 (593)
...++|+++|++|+|||||+++|++.... ..+...|+|.+.....++.++..+.||||||+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~---------------~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE---------------EEC---------CCEEEEETTEEEEETTHHHHTCBT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce---------------eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCc
Confidence 35689999999999999999999854211 01124477887777778888889999999998
Q ss_pred ------hhhHHH-HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH-HHHHHHHHHHHHH
Q psy8869 86 ------ADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIREL 157 (593)
Q Consensus 86 ------~~~~~~-~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~-~~~~~~~~~~~~~ 157 (593)
++|... +..++..+|++++|+|++++...|+.+++..+...++| +++++||+|+.+.. ...+++..++.+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 316 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 316 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHh
Confidence 666543 34577899999999999999999999888888888888 45568999998642 2234444455555
Q ss_pred HhhcCCCCCCceEEEeccCcccc
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALE 180 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~ 180 (593)
+.... .+|++++||++|.+
T Consensus 317 l~~~~----~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 317 FQFLD----YAPILFMSALTKKR 335 (436)
T ss_dssp CGGGT----TSCEEECCTTTCTT
T ss_pred cccCC----CCCEEEEecccCCC
Confidence 54332 47899999999854
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.77 E-value=1.8e-18 Score=160.29 Aligned_cols=165 Identities=14% Similarity=0.198 Sum_probs=110.0
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
..+...++|+++|+.|+|||||+++|++...... .+...|.+.......+......+.||||||++
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT--------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCc--------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 3455679999999999999999999985421110 01112333333333333334578899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+|...+...+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+.... ...++.++++..
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~- 147 (181)
T 2efe_B 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKV---TAEDAQTYAQEN- 147 (181)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHT-
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccC---CHHHHHHHHHHc-
Confidence 998888888899999999999987432 3334444444443 455 5556899999754211 012334455443
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.++++++||++| .++++++++|.+.++.
T Consensus 148 ----~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 148 ----GLFFMETSAKTA----------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp ----TCEEEECCSSSC----------TTHHHHHHHHHHTCC-
T ss_pred ----CCEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 368999999998 7899999999887654
No 44
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.76 E-value=3.1e-18 Score=158.27 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=107.1
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEE
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYA 78 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~ 78 (593)
|+..++..+.+.++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.
T Consensus 3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (179)
T 2y8e_A 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQ 66 (179)
T ss_dssp ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCCSEEEEEEEEEETTEEEEEE
T ss_pred cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeEEEEEEEEECCeEEEEE
Confidence 45556666667899999999999999999999853211 01112333343333444444 5788
Q ss_pred EEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHH
Q psy8869 79 HVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEI 154 (593)
Q Consensus 79 iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~ 154 (593)
+|||||+++|...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..... ..+.
T Consensus 67 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~ 142 (179)
T 2y8e_A 67 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEG 142 (179)
T ss_dssp EEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSC---HHHH
T ss_pred EEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCC---HHHH
Confidence 99999999998888888889999999999987322 222333333332 3566 55568999987542110 1122
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+.+.. .++++++||++| .++++++++|.+.++
T Consensus 143 ~~~~~~~-----~~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 143 ERKAKEL-----NVMFIETSAKAG----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHH-----TCEEEEEBTTTT----------BSHHHHHHHHHHTCC
T ss_pred HHHHHHc-----CCeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 3333333 368999999998 689999999988664
No 45
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=7.2e-18 Score=169.31 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=111.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~-- 87 (593)
....+|+++|++|+|||||+++|++....... ...+.|.+.....+..++.++.||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs---------------~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS---------------PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC---------------SSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeec---------------CCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 34568999999999999999999854221100 0112222222223445678999999999766
Q ss_pred ------hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 88 ------YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 88 ------~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
|......++..+|++++|+|++++...++...+..+... ++|.++ ++||+|+.+.... +...+..
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~il-V~NK~Dl~~~~~~---~~~~~~~--- 142 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL-VGNKLDAAKYPEE---AMKAYHE--- 142 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEE-EEECGGGCSSHHH---HHHHHHH---
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEE-EEECcccCCchHH---HHHHHHH---
Confidence 566677788899999999999998777776666667766 788554 6799999865331 1112222
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+ . ...+++++||++| .++++|++.|...++
T Consensus 143 -~-~--~~~~~~~iSA~~g----------~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 143 -L-L--PEAEPRMLSALDE----------RQVAELKADLLALMP 172 (301)
T ss_dssp -T-S--TTSEEEECCTTCH----------HHHHHHHHHHHTTCC
T ss_pred -h-c--CcCcEEEEeCCCC----------CCHHHHHHHHHHhcc
Confidence 2 1 2357999999998 689999999988765
No 46
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.76 E-value=1.3e-18 Score=163.67 Aligned_cols=174 Identities=19% Similarity=0.212 Sum_probs=111.7
Q ss_pred CCcccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeee-----EEeeCCe
Q psy8869 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHI-----EYETKAR 75 (593)
Q Consensus 1 ~~~~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-----~~~~~~~ 75 (593)
|+........+.++|+++|+.|+|||||++.|.+............ .......|+...+. .++....
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~ 74 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVS--------LATEDERTLFFDFLPLDIGEVKGFKT 74 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEE--------EECSSCEEEEEEECCSSCCCSSSCEE
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccc--------cccccccceeeeecccccccccCCce
Confidence 4444455567789999999999999999977765322211110000 00001123322211 2223445
Q ss_pred EEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH---------cCCCeEEEEEeecCCCCHHHH
Q psy8869 76 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ---------VGVPYIVVFLNKADMVDDEEL 146 (593)
Q Consensus 76 ~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~---------l~ip~iiVvvNK~Dl~~~~~~ 146 (593)
.+.+|||||+++|...+...+..+|++|+|+|++++...+..+.+..+.. .++|. +++.||+|+.+..
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pi-ilv~NK~Dl~~~~-- 151 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPI-VIQVNKRDLPDAL-- 151 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCE-EEEEECTTSTTCC--
T ss_pred EEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCE-EEEEEchhccccc--
Confidence 78899999999999988889999999999999996554444444433322 36775 4567999997641
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 147 LELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...++.++++..++ .+++++||++| .++.+++++|.+.+
T Consensus 152 ---~~~~~~~~~~~~~~----~~~~~~Sa~~~----------~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 152 ---PVEMVRAVVDPEGK----FPVLEAVATEG----------KGVFETLKEVSRLV 190 (198)
T ss_dssp ---CHHHHHHHHCTTCC----SCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhcCC----ceEEEEecCCC----------cCHHHHHHHHHHHH
Confidence 11244555554432 28999999998 68999998887643
No 47
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=5.2e-18 Score=153.90 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=109.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh-----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~----- 87 (593)
.+|+++|+.|+|||||+++|.+.... ..+...+.|.+.....+..++..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 58999999999999999999854210 0112234555555566777788999999999887
Q ss_pred --hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 88 --YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 88 --~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
+...+...+..+|++++|+|++++......+....+...++|.+ +++||+|+.+.++ ++.++. .+++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~-------~~~~~~-~~~~-- 135 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI-LVATKVDDPKHEL-------YLGPLY-GLGF-- 135 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEE-EEEECCCSGGGGG-------GCGGGG-GGSS--
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEE-EEEECcccccchH-------hHHHHH-hCCC--
Confidence 45566677889999999999998876666666677777788854 5679999986521 222232 3332
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+++++||++| .++++++++|.+.+|
T Consensus 136 --~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 --GDPIPTSSEHA----------RGLEELLEAIWERLP 161 (161)
T ss_dssp --CSCEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CCeEEEecccC----------CChHHHHHHHHHhCc
Confidence 27999999998 789999999987664
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.76 E-value=4.7e-18 Score=157.07 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=108.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC---eEEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA---RHYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~~~iiDtpGh 85 (593)
.++.++|+++|++|+|||||+++|++.... .......|..... ..+..++ ..+.+|||||+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~--------------~~~~~t~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFG--------------KQYKQTIGLDFFL--RRITLPGNLNVTLQIWDIGGQ 66 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTT--------------HHHHHTTTSSEEE--EEEEETTTEEEEEEEEECTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCC--------------CCCCCceeEEEEE--EEEEeCCCCEEEEEEEECCCC
Confidence 457899999999999999999999864210 0011122222322 3333433 67899999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
++|...+...+..+|++++|+|+++... ......+..+.. .+.|.++++.||+|+.+..... ..+...+.+
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~ 143 (178)
T 2hxs_A 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQ 143 (178)
T ss_dssp CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHH
T ss_pred ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHH
Confidence 9998888888899999999999987432 222233333333 2677667778999987531110 112334444
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
..+ ++++++||++| .++++++++|.+.+..
T Consensus 144 ~~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 144 ENG-----FSSHFVSAKTG----------DSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHT-----CEEEEECTTTC----------TTHHHHHHHHHHHHTT
T ss_pred HcC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHHh
Confidence 433 58999999998 6899999999876643
No 49
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=1.9e-17 Score=155.48 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (593)
....++|+++|++|+|||||+++|++.... .......|.|.......+ +..+.+|||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFA 82 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEEE---CCcEEEEECCCCCcc
Confidence 446799999999999999999999854210 001112233433333322 23689999999
Q ss_pred ------hhhhHHHHHHhhhcC---CEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 85 ------HADYIKNMITGAAQM---DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 85 ------h~~~~~~~~~~~~~~---d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
++.|...+...+..+ |++++|+|++++...+..+.+..+...++|.+ +++||+|+.+..+. +....++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~-~~~~~~~~ 160 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI-VIATKADKIPKGKW-DKHAKVVR 160 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCGGGH-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCChHHH-HHHHHHHH
Confidence 777766555555555 99999999999877777666777777888855 56799999876332 22223344
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+.+. .. ...+++++||++| .++.+++++|.+.+
T Consensus 161 ~~~~---~~-~~~~~~~~Sa~~~----------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 161 QTLN---ID-PEDELILFSSETK----------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHT---CC-TTSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHc---cc-CCCceEEEEccCC----------CCHHHHHHHHHHHh
Confidence 3332 21 3578999999998 68999999987754
No 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.75 E-value=1e-17 Score=156.66 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=109.8
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
...++.++|+++|+.|+|||||+++|++..... ....|+......++..+..+.||||||++
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNE------------------DMIPTVGFNMRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC------------------SCCCCCSEEEEEEEETTEEEEEEEECCSH
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCC------------------ccCCCCceeEEEEEeCCEEEEEEECCCCH
Confidence 345678999999999999999999998642110 00112222233456678899999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
+|...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+.... + ++.+.+...
T Consensus 79 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~~~~~~~~~ 152 (188)
T 1zd9_A 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDE-K----ELIEKMNLS 152 (188)
T ss_dssp HHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCH-H----HHHHHTTGG
T ss_pred hHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCH-H----HHHHHhChh
Confidence 99988888889999999999998742 2333334433332 4677 4556899999864111 1 122222211
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
......++++++||++| .++++++++|.+.+.
T Consensus 153 ~~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 AIQDREICCYSISCKEK----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp GCCSSCEEEEECCTTTC----------TTHHHHHHHHHHTCC
T ss_pred hhccCCeeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 12223578999999998 689999999988664
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.75 E-value=4.6e-18 Score=155.59 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=109.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
+.+.++|+++|+.|+|||||+++|++..... ..+...|.+.......+......+.+|||||+++|
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHE--------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 3467999999999999999999998632110 01112244444444444444567889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
...+...+..+|++++|+|+++... ......+..+... ++| ++++.||+|+.+..... ..+..++.+..
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~--- 141 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD---FQEAQSYADDN--- 141 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHT---
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccC---HHHHHHHHHHc---
Confidence 8888888899999999999987432 2233334444433 455 45567999986531110 11233444433
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++++++++|.+.++
T Consensus 142 --~~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 142 --SLLFMETSAKTS----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp --TCEEEECCTTTC----------TTHHHHHHHHHHTSC
T ss_pred --CCeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 468999999998 789999999987664
No 52
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=8.8e-18 Score=156.85 Aligned_cols=163 Identities=17% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|+.|+|||||+++|++.... .+ ..|+......+..++..+.+|||||+++|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------~~------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-------HT------------SPTIGSNVEEIVINNTRFLMWDIGGQESL 73 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-------EE------------ECCSCSSCEEEEETTEEEEEEECCC----
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-------cC------------cCCCccceEEEEECCEEEEEEECCCCHhH
Confidence 467899999999999999999999853211 00 01222223344557788999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+....+
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~ 147 (187)
T 1zj6_A 74 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSI 147 (187)
T ss_dssp CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHHTGGGC
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCC-HH----HHHHHhChhhh
Confidence 887777888999999999998863 3334444444433 3566 556689999976311 11 22233322212
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPN 206 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~~ 206 (593)
....++++++||++| .++++++++|.+.++.+.
T Consensus 148 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 148 KDHQWHIQACCALTG----------EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp CSSCEEEEECBTTTT----------BTHHHHHHHHHHHHCC--
T ss_pred cCCCcEEEEccCCCC----------cCHHHHHHHHHHHHHHHh
Confidence 223578999999998 789999999988765443
No 53
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=6.9e-18 Score=158.36 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=112.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH--------------NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT--------------TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 467999999999999999999998642110 011123455555545555566788999999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+.... ...++.++++..
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v---~~~~~~~~~~~~---- 158 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV---PLKDAKEYAESI---- 158 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTT----
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHc----
Confidence 888888899999999999987432 2233344444443 566 5556899998753111 012344455543
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.++++++||++| .++++++++|.+.++.
T Consensus 159 -~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 159 -GAIVVETSAKNA----------INIEELFQGISRQIPP 186 (192)
T ss_dssp -TCEEEECBTTTT----------BSHHHHHHHHHHTCC-
T ss_pred -CCEEEEEeCCCC----------cCHHHHHHHHHHHHHh
Confidence 368999999998 7899999999887653
No 54
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=4.8e-18 Score=181.13 Aligned_cols=162 Identities=22% Similarity=0.266 Sum_probs=118.5
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (593)
....++|+++|++|+|||||+++|++.... ..+...|+|.+.....++.++..+.||||||
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTE---------------EECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCcc---------------ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 346789999999999999999999853211 0111336777776677788889999999999
Q ss_pred ------hhhhHHH-HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH-HHHHHHHHHHHHH
Q psy8869 85 ------HADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD-EELLELVEIEIRE 156 (593)
Q Consensus 85 ------h~~~~~~-~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~-~~~~~~~~~~~~~ 156 (593)
+++|... +..++..+|++++|+|++++...|+.+++..+...++|. ++|+||+|+.+. +...+++.+.+++
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~~~ 335 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAV-VIVVNKWDAVDKDESTMKEFEENIRD 335 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGGSCCCSSHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCE-EEEEEChhcCCCchHHHHHHHHHHHH
Confidence 6778655 345778999999999999999999999999999999885 456899999864 2334455555666
Q ss_pred HHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.+...+ .+|++++||++| .++++|++.+..
T Consensus 336 ~~~~~~----~~~~~~~SA~~g----------~gv~~l~~~i~~ 365 (456)
T 4dcu_A 336 HFQFLD----YAPILFMSALTK----------KRIHTLMPAIIK 365 (456)
T ss_dssp HCGGGT----TSCEEECCTTTC----------TTGGGHHHHHHH
T ss_pred hcccCC----CCCEEEEcCCCC----------cCHHHHHHHHHH
Confidence 555443 478999999998 455555555544
No 55
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.74 E-value=3.8e-17 Score=153.18 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=112.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (593)
....++|+++|+.|+|||||+++|++...... ....|.|....... .+..+.+|||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV---------------SKTPGKTRSINFYL---VNSKYYFVDLPGYGYA 81 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC---------------CSSCCCCCCEEEEE---ETTTEEEEECCCBSSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccc---------------cCCCCCccCeEEEE---ECCcEEEEECCCCccc
Confidence 34568999999999999999999985421100 01113333322221 234588999999
Q ss_pred ------hhhhHHHHHHh---hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 85 ------HADYIKNMITG---AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 85 ------h~~~~~~~~~~---~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
++.|...+... ...+|++++|+|++.+......+.+..+...++|.++ ++||+|+.+.++. +....++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~-v~nK~Dl~~~~~~-~~~~~~~~ 159 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTI-VLTKMDKVKMSER-AKKLEEHR 159 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCGGGH-HHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEE-EEEChhcCChHHH-HHHHHHHH
Confidence 55565444443 4455999999999988777777777888888999554 6799999875332 33334566
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+++...+ .++++++||++| .++++++++|.+.++
T Consensus 160 ~~~~~~~----~~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 160 KVFSKYG----EYTIIPTSSVTG----------EGISELLDLISTLLK 193 (195)
T ss_dssp HHHHSSC----CSCEEECCTTTC----------TTHHHHHHHHHHHHC
T ss_pred HHHhhcC----CCceEEEecCCC----------CCHHHHHHHHHHHhh
Confidence 6665433 468999999998 789999999987654
No 56
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=9.9e-18 Score=153.43 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=109.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 467999999999999999999998642100 011123444444444444445678899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... ......+..+... ++| ++++.||+|+.+..+.. ..+...+.+..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~---- 141 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVM---ERDAKDYADSI---- 141 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHT----
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccC---HHHHHHHHHHc----
Confidence 888888889999999999987433 2223334444443 344 55567999997642111 11233444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++++++++|.+.++
T Consensus 142 -~~~~~~~Sa~~~----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 142 -HAIFVETSAKNA----------ININELFIEISRRIP 168 (170)
T ss_dssp -TCEEEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred -CCEEEEEeCCCC----------cCHHHHHHHHHHHHh
Confidence 368999999998 689999999987664
No 57
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=5.2e-18 Score=155.22 Aligned_cols=163 Identities=14% Similarity=0.160 Sum_probs=106.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 46899999999999999999998542110 0011223333333333433345788999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
.+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.....+....+..++.+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----- 141 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEK----- 141 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHc-----
Confidence 88888899999999999987432 222223333332 2566 5556899998643100000111233344433
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++.+++++|.+.++
T Consensus 142 ~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 142 GLLFFETSAKTG----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp TCEEEECCTTTC----------TTHHHHHHHHHTTSC
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 358999999998 789999999987653
No 58
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=157.05 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=107.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC----------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45689999999999999999999853211 11122344444444455554 5688999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+...... .+...+.+.++
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 152 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG- 152 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT-
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC-
Confidence 98888888999999999999987332 2223333334333 566 455679999976421111 12344444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 153 ----~~~~~~Sa~~g----------~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 ----IPFLETSAKNA----------TNVEQSFMTMAAEI 177 (196)
T ss_dssp ----CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CcEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 68888888876654
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=2.3e-17 Score=152.18 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=105.5
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~ 86 (593)
..+.++|+++|++|+|||||+++|++.... .+....++.+.....+..++ ..+.+|||||++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 456799999999999999999999853210 11112233333333444444 478899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH-------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~-------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
+|...+...+..+|++++|+|+++....+. ...+..+.. .++| +++++||+|+.+.+... .++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~----~~~~~~~ 142 (177)
T 1wms_A 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVST----EEAQAWC 142 (177)
T ss_dssp GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCH----HHHHHHH
T ss_pred hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCH----HHHHHHH
Confidence 999988888899999999999987432221 222222221 4567 45568999997432111 1233344
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+.. ..++++++||++| .++++++++|.+.+
T Consensus 143 ~~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 143 RDN----GDYPYFETSAKDA----------TNVAAAFEEAVRRV 172 (177)
T ss_dssp HHT----TCCCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred Hhc----CCceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 322 2468999999998 68999999887654
No 60
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.6e-17 Score=153.78 Aligned_cols=162 Identities=13% Similarity=0.120 Sum_probs=100.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
..++.++|+++|+.|+|||||+++|++..... .+....++.+.....+..++ ..+.+|||||+
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---------------GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCC---------------CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCC---------------CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 34678999999999999999999998642110 00111222333323333444 47889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
++|...+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+..... ..+...+.+..
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 146 (180)
T 2g6b_A 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK---REDGEKLAKEY 146 (180)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccC---HHHHHHHHHHc
Confidence 9999888888999999999999987432 222333333433 3566 55568999998532110 11223344443
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+ ++++++||++| .++++++++|.+.+.
T Consensus 147 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 147 G-----LPFMETSAKTG----------LNVDLAFTAIAKELK 173 (180)
T ss_dssp T-----CCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred C-----CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 3 57999999998 689999999877553
No 61
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=3.2e-17 Score=149.23 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=104.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNM 92 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~ 92 (593)
++|+++|+.|+|||||+++|++..... . ..|+......++..+..+.+|||||+++|...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------------C-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------------c-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 589999999999999999998642110 0 012222233455577889999999999999888
Q ss_pred HHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy8869 93 ITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGND 167 (593)
Q Consensus 93 ~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (593)
...+..+|++++|+|+++... ....+.+..+.. .++| ++++.||+|+.+... .+ ++.+.+.........
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AA----EITDKLGLHSLRHRN 135 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCSSCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCC-HH----HHHHHhCcccccCcc
Confidence 888999999999999987432 222333333322 2566 555689999976411 11 122222211122235
Q ss_pred ceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 168 IPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 168 ~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++++++||++| .++++++++|.+.+.
T Consensus 136 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQATCATSG----------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred EEEEEcccCCC----------cCHHHHHHHHHHHHh
Confidence 78999999998 689999999987654
No 62
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.73 E-value=2.9e-17 Score=150.53 Aligned_cols=159 Identities=17% Similarity=0.082 Sum_probs=107.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|+.|+|||||+++|+..... . ...|+......+..+...+.+|||||+++|.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV------------T-------TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC------------C-------CCCCSSEEEEEEEETTEEEEEEEECCCGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------C-------cCCcCccceEEEEECCEEEEEEECCCChhhh
Confidence 45699999999999999999999753210 0 0112222233455568889999999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++... ....+.+..... .++| +++++||+|+.+.... +.+ .+.+......
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~----~~~~~~~~~~ 139 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTS-SEM----ANSLGLPALK 139 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-HHH----HHHHTGGGCT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCH-HHH----HHHhCchhcc
Confidence 888888889999999999987532 333333333332 3666 5556899999864211 112 2222211122
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
...++++++||++| .++++++++|.+.++
T Consensus 140 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 140 DRKWQIFKTSATKG----------TGLDEAMEWLVETLK 168 (171)
T ss_dssp TSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEECcCCCC----------cCHHHHHHHHHHHHh
Confidence 23578999999998 689999999877553
No 63
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.73 E-value=1.2e-17 Score=157.27 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=108.4
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
....+..+|+++|+.|+|||||+++|++...... ....|+......++.....+.||||||++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----------------HITATVGYNVETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC---------------------CCCCCSSEEEEEEEETTEEEEEEEECCSG
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-----------------ccccccceeEEEEEeCCEEEEEEECCCCH
Confidence 4556789999999999999999999975321110 00112222333456778899999999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHHc-----------CCCeEEEEEeecCCCCHHHHHHHHHHHH
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQV-----------GVPYIVVFLNKADMVDDEELLELVEIEI 154 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~l-----------~ip~iiVvvNK~Dl~~~~~~~~~~~~~~ 154 (593)
+|...+...+..+|++|+|+|+++.. +....+.+..+... ++|. ++++||+|+.+... .+.+...+
T Consensus 75 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~~~~~-~~~~~~~~ 152 (199)
T 4bas_A 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF-LFFANKMDAAGAKT-AAELVEIL 152 (199)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-EEEEECTTSTTCCC-HHHHHHHH
T ss_pred hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-EEEEECcCCCCCCC-HHHHHHHh
Confidence 99988888889999999999999854 23333444444333 7775 55679999986521 11122222
Q ss_pred H--HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 155 R--ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 155 ~--~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. .+.+. ..++++++||++| .++++++++|.+.+.
T Consensus 153 ~~~~~~~~-----~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 153 DLTTLMGD-----HPFVIFASNGLKG----------TGVHEGFSWLQETAS 188 (199)
T ss_dssp THHHHHTT-----SCEEEEECBTTTT----------BTHHHHHHHHHHHHH
T ss_pred cchhhccC-----CeeEEEEeeCCCc----------cCHHHHHHHHHHHHH
Confidence 1 11121 3578999999998 689999999877553
No 64
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.5e-17 Score=155.79 Aligned_cols=160 Identities=18% Similarity=0.119 Sum_probs=106.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
.....++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.||||||+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 34567999999999999999999998642111 1111233333333444444 46889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
++|...+...+..+|++++|+|+++... ......+..+... ++| ++++.||+|+.+..+.. ..+...+.+..
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~ 161 (201)
T 2ew1_A 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS---QQRAEEFSEAQ 161 (201)
T ss_dssp GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHc
Confidence 9999988888999999999999987422 2223334434332 455 55568999987531110 11223333333
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 162 -----~~~~~~~Sa~~g----------~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 162 -----DMYYLETSAKES----------DNVEKLFLDLACRL 187 (201)
T ss_dssp -----TCCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 357999999998 68889988887654
No 65
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=3.1e-17 Score=152.42 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=107.1
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
++..++|+++|+.|+|||||+++|++... .. .....|. ....+..++..+.+|||||+++|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-------~~--------~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~ 73 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-------SH--------ITPTQGF----NIKSVQSQGFKLNVWDIGGQRKI 73 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-------EE--------EEEETTE----EEEEEEETTEEEEEEECSSCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-------Cc--------ccCcCCe----EEEEEEECCEEEEEEECCCCHHH
Confidence 46789999999999999999999974310 00 0011122 22234556788999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++... ....+.+..+. ..++| ++++.||+|+.+... .+ ++.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~~~~~~~~~~~ 147 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-AS----EIAEGLNLHTI 147 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCC-HH----HHHHHTTGGGC
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCC-HH----HHHHHhCchhc
Confidence 9888888899999999999987432 22333333322 13577 455679999976421 11 22222221112
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
....++++++||++| .++++++++|.+.+.
T Consensus 148 ~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 148 RDRVWQIQSCSALTG----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp CSSCEEEEECCTTTC----------TTHHHHHHHHHHTC-
T ss_pred cCCceEEEEccCCCC----------CCHHHHHHHHHHHHH
Confidence 223578999999998 789999999987654
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.73 E-value=2.4e-17 Score=153.33 Aligned_cols=166 Identities=16% Similarity=0.104 Sum_probs=106.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|++|+|||||+++|++....... ....+... .....+......+.+|||||+++|.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--------------IPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSC--------------CCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCccccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 45789999999999999999999853211000 00001111 1112222223456699999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhhH--HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHH---------HHHHH
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELVE---------IEIRE 156 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt~--e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~---------~~~~~ 156 (593)
..+...+..+|++++|+|+++...-+.. ..+..+... ++|. ++++||+|+.+.....+.+. .+...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCE-EEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 7777788899999999999874322222 233344443 7775 45679999876432222211 13334
Q ss_pred HHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
+.+..+. .+++++||++| .++++++++|.+.+..+
T Consensus 147 ~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 147 MAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHSCC
T ss_pred HHHhcCC----cEEEEecCCCc----------cCHHHHHHHHHHHHhcc
Confidence 4444432 48999999998 78999999988776544
No 67
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.73 E-value=1.5e-17 Score=155.84 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=106.0
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
....+.++|+++|+.|+|||||+++|++.... .......|.+.......+......+.||||||++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCC--------------C-----CCSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCCCCcccceeEEEEEEECCEEEEEEEEECCCch
Confidence 34557799999999999999999999863211 0011122333333333333233578899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+|...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+..... ..+...+.+..
T Consensus 82 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~- 156 (191)
T 2a5j_A 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVK---REEGEAFAREH- 156 (191)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHH-
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccC---HHHHHHHHHHc-
Confidence 998777778889999999999987332 2223344444432 566 55568999997531110 11233444443
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 157 ----~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 157 ----GLIFMETSAKTA----------CNVEEAFINTAKEI 182 (191)
T ss_dssp ----TCEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 358999999998 68999998886543
No 68
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=154.50 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=107.9
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
...+.++|+++|+.|+|||||+++|++...... ....|+......+..++..+.||||||+++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ-----------------NILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCS-----------------SCCCCSSEEEEEEECSSCEEEEEEECCSTT
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------CcCCccceeEEEEEECCEEEEEEECCCCHH
Confidence 345679999999999999999999975421000 001222233344556678999999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|...+...+..+|++++|+|+++.. .....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+..
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~ 153 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVT-SV----KVSQLLCL 153 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCC-HH----HHHHHHTG
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCC-HH----HHHHHhCh
Confidence 9888888889999999999998742 2233334433333 3667 455689999976411 11 23333321
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+....++++++||++| .++++++++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 154 ENIKDKPWHICASDAIKG----------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGCCSSCEEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred hhccCCceEEEEccCCCC----------cCHHHHHHHHHHHHH
Confidence 122223578999999998 689999999987653
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.73 E-value=2.7e-17 Score=156.02 Aligned_cols=163 Identities=14% Similarity=0.060 Sum_probs=105.1
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (593)
....+.++|+++|+.|+|||||+++|+....... ....+.+.....+..++ ..+.||||||
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 87 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAG 87 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEEEECC
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------cCCeecceeEEEEEECCEEEEEEEEECCC
Confidence 3456779999999999999999999985321100 01122222222233333 4556999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhH--HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------H
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------E 151 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~--e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~ 151 (593)
+++|...+...+..+|++++|+|+++....+.. ..+..+... ++|. ++++||+|+.+.....+.. .
T Consensus 88 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 88 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDDKDTIEKLKEKKLTPITY 166 (204)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECHHHHTCHHHHHHHHHTTCCCCCH
T ss_pred chhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhhccchhhhhhhhccccccccH
Confidence 999988888888999999999999974322222 233344444 7775 4567999997653322221 1
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+...+.+.++ ..+++++||++| .++++++++|.+.
T Consensus 167 ~~~~~~~~~~~----~~~~~~~SA~~g----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIG----AVKYLECSALTQ----------RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTT----CSEEEECCTTTC----------TTHHHHHHHHHHT
T ss_pred HHHHHHHHhcC----CcEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 23444555544 357999999998 7899999998764
No 70
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=3.1e-17 Score=151.47 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=107.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
....++|+++|+.|+|||||+++|++..... ......+.+.......+......+.+|||||+++|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--------------DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 3467999999999999999999998642110 01112233443433334333457889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
...+...+..+|++++|+|+++....+. ...+..+.. .++| +++++||+|+.+.... ...++.++++..
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~--- 150 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEEN--- 150 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHT---
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHc---
Confidence 9888888999999999999987432222 222333333 3556 5556899999653111 012344455543
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 151 --~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 151 --GLLFLEASAKTG----------ENVEDAFLEAAKKI 176 (179)
T ss_dssp --TCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68999999887644
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=156.36 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=105.5
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~ 86 (593)
....++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.+|||||++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 345789999999999999999999753211 11112223333333344444 578899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+|...+...+..+|++++|+|+++....+. ...+..+... ++| +++++||+|+.+..+.. ..+..++.+.+.
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~~~~~~ 162 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIT---RQQGEKFAQQIT 162 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHTST
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC
Confidence 999988888999999999999988433222 2333444433 566 55568999987532110 112334444321
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+++++||++| .++++++++|.+.+
T Consensus 163 ----~~~~~~~SA~~g----------~gi~~l~~~l~~~i 188 (192)
T 2il1_A 163 ----GMRFCEASAKDN----------FNVDEIFLKLVDDI 188 (192)
T ss_dssp ----TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CCeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 468999999998 68999999887643
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=4.1e-17 Score=152.80 Aligned_cols=159 Identities=21% Similarity=0.146 Sum_probs=105.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee-eeEEeeC-----------CeE
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA-HIEYETK-----------ARH 76 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~-----------~~~ 76 (593)
....++|+++|++|+|||||+++|++..... +....++.+.. ...+..+ ...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS----------------KFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCc----------------CcccccceeeeeEEEEEecCCcccccccCcEEE
Confidence 4567999999999999999999998632110 00111222222 1222222 357
Q ss_pred EEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHH
Q psy8869 77 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVE 151 (593)
Q Consensus 77 ~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~ 151 (593)
+.+|||||+++|...+...+..+|++++|+|+++....+ ....+..+.. .++| +++++||+|+.+..... .
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~ 147 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVK---E 147 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSC---H
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---H
Confidence 889999999999999999999999999999998743222 2333433333 3667 45568999997531110 1
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++.++.+..+ ++++++||++| .++++++++|.+.+
T Consensus 148 ~~~~~~~~~~~-----~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 148 EEARELAEKYG-----IPYFETSAANG----------TNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHHHT-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 23344444443 57999999998 68889988887644
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=155.50 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=109.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP--------------AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC--------------CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc--------------ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 356899999999999999999998642111 001122444445555555567789999999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..... ..+...+.+..+
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 159 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVP---TEKGQLLAEQLG--- 159 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC---
Confidence 999999999999999999987322 223334444444 3566 55568999986531111 112334444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++.+++++|.+.+
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 --FDFFEASAKEN----------ISVRQAFERLVDAI 184 (191)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 58999999998 68999998887644
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=156.55 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=107.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
.....++|+++|++|+|||||+++|++...... .....|.+.......+......+.||||||+++
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD--------------SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS--------------CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 345679999999999999999999986421100 011123344333344444456788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+.... ...+...+.+..
T Consensus 87 ~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~-- 160 (193)
T 2oil_A 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREV---PTEEARMFAENN-- 160 (193)
T ss_dssp TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHT--
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCccccccc---CHHHHHHHHHHc--
Confidence 98888888899999999999987432 2223334444433 555 5556899998753111 011334444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++++||++| .++.+++++|.+.
T Consensus 161 ---~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 185 (193)
T 2oil_A 161 ---GLLFLETSALDS----------TNVELAFETVLKE 185 (193)
T ss_dssp ---TCEEEEECTTTC----------TTHHHHHHHHHHH
T ss_pred ---CCEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 368999999998 6889999888654
No 75
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.72 E-value=5e-18 Score=168.53 Aligned_cols=156 Identities=24% Similarity=0.358 Sum_probs=109.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|++|+|||||+++|++..... ....|+|.+.....++..+..+.+|||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v----------------~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV----------------GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEE----------------EECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCccc----------------CCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 45899999999999999999998642111 11236777777777888888999999999877541
Q ss_pred ---------H---HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 91 ---------N---MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 91 ---------~---~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
. .......+|++++|+|+++ .......+..+..+++|.+ +++||+|+.+.... ......+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~i-vv~NK~Dl~~~~~~----~~~~~~l~ 138 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDIAEKQNI----RIEIDALS 138 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEE-EEEECHHHHHHTTE----EECHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEE-EEEECccchhhhhH----HHHHHHHH
Confidence 1 1112358999999999987 2334444556667799955 56899997643110 01122333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+.++ +|++++||++| .|+++|+++|.+.++.
T Consensus 139 ~~lg-----~~~i~~SA~~g----------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRG----------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHT-----SCEEECCCGGG----------HHHHHHHHHHHTCCCC
T ss_pred HhcC-----CCEEEEEcCCC----------CCHHHHHHHHHHHHhc
Confidence 3333 68999999998 6899999999887653
No 76
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=2.4e-17 Score=153.10 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=105.4
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
...+.++|+++|+.|+|||||+++|++..... + ..|+......+..++..+.+|||||+++
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------~------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-------T------------SPTIGSNVEEIVINNTRFLMWDIGGQES 77 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEE-------E------------ECCSSSSCEEEEETTEEEEEEEESSSGG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCc-------c------------CCcCceeeEEEEECCEEEEEEECCCCHh
Confidence 34567999999999999999999998542100 0 0111122233455778899999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|...+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 78 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~ 151 (181)
T 2h17_A 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTS 151 (181)
T ss_dssp GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGG
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCC-HH----HHHHHhCccc
Confidence 98888888899999999999998533 333444444432 4566 555689999976311 11 2223322212
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
.....++++++||++| .++++++++|.+
T Consensus 152 ~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~ 179 (181)
T 2h17_A 152 IKDHQWHIQACCALTG----------EGLCQGLEWMMS 179 (181)
T ss_dssp CCSSCEEEEECBTTTT----------BTHHHHHHHHHT
T ss_pred ccCCceEEEEccCCCC----------cCHHHHHHHHHh
Confidence 2223578999999998 689999998865
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=1.3e-17 Score=155.92 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=108.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
+..++|+++|+.|+|||||+++|++..... ......|.+.......+......+.+|||||+++|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 356899999999999999999998542110 001122444444444444445678899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+..... ..+..++.+.++
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 158 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVP---AEDGRRLADDLG--- 158 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCC---HHHHHHHHHHcC---
Confidence 888888889999999999987422 2333444444443 566 55568999997532110 123344444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 159 --~~~~~~Sa~~g----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 --FEFFEASAKEN----------INVKQVFERLVDVI 183 (189)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 58999999998 68999999887654
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=2.7e-17 Score=154.07 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=105.1
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
...+.++|+++|++|+|||||+++|++..... ...|+......+..++..+.+|||||+++
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-------------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCC-------------------CCCCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCc-------------------cccCCCCCeEEEEECCEEEEEEECCCCHH
Confidence 34567899999999999999999998532110 01122223345566778899999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|...+...+..+|++++|+|+++... ....+.+..+.. .++| ++++.||+|+.+. ... .++.+.+....
T Consensus 80 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~ 153 (190)
T 1m2o_B 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA-VSE----AELRSALGLLN 153 (190)
T ss_dssp GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC-CCH----HHHHHHTTCSS
T ss_pred HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC-CCH----HHHHHHhCCcc
Confidence 98877778889999999999998532 223333333332 4667 5556899999752 111 12333333221
Q ss_pred -------CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 163 -------FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 163 -------~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.....++++++||++| .++++++++|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 154 TTGSQRIEGQRPVEVFMCSVVMR----------NGYLEAFQWLSQY 189 (190)
T ss_dssp CCC---CCSSCCEEEEECBTTTT----------BSHHHHHHHHHTT
T ss_pred ccccccccccceEEEEEeECCcC----------CCHHHHHHHHHhh
Confidence 0113578999999998 7899999998754
No 79
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=153.78 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=106.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~ 86 (593)
..+.++|+++|++|+|||||+++|++.... .+...+++.+.....+..++ ..+.+|||||++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 356799999999999999999999743111 11122344444444455555 678899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
+|...+...+..+|++++|+|+++....+. ...+..+... ++| +++++||+|+.+..... ..+...+....+
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 144 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVE---TEDAYKFAGQMG- 144 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccC---HHHHHHHHHHcC-
Confidence 998888888899999999999988432222 2223333222 356 55668999987542110 012333444433
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 145 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 ----IQLFETSAKEN----------VNVEEMFNCITELV 169 (181)
T ss_dssp ----CCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 68999999887654
No 80
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=4.9e-17 Score=153.60 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=75.6
Q ss_pred eEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH-cCCCeEEEEEeecCCCCHHHHHHHHHH
Q psy8869 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEI 152 (593)
Q Consensus 75 ~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~-l~ip~iiVvvNK~Dl~~~~~~~~~~~~ 152 (593)
..+.||||||+++|...+...+..+|++++|+|++++...+. ...+..+.. .+.| +++++||+|+...+... .
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~~----~ 167 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQVDI----L 167 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSCH----H
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccCCH----H
Confidence 678999999999998888888899999999999988533222 333333333 4555 66678999932221111 2
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++.++++.. .++++++||++| .++++++++|.+.+
T Consensus 168 ~~~~~~~~~-----~~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 168 EVQKYAQDN-----NLLFIQTSAKTG----------TNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHHHHT-----TCEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 344555543 368999999998 68999998886543
No 81
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=149.98 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~- 88 (593)
++.++|+++|++|+|||||+++|++...... ....|.+.......+......+.+|||||++.+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL---------------HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc---------------cCccccceeEEEEEECCEEEEEEEEecCCCCccc
Confidence 4578999999999999999999985421110 012244443333333333346789999999884
Q ss_pred -HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 89 -IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 89 -~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
.......+..+|++++|+|+++... ....+.+..+... ++| +++++||+|+.+..+.. ..+...+....
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~- 141 (175)
T 2nzj_A 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVS---VEEGRACAVVF- 141 (175)
T ss_dssp -CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHH-
T ss_pred hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccC---HHHHHHHHHHc-
Confidence 3334445678999999999987322 2222333334433 677 45568999997642110 01223333333
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 142 ----~~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 142 ----DCKFIETSATLQ----------HNVAELFEGVVRQL 167 (175)
T ss_dssp ----TSEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CCeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68999999887654
No 82
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=3.3e-17 Score=149.27 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=101.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|++|+|||||+++|++..... .. ....+ +.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~--~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE------------KY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS------------CC--CTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc------------cC--CCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 46899999999999999999998642110 00 00111 11122222222334588999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..+.. ..+...+.+..+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 139 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVS---SSEGRALAEEWG--- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCC---HHHHHHHHHHhC---
Confidence 88888899999999999987322 112222222222 3677 45568999986532111 112334444433
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 140 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 140 --CPFMETSAKSK----------TMVDELFAEIVRQM 164 (167)
T ss_dssp --SCEEEECTTCH----------HHHHHHHHHHHHHH
T ss_pred --CCEEEecCCCC----------cCHHHHHHHHHHHH
Confidence 57999999998 68999999887643
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=155.30 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=102.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|+.|+|||||+++|++.... .......|.+.......++.....+.||||||+++|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--------------ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch
Confidence 456799999999999999999999854210 001111233333333333333456889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH---cCCCeEEEEEeecCCCCHHHH---HHHHHHHHHHHHhhc
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKADMVDDEEL---LELVEIEIRELLNKY 161 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~---~~~~~~~~~~~l~~~ 161 (593)
...+...+..+|++++|+|+++....+ ....+..+.. .++| +++++||+|+.+.... .+....+...+.+..
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 999888899999999999998743322 2333333333 2677 4556899998632110 000112333444443
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 170 -----~~~~~~~SA~~g----------~gv~el~~~l~~~i 195 (199)
T 2p5s_A 170 -----GALFCETSAKDG----------SNIVEAVLHLAREV 195 (199)
T ss_dssp -----TCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CCeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 358999999998 68999999987654
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=4.3e-17 Score=151.88 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=107.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|++|+|||||+++|++.. . .. ...|+......+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~-----~~------------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--V-----DT------------ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--C-----SS------------CCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--C-----Cc------------ccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 678999999999999999999998532 0 00 0111122223445578899999999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 150 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALS-CN----AIQEALELDSIR 150 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCC-HH----HHHHHhChhhcc
Confidence 888888899999999999987532 333334433332 3566 556689999976421 11 222222211122
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
...++++++||++| .++++++++|.+.++
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 151 SHHWRIQGCSAVTG----------EDLLPGIDWLLDDIS 179 (186)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 23578999999998 689999999887654
No 85
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.72 E-value=6e-17 Score=153.16 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=105.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|+.|+|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS----------------ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC----------------CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45689999999999999999999853210 11111122223233344444 5788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.... -..++.++++..++
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREV---SLAEAQSLAEHYDI 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccccc---CHHHHHHHHHHcCC
Confidence 99988888999999999999987322 222333434443 3466 5556899999753111 01234445555432
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+++++||++| .++++++++|.+.+.
T Consensus 167 ----~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 167 ----LCAIETSAKDS----------SNVEEAFLRVATELI 192 (201)
T ss_dssp ----SEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 28999999998 689999998876553
No 86
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=4.1e-17 Score=164.06 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=109.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh-hhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA-DYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~-~~~ 89 (593)
+..+|+++|++|+|||||+++|++........ ..+.|.+.....+..++..+.|+||||+. ++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~---------------~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR---------------KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC---------------CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCC---------------CCCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 45689999999999999999999642211000 01222222222345577889999999987 332
Q ss_pred H--------HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC-HHHHHHHHHHHHHHHHhh
Q psy8869 90 K--------NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD-DEELLELVEIEIRELLNK 160 (593)
Q Consensus 90 ~--------~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~-~~~~~~~~~~~~~~~l~~ 160 (593)
. ....++..+|++++|+|+++ ...++.+.+..+...+.|.++ ++||+|+.+ ... +...+.++.+.
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~il-vlNK~D~~~~~~~----~~~~l~~l~~~ 145 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVIL-AVNKVDNVQEKAD----LLPHLQFLASQ 145 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEE-EEESTTTCCCHHH----HHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEE-EEECcccCccHHH----HHHHHHHHHHh
Confidence 2 12345568899999999988 777887777777767889655 579999987 322 22234444444
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+++ .+++++||++| .++.+|++.+...+|.
T Consensus 146 ~~~----~~~i~iSA~~g----------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 146 MNF----LDIVPISAETG----------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SCC----SEEEECCTTTT----------TTHHHHHHHHHTTCCB
T ss_pred cCc----CceEEEECCCC----------CCHHHHHHHHHHhCCc
Confidence 432 37999999998 6899999999887763
No 87
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=4.2e-17 Score=148.77 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=102.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|++|+|||||+++|++...... . ....+... .....++.....+.+|||||+++|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~------------~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEK------------Y--DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTA 66 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCS------------C--CCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC------------C--CCCccceE-EEEEEECCEEEEEEEEECCChHHHHH
Confidence 468999999999999999999985311000 0 00001111 11222333455788999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.... ...+...+.+.++
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 139 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV---GKEQGQNLARQWC--- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC---CHHHHHHHHHHcc---
Confidence 88888889999999999987321 122222322222 3677 4556899999753211 0123334444432
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+++++||++| .++++++++|.+.+
T Consensus 140 -~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 140 -NCAFLESSAKSK----------INVNEIFYDLVRQI 165 (167)
T ss_dssp -SCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred -CCcEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 478999999998 68999999987644
No 88
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=6.2e-17 Score=148.27 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=103.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|+.|+|||||+++|++....... ....+.+.. ...........+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESY--------------IPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPA 66 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSC--------------CCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCccccEE-EEEEECCEEEEEEEEECCCchhhHH
Confidence 4689999999999999999999853211000 000111111 1122222335688999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
.+...+..+|++++|+|+++.. ..+....+..+.. .++| +++++||+|+.+..+... .+...+.+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~---~~~~~~~~~~--- 139 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQS---SEAEALARTW--- 139 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHH---
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCH---HHHHHHHHHh---
Confidence 8888889999999999998732 2223333333333 2577 455689999875421111 1223333333
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.++++++||++| .++++++++|.+.+..
T Consensus 140 --~~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 --KCAFMETSAKLN----------HNVKELFQELLNLEKR 167 (172)
T ss_dssp --TCEEEECBTTTT----------BSHHHHHHHHHHTCCS
T ss_pred --CCeEEEecCCCC----------cCHHHHHHHHHHHHhh
Confidence 368999999998 7899999999886643
No 89
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=1.9e-17 Score=153.74 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|++|+|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 45799999999999999999999853210 11122333344333444444 6788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+..... ..+..++.+..+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 144 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVS---KERGEKLALDYG- 144 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSC---HHHHHHHHHHHT-
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCC---HHHHHHHHHHcC-
Confidence 98888888889999999999987322 2233344444442 566 55568999997531110 113334444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 145 ----~~~~~~Sa~~~----------~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 ----IKFMETSAKAN----------INVENAFFTLARDI 169 (183)
T ss_dssp ----CEEEECCC-------------CCHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999998 68899988887654
No 90
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=6.8e-17 Score=152.84 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=105.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR 71 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS--------------CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc
Confidence 356899999999999999999998532110 001122344443333333345678899999999999
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..... ..+...+.+.++
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 144 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVS---SERGRQLADHLG--- 144 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSC---HHHHHHHHHHHT---
T ss_pred chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHCC---
Confidence 998888999999999999987432 222333344443 2566 55668999997632110 113334444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++++++||++| .++.+++++|.+.
T Consensus 145 --~~~~~~Sa~~~----------~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 145 --FEFFEASAKDN----------INVKQTFERLVDV 168 (203)
T ss_dssp --CEEEECBTTTT----------BSSHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 58999999998 5777777776554
No 91
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=4e-17 Score=151.11 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=93.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---CeEEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpGh 85 (593)
+++.++|+++|+.|+|||||+++|++..... +....++.+.....+..+ ...+.+|||||+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQ----------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCT----------------TC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 5678999999999999999999998642110 001112222222233332 457899999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCCh-hhHHHHHHHHH-------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~-------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~ 157 (593)
++|...+...+..+|++++|+|+++.... .....+..+.. .++|. ++++||+|+.+.+... ...+..++
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~v--~~~~~~~~ 145 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF-VILGNKIDAEESKKIV--SEKSAQEL 145 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCE-EEEEECTTSCGGGCCS--CHHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcE-EEEEECCccccccccC--CHHHHHHH
Confidence 99998888888999999999999874321 22222222222 46674 5568999996432100 01123333
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+.. ...+++++||++| .++++++++|.+.+
T Consensus 146 ~~~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 146 AKSL----GDIPLFLTSAKNA----------INVDTAFEEIARSA 176 (182)
T ss_dssp HHHT----TSCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHhc----CCCeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 3322 2578999999998 68999999887643
No 92
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=2.7e-17 Score=150.56 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=98.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|+.|+|||||+++|++...... .....+.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK--------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS--------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC--------------CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 4679999999999999999999985421100 00111222222223333234467899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+..... ..+..++.+..
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~---- 141 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS---IQEAESYAESV---- 141 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHT----
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccC---HHHHHHHHHHc----
Confidence 888888889999999999987432 222223333322 3566 55568999987531110 11334444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 142 -~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 142 -GAKHYHTSAKQN----------KGIEELFLDLCKRM 167 (170)
T ss_dssp -TCEEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred -CCeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68999999987654
No 93
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=3.6e-17 Score=154.35 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=103.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
...+.++|+++|++|+|||||+++|++..... ...|+......+..++..+.+|||||+++
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-------------------HVPTLHPTSEELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC---
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCc-------------------cCCCCCceeEEEEECCEEEEEEECCCcHh
Confidence 34567899999999999999999997432110 01122222334556678899999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|...+...+..+|++++|+|+++.. +....+.+..+.. .++|. +++.||+|+.+. ... .++.+.+....
T Consensus 82 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~~~-~~~----~~~~~~~~~~~ 155 (198)
T 1f6b_A 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI-LILGNKIDRPEA-ISE----ERLREMFGLYG 155 (198)
T ss_dssp -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE-EEEEECTTSTTC-CCH----HHHHHHHTCTT
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEEECCCcccc-CCH----HHHHHHhCccc
Confidence 8877777888999999999998743 2333333433332 36774 556799999752 111 13334443221
Q ss_pred ---------CC---CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 ---------FP---GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ---------~~---~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+. ...++++++||++| .++++++++|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 156 QTTGKGSVSLKELNARPLEVFMCSVLKR----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp TCCCSSCCCTTTCCSCCEEEEECBTTTT----------BSHHHHHHHHHTTC
T ss_pred ccccccccccccccCceEEEEEEECCCC----------CCHHHHHHHHHHhc
Confidence 11 13578999999998 78999999987643
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=1.2e-16 Score=150.34 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=102.0
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe---eCCeEEEEEecC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE---TKARHYAHVDCP 83 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~~~iiDtp 83 (593)
..+++.++|+++|..|+|||||+++|++.... +...+.+.......+. .....+.+||||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~ 77 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-----------------NETLFLESTNKIYKDDISNSSFVNFQIWDFP 77 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG-----------------GGGGGCCCCCSCEEEEECCTTSCCEEEEECC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC-----------------cceeeeccccceeeeeccCCCeeEEEEEECC
Confidence 45667899999999999999999988742111 1111222222222222 345678999999
Q ss_pred ChhhhHHHH---HHhhhcCCEEEEEEECCCCCChhhHHHH-HHHHH-----cCCCeEEEEEeecCCCCHHHH---HHHHH
Q psy8869 84 GHADYIKNM---ITGAAQMDGAILVCSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKADMVDDEEL---LELVE 151 (593)
Q Consensus 84 Gh~~~~~~~---~~~~~~~d~~ilVvda~~g~~~qt~e~l-~~~~~-----l~ip~iiVvvNK~Dl~~~~~~---~~~~~ 151 (593)
|+++|.... ...+..+|++|+|+|+++.. .+..+++ ..+.. .++| ++++.||+|+.+.+.. ...+.
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~ 155 (196)
T 3llu_A 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY-MEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIH 155 (196)
T ss_dssp SSCCTTCTTCCHHHHHHTCSEEEEEEETTSCC-HHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhcccccccCCEEEEEEECCCch-HHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHH
Confidence 999997766 67788999999999999863 2332322 22222 2666 5556799999875322 12222
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+..+.+.........++++++||++ . ++.++++.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~ 194 (196)
T 3llu_A 156 QRANDDLADAGLEKLHLSFYLTSIYD-H----------SIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHTTCTTSCEEEEEECTTS-T----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCcceEEEEech-h----------hHHHHHHHHHHH
Confidence 22222233322222357899999998 3 688888887654
No 95
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=2.2e-17 Score=150.82 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=102.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|+.|+|||||+++|++...... .....+.+.......+......+.+|||||+++|.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD 68 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--------------SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH
Confidence 3578999999999999999999986421100 00111222222222222224578899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGN 166 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 166 (593)
..+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+.... ...++.++.+..+
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~---- 140 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDLLDDSCI---KNEEAEGLAKRLK---- 140 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGGGGGGCSS---CHHHHHHHHHHHT----
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccCccccc---CHHHHHHHHHHcC----
Confidence 777777889999999999987331 222233333322 36774 556899998753211 0113344444443
Q ss_pred CceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 167 DIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 167 ~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 141 -~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 141 -LRFYRTSVKED----------LNVSEVFKYLAEKH 165 (168)
T ss_dssp -CEEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred -CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 58999999998 67889998887643
No 96
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=6.6e-17 Score=150.48 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=105.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.+|||||+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD----------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 457999999999999999999998542110 1112334344333444444 5788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++....+. ...+..+.. .++| +++++||+|+.+..... ..+..++.+..
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 145 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVT---FLEASRFAQEN-- 145 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHT--
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHc--
Confidence 99999889999999999999987432222 223333332 3566 55568999986431110 11233444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++.+++++|...+
T Consensus 146 ---~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 146 ---ELMFLETSALTG----------ENVEEAFVQCARKI 171 (186)
T ss_dssp ---TCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CCEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68888888876644
No 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.71 E-value=4.2e-17 Score=151.44 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=102.4
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh 85 (593)
...+.++|+++|+.|+|||||+++|++..... .. ...++... ...+..++. .+.+|||||+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------~~----~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD------------DY----DPTIEDSY-LKHTEIDNQWAILDVLDTAGQ 76 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS------------CC----CTTCCEEE-EEEEEETTEEEEEEEEECCSC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCC------------CC----CCCcccee-EEEEEeCCcEEEEEEEECCCc
Confidence 34578999999999999999999998531100 00 00111111 222333443 4567999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHH----HHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA----RQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~----~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
++|...+...+..+|++++|+|+++... ....+.+..+ ...++| +++++||+|+.+..... ..+..++.+.
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~ 152 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVT---RDQGKEMATK 152 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSC---HHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcC---HHHHHHHHHH
Confidence 9998888888889999999999987422 1122222222 224677 45567999987531110 1133444454
Q ss_pred cCCCCCCceEEEeccC-ccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~-~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++ ++++++||+ +| .+++++++.|.+.+
T Consensus 153 ~~-----~~~~~~Sa~~~~----------~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 153 YN-----IPYIETSAKDPP----------LNVDKTFHDLVRVI 180 (183)
T ss_dssp HT-----CCEEEEBCSSSC----------BSHHHHHHHHHHHH
T ss_pred hC-----CeEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 43 579999999 87 68999999887643
No 98
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=7.3e-17 Score=147.10 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|+.|+|||||+++|++..... .. ....+.+. .....+......+.+|||||+++|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------~~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE------------DY--EPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS------------CC--CTTCCEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC------------CC--CCCcceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 57999999999999999999998542100 00 00111111 11122222334788999999999998
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..+. ...+..++++..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~---- 139 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRADQW---- 139 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS---CHHHHHHHHHHH----
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc---CHHHHHHHHHHc----
Confidence 88888999999999999987322 122222222222 2677 4556899998753211 012334444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 140 -~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 140 -NVNYVETSAKTR----------ANVDKVFFDLMREI 165 (168)
T ss_dssp -TCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 358999999998 68999999887643
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=5.4e-17 Score=152.32 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=102.9
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
..++.++|+++|++|+|||||+++|+... ... . ..|+......++..+..+.+|||||+++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~-------~~~--------~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGE-------IVT--------T----IPTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSC-------CEE--------E----EEETTEEEEEEEETTEEEEEEECC----
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCC-------ccc--------c----CCcCceeEEEEEECCEEEEEEECCCCHh
Confidence 34678999999999999999999996421 100 0 1122222334556788999999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|...+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~ 159 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMP-VS----ELTDKLGLQH 159 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGG
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccc
Confidence 98777778889999999999987432 223333333322 2566 555689999976411 11 1222222111
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.....++++++||++| .++++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 160 LRSRTWYVQATCATQG----------TGLYDGLDWLSHELS 190 (192)
T ss_dssp CSSCCEEEEECBTTTT----------BTHHHHHHHHHHHTT
T ss_pred ccCCceEEEECcCCCc----------CCHHHHHHHHHHHHh
Confidence 2223578999999998 689999999887653
No 100
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=153.02 Aligned_cols=163 Identities=16% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh 85 (593)
...+.++|+++|+.|+|||||+++|++...... .. ..+.+.....+..+ ...+.||||||+
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~----------------~~-~t~~~~~~~~~~~~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPES----------------YT-PTVFERYMVNLQVKGKPVHLHIWDTAGQ 92 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-----------------------C-CCCCEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CC-CccceeEEEEEEECCEEEEEEEEECCCc
Confidence 345679999999999999999999985321100 00 01111111122333 346789999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhh-H-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------HH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EI 152 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~~ 152 (593)
++|...+...+..+|++++|+|+++...-+. . ..+..+... ++| +++++||+|+.+.....+.+ ..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp ------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHH
T ss_pred hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHH
Confidence 9998888888889999999999987322111 1 223333332 677 45567999998753322221 12
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+..++.+.++. .+++++||++| .++++++++|.+.+
T Consensus 172 ~~~~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 172 RGQEMARSVGA----VAYLECSARLH----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHHHTTC----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 34455555432 48999999998 68999999887654
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=9.7e-17 Score=153.16 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=97.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC---CeEEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---ARHYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~~~iiDtpGh 85 (593)
+++.++|+++|+.|+|||||+++|++..... . ...++.+... +..+ ...+.+|||||+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~------------~-----~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRD------------T-----QTSITDSSAI--YKVNNNRGNSLTLIDLPGH 64 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCC------------B-----CCCCSCEEEE--EECSSTTCCEEEEEECCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccc------------c-----cCCcceeeEE--EEecCCCccEEEEEECCCC
Confidence 4677999999999999999999998642100 0 0112222222 3343 578999999999
Q ss_pred hhhHH-HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHH---------HcCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 86 ADYIK-NMITGAAQMDGAILVCSAADGPMPQTREHILLAR---------QVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 86 ~~~~~-~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~---------~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
++|.. .+...+..+|++++|+|+++ ...+..+....+. ..++| +++++||+|+.+... .+.+...+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~l~ 141 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKS-AKLIQQQLE 141 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCC-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCccc-HHHHHHHHH
Confidence 99987 45556789999999999986 2122222222111 12466 556689999975421 122223333
Q ss_pred HHHh-------------------hcCCC-----------CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 156 ELLN-------------------KYEFP-----------GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 156 ~~l~-------------------~~~~~-----------~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+.+. ..... ...++++++||++|.+.+. ..++++++++|.+.
T Consensus 142 ~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~----~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 142 KELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTG----SADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccc----ccChHHHHHHHHHh
Confidence 3332 00000 0167899999999732211 14788999988763
No 102
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=5.1e-18 Score=177.22 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=114.7
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe-EEEEEecCChhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR-HYAHVDCPGHAD 87 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~iiDtpGh~~ 87 (593)
....++|+++|++|+|||||+++|++... ...+...|+|++.....++..+. .+.|||||||.+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 45678999999999999999999875321 11233457787777777777655 899999999987
Q ss_pred h-------HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 88 Y-------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 88 ~-------~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
| ...+...+..+|++++|+|+ +...++.+.+..+...++|. ++++||+|+.+.... ...+++.+.
T Consensus 96 ~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~pi-IvV~NK~Dl~~~~~~-----~~~~~l~~~ 167 (423)
T 3qq5_A 96 VGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPF-VVVVNKIDVLGEKAE-----ELKGLYESR 167 (423)
T ss_dssp CCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCE-EEECCCCTTTTCCCT-----HHHHHSSCC
T ss_pred ccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCE-EEEEeCcCCCCccHH-----HHHHHHHHH
Confidence 6 34456677899999999999 77889999999999999995 456899999875321 122222222
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
+ .++++++||++| .+++++++.|.+.++.+
T Consensus 168 ~-----g~~v~~vSAktg----------~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 Y-----EAKVLLVSALQK----------KGFDDIGKTISEILPGD 197 (423)
T ss_dssp T-----TCCCCCCSSCCT----------TSTTTHHHHHHHHSCCC
T ss_pred c-----CCCEEEEECCCC----------CCHHHHHHHHHHhhhhh
Confidence 2 468999999998 67889999999888644
No 103
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.71 E-value=3.8e-17 Score=149.49 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=101.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~ 88 (593)
..++|+++|++|+|||||+++|++.... .+....++.+.....+..+ ...+.+|||||+++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCC----------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 3589999999999999999999853210 0111122222222333333 357889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+..... .+..++.+..+
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 138 (170)
T 1g16_A 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG-- 138 (170)
T ss_dssp SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCH----HHHHHHHHHHT--
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCH----HHHHHHHHHcC--
Confidence 8777778889999999999987432 2223334334332 566 55568999995421111 12334444443
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 139 ---~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 139 ---IPFIESSAKND----------DNVNEIFFTLAKLI 163 (170)
T ss_dssp ---CCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ---CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 68999999887654
No 104
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=6.4e-17 Score=151.88 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=106.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~ 86 (593)
++..++|+++|+.|+|||||+++|++...... + . ...+... ...+..++ ..+.+|||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~------~---~-----~t~~~~~---~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEE------Y---V-----PTVFDHY---AVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCS------C---C-----CSSCCCE---EEEEESSSCEEEEEEECCCCSS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCC------C---C-----Cccccee---EEEEEECCEEEEEEEEECCCCc
Confidence 34678999999999999999999986421000 0 0 0001111 11233333 567899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCC-hhhH-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------HHH
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPM-PQTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIE 153 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~ 153 (593)
+|...+...+..+|++++|+|+++... .... ..+..+... ++|. +++.||+|+.+.....+.+ ..+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhcccccchhhcccccCcccCHHH
Confidence 998888888889999999999987432 2222 234444444 7774 5567999998643221111 123
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 154 ~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..++.+.++. .+++++||++| .++++++++|.+.+
T Consensus 157 ~~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 191 (194)
T 2atx_A 157 GQKLAKEIGA----CCYVECSALTQ----------KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHTC----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----cEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 4455555443 47999999998 68999999887654
No 105
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=3e-17 Score=155.66 Aligned_cols=159 Identities=17% Similarity=0.102 Sum_probs=103.1
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~ 86 (593)
.++.++|+++|+.|+|||||+++|++..... .....++.+.....+..+ ...+.||||||++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5678999999999999999999998642110 001122333333333333 4578899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHH-------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQ-------VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~-------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
+|...+...+..+|++++|+|+++....+ ....+..+.. .++|. ++++||+|+.+.+...+ +...+.
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~----~~~~~~ 143 (207)
T 1vg8_A 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF-VVLGNKIDLENRQVATK----RAQAWC 143 (207)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCE-EEEEECTTSSCCCSCHH----HHHHHH
T ss_pred HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcE-EEEEECCCCcccccCHH----HHHHHH
Confidence 99887777888999999999998743222 2222222221 36674 55679999975321111 223333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
... ..++++++||++| .++++++++|.+.+
T Consensus 144 ~~~----~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 144 YSK----NNIPYFETSAKEA----------INVEQAFQTIARNA 173 (207)
T ss_dssp HHT----TSCCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred Hhc----CCceEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 321 2578999999998 68888888886654
No 106
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.71 E-value=1.2e-17 Score=163.79 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=105.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHHH-
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKN- 91 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~- 91 (593)
.+|+++|++|+|||||+++|++.....+ ...|+|.+.....+..++..+.||||||+.++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~----------------~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG----------------NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE----------------ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc----------------CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 4799999999999999999986421111 12367777777778888889999999998776431
Q ss_pred ---------HHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 92 ---------MITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 92 ---------~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
....+ ..+|++++|+|+++ ..........+..+++|.+ +++||+|+.+.... ......+.+.
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl~~~~~~----~~~~~~l~~~ 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDIAEHRGI----SIDTEKLESL 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHHHHHTTC----EECHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhcCCcCCc----HHHHHHHHHH
Confidence 22223 68999999999987 2233334455556788854 56899997643211 0112223333
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+ .+|++++||++| .|+++|+++|.+.
T Consensus 139 l-----g~~vi~~SA~~g----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 139 L-----GCSVIPIQAHKN----------IGIPALQQSLLHC 164 (256)
T ss_dssp H-----CSCEEECBGGGT----------BSHHHHHHHHHTC
T ss_pred c-----CCCEEEEECCCC----------CCHHHHHHHHHhh
Confidence 3 368999999998 7899999999875
No 107
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.9e-17 Score=159.31 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=103.2
Q ss_pred CCcccccCC-CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEE
Q psy8869 1 MAKSKFERT-KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHY 77 (593)
Q Consensus 1 ~~~~~~~~~-k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~ 77 (593)
|+...+.+. ...++|+++|+.|+|||||+++|++..... ......|.+.... .+..++ ..+
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~--~~~~~~~~~~~ 64 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGVEFATR--TLEIEGKRIKA 64 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEEE--EEEETTEEEEE
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEE--EEEECCEEEEE
Confidence 555555333 567899999999999999999998642110 0111222223222 333444 578
Q ss_pred EEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHH
Q psy8869 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIE 153 (593)
Q Consensus 78 ~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~ 153 (593)
.||||||+++|...+...+..+|++|+|+|+++... ....+.+..+... ++| ++|++||+|+.+..... ..+
T Consensus 65 ~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~ 140 (223)
T 3cpj_B 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVP---TEE 140 (223)
T ss_dssp EEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSC---HHH
T ss_pred EEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccC---HHH
Confidence 899999999998878888889999999999987432 2222333444433 566 55568999987531110 112
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 154 ~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
...+.+.. .++++++||++| .++++++++|...+..
T Consensus 141 ~~~~~~~~-----~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 141 SKTFAQEN-----QLLFTETSALNS----------ENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHT-----TCEEEECCCC-C----------CCHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-----CCEEEEEeCCCC----------CCHHHHHHHHHHHHHH
Confidence 33444443 368999999998 6899999998876543
No 108
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=4.5e-17 Score=148.54 Aligned_cols=157 Identities=22% Similarity=0.164 Sum_probs=87.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|++|+|||||+++|++..... .....|.+.. ....+......+.+|||||+++|..
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~ 64 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGP---------------EAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRW 64 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC-------
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccC---------------CCCccccceE-EEEEECCEEEEEEEEECCCCccchh
Confidence 35899999999999999999996431110 0111233332 1223333445678999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|+++... ......+..+.. .++|. +++.||+|+.+...... .+...+....
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~---~~~~~~~~~~---- 136 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI-ILVGNKSDLVRSREVSV---DEGRACAVVF---- 136 (166)
T ss_dssp --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE-EEEEECTTCCSSCCSCH---HHHHHHHHHT----
T ss_pred hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccccccccccCH---HHHHHHHHHh----
Confidence 88888899999999999987321 222233333333 26775 45679999975421111 1223333333
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 137 -~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 137 -DCKFIETSAALH----------HNVQALFEGVVRQI 162 (166)
T ss_dssp -TCEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred -CCcEEEeccCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68999999887643
No 109
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.2e-16 Score=151.88 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=105.8
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (593)
.+....++|+++|+.|+|||||+++|++..... ......+.+.. ..+..++ ..+.||||||
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G 82 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPE--------------VYVPTVFENYV---ADIEVDGKQVELALWDTAG 82 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEETTEEEEEEEEECTT
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCC--------------cCCCcccceEE---EEEEECCEEEEEEEEECCC
Confidence 344567899999999999999999998632110 00001111111 1123333 4678999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCC-hhh-HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHH---------
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVE--------- 151 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt-~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~--------- 151 (593)
+++|...+...+..+|++++|+|+++... ... ...+..+... ++|. ++++||+|+.+.....+.+.
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 161 (207)
T 2fv8_A 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPI-ILVANKKDLRSDEHVRTELARMKQEPVRT 161 (207)
T ss_dssp CTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGGGCHHHHHHHHHTTCCCCCH
T ss_pred cHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhhhccccchhhhhhcccCCCCH
Confidence 99998877778889999999999987321 112 2333444443 7784 55689999976533222211
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+...+...++ ..+++++||++| .++++++++|.+.+.
T Consensus 162 ~~~~~~~~~~~----~~~~~~~SA~~g----------~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 162 DDGRAMAVRIQ----AYDYLECSAKTK----------EGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHHTT----CSEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 12233333333 238999999998 689999999877643
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=1.8e-16 Score=153.05 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=103.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh----
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH---- 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh---- 85 (593)
...++|+++|.+|+|||||+++|++..... ....+.|.+.....++.++..+.||||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV----------------QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEE----------------ECC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 356899999999999999999998532110 001233444444455667788999999998
Q ss_pred --hhh---HHHHHHhhhcCCEEEEEEECCCCCChh---hHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 86 --ADY---IKNMITGAAQMDGAILVCSAADGPMPQ---TREHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 86 --~~~---~~~~~~~~~~~d~~ilVvda~~g~~~q---t~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
++. ...+...+..+|++++|+|+++....+ ..+.+..+... ++| +++++||+|+.+...........+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~ 169 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIK 169 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHH
Confidence 442 122233356789999999998854322 23344444444 677 4556899999865322222223445
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++.+..+ ..++++++||++| .++++++++|...+
T Consensus 170 ~~~~~~~---~~~~~~~~SA~~g----------~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 170 QILDNVK---NPIKFSSFSTLTG----------VGVEQAKITACELL 203 (228)
T ss_dssp HHHHHCC---SCEEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEEecccC----------CCHHHHHHHHHHHH
Confidence 5555433 1378999999998 68999998887654
No 111
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=8.9e-17 Score=150.27 Aligned_cols=164 Identities=14% Similarity=0.162 Sum_probs=100.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|+.|+|||||+++|++...... .....+.+.......+......+.||||||+++|
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--------------TEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--------------CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCCcceEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 45679999999999999999999986321100 0111122232322333222357889999999999
Q ss_pred H-HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 89 I-KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 89 ~-~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
. ..+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+..+.. ..+...+.+..
T Consensus 83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~- 157 (189)
T 1z06_A 83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVP---TDLAQKFADTH- 157 (189)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT-
T ss_pred hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeC---HHHHHHHHHHc-
Confidence 8 666677889999999999987322 122222332222 3567 55568999996531110 11233444443
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++|.+. .++.+++++|.+.+
T Consensus 158 ----~~~~~~~Sa~~~~~~-------~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 ----SMPLFETSAKNPNDN-------DHVEAIFMTLAHKL 186 (189)
T ss_dssp ----TCCEEECCSSSGGGG-------SCHHHHHHHHC---
T ss_pred ----CCEEEEEeCCcCCcc-------cCHHHHHHHHHHHH
Confidence 357999999986221 47889999887654
No 112
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=9.5e-17 Score=149.64 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=98.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
++.++|+++|++|+|||||+++|++...... ..+.+.+.....+..++ ..+.||||||+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDE-----------------YDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCC-----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 4679999999999999999999985321000 00111111122233333 3467899999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|...+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+..... .+...+.+..+
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~~~~~~~----~~~~~~~~~~~ 139 (189)
T 4dsu_A 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM-VLVGNKCDLPSRTVDT----KQAQDLARSYG 139 (189)
T ss_dssp -CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTSSSCSSCH----HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccCcccccCH----HHHHHHHHHcC
Confidence 98888888889999999999987322 122222222322 26774 5567999997542111 12333444433
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 140 -----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 -----IPFIETSAKTR----------QGVDDAFYTLVREI 164 (189)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 68899888887654
No 113
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.2e-16 Score=148.58 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=104.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+.++|+++|+.|+|||||+++|++....... ....+.+.. ....+......+.||||||+++|
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--------------IPTIEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--------------SCCCCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--------------cCcccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 456799999999999999999999863211000 001111111 11222223456889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.+... .+...+...+
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~- 143 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDT----REAQAVAQEW- 143 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCH----HHHHHHHHHH-
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCH----HHHHHHHHHh-
Confidence 9888888899999999999987321 222223322322 2567 45568999997632111 1223333433
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.++++++||++| .++++++++|.+.+..
T Consensus 144 ----~~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 144 ----KCAFMETSAKMN----------YNVKELFQELLTLETR 171 (199)
T ss_dssp ----TCEEEECBTTTT----------BSHHHHHHHHHHHCSS
T ss_pred ----CCeEEEEecCCC----------CCHHHHHHHHHHHHhh
Confidence 357999999998 6899999999887643
No 114
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=3.6e-17 Score=151.29 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=102.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
.+...++|+++|+.|+|||||+++|++..... . .....+.... ..+..++ ..+.||||||+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------~--~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~ 67 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVS------------D--YDPTIEDSYT---KICSVDGIPARLDILDTAGQ 67 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCS------------S--CCTTCCEEEE---EEEEETTEEEEEEEEECCCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcc------------c--cCCCcCceEE---EEEEECCEEEEEEEEECCCc
Confidence 34567999999999999999999998641100 0 0001111111 2233343 46789999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHH-H---HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~-~---~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
++|...+...+..+|++++|+|+++... ......+..+ . ..++|. ++++||+|+.+..... ..+...+...
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~~~~~~~~~ 143 (181)
T 2fn4_A 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKADLESQRQVP---RSEASAFGAS 143 (181)
T ss_dssp TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGGGGGGCCSC---HHHHHHHHHH
T ss_pred hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccccccccC---HHHHHHHHHH
Confidence 9997777777889999999999987321 2222222222 2 236774 5568999987532110 1122333333
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
. .++++++||++| .++++++++|.+.+
T Consensus 144 ~-----~~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 144 H-----HVAYFEASAKLR----------LNVDEAFEQLVRAV 170 (181)
T ss_dssp T-----TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred c-----CCeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 3 468999999998 68899998887654
No 115
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=1.1e-16 Score=152.79 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=103.0
Q ss_pred cccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEec
Q psy8869 5 KFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDC 82 (593)
Q Consensus 5 ~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDt 82 (593)
++..+.+.++|+++|..++|||||+.+++.... ..+....+..+.....+..+ ...+.||||
T Consensus 6 ~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f----------------~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDt 69 (216)
T 4dkx_A 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSF----------------DNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 69 (216)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHSCC----------------C----------CEEEEEECSSCEEEEEEECC
T ss_pred CCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCC----------------CCCcCCccceEEEEEEEEecceEEEEEEEEC
Confidence 455566779999999999999999999985311 11111122222222233333 446679999
Q ss_pred CChhhhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 83 PGHADYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 83 pGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
+|+++|.......++.+|++++|.|.++.. +......+..+.. -++| +++|.||+|+.+.... -..+..++.
T Consensus 70 aGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V---~~~e~~~~a 145 (216)
T 4dkx_A 70 AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKA 145 (216)
T ss_dssp SCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHH
T ss_pred CCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc---cHHHHhhHH
Confidence 999999988888899999999999998722 2233333333332 3566 5556799998754111 012334455
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+.++ ++++.+||++| .+++++++.|.+.++
T Consensus 146 ~~~~-----~~~~e~SAktg----------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 146 KELN-----VMFIETSAKAG----------YNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHT-----CEEEEEBTTTT----------BSHHHHHHHHHHHC-
T ss_pred HHhC-----CeeEEEeCCCC----------cCHHHHHHHHHHHHH
Confidence 5543 67999999998 789999999987765
No 116
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=1.2e-16 Score=150.96 Aligned_cols=164 Identities=18% Similarity=0.120 Sum_probs=105.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
++...++|+++|+.|+|||||+++|++........ ...+.+.. ....+......+.||||||+++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 85 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--------------PTVFENYI-ADIEVDGKQVELALWDTAGQED 85 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC--------------CSSCCCCE-EEEEETTEEEEEEEECCCCSGG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccC--------------CcccceEE-EEEEECCEEEEEEEEECCCchh
Confidence 34567899999999999999999998642110000 00011111 1122222234688999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhh-HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------HHHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEI 154 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt-~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~ 154 (593)
|...+...+..+|++++|+|+++... ... ...+..+... ++|. ++++||+|+.+.....+.+ ..+.
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (201)
T 2gco_A 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEG 164 (201)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGTTCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecHHhhcCccchhhhcccccCcCCHHHH
Confidence 98888788889999999999987322 111 2333444444 7785 5567999998753322221 1233
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++.+.++. .+++++||++| .++++++++|.+.
T Consensus 165 ~~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~i~~~ 197 (201)
T 2gco_A 165 RDMANRISA----FGYLECSAKTK----------EGVREVFEMATRA 197 (201)
T ss_dssp HHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHHhCCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 445554432 48999999998 6899999988654
No 117
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=153.48 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=100.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.||||||+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 467999999999999999999998542111 0111122222222333344 6788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCCh-hhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++.... .....+..+.. .++| +++++||+|+.+..... ..+...+.+..
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~-- 160 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVT---FLEASRFAQEN-- 160 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHT--
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccC---HHHHHHHHHHc--
Confidence 877777778899999999999874322 22233333333 2566 55568999986431110 11233344443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 161 ---~~~~~~~SA~~g----------~gi~~l~~~l~~~i 186 (200)
T 2o52_A 161 ---ELMFLETSALTG----------ENVEEAFLKCARTI 186 (200)
T ss_dssp ---TCEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68888888876544
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=3.3e-17 Score=152.08 Aligned_cols=158 Identities=20% Similarity=0.123 Sum_probs=103.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|+.|+|||||+++|++..... ...|+......+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-------------------TKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-------------------ECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc-------------------cCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 678999999999999999999997432100 0111112223345567889999999999988
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+... . .++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-A----SEVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-H----HHHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCC-H----HHHHHHhCccccc
Confidence 878888889999999999987532 333444443332 3566 556789999976411 1 1233333322222
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...++++++||++| .++++++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKG----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGT----------BTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCC----------cCHHHHHHHHHHHH
Confidence 23568999999998 68999999987654
No 119
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.69 E-value=1.2e-16 Score=148.48 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=102.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
.+.+.++|+++|+.|+|||||+++|++..... .. ....+.+. ...+..++ ..+.||||||+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~--~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVE------------DY--EPTKADSY---RKKVVLDGEEVQIDILDTAGQ 76 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCC------------SC--CTTCCEEE---EEEEEETTEEEEEEEEECCCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCC------------cC--CCccceEE---EEEEEECCEEEEEEEEECCCC
Confidence 34577999999999999999999998532100 00 00111111 12223333 46889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
++|...+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+.... ...++.++++.
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~---~~~~~~~~~~~ 152 (187)
T 2a9k_A 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDLEDKRQV---SVEEAKNRAEQ 152 (187)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE-EEEEECGGGGGGCCS---CHHHHHHHHHH
T ss_pred cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccccCcc---CHHHHHHHHHH
Confidence 9999888888999999999999987322 122222222222 26774 556899998753111 01234444544
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
. .++++++||++| .++++++++|.+.+
T Consensus 153 ~-----~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 153 W-----NVNYVETSAKTR----------ANVDKVFFDLMREI 179 (187)
T ss_dssp T-----TCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred c-----CCeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 3 368999999998 68999999887654
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.69 E-value=6.9e-17 Score=158.68 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=108.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|++|+|||||+++|++.....+ ...|+|++.....+...+..+.||||||+.+|.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~----------------~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVA----------------NWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEE----------------ECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCccc----------------CCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 4678999999999999999999986422111 123778777777777888899999999987664
Q ss_pred H-----HH-HHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 90 K-----NM-ITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 90 ~-----~~-~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
. .+ ...+ ..+|++++|+|+++. ......+..+..+++|.+ +++||+|+.+... +..+...+.+.+
T Consensus 67 ~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvi-lv~NK~Dl~~~~~----i~~~~~~l~~~l 139 (258)
T 3a1s_A 67 YSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVI-LAMTAIDEAKKTG----MKIDRYELQKHL 139 (258)
T ss_dssp SSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEE-EEEECHHHHHHTT----CCBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEE-EEEECcCCCCccc----hHHHHHHHHHHc
Confidence 2 11 1122 479999999999873 223334455666788954 5689999754311 111233344444
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+ +|++++||++| .|+++|++.+.+..
T Consensus 140 g-----~~vi~~SA~~g----------~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 140 G-----IPVVFTSSVTG----------EGLEELKEKIVEYA 165 (258)
T ss_dssp C-----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C-----CCEEEEEeeCC----------cCHHHHHHHHHHHh
Confidence 3 68999999998 78999999987754
No 121
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=149.57 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=103.7
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
.+.+.++|+++|+.|+|||||+++|++..... . .....+.+. ...+..++ ..+.||||||+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~--~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~ 72 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVE------------D--YEPTKADSY---RKKVVLDGEEVQIDILDTAGQ 72 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT------------T--CCTTCCEEE---EEEEEETTEEEEEEEEECCCT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCC------------C--CCCccceEE---EEEEEECCEEEEEEEEcCCCh
Confidence 45577999999999999999999998542100 0 000111111 12233343 47889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
++|...+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+.... ...++.++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~---~~~~~~~~~~~ 148 (206)
T 2bov_A 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDLEDKRQV---SVEEAKNRAEQ 148 (206)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTCGGGCCS---CHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccCccccccc---cHHHHHHHHHH
Confidence 9999988888899999999999987322 122223333332 26774 556899999754211 01233444444
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+ ++++++||++| .++++++++|...+
T Consensus 149 ~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 175 (206)
T 2bov_A 149 WN-----VNYVETSAKTR----------ANVDKVFFDLMREI 175 (206)
T ss_dssp HT-----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred hC-----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 33 57999999998 68889988886654
No 122
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.69 E-value=3.4e-17 Score=151.83 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
.+.++|+++|+.|+|||||+++|++..... . .....+.+. ...+..++ ..+.+|||||+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~------------~--~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD------------S--YDPTIENTF---TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS------------C--CCTTCCEEE---EEEEEETTEEEEEEEEECCCCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC------------C--CCCCccccE---EEEEEECCEEEEEEEEeCCCchh
Confidence 467999999999999999999998432100 0 001112222 22233344 5678999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHH-H---HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~-~---~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
|...+...+..+|++++|+|+++... ......+..+ . ..++|. ++++||+|+.+.... ...+..++.+.+
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~---~~~~~~~~~~~~- 141 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVI---SYEEGKALAESW- 141 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE-EEEEECTTCTTTCCS---CHHHHHHHHHHT-
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccchhccee---cHHHHHHHHHHh-
Confidence 97666677789999999999987321 1111122222 2 236774 456799998653211 112344455544
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++.++++.|.+.+.
T Consensus 142 ----~~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 142 ----NAAFLESSAKEN----------QTAVDVFRRIILEAE 168 (181)
T ss_dssp ----TCEEEECCTTSH----------HHHHHHHHHHHHHHH
T ss_pred ----CCcEEEEecCCC----------CCHHHHHHHHHHHHH
Confidence 358999999998 688999988877553
No 123
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=150.03 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=106.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+.++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 357899999999999999999998642110 011122344444444444445678899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCCh-hhHHHHHHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMP-QTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~-qt~e~l~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++.... .....+..+... ++| +++++||+|+.+.+... .+..++++..
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~--- 150 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDR----NEGLKFARKH--- 150 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCH----HHHHHHHHHT---
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCH----HHHHHHHHHc---
Confidence 8888888999999999999874322 222233333332 455 55568999996431111 1233444443
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++++++++|.+.+.
T Consensus 151 --~~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 151 --SMLFIEASAKTC----------DGVQCAFEELVEKII 177 (195)
T ss_dssp --TCEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred --CCEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 367999999998 689999999877654
No 124
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1e-16 Score=146.67 Aligned_cols=158 Identities=20% Similarity=0.147 Sum_probs=92.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH-
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK- 90 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~- 90 (593)
.++|+++|++|+|||||+++|++...... .+...+.........+......+.+|||||+++|..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA--------------HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEETTEEEEEEEECCCCC------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc--------------ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh
Confidence 57999999999999999999974321110 001111111222222322345677999999999876
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.....+..+|++++|+|+++... ....+.+..+... ++|.+ ++.||+|+.+.... ...+...+.+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~---~~~~~~~~~~~~---- 139 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSREV---SLEEGRHLAGTL---- 139 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCGGGCCS---CHHHHHHHHHHT----
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE-EEeeCcchhhcccC---CHHHHHHHHHHc----
Confidence 33444678999999999987321 2222333333332 67754 56799998743211 111334444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .+++++++.|.+.+
T Consensus 140 -~~~~~~~Sa~~~----------~~v~~l~~~l~~~i 165 (169)
T 3q85_A 140 -SCKHIETSAALH----------HNTRELFEGAVRQI 165 (169)
T ss_dssp -TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred -CCcEEEecCccC----------CCHHHHHHHHHHHH
Confidence 358999999998 68999999887643
No 125
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=155.17 Aligned_cols=161 Identities=19% Similarity=0.131 Sum_probs=101.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+.++|+++|..|+|||||+++|++....... ....+.+. .....+......+.||||||+++|
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--------------DPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--------------CCCSEEEE-EEEEC----CEEEEEEEECCCCTT
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--------------CCccceEE-EEEEEECCEEEEEEEEECCCccch
Confidence 357899999999999999999999864211000 00111111 222333445677899999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+...... .+...+.+..
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~~---~~~~~~~~~~-- 159 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSPEREVQA---VEGKKLAESW-- 159 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTTCGGGCCSCH---HHHHHHHHHH--
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccCccccccCH---HHHHHHHHHh--
Confidence 8878888889999999999987322 122222233322 26774 55679999875421111 1223344443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++++++++|.+.+.
T Consensus 160 ---~~~~~~~Sa~~~----------~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 160 ---GATFMESSAREN----------QLTQGIFTKVIQEIA 186 (201)
T ss_dssp ---TCEEEECCTTCH----------HHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 358999999998 688898888876553
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.69 E-value=3.5e-17 Score=162.39 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=107.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|++|+|||||+++|++.....+ ...|+|++.....+...+..+.+|||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----------------NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----------------ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 458999999999999999999986432111 1236677777777788888999999999877643
Q ss_pred ------HHHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcC-CCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 91 ------NMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVG-VPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 91 ------~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~-ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
.....+ ..+|++++|+|++++ .+....+..+...+ +|. ++++||+|+.+.... ......+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~~~----~~~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNI-ILVLNKFDLLKKKGA----KIDIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSE-EEEEECHHHHHHHTC----CCCHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCE-EEEEEChhcCccccc----HHHHHHHHHHc
Confidence 122222 579999999999874 34444455566677 784 556899997643111 01122333333
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+|++++||++| .++.++++.+...+
T Consensus 139 -----g~~~~~~Sa~~g----------~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 -----GVPVIPTNAKKG----------EGVEELKRMIALMA 164 (271)
T ss_dssp -----SSCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred -----CCcEEEEEeCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 68899999887754
No 127
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=2.3e-16 Score=143.31 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=101.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
+.++|+++|+.|+|||||+++|++...... .. ...+.. ......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------------~~--~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE------------CD--PTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSC------------CC--TTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccc------------cC--CccceE-EEEEEEECCEEEEEEEEECCCchhhhH
Confidence 358999999999999999999985421100 00 000111 111122222334578999999999988
Q ss_pred HHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc----CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 91 NMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV----GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l----~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
.+...+..+|++++|+|+++... ....+.+..+... ++|. ++++||+|+.+.+.. ..+..++.+..+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~Dl~~~~~~----~~~~~~~~~~~~--- 138 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKSDLAARTVE----SRQAQDLARSYG--- 138 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCSCCCSC----HHHHHHHHHHHT---
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEchhhhhcccC----HHHHHHHHHHcC---
Confidence 88888889999999999986322 2223333333332 6775 456899998763211 123344444443
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++.+++++|.+.+
T Consensus 139 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 139 --IPYIETSAKTR----------QGVEDAFYTLVREI 163 (166)
T ss_dssp --CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred --CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 68999999887654
No 128
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=2e-17 Score=158.96 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=109.7
Q ss_pred ccccCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecC
Q psy8869 4 SKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCP 83 (593)
Q Consensus 4 ~~~~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtp 83 (593)
+........++|+++|+.|+|||||+++|+...... ......|.+.......+......+.|||||
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 72 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK--------------KYVATLGVEVHPLVFHTNRGPIKFNVWDTA 72 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTC--------------EEETTTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCC
Confidence 334456678999999999999999999965432111 011123556655555555556778999999
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
|+++|...+...+..+|++++|+|+++....+. ...+..+... ++|. ++++||+|+.+.... .+...+.+.
T Consensus 73 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~-----~~~~~~~~~ 146 (221)
T 3gj0_A 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDIKDRKVK-----AKSIVFHRK 146 (221)
T ss_dssp SGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTTSSSCSSC-----GGGCCHHHH
T ss_pred ChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCcccccccc-----HHHHHHHHH
Confidence 999998777778889999999999998432222 2233333332 6774 556799999764211 011222232
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
. .++++++||++| .++.+++++|.+.+
T Consensus 147 ~-----~~~~~~~Sa~~~----------~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 147 K-----NLQYYDISAKSN----------YNFEKPFLWLARKL 173 (221)
T ss_dssp H-----TCEEEECBGGGT----------BTTTHHHHHHHHHH
T ss_pred c-----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 2 368999999998 57788888877654
No 129
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=6.6e-17 Score=153.36 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=103.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|+.|+|||||+++|++..... +....++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 457899999999999999999998642110 0111222222222333343 4788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+..... ..+...+.+..
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 143 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVE---YDVAKEFADAN-- 143 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHT--
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHc--
Confidence 98888888899999999999987432 2222233333332 455 55568999997642110 11233344443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 144 ---~~~~~~~Sa~~g----------~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 144 ---KMPFLETSALDS----------TNVEDAFLTMARQI 169 (206)
T ss_dssp ---TCCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 357999999998 68888888876543
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.69 E-value=6.5e-17 Score=149.91 Aligned_cols=164 Identities=19% Similarity=0.131 Sum_probs=99.1
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
+..++|+++|+.|+|||||+++|+....... .....+... .....+......+.+|||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~--------------~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD--------------YVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 5679999999999999999999985321000 000000000 0011122233456699999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCChhh-H-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHH-------HHHHHHHHHH
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLE-------LVEIEIRELL 158 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~~qt-~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~-------~~~~~~~~~l 158 (593)
..+...+..+|++++|+|+++...-+. . ..+..+... ++|. ++++||+|+.+...... ....+..++.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 888888889999999999987332111 1 233333332 6774 55679999876432100 0112344455
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+.++. .+++++||++| .++++++++|.+.+.
T Consensus 150 ~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGA----PAYIECSSKSQ----------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHS
T ss_pred HHcCC----CEEEEEECCCC----------CCHHHHHHHHHHHHh
Confidence 54442 48999999998 789999999877543
No 131
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=3e-17 Score=153.47 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=106.1
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|++|+|||||+++|+... ...+ ..|+......++.++..+.+|||||+++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~-------~~~~------------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD-------VVTT------------VPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC-------CEEE------------CSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC-------CCCc------------CCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 578999999999999999999986321 1000 011112223345568889999999999987
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+.+.... + ++.+.+......
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 154 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAASE-A----EIAEQLGVSSIM 154 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCCH-H----HHHHHhChhhcc
Confidence 777777889999999999987532 333333433333 2566 5556899999764211 1 222222211122
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
...++++++||++| .++++++++|.+.++
T Consensus 155 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 155 NRTWTIVKSSSKTG----------DGLVEGMDWLVERLR 183 (189)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCc----------cCHHHHHHHHHHHHH
Confidence 23568999999998 689999999877653
No 132
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.69 E-value=3.5e-16 Score=149.59 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee--eeEEeeC----------CeEE
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA--HIEYETK----------ARHY 77 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~----------~~~~ 77 (593)
...++|+++|+.|+|||||+++|++.... .+....++.+.. ...+... ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC----------------cCCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 45689999999999999999999853110 000111222222 2222222 4678
Q ss_pred EEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHH
Q psy8869 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEI 152 (593)
Q Consensus 78 ~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~ 152 (593)
.||||||+++|...+...+..+|++|+|+|+++....+. ...+..+.. .++| +++++||+|+.+..... ..
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~ 162 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN---ER 162 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC---HH
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC---HH
Confidence 999999999999988888999999999999987322111 112221211 2455 56678999997531110 12
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+..++.+..+ ++++++||++| .++++++++|.+.+
T Consensus 163 ~~~~~~~~~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 163 QARELADKYG-----IPYFETSAATG----------QNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHHTT-----CCEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-----CcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 3444555443 57999999998 68888888876543
No 133
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=9.4e-17 Score=152.95 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=102.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~ 87 (593)
...++|+++|++|+|||||+++|++..... +....++.+.....+..++ ..+.||||||+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC----------------SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999998532100 1111223233333344454 5788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+..... .+..++.+.++
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~- 155 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG- 155 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCH----HHHHHHHHHHT-
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCH----HHHHHHHHHcC-
Confidence 98777778889999999999987432 2223344444433 566 55568999995421111 12333444443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|...+
T Consensus 156 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 ----IPFIESSAKND----------DNVNEIFFTLAKLI 180 (213)
T ss_dssp ----CCEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 67788888776544
No 134
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=99.68 E-value=1e-16 Score=129.47 Aligned_cols=84 Identities=29% Similarity=0.470 Sum_probs=73.8
Q ss_pred cccceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhhhh
Q psy8869 416 NNKKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWHLV 495 (593)
Q Consensus 416 ~~~~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i 495 (593)
-++++||+++|++|+|+++++.|+++....+++ .+++++|.. |||||||++++.++.|+.+
T Consensus 7 v~d~~WYvv~~~sG~E~~V~~~L~~~~~~~~l~--i~~v~vP~~-----------------fPGYVfVe~~~~~~~~~~I 67 (92)
T 3lpe_A 7 VGAHMIFAVRTMVGQEKNIAGLMASRAEKEQLD--VYSILASES-----------------LKGYVLVEAETKGDVEELI 67 (92)
T ss_dssp --CCCEEEEEECTTCHHHHHHHHHHHHHHTTCC--EEEEEECTT-----------------STTEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEEEECChHHHHHHHHHHHHHhcCCc--EEEEEEecc-----------------cCCEEEEEEecchhHHHHH
Confidence 345789999999999999999999998887764 667777764 9999999999999999999
Q ss_pred hccCCeeEeccCCCCCceecCHHHHHHHH
Q psy8869 496 KNTKKVTGFIGGKSNRPTPISSKEIEEIL 524 (593)
Q Consensus 496 ~~~~~v~~~l~~~~~~p~~i~~~~~~~l~ 524 (593)
++++||.+|++. |++++|++.|.
T Consensus 68 ~~t~gV~gfvg~------pl~~~Ev~~il 90 (92)
T 3lpe_A 68 KGMPRVRGIVPG------TIAIEEIEPLL 90 (92)
T ss_dssp TTCTTEEEECSS------CCCHHHHHHHH
T ss_pred HCCCCceEeCCC------CCCHHHHHHHh
Confidence 999999999974 99999999875
No 135
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.68 E-value=6.8e-17 Score=151.72 Aligned_cols=163 Identities=16% Similarity=0.079 Sum_probs=103.9
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (593)
...++.++|+++|+.|+|||||+++|++...... ....+..... ..+..++ ..+.+|||||
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----------------~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G 80 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----------------YVPTVFENFS-HVMKYKNEEFILHLWDTAG 80 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------CCCCSEEEEE-EEEEETTEEEEEEEEEECC
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----------------cCCeeeeeeE-EEEEECCEEEEEEEEECCC
Confidence 3456779999999999999999999986421000 0001111111 1233333 4568999999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhh--HHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQT--REHILLARQV--GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt--~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
+++|...+...+..+|++++|+|+++...-.. ...+..+... ++| ++++.||+|+.+.... +....+..++.+.
T Consensus 81 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 158 (194)
T 3reg_A 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-DVTKQEGDDLCQK 158 (194)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT-CCCHHHHHHHHHH
T ss_pred cHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC-cccHHHHHHHHHh
Confidence 99998888888899999999999987422111 2233333333 566 5556899998753100 0111234455555
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++. .+++++||++| .++++++++|.+.+
T Consensus 159 ~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 186 (194)
T 3reg_A 159 LGC----VAYIEASSVAK----------IGLNEVFEKSVDCI 186 (194)
T ss_dssp HTC----SCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred cCC----CEEEEeecCCC----------CCHHHHHHHHHHHH
Confidence 543 23999999998 68999999887754
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.68 E-value=9.9e-17 Score=152.86 Aligned_cols=166 Identities=18% Similarity=0.127 Sum_probs=105.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+.++|+++|+.|+|||||+++|+....... + ....+.... ....+......+.||||||+++|
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~------~--------~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTD------Y--------IPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSS------C--------CCSSCCCEE-EEEECSSCEEEEEEECCCCCCCC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCcc------C--------CCccceeEE-EEEEECCEEEEEEEEECCCcHHH
Confidence 35779999999999999999999985421100 0 000111111 11122223357889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCCh-hhH-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHH-----HHHHHHHHHh
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMP-QTR-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL-----VEIEIRELLN 159 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~-qt~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~-----~~~~~~~~l~ 159 (593)
...+...+..+|++++|+|+++...- ... ..+..+... ++|. ++++||+|+.+....... ...+..++.+
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 88887888899999999999873221 111 233344443 6774 556799998764221000 1223445555
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
.++. .+++++||++| .++++++++|.+.+..
T Consensus 150 ~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 150 QIGA----AAYIECSSKTQ----------QNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHHC
T ss_pred HcCC----ceEEEccCCCC----------CCHHHHHHHHHHHHhh
Confidence 5442 58999999998 6899999988776543
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=4.3e-16 Score=165.23 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=108.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD------ 87 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~------ 87 (593)
+|+++|.+|+|||||+++|++..... .+...|+|.+.....+++++..+.+|||||.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~---------------v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 67 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAI---------------VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII 67 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce---------------ecCCCCCccceeeEEEEECCeEEEEEECCCccccccchH
Confidence 79999999999999999998642111 122447888877777888899999999999653
Q ss_pred ---hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHH-HHHHhhcCC
Q psy8869 88 ---YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEI-RELLNKYEF 163 (593)
Q Consensus 88 ---~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~-~~~l~~~~~ 163 (593)
+...+..++..+|++++|+|++++......+....+...++|.++ ++||+|+.+. . ..+. .++. .+++
T Consensus 68 ~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~il-v~NK~D~~~~--~----~~~~~~~~~-~lg~ 139 (439)
T 1mky_A 68 SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTIL-VANKAENLRE--F----EREVKPELY-SLGF 139 (439)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEE-EEESCCSHHH--H----HHHTHHHHG-GGSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEE-EEeCCCCccc--c----HHHHHHHHH-hcCC
Confidence 345566678899999999999998877766666667777888554 6799997532 1 1122 3333 3443
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+++++||++| .++.+|++.+...++
T Consensus 140 ----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 140 ----GEPIPVSAEHN----------INLDTMLETIIKKLE 165 (439)
T ss_dssp ----CSCEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCC----------CCHHHHHHHHHHhcc
Confidence 25799999998 789999999987765
No 138
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=2.9e-17 Score=157.31 Aligned_cols=163 Identities=18% Similarity=0.102 Sum_probs=99.5
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCCh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGH 85 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh 85 (593)
......++|+++|+.|+|||||+++|++..... ......+.+............ ..+.+|||||+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 71 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEK--------------NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTC--------------EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeeEEEEEEeCCCcEEEEEEEecCCc
Confidence 445678999999999999999999987432110 000111222222111111111 56889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhhH-HHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQTR-EHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~-e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
++|...+...+..+|++++|+|++++...+.. +.+..+.. .++|. ++++||+|+.+..... ......+.+..
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 147 (218)
T 4djt_A 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI-VVCANKIDIKNRQKIS---KKLVMEVLKGK 147 (218)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCE-EEEEECTTCC----CC---HHHHHHHTTTC
T ss_pred hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCCccccccC---HHHHHHHHHHc
Confidence 99987777778899999999999985432222 22233332 35774 5567999998642211 12233443332
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .++++++++|.+.+
T Consensus 148 -----~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 148 -----NYEYFEISAKTA----------HNFGLPFLHLARIF 173 (218)
T ss_dssp -----CCEEEEEBTTTT----------BTTTHHHHHHHHHH
T ss_pred -----CCcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 468999999998 57778888776654
No 139
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.67 E-value=2.9e-16 Score=143.46 Aligned_cols=154 Identities=20% Similarity=0.243 Sum_probs=99.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH-
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI- 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~- 89 (593)
+.++|+++|++|+|||||+++|++..... +...++|.+.....+..++..+.+|||||+.+|.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYI----------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSC----------------C-----CCCCCEEEEEETTEEEEEEECCCCSCSSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeec----------------cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCC
Confidence 35899999999999999999998531100 0112444444444455667889999999988763
Q ss_pred -----HHHHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 90 -----KNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 90 -----~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
......+ ..+|++++|+|+++ ..+....+..+...++|.+ ++.||+|+.+.... ..+..++.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~----~~~~~~~~~~~~ 138 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLL-LALNKMDLAKSLGI----EIDVDKLEKILG 138 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEE-EEEECHHHHHHTTC----CCCHHHHHHHHT
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEE-EEEEchHhccccCh----hhHHHHHHHHhC
Confidence 1122223 37999999999986 2223334445555688854 56799997532110 001223333333
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++++||++| .++++++++|.+.+
T Consensus 139 -----~~~~~~SA~~~----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 -----VKVVPLSAAKK----------MGIEELKKAISIAV 163 (165)
T ss_dssp -----SCEEECBGGGT----------BSHHHHHHHHHHHT
T ss_pred -----CCEEEEEcCCC----------CCHHHHHHHHHHHh
Confidence 57999999998 78999999987654
No 140
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=4.3e-16 Score=145.61 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=92.8
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
...+.++|+++|+.|+|||||+++|++..... .. . +.+.......+..++ ..+.||||||+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------------~~----~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD------------EY----D-PTIEDSYRKQVVIDGETCLLDILDTAGQ 79 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCS------------CC----C-TTCCEEEEEEEEETTEEEEEEEEECCC-
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCcc------------cc----C-CccceEEEEEEEECCEEEEEEEEECCCh
Confidence 34567999999999999999999998532100 00 0 111111112233333 45889999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
++|...+...+..+|++++|+|+++... ......+..+.. .++|. ++++||+|+.+.+.. ..++.++.+.
T Consensus 80 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl~~~~~~----~~~~~~~~~~ 154 (190)
T 3con_A 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM-VLVGNKCDLPTRTVD----TKQAHELAKS 154 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCSCCCSC----HHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECCcCCcccCC----HHHHHHHHHH
Confidence 9998888888899999999999987432 222223333332 26774 556899998763111 1233444444
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.+ ++++++||++| .++.+++++|.+.+
T Consensus 155 ~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 181 (190)
T 3con_A 155 YG-----IPFIETSAKTR----------QGVEDAFYTLVREI 181 (190)
T ss_dssp HT-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred cC-----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 43 57999999998 68899998887654
No 141
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.67 E-value=1.7e-15 Score=152.76 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=107.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEee-CCeEEEEEecCChhhhH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET-KARHYAHVDCPGHADYI 89 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~~~iiDtpGh~~~~ 89 (593)
..++|+++|.+|+|||||+++|++.... ......+.|++.....+.. ++..+.+|||||+++|.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM 66 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh
Confidence 4589999999999999999999853110 1111335566655555553 56789999999999994
Q ss_pred HH-----HHHhhhcCCEEEEEEECCCCCChhhHHH----HHHHHHc--CCCeEEEEEeecCCCCHHHH---HHHHHHHHH
Q psy8869 90 KN-----MITGAAQMDGAILVCSAADGPMPQTREH----ILLARQV--GVPYIVVFLNKADMVDDEEL---LELVEIEIR 155 (593)
Q Consensus 90 ~~-----~~~~~~~~d~~ilVvda~~g~~~qt~e~----l~~~~~l--~ip~iiVvvNK~Dl~~~~~~---~~~~~~~~~ 155 (593)
.. ....+..+|++++|+|+++....+..+. +..+... ++| +++++||+|+.+.+.+ .+....++.
T Consensus 67 ~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~ 145 (307)
T 3r7w_A 67 ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLS 145 (307)
T ss_dssp HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHH
Confidence 43 3344568999999999998543333222 2222221 677 5556899999984322 224446777
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++.+.++++ .++++++||++. ++.+++..+...
T Consensus 146 ~~~~~~g~~--~~~~~~tSa~~~-----------~i~e~~~~iv~~ 178 (307)
T 3r7w_A 146 ETSSEFGFP--NLIGFPTSIWDE-----------SLYKAWSQIVCS 178 (307)
T ss_dssp HHHHTTTCC--SCEEEECCTTSS-----------HHHHHHHHHHHT
T ss_pred HHHHHcCCC--CeEEEEeeecCC-----------hHHHHHHHHHHH
Confidence 788777653 589999999983 555666555443
No 142
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.66 E-value=2.3e-16 Score=145.30 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=100.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh--
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY-- 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~-- 88 (593)
+..+|+++|.+|+|||||+++|++..... . ....+.|.+.....+..++..+.+|||||+.++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~----------~-----~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI----------V-----TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC----------C-----CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce----------e-----eCCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 55899999999999999999998531100 0 001244444444455667778999999997542
Q ss_pred ------HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 89 ------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 89 ------~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
.......+..+|++++|+|+++....+..+.+..+... ++|. ++++||+|+.+... ++.+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~~----------~~~~ 136 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI-TVVRNKADITGETL----------GMSE 136 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCE-EEEEECHHHHCCCC----------EEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCE-EEEEECccCCcchh----------hhhh
Confidence 11233457799999999999886544334444333332 5775 55679999754210 0000
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
. ...+++++||++| .++++++++|.+.+.
T Consensus 137 ~-----~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 137 V-----NGHALIRLSARTG----------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp E-----TTEEEEECCTTTC----------TTHHHHHHHHHHHC-
T ss_pred c-----cCCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 0 2468999999998 789999999988764
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.66 E-value=1.7e-16 Score=168.24 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=104.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA------ 86 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~------ 86 (593)
.+|+++|++|+|||||+++|++.... ..+...|+|.+......++.+..+.+|||||++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~---------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS---------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---------------eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 68999999999999999999753110 112245788887777777888899999999985
Q ss_pred --hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 87 --DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 87 --~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
++...+..++..+|++|+|+|++++......+....+...++|.+ +++||+|+.+... +..++. .+++
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~~~~~~-------~~~~~~-~lg~- 138 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTEMRA-------NIYDFY-SLGF- 138 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC------------CCCSSG-GGSS-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCccchh-------hHHHHH-HcCC-
Confidence 666777778889999999999999988887777777777788855 5679999875421 111122 2232
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.+++++||++| .|+.+|++++...++
T Consensus 139 ---~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 139 ---GEPYPISGTHG----------LGLGDLLDAVAEHFK 164 (436)
T ss_dssp ---CCCEECBTTTT----------BTHHHHHHHHHHTGG
T ss_pred ---CCeEEEeCcCC----------CChHHHHHHHHHhcC
Confidence 26899999998 789999999988775
No 144
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.66 E-value=1.1e-16 Score=151.68 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC----CeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK----ARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----~~~~~iiDtpGh 85 (593)
+..++|+++|+.|+|||||+++|++..... ..+....+..+.....+..+ ...+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKF--------------LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcc--------------cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 456899999999999999999998541100 00001111122233334444 457899999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH------cCCCeEEEEEeecCCCC-HHHHHHHHHHHHHHH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ------VGVPYIVVFLNKADMVD-DEELLELVEIEIREL 157 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~-~~~~~~~~~~~~~~~ 157 (593)
++|...+...+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+ .... ...++.++
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v---~~~~~~~~ 159 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV---RLDMAQDW 159 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC---CHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC---CHHHHHHH
Confidence 9999988888899999999999987432 233344444443 3566 555689999976 2111 01234455
Q ss_pred HhhcCCCCCCceEEEeccCc-cccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 158 LNKYEFPGNDIPIIKGSAKL-ALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~-g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++.++ ++++++||++ | .++.+++++|.+.
T Consensus 160 ~~~~~-----~~~~~~Sa~~~~----------~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 160 ATTNT-----LDFFDVSANPPG----------KDADAPFLSIATT 189 (208)
T ss_dssp HHHTT-----CEEEECCC-----------------CHHHHHHHHH
T ss_pred HHHcC-----CEEEEeccCCCC----------cCHHHHHHHHHHH
Confidence 55543 6899999999 8 5677777777654
No 145
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=4.2e-16 Score=165.56 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=93.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..++|+++|++|+|||||+++|++.... ......|+|.+.....+..++..+.||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a---------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA---------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 4578999999999999999999854211 1112346777777677778899999999999877642
Q ss_pred H--------HHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHHc-CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 91 N--------MITGAAQMDGAILVCSAADGPMPQ-TREHILLARQV-GVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 91 ~--------~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~l-~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
. +...+..+|++++|+|++++...+ ..+...++..+ ++| +|+++||+|+.+.... +. .++.+.
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~-~~--~~l~~~--- 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADA-LI--RAIADG--- 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHH-HH--HHHHHH---
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccch-hH--HHHHhc---
Confidence 2 344567899999999999876542 22333333433 455 5667899999875332 11 122221
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+ ..+++++||++| .|+++|+++|.+.+.
T Consensus 370 -~----~~~~i~vSAktg----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 -T----GTEVIGISALNG----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp -H----TSCEEECBTTTT----------BSHHHHHHHHTHHHH
T ss_pred -C----CCceEEEEECCC----------CCHHHHHHHHHHHHh
Confidence 1 157999999998 789999999988765
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=161.16 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=103.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
++.++|+++|++|+|||||+++|++.. .. . ...|+......++..+..+.||||||+++|.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~-------~~-----~-------~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV-----T-------TIPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSC-------CE-----E-------EEEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCC-------CC-----C-------cccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 456799999999999999999986421 00 0 0113333445566788899999999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHH-HHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLA-RQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~-~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
..+...+..+|++|+|+|+++... ....+.+..+ ... ++| +++|+||+|+.+.... + ++...+......
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~-~----~i~~~~~~~~~~ 297 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 297 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccCH-H----HHHHHhchhhhh
Confidence 888888899999999999986332 2333333222 222 566 5556899999864211 1 222222222222
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
...++++++||++| .++++|++.|.+.+.
T Consensus 298 ~~~~~~~~vSAk~g----------~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 HRNWYIQATCATSG----------DGLYEGLDWLSNQLR 326 (329)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCC----------cCHHHHHHHHHHHHH
Confidence 34679999999998 789999999887653
No 147
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.65 E-value=6.2e-16 Score=143.86 Aligned_cols=163 Identities=14% Similarity=0.075 Sum_probs=101.5
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
++..++|+++|+.|+|||||+++|++...... + ....+... .....+......+.||||||+++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~------~--------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN------Y--------VPTVFENY-TASFEIDTQRIELSLWDTSGSPYY 68 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS------C--------CCCSEEEE-EEEEECSSCEEEEEEEEECCSGGG
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCC------C--------CCccceeE-EEEEEECCEEEEEEEEECCCChhh
Confidence 45779999999999999999999986421000 0 00001111 111222333457889999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhh--HHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHH---------HHHHH
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEIR 155 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt--~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~~ 155 (593)
...+...+..+|++++|+|+++...-+. ...+..+.. .++| ++++.||+|+.+.......+ ..+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 8777777889999999999987322111 112233333 2566 55668999997532211111 12344
Q ss_pred HHHhhcCCCCCCceEEEeccC-ccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~-~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
++.+.++ ..+++++||+ ++ .+++++++.+.+.
T Consensus 148 ~~~~~~~----~~~~~e~Sa~~~~----------~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 148 NMAKQIG----AATYIECSALQSE----------NSVRDIFHVATLA 180 (184)
T ss_dssp HHHHHHT----CSEEEECBTTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHHcC----CcEEEEeeecCCC----------cCHHHHHHHHHHH
Confidence 5555544 3689999999 56 5789999887654
No 148
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.65 E-value=3.2e-16 Score=154.47 Aligned_cols=166 Identities=11% Similarity=0.140 Sum_probs=107.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+.++|+++|++|+|||||+++|++....... ....++|.+.....+..++..+.||||||+.++
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESK--------------LGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC--------------TTSCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccC--------------CCCCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence 346789999999999999999999853211000 001124555544556678889999999998664
Q ss_pred -----------HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc-----CCCeEEEEEe-ecCCCCHHHHHHHHH
Q psy8869 89 -----------IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV-----GVPYIVVFLN-KADMVDDEELLELVE 151 (593)
Q Consensus 89 -----------~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l-----~ip~iiVvvN-K~Dl~~~~~~~~~~~ 151 (593)
...+...+..+|++++|+|++. ...+....+..+... +.|.++| +| |+|+.+. ...+.+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~v-v~nK~Dl~~~-~~~~~i~ 161 (260)
T 2xtp_A 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVL-FTHKEDLNGG-SLMDYMH 161 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEE-EECGGGGTTC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEE-EEcccccCCc-cHHHHHH
Confidence 2333346678999999999985 556666666666554 5676655 56 9999853 2212111
Q ss_pred ----HHHHHHHhhcCCCCCCceE--EEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 152 ----IEIRELLNKYEFPGNDIPI--IKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 152 ----~~~~~~l~~~~~~~~~~~v--i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++..+++.++.. ..++ +++||++| .++.++++.|...++
T Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGR--ICAFNNRAEGSNQD----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp HCCCHHHHHHHHHTTTC--EEECCTTCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhCCe--EEEecCcccccccH----------HHHHHHHHHHHHHHH
Confidence 2344455554421 0012 78999997 688999998877654
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.65 E-value=1.1e-15 Score=162.20 Aligned_cols=162 Identities=24% Similarity=0.241 Sum_probs=107.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|++|+|||||+++|++...... ....|+|.+.....+..++..+.+|||||..++.
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v---------------~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALV---------------SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE---------------CCCC------CCEEEEETTEEEEESSCSCC----
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccccc---------------CCCCCCcCCceEEEEEECCEEEEEEECCCCcccc
Confidence 3568999999999999999999986421110 1123566666666677788899999999975543
Q ss_pred HH------------HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHH-HHHHHHHHHHH
Q psy8869 90 KN------------MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLELVEIEIRE 156 (593)
Q Consensus 90 ~~------------~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~-~~~~~~~~~~~ 156 (593)
.. ....+..+|.+++|+|++++...+.......+...+.|.+ +++||+|+.+... ..+.+..++..
T Consensus 243 ~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~ 321 (439)
T 1mky_A 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV-VVFNKWDLVVHREKRYDEFTKLFRE 321 (439)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSTTGGGCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCCCchhhHHHHHHHHHHH
Confidence 22 2345678999999999999887777666666777888855 5679999986422 12333334443
Q ss_pred HHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 157 LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 157 ~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+.... ..|++++||++| .++.+|++.+...
T Consensus 322 ~~~~~~----~~~~~~~SA~~g----------~gv~~l~~~i~~~ 352 (439)
T 1mky_A 322 KLYFID----YSPLIFTSADKG----------WNIDRMIDAMNLA 352 (439)
T ss_dssp HCGGGT----TSCEEECBTTTT----------BSHHHHHHHHHHH
T ss_pred HhccCC----CCcEEEEECCCC----------CCHHHHHHHHHHH
Confidence 333322 468999999998 6777877777654
No 150
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=144.47 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=100.5
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh 85 (593)
...+.++|+++|+.|+|||||+++|++..... +.. ..+.+.....+..++ ..+.+|||||+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 78 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT----------------EYI-PTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCC-CcccceeEEEEEECCEEEEEEEEECCCC
Confidence 34577999999999999999999998542110 000 111111112233444 35669999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhh-H-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHH---------HHH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLEL---------VEI 152 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~---------~~~ 152 (593)
++|...+...+..+|++++|+|+++...-+. . ..+..+... ++|. +++.||+|+.+.....+. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI-ILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCE-EEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 9998777777889999999999987322221 1 223333332 6775 556799999753211111 112
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+...+.+.++. .+++++||++| .++++++++|...+
T Consensus 158 ~~~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 158 AAKLLAEEIKA----ASYIECSALTQ----------KNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC----cEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 33444444432 48999999998 68999999887654
No 151
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=7e-16 Score=143.82 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=106.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+.++|+++|+.|+|||||+++|++.... .+...++|.+.....+..++..+.+|||||+.+|.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc----------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence 36689999999999999999999853110 01122556555555667778899999999988773
Q ss_pred ------HHHHHhh--hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 90 ------KNMITGA--AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 90 ------~~~~~~~--~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
......+ ..+|++++|+|+++ .......+..+...++|.+ ++.||+|+.+.... ..+..++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~----~~~~~~~~~~~ 141 (188)
T 2wjg_A 69 ANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLL-LALNKMDLAKSLGI----EIDVDKLEKIL 141 (188)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEE-EEEECHHHHHHTTC----CCCHHHHHHHH
T ss_pred cccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEE-EEEEhhhccccccc----hHHHHHHHHHh
Confidence 1122223 35899999999975 3344445555666788855 46799997543111 01223333333
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+ ++++++||++| .++.++++++.+.+..
T Consensus 142 ~-----~~~~~~Sa~~~----------~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 142 G-----VKVVPLSAAKK----------MGIEELKKAISIAVKD 169 (188)
T ss_dssp T-----SCEEECBGGGT----------BSHHHHHHHHHHHHTT
T ss_pred C-----CCeEEEEecCC----------CCHHHHHHHHHHHHHh
Confidence 3 57999999997 6899999998876654
No 152
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=144.60 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=98.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
....++|+++|..|+|||||+++|++..... ......+.+.......+......+.+|||||++++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 85 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCG--------------GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCc--------------cCCCCcccceEEEEEEECCEEEEEEEEecCCCccc
Confidence 3467899999999999999999986321100 00011122222222222222345678999999887
Q ss_pred HH-HHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 89 IK-NMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 89 ~~-~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
.. .....+..+|++++|+|+++.. +....+.+..+.. .++|. +++.||+|+.+..... ..+...+.+..
T Consensus 86 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~~~~~~a~~~- 160 (195)
T 3cbq_A 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLARSREVS---LEEGRHLAGTL- 160 (195)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCTTTCCSC---HHHHHHHHHHT-
T ss_pred hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEeechhccccCCcC---HHHHHHHHHHh-
Confidence 64 3344567899999999998732 1222333333333 36774 4567999997531110 11233344443
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .+++++++.|.+.+.
T Consensus 161 ----~~~~~e~Sa~~~----------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 161 ----SCKHIETSAALH----------HNTRELFEGAVRQIR 187 (195)
T ss_dssp ----TCEEEEEBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CCEEEEEcCCCC----------CCHHHHHHHHHHHHH
Confidence 357999999998 689999998877654
No 153
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.64 E-value=3.7e-16 Score=154.33 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=101.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH--
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI-- 89 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~-- 89 (593)
.++|+++|++|+|||||+++|++..... . ...|+|++.....+.. +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v-----------~-----~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV-----------G-----NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC-----------C-----SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-----------c-----CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 4799999999999999999998542110 0 0126666555555555 6779999999988774
Q ss_pred ----HHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 90 ----KNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 90 ----~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
......+. .+|++++|+|+++. ......+..+...++|.+ +++||+|+..... +..+...+.+.++
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~----~~~~~~~l~~~lg- 137 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVT-IALNMIDVLDGQG----KKINVDKLSYHLG- 137 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEE-EEEECHHHHHHTT----CCCCHHHHHHHHT-
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEE-EEEEChhhCCcCC----cHHHHHHHHHHcC-
Confidence 12222233 69999999999862 222333344556789954 5689999754311 0012233333333
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+|++++||++| .|+++|++++...+.
T Consensus 138 ----~~vi~~SA~~g----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ----VPVVATSALKQ----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----SCEEECBTTTT----------BSHHHHHHHHHHSCT
T ss_pred ----CCEEEEEccCC----------CCHHHHHHHHHHHHh
Confidence 68999999998 789999999987653
No 154
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=6.6e-16 Score=147.53 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=103.7
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe-eeeEEeeCCeEEEEEecCChhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
....++|+++|..|+|||||+++|++...... ....+.... ....+......+.||||||+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPET----------------YVPTVFENYTACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------CCCCSEEEEEEEEEC--CEEEEEEEEECCSGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCC----------------cCCeeeeeEEEEEEECCEEEEEEEEECCCCHh
Confidence 34679999999999999999999986421100 000111111 1222333446788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChh--hHHHHHHHHHc--CCCeEEEEEeecCCCCHHHHHH---------HHHHHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQ--TREHILLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEIEI 154 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~q--t~e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~---------~~~~~~ 154 (593)
|...+...+..+|++|+|+|+++...-. ....+..+... ++| ++++.||+|+.+...... ....+.
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 9888888888999999999998743222 12333444443 666 455679999975311000 011234
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCc-HHHHHHHhhhhCC
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQS-ILSLSKALDTYIP 203 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~-~~~ll~~l~~~l~ 203 (593)
..+.+.++. .+++++||++| .+ ++++++.|...+.
T Consensus 167 ~~~~~~~~~----~~~~e~SA~~g----------~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 167 CAIAKQLGA----EIYLEGSAFTS----------EKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHHHTC----SEEEECCTTTC----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CEEEEeccCCC----------cccHHHHHHHHHHHHh
Confidence 455555442 38999999998 56 8999998877543
No 155
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.63 E-value=9.2e-16 Score=142.85 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=98.3
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCC
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPG 84 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpG 84 (593)
..+.+.++|+++|..|+|||||+++|+...... .. . ..+... ...+..++ ..+.||||||
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~------------~~--~-~t~~~~---~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ------------EE--S-PEGGRF---KKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC------------CC--C-TTCEEE---EEEEEETTEEEEEEEEECSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC------------Cc--C-CCcceE---EEEEEECCEEEEEEEEECCC
Confidence 445678999999999999999999998642110 00 0 001111 12333444 4567899999
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+++|. .+..+|++++|+|+++...-+. ...+..+.. .++|. +++.||+|+.+.... .....+..++.+
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~~-~v~~~~~~~~~~ 149 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM-VLVGTQDAISAANPR-VIDDSRARKLST 149 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE-EEEEECTTCBTTBCC-CSCHHHHHHHHH
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccccccc-ccCHHHHHHHHH
Confidence 99887 5668999999999987432222 333333433 35674 456799998521000 000123444555
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++ .++++++||++| .++++++++|.+.
T Consensus 150 ~~~----~~~~~e~Sa~~~----------~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 150 DLK----RCTYYETCATYG----------LNVERVFQDVAQK 177 (184)
T ss_dssp HTT----TCEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred HcC----CCeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 543 368999999998 6899999888664
No 156
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.3e-15 Score=143.30 Aligned_cols=159 Identities=15% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
+++.++|+++|+.|+|||||+++|++...... .....+... .....+......+.||||||+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--------------YDPTLESTY-RHQATIDDEVVSMEILDTAGQED- 88 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcc--------------cCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-
Confidence 35679999999999999999999986421100 000111111 11122333345688999999988
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++++|+|+++.. .....+.+..+.. .++|. +++.||+|+.+..... ..+..++.+..
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v~---~~~~~~~~~~~-- 162 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL-ILVGNKADLDHSRQVS---TEEGEKLATEL-- 162 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE-EEEEECGGGGGGCCSC---HHHHHHHHHHH--
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE-EEEEECcccccccccC---HHHHHHHHHHh--
Confidence 555566678999999999998732 1222223333322 46774 4567999987531110 11233344433
Q ss_pred CCCCceEEEeccCccccCCCCCCCcC-cHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQ-SILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~-~~~~ll~~l~~~l 202 (593)
.++++++||++| . ++++++++|.+.+
T Consensus 163 ---~~~~~~~Sa~~g----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 163 ---ACAFYECSACTG----------EGNITEIFYELCREV 189 (196)
T ss_dssp ---TSEEEECCTTTC----------TTCHHHHHHHHHHHH
T ss_pred ---CCeEEEECCCcC----------CcCHHHHHHHHHHHH
Confidence 368999999998 6 8899998887643
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=143.84 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=96.3
Q ss_pred cCCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 7 ~~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
..+...++|+++|..|+|||||+++|++..... .. ....+.+. .....+......+.||||||++
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~------------~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFIS------------EY--DPNLEDTY-SSEETVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCS------------CC--CTTCCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCc------------cc--CCCcccee-eEEEEECCEEEEEEEEECCCCC
Confidence 345677999999999999999999998642100 00 00112111 1112222234567799999998
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+|.. +...+..+|++++|+|+++.. +......+..+.. .++|. +++.||+|+.+.... ...+..++.+
T Consensus 81 ~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl~~~~~v---~~~~~~~~~~ 155 (187)
T 3c5c_A 81 TPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA-LLLGNKLDMAQYRQV---TKAEGVALAG 155 (187)
T ss_dssp -CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECGGGGGGCSS---CHHHHHHHHH
T ss_pred cchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE-EEEEECcchhhcCcc---CHHHHHHHHH
Confidence 8854 245677899999999998732 1222333333333 36774 556799998643111 0123344444
Q ss_pred hcCCCCCCceEEEecc-CccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 160 KYEFPGNDIPIIKGSA-KLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa-~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++ ++++++|| ++| .+++++++.|.+.+
T Consensus 156 ~~~-----~~~~e~Sa~~~g----------~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 156 RFG-----CLFFEVSACLDF----------EHVQHVFHEAVREA 184 (187)
T ss_dssp HHT-----CEEEECCSSSCS----------HHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEeecCcc----------ccHHHHHHHHHHHH
Confidence 443 58999999 787 68999999887643
No 158
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=2.3e-15 Score=140.39 Aligned_cols=154 Identities=27% Similarity=0.339 Sum_probs=99.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC--------
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG-------- 84 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG-------- 84 (593)
++|+++|++|+|||||+++|++.... .+...|+|.+.....+ . .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEEEec--C--CEEEEECCCccccccCC
Confidence 68999999999999999999853211 0111234433333322 2 688999999
Q ss_pred ---hhhhHHHHHHh----hhcCCEEEEEEECCCC-----------CChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHH
Q psy8869 85 ---HADYIKNMITG----AAQMDGAILVCSAADG-----------PMPQTREHILLARQVGVPYIVVFLNKADMVDDEEL 146 (593)
Q Consensus 85 ---h~~~~~~~~~~----~~~~d~~ilVvda~~g-----------~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~ 146 (593)
+++|...+... +..+++++.|+|+... ...++.+.+..+...++|.+ +++||+|+.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTI-VAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEE-EEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceE-EEeehHhccCcH--
Confidence 67776555444 4456788888887541 12233444555566788854 567999998753
Q ss_pred HHHHHHHHHHHHhhcCCCC--CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 147 LELVEIEIRELLNKYEFPG--NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~--~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
..+.+++.+.++.+. +..+++++||++| .++++++++|.+.+.
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 139 ----QEVINFLAEKFEVPLSEIDKVFIPISAKFG----------DNIERLKNRIFEVIR 183 (190)
T ss_dssp ----HHHHHHHHHHHTCCGGGHHHHEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhhhhhccCCcEEEEecCCC----------CCHHHHHHHHHHhcc
Confidence 123344445554421 1246899999998 689999999877553
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=2.1e-15 Score=149.75 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=94.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChh-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHA- 86 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~- 86 (593)
...++|+++|++|+|||||+|+|+......... .........+++++.....+..++ ..+++|||||+.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY--------PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCC--------CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 356899999999999999999997431111000 000011123344444444444444 378999999972
Q ss_pred --------------------hhHHHHHHh------hhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 87 --------------------DYIKNMITG------AAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 87 --------------------~~~~~~~~~------~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
.|+...... -..+|++++++++.. +......+.+..+.. ++|. |+|+||+|
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pv-i~V~nK~D 155 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNI-IPLIAKAD 155 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCE-EEEESSGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCE-EEEEeccC
Confidence 222211110 013679999997665 777788777777766 7885 45689999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 140 MVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+.+.++. +..+..+.+.+... .++++++||.++ .++.+++++|.+.+|
T Consensus 156 ~~~~~e~-~~~~~~i~~~l~~~-----~i~v~~~sa~~~----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 156 TLTPEEC-QQFKKQIMKEIQEH-----KIKIYEFPETDD----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp GSCHHHH-HHHHHHHHHHHHHT-----TCCCCCC---------------------CHHHHHTCS
T ss_pred CCCHHHH-HHHHHHHHHHHHHc-----CCeEEcCCCCCC----------hhHHHHHHHHhcCCC
Confidence 9876433 33444566655543 456888999987 678888898887654
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.62 E-value=2.2e-15 Score=142.89 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=101.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe-eeeEEeeCCeEEEEEecCChhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT-AHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
.+..++|+++|..|+|||||+++|++..... +....+.... ....++.....+.||||||+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE----------------NYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCCccceeEEEEEEECCEEEEEEEEeCCCcHh
Confidence 4567999999999999999999998642110 0000111111 1122233345788999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChh-h-HHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHH---------HHHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQ-T-REHILLARQ--VGVPYIVVFLNKADMVDDEELLELV---------EIEI 154 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~q-t-~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~ 154 (593)
|.......+..+|++++|+|+++...-. . ...+..+.. .++| ++++.||+|+.+.......+ ..+.
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHH
Confidence 9877777788999999999998732211 1 122233333 2556 55668999997532211111 1234
Q ss_pred HHHHhhcCCCCCCceEEEeccC-ccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAK-LALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~-~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++.+.++ ..+++++||+ +| .+++++++.+.+.
T Consensus 168 ~~~~~~~~----~~~~~e~SAk~~~----------~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 168 ANMAKQIG----AATYIECSALQSE----------NSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHHT----CSEEEECCTTTCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHcC----CCEEEEeeeccCC----------cCHHHHHHHHHHH
Confidence 45555543 2689999999 55 5788998887653
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.61 E-value=2.1e-15 Score=140.30 Aligned_cols=167 Identities=15% Similarity=0.165 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEe-----eCCeEEEEEecCChh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE-----TKARHYAHVDCPGHA 86 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~~~iiDtpGh~ 86 (593)
.++|+++|.+|+|||||+++|++..... ..+....+..+.....+. .....+.+|||||++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~--------------~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSD--------------LGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCcc--------------CCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 4799999999999999999998531000 000011122222222221 135578899999999
Q ss_pred hhHHHHHHhhhcCCEEEEEEECCCCC--ChhhHHHHHHHHH--cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 87 DYIKNMITGAAQMDGAILVCSAADGP--MPQTREHILLARQ--VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 87 ~~~~~~~~~~~~~d~~ilVvda~~g~--~~qt~e~l~~~~~--l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+|.......++.+|++++|+|.+++. .......+..+.. .++| ++++.||+|+.+.....+........+.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 98876666677899999999998752 2223333333333 2566 55567999998753322112222233333333
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++ ...+++++||++|. .++.+|++.|.+.++
T Consensus 147 ~~-~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 147 FP-AIRDYHFVNATEES---------DALAKLRKTIINESL 177 (184)
T ss_dssp SC-EEEEEEECCTTSCC---------HHHHHHHHHHHHHHH
T ss_pred Cc-chhheEEEecccCc---------hhHHHHHHHHHHHHh
Confidence 21 11249999999971 278899988876654
No 162
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.61 E-value=1.8e-17 Score=156.39 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=97.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|+.|+|||||+++|++.. .........+.+.......+......+.||||||+++|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 96 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT--------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 96 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC--------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 457999999999999999999986321 011112222333333333332223578899999999998
Q ss_pred HHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHHc---CCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q psy8869 90 KNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQV---GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPG 165 (593)
Q Consensus 90 ~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~l---~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (593)
..+...+..+|++++|+|+++... ......+..+... ++| +++++||+|+.+..... ..+...+.+.+
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~---- 168 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVD---YTTAKEFADSL---- 168 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCC---SCC-CHHHHTT----
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCC---HHHHHHHHHHc----
Confidence 777778889999999999988433 2223333334433 566 45567999997542100 01223333333
Q ss_pred CCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 166 NDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 166 ~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++++++||++| .++++++++|.+.+.
T Consensus 169 -~~~~~~vSA~~g----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 -GIPFLETSAKNA----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp -TCCBCCCCC-------------HHHHHHHHHHTTTTT
T ss_pred -CCeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 367999999998 689999999887653
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.61 E-value=1.5e-15 Score=161.85 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=109.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG------ 84 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG------ 84 (593)
...+|+++|++|+|||||+++|++.... ..+...|+|.+......+..+..+.+|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~---------------~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS---------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTCSSCCEEECCCC------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc---------------ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch
Confidence 3468999999999999999999753110 1112347888877777778888999999999
Q ss_pred --hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 85 --HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 85 --h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
++++...+..++..+|++|+|+|+.++......+.+..+...++|.++ ++||+|+.+... ...++. .++
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvil-V~NK~D~~~~~~-------~~~e~~-~lg 157 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVL-AVNKLDNTEMRA-------NIYDFY-SLG 157 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEE-EEECC----------------CCSG-GGS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEE-EEECccchhhhh-------hHHHHH-HcC
Confidence 888888888889999999999999999988888888888888888554 679999875311 111111 223
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+ -+.+++||++| .++.+|++.+...++
T Consensus 158 ~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 158 F----GEPYPISGTHG----------LGLGDLLDAVAEHFK 184 (456)
T ss_dssp S----SSEEECCTTTC----------TTHHHHHHHHHTTGG
T ss_pred C----CceEEeecccc----------cchHHHHHHHHhhcc
Confidence 2 24679999998 689999999987665
No 164
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.61 E-value=3.4e-15 Score=145.70 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=106.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh---
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH--- 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh--- 85 (593)
..+.++|+++|++|+|||||+++|++....... ....+.|.......+..++..+.||||||.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSR--------------LGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCcccc--------------CCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 457899999999999999999999864211100 012245555555667778899999999996
Q ss_pred -----hhhHHHHHHhh----hcCCEEEEEEECCCCCChhhHHHHHHHHHc------CCCeEEEEEeecCCCCH--HHHHH
Q psy8869 86 -----ADYIKNMITGA----AQMDGAILVCSAADGPMPQTREHILLARQV------GVPYIVVFLNKADMVDD--EELLE 148 (593)
Q Consensus 86 -----~~~~~~~~~~~----~~~d~~ilVvda~~g~~~qt~e~l~~~~~l------~ip~iiVvvNK~Dl~~~--~~~~~ 148 (593)
+++...+...+ ..+|++|+|+|++. ........+..+... +.| +|++.||+|+.+. ++..+
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~~l~ 161 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGGSLHDYVS 161 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCCCHHHHHh
Confidence 55655555554 79999999999985 555555555555553 566 5556899999763 22211
Q ss_pred HH-HHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 149 LV-EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 149 ~~-~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.. ...++.+++.++. ++++.++...... .+.++.+|++.+...++
T Consensus 162 ~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~-----~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 162 NTENRALRELVAECGG-----RVCAFDNRATGRE-----QEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HCCCHHHHHHHHHTTT-----CEEECCTTCCHHH-----HHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCC-----eEEEEeCCCCccc-----cHHHHHHHHHHHHHHHH
Confidence 10 0246777776653 3555554431000 01578899998887664
No 165
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.61 E-value=1.7e-15 Score=161.05 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=108.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh-hhH-
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA-DYI- 89 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~-~~~- 89 (593)
.++|+++|.+|+|||||+++|++...... ....|+|.+.....+..++..+.||||||+. ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v---------------s~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV---------------TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC---------------CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc---------------CCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 37999999999999999999997521110 0122566666666677788899999999987 542
Q ss_pred -------HHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 90 -------KNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 90 -------~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
..+...+..+|++|+|+|++++...+..+.+..+ .+.| +++++||+|+.+... .+ ++.+++ +
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~-~~----~~~~~~---~ 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-EE----EIKNKL---G 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-HH----HHHHHH---T
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccC-HH----HHHHHh---c
Confidence 4456677899999999999887665555544443 3667 555689999975311 11 223332 2
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...+++++||++| .++++|+++|.+.+
T Consensus 377 ---~~~~~i~iSAktg----------~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 ---TDRHMVKISALKG----------EGLEKLEESIYRET 403 (482)
T ss_dssp ---CSTTEEEEEGGGT----------CCHHHHHHHHHHHT
T ss_pred ---CCCcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 2468999999998 68999999887754
No 166
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.61 E-value=1.3e-14 Score=133.92 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=93.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+.++|+++|..|+|||||+++|++..... + ....+... .....+......+.+|||||++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-------~--------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 67 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-------L--------EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA 67 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-------C--------SSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-------c--------CCCcceeE-EEEEEECCEEEEEEEEECCCCchh
Confidence 3577999999999999999999998642110 0 00111111 112222222345789999999873
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCChhh-HHHHHHHHH------cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPMPQT-REHILLARQ------VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~~qt-~e~l~~~~~------l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
..++.+|++++|+|+++...-+. ..++..+.. .++| ++++.||+|+.+.... .....+..++.+..
T Consensus 68 -----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~ 140 (178)
T 2iwr_A 68 -----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR-VVGDARARALXADM 140 (178)
T ss_dssp -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCC-CSCHHHHHHHHHHH
T ss_pred -----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccC-cCCHHHHHHHHHhh
Confidence 34568999999999987332122 222112222 2566 5556799998421000 00011233343333
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+ .++++++||++| .+++++++.|.+.+
T Consensus 141 ~----~~~~~~~Sa~~~----------~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 141 K----RCSYYETXATYG----------LNVDRVFQEVAQKV 167 (178)
T ss_dssp S----SEEEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred c----CCeEEEEecccc----------CCHHHHHHHHHHHH
Confidence 2 468999999998 68899988886543
No 167
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.60 E-value=3.7e-15 Score=160.91 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=110.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
.++.++|+++|.+|+|||||+++|++... .. ...|++.....++..+..+.||||||+++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~-------~~------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQS-------VT------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKI 379 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSC-------CC------------CCCCSSEEEEEEESSSCEEEEEEECCCGGG
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCC-------CC------------cCCccceeEEEEEeCCEEEEEEECCCcHHH
Confidence 35679999999999999999999986421 00 011333444456677889999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
...+...+..+|++|+|+|+++... ....+.+..+.. .++| +|+++||+|+.+.... + ++.+.+.....
T Consensus 380 ~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~----~~~~~~~~~~~ 453 (497)
T 3lvq_E 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQEKLGLTRI 453 (497)
T ss_dssp SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCCH-H----HHHHHTTCTTC
T ss_pred HHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCCH-H----HHHHHhchhhh
Confidence 8888888899999999999988432 222223322222 3677 4556799999764111 1 22222222112
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
....++++++||++| .|+++++++|.+.+.
T Consensus 454 ~~~~~~~~~~SA~~g----------~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 454 RDRNWYVQPSCATSG----------DGLYEGLTWLTSNYK 483 (497)
T ss_dssp CSSCEEEEECBTTTT----------BTHHHHHHHHHHHCC
T ss_pred hcCCeEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 224578999999998 789999999988764
No 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.39 E-value=7.4e-17 Score=152.82 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=101.1
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEe--eeeEEeeCCeEEEEEecCCh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT--AHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~~~iiDtpGh 85 (593)
..+..++|+++|++|+|||||+++|++...... ....+.+. ....+......+.+|||||+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88 (204)
Confidence 346779999999999999999999975421100 00011111 11122223445669999999
Q ss_pred hhhHHHHHHhhhcCCEEEEEEECCCCCChhh-H-HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------HH
Q psy8869 86 ADYIKNMITGAAQMDGAILVCSAADGPMPQT-R-EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EI 152 (593)
Q Consensus 86 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt-~-e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~~ 152 (593)
++|...+...+..+|++++|+|+++...-+. . ..+..+... ++|. ++++||+|+.+.....+.+ ..
T Consensus 89 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
Confidence 9999888888889999999999987543222 2 233333333 6774 4567999997642211111 11
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhh
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDT 200 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~ 200 (593)
+...+.+..+ ..+++++||++| .++++++++|.+
T Consensus 168 ~~~~~~~~~~----~~~~~~vSA~~g----------~gi~~l~~~l~~ 201 (204)
T 3th5_A 168 QGLAMAKEIG----AVKYLECSALTQ----------RGLKTVFDEAIR 201 (204)
Confidence 2223333222 138999999998 678888887754
No 169
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.58 E-value=3.9e-15 Score=157.56 Aligned_cols=154 Identities=22% Similarity=0.226 Sum_probs=100.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK 90 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~ 90 (593)
..++|+++|++|+|||||+++|++....... + ..|+|.+.....+..++..+.||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~---------~------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT---------D------LPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS---------C------CTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc---------C------CCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 4578999999999999999999875321110 0 124555554455667888999999999876532
Q ss_pred --------HHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 91 --------NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 91 --------~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
.+...+..+|++++|+|++++...+..+.+..+. ..| +++++||+|+.+..... .++.+.
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~~---------~~~~~~ 355 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLIT---------SLEYPE 355 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGST---------TCCCCT
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhhH---------HHHHhc
Confidence 2334567899999999999977766665555443 356 55668999998753210 111111
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
...+++++||++| .|+++|++.|.+.+..
T Consensus 356 ---~~~~~i~iSAktg----------~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 356 ---NITQIVHTAAAQK----------QGIDSLETAILEIVQT 384 (462)
T ss_dssp ---TCCCEEEEBTTTT----------BSHHHHHHHHHHHHTT
T ss_pred ---cCCcEEEEECCCC----------CCHHHHHHHHHHHHhc
Confidence 3578999999998 7899999999887653
No 170
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.58 E-value=8e-15 Score=149.65 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=105.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeE--EEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARH--YAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~iiDtpGh~~ 87 (593)
+..++|+++|.+|+|||||+++|+...... . ..+.+.+.....+..++.. +.||||||+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~------------~-----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPG------------E-----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCC------------S-----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCc------------c-----cCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 456899999999999999999998532100 0 0112222222333444444 45999999999
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCChhhH--HHHHHHHHc--CCCeEEEEEeecCCCCHHHHHHHH---------HHHH
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKADMVDDEELLELV---------EIEI 154 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~~qt~--e~l~~~~~l--~ip~iiVvvNK~Dl~~~~~~~~~~---------~~~~ 154 (593)
|...+...+..+|++++|+|+++....+.. ..+..+... ++|. ++++||+|+.+.....+.+ ..+.
T Consensus 216 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCE-EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcE-EEEEEchhcccccchhhhccccccccccHHHH
Confidence 988888888899999999999874322221 223334433 6775 4567999986542221111 1233
Q ss_pred HHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 155 RELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 155 ~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
..+.+..+. .+++++||++| .+++++++.|.+.+
T Consensus 295 ~~~~~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 295 LAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHcCC----cEEEEecCCCC----------cCHHHHHHHHHHHH
Confidence 445554432 48999999998 68999999887654
No 171
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.9e-14 Score=136.73 Aligned_cols=160 Identities=21% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHA 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~ 86 (593)
....++|+++|.+|+|||||+++|++..... .. ... ..|.+.... .+..++. .+.+|||+|.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~-----------~~-~~~-~~g~d~~~~--~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSM-----------DS-DCE-VLGEDTYER--TLMVDGESATIILLDMWENK 98 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTT-----------CC-C----CCTTEEEE--EEEETTEEEEEEEECCTTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------CC-cCC-ccceeeEEE--EEEECCeeeEEEEeecCCCc
Confidence 3467999999999999999999997421100 00 000 122222222 2333443 46789999987
Q ss_pred hh-HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 87 DY-IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 87 ~~-~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
.. .......++.+|++++|+|.++.. +....+.+..+.. .++| +|+|.||+|+.+...... .+...+...
T Consensus 99 ~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~~---~e~~~~a~~ 174 (211)
T 2g3y_A 99 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVSV---SEGRACAVV 174 (211)
T ss_dssp HHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSCH---HHHHHHHHH
T ss_pred chhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEeH---HHHHHHHHH
Confidence 73 222333456799999999998721 1222222222332 2677 455679999964311100 111222233
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
. .++++++||++| .+++++++.|.+.+
T Consensus 175 ~-----~~~~~e~SAk~g----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 175 F-----DCKFIETSAAVQ----------HNVKELFEGIVRQV 201 (211)
T ss_dssp H-----TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred c-----CCEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 2 368999999998 68999999887654
No 172
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=8.4e-15 Score=140.07 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=87.8
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD 87 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~ 87 (593)
.....++|+++|++|+|||||+++|++...... . . ....|+.. ......+.+|||||+++
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~------~------~~~~~~~~-----~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---V------V------SQEPLSAA-----DYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB---C------C------CSSCEEET-----TGGGSSCEEEECCCCGG
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe---e------e------ecCceEEE-----EeeCceEEEEECCCcHH
Confidence 345678999999999999999999986421100 0 0 00111111 11456789999999999
Q ss_pred hHHHHHHhhhc----CCEEEEEEECC-C-CCChhhHHHHHHHHH-------cCCCeEEEEEeecCCCCH---HHHHHHHH
Q psy8869 88 YIKNMITGAAQ----MDGAILVCSAA-D-GPMPQTREHILLARQ-------VGVPYIVVFLNKADMVDD---EELLELVE 151 (593)
Q Consensus 88 ~~~~~~~~~~~----~d~~ilVvda~-~-g~~~qt~e~l~~~~~-------l~ip~iiVvvNK~Dl~~~---~~~~~~~~ 151 (593)
|...+...+.. +|++++|+|++ + ..+....+++..+.. .++|. ++++||+|+.+. +...+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~~~~l~ 146 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSELFTARPPSKIKDALE 146 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTTSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCE-EEEEEchHhcccCCHHHHHHHHH
Confidence 98777777765 89999999998 3 233444444433322 36774 556799999864 23333444
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCcccc
Q psy8869 152 IEIRELLNKYEFPGNDIPIIKGSAKLALE 180 (593)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~ 180 (593)
.++..+.... ..+++++||++|.+
T Consensus 147 ~~~~~~~~~~-----~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 147 SEIQKVIERR-----KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHH-----HHHHHC--------
T ss_pred HHHHHHHHHH-----hccccccccccccc
Confidence 4455554433 35789999998754
No 173
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.55 E-value=3.7e-14 Score=137.79 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=99.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCC----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPG---- 84 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpG---- 84 (593)
....++|+++|++|+|||||+++|++.... .......++|.+.....+..++..+.||||||
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVF--------------HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCS--------------CC-------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcC--------------ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 346799999999999999999999854211 01111224555555566777889999999999
Q ss_pred -------hhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHH-----HcCCCeEEEEEeecCCCCHHHHHHHH--
Q psy8869 85 -------HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDEELLELV-- 150 (593)
Q Consensus 85 -------h~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~-----~l~ip~iiVvvNK~Dl~~~~~~~~~~-- 150 (593)
...+...+...+..+|++|+|+|++.. .....+.+..+. ....| +++++||+|+.+.....+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~ 169 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLRE 169 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC-----------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHh
Confidence 345555555666788999999999753 333444443332 12346 55568999988653222112
Q ss_pred -HHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 151 -EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 151 -~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
...++++++.++. .++++++..+.+. ...++.+|++.+...+
T Consensus 170 ~~~~l~~l~~~~~~-----~~~~~~~~~~~~~-----~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 170 APEDIQDLMDIFGD-----RYCALNNKATGAE-----QEAQRAQLLGLIQRVV 212 (239)
T ss_dssp -CHHHHHHHHHHSS-----SEEECCTTCCHHH-----HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCC-----EEEEEECCCCccc-----cHHHHHHHHHHHHHHH
Confidence 2356667776653 3566665432100 0136788888876654
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.55 E-value=3.5e-14 Score=145.90 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=101.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh--------
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH-------- 85 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh-------- 85 (593)
.|+++|.+|+|||||+++|++.... .+...+.|.+.....+..++..+.++||||+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~----------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~l 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQK----------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQI 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc----------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHH
Confidence 4999999999999999999854211 0112245555555666777788999999996
Q ss_pred -hhhHHHHHHhhhcCCEEEEEEECCCCC---ChhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 86 -ADYIKNMITGAAQMDGAILVCSAADGP---MPQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 86 -~~~~~~~~~~~~~~d~~ilVvda~~g~---~~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
+.| ..+...+..+|.+++|+|+++.. ..+.......+.. .+.| +|+|.||+|+.+... ......+..+.
T Consensus 245 ve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~l~ 320 (364)
T 2qtf_A 245 VDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDL--YKKLDLVEKLS 320 (364)
T ss_dssp HHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCH--HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchH--HHHHHHHHHHH
Confidence 233 34556678999999999998753 1222222233333 3567 555689999986421 11112232333
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
..+.. ...+++++||++| .++++|++.|.+.+..+
T Consensus 321 ~~l~~--~~~~~~~~SA~~g----------~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 321 KELYS--PIFDVIPISALKR----------TNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHCS--CEEEEEECBTTTT----------BSHHHHHHHHHHHHHHH
T ss_pred HHhcC--CCCcEEEEECCCC----------cCHHHHHHHHHHHhccc
Confidence 33311 1457899999998 68999999988766543
No 175
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.54 E-value=4.1e-15 Score=151.29 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=101.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD---- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~---- 87 (593)
.+|+++|.+|+|||||+++|+........ ....|.......+..++ ..+.|+||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~----------------~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD----------------YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESS----------------TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcccc----------------CCccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 36899999999999999999753211100 01233333333445554 7899999999654
Q ss_pred ---hHHHHHHhhhcCCEEEEEEECCCC----CChhhHHHHHHHHH-----cCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 88 ---YIKNMITGAAQMDGAILVCSAADG----PMPQTREHILLARQ-----VGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 88 ---~~~~~~~~~~~~d~~ilVvda~~g----~~~qt~e~l~~~~~-----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
+...++..+..+|++|+|+|+++. ...+....+..+.. .++|.++ ++||+|+.+.++. +.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~il-V~NK~Dl~~~~e~-------~~ 294 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII-VANKMDMPEAAEN-------LE 294 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCB-EEECTTSTTHHHH-------HH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEE-EEECccCCCCHHH-------HH
Confidence 345556666789999999999762 22233333444444 3677555 6799999875322 22
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
++.+.+.. ..+++++||+++ .++++|+++|.+.+..
T Consensus 295 ~l~~~l~~---~~~v~~iSA~tg----------~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 295 AFKEKLTD---DYPVFPISAVTR----------EGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHHCCS---CCCBCCCSSCCS----------STTHHHHHHHHHHHTS
T ss_pred HHHHHhhc---CCCEEEEECCCC----------cCHHHHHHHHHHHHhh
Confidence 33333321 267999999998 6889999998877653
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=1.8e-13 Score=129.82 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh--
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA-- 86 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~-- 86 (593)
-.+..+|+++|++|+|||||+++|++.... .......|.|.......+ ++ .+.++||||+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~~~~~--~~-~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLINLFEV--AD-GKRLVDLPGYGYA 85 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEE--ET-TEEEEECCCCC--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeEEEEe--cC-CEEEEECcCCccc
Confidence 346689999999999999999998753200 000112344433322222 22 57899999973
Q ss_pred --------hhHHHH---HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 87 --------DYIKNM---ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 87 --------~~~~~~---~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
.|...+ ......+|.+++++|+..+......+....+...++|.++ +.||+|+.+..+.. .....+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~nK~D~~s~~~~~-~~~~~~~ 163 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARK-AQLNMVR 163 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHH-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEecccCCCchhHH-HHHHHHH
Confidence 232222 2222468999999999987665554555666677899655 57999998763321 1123455
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.++..... .++++|+||+++ .++.++++.|.+.++
T Consensus 164 ~~~~~~~~---~~~~~~~Sal~~----------~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 164 EAVLAFNG---DVQVETFSSLKK----------QGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHGGGCS---CEEEEECBTTTT----------BSHHHHHHHHHHHHC
T ss_pred HHHHhcCC---CCceEEEeecCC----------CCHHHHHHHHHHHHh
Confidence 55554432 468999999997 688999999887654
No 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.51 E-value=7.8e-14 Score=130.65 Aligned_cols=159 Identities=20% Similarity=0.163 Sum_probs=91.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~~ 87 (593)
.+.++|+++|.+|+|||||+++|++..... . .... ..|.+.... .+..++. .+.+|||+|.+.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~----------~--~~~~-~~~~~~~~~--~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSM----------D--SDXE-VLGEDTYER--TLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----------------G-GGCTTEEEE--EEEETTEEEEEEEECCCCC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCc----------C--cccc-ccceeEEEE--EEEECCeEEEEEEEEeccCcc
Confidence 567999999999999999999998531100 0 0000 122222222 2333443 457899999765
Q ss_pred h-HHHHHHhhhcCCEEEEEEECCCCC-ChhhHHHHHHHHH----cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhc
Q psy8869 88 Y-IKNMITGAAQMDGAILVCSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY 161 (593)
Q Consensus 88 ~-~~~~~~~~~~~d~~ilVvda~~g~-~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (593)
. .......++.+|++++|+|.++.. +....+.+..+.. .++| ++++.||+|+.+..... ..+...+....
T Consensus 69 ~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~---~~~~~~~a~~~ 144 (192)
T 2cjw_A 69 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVS---VSEGRAXAVVF 144 (192)
T ss_dssp --CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT
T ss_pred hhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhcccccc---HHHHHHHHHHh
Confidence 2 112223456799999999998722 1222222222322 2677 45567999986421110 01112222222
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++++||++| .+++++++.|.+.+
T Consensus 145 -----~~~~~e~SA~~g----------~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 -----DXKFIETSAAVQ----------HNVKELFEGIVRQV 170 (192)
T ss_dssp -----TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred -----CCceEEeccccC----------CCHHHHHHHHHHHH
Confidence 368999999998 68899998887654
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=1.7e-13 Score=141.13 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=100.1
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
...++|+++|.+|+|||||+++|++.....+. ..+.|.+.....+...+..+.+|||||+.++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----------------CTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 46689999999999999999999854211100 11223333334445567789999999975431
Q ss_pred --------HHHHHh-hhcCCEEEEEEECCCCC--Chh-hHHHHHHHHH-c-CCCeEEEEEeecCCCCHHHHHHHHHHHHH
Q psy8869 90 --------KNMITG-AAQMDGAILVCSAADGP--MPQ-TREHILLARQ-V-GVPYIVVFLNKADMVDDEELLELVEIEIR 155 (593)
Q Consensus 90 --------~~~~~~-~~~~d~~ilVvda~~g~--~~q-t~e~l~~~~~-l-~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~ 155 (593)
...... ...+|.+++|+|++... ..+ ..+.+..+.. . +.|. ++++||+|+.+.... + +..
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pi-ilV~NK~Dl~~~~~~-~----~~~ 302 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF-LVVINKIDVADEENI-K----RLE 302 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCE-EEEECCTTTCCHHHH-H----HHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCE-EEEEECcccCChHHH-H----HHH
Confidence 122222 34699999999987643 222 2333333333 3 6774 556899999876432 2 233
Q ss_pred HHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 156 ELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 156 ~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++++.. .+|++++||++| .|+++|+++|.+.+
T Consensus 303 ~~~~~~-----~~~~~~iSA~~g----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 303 KFVKEK-----GLNPIKISALKG----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHT-----TCCCEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHhc-----CCCeEEEeCCCC----------cCHHHHHHHHHHHH
Confidence 333332 467999999998 78999999887654
No 179
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.50 E-value=7.4e-14 Score=139.39 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=97.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhHH---
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYIK--- 90 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~--- 90 (593)
+|+++|..|+|||||+.++.+..... +....+.|+......+. ....+.||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~---------------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL---------------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG---------------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC---------------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 58999999999999998776321100 00112334433333332 336789999999999953
Q ss_pred HHHHhhhcCCEEEEEEECCCCCChhhHHHH----HHHHH--cCCCeEEEEEeecCCCCHHHH---HHHHHHHHHHHHhhc
Q psy8869 91 NMITGAAQMDGAILVCSAADGPMPQTREHI----LLARQ--VGVPYIVVFLNKADMVDDEEL---LELVEIEIRELLNKY 161 (593)
Q Consensus 91 ~~~~~~~~~d~~ilVvda~~g~~~qt~e~l----~~~~~--l~ip~iiVvvNK~Dl~~~~~~---~~~~~~~~~~~l~~~ 161 (593)
.+...++.++++|+|+|+++. +....+.+ ..+.. -++|. +++.||+|+.+.+++ .+.+..+..+-+...
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipi-llvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINI-EVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEE-EEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcE-EEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 345667899999999999986 44444433 22222 25674 456799999875332 223333333333332
Q ss_pred CCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 162 EFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 162 ~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++...+++++.+||++. ++.+.+..+...+
T Consensus 143 ~~~~~~i~f~eTSAkd~-----------nV~eAFs~iv~~l 172 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFDH-----------SIYEAFSRIVQKL 172 (331)
T ss_dssp SCSCCCEEEECCCSSSS-----------HHHHHHHHHHTTS
T ss_pred cccccCceEEEeccCCC-----------cHHHHHHHHHHHH
Confidence 22123689999999873 5666666555433
No 180
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.49 E-value=2.2e-14 Score=156.09 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=101.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEee------eeEE--eeCCeEEEEE
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA------HIEY--ETKARHYAHV 80 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~------~~~~--~~~~~~~~ii 80 (593)
....++|+++|.+|+|||||+++|++...... .....|.++... ...+ +.....+.+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEE
Confidence 45779999999999999999999986432110 011122222211 1111 1235789999
Q ss_pred ecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC--CCeEEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy8869 81 DCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVDDEELLELVEIEIRELL 158 (593)
Q Consensus 81 DtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~--ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l 158 (593)
||||++.|.......++.+|++++|+|+++. ......+..+...+ +|.+ +|.||+|+.+..... ..++++.+
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~~~~~v~---~~~~~~~~ 177 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVI-VVMNKIDENPSYNIE---QKKINERF 177 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEE-EEECCTTTCTTCCCC---HHHHHHHC
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEE-EEEECCCcccccccC---HHHHHHHH
Confidence 9999999887776777889999999999864 34444555566554 7854 567999997642210 12344555
Q ss_pred hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 159 NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 159 ~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
... ..+++++||++| .|+++|++.|...+..
T Consensus 178 ~~~-----~~~~~~vSA~~g----------~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 178 PAI-----ENRFHRISCKNG----------DGVESIAKSLKSAVLH 208 (535)
T ss_dssp GGG-----TTCEEECCC---------------CTTHHHHHHHHHTC
T ss_pred Hhc-----CCceEEEecCcc----------cCHHHHHHHHHHHHhc
Confidence 444 357999999998 5777888887776543
No 181
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.48 E-value=1.7e-13 Score=129.07 Aligned_cols=157 Identities=19% Similarity=0.157 Sum_probs=97.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~ 88 (593)
..++|+++|+.|+|||||+++|++..... ......|.+.... .+..++ ..+.+||+||+++|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~~~~~--~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATR--SIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCEEEEE--EEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEE--EEEECCEEEEEEEEECCCchhh
Confidence 46899999999999999999998642110 0001112222222 333444 35678999999988
Q ss_pred HHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy8869 89 IKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFP 164 (593)
Q Consensus 89 ~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (593)
.......+..+|++++|+|+.+... ......+..+.. .+.| +++++||+|+.+..... ..+...++...
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~--- 140 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKN--- 140 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHT---
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHc---
Confidence 7655556678999999999987322 222223333332 2445 55678999986531110 01233444443
Q ss_pred CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 165 GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 165 ~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
.++++.+||+++ .++.++++.|.+.+
T Consensus 141 --~~~~~d~Sal~~----------~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 141 --NLSFIETSALDS----------TNVEEAFKNILTEI 166 (199)
T ss_dssp --TCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 467999999997 67888888776543
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.46 E-value=2.3e-13 Score=134.04 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=77.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY- 88 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~- 88 (593)
.+.++|+++|++|+|||||+++|++..... . ....+.|.......+..++..+.||||||+.+|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~----------~-----~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR----------V-----SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC----------C-----CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc----------c-----CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 467999999999999999999998532100 0 112344555555667778889999999998765
Q ss_pred ------HHHHHHhh--hcCCEEEEEEECCCC-CChhhHHHHHHHHHc-C---CCeEEEEEeecCCCC
Q psy8869 89 ------IKNMITGA--AQMDGAILVCSAADG-PMPQTREHILLARQV-G---VPYIVVFLNKADMVD 142 (593)
Q Consensus 89 ------~~~~~~~~--~~~d~~ilVvda~~g-~~~qt~e~l~~~~~l-~---ip~iiVvvNK~Dl~~ 142 (593)
.......+ ..+|++++|+|.+.. ......+.+..+... + ..++++++||+|+.+
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 22222222 278999999988763 333334455444442 3 123666789999963
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.46 E-value=2.5e-13 Score=151.25 Aligned_cols=127 Identities=18% Similarity=0.204 Sum_probs=77.6
Q ss_pred eEEEEEecCChhh---hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHH-HHHHcCCCeEEEEEeecCCCCHH------
Q psy8869 75 RHYAHVDCPGHAD---YIKNMITGAAQMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVFLNKADMVDDE------ 144 (593)
Q Consensus 75 ~~~~iiDtpGh~~---~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~-~~~~l~ip~iiVvvNK~Dl~~~~------ 144 (593)
..+.||||||..+ ....+...+..+|++|+|+|++++......+.+. .+...+.| +++|+||+|+.+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGGCSSTTC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccccccChhh
Confidence 4689999999765 3455566778999999999999877666665553 44445778 55568999986432
Q ss_pred -HHHHH----HHHHHHHHHhhc-C---CCCCCceEEEeccCcccc----CCCCCCCcCcHHHHHHHhhhhC
Q psy8869 145 -ELLEL----VEIEIRELLNKY-E---FPGNDIPIIKGSAKLALE----GDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 145 -~~~~~----~~~~~~~~l~~~-~---~~~~~~~vi~~Sa~~g~~----~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+..+. +...+...+... + +.....+++++||+.+.. .....+.+.++.+|.+.|...+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 01222 222222223221 1 111245799999992111 1111112368889888887654
No 184
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.44 E-value=2.1e-13 Score=137.02 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=62.2
Q ss_pred CeEEEEEecCChh-------------hhHHHHHHhhhcCCEEE-EEEECCCCCChhhH-HHHHHHHHcCCCeEEEEEeec
Q psy8869 74 ARHYAHVDCPGHA-------------DYIKNMITGAAQMDGAI-LVCSAADGPMPQTR-EHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 74 ~~~~~iiDtpGh~-------------~~~~~~~~~~~~~d~~i-lVvda~~g~~~qt~-e~l~~~~~l~ip~iiVvvNK~ 138 (593)
...+.||||||+. .+...+..++..++.++ +|+|++.+...+.. ..+..+...+.|. ++|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~-i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRT-IGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSE-EEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeE-EEEEEcc
Confidence 4679999999953 34455556677888776 69999987766654 3455555567785 4568999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccc
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~ 179 (593)
|+.+.... ....++..+ ........+++++||++|.
T Consensus 203 Dl~~~~~~---~~~~~~~~~--~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 203 DLMDEGTD---ARDVLENKL--LPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp GGSCTTCC---CHHHHTTCS--SCCTTCEEECCCCCCBCTT
T ss_pred ccCCCCch---HHHHHhCCc--CcCCCCcEEEECCChhhcc
Confidence 99864221 111111111 1111113588999999983
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.44 E-value=9.6e-13 Score=130.21 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=101.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhhH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADYI 89 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~ 89 (593)
.+.++|+++|++|+|||||+++|++...... ....+.|.......++.++..+.||||||+.++.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI---------------SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc---------------cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 4679999999999999999999985321000 0012334444445566778899999999986552
Q ss_pred -------HHHHHh--hhcCCEEEEEEECCC-CCChhhHHHHHHHHHc-C----CCeEEEEEeecCCCCHH-----HHHHH
Q psy8869 90 -------KNMITG--AAQMDGAILVCSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKADMVDDE-----ELLEL 149 (593)
Q Consensus 90 -------~~~~~~--~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l-~----ip~iiVvvNK~Dl~~~~-----~~~~~ 149 (593)
..+... ...+|++++|+|++. .......+.+..+... + .| +++++||+|+.+++ +..+.
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCGGGCCHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCcCCCCHHHHHHH
Confidence 222222 237899999998865 3333444555544432 4 35 66678999997542 33333
Q ss_pred HHHHHHHHHhh-cCCC----CCCceEEEeccCccc--cCCCC---CCCcCcHHHHHHHhhhhCCC
Q psy8869 150 VEIEIRELLNK-YEFP----GNDIPIIKGSAKLAL--EGDTG---PLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 150 ~~~~~~~~l~~-~~~~----~~~~~vi~~Sa~~g~--~~~~~---w~~~~~~~~ll~~l~~~l~~ 204 (593)
....+...++. .++. ...+|+..+++.... +.... .........|++.|...+..
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~ 245 (270)
T 1h65_A 181 RSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALN 245 (270)
T ss_dssp HHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhc
Confidence 33444444432 1111 112577776553210 10000 00011245788888776543
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=140.65 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=85.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCe--EEEEEecCChh--
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKAR--HYAHVDCPGHA-- 86 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~~~iiDtpGh~-- 86 (593)
..++|+++|++|+|||||+++|++...... ..+.....+...+++++.....+..++. .+++|||||+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~-------~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPE-------RVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCC-------CcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 458999999999999999999864311100 0011111222233444333333333433 68899999983
Q ss_pred -----hhHH----------HHHHhhh----------cCCEEEEEEEC-CCCCChhhHHHHHHHHHcCCCeEEEEEeecCC
Q psy8869 87 -----DYIK----------NMITGAA----------QMDGAILVCSA-ADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 87 -----~~~~----------~~~~~~~----------~~d~~ilVvda-~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl 140 (593)
.|.. ..+.... .+|+++++|++ .++......+.+..+ ..++| +|+|+||+|+
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~p-iIlV~NK~Dl 186 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVN-IVPVIAKADT 186 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SC-EEEEEECCSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCC-EEEEEECCCC
Confidence 3311 1121111 13578888887 445555444444433 34677 5556899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCCC
Q psy8869 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205 (593)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~~ 205 (593)
.+..+. ...+.++.++++.. .++++++||++|.+ + ..+..+++.|...+|.+
T Consensus 187 ~~~~ev-~~~k~~i~~~~~~~-----~i~~~~~Sa~~~~~-~------e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 187 LTLKER-ERLKKRILDEIEEH-----NIKIYHLPDAESDE-D------EDFKEQTRLLKASIPFS 238 (361)
T ss_dssp SCHHHH-HHHHHHHHHHTTCC------CCSCCCC----------------CHHHHHHHHHTCSCE
T ss_pred CCHHHH-HHHHHHHHHHHHHC-----CCCEEeCCCcCCCc-c------hhHHHHHHHHHhcCCCC
Confidence 986432 33334555555543 46899999998743 1 35667788887766543
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=2.9e-13 Score=139.27 Aligned_cols=174 Identities=18% Similarity=0.125 Sum_probs=104.1
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCC-------------Chhh---hhcCceEEeee-----
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDA-------------APEE---KARGITINTAH----- 67 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~-------------~~~e---~~~g~t~~~~~----- 67 (593)
.+...+|+++|++|+|||||+++|.......+...... ..|. ...+ ...+..+....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi--~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL--AVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--EEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE--ecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence 34668999999999999999999987764433211110 0110 0000 00111111000
Q ss_pred -----------eEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEe
Q psy8869 68 -----------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136 (593)
Q Consensus 68 -----------~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvN 136 (593)
..++..+..+.||||||...-. ...+..+|.+++|+|+..+...+... ...+.+|.++ ++|
T Consensus 154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~iv-VlN 225 (355)
T 3p32_A 154 GGVTRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIV-VVN 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEE-EEE
T ss_pred cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEE-EEE
Confidence 0113357889999999954322 22347899999999998754433221 1113457555 579
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCC--CCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 137 KADMVDDEELLELVEIEIRELLNKYEFP--GNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
|+|+.+... .+....++.+.+..+... .+..|++++||++| .|+++|+++|.+.++
T Consensus 226 K~Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 226 KADGEHHKE-ARLAARELSAAIRLIYPREALWRPPVLTMSAVEG----------RGLAELWDTVERHRQ 283 (355)
T ss_dssp CCCGGGHHH-HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT----------BSHHHHHHHHHHHHH
T ss_pred CCCCcChhH-HHHHHHHHHHHHhhccccccCCCCceEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 999986532 233444566555444321 23578999999998 789999999877653
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.42 E-value=2e-13 Score=138.25 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=73.6
Q ss_pred CCeEEEEEecCChhh-------------hHHHHHHhhhcCCEEEEEEEC-CCCCChhh-HHHHHHHHHcCCCeEEEEEee
Q psy8869 73 KARHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILVCSA-ADGPMPQT-REHILLARQVGVPYIVVFLNK 137 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~-------------~~~~~~~~~~~~d~~ilVvda-~~g~~~qt-~e~l~~~~~l~ip~iiVvvNK 137 (593)
....+.||||||+.+ +...+..++..+|++++|+|+ +.+...+. ...+..+...+.|.+ +++||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcC
Confidence 456899999999653 556666778899999999997 45554343 345556666688855 46899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 138 ADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 138 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
+|+.+.... ..+.++.. ......+++++|+..+.+.+. +.++.++++.+..+++.
T Consensus 208 ~Dl~~~~~~-------~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~----~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTD-------AMEVLTGR-VIPLTLGFIGVINRSQEDIIA----KKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCC-------CHHHHTTS-SSCCTTCEEECCCCCHHHHSS----SCCHHHHHHHHHHHHHT
T ss_pred cccCCcchH-------HHHHHhCC-CccCCCCeEEEecCChhhhcc----CCCHHHHHHHHHHHHhC
Confidence 999865320 11112211 011124577777766543111 15788888888776653
No 189
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.41 E-value=5.9e-13 Score=124.52 Aligned_cols=157 Identities=18% Similarity=0.115 Sum_probs=98.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeE--EEEEecCChhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARH--YAHVDCPGHAD 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~iiDtpGh~~ 87 (593)
...++|+++|+.|+|||||+++|++...... ....++.+.....+..++.. +.+||+||+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3468999999999999999999986421100 01122223333334445544 45799999988
Q ss_pred hHHHHHHhhhcCCEEEEEEECCCCCC-hhhHHHHHHHHH---cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 88 YIKNMITGAAQMDGAILVCSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 88 ~~~~~~~~~~~~d~~ilVvda~~g~~-~qt~e~l~~~~~---l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
|...+...+..+|.+++|+|..+... ......+..+.. .+.| +++++||+|+.+..... ..+.+.+....
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~-- 164 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKN-- 164 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHT--
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHc--
Confidence 87666666678899999999876321 122222322332 2445 56678999986531110 11233444432
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.++++.+||+++ .++.++++.|.+.
T Consensus 165 ---~~~~ld~Sald~----------~~v~~l~~~l~~~ 189 (191)
T 1oix_A 165 ---GLSFIETSALDS----------TNVEAAFQTILTE 189 (191)
T ss_dssp ---TCEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred ---CCEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 467999999997 6888999887653
No 190
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=99.40 E-value=5.4e-13 Score=97.87 Aligned_cols=55 Identities=51% Similarity=0.910 Sum_probs=52.8
Q ss_pred eecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCceeeC
Q psy8869 539 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 593 (593)
Q Consensus 539 ~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~l~~~ 593 (593)
.|++||.|+|++|||+|++|.|.+++.++++++|.+++|||.++++++.++++++
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek~ 58 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVKA 58 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEEC
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEEC
Confidence 5789999999999999999999999999889999999999999999999999985
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.40 E-value=1.5e-12 Score=133.00 Aligned_cols=174 Identities=16% Similarity=0.102 Sum_probs=99.0
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCcccccc----------cc-CCChhhh----hcCceEEee--------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD----------QI-DAAPEEK----ARGITINTA-------- 66 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~----------~~-d~~~~e~----~~g~t~~~~-------- 66 (593)
.+...|+++|++|+|||||++.|++.....+..-..... .+ +....+. .++.-....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 456789999999999999999998765433221110000 00 0000000 011100000
Q ss_pred -------eeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 67 -------HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 67 -------~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
...++..+..+.||||||+.++.... ...+|.+++|+|+..+...+.... ...++|.++ ++||+|
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~iv-v~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLI-VINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEE-EECCCC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEE-EEECCC
Confidence 00112457789999999977665433 478999999999976543222111 112467555 579999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCC--CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 140 MVDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+.+... +.....++++.+..++. ..+..+++++||++| .++++|+++|...+
T Consensus 206 l~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTN-VAIARHMYESALHILRRKYDEWQPRVLTCSALEK----------RGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHH-HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred CCChHH-HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 987532 22233345555544332 112468999999998 68999999887654
No 192
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.2e-13 Score=126.24 Aligned_cols=128 Identities=17% Similarity=0.232 Sum_probs=74.6
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHADY 88 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~ 88 (593)
..+.++|+++|+.|+|||||+++|++..... .......+++. ......+.+|||||+.+|
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-------------~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------------TVVSQEPLSAA-------DYDGSGVTLVDFPGHVKL 104 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCc-------------ccccCCCceee-------eecCCeEEEEECCCCchH
Confidence 3566899999999999999999998642100 00000111111 114566889999999887
Q ss_pred HHHHHHhhh----cCCEEEEEEECC-CC-CChhhHHHHHHHHH-------cCCCeEEEEEeecCCCCH---HHHHHHHHH
Q psy8869 89 IKNMITGAA----QMDGAILVCSAA-DG-PMPQTREHILLARQ-------VGVPYIVVFLNKADMVDD---EELLELVEI 152 (593)
Q Consensus 89 ~~~~~~~~~----~~d~~ilVvda~-~g-~~~qt~e~l~~~~~-------l~ip~iiVvvNK~Dl~~~---~~~~~~~~~ 152 (593)
...+...+. .+|++++|+|++ .. ......+.+..+.. .++|. ++++||+|+.+. ++..+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp SCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCE-EEEEEchHhcCCCCHHHHHHHHHH
Confidence 554444444 389999999998 31 11222233322221 26775 456799999864 233334444
Q ss_pred HHHHH
Q psy8869 153 EIREL 157 (593)
Q Consensus 153 ~~~~~ 157 (593)
++..+
T Consensus 184 ~l~~l 188 (193)
T 2ged_A 184 EIQKV 188 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.39 E-value=8.5e-13 Score=129.37 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=55.4
Q ss_pred cCCEEEEEEECCCC---CChhhHHHHHHHH----HcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceE
Q psy8869 98 QMDGAILVCSAADG---PMPQTREHILLAR----QVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPI 170 (593)
Q Consensus 98 ~~d~~ilVvda~~g---~~~qt~e~l~~~~----~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 170 (593)
.+|++|+|+|+++. .+......+..+. ..++|. +++.||+|+.+.... .+..++.+.. ..+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pi-ilV~NK~Dl~~~~~v-----~~~~~~~~~~----~~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPI-VVVLTKCDEGVERYI-----RDAHTFALSK----KNLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCE-EEEEECGGGBCHHHH-----HHHHHHHHTS----SSCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCE-EEEEEcccccccHHH-----HHHHHHHHhc----CCCeE
Confidence 69999999999874 3333333333332 246775 456799999765322 2444444432 14689
Q ss_pred EEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 171 IKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 171 i~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
+++||++| .++++++++|.+.
T Consensus 232 ~e~SAk~g----------~gv~elf~~l~~~ 252 (255)
T 3c5h_A 232 VETSARSN----------VNVDLAFSTLVQL 252 (255)
T ss_dssp EECBTTTT----------BSHHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHHH
Confidence 99999998 6899999988764
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=1.6e-12 Score=135.05 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=45.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeE--E-------------------e
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--Y-------------------E 71 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~-------------------~ 71 (593)
++|+++|.+|+|||||+++|++....... ..+.|++..... + .
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~----------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN----------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 48999999999999999999865311100 112222211110 0 0
Q ss_pred eC---CeEEEEEecCChhhhH-------HHHHHhhhcCCEEEEEEECCCC
Q psy8869 72 TK---ARHYAHVDCPGHADYI-------KNMITGAAQMDGAILVCSAADG 111 (593)
Q Consensus 72 ~~---~~~~~iiDtpGh~~~~-------~~~~~~~~~~d~~ilVvda~~g 111 (593)
.+ ...+.||||||+.+.. ...+..++.+|++++|+|++++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 2468899999975431 2223456789999999999875
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=126.70 Aligned_cols=174 Identities=17% Similarity=0.110 Sum_probs=93.1
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCcccccc----------------ccCCChhhhhc------------Cc
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD----------------QIDAAPEEKAR------------GI 61 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~----------------~~d~~~~e~~~------------g~ 61 (593)
.+...|+++|.+|||||||+++|++.....+..-..... .|..+..+... |.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 346899999999999999999999765433211000000 00000000000 01
Q ss_pred eEEe--eeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 62 TINT--AHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 62 t~~~--~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
|-+. ....++..+..+.|+||||...-. ......+|++++|+|+..+...+ .+.. ..+..|.++ ++||+|
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~~iv-VlNK~D 223 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQ---GIKR-GIIEMADLV-AVTKSD 223 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEE-EECCCS
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHH---HhHH-HHHhcCCEE-EEeeec
Confidence 1000 000113467789999999953221 22246899999999998754322 1211 224667655 579999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCC--CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 140 MVDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
+.+.... .....++...++.... ..+..+++++||++| .|+++|+++|.+.+
T Consensus 224 l~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g----------~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 224 GDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSG----------EGISEMWDKMKDFQ 277 (349)
T ss_dssp GGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 9864221 1122234443332211 012468999999998 68999999887654
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=1.2e-11 Score=133.88 Aligned_cols=70 Identities=29% Similarity=0.258 Sum_probs=56.8
Q ss_pred eEEEEEecCChhh-----------hHHHHHHhhhcCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 75 RHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 75 ~~~~iiDtpGh~~-----------~~~~~~~~~~~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
..+.||||||+.+ |...+...+..+|++++|+|+++ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCccC
Confidence 3689999999875 66777777889999999999988 5777888888777777777 455689999998
Q ss_pred HHH
Q psy8869 143 DEE 145 (593)
Q Consensus 143 ~~~ 145 (593)
.++
T Consensus 233 ~~e 235 (550)
T 2qpt_A 233 TQQ 235 (550)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.27 E-value=4.1e-12 Score=121.55 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=95.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCC----hhhh-hcCceEE-eee---eEE----------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAA----PEEK-ARGITIN-TAH---IEY---------- 70 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~----~~e~-~~g~t~~-~~~---~~~---------- 70 (593)
+...+|+++|+.|+|||||+++|+.......+ .... ..|.. .... ..|.+.. ... ..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~-~~~i--~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVK-IGAM--LGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSC-EEEE--ECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCe-EEEE--ecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 35679999999999999999999976432211 0000 01110 0111 1133211 110 011
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH-HHHHH
Q psy8869 71 ETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLEL 149 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~-~~~~~ 149 (593)
...+..+.+|||+|+..... .....++.+++|+|+..+...+. ......++|.++ ++||+|+.+.. ...+.
T Consensus 105 ~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~ii-v~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLI-VINKVALAEAVGADVEK 176 (221)
T ss_dssp GGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEE-EEECGGGHHHHTCCHHH
T ss_pred hcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEE-EEecccCCcchhhHHHH
Confidence 23456799999999511000 00125789999999988653222 223335678665 57999986431 11222
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 150 VEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
+.+.++.++ ...+++++||++| .++.+++++|...+.
T Consensus 177 ----~~~~~~~~~---~~~~i~~~Sa~~g----------~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 177 ----MKADAKLIN---PRAKIIEMDLKTG----------KGFEEWIDFLRGILN 213 (221)
T ss_dssp ----HHHHHHHHC---TTSEEEECBTTTT----------BTHHHHHHHHHHHHC
T ss_pred ----HHHHHHHhC---CCCeEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 233333332 2578999999998 789999999887654
No 198
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=3.5e-11 Score=125.16 Aligned_cols=154 Identities=22% Similarity=0.291 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhh----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD---- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~---- 87 (593)
-.|+++|++|||||||+++|++......... ..|.......+..++ ..++++|+||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~----------------ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYP----------------FTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCT----------------TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcc----------------cceecceeeEEEecCcceEEEEeccccccchhh
Confidence 3589999999999999999985422111000 111112222233343 6789999999732
Q ss_pred ---hHHHHHHhhhcCCEEEEEEECCCCCChhhH----HHHHHHHH-cCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHh
Q psy8869 88 ---YIKNMITGAAQMDGAILVCSAADGPMPQTR----EHILLARQ-VGVPYIVVFLNKADMVDDEELLELVEIEIRELLN 159 (593)
Q Consensus 88 ---~~~~~~~~~~~~d~~ilVvda~~g~~~qt~----e~l~~~~~-l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (593)
+.......+..+|.++.|+|++.....+.. +...++.. ...|.++| +||+|+.+. +..+ ++.+.++
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILV-lNKlDl~~~-~~~~----~l~~~l~ 295 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA-LNKVDLLEE-EAVK----ALADALA 295 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEE-EECCTTSCH-HHHH----HHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEE-EECCChhhH-HHHH----HHHHHHH
Confidence 112233345679999999999721111111 11122222 35786664 699999875 3322 3334443
Q ss_pred hcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 160 KYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 160 ~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
.. ..+++++||+++ .++++|+++|.+.+.
T Consensus 296 ~~-----g~~vi~iSA~~g----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 RE-----GLAVLPVSALTG----------AGLPALKEALHALVR 324 (416)
T ss_dssp TT-----TSCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred hc-----CCeEEEEECCCc----------cCHHHHHHHHHHHHH
Confidence 32 367999999998 689999999887664
No 199
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.22 E-value=5.5e-12 Score=129.69 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=57.7
Q ss_pred CeEEEEEecCChh-------------hhHHHHHHhhhcC-CEEEEEEECCCCCChhhHH-HHHHHHHcCCCeEEEEEeec
Q psy8869 74 ARHYAHVDCPGHA-------------DYIKNMITGAAQM-DGAILVCSAADGPMPQTRE-HILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 74 ~~~~~iiDtpGh~-------------~~~~~~~~~~~~~-d~~ilVvda~~g~~~qt~e-~l~~~~~l~ip~iiVvvNK~ 138 (593)
...++||||||.. .+...+..++..+ +++++|+|++.+...+... .+..+...+.|.+ +|+||+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i-~V~NK~ 207 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTI-GVITKL 207 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEE-EEEECG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceE-EEeccc
Confidence 4679999999952 3344444455544 5666677887766555442 4444545577854 568999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh--cCCCCCCceEEEeccCcccc
Q psy8869 139 DMVDDEELLELVEIEIRELLNK--YEFPGNDIPIIKGSAKLALE 180 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~vi~~Sa~~g~~ 180 (593)
|+.+.... ..++++. ........+++++||+++.+
T Consensus 208 Dl~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~ 244 (353)
T 2x2e_A 208 DLMDEGTD-------ARDVLENKLLPLRRGYIGVVNRSQKDIDG 244 (353)
T ss_dssp GGSCTTCC-------CHHHHTTCSSCCTTCEEECCCCCHHHHHT
T ss_pred cccCcchh-------HHHHHhCCcccccCCceEEEeCCcccccc
Confidence 99864210 0111111 11111135788999999843
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.21 E-value=4.7e-11 Score=117.33 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=70.9
Q ss_pred CeEEEEEecCChhhhHHH------HHHhhhcCCEEEEEEECCCCCChhhHHH-----HHHHHHcCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKN------MITGAAQMDGAILVCSAADGPMPQTREH-----ILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~------~~~~~~~~d~~ilVvda~~g~~~qt~e~-----l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.+.+.||||||+.++... +...+.. +.+++|+|+........... +......++|.+ +++||+|+.+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI-PALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEE-EEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeE-EEEecccccc
Confidence 357999999998776432 2234455 89999999876554433221 122334578865 5689999987
Q ss_pred HHHHHHHHHHH---HHH---------------------HHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHh
Q psy8869 143 DEELLELVEIE---IRE---------------------LLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 198 (593)
Q Consensus 143 ~~~~~~~~~~~---~~~---------------------~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l 198 (593)
..+ .+.+... +.. +++.++. ..+++++||++| .++++|+++|
T Consensus 186 ~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~----------~gi~~l~~~i 251 (262)
T 1yrb_A 186 EEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTR----------EGFEDLETLA 251 (262)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTC----------TTHHHHHHHH
T ss_pred ccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCc----------ccHHHHHHHH
Confidence 532 1111111 111 1233322 357999999998 7899999998
Q ss_pred hhhCC
Q psy8869 199 DTYIP 203 (593)
Q Consensus 199 ~~~l~ 203 (593)
.+.++
T Consensus 252 ~~~~~ 256 (262)
T 1yrb_A 252 YEHYC 256 (262)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87653
No 201
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.15 E-value=3.5e-11 Score=124.03 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=59.8
Q ss_pred CeEEEEEecCChhhh-------------HHHHHHhhhcCCEEEEEEECCCC-CC-hhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 74 ARHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVCSAADG-PM-PQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~-------------~~~~~~~~~~~d~~ilVvda~~g-~~-~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
...++||||||..++ ...+..++..+|++|+|+|+... .. ....+.+..+...+.| +|+|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeCC
Confidence 557899999997765 55556677899999999987542 22 2223333333344677 45568999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCccc
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~ 179 (593)
|+.+..... .+.++..... ...+++++|+.++.
T Consensus 214 Dl~~~~~~~-------~~~~~~~~~~-~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 214 DLMDKGTDA-------VEILEGRSFK-LKYPWVGVVNRSQA 246 (360)
T ss_dssp GGCCTTCCS-------HHHHTTSSSC-CSSCCEEECCCCHH
T ss_pred ccCCCcccH-------HHHHcCcccc-ccCCeEEEEECChH
Confidence 998652211 1112222111 25688999998764
No 202
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=3.7e-11 Score=87.70 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=50.5
Q ss_pred eeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCceeeC
Q psy8869 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 593 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~l~~~ 593 (593)
..|.+||.|+|++|||+|++|+|.+++.. +++|.+.+||+.++++++.+||+|.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~~tpvel~~~qv~K~ 59 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDLKDMLEFPAQELRKY 59 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSCCSCEEEETTTEEEC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCCCceEEEcHHHEEEC
Confidence 46899999999999999999999999964 8999999999999999999999974
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.13 E-value=3.4e-11 Score=133.06 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=63.1
Q ss_pred CCeEEEEEecCChhh-------------hHHHHHHhh-hcCCEEEEEEECCCCCChhhH-HHHHHHHHcCCCeEEEEEee
Q psy8869 73 KARHYAHVDCPGHAD-------------YIKNMITGA-AQMDGAILVCSAADGPMPQTR-EHILLARQVGVPYIVVFLNK 137 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~-------------~~~~~~~~~-~~~d~~ilVvda~~g~~~qt~-e~l~~~~~l~ip~iiVvvNK 137 (593)
+..+++|+||||..+ +...+..++ ..+|.+++|+|++.+...+.. ..+..+...+.|.+ +|+||
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvI-lVlNK 226 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI-GVITK 226 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEE-EEEEC
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEE-EEEeC
Confidence 345789999999322 223333333 378999999999998776665 56666667788855 46899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHh--hcCCCCCCceEEEeccCccc
Q psy8869 138 ADMVDDEELLELVEIEIRELLN--KYEFPGNDIPIIKGSAKLAL 179 (593)
Q Consensus 138 ~Dl~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~vi~~Sa~~g~ 179 (593)
+|+.+...... .++. .+.+.....+++++||++|.
T Consensus 227 iDlv~~~~~~~-------~il~~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 227 LDLMDEGTDAR-------DVLENKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp TTSSCTTCCSH-------HHHTTCSSCCSSCEEECCCCCCEESS
T ss_pred cccCCcchhhH-------HHHHHHhhhhhccCCceEEecccccc
Confidence 99987532111 1111 11111123688999999984
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=2.7e-10 Score=115.84 Aligned_cols=174 Identities=20% Similarity=0.117 Sum_probs=93.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccC---------CChhh-----hhcCceEE-----------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQID---------AAPEE-----KARGITIN----------- 64 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d---------~~~~e-----~~~g~t~~----------- 64 (593)
.+...++++|.+|||||||++.|++.....++.-........ ..... .....-+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 455789999999999999999998765432211110000000 00000 00000000
Q ss_pred ---ee--eeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChh-hHHHHHHHHHcCCCeEEEEEeec
Q psy8869 65 ---TA--HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQ-TREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 65 ---~~--~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~q-t~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
+. ...++..+..+.|+||||..+-.. .....+|.+++|+|+..+...+ ....+ ..++.++ ++||+
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i-----~~~~~iv-vlNK~ 203 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI-----FELADMI-AVNKA 203 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH-----HHHCSEE-EEECC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH-----hccccEE-EEEch
Confidence 00 001234678899999999543211 1235899999999986542211 00000 1235455 46999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCC--CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
|+.+.........+++...+..+.- ..+..+++++||+++ .++++|++.|.+..
T Consensus 204 Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g----------~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 204 DDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG----------KGLDSLWSRIEDHR 259 (337)
T ss_dssp STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 9765333223333344444433321 012467999999998 68888888887654
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=1.2e-09 Score=113.81 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=78.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC--CeEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK--ARHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~~~iiDtpGh~~~ 88 (593)
-.++|+++|..|+|||||++.|++......+.... ..+ ....+......+.+... ...++++|+||..++
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~---~~~-----~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP---SHR-----IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC---C----------CCEEEEEECC------CEEEEEEECC-----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc---ccC-----CccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 34789999999999999999998653211100000 000 00111111111111212 236889999998765
Q ss_pred HH------HHH--------H-----------hhh--cCCEEEEEEECC-CCCChhhHHHHHHHHHcCCCeEEEEEeecCC
Q psy8869 89 IK------NMI--------T-----------GAA--QMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 89 ~~------~~~--------~-----------~~~--~~d~~ilVvda~-~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl 140 (593)
.. .+. . .+. .+++++++++++ ++......+.+..+.. +++ +|+|+||+|+
T Consensus 102 ~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dl 179 (418)
T 2qag_C 102 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 179 (418)
T ss_dssp ------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTTS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcccC
Confidence 32 110 0 111 234567777766 5777766666655543 666 5567899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 141 VDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
.+..+ ....+.++.+.+...+ ++++.+|+.++
T Consensus 180 l~~~e-v~~~k~~i~~~~~~~~-----i~~~~~sa~~~ 211 (418)
T 2qag_C 180 LTPEE-CQQFKKQIMKEIQEHK-----IKIYEFPETDD 211 (418)
T ss_dssp SCHHH-HHHHHHHHHHHHHHHT-----CCCCCCC----
T ss_pred ccHHH-HHHHHHHHHHHHHHcC-----CeEEeCCCCCC
Confidence 88643 3444556777776654 56888999876
No 206
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.04 E-value=3.7e-10 Score=115.12 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=83.7
Q ss_pred ceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-----------ChhhHHHHHHHHH----
Q psy8869 61 ITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ---- 125 (593)
Q Consensus 61 ~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-----------~~qt~e~l~~~~~---- 125 (593)
.|+.+....++.++..+.+|||+|+++|.+.+...+..++++|+|+|.++-. .......+..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444444556677888999999999999999999999999999999998721 2233333433332
Q ss_pred cCCCeEEEEEeecCCCCHH----------------HHHHHHHHHHHHHHhhcCC--CCCCceEEEeccCccccCCCCCCC
Q psy8869 126 VGVPYIVVFLNKADMVDDE----------------ELLELVEIEIRELLNKYEF--PGNDIPIIKGSAKLALEGDTGPLG 187 (593)
Q Consensus 126 l~ip~iiVvvNK~Dl~~~~----------------~~~~~~~~~~~~~l~~~~~--~~~~~~vi~~Sa~~g~~~~~~w~~ 187 (593)
.++| +|++.||+|+.... ...+....-+......+.. ....++++.+||+++
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--------- 328 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--------- 328 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH---------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc---------
Confidence 2566 56678999985221 0011222222222222221 124688999999998
Q ss_pred cCcHHHHHHHhhhh
Q psy8869 188 EQSILSLSKALDTY 201 (593)
Q Consensus 188 ~~~~~~ll~~l~~~ 201 (593)
.++.++++++...
T Consensus 329 -~nV~~vF~~v~~~ 341 (353)
T 1cip_A 329 -KNVQFVFDAVTDV 341 (353)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHH
Confidence 6788888877654
No 207
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.04 E-value=3.1e-09 Score=87.19 Aligned_cols=81 Identities=31% Similarity=0.418 Sum_probs=69.5
Q ss_pred CCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCCccCC
Q psy8869 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV 289 (593)
Q Consensus 210 ~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i 289 (593)
..|..+.|..++..-. |+++.|+|++|+|++|+.| |.+. ...+|+||+++++++++|.|||.|+++++|... ++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 4577888887555555 8899999999999999999 6431 468899999999999999999999999999876 89
Q ss_pred ccceEEe
Q psy8869 290 ERGQVLA 296 (593)
Q Consensus 290 ~~G~vl~ 296 (593)
++|++|-
T Consensus 106 ~~GdVLy 112 (116)
T 1xe1_A 106 KKGDVLE 112 (116)
T ss_dssp CTTCEEE
T ss_pred CCCcEEE
Confidence 9999985
No 208
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.00 E-value=1.5e-09 Score=108.71 Aligned_cols=152 Identities=19% Similarity=0.200 Sum_probs=74.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH-hhhhcCCccccccccCCChhhhhcCceEEeeeeEEee--CCeEEEEEecCCh--
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV-LSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET--KARHYAHVDCPGH-- 85 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~-~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~~~iiDtpGh-- 85 (593)
-.++|+++|+.|+|||||+++|.+. .... .+ .. .+.. ....++......+.++. ....+++|||||.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~-~g-i~----~~g~--~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPE-RV-IS----GAAE--KIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCC-CC-cc----cCCc--ccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 4579999999999999999998754 2111 11 00 0000 00001111111111222 2346889999997
Q ss_pred -----hhhH---H-------HHHHhhh----------cCCEEEEEEECCC-CCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 86 -----ADYI---K-------NMITGAA----------QMDGAILVCSAAD-GPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 86 -----~~~~---~-------~~~~~~~----------~~d~~ilVvda~~-g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
+.|. . ..+..++ .+++++++++++. +......+.+..+. .+++ +++++||.|
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~D 166 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKAD 166 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCC
Confidence 3331 1 1222221 2345666666554 46665554444332 2456 555689999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q psy8869 140 MVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178 (593)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa~~g 178 (593)
+.+..+. ...+.++.++++..+ ++++++||+++
T Consensus 167 l~~~~e~-~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 167 TLTLKER-ERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp GSCHHHH-HHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CCCHHHH-HHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 9875332 233446666666654 57999999986
No 209
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.00 E-value=3.5e-10 Score=115.69 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~-- 87 (593)
....+|+++|.+|+|||||+|+|++...... ...+.|.+.....+.+++..+.|+||||..+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~----------------~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a 133 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAA----------------EYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGA 133 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGG----------------GTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCccc----------------CCCCceeeeeeEEEEeCCcEEEEEeCCCccCCc
Confidence 3457999999999999999999996422111 1225677776677788899999999999421
Q ss_pred -----hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHH-HHHHHc-----CCCeEEEEEeecCCC
Q psy8869 88 -----YIKNMITGAAQMDGAILVCSAADGPMPQTREHI-LLARQV-----GVPYIVVFLNKADMV 141 (593)
Q Consensus 88 -----~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l-~~~~~l-----~ip~iiVvvNK~Dl~ 141 (593)
....++..++.+|++++|+|++++... .+.+ ..+... ..|..+ ++||+|.-
T Consensus 134 ~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i-~~nK~d~~ 195 (376)
T 4a9a_A 134 KDGRGRGKQVIAVARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDI-LIKKKEKG 195 (376)
T ss_dssp ----CHHHHHHHHHHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCE-EEEECSSS
T ss_pred hhhhHHHHHHHHHHHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhh-hhhHhhhh
Confidence 235566777899999999999864311 1111 122222 345554 57999963
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=1.6e-09 Score=110.25 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=53.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-----------------e
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-----------------R 75 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~ 75 (593)
++|+++|.+|+|||||+++|++....... ..+.|++.....+..++ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~----------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN----------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 68999999999999999999964311110 01222222221222222 4
Q ss_pred EEEEEecCChhhhHH-------HHHHhhhcCCEEEEEEECCC
Q psy8869 76 HYAHVDCPGHADYIK-------NMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 76 ~~~iiDtpGh~~~~~-------~~~~~~~~~d~~ilVvda~~ 110 (593)
.+.||||||..++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 689999999877642 23445679999999999986
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.94 E-value=2.5e-09 Score=113.68 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-------hhhhcCceEEeeee-------------E
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-------EEKARGITINTAHI-------------E 69 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-------~e~~~g~t~~~~~~-------------~ 69 (593)
++..+|+++|++|+||||++++|.......+...........+.. .....++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999776554322211111011110 11222343222100 0
Q ss_pred EeeCCeEEEEEecCChh----hhHHHHHHh--hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 70 YETKARHYAHVDCPGHA----DYIKNMITG--AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 70 ~~~~~~~~~iiDtpGh~----~~~~~~~~~--~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
+...++.+.||||||.. .+...+... +..+|.+++|+||..+.. ....+..... .+|..+|++||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCccccc
Confidence 12267789999999964 333333222 237899999999998753 2233332222 15532445799998753
No 212
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.88 E-value=1e-08 Score=103.32 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=59.1
Q ss_pred cCceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCC-----------CCChhhHHHHHHHHH--
Q psy8869 59 RGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-----------GPMPQTREHILLARQ-- 125 (593)
Q Consensus 59 ~g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~-----------g~~~qt~e~l~~~~~-- 125 (593)
+..|+......++.++..+.+|||+|+++|.+.+...+..++++|+|+|.++ .........+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3345555556677788899999999999999999999999999999999972 111223333333322
Q ss_pred --cCCCeEEEEEeecCCCC
Q psy8869 126 --VGVPYIVVFLNKADMVD 142 (593)
Q Consensus 126 --l~ip~iiVvvNK~Dl~~ 142 (593)
.++| ++++.||+|+..
T Consensus 225 ~~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSE-EEEEEECHHHHH
T ss_pred ccCCCe-EEEEEECchhhh
Confidence 2566 556689999864
No 213
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.87 E-value=1.2e-08 Score=104.27 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=53.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeee-------eEEe-------eCCeEEE
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAH-------IEYE-------TKARHYA 78 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-------~~~~-------~~~~~~~ 78 (593)
++|+++|.+|+|||||+++|++.........+. ..+...|.. .... ..+. .....+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~--------Ti~pn~g~~-~v~~~~l~~~~~~~~~~~~~~~~~~~~i~ 72 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFA--------TIDKNVGVV-PLEDERLYALQRTFAKGERVPPVVPTHVE 72 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG--------GGSTTEEEE-ECCCHHHHHHHHHHCBTTBCCCEECCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCc--------eeccceeeE-ecChHHHHHHHHHhcccccccccCCceEE
Confidence 579999999999999999999763211110000 000000100 0000 0000 1234689
Q ss_pred EEecCChhhh-------HHHHHHhhhcCCEEEEEEECCC
Q psy8869 79 HVDCPGHADY-------IKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 79 iiDtpGh~~~-------~~~~~~~~~~~d~~ilVvda~~ 110 (593)
||||||..++ .......++.+|++++|+|+++
T Consensus 73 lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 73 FVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred EEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 9999997654 2445566789999999999986
No 214
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.84 E-value=1.1e-08 Score=102.57 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=81.5
Q ss_pred CceEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECC-------CCCC----hhhHHHHHHHHH---
Q psy8869 60 GITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAA-------DGPM----PQTREHILLARQ--- 125 (593)
Q Consensus 60 g~t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~-------~g~~----~qt~e~l~~~~~--- 125 (593)
..|+......++.++..+.+|||+|+++|.+.+...+..++++|+|+|.+ +... ......+..+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34444555667778889999999999999999999999999999999876 2111 223333333322
Q ss_pred -cCCCeEEEEEeecCCCCHH-----------------HHHHHHHHHHHHHHhhcC-CCCCCceEEEeccCccccCCCCCC
Q psy8869 126 -VGVPYIVVFLNKADMVDDE-----------------ELLELVEIEIRELLNKYE-FPGNDIPIIKGSAKLALEGDTGPL 186 (593)
Q Consensus 126 -l~ip~iiVvvNK~Dl~~~~-----------------~~~~~~~~~~~~~l~~~~-~~~~~~~vi~~Sa~~g~~~~~~w~ 186 (593)
.++| ++++.||+|+.+.. ...+....-+......+. -....+.+..+||+++
T Consensus 232 ~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~-------- 302 (327)
T 3ohm_A 232 FQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT-------- 302 (327)
T ss_dssp GTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH--------
T ss_pred cCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC--------
Confidence 2456 55668999975321 011222222222222222 1223577889999997
Q ss_pred CcCcHHHHHHHhhhh
Q psy8869 187 GEQSILSLSKALDTY 201 (593)
Q Consensus 187 ~~~~~~~ll~~l~~~ 201 (593)
.++..+++.+...
T Consensus 303 --~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 303 --ENIRFVFAAVKDT 315 (327)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 5777777776543
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.81 E-value=1.1e-08 Score=97.73 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=89.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccc---cCCChhhhh--cCceEEee-ee------------EEe
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQ---IDAAPEEKA--RGITINTA-HI------------EYE 71 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~---~d~~~~e~~--~g~t~~~~-~~------------~~~ 71 (593)
++..+|+++|+.|+|||||+++|+................ .|....+.. ..+.++.. .. .+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 3568999999999999999999997643221100000000 000000000 00111100 00 001
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHH-HHHHH
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEE-LLELV 150 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~-~~~~~ 150 (593)
..+..+.++|++|.-... .+.-...+..+.|+|+..+...... ....++.|.++ ++||+|+.+... ..+
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~ii-v~NK~Dl~~~~~~~~~-- 185 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLI-VINKIDLADAVGADIK-- 185 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEE-EEECGGGHHHHTCCHH--
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEE-EEeccccCchhHHHHH--
Confidence 123368899999941110 0111245778889997543322111 11224678665 579999864311 112
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 151 EIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++.+.++.++ ...+++++||++| .++++++++|.+.+
T Consensus 186 --~~~~~~~~~~---~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 186 --KMENDAKRIN---PDAEVVLLSLKTM----------EGFDKVLEFIEKSV 222 (226)
T ss_dssp --HHHHHHHHHC---TTSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --HHHHHHHHhC---CCCeEEEEEecCC----------CCHHHHHHHHHHHH
Confidence 3333444332 2478999999998 68999999887643
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.70 E-value=1.3e-07 Score=92.77 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=80.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh----
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD---- 87 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~---- 87 (593)
.++++++|+.|||||||++.|++......+ ...... .+.......++++..... ..-...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G-~i~~~g-~~i~~~~~~~~i~~v~q~---~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKA-SSWNRE-EKIPKTVEIKAIGHVIEE---GGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCC-ccccCC-cccCcceeeeeeEEEeec---CCCcCCceEEechhhhhhccc
Confidence 478999999999999999999976533221 110000 000000000111110000 01123578999999321
Q ss_pred ---------hH-----HHHHHh----------hhcCCEEEEEEECC-CCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 88 ---------YI-----KNMITG----------AAQMDGAILVCSAA-DGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 88 ---------~~-----~~~~~~----------~~~~d~~ilVvda~-~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
|. ...... +..++++++++|.. +|..+...+.+..+... ++ +|+++||+|...
T Consensus 77 ~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt 154 (270)
T 3sop_A 77 ENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTMT 154 (270)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccCC
Confidence 11 111111 12358899999965 78888888888777766 55 666789999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q psy8869 143 DEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~ 163 (593)
.++. +..+..+.+.++..+.
T Consensus 155 ~~e~-~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 155 LEEK-SEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHH-HHHHHHHHHHHHHTTC
T ss_pred HHHH-HHHHHHHHHHHHHcCc
Confidence 7543 4455567766666554
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=8.1e-08 Score=99.44 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC--eEEEEEecCChhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA--RHYAHVDCPGHADY 88 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~~~iiDtpGh~~~ 88 (593)
..++++++|..|+|||||++.|++.... +.. . .....+.+.....+.+.... ..++++|+||....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~---g~~-----~----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFE---GEP-----A----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcccc---CCc-----C----CCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 4467999999999999999999865210 000 0 00011223222122222222 26789999984321
Q ss_pred -------------HHH----HHHhh---h-------cC--C-EEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeec
Q psy8869 89 -------------IKN----MITGA---A-------QM--D-GAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKA 138 (593)
Q Consensus 89 -------------~~~----~~~~~---~-------~~--d-~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~ 138 (593)
+.. .+... . .+ | ++++++|+.++......+.+..+. .++| +|+++||+
T Consensus 109 ~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~Kt 186 (427)
T 2qag_B 109 INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKA 186 (427)
T ss_dssp CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcch
Confidence 111 11111 1 11 2 466778888888777766655554 4566 56678999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q psy8869 139 DMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSA 175 (593)
Q Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~Sa 175 (593)
|..+.++. ..+...+.+.++.. .++++.+|.
T Consensus 187 D~Lt~~E~-~~l~~~I~~~L~~~-----gi~I~~is~ 217 (427)
T 2qag_B 187 DAISKSEL-TKFKIKITSELVSN-----GVQIYQFPT 217 (427)
T ss_dssp GGSCHHHH-HHHHHHHHHHHBTT-----BCCCCCCC-
T ss_pred hccchHHH-HHHHHHHHHHHHHc-----CCcEEecCC
Confidence 99987543 44444555544432 467777775
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.55 E-value=1.7e-06 Score=89.63 Aligned_cols=167 Identities=17% Similarity=0.117 Sum_probs=91.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC-eEEEEEecCChhh---
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA-RHYAHVDCPGHAD--- 87 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~iiDtpGh~~--- 87 (593)
...++++|+.|||||||++.|++..... .+... .+..+..+ .+ +.+.... ..++++|+||...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~----~~g~~~t~-~~-------~v~q~~~~~~ltv~D~~g~~~~~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEE-EGAAK----TGVVEVTM-ER-------HPYKHPNIPNVVFWDLPGIGSTNF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCC----CCC----C-CC-------EEEECSSCTTEEEEECCCGGGSSC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcc-CceEE----ECCeecce-eE-------EeccccccCCeeehHhhcccchHH
Confidence 4589999999999999999999743211 11111 11110000 11 1122222 2588999999431
Q ss_pred hHHHHHH--hhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHH--------HHHHHHHHHHHHH
Q psy8869 88 YIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDE--------ELLELVEIEIREL 157 (593)
Q Consensus 88 ~~~~~~~--~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~--------~~~~~~~~~~~~~ 157 (593)
-....+. ++...|..++ +|... .+.|....+..+...+.|.+ +++||.|+.--+ ...+.+...++++
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~-lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFY-FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEE-EEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeE-EEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 1222222 3344466555 77754 34666655666666787754 568999964100 0112223333443
Q ss_pred H----hhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCCC
Q psy8869 158 L----NKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPT 204 (593)
Q Consensus 158 l----~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~~ 204 (593)
. +..+.. ...+|++|+.... +.++++|.+.+...+|.
T Consensus 213 ~~~~l~~~g~~--~~~iiliSsh~l~--------~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 213 CVNTFRENGIA--EPPIFLLSNKNVC--------HYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHTTCS--SCCEEECCTTCTT--------STTHHHHHHHHHHHSCG
T ss_pred HHHHHHhcCCC--CCcEEEEecCcCC--------ccCHHHHHHHHHHhCcc
Confidence 2 232221 2468999994320 14689999999888864
No 219
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.55 E-value=7.3e-08 Score=98.52 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=74.0
Q ss_pred eEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-----------ChhhHHHHHHHHH----c
Q psy8869 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-----------MPQTREHILLARQ----V 126 (593)
Q Consensus 62 t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-----------~~qt~e~l~~~~~----l 126 (593)
|+.+....+..++..+.+|||+|+++|.+.+...+..++++|+|+|.++-- .......+..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 333444556677889999999999999999999999999999999998721 1223333333332 2
Q ss_pred CCCeEEEEEeecCCCCHH-----------------HHHHHHHHHHHHHHhhc-CCC-CCCceEEEeccCccccCCCCCCC
Q psy8869 127 GVPYIVVFLNKADMVDDE-----------------ELLELVEIEIRELLNKY-EFP-GNDIPIIKGSAKLALEGDTGPLG 187 (593)
Q Consensus 127 ~ip~iiVvvNK~Dl~~~~-----------------~~~~~~~~~~~~~l~~~-~~~-~~~~~vi~~Sa~~g~~~~~~w~~ 187 (593)
++| +|++.||+|+.... ...+....-+...+..+ ... ...+.++++||+++
T Consensus 268 ~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~--------- 337 (362)
T 1zcb_A 268 NVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--------- 337 (362)
T ss_dssp TSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH---------
T ss_pred CCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc---------
Confidence 566 56678999985211 11122211111111111 111 23578999999998
Q ss_pred cCcHHHHHHHhhhh
Q psy8869 188 EQSILSLSKALDTY 201 (593)
Q Consensus 188 ~~~~~~ll~~l~~~ 201 (593)
.++.++++++...
T Consensus 338 -~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 338 -ENIRLVFRDVKDT 350 (362)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHH
Confidence 6788888776543
No 220
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=97.86 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeC----------------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK---------------- 73 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---------------- 73 (593)
+...+|+++|.+|+|||||+++|++...... ...+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~----------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAE----------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc----------------CCCccccCceeEEEEECCccceeeccccCcccc
Confidence 4567999999999999999999986532111 01123333222222211
Q ss_pred -CeEEEEEecCChhhhHH-------HHHHhhhcCCEEEEEEECCC
Q psy8869 74 -ARHYAHVDCPGHADYIK-------NMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 74 -~~~~~iiDtpGh~~~~~-------~~~~~~~~~d~~ilVvda~~ 110 (593)
...+.||||||..++.. .+...++.+|++++|+|+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23589999999877654 45667789999999999975
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.44 E-value=1.8e-06 Score=89.84 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=72.9
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---------hhhhcCceEEeeee-------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---------EEKARGITINTAHI------------- 68 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~------------- 68 (593)
+...|+++|..|+||||++..|.......+....... .|... .....|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~--~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC--SDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE--CCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe--CCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 4678999999999999999999977665443221111 12211 11122333222100
Q ss_pred EEeeCCeEEEEEecCChh----hhHHHH--HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 69 EYETKARHYAHVDCPGHA----DYIKNM--ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 69 ~~~~~~~~~~iiDtpGh~----~~~~~~--~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.+...++.+.|+||||.. .....+ +..+..+|.++||+||..|. .......... -.++...|++||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~-~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFK-EATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHH-HSCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHH-hhCCCeEEEEECCCCcc
Confidence 111245789999999932 222222 12334689999999998752 2222222222 13444445689999876
Q ss_pred H
Q psy8869 143 D 143 (593)
Q Consensus 143 ~ 143 (593)
.
T Consensus 254 ~ 254 (443)
T 3dm5_A 254 K 254 (443)
T ss_dssp S
T ss_pred c
Confidence 4
No 222
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.36 E-value=5.1e-07 Score=90.24 Aligned_cols=103 Identities=24% Similarity=0.244 Sum_probs=73.0
Q ss_pred EEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCC-C-hhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHH
Q psy8869 76 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-M-PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIE 153 (593)
Q Consensus 76 ~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~-~-~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~ 153 (593)
.+.+||+ |++|...+..+++.+|++|+|+|+++.. . ......+..+...++|.++ ++||+|+.+.... .+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piil-v~NK~DL~~~~~v-----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVM-VINKMDLYDEDDL-----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEE-EECCGGGCCHHHH-----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEE-EEeHHHcCCchhH-----HH
Confidence 6889999 8888777777888999999999999753 2 3333445555566888554 5799999875321 23
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhh
Q psy8869 154 IRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALD 199 (593)
Q Consensus 154 ~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~ 199 (593)
..++++.+.. . .+++++||++| .+++++++.+.
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg----------~gv~~lf~~l~ 168 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTG----------MGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTC----------TTHHHHHHHHS
T ss_pred HHHHHHHHhh--h-CcEEEEECCCC----------cCHHHHHHHhc
Confidence 3444444331 1 67999999998 67888887653
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.33 E-value=2.8e-06 Score=88.36 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=71.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh---------hhhcCceEEeeee-------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---------EKARGITINTAHI------------- 68 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~------------- 68 (593)
+...|+++|+.|+||||++..|.......+....... .|.... ....|+.......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~--~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA--ADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE--ECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--cCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 4578999999999999999999877655433221111 111110 0112332221100
Q ss_pred EEeeCCeEEEEEecCChhh------hHHHHHH--hhhcCCEEEEEEECCCCCChhhHHHHHHHH-HcCCCeEEEEEeecC
Q psy8869 69 EYETKARHYAHVDCPGHAD------YIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKAD 139 (593)
Q Consensus 69 ~~~~~~~~~~iiDtpGh~~------~~~~~~~--~~~~~d~~ilVvda~~g~~~qt~e~l~~~~-~l~ip~iiVvvNK~D 139 (593)
.+...++.+.|+||||... +...+.. ....+|.++||+|+..|.. ....+.... .+++ ..|++||+|
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~--~gVIlTKlD 249 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPI--GSVIITKMD 249 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSS--EEEEEECGG
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCC--cEEEEeccc
Confidence 1112467899999999544 3333322 2236799999999987522 222222222 3333 344579999
Q ss_pred CCCH
Q psy8869 140 MVDD 143 (593)
Q Consensus 140 l~~~ 143 (593)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 7753
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=2.4e-06 Score=89.33 Aligned_cols=131 Identities=19% Similarity=0.134 Sum_probs=72.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCcccccc------ccCCChhh-hhcCceEEeee--------e---EE-
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYD------QIDAAPEE-KARGITINTAH--------I---EY- 70 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~------~~d~~~~e-~~~g~t~~~~~--------~---~~- 70 (593)
++...|+++|.+|+||||+++.|.......+........ ..+....- ...|+.+.... . .+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 345689999999999999999999876554322211100 01111110 11122111100 0 00
Q ss_pred eeCCeEEEEEecCChhh----hHHHHHH--hhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCC-CeEEEEEeecCCCCH
Q psy8869 71 ETKARHYAHVDCPGHAD----YIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLARQVGV-PYIVVFLNKADMVDD 143 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~----~~~~~~~--~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~i-p~iiVvvNK~Dl~~~ 143 (593)
...++.+.|+||||... +...+.. .+..+|.+++|+||..|. .....+.. ...++ +...+++||+|....
T Consensus 177 ~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp TTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSCST
T ss_pred HhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCccc
Confidence 12567899999999543 3333322 223689999999998763 22222222 12246 645667899998653
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.31 E-value=5e-08 Score=100.36 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=67.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh-----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~----- 87 (593)
.+|+++|.+|+|||||+|+|++........ .......|+|.+.....+. ..+.++||||..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~----------~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~ 229 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNV----------ITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMA 229 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCC----------CEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGG
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccc----------eeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHH
Confidence 579999999999999999999763221110 0011123555554443332 2378999999321
Q ss_pred -h-HHHHHHhh---hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 88 -Y-IKNMITGA---AQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 88 -~-~~~~~~~~---~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
+ ....+..+ ...|.+++++++.+..+.-..+.+..+...++| +++++||+|....
T Consensus 230 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 230 HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 1 11112222 567999999999542111011112223344666 5667899998764
No 226
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.29 E-value=2.2e-06 Score=88.26 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=56.8
Q ss_pred eEEeeeeEEeeCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCC-----------CChhhHHHHHHHHH----c
Q psy8869 62 TINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADG-----------PMPQTREHILLARQ----V 126 (593)
Q Consensus 62 t~~~~~~~~~~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g-----------~~~qt~e~l~~~~~----l 126 (593)
|+.+....+..++..+.+|||+|+++|...+...+..++++|+|+|.++- .+......+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 33344445666788899999999999999999999999999999999861 11223333333332 2
Q ss_pred CCCeEEEEEeecCCCC
Q psy8869 127 GVPYIVVFLNKADMVD 142 (593)
Q Consensus 127 ~ip~iiVvvNK~Dl~~ 142 (593)
++| +|++.||+|+..
T Consensus 284 ~~p-iiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TIS-VILFLNKQDLLA 298 (402)
T ss_dssp SCC-EEEEEECHHHHH
T ss_pred CCe-EEEEEEChhhhh
Confidence 466 556689999753
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.27 E-value=2.2e-06 Score=85.23 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=73.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-h------hhhcCceEEeee-------------eEEe
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-E------EKARGITINTAH-------------IEYE 71 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-~------e~~~g~t~~~~~-------------~~~~ 71 (593)
...|+++|..|+||||++..|.......++........+.+.. . ....|+.+-... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998776544322111111111110 0 011233321110 0011
Q ss_pred eCCeEEEEEecCChhh--hHHHHH------HhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 72 TKARHYAHVDCPGHAD--YIKNMI------TGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~--~~~~~~------~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
..++.+.|+||||... ....+. ..+..+|.+++|+|+..+ .+..+.+..... .++...+++||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTT
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcc
Confidence 2567899999999655 322222 234578999999999864 233333333332 46645556899997643
No 228
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.26 E-value=9.4e-08 Score=98.24 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=64.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh-----
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD----- 87 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~----- 87 (593)
.+|+++|.+|+|||||+|+|++........ ........|.|.+.....+. . .+.++||||..+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~---------~~~~~~~~gtT~~~~~~~~~--~-~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETEN---------VITTSHFPGTTLDLIDIPLD--E-ESSLYDTPGIINHHQMA 228 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSS---------CCEEECCC----CEEEEESS--S-SCEEEECCCBCCTTSGG
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccc---------ceecCCCCCeecceEEEEec--C-CeEEEeCCCcCcHHHHH
Confidence 579999999999999999999764211000 00011123555544443332 2 278999999321
Q ss_pred -h-HHHHHHh---hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 88 -Y-IKNMITG---AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 88 -~-~~~~~~~---~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
+ ....+.. ....+..++++++......-....+..+...++| +++++||+|....
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHR 288 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCcccccc
Confidence 1 1222222 3467889999998542111111112223334666 5667899999865
No 229
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=2e-06 Score=88.53 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhh-hhcCCccccccccCCChhhhhcCceEEeeeeEEeeCC------------
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLS-KKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA------------ 74 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------ 74 (593)
+-.+..+|+++|++|+|||||+++|++... .... ..++|++.....+...+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~ 79 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------YPYATIDPEEAKVAVPDERFDWLCEAYKP 79 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------CSSCCCCTTEEEEEECCHHHHHHHHHHCC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------CCceeecceeeeeeeCCcchhhhhhhccc
Confidence 344567999999999999999999997422 1111 11222222222222222
Q ss_pred -----eEEEEEecCChhh-------hHHHHHHhhhcCCEEEEEEECCC
Q psy8869 75 -----RHYAHVDCPGHAD-------YIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 75 -----~~~~iiDtpGh~~-------~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
..+.++|+||... +...+...++.+|.++.|+|+.+
T Consensus 80 ~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999432 33455666789999999999975
No 230
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.18 E-value=2.1e-06 Score=87.31 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=47.4
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCC-------C----CChhhHHHHHHHHH----cCCCeEEEEEeec
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD-------G----PMPQTREHILLARQ----VGVPYIVVFLNKA 138 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~-------g----~~~qt~e~l~~~~~----l~ip~iiVvvNK~ 138 (593)
...+.+|||+|+++|...+...+..++++|+|+|.++ . .+......+..+.. .++| +|++.||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 4578899999999999999999999999999999871 1 11223333333332 2466 56678999
Q ss_pred CCC
Q psy8869 139 DMV 141 (593)
Q Consensus 139 Dl~ 141 (593)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 974
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.14 E-value=7.4e-06 Score=85.64 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=71.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhh-cCCccccccccCCC---hh------hhhcCceEEeee------------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKK-FGGEAKSYDQIDAA---PE------EKARGITINTAH------------ 67 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~d~~---~~------e~~~g~t~~~~~------------ 67 (593)
++...|+++|+.|+||||++..|...+... +....... .|.. .. ....|+.+-...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd--~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS--ADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE--CCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe--cCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 456789999999999999999999877665 43221111 1110 01 112233322110
Q ss_pred -eEEeeCCeEEEEEecCChhhhHHHHHH------hhhcCCEEEEEEECCCCCChhhHHHHHH-HHHcCCCeEEEEEeecC
Q psy8869 68 -IEYETKARHYAHVDCPGHADYIKNMIT------GAAQMDGAILVCSAADGPMPQTREHILL-ARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 68 -~~~~~~~~~~~iiDtpGh~~~~~~~~~------~~~~~d~~ilVvda~~g~~~qt~e~l~~-~~~l~ip~iiVvvNK~D 139 (593)
..+...++.+.||||||...+...+.. .+..+|.+++|+|+..+. .....+.. ...+++.. |++||+|
T Consensus 176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i~g--vVlnK~D 251 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPLTG--VVLTKVD 251 (433)
T ss_dssp HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCCCC--EEEECTT
T ss_pred HHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCCeE--EEEecCC
Confidence 011225678999999996443222221 234789999999998762 22222222 12344443 3579999
Q ss_pred CCC
Q psy8869 140 MVD 142 (593)
Q Consensus 140 l~~ 142 (593)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 754
No 232
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.03 E-value=1.4e-05 Score=73.70 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=63.3
Q ss_pred cCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHH----HH-H---cCCCeEEEEEeec-CCCCHHHHHHHHHH
Q psy8869 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILL----AR-Q---VGVPYIVVFLNKA-DMVDDEELLELVEI 152 (593)
Q Consensus 82 tpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~----~~-~---l~ip~iiVvvNK~-Dl~~~~~~~~~~~~ 152 (593)
..|+.++...|-.++..+|++|+|||+++......++-+.. +. . .++|.+|+ .||. |+..+- .. .
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVl-ANKqqDlp~Am-s~----~ 182 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVL-SCISQGDVKRM-PC----F 182 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEE-EEESSTTSCBC-CH----H
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEE-eCCCcCccCCC-CH----H
Confidence 34899999999999999999999999987533234443311 11 1 36786655 5995 676531 01 1
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++.+.|....+. ....+.+|||++| .|+.+-++||.+.+.
T Consensus 183 EI~e~L~L~~l~-R~W~Iq~csA~TG----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 183 YLAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHTTTTT
T ss_pred HHHHHcCCcCCC-CCEEEEEeECCCC----------cCHHHHHHHHHHHHH
Confidence 233333222222 4677999999998 799999999987654
No 233
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.95 E-value=2e-05 Score=77.60 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=62.8
Q ss_pred EEecCChh-hhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy8869 79 HVDCPGHA-DYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (593)
Q Consensus 79 iiDtpGh~-~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~ 157 (593)
+-+.|||. +..+.+...+..+|+++.|+||+++......+.-.++ .+.|.++ ++||+|+.+.+.. ....++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~il-VlNK~DL~~~~~~-----~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIM-LLNKADKADAAVT-----QQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEE-EEECGGGSCHHHH-----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEE-EEECcccCCHHHH-----HHHHHH
Confidence 44689987 6678888889999999999999986554322111111 3566554 6899999985321 122333
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++.. ..+++++||.++ .++.+|++.+.+.+
T Consensus 75 ~~~~-----g~~~i~iSA~~~----------~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FENQ-----GIRSLSINSVNG----------QGLNQIVPASKEIL 104 (282)
T ss_dssp HHTT-----TCCEEECCTTTC----------TTGGGHHHHHHHHH
T ss_pred HHhc-----CCcEEEEECCCc----------ccHHHHHHHHHHHH
Confidence 3332 357999999987 56777777666544
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.91 E-value=3.2e-05 Score=81.21 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=68.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh---------hhhcCceEEeeeeE------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---------EKARGITINTAHIE------------ 69 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~~------------ 69 (593)
+.-.|+++|..|||||||++.|.+.....+ +..... ..|.... ...+++.+-.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~-G~V~l~-g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQG-KSVMLA-AGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEE-CCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcC-CeEEEe-cCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 446799999999999999999987765432 221111 0122111 01233333221110
Q ss_pred -EeeCCeEEEEEecCChhhh----HHH---HHHhhh-----cCCEEEEEEECCCCCChhhHHHHH-HHHHcCCCeEEEEE
Q psy8869 70 -YETKARHYAHVDCPGHADY----IKN---MITGAA-----QMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVFL 135 (593)
Q Consensus 70 -~~~~~~~~~iiDtpGh~~~----~~~---~~~~~~-----~~d~~ilVvda~~g~~~qt~e~l~-~~~~l~ip~iiVvv 135 (593)
....++.+.|+||+|.... ... +...++ .++-++||+|++.|. .....+. +...+++..+ ++
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~itgv--Il 445 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLTGI--TL 445 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCSEE--EE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCCEE--EE
Confidence 0124567899999995322 211 111111 367899999998762 1222232 2335677743 46
Q ss_pred eecCCC
Q psy8869 136 NKADMV 141 (593)
Q Consensus 136 NK~Dl~ 141 (593)
||+|-.
T Consensus 446 TKLD~t 451 (503)
T 2yhs_A 446 TKLDGT 451 (503)
T ss_dssp ECGGGC
T ss_pred EcCCCc
Confidence 999964
No 235
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.91 E-value=4e-06 Score=90.51 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeE--E-eeCCeEEEEEecCCh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE--Y-ETKARHYAHVDCPGH 85 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~-~~~~~~~~iiDtpGh 85 (593)
..+..+|+++|.+|+|||||+|+|++..... . .... .++.|.....+. + ...+..+.|+||||.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--------~-~~~t----t~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--------S-LGST----VQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--------C-CCCS----SSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--------c-cCCC----CCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 3567899999999999999999998642100 0 0000 011221111111 1 235678999999994
Q ss_pred hhhH------HHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHc
Q psy8869 86 ADYI------KNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQV 126 (593)
Q Consensus 86 ~~~~------~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l 126 (593)
.+.. ...+..+. .++ ++|+|+..++..+..+++.++..+
T Consensus 102 ~~~~~~~~~~~~~~fala~llss--~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 102 GDVEKGDNQNDSWIFALAVLLSS--TFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp CCGGGCCCTTHHHHHHHHHHHCS--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred CcccccchhHHHHHHHHHHHhcC--eEEEECCCCccHHHHHHHHHHHHH
Confidence 3221 11111112 233 678888888888877777665554
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.88 E-value=3.9e-05 Score=77.17 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCC-Chhh------hhcCceEEeeeeEE------------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDA-APEE------KARGITINTAHIEY------------ 70 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~-~~~e------~~~g~t~~~~~~~~------------ 70 (593)
++.-.++++|..|||||||++.|.+.....++.-......+.+ ...+ ...|+.+-......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 4557899999999999999999998765443221111111111 1111 12233222111000
Q ss_pred -eeCCeEEEEEecCChh----hhHHHHHH--hhhcCCEEEEEEECCCCCChhhHHHHHHHH-HcCCCeEEEEEeecCCCC
Q psy8869 71 -ETKARHYAHVDCPGHA----DYIKNMIT--GAAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 71 -~~~~~~~~iiDtpGh~----~~~~~~~~--~~~~~d~~ilVvda~~g~~~qt~e~l~~~~-~l~ip~iiVvvNK~Dl~~ 142 (593)
...++.+.++||+|.. .+...+.. .+-.+|-.++++|+..+. +..+.+.... .+++. .+ ++||+|...
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it-~i-ilTKlD~~a 282 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID-GI-ILTKLDADA 282 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC-EE-EEECGGGCS
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC-EE-EEeCcCCcc
Confidence 1124567889999953 23333221 123689999999998762 3344443333 45666 33 469999653
No 237
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=97.87 E-value=5.5e-06 Score=67.80 Aligned_cols=87 Identities=13% Similarity=0.268 Sum_probs=63.2
Q ss_pred ccceeEEEeeccCcHHHHHHHHHHHHHhc---CCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEEeeChhhhh
Q psy8869 417 NKKRWYVIHSYSGMEKNVQRKLIERINKL---GMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEMEMTDESWH 493 (593)
Q Consensus 417 ~~~~Wyvl~t~~~~E~~~~~~L~~~~~~~---~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~ 493 (593)
+++.-|+++|++|+|+.++..|.++.... +..-..+.+|.|-. +.|||||..........
T Consensus 4 ~Dp~i~~Vk~~~G~Er~va~~L~~k~~~~~~~~~~l~I~Si~~~~~-----------------lkGyIyVEA~~~~~V~~ 66 (106)
T 3h7h_B 4 MDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEH-----------------VKGYIYVEAYKQTHVKQ 66 (106)
T ss_dssp CCCEEEEEECCTTCHHHHHHHHHHHHHHHTTSSSCCCCCEEEECTT-----------------CCSEEEEEESSHHHHHH
T ss_pred CCCCEEEEEECCCcHHHHHHHHHHHHHHhhccCCCcceEEEEecCC-----------------CceEEEEEeCCHHHHHH
Confidence 35678999999999999999998777632 11223556666654 89999999997777778
Q ss_pred hhhccCCeeE-eccCCCCCceecCHHHHHHHHH
Q psy8869 494 LVKNTKKVTG-FIGGKSNRPTPISSKEIEEILK 525 (593)
Q Consensus 494 ~i~~~~~v~~-~l~~~~~~p~~i~~~~~~~l~~ 525 (593)
.+..++++++ ... ...+|-+||..+.+
T Consensus 67 ai~gi~~v~~~~~~-----~~lVpi~Em~~~L~ 94 (106)
T 3h7h_B 67 AIEGVGNLRLGYWN-----QQMVPIKEMTDVLK 94 (106)
T ss_dssp HHTTCGGGGGGSSC-----CEECCGGGTTGGGC
T ss_pred HHhcccceeccccc-----ceEEcHHHHHHhcC
Confidence 8887777765 332 23477788877655
No 238
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.84 E-value=1.5e-05 Score=63.56 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=69.9
Q ss_pred EEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCc-eEEEEEEEEecceecceeeecceEEEEeccCCccCCccce
Q psy8869 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDVERGQ 293 (593)
Q Consensus 215 ~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~~i~~G~ 293 (593)
..|.++|+++..|+++..+|.+|.++.+..+++...+.. ...++.|+.++...+.++.+|.-|++.|.+. ++++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 457788999999999999999999999999999864432 4678899999999999999999999999854 5899999
Q ss_pred EEe
Q psy8869 294 VLA 296 (593)
Q Consensus 294 vl~ 296 (593)
+|-
T Consensus 87 ~Ie 89 (99)
T 1d1n_A 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.82 E-value=5.2e-05 Score=76.03 Aligned_cols=128 Identities=15% Similarity=0.058 Sum_probs=68.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh-------hh-----hcCceEE-eee---------
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE-------EK-----ARGITIN-TAH--------- 67 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~-------e~-----~~g~t~~-~~~--------- 67 (593)
++.-.|+++|..|+||||++..|.......++.-... ..|.... +. ..++.+- ...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli--d~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~ 180 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA--AADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVV 180 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHH
Confidence 4456799999999999999999987765543221111 1122110 11 1233322 100
Q ss_pred -eEE---eeCCeEEEEEecCChhhhHHHHHHh-------h-----hcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeE
Q psy8869 68 -IEY---ETKARHYAHVDCPGHADYIKNMITG-------A-----AQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131 (593)
Q Consensus 68 -~~~---~~~~~~~~iiDtpGh~~~~~~~~~~-------~-----~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~i 131 (593)
..+ ...++.+.||||||........+.. + ..+|.+++|+|+..+ ..+.+.+.... ...+..
T Consensus 181 ~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~ 257 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVS 257 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCC
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCc
Confidence 000 1256789999999955432222111 1 247999999999864 22333322211 123332
Q ss_pred EEEEeecCCCC
Q psy8869 132 VVFLNKADMVD 142 (593)
Q Consensus 132 iVvvNK~Dl~~ 142 (593)
=+++||+|...
T Consensus 258 GvVltk~d~~~ 268 (320)
T 1zu4_A 258 GIILTKMDSTS 268 (320)
T ss_dssp EEEEECGGGCS
T ss_pred EEEEeCCCCCC
Confidence 23579999654
No 240
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.80 E-value=5e-05 Score=77.83 Aligned_cols=104 Identities=14% Similarity=0.044 Sum_probs=66.8
Q ss_pred ChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy8869 84 GHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEF 163 (593)
Q Consensus 84 Gh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (593)
..++|.+.+......+|.+++|+|+++.. ......+... ..+.|. ++++||+|+.+.+...+.+...+....+..++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~-~~~~p~-ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~ 131 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRF-VGNNKV-LLVGNKADLIPKSVKHDKVKHWMRYSAKQLGL 131 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHH-SSSSCE-EEEEECGGGSCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHH-hCCCcE-EEEEEChhcCCcccCHHHHHHHHHHHHHHcCC
Confidence 45788887777777889999999998721 1110111111 126674 45689999976532223333344555666665
Q ss_pred CCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 164 PGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 164 ~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
. ..+++.+||++| .++++|++.|.+..
T Consensus 132 ~--~~~v~~iSA~~g----------~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 K--PEDVFLISAAKG----------QGIAELADAIEYYR 158 (368)
T ss_dssp C--CSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred C--cccEEEEeCCCC----------cCHHHHHhhhhhhc
Confidence 2 247999999998 68999999987653
No 241
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.79 E-value=3.6e-05 Score=78.95 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=67.6
Q ss_pred EEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy8869 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIREL 157 (593)
Q Consensus 78 ~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~ 157 (593)
.-+++| +++|.+........++.+++|+|+++.......+....+ .+.| +++++||+|+.+.+...+.+...+.+.
T Consensus 52 ~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 52 QDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp --------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred cCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 344554 788888877777899999999999974422111111111 2566 455689999986532223333445555
Q ss_pred HhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhC
Q psy8869 158 LNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYI 202 (593)
Q Consensus 158 l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l 202 (593)
++..++. ..+++++||++| .++.+|++.+.+..
T Consensus 128 ~~~~g~~--~~~v~~iSA~~g----------~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLC--PVDVCLVSAAKG----------IGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCC--CSEEEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHcCCC--cccEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 6666652 247999999998 68999999987654
No 242
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.77 E-value=2.1e-05 Score=77.44 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=34.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCCh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh 85 (593)
+..++|+++|.+|+|||||+|+|++.... ......|.|.+.....+ +..+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~---------------~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA---------------KTGDRPGITTSQQWVKV---GKELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------------------CCEEE---TTTEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee---------------ecCCCCCeeeeeEEEEe---CCCEEEEECcCc
Confidence 45689999999999999999999853210 11112355555443322 346899999994
No 243
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.75 E-value=7.4e-05 Score=61.70 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=69.8
Q ss_pred eEEEEEEEEeCCCcE---EEEEEEEeeeEecCCEEEEeecCCc-eEEEEEEEEecceecceeeecceEEEEeccCCcc-C
Q psy8869 214 LLPVEDVFSISGRGT---VVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKRE-D 288 (593)
Q Consensus 214 ~~~i~~~~~~~~~G~---v~~G~v~~G~l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~~~-~ 288 (593)
...|.++|+++..|+ ++..+|.+|.++.+..+++...+.. ...++.|+.++...+.++.+|.-|++.|.+ .+ +
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCCC
Confidence 467889999998888 9999999999999999999864422 456788999999999999999999999974 46 8
Q ss_pred CccceEEe
Q psy8869 289 VERGQVLA 296 (593)
Q Consensus 289 i~~G~vl~ 296 (593)
++.||+|-
T Consensus 90 ik~GDiIE 97 (120)
T 2crv_A 90 FKPGDQVI 97 (120)
T ss_dssp CCTTEEEE
T ss_pred CCCCCEEE
Confidence 99999995
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.72 E-value=9.9e-05 Score=73.50 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=62.3
Q ss_pred hhhhHHHHHHhhhcCCEEEEEEECCCCC-Ch-hhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcC
Q psy8869 85 HADYIKNMITGAAQMDGAILVCSAADGP-MP-QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYE 162 (593)
Q Consensus 85 h~~~~~~~~~~~~~~d~~ilVvda~~g~-~~-qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (593)
+++|.......++++|.+++|+|+++.. .. .....+..+...++|.++ ++||+|+.+..+. +. ..+..++.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~il-V~NK~DL~~~~~v-~~-~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVI-VFNKIDLLNEEEK-KE-LERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEE-EECCGGGCCHHHH-HH-HHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEE-EEEcccCCCcccc-HH-HHHHHHHHHHCC
Confidence 4444333334678999999999999753 22 234455666677888665 5799999876321 11 123344444443
Q ss_pred CCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHh
Q psy8869 163 FPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKAL 198 (593)
Q Consensus 163 ~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l 198 (593)
.+++++||++| .++++|++.+
T Consensus 143 -----~~~~~~SA~~g----------~gi~~L~~~l 163 (302)
T 2yv5_A 143 -----YDVLKVSAKTG----------EGIDELVDYL 163 (302)
T ss_dssp -----CEEEECCTTTC----------TTHHHHHHHT
T ss_pred -----CeEEEEECCCC----------CCHHHHHhhc
Confidence 57999999998 5677776654
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.66 E-value=0.00016 Score=71.80 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=67.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh--hh-----hhcCceEEeeeeE----------E---
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP--EE-----KARGITINTAHIE----------Y--- 70 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~--~e-----~~~g~t~~~~~~~----------~--- 70 (593)
+.-.|+++|+.|||||||++.|.+.....++.-......+.+.. ++ ...++.+-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998776543221111111111111 00 1123322111000 0
Q ss_pred eeCCeEEEEEecCChhhh----HHHHH---Hh-----hhcCCEEEEEEECCCCCChhhHHHHH-HHHHcCCCeEEEEEee
Q psy8869 71 ETKARHYAHVDCPGHADY----IKNMI---TG-----AAQMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVFLNK 137 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~~----~~~~~---~~-----~~~~d~~ilVvda~~g~~~qt~e~l~-~~~~l~ip~iiVvvNK 137 (593)
...+..+.++||+|.... ..... .. ...++.+++++|+..+.. ..+.+. +....++. +| ++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t-~i-ivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT-GV-IVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS-EE-EEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc-EE-EEEC
Confidence 112345779999994322 21111 01 124788999999987642 233333 33345776 33 4699
Q ss_pred cCCCC
Q psy8869 138 ADMVD 142 (593)
Q Consensus 138 ~Dl~~ 142 (593)
.|...
T Consensus 257 ~d~~a 261 (304)
T 1rj9_A 257 LDGTA 261 (304)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 99654
No 246
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.62 E-value=9.6e-05 Score=71.54 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=68.0
Q ss_pred cCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHH----HHH---HH-cCCCeEEEEEee-cCCCCHHHHHHHHHH
Q psy8869 82 CPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHI----LLA---RQ-VGVPYIVVFLNK-ADMVDDEELLELVEI 152 (593)
Q Consensus 82 tpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l----~~~---~~-l~ip~iiVvvNK-~Dl~~~~~~~~~~~~ 152 (593)
..|+.++...+-.++..+|++|+|||+++......++-+ .++ .. .++|.+|+ .|| .|+..+-. . .
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVf-ANKkQDlp~Ams-~----~ 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVL-SCISQGDVKRMP-C----F 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEE-EEESSTTSCBCC-H----H
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEE-eCCcccccCCCC-H----H
Confidence 468899999999999999999999999874322233322 112 11 47886665 597 58865411 1 1
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhhCC
Q psy8869 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIP 203 (593)
Q Consensus 153 ~~~~~l~~~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~l~ 203 (593)
++.+.|....+. ....+.++||.+| +|+.+-+++|.+.+.
T Consensus 268 EI~e~L~L~~l~-r~W~Iq~csA~tG----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 268 YLAHELHLNLLN-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC----------TTHHHHHHHHHHHSC
T ss_pred HHHHHcCCccCC-CcEEEEecccCCC----------cCHHHHHHHHHHHHH
Confidence 233333222222 4677999999998 799999999988764
No 247
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.61 E-value=0.00014 Score=72.22 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=67.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh---h------hhcCceEEeee-------e-----
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAH-------I----- 68 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~-------~----- 68 (593)
++.-.|+++|..|+||||++..|.......++.-.... .|.... | ...|+..-... .
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~--~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA--ADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--ECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc--cccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 34467999999999999999999877654432211111 111110 0 11233221100 0
Q ss_pred -EEeeCCeEEEEEecCChhhhHHHH-------HHhh-----hcCCEEEEEEECCCCCChhhHHHHH-HHHHcCCCeEEEE
Q psy8869 69 -EYETKARHYAHVDCPGHADYIKNM-------ITGA-----AQMDGAILVCSAADGPMPQTREHIL-LARQVGVPYIVVF 134 (593)
Q Consensus 69 -~~~~~~~~~~iiDtpGh~~~~~~~-------~~~~-----~~~d~~ilVvda~~g~~~qt~e~l~-~~~~l~ip~iiVv 134 (593)
.....++.+.|+||||........ ...+ ..+|.+++|+|+..+ ....+.+. +....++.-+ +
T Consensus 180 ~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gv--V 255 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGI--I 255 (306)
T ss_dssp HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEE--E
T ss_pred HHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEE--E
Confidence 001245679999999953222211 1111 247899999999743 11222222 2224555533 4
Q ss_pred EeecCCCC
Q psy8869 135 LNKADMVD 142 (593)
Q Consensus 135 vNK~Dl~~ 142 (593)
+||+|...
T Consensus 256 lTk~D~~~ 263 (306)
T 1vma_A 256 LTKLDGTA 263 (306)
T ss_dssp EECGGGCS
T ss_pred EeCCCCcc
Confidence 69999654
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.59 E-value=9.3e-05 Score=76.80 Aligned_cols=126 Identities=22% Similarity=0.177 Sum_probs=68.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh---hh------hhcCceEEeee-------e---E--
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP---EE------KARGITINTAH-------I---E-- 69 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~---~e------~~~g~t~~~~~-------~---~-- 69 (593)
+...|+++|..|+||||++..|.......++...... .|... ++ ...|+.+-... . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd--~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--ADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE--CCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee--ccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 4457888999999999999999877655432211111 11111 11 11233221110 0 0
Q ss_pred -EeeCCeEEEEEecCChhhh----HHHH--HHhhhcCCEEEEEEECCCCCChhhHHHHHHH-HHcCCCeEEEEEeecCCC
Q psy8869 70 -YETKARHYAHVDCPGHADY----IKNM--ITGAAQMDGAILVCSAADGPMPQTREHILLA-RQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 70 -~~~~~~~~~iiDtpGh~~~----~~~~--~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~-~~l~ip~iiVvvNK~Dl~ 141 (593)
+...++.+.|+||||.... ...+ +..+..+|.++||+|+..+ ......+... ..+++. -|++||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~--GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCC--EEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCce--EEEEeCcCCc
Confidence 1125678999999995332 2222 1223368999999999865 2222222221 233443 3457999965
Q ss_pred C
Q psy8869 142 D 142 (593)
Q Consensus 142 ~ 142 (593)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 3
No 249
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=97.58 E-value=8.9e-05 Score=74.38 Aligned_cols=50 Identities=28% Similarity=0.721 Sum_probs=46.2
Q ss_pred ceeEEEeeccCcHHHHHHHHHHHHHhcCCccceeEEEeeeEEEEEEecCc
Q psy8869 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQ 468 (593)
Q Consensus 419 ~~Wyvl~t~~~~E~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~~~~g~ 468 (593)
++||+++|++|.|.++.+.|++++...++++...++++|.+.+...++++
T Consensus 3 ~~WYvi~t~sg~E~kv~~~l~~~~~~~~~~~~~~~~~vp~e~~~~~~~~~ 52 (352)
T 2xhc_A 3 KKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLDATSPS 52 (352)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHCCCSSEEEEECCEEEEECCSSCS
T ss_pred cEEEEEEEecCcHHHHHHHHHHHHHhcchhhhccEEEeeeEEEEEEecCc
Confidence 48999999999999999999999999999999999999999888777666
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.51 E-value=0.0004 Score=64.58 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=72.1
Q ss_pred EEEEE-ecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh--h----hhcCceEEeee-e------EEeeCCeEEEE
Q psy8869 14 NVGTI-GHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE--E----KARGITINTAH-I------EYETKARHYAH 79 (593)
Q Consensus 14 ~I~i~-G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~--e----~~~g~t~~~~~-~------~~~~~~~~~~i 79 (593)
.|++. +.-|+||||+.-.|...+...+...... .+|.... . ...+..+-... . ..-.+.+.+.+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli--D~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVV--DTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE--ECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 46666 4577999999999987766544221111 1111100 0 00111110000 0 00013578999
Q ss_pred EecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC-----CCeEEEEEeecCCC
Q psy8869 80 VDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG-----VPYIVVFLNKADMV 141 (593)
Q Consensus 80 iDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~-----ip~iiVvvNK~Dl~ 141 (593)
+|+|+... ..+...+..+|.+++++.+.... ..+...+..+..++ ++. .+++|++|..
T Consensus 81 iD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 81 VDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp EECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred EECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 99998653 34445567899999999998876 77777777777654 454 5568999954
No 251
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.50 E-value=8.4e-05 Score=72.34 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=58.8
Q ss_pred cCChhhh-HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhh
Q psy8869 82 CPGHADY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNK 160 (593)
Q Consensus 82 tpGh~~~-~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (593)
.|||... .+.+...+..+|.++.|+||+++......+ +.++ +.|.++ ++||+|+++.+.. + ...++++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~~ii-vlNK~DL~~~~~~-~----~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKETII-LLNKVDIADEKTT-K----KWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSEEEE-EEECGGGSCHHHH-H----HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCCcEE-EEECccCCCHHHH-H----HHHHHHHH
Confidence 4898755 456777888999999999999865443211 1111 777555 5899999986321 1 22333443
Q ss_pred cCCCCCCceEEEeccCccccCCCCCCCcCcHHHHHHHhhhh
Q psy8869 161 YEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTY 201 (593)
Q Consensus 161 ~~~~~~~~~vi~~Sa~~g~~~~~~w~~~~~~~~ll~~l~~~ 201 (593)
.+ .++ ++||.++ .++.+|++.+...
T Consensus 74 ~g-----~~v-~iSa~~~----------~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QG-----KRV-ITTHKGE----------PRKVLLKKLSFDR 98 (262)
T ss_dssp TT-----CCE-EECCTTS----------CHHHHHHHHCCCT
T ss_pred cC-----CeE-EEECCCC----------cCHHHHHHHHHHh
Confidence 33 457 9999997 6888888877543
No 252
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.44 E-value=0.00054 Score=74.94 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.|+++|+.|||||||++.|++..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999998764
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.37 E-value=0.00017 Score=71.50 Aligned_cols=127 Identities=18% Similarity=0.069 Sum_probs=65.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhh-hcCCccccccccCCC---hhh------hhcCceEEeee----e--EE-eeC
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSK-KFGGEAKSYDQIDAA---PEE------KARGITINTAH----I--EY-ETK 73 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~-~~~~~~~~~~~~d~~---~~e------~~~g~t~~~~~----~--~~-~~~ 73 (593)
+.-.|+++|+.|+||||++..|...... .|..-.... .|.. ..| ...|+...... . .+ ...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~--~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT--TDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE--CCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe--cCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhc
Confidence 4458999999999999999999877653 331111100 1111 000 00111110000 0 00 124
Q ss_pred CeEEEEEecCChhhh----HHHHHHhhh--cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADY----IKNMITGAA--QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~----~~~~~~~~~--~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
+..+.|+||||.... +..+...+. .+|..++|+|++.+.. ...+.......+++.. +++||+|...
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g--iVltk~D~~~ 253 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ--YIFTKIDETT 253 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE--EEEECTTTCS
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE--EEEeCCCccc
Confidence 568999999995433 222222222 3678899999986521 1111112122234443 3469999764
No 254
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.35 E-value=8e-05 Score=72.49 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=33.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHA 86 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~ 86 (593)
++++++|.+|+|||||+|+|++..... .....|.|...... .. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~---------------~~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS---------------VGAQPGITKGIQWF--SL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCEE--EC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc---------------cCCCCCCccceEEE--Ee-CCCEEEEECCCcc
Confidence 699999999999999999998542110 00112444433222 22 3468899999954
No 255
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.27 E-value=0.00087 Score=71.02 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=79.2
Q ss_pred HHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCc-eEEEEEEEEecceecce
Q psy8869 192 LSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFRKLLDQ 270 (593)
Q Consensus 192 ~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~-~~~~v~si~~~~~~~~~ 270 (593)
+++.+++...++ |.....---...|.++|+++..|.++..+|..|.++.|..+++...+.. ...++.|++++++++.+
T Consensus 389 ~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e 467 (501)
T 1zo1_I 389 DEVKAAMSGMLS-PELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNE 467 (501)
T ss_dssp HHTHHHHTTTSS-TTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESE
T ss_pred HHHHHHHHhhcC-ceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccE
Confidence 444445554443 3332333334567789998888999999999999999999998753322 56789999999999999
Q ss_pred eeecceEEEEeccCCccCCccceEEec
Q psy8869 271 GQAGDNIGLLLRGTKREDVERGQVLAK 297 (593)
Q Consensus 271 a~aG~~v~l~l~~~~~~~i~~G~vl~~ 297 (593)
+..|+-|++.+.+. .+++.||+|-.
T Consensus 468 ~~~g~ecgi~~~~~--~~~~~gd~~~~ 492 (501)
T 1zo1_I 468 VRNGMECGIGVKNY--NDVRTGDVIEV 492 (501)
T ss_dssp EETTCCEEEEBCCC--TTCCTTCEEEE
T ss_pred ECCCCEEEEEEcCc--CCCCCCCEEEE
Confidence 99999999999854 58999999853
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.25 E-value=0.0012 Score=65.37 Aligned_cols=129 Identities=18% Similarity=0.124 Sum_probs=68.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-----hh--hhcCceEEeeeeE-E------------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-----EE--KARGITINTAHIE-Y------------ 70 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-----~e--~~~g~t~~~~~~~-~------------ 70 (593)
+.-.++++|+.|||||||++.|.+.....++.-......+.+.. .. ...++.+-..... .
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 44589999999999999999999876543321111111111111 00 1123433221111 0
Q ss_pred -eeCCeEEEEEecCChhhhH----HHHH---Hh-----hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEee
Q psy8869 71 -ETKARHYAHVDCPGHADYI----KNMI---TG-----AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (593)
Q Consensus 71 -~~~~~~~~iiDtpGh~~~~----~~~~---~~-----~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK 137 (593)
...+....++|+.|...+. .+.. .. +..++-.+||+|++.|...... .-.+....++.. + ++||
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t~-i-iiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGITG-L-ILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCCE-E-EEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCCE-E-EEeC
Confidence 0123446789999943321 1111 11 1246778999998876544322 122333567763 3 4699
Q ss_pred cCCCC
Q psy8869 138 ADMVD 142 (593)
Q Consensus 138 ~Dl~~ 142 (593)
+|...
T Consensus 256 lD~~~ 260 (302)
T 3b9q_A 256 LDGSA 260 (302)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 99764
No 257
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.18 E-value=0.00068 Score=67.13 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=66.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCCh-h------hhhcCceEEeee-------e------EE
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAP-E------EKARGITINTAH-------I------EY 70 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~-~------e~~~g~t~~~~~-------~------~~ 70 (593)
+.-.|+++|..|+||||++..|.......++.-......+.+.. . ....|..+-... . ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578889999999999999998776544322111100010000 0 011122221100 0 01
Q ss_pred eeCCeEEEEEecCChhhh----HHHHHHh--hhcCCEEEEEEECCCCCChhhHHHHHHHH-HcCCCeEEEEEeecCCCC
Q psy8869 71 ETKARHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAADGPMPQTREHILLAR-QVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 71 ~~~~~~~~iiDtpGh~~~----~~~~~~~--~~~~d~~ilVvda~~g~~~qt~e~l~~~~-~l~ip~iiVvvNK~Dl~~ 142 (593)
...++.+.|+||||.... ...+... ...+|.+++|+|+..+ ....+.+.... .+++.- +++||+|...
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~g--ivlnk~d~~~ 251 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTG--LVLTKLDGDA 251 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCE--EEEECGGGCS
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCE--EEEECCCCCc
Confidence 114678999999984322 2222111 1258999999999754 23333332222 334442 3479999654
No 258
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.13 E-value=0.0016 Score=66.00 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=68.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChh---h------hhcCceEEeeeeE--E---------
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPE---E------KARGITINTAHIE--Y--------- 70 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~~--~--------- 70 (593)
+.-.|+++|..|||||||++.|.+.....+ +..... -.|.... + ...++.+-..... +
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~-G~V~l~-g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMA-AGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEE-CCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccC-CEEEEe-cccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 446899999999999999999998765432 221111 1122110 0 1123433221110 0
Q ss_pred ---eeCCeEEEEEecCChhhhHHHHHH-------h-----hhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEE
Q psy8869 71 ---ETKARHYAHVDCPGHADYIKNMIT-------G-----AAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFL 135 (593)
Q Consensus 71 ---~~~~~~~~iiDtpGh~~~~~~~~~-------~-----~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvv 135 (593)
...+....++|+.|...+...... . +..++-.+||+|++.|...... .-.+....++.. | ++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~t~-i-ii 310 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGITG-L-IL 310 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCCE-E-EE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCCeE-E-EE
Confidence 012344678999994332111111 1 1247788999998876543322 122333567773 3 46
Q ss_pred eecCCCC
Q psy8869 136 NKADMVD 142 (593)
Q Consensus 136 NK~Dl~~ 142 (593)
||+|...
T Consensus 311 ThlD~~~ 317 (359)
T 2og2_A 311 TKLDGSA 317 (359)
T ss_dssp ESCTTCS
T ss_pred ecCcccc
Confidence 9999764
No 259
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.07 E-value=0.0052 Score=59.54 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=48.3
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl 140 (593)
+.+.+.|+|+|+...........+..+|.+++|+.+.......+...+..+...+++.+-+++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999864432222222336899999999887666666777777778888866466899873
No 260
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.00 E-value=0.00055 Score=65.74 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=48.3
Q ss_pred eCCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 72 ~~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
...+.+.|+|||+.... .+...+..+|.+++|+++.......+...+..+..++++.+.+++|+.+
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 35678999999885443 2334457899999999986544444555556777788887777889998
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=0.0007 Score=67.12 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=50.2
Q ss_pred hhhcCCEEEEEEECCCCCChhh--HHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q psy8869 95 GAAQMDGAILVCSAADGPMPQT--REHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIK 172 (593)
Q Consensus 95 ~~~~~d~~ilVvda~~g~~~qt--~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~ 172 (593)
.+.++|.+++|+|+..+.+... .+.+..+...++|.+| ++||+|+.+.++..+.+ .++.+..+..+ .++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vi-vlnK~DL~~~~~~~~~~-~~~~~~y~~~g-----~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPII-CITKMDLIEDQDTEDTI-QAYAEDYRNIG-----YDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEE-EEECGGGCCCHHHHHHH-HHHHHHHHHHT-----CCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECCccCchhhhHHHH-HHHHHHHHhCC-----CeEEE
Confidence 4678999999999997655332 3344445567888766 57999999763310111 23344444444 46999
Q ss_pred eccCcc
Q psy8869 173 GSAKLA 178 (593)
Q Consensus 173 ~Sa~~g 178 (593)
+||.++
T Consensus 156 ~sa~~~ 161 (307)
T 1t9h_A 156 TSSKDQ 161 (307)
T ss_dssp CCHHHH
T ss_pred EecCCC
Confidence 999887
No 262
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.95 E-value=0.0016 Score=67.76 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..+..-|+|+|..++|||||+|+|++..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 4577889999999999999999999763
No 263
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.75 E-value=0.0037 Score=58.40 Aligned_cols=123 Identities=10% Similarity=-0.000 Sum_probs=70.1
Q ss_pred EEEEE-ecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhh----cCceEEee---eeEEeeCCeEEEEEecCCh
Q psy8869 14 NVGTI-GHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKA----RGITINTA---HIEYETKARHYAHVDCPGH 85 (593)
Q Consensus 14 ~I~i~-G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~----~g~t~~~~---~~~~~~~~~~~~iiDtpGh 85 (593)
.|+++ +.-|+||||+.-.|...+...+ .... ..+|....-.. .....+.- ...--...+.+.++|+|+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll--iD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~ 78 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL--IDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQAR 78 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE--EEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE--EECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCC
Confidence 36665 4578999999999987776554 2111 11222110000 00000000 0000024577999999986
Q ss_pred -hhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHc-CCCeEEEEEeecCCCC
Q psy8869 86 -ADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV-GVPYIVVFLNKADMVD 142 (593)
Q Consensus 86 -~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l-~ip~iiVvvNK~Dl~~ 142 (593)
... .+...+..+|.+++++.+.......+...+..+... +.+ +.+++|++|...
T Consensus 79 ~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 79 PEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp CSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred cCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 433 223446689999999998764445555566666664 566 455689999764
No 264
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.74 E-value=0.0035 Score=67.03 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=83.4
Q ss_pred cHHHHHHHhhhhCCCCCCCCCCCeeEEEEEEEEeCC---CcEEEEEEEEeeeEecCCEEEEeecCCc-eEEEEEEEEecc
Q psy8869 190 SILSLSKALDTYIPTPNRAIDGAFLLPVEDVFSISG---RGTVVTGRVERGIVRVGEELEIIGIKDT-VKTTCTGVEMFR 265 (593)
Q Consensus 190 ~~~~ll~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~---~G~v~~G~v~~G~l~~gd~v~i~p~~~~-~~~~v~si~~~~ 265 (593)
-++++.+++...++ |.....-.-.+.|.++|.++. .|+++..+|..|.++.|..+++...+.. ...++.|++++.
T Consensus 426 l~~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k 504 (537)
T 3izy_P 426 LIEDLQEELSSRLP-CIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHK 504 (537)
T ss_dssp SHHHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSS
T ss_pred HHHHHHHHHHhccC-CceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccC
Confidence 45777777777555 333344446788899999874 6789999999999999999999864332 567888999999
Q ss_pred eecceeeecceEEEEeccCCccCCccceEEe
Q psy8869 266 KLLDQGQAGDNIGLLLRGTKREDVERGQVLA 296 (593)
Q Consensus 266 ~~~~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 296 (593)
+.+.++..|.-|++.+.+ ...+++.||+|-
T Consensus 505 ~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 505 DDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp CCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred cccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 999999999999999986 135899999984
No 265
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.002 Score=58.74 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=67.2
Q ss_pred HHhhhcccceeEEEeeccCcHHHHHHHHHHHHHh---c--CCccceeEEEeeeEEEEEEecCceEEEEecccCcEEEEEE
Q psy8869 411 IERSINNKKRWYVIHSYSGMEKNVQRKLIERINK---L--GMQKKFGRILVPTEEIVDVKKNQKSVIKKRFFPGYVLIEM 485 (593)
Q Consensus 411 ~~~~~~~~~~Wyvl~t~~~~E~~~~~~L~~~~~~---~--~~~~~~~~~~~P~~~~~~~~~g~~~~~~~plfpgYvFv~~ 485 (593)
.-.+.+.++.-|+++|++|+|+.++..|-++... . +-.-..+.+|.|-. +.|||||..
T Consensus 94 ~~r~~S~DP~iw~Vkc~~G~Er~va~~l~~K~~~~~~~~~~~~l~I~Si~~~d~-----------------lkGYIyVEA 156 (200)
T 2exu_A 94 KPRDGSGSATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDN-----------------YTGRIYIEA 156 (200)
T ss_dssp CCTTSCSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHHSCSSCCCCCEEECCTT-----------------STTEEEEEC
T ss_pred cCCCcCCCCCEEEEecCCChHHHHHHHHHHHHHHhhhccCCCCccEEEEEecCC-----------------CcEEEEEEE
Confidence 3344556788999999999999999887666541 1 11223455555443 899999999
Q ss_pred eeChhhhhhhhccCCeeEeccCCCCCceecCHHHHHHHHHH
Q psy8869 486 EMTDESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQ 526 (593)
Q Consensus 486 ~~~~~~~~~i~~~~~v~~~l~~~~~~p~~i~~~~~~~l~~~ 526 (593)
+........+..+++++.. ....||-.||-.+.+.
T Consensus 157 ~~~~~V~~ai~Gi~~vy~~------~~~lVPi~Em~dll~v 191 (200)
T 2exu_A 157 PKQSVIEKFCNGVPDIYIS------QKLLIPVQELPLLLKP 191 (200)
T ss_dssp SCHHHHHHHHTTCTTEEEE------EEEECCGGGHHHHHCS
T ss_pred CCHHHHHHHHhhhhhhhcC------CceEecHHHhHhHhhh
Confidence 9877787888988888552 2468999998877653
No 266
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.70 E-value=0.0045 Score=45.85 Aligned_cols=47 Identities=17% Similarity=0.478 Sum_probs=37.9
Q ss_pred cCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCcee
Q psy8869 541 QLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 591 (593)
Q Consensus 541 ~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~l~ 591 (593)
..|+.|+|..|||+|+.|.|....... +.| +|-.+...|.++.+.|.
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~~~--~RV--ELhs~~K~VtV~r~~l~ 65 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATEST--ARV--ELHSTCQTISVDRQRLT 65 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECSSC--EEE--EESSSCCEEEECTTTEE
T ss_pred cCCCEEEEeccCCCCeEEEEEECCCCe--EEE--EecCCceEEEEEhhhcc
Confidence 489999999999999999999988766 444 45566777888877764
No 267
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.68 E-value=0.0058 Score=59.08 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=48.8
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCH
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDD 143 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~ 143 (593)
.+.+.|+|+|+... ......+..+|.+++|+.+.......+...+..+...+.+.+-+++|++|....
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 57799999998544 334455678999999998765444455556666666677777677899996543
No 268
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.67 E-value=0.0099 Score=64.50 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=70.4
Q ss_pred CCeeEEEE--EEEEeCCCcEEEEEEEEeeeEecCCEEEEeecCCceEEEEEEEEecceecceeeecceEEEEeccCC-cc
Q psy8869 211 GAFLLPVE--DVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTK-RE 287 (593)
Q Consensus 211 ~~~~~~i~--~~~~~~~~G~v~~G~v~~G~l~~gd~v~i~p~~~~~~~~v~si~~~~~~~~~a~aG~~v~l~l~~~~-~~ 287 (593)
.|-.+.|. .+|+.+. |.|+..+|..|.++.|..+.+ +.+ ....++.||++++++++++..|+-|++.+.+.. ..
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~-~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~ 538 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDG-ETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGK 538 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTS-CEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTT
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCC-cEEEEEehhcccCccccccCCCCEEEEEEeCcccCC
Confidence 34455554 6898776 899999999999999999998 444 377899999999999999999999999998642 26
Q ss_pred CCccceEEecC
Q psy8869 288 DVERGQVLAKP 298 (593)
Q Consensus 288 ~i~~G~vl~~~ 298 (593)
+++.||+|-..
T Consensus 539 ~~~~~d~~~~~ 549 (594)
T 1g7s_A 539 TIHEGDTLYVD 549 (594)
T ss_dssp TBCTTCEEEEC
T ss_pred CCCCCCEEEEE
Confidence 89999998643
No 269
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=96.62 E-value=0.0022 Score=53.09 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=32.6
Q ss_pred ceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 537 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 537 ~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
...++.||.|.|+.|+++|.+|.|.++++.++++.|+
T Consensus 40 ~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 40 NVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEe
Confidence 4579999999999999999999999999888776553
No 270
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.57 E-value=0.0053 Score=58.25 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=48.9
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.+.+.++|+|+... ..+...+..+|.+++|+++.......+...+..+...+.+.+-+++|++|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 56799999998544 33445567899999999887544455566666777778777777889999643
No 271
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.45 E-value=0.008 Score=59.46 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=50.6
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
.+++.|||||+...... ....+..+|.+++|+.+......+..+.+..+...+++.+-+++|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 45789999999654322 22234679999999999887778888888888888887665668999954
No 272
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.40 E-value=0.007 Score=59.43 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=51.7
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.+.+.|||||....... ....+..+|.+|+|+.+.........+.+..+...+.+.+-+++|++|.-.
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 45689999999654322 222345799999999998777677777888888889887777889999654
No 273
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.36 E-value=0.023 Score=55.21 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=49.2
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~ 142 (593)
.+.+.|+|||+...... ....+..+|.+++|+.+.........+.+..+...+++.+=+++|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 46789999999644321 122235789999999998877777777777788888887656789999643
No 274
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.23 E-value=0.0082 Score=44.13 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=39.1
Q ss_pred ceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCcee
Q psy8869 537 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVE 591 (593)
Q Consensus 537 ~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~l~ 591 (593)
...|++||.|+|++|-++|-.|.|.+++.. ++++.-+.-.+ ++++-..+|.
T Consensus 15 rK~F~~GDHVkVi~G~~~getGlVV~v~~d--~v~v~SD~t~~--Ei~V~~~dL~ 65 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEEN--FVILFSDLTMH--ELKVLPRDLQ 65 (69)
T ss_dssp CSSCCTTCEEEESSSTTTTCEEEEEEECSS--CEEEEESSSCS--EEEECTTSEE
T ss_pred eeeccCCCeEEEeccEEcCceEEEEEEeCC--EEEEEeCCCCC--EEEEEhHHhh
Confidence 357999999999999999999999999854 57777776644 4444444444
No 275
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=96.19 E-value=0.0039 Score=51.44 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=32.7
Q ss_pred eeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
..++.||.|.|++|+++|.+|.|.++++.++++.|+
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 468999999999999999999999999888787765
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.16 E-value=0.023 Score=57.40 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=50.2
Q ss_pred hhcCCEEEEEEECCCCCC--hhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q psy8869 96 AAQMDGAILVCSAADGPM--PQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (593)
Q Consensus 96 ~~~~d~~ilVvda~~g~~--~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~ 173 (593)
+.++|.+++| ||..... ......|..+...++|.+| ++||+|+++.+. .+.+. +....+...+ .+++++
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~ii-vlNK~DL~~~~~-~~~~~-~~~~~y~~~G-----~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLI-VLNKIDLLDDEG-MDFVN-EQMDIYRNIG-----YRVLMV 198 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEE-EEECGGGCCHHH-HHHHH-HHHHHHHTTT-----CCEEEC
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEE-EEECccCCCchh-HHHHH-HHHHHHHhCC-----CcEEEE
Confidence 4688999876 5544332 2223344455667999765 579999998643 11122 2223334444 469999
Q ss_pred ccCccccCCCCCCCcCcHHHHHHH
Q psy8869 174 SAKLALEGDTGPLGEQSILSLSKA 197 (593)
Q Consensus 174 Sa~~g~~~~~~w~~~~~~~~ll~~ 197 (593)
||.++ .++.+|...
T Consensus 199 Sa~~~----------~gl~~L~~~ 212 (358)
T 2rcn_A 199 SSHTQ----------DGLKPLEEA 212 (358)
T ss_dssp BTTTT----------BTHHHHHHH
T ss_pred ecCCC----------cCHHHHHHh
Confidence 99987 566666553
No 277
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.06 E-value=0.0061 Score=50.57 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=33.9
Q ss_pred CceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 536 PKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 536 ~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
....++.||.|.|+.|.++|.+|.|.+|++.++++.|+
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE 79 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence 45678999999999999999999999999888777764
No 278
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=96.06 E-value=0.0054 Score=52.46 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=32.5
Q ss_pred eeecCCCeEEEecCcCCCCe-EEEEEEECCccEEEEE
Q psy8869 538 ILYQLDELVRIKDGPFTDFS-GNIEEVNYEKSRVRVS 573 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~-g~V~~v~~~~~~v~v~ 573 (593)
..++.||.|.|+.|+++|.+ |.|.++++.+++|.|+
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 46899999999999999999 9999999888777764
No 279
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.05 E-value=0.043 Score=54.00 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=44.4
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH------cCCCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ------VGVPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~ 142 (593)
.+.+.|+|||+...... ...+..+|.+++++.+.......+...+..+.. .+++.+-+++|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 56799999998654432 233456999999999876554444444444433 25665556789999765
No 280
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.04 E-value=0.016 Score=55.77 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=42.4
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCC--------CeEEEEEeecC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV--------PYIVVFLNKAD 139 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~i--------p~iiVvvNK~D 139 (593)
.+.+.++|+|+.... .+...+..+|.+++|+++.......+...+..+...+. ..+-+++|++|
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~ 184 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN 184 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEEC
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCC
Confidence 678999999985443 44455678999999999865333344444444444331 34556689998
No 281
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.01 E-value=0.013 Score=58.19 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=42.1
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH----cCCCeEEEEEeecCC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADM 140 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl 140 (593)
+.+.+.|+|||+..... .+...+..+|.+++|+.+.......+...+..+.. .+++.+-+++|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999998853321 12234578999999998765333444444555554 345544356899994
No 282
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.90 E-value=0.0091 Score=56.90 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=47.1
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC--CCeEEEEEeecCCCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMVD 142 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~--ip~iiVvvNK~Dl~~ 142 (593)
.+.+.++|+|+.... .....+..+|.+++|+.+.......+...+..+...+ .+.+-+++|++|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 567999999985433 2334467899999999887544455566667777766 444666789999654
No 283
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=95.77 E-value=0.013 Score=48.79 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=33.7
Q ss_pred CceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 536 PKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 536 ~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
.+..++.||.|.|+.|.++|.+|.|.++.+.+.++.|+
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 45678999999999999999999999999988777764
No 284
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=95.72 E-value=0.0083 Score=48.92 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=32.4
Q ss_pred eeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 538 ILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 538 ~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
..++.||.|.|++|+.+|.+|.|.++++.++++.|+
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 468899999999999999999999999988787764
No 285
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.65 E-value=0.041 Score=53.18 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=43.5
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcC--CCeEEEEEeecCCC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVG--VPYIVVFLNKADMV 141 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~--ip~iiVvvNK~Dl~ 141 (593)
..+.+.|+|+|+..... ....+..+|.+++++.+...........+..+..++ .+. .+++|+++..
T Consensus 143 ~~yD~viiD~pp~~~~~--~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDVT--LKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCSHH--HHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTT
T ss_pred cCCCEEEEECcCCccHH--HHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCc
Confidence 45779999999854332 344456799999999987544344445555666664 454 4568999543
No 286
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.60 E-value=0.0091 Score=63.16 Aligned_cols=106 Identities=10% Similarity=0.020 Sum_probs=57.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhhhcCCccccccccCCChhhhhcCceEEeeeeEEeeCCeEEEEEecCChhh--
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHYAHVDCPGHAD-- 87 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~iiDtpGh~~-- 87 (593)
+....|+++|.+||||||+..+|............. ...+....+.. | ......++|..|.+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~--~~~d~~r~~~~-g------------~~~~~~ifd~~g~~~~r 101 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE--FNVGQYRRDMV-K------------TYKSFEFFLPDNEEGLK 101 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE--EEHHHHHHHHH-C------------SCCCGGGGCTTCHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE--Eecchhhhhhc-c------------CCCcccccCCCCHHHHH
Confidence 455789999999999999999998654322100000 00000001100 0 001124678888733
Q ss_pred hHHHH--------HHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCe
Q psy8869 88 YIKNM--------ITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130 (593)
Q Consensus 88 ~~~~~--------~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~ 130 (593)
+...+ ...+..+++.++|+|++......-...+..+...+.+.
T Consensus 102 ~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~v 152 (469)
T 1bif_A 102 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKT 152 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcE
Confidence 23222 22333467889999998764333334445666667653
No 287
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.49 E-value=0.021 Score=56.06 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=39.0
Q ss_pred CCeEEEEEecCChhhhHHH-HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH----cCCCeEEEEEeecCCC
Q psy8869 73 KARHYAHVDCPGHADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADMV 141 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~-~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~ 141 (593)
+.+.+.||||||....... .......+|.+++++.+.......+...+..+.. .+++.+-+++|+.+..
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 190 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch
Confidence 3678999999995321000 0111247999999998764222222223333332 3666555668998743
No 288
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.49 E-value=0.4 Score=48.21 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCC---H--HHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q psy8869 99 MDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVD---D--EELLELVEIEIRELLNKYEFPGNDIPIIKG 173 (593)
Q Consensus 99 ~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~---~--~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~ 173 (593)
.+.+++|.-+..-....++..+..+...++|..-+++|++.... + ....+.....++++.+.++.. .+-.+|.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDK--VIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTS--EEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCC--cEEEecC
Confidence 36788888776655567788888999999999878899998652 1 222222334455555555431 2334455
Q ss_pred ccC
Q psy8869 174 SAK 176 (593)
Q Consensus 174 Sa~ 176 (593)
...
T Consensus 315 ~~~ 317 (349)
T 3ug7_A 315 LRT 317 (349)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 289
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.45 E-value=0.055 Score=56.08 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..+..-|+|+|...+|||+|+|.|+...
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 5678899999999999999999887543
No 290
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.44 E-value=0.0042 Score=61.52 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
-.++++|++|+|||||++.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999764
No 291
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.43 E-value=0.053 Score=52.09 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH------cCCCeEEEEEeecCCCC
Q psy8869 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ------VGVPYIVVFLNKADMVD 142 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~------l~ip~iiVvvNK~Dl~~ 142 (593)
..+.+.|+|+|+..... ....+..+|.+++++.+.......+...+..+.. .+++.+-+++|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 56789999999864432 2344567999999999875333333333333332 24554435689998653
No 292
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=95.43 E-value=0.015 Score=46.75 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=30.7
Q ss_pred eecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 539 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 539 ~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
.++.||.|.|++|+.+|.+|.|.++.+. +++.|+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 4789999999999999999999999988 677764
No 293
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=95.42 E-value=0.017 Score=49.41 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 535 RPKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 535 ~~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
.....++.||.|.|+.|.++|.+|.|.+|.+.+.++.|+
T Consensus 44 vRs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VE 82 (150)
T 3iz5_Y 44 VRSIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVE 82 (150)
T ss_dssp CSEEECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred CcccccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEe
Confidence 345689999999999999999999999999988777663
No 294
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=95.41 E-value=0.018 Score=48.40 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=33.1
Q ss_pred CceeecCCCeEEEecCcCCCCeEEEEEEECCccEEEE
Q psy8869 536 PKILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 572 (593)
Q Consensus 536 ~~~~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v 572 (593)
.+..++.||.|.|+.|.++|.+|.|.++.+.+.++.|
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~V 81 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHV 81 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEE
Confidence 4567899999999999999999999999998877765
No 295
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.28 E-value=0.019 Score=55.59 Aligned_cols=69 Identities=13% Similarity=0.026 Sum_probs=39.4
Q ss_pred CCeEEEEEecCChhhhHHH-HHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHH----cCCCeEEEEEeecCCC
Q psy8869 73 KARHYAHVDCPGHADYIKN-MITGAAQMDGAILVCSAADGPMPQTREHILLARQ----VGVPYIVVFLNKADMV 141 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~~~~~-~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~----l~ip~iiVvvNK~Dl~ 141 (593)
+.+.+.|+||||....... .......+|.+++++.+.......+...+..+.. .+++.+-+++|+.+..
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 3578999999995321000 0011246999999998764322333333333433 2566555678999743
No 296
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.23 E-value=0.011 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.+++++|+.|||||||++.|.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 297
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.09 E-value=1.3 Score=43.82 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=33.8
Q ss_pred CEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
+.+++|.-+..-....++..+..+...|+|..=+++|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 488888877655556778888889999999877788999864
No 298
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=95.03 E-value=0.03 Score=44.48 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCeEEEecCcCCCCeEEEEEEECCccEEEEE
Q psy8869 543 DELVRIKDGPFTDFSGNIEEVNYEKSRVRVS 573 (593)
Q Consensus 543 G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~ 573 (593)
||.|.|++|..+|.+|.|.++.+.++++.|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 8999999999999999999999888777764
No 299
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.015 Score=52.66 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 300
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.74 E-value=0.014 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..++++|+.|||||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 301
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.74 E-value=0.021 Score=52.96 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=25.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.++...|+|+|++|||||||++.|.+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35667899999999999999999987765
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.44 E-value=0.02 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.++++|+.|||||||++.|.+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999997653
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.41 E-value=0.025 Score=52.45 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
++...|+++|+.|||||||++.|.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998754
No 304
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.40 E-value=0.021 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|+.|||||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998764
No 305
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.36 E-value=0.087 Score=44.38 Aligned_cols=53 Identities=11% Similarity=0.288 Sum_probs=41.7
Q ss_pred cCCCeEEEecCcCCCCeEEEEEEECCccEEEEEEEe-cCcceEE-eeccCceeeC
Q psy8869 541 QLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTI-FGRATPV-ELEFNQVEKI 593 (593)
Q Consensus 541 ~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v~v~~-~g~~~~v-~~~~~~l~~~ 593 (593)
+.|++|.|+.|++.|..|++.+++..+..+.|.++- .+....+ .+++++|.++
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~ 126 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 126 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEB
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhcc
Confidence 589999999999999999999999887677777752 1123345 5899988763
No 306
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=94.31 E-value=0.24 Score=34.96 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=44.3
Q ss_pred ecCCCeEEEec--CcCCCCeEEEEEEECCccEEEEEEEecCcceEEeeccCceee
Q psy8869 540 YQLDELVRIKD--GPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 592 (593)
Q Consensus 540 ~~~G~~V~I~~--Gpf~g~~g~V~~v~~~~~~v~v~v~~~g~~~~v~~~~~~l~~ 592 (593)
+.||..|+|++ -++-|++|.|.++.+++ +-|.++-=+=...|++.+.+|+.
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgk--aaVLFEGGnWDKLVTf~L~eLe~ 54 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGK--AAVLFENGNWDKLVTFRLSELEA 54 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTE--EEEEEESSSCEEEEEEESTTEEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCc--EEEEecCCCceeEEEEEhhHcee
Confidence 46899999984 58999999999998664 99999988888889999999986
No 307
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.29 E-value=0.027 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+.-.|+++|.+|||||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3357999999999999999999764
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.26 E-value=0.027 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|+.|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998753
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.06 E-value=0.027 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|+.|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998764
No 310
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.98 E-value=0.033 Score=49.30 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+.-.++++|+.|||||||++.|.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34478999999999999999999876
No 311
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.96 E-value=0.028 Score=52.68 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
-.++++|+.|||||||++.|.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999987653
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.85 E-value=0.037 Score=51.33 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=22.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+..-|+++|++|||||||++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44579999999999999999998654
No 313
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.74 E-value=0.038 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
...|+++|++|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999998654
No 314
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.71 E-value=0.25 Score=53.60 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=32.8
Q ss_pred CEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
+.+++|+.+.......+...+..+...+++..-+++|+++-.
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 478999988765556777777888888998877778999854
No 315
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.68 E-value=0.032 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIA 33 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~ 33 (593)
-.++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999754
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.67 E-value=0.042 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+...|+++|.+|||||||+..|.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998654
No 317
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.67 E-value=0.048 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+...|+++|.+|||||||...|.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34679999999999999999987653
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.64 E-value=0.037 Score=50.86 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
...|+++|++|+|||||++.|....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998654
No 319
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.58 E-value=0.031 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999864
No 320
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.54 E-value=0.033 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998864
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.48 E-value=0.04 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..|+++|.+|||||||...|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999765
No 322
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.44 E-value=0.27 Score=47.95 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=26.8
Q ss_pred CeEEEEEecCChhhhHHHHHHhhhcCCEEEEEEECCC
Q psy8869 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD 110 (593)
Q Consensus 74 ~~~~~iiDtpGh~~~~~~~~~~~~~~d~~ilVvda~~ 110 (593)
.+.+.|||+|+.. ...+...+..+|.+|+++.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4679999999864 3344556778999999998863
No 323
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.43 E-value=0.04 Score=52.45 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
=.++++|+.|||||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.42 E-value=0.043 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..|+++|.+|||||||...|....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998654
No 325
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.40 E-value=0.052 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
..++++|..|||||||+++|.....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999987644
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.40 E-value=0.038 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999877
No 327
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.37 E-value=0.037 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|++|+|||||++.|++..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999998643
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.32 E-value=0.048 Score=49.57 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~ 34 (593)
.++++|.+|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.30 E-value=0.054 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.++...|+|+|++|||||||++.|.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45667899999999999999999987654
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.30 E-value=0.061 Score=48.05 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
..++++|..|||||||+.+|...+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46899999999999999999876543
No 331
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.21 E-value=0.049 Score=53.73 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+.-.++|+|++|||||||++.|.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33479999999999999999999765
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.21 E-value=0.051 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
.+|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.17 E-value=0.059 Score=47.86 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.|+++|.+||||||+...|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 334
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.16 E-value=0.04 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999754
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.15 E-value=0.083 Score=47.81 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=25.6
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
..++...|+++|.+||||||+...|......
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3446678999999999999999999876543
No 336
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.14 E-value=0.043 Score=50.11 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.++++|+.|+|||||++.|.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 489999999999999999998765
No 337
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.11 E-value=0.041 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999864
No 338
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.10 E-value=0.058 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+...|+++|..|||||||++.|.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998754
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.09 E-value=0.034 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
.++|+|.+|||||||+..|.+....
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 6899999999999999999876543
No 340
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.03 E-value=0.05 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 341
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.03 E-value=0.042 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 342
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.02 E-value=0.042 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 343
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.01 E-value=0.04 Score=51.41 Aligned_cols=22 Identities=41% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.99 E-value=0.072 Score=52.95 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.+..+.|+++|.+|||||||+..|.+...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999876543
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.99 E-value=0.076 Score=52.08 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=25.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
.++...|+|+|.+|||||||++.|......
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456788999999999999999998876544
No 346
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.96 E-value=0.043 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 347
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.94 E-value=0.056 Score=52.17 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
+.-.++++|+.|||||||++.|.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 445799999999999999999987654
No 348
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.93 E-value=0.045 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 349
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.92 E-value=0.32 Score=50.30 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...-|+++|.+||||||+..+|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998753
No 350
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.90 E-value=0.053 Score=48.14 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAI 32 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L 32 (593)
..|+++|.+||||||+...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 351
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.90 E-value=0.042 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998653
No 352
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.89 E-value=0.045 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 353
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=92.88 E-value=1.3 Score=42.22 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=43.5
Q ss_pred CeEEEEEecCChh-----hh-HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecC
Q psy8869 74 ARHYAHVDCPGHA-----DY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKAD 139 (593)
Q Consensus 74 ~~~~~iiDtpGh~-----~~-~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~D 139 (593)
.+++.++|.||-- +. ..+.--......-+|||+|+..+...++...+..+...+++..=|++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 5678999998731 10 111111112345689999998776666666667777788888777789985
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.87 E-value=0.059 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
+.|+++|.+||||||+...|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 355
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.86 E-value=0.085 Score=48.46 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
+...|+++|.+|||||||...|.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987654
No 356
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.83 E-value=0.047 Score=51.97 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 357
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.81 E-value=0.057 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
...|+++|.+|||||||++.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.81 E-value=0.079 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...|+++|.+||||||+...|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.79 E-value=0.098 Score=48.12 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.+...|+++|..|||||||++.|.+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999987543
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.77 E-value=0.062 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.266 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 361
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.77 E-value=0.048 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67999999999999999998754
No 362
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.75 E-value=0.049 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5799999999999999999865
No 363
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.74 E-value=0.059 Score=49.74 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
...|+++|.+|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998654
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.73 E-value=0.071 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++...|+++|.+|||||||.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44578999999999999999999864
No 365
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.73 E-value=0.049 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998654
No 366
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.71 E-value=0.058 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 367
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=92.71 E-value=0.012 Score=52.46 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred eecCCCeEEEecCcCCCCeEEEEEEECCccEEEE
Q psy8869 539 LYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRV 572 (593)
Q Consensus 539 ~~~~G~~V~I~~Gpf~g~~g~V~~v~~~~~~v~v 572 (593)
.++.||.|.|+.|..+|.+|+|.++++.+++|.|
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViV 101 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVII 101 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCC
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEE
Confidence 4899999999999999999999999988766655
No 368
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.71 E-value=0.05 Score=52.33 Aligned_cols=22 Identities=41% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 369
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.70 E-value=0.072 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..+|+++|.+||||||+...|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 370
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.69 E-value=0.07 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.|++.|.+||||||+...|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998654
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.69 E-value=0.07 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++|+++|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999654
No 372
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.68 E-value=0.082 Score=48.35 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.0
Q ss_pred CCCCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 8 RTKPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 8 ~~k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.-..+..|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHh
Confidence 3446789999999999999999998754
No 373
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.64 E-value=0.061 Score=53.14 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIA 33 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~ 33 (593)
-.++++|++|+|||||++.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.60 E-value=0.081 Score=48.44 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+....|+++|.+||||||+...|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998753
No 375
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.60 E-value=0.091 Score=47.64 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
...|+++|.+||||||+...|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999997643
No 376
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.55 E-value=0.076 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
..|++.|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.54 E-value=0.078 Score=49.48 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++..+|+++|.+||||||+...|...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 378
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.49 E-value=0.09 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
..|++.|.+||||||+...|.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999987654
No 379
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.48 E-value=0.055 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 380
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.47 E-value=0.055 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999764
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.46 E-value=0.073 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHHHh
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
|+++|++|+|||||+++|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998653
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.46 E-value=0.057 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999864
No 383
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.43 E-value=0.056 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998653
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.41 E-value=0.099 Score=48.34 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
+...|++.|.+||||||+...|.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999986543
No 385
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.40 E-value=0.28 Score=45.88 Aligned_cols=29 Identities=21% Similarity=-0.067 Sum_probs=21.0
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
..+..-+.+.|.+|+||||++-.+.....
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34456788899999999998776665443
No 386
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.37 E-value=1 Score=48.76 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=33.6
Q ss_pred cCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 98 QMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 98 ~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
.+|.+++|+.+.......+...+..+...|++..-+++|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 45889999887655556667777778888998877778999854
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.36 E-value=0.079 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++|+++|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999653
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.36 E-value=0.088 Score=52.10 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
++...|+++|..|||||||++.|.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557899999999999999999987643
No 389
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.33 E-value=0.087 Score=48.32 Aligned_cols=25 Identities=36% Similarity=0.382 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
...|+++|.+||||||+...|....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998653
No 390
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.29 E-value=0.6 Score=44.19 Aligned_cols=93 Identities=11% Similarity=0.002 Sum_probs=54.6
Q ss_pred CCeEEEEEecCChhh-----hHHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCCCHHHHH
Q psy8869 73 KARHYAHVDCPGHAD-----YIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELL 147 (593)
Q Consensus 73 ~~~~~~iiDtpGh~~-----~~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~~~~~~~ 147 (593)
..+.+.++|.+|.-. ...+.--......-+|||+++..|...++...+..+...+++ .=|++|+++-.. ...
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~--~~~ 206 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT--AFH 206 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC--HHH
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc--chh
Confidence 356789999987211 001111111123458999999887666677777777778999 777889998554 233
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEe
Q psy8869 148 ELVEIEIRELLNKYEFPGNDIPIIKG 173 (593)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~vi~~ 173 (593)
+.....+++....+ ..|++++
T Consensus 207 ~~~~p~le~~~~~~-----~~~~~~~ 227 (242)
T 3qxc_A 207 SISLPYIELFNTRS-----NNPIVIF 227 (242)
T ss_dssp HHTHHHHHHHHHHC-----SSCCEEG
T ss_pred hhhHHHHHHhcCcc-----cCCceec
Confidence 33333444444332 4455554
No 391
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.20 E-value=0.093 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
..|++.|.+||||||+...|.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987544
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.16 E-value=0.07 Score=50.32 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++...|++.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998754
No 393
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.15 E-value=0.11 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+..+|+++|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.13 E-value=0.048 Score=51.43 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=15.7
Q ss_pred eEEEEEecCCCChHHHHHHHH-HHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIA-TVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~-~~~ 36 (593)
-.++++|+.|||||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999998 653
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.10 E-value=0.11 Score=47.95 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
....|++.|.+||||||+...|.....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999986543
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.08 E-value=0.11 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++.++|+++|.+||||||+...|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999754
No 397
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.08 E-value=0.11 Score=47.57 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=22.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
....+.|+++|.+||||||+...|...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999999764
No 398
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.04 E-value=0.11 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+...|+++|.+||||||+...|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 399
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.98 E-value=0.11 Score=47.77 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
...|++.|.+||||||+...|.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999987654
No 400
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.95 E-value=0.065 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
-.++++|++|+|||||++.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 36899999999999999999754
No 401
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.94 E-value=0.07 Score=51.47 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998654
No 402
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.92 E-value=0.11 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=22.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
=.++++|+.|||||||++.|++....
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 38999999999999999999876544
No 403
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.87 E-value=0.1 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.116 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
...|++.|.+||||||+...|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999998643
No 404
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.86 E-value=0.074 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999764
No 405
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.82 E-value=0.11 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...|++.|.+||||||+...|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999998754
No 406
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.82 E-value=0.091 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
-.++++|++|||||||+..|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 407
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.79 E-value=7.9 Score=38.33 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=32.2
Q ss_pred CEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCC
Q psy8869 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl 140 (593)
+.+++|..+..-....++..+..+...|++..-+++|++..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 46777777665455677888888999999998888999874
No 408
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.78 E-value=0.14 Score=47.02 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=22.9
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++....|++.|.+||||||+...|...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445568999999999999999999754
No 409
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.74 E-value=2.7 Score=41.67 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=32.7
Q ss_pred CEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCC
Q psy8869 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl 140 (593)
+.+++|..+.......+...+..+...|++..-+++|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47888888766555677778888888999988778999983
No 410
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.72 E-value=0.11 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
+...|+|+|..|||||||+..|..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 411
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.69 E-value=0.11 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+|++.|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.66 E-value=0.088 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
-.++++|+.|||||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 413
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.66 E-value=0.57 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
-.+.+.|++|+|||||+-++.....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999998876543
No 414
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.64 E-value=0.059 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.|+|.|.+||||||++..|.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.64 E-value=0.12 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++|++.|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 416
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.63 E-value=0.055 Score=53.42 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999998764
No 417
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.63 E-value=0.13 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 418
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.62 E-value=0.12 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.|++.|.+||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 419
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.47 E-value=0.1 Score=46.84 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.-.+++.|++|+|||||+..+.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999987654
No 420
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.45 E-value=0.088 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.-+++++|+.|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 421
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.44 E-value=0.098 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|+.|||||||++.|.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5799999999999999999864
No 422
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.35 E-value=0.098 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999998753
No 423
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.30 E-value=0.12 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..|.+.|.+||||||+...|...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998653
No 424
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.28 E-value=0.089 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|..|||||||++.|.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999998653
No 425
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.27 E-value=0.8 Score=42.93 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=44.4
Q ss_pred CCeEEEEEecCChh------hh-HHHHHHhhhcCCEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 73 KARHYAHVDCPGHA------DY-IKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 73 ~~~~~~iiDtpGh~------~~-~~~~~~~~~~~d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
..+.+.++|+||.- .+ ...... ....-+|+|+++..+...++...+..+...+++..=|++|++|-.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~--~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIK--ALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHH--HHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHH--HcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 46789999998731 11 111111 122448899999877666677667777788998776778999753
No 426
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.22 E-value=0.11 Score=46.38 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+|+++|.+||||||+...|....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999997643
No 427
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.19 E-value=0.14 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIAT 34 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~ 34 (593)
.+.|++.|..||||||+...|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 428
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.19 E-value=0.14 Score=45.92 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.4
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+...|+++|.+||||||+...|....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998754
No 429
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.17 E-value=0.13 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...|+++|.+||||||+...|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999754
No 430
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.11 E-value=0.12 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.-.++++|++|+|||||+..+.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999987643
No 431
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.11 E-value=1 Score=44.29 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.+.+.|++++|||||+-++.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999887765443
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.09 E-value=0.18 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.169 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..|++.|.+||||||+...|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 433
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.07 E-value=0.14 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+..+.|+|.|.+||||||+...|....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997643
No 434
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.05 E-value=0.65 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
-.+.|.|++|+|||||+..+.....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999886543
No 435
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.01 E-value=0.079 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|+.|||||||++.|.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998653
No 436
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.96 E-value=0.12 Score=52.16 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998653
No 437
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.96 E-value=0.34 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
-+.+.|.+|+|||||+-.+......
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999888765443
No 438
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.90 E-value=0.12 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57999999999999999998753
No 439
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.90 E-value=0.15 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
-+|++.|.+||||||+...|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
No 440
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.81 E-value=1.3 Score=44.73 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.+.|.|.+++|||||+-.+....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHH
Confidence 57779999999999998887554
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.79 E-value=0.15 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
++|.++|.+||||+|....|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 442
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.79 E-value=0.16 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...|+++|.+||||||+...|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 443
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.76 E-value=0.12 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57999999999999999998754
No 444
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.73 E-value=0.13 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57999999999999999998753
No 445
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.65 E-value=0.17 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.....|+++|.+|||||||...|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.64 E-value=0.15 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++|+++|.+||||||+...|....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999997643
No 447
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.62 E-value=0.11 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=17.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...|++.|.+||||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999754
No 448
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.56 E-value=0.16 Score=51.64 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
+.-.++++|++|||||||++.|.+....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 4457999999999999999999876543
No 449
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.54 E-value=0.13 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57999999999999999998653
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.52 E-value=0.16 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+.|++.|.+||||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 451
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.51 E-value=0.13 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57999999999999999998653
No 452
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.50 E-value=0.17 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..+.|++.|.+||||||+...|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998754
No 453
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.46 E-value=0.15 Score=48.73 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.+....|.++|.+||||||+...|....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445789999999999999999997653
No 454
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.42 E-value=0.16 Score=45.57 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..+|+++|.+||||||+...|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357899999999999999999754
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.27 E-value=0.16 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..|+++|.+||||||+...|....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997653
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.27 E-value=0.24 Score=46.64 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
++...|++.|.+||||||++..|......
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35578999999999999999999876543
No 457
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.26 E-value=0.19 Score=49.00 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.5
Q ss_pred CCeeEEEEEecCCCChHHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAIA 33 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L~ 33 (593)
...+.|++.|.+||||||+...|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999987
No 458
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.16 E-value=0.16 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=22.5
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+.=.++++|+.|||||||++.|++..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 44579999999999999999998764
No 459
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.15 E-value=0.12 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.+++++|++|||||||++.|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999864
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.06 E-value=0.2 Score=47.11 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
...+|+++|.+||||||+...|...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999764
No 461
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.04 E-value=0.1 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57999999999999999998653
No 462
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.98 E-value=0.19 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.|++.|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 463
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.97 E-value=0.17 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
..+|+|..|||||||+.+|...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999986543
No 464
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.90 E-value=0.2 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q psy8869 12 HINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 12 ~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.-.++++|..|||||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 346789999999999999999865
No 465
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.76 E-value=0.25 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..|+++|.+||||||+...|...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998654
No 466
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.73 E-value=8.2 Score=38.46 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=33.0
Q ss_pred CEEEEEEECCCCCChhhHHHHHHHHHcCCCeEEEEEeecCCC
Q psy8869 100 DGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADMV 141 (593)
Q Consensus 100 d~~ilVvda~~g~~~qt~e~l~~~~~l~ip~iiVvvNK~Dl~ 141 (593)
+.+++|..+..-....+...+..+...|++..-+++|++.-.
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 578888877655556777788888899999877789999853
No 467
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.72 E-value=0.26 Score=45.53 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
+...|+++|.+||||||+...|.....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446799999999999999999987654
No 468
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.70 E-value=0.18 Score=51.57 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.++++|+.|||||||++.|.+...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 579999999999999999987543
No 469
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.68 E-value=0.23 Score=46.25 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
-.++++|++|+|||||+..|.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999986544
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.62 E-value=0.14 Score=50.27 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=19.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+...|+|.|.+||||||+.+.|....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999997643
No 471
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.56 E-value=0.21 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.|+++|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998754
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.55 E-value=0.23 Score=46.89 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 9 TKPHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 9 ~k~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..+...|+++|.+||||||+...|...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999999999999999998764
No 473
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.45 E-value=0.11 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998653
No 474
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.37 E-value=0.23 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.|+++|.+|||||||...|....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999997653
No 475
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.31 E-value=0.92 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhh
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
.+|+|+.|||||||+++++..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 55999999999999999986653
No 476
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.21 E-value=0.2 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
-+|+++|.+||||||+...|...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999764
No 477
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.12 E-value=0.73 Score=49.03 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
....|.++|.+||||||+...|...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999997654
No 478
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.07 E-value=0.2 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
-.++++|+.|||||||++.|.+...
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccc
Confidence 4689999999999999999987654
No 479
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.97 E-value=0.31 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
..|.++|.+||||+|....|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999754
No 480
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.95 E-value=0.23 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
=+++++|+.|+|||||++.|++.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 481
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.71 E-value=0.28 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.+++++++|.+||||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999764
No 482
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.69 E-value=0.22 Score=43.30 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHHHHHh
Q psy8869 15 VGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.+|+|+.|+|||||+.+|...+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999997654
No 483
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.36 E-value=0.25 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
-.++++|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998764
No 484
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.31 E-value=1.4 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
-.+.+.|.+++|||||+-.|.....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999998876543
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.20 E-value=0.24 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
=.++++|+.|||||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 486
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.01 E-value=0.69 Score=45.70 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLS 37 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~ 37 (593)
--+.+.|.+|+|||||+-.+.....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999988875443
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.98 E-value=0.33 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.|++.|.+||||||+...|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
No 488
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.90 E-value=0.27 Score=47.63 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q psy8869 15 VGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 15 I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+++.|++|+|||||++.|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999865
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.62 E-value=0.36 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
..|+|+|.++||||||...|....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 579999999999999999998754
No 490
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.59 E-value=0.32 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCeeEEEEEecCCCChHHHHHHH
Q psy8869 10 KPHINVGTIGHVDHGKTTLTAAI 32 (593)
Q Consensus 10 k~~~~I~i~G~~~~GKSTLi~~L 32 (593)
+...+|.++|..+||||||+.+|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 56789999999999999999987
No 491
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.44 E-value=0.31 Score=47.66 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
-++++|++|+|||||+..|......
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999876543
No 492
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.32 E-value=1.1 Score=46.51 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhhh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVLSK 38 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~~~ 38 (593)
--+.+.|.+|+|||||+-.+......
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 35889999999999999888765443
No 493
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.29 E-value=0.32 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
.++++|++|+|||||+..|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999865
No 494
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.22 E-value=0.34 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
=+++++|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999865
No 495
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.22 E-value=2.5 Score=38.30 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.+.+.|.+|+|||||+..+....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998654
No 496
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.11 E-value=0.3 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q psy8869 13 INVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 13 ~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
=.++++|+.|||||||++.|.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999998754
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.98 E-value=0.27 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHHh
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
+-=.++++|+.|||||||++.|.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33478999999999999999998753
No 498
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.96 E-value=0.27 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998653
No 499
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.88 E-value=0.29 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q psy8869 14 NVGTIGHVDHGKTTLTAAIATVL 36 (593)
Q Consensus 14 ~I~i~G~~~~GKSTLi~~L~~~~ 36 (593)
.++++|+.|||||||++.|.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 500
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.86 E-value=0.39 Score=48.81 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCChHHHHHHHHHH
Q psy8869 11 PHINVGTIGHVDHGKTTLTAAIATV 35 (593)
Q Consensus 11 ~~~~I~i~G~~~~GKSTLi~~L~~~ 35 (593)
+.-.++++|++|+|||||+..|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999864
Done!