RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8869
(593 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 247 bits (632), Expect = 1e-79
Identities = 143/204 (70%), Positives = 162/204 (79%), Gaps = 9/204 (4%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFG-GEAKSYDQIDAAPEEKARGITINTAHI 68
KPH+NVGTIGHVDHGKTTLTAA+ V + + E K Y ID APEE+ARGITINTAH+
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 60
Query: 69 EYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV 128
EYET RHY+HVDCPGHADYIKNMITGAAQMDGAILV SAADGPMPQTREHILLARQVGV
Sbjct: 61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 120
Query: 129 PYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTG---- 184
PYIVVF+NK DMVDD ELL+LVE+E+R+LLN+YEFPG+++P+I+GSA LALE
Sbjct: 121 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 180
Query: 185 ----PLGEQSILSLSKALDTYIPT 204
I L A+D YIPT
Sbjct: 181 RRGENEWVDKIWELLDAIDEYIPT 204
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 234 bits (598), Expect = 1e-74
Identities = 128/196 (65%), Positives = 156/196 (79%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
KPH+NVGTIGHVDHGKTTLTAAI +L++ G + K Y++ID APEE+ARGITIN AH+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
Y T ARHYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 130 YIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ 189
++VV++NKAD V D E++ELVE+EIRELL ++ + G + PII GSA ALE LG +
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLK 180
Query: 190 SILSLSKALDTYIPTP 205
S+ L A+DTYIP P
Sbjct: 181 SVQKLLDAVDTYIPVP 196
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 205 bits (523), Expect = 5e-63
Identities = 72/237 (30%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 8 RTKPHINVGTIGHVDHGKTTLTAAI---------------ATVLSKKFGGEAKSYDQIDA 52
+ K HINV IGHVD GK+T T + ++ G K +D
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 61
Query: 53 APEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP 112
E+ RGITI+ A ++ET +D PGH D+IKNMITG +Q D AIL+ + G
Sbjct: 62 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 121
Query: 113 M-------PQTREHILLARQVGVPYIVVFLNKADMVD-DEELLELVEIEIRELLNKYEFP 164
QTREH LLA +GV ++V +NK D V DE + + E + K +
Sbjct: 122 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 181
Query: 165 GNDIPIIKGSAKLAL--------------EGDTGPLGEQSILSLSKALDTYIPTPNR 207
+P + S G +L +A+D I P+R
Sbjct: 182 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSR 237
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 172 bits (437), Expect = 9e-51
Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAI--------------ATVLSKKFGGEA-KSYDQIDAAP 54
KPH+N+ IGHVDHGK+TL + A +KK G E+ K +D
Sbjct: 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 60
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP-- 112
EE+ RG+TIN + +ETK + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 61 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 120
Query: 113 -----MPQTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVEIEIRELLNKYEFP 164
QTREHI+LA+ +G+ ++V +NK D+ + DE+ + + ++ + + Y F
Sbjct: 121 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 180
Query: 165 GNDIPIIKGSAKLA--LEGDTGPLGEQSILSLSKALDTYIPTPNR 207
N + + A + + + + +L + LD + P +
Sbjct: 181 TNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPK 224
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 151 bits (382), Expect = 3e-43
Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 29/216 (13%)
Query: 6 FERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINT 65
+ + +P +N+G +GHVDHGKTTL AI + + K E K I E G+ +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 66 AH---------------IEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAAD 110
+ R + +D PGH + M++GAA MDGAILV +A +
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 111 -GPMPQTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIP 169
P PQTREH + +GV +++ NK D+V EE L +I++ ++P
Sbjct: 122 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR-QIKQFTK--GTWAENVP 178
Query: 170 IIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTP 205
II SA + D SL + ++ YI TP
Sbjct: 179 IIPVSALHKINID----------SLIEGIEEYIKTP 204
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 134 bits (338), Expect = 3e-38
Identities = 74/92 (80%), Positives = 88/92 (95%)
Query: 208 AIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKL 267
AID FLLP+EDVFSISGRGTVVTGRVERGI++VGEE+EI+GIK+T K+TCTGVEMFRKL
Sbjct: 1 AIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKL 60
Query: 268 LDQGQAGDNIGLLLRGTKREDVERGQVLAKPG 299
LD+G+AG+N+G+LLRG KRE++ERGQVLAKPG
Sbjct: 61 LDEGRAGENVGVLLRGIKREEIERGQVLAKPG 92
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 139 bits (351), Expect = 5e-38
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
N+G H+D GKTT T I T K G + +D +E+ RGITI A
Sbjct: 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 67
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
K +D PGH D+ + +DGAI+V ++ G PQ+ A + VP
Sbjct: 68 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-R 126
Query: 132 VVFLNKADMVDDEELLELVEIEIR 155
+ F NK D + L + ++ R
Sbjct: 127 IAFANKMDKTGADLWLVIRTMQER 150
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 131 bits (331), Expect = 2e-37
Identities = 57/97 (58%), Positives = 75/97 (77%)
Query: 207 RAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK 266
R ++ FLLPVE V+SI GRGTVVTG +ERGI++ G+E E +G ++T TG+EMF K
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 267 LLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 303
LD+ +AGDN+G L+RG KRED+ RG V+AKPGSI+P
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQP 98
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 129 bits (324), Expect = 8e-35
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 18/185 (9%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAI--------------ATVLSKKFGGEAKSYDQ---IDA 52
K + T G+VD GK+TL + T SKK G D +D
Sbjct: 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDG 66
Query: 53 APEEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP 112
E+ +GITI+ A+ + T R + D PGH Y +NM TGA+ D AI++ A G
Sbjct: 67 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 126
Query: 113 MPQTREHILLARQVGVPYIVVFLNKADMVDDE-ELLELVEIEIRELLNKYEFPGNDIPII 171
QTR H +A +G+ +IVV +NK D+ + + E ++ + + F + +
Sbjct: 127 QTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFV 186
Query: 172 KGSAK 176
SA
Sbjct: 187 PMSAL 191
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 123 bits (310), Expect = 2e-34
Identities = 67/100 (67%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
Query: 205 PNRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIK-DTVKTTCTGVEM 263
P R +D FL+PVEDVF+I+GRGTV TGR+ERG V+VG+E+EI+G+ +T KT TGVEM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 264 FRKLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 303
RK L +G AGDN+G+LLRG RE+VERGQVLAKPGSI P
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 100
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 124 bits (312), Expect = 6e-33
Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 29/195 (14%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAI--------------ATVLSKKFGGEAKSYDQIDAA-P 54
K H+N+ IGHVD GK+TL I +K+ G E+ +
Sbjct: 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 81
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
EE+ +G T+ +ET+ R ++ +D PGH Y+ NMI GA+Q D +LV SA G
Sbjct: 82 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 141
Query: 115 -------QTREHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKY------ 161
QTREH +LAR G+ ++VV +NK D + E + E + L+ +
Sbjct: 142 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYK-ECVDKLSMFLRRVAG 200
Query: 162 EFPGNDIPIIKGSAK 176
D+ + SA
Sbjct: 201 YNSKTDVKYMPVSAY 215
>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 119
Score = 113 bits (284), Expect = 1e-30
Identities = 42/115 (36%), Positives = 71/115 (61%), Gaps = 7/115 (6%)
Query: 419 KRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQ-KSVIKKRFF 477
WY +H+ G E+ + L +RI G+Q K ++L+PTEE+V++++ K V++K+ F
Sbjct: 2 IEWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLF 61
Query: 478 PGYVLIEMEMTD-----ESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQI 527
PGY+ I+M++ D E+W +V+ T +TGF+G RP P+S E+ IL+
Sbjct: 62 PGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAG-MRPVPLSPDEVRHILEVS 115
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 113 bits (284), Expect = 9e-30
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKS---------YDQIDAAPEEKARG 60
+ +N+G +GHVDHGKTTLT A+ V + E + +I P
Sbjct: 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYS 62
Query: 61 ITINTAHIEYE-TKARHYAHVDCPGHADYIKNMITGA-AQMDGAILVCSAADGPMPQTRE 118
+ + +E R + +D PGH + M+ GA +++ + P PQTRE
Sbjct: 63 TSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 122
Query: 119 HILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLA 178
H++ + +G I++ NK ++VD E+ LE +I+E + + PII SA
Sbjct: 123 HLMALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE--GTVAENAPIIPISAL-- 177
Query: 179 LEGDTGPLGEQSILSLSKALDTYIPT 204
G +I L KA++ +IPT
Sbjct: 178 -HGA-------NIDVLVKAIEDFIPT 195
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 117 bits (294), Expect = 1e-29
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 19/171 (11%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
N+ I HVDHGK+TLT ++ +A D +E+ RGITI + I ++
Sbjct: 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 78
Query: 74 ARH----------------YAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTR 117
+D PGH D+ + DGA++V +G QT
Sbjct: 79 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 138
Query: 118 EHILLARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDI 168
+ A + + V +NK D E ++ + ++ + + N I
Sbjct: 139 TVLRQALGERIKPV-VVINKVDRALLEL--QVSKEDLYQTFARTVESVNVI 186
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 109 bits (273), Expect = 3e-29
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITV 363
H+ ++Y L+K+EGGRH PF S++ P + T D+ I LP KE+ MPG+++ +T+
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTL 60
Query: 364 RLINPIAMEEGLRFAIREG 382
L P+ +E+G RF +R+G
Sbjct: 61 ILRQPMILEKGQRFTLRDG 79
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 108 bits (270), Expect = 5e-29
Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 207 RAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRK 266
R + F +P++ F I G GTVVTG + +GIV+VG+EL+++ I + T ++ F++
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMS--TKVRSIQYFKE 58
Query: 267 LLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
+ + +AGD +G+ ++G + + RG +L +
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G
protein NusG, N-terminal domain {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 106 bits (267), Expect = 2e-28
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 418 KKRWYVIHSYSGMEKNVQRKLIERINKLGMQKKFGRILVPTEEIVDVKKNQKSVIKKRFF 477
+K+WY + G E + L++ + G++ ++VP + F
Sbjct: 6 EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVP---------------ANKIF 50
Query: 478 PGYVLIEMEMTDESWHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKK 529
PGY+LI+ M D+ ++ T V + +P P+ +E++ IL QIK+
Sbjct: 51 PGYILIKAHMNDKLLMAIEKTPHVFRPVMVG-GKPVPLKEEEVQNILNQIKR 101
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 104 bits (260), Expect = 2e-27
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 210 DGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLD 269
D LP++DV+ I G GTV GRVE G+++ G + T + VEM + L+
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKS--VEMHHEQLE 58
Query: 270 QGQAGDNIGLLLRGTKREDVERGQVLAKPGSIKP 303
QG GDN+G ++ +++ RG V + P
Sbjct: 59 QGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPP 92
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 99.6 bits (248), Expect = 5e-26
Identities = 56/79 (70%), Positives = 62/79 (78%)
Query: 304 HKHFTGEIYALSKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPKNKEMVMPGDNVLITV 363
H F +Y L K+EGGRHT FFS YRPQFYFRTTDVTG ++LP EMVMPGDNV TV
Sbjct: 1 HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTV 60
Query: 364 RLINPIAMEEGLRFAIREG 382
LI P+A+EEGLRFAIREG
Sbjct: 61 ELIKPVALEEGLRFAIREG 79
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 99.6 bits (248), Expect = 7e-26
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 209 IDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLL 268
+D +P++DV+SISG GTV GRVE G+++VG+++ + +E +
Sbjct: 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM--PAGKVGEVRSIETHHTKM 59
Query: 269 DQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
D+ + GDNIG +RG +++D++RG V+ P +
Sbjct: 60 DKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 91
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 93.7 bits (233), Expect = 6e-24
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 206 NRAIDGAFLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR 265
R ++ F++P+ + GT++ G++E G ++ + ++ I T++ T E
Sbjct: 3 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE 60
Query: 266 KLLDQGQAGDNIGLLLRGTKREDVERGQVLAKPGS 300
+ + GD + L +RG DV+ G VL +
Sbjct: 61 E-ISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN 93
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 92.4 bits (229), Expect = 4e-23
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 207 RAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKDTVK--- 255
R D + V F I+ +G V+ G + +G+ +VG+E+EI +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 256 -------TTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP 303
T + +L + G IG+ + D G V+ PG++ P
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP 118
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 92.1 bits (228), Expect = 6e-23
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 21/120 (17%)
Query: 205 PNRAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKDTV-- 254
P R + + V F ++ G V+ G + +G ++VG+E+EI
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 255 --------KTTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKPGSIKP 303
T ++ + +++ G +G+ + + D+ G V+ KPG + P
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPP 120
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 87.0 bits (216), Expect = 6e-22
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 537 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEKI 593
K+ ++ + VR+ +GPF +F+G +EEV+ EK ++ V ++IFGR TPVEL+F+QVEKI
Sbjct: 2 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI 58
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 86.2 bits (214), Expect = 1e-21
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 537 KILYQLDELVRIKDGPFTDFSGNIEEVNYEKSRVRVSVTIFGRATPVELEFNQVEK 592
++ ++ + VR+ GPF DF+G + E+N E+ +V+V VTIFGR TPVEL+F+QV K
Sbjct: 2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 79.5 bits (196), Expect = 7e-19
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 215 LPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAG 274
+ VE+V +I G V+ G VE G++ VG +++ + +E R+ ++ AG
Sbjct: 12 VVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKG----PSGIGGIVRIERNREKVEFAIAG 66
Query: 275 DNIGLLLRGTKREDVERGQVLAKPGS 300
D IG+ + G K V++G VL +
Sbjct: 67 DRIGISIEG-KIGKVKKGDVLEIYQT 91
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 78.4 bits (193), Expect = 2e-18
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 272
PV+ V + G + GIV G+E+ ++ + + + F L+Q
Sbjct: 7 LRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKS--SRVKSIVTFEGELEQAG 64
Query: 273 AGDNIGLLLRGTKREDVERGQVLAKPGS 300
G + L + D+ RG +L +
Sbjct: 65 PGQAVTLTMED--EIDISRGDLLVHADN 90
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 78.5 bits (193), Expect = 3e-18
Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 207 RAIDGAFLLPVEDVFSISG--------RGTVVTGRVERGIVRVGEELEIIGIKDTVK--- 255
R + ++ V F ++ +G V+ G + +G+ +V +E++++ K
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 256 -------TTCTGVEMFRKLLDQGQAGDNIGLLLR---GTKREDVERGQVLAKP 298
T + + + + + G + + + D G ++
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 113
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 81.9 bits (201), Expect = 7e-18
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 14 NVGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYE 71
V +GH GKTTLT A+ T ++ G + D PE K T+ T
Sbjct: 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 63
Query: 72 TKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYI 131
+ +D PG+ D++ + D A++ SA G T +A ++G+P +
Sbjct: 64 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 123
Query: 132 VVFLNKADMV 141
VV K D
Sbjct: 124 VVV-TKLDKG 132
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 80.5 bits (197), Expect = 8e-18
Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 3/143 (2%)
Query: 15 VGTIGHVDHGKTTLTAAI--ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
V +GHVDHGKTTL I + V S++ GG + + +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIV 132
+D PGH + G A D AIL+ +G PQT+E + + R V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT-PFV 126
Query: 133 VFLNKADMVDDEELLELVEIEIR 155
V NK D + + E
Sbjct: 127 VAANKIDRIHGWRVHEGRPFMET 149
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 74.4 bits (181), Expect = 4e-16
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
+IN+G GH+DHGKTTL+ + E S D PE + RGITI+
Sbjct: 3 FKNINLGIFGHIDHGKTTLSKVLT---------EIASTSAHDKLPESQKRGITIDIGFSA 53
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
++ + VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+ +P
Sbjct: 54 FKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP 113
Query: 130 YIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQ 189
IVV E ++ E+ ++ +L + II SAK TG
Sbjct: 114 IIVVITK--SDNAGTEEIKRTEMIMKSILQSTHNLK-NSSIIPISAK------TG----F 160
Query: 190 SILSLSKALDTYIPTP 205
+ L + T +
Sbjct: 161 GVDELKNLIITTLNNA 176
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 75.4 bits (184), Expect = 7e-16
Identities = 30/224 (13%), Positives = 55/224 (24%), Gaps = 63/224 (28%)
Query: 15 VGTIGHVDHGKTTLTAAI------------------ATVLSKKFGGEAKSYDQIDAAPEE 56
V +G GKTTLT L + + + + ++ E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 57 K--------------ARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDG- 101
I K Y +D PG + G M+
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 102 ----AILVCSAADGPMPQTREHILLAR-----QVGVPYIVVFLNKADMVDDEELLELVEI 152
+ + P + ++G I LNK D++ +EE +
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEKERHRKY 181
Query: 153 --------------------EIRELLNKYEFPGNDIPIIKGSAK 176
++ + + ++ SAK
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAK 225
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 53.1 bits (126), Expect = 8e-09
Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
I V +G + GK+TL AI L+K+ + +++ ++
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAI---LNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVP 129
R ++ + D ++V A G Q + L + G
Sbjct: 63 TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122
Query: 130 YIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
+VVF +V E+ + RE L ++ P+I SA
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY----SPLIFTSAD 165
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 44.0 bits (104), Expect = 5e-06
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQ 272
L + VF S + V G++R G L + ++ + L
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGETVGT--VESMQDKGENLKSAS 63
Query: 273 AGDNIGLLLRG-TKREDVERGQVL 295
G + + ++ + + G L
Sbjct: 64 RGQKVAMAIKDAVYGKTIHEGDTL 87
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 37.5 bits (85), Expect = 0.002
Identities = 13/164 (7%), Positives = 37/164 (22%), Gaps = 9/164 (5%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
I V G + GK++ L+ + S
Sbjct: 17 IEVAFAGRSNAGKSSALNT----LTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72
Query: 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIV 132
+ + + G +++ ++ I A + +V
Sbjct: 73 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132
Query: 133 VFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
+ + + ++ + D+ + S+
Sbjct: 133 LLTKADKLASGA-----RKAQLNMVREAVLAFNGDVQVETFSSL 171
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 37.4 bits (85), Expect = 0.002
Identities = 20/162 (12%), Positives = 50/162 (30%), Gaps = 10/162 (6%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74
+ G + GK++ ++ + Q ++ +
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGF---- 81
Query: 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVF 134
+ + I+ IT ++ + + P + + G+P IV+
Sbjct: 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIA 141
Query: 135 LNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
KAD + + + + +R+ LN +I S++
Sbjct: 142 -TKADKIPKGKWDKHAK-VVRQTLNIDPED----ELILFSSE 177
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 37.3 bits (85), Expect = 0.002
Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 23/189 (12%)
Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETK 73
V +G D GKT L + L+ ++ + + + +
Sbjct: 2 AVLFVGLCDSGKTLLFVRL---LTGQY------------RDTQTSITDSSAIYKVNNNRG 46
Query: 74 ARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV------- 126
+ + + + + V +A L + +
Sbjct: 47 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 106
Query: 127 GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAKLALE-GDTGP 185
P +++ NK D+ + + + +EL + S+ + G G
Sbjct: 107 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGK 166
Query: 186 LGEQSILSL 194
E S L L
Sbjct: 167 EFEFSQLPL 175
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 37.3 bits (85), Expect = 0.002
Identities = 18/160 (11%), Positives = 46/160 (28%), Gaps = 10/160 (6%)
Query: 18 IGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEE-KARGITINTAHIEYETKARH 76
G + GKT+L + + G + K R+
Sbjct: 9 AGPQNSGKTSLLTLLT-------TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 77 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLN 136
A ++K +I + + A+ + + + G+ I++ N
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGID-ILIACN 119
Query: 137 KADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
K+++ ++ + E+ E + ++
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN 159
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 37.0 bits (84), Expect = 0.002
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 11/168 (6%)
Query: 15 VGTIGHVDHGKTTLTAAI----ATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEY 70
+ G + GK+TL + + + G +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 71 ETKARHYAHVDCPGHADYIKN--MITGAAQMDGAILVCSAADGPMPQTREHILLARQVGV 128
+ V + ++ + I+ G +P E R++ +
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 129 PYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
P IV NK D + + + + I + D I SAK
Sbjct: 123 PTIVAV-NKLDKIKNVQEV----INFLAEKFEVPLSEIDKVFIPISAK 165
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 37.0 bits (85), Expect = 0.004
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 10/173 (5%)
Query: 96 AAQMDGAILVCSAADGPMPQTR---EHILLARQVGVPYIVVFLNKADMVDDEELLELVEI 152
+D A+LV SA P T ++L + I+ K D+++D++ E
Sbjct: 8 ICNVDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICI-TKMDLIEDQDT----ED 61
Query: 153 EIRELLNKYEFPGNDIPIIKGSAKLALEGDTGPLGEQSILSLSKALDTYIPTPNRAIDGA 212
I+ Y G D+ + + +L +++ + ++ + AI
Sbjct: 62 TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQS-GVGKSSLLNAISPE 120
Query: 213 FLLPVEDVFSISGRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFR 265
L ++ GRG T VE G + G T E+
Sbjct: 121 LGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGY 173
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 37.4 bits (86), Expect = 0.004
Identities = 19/181 (10%), Positives = 41/181 (22%), Gaps = 28/181 (15%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
+NV G GK++ + ++ AA H
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLR----------GIGNEEEGAAKTGVVE--VTMERHPY 101
Query: 70 YETKARHYAHVDCPG---HADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV 126
+ D PG + + + +A + +
Sbjct: 102 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM 161
Query: 127 GVPYIVVFLNKADMV------------DDEELLELVEIEIRELLNKYEFPGNDIPIIKGS 174
+ V K D D E++L+ + + + I ++
Sbjct: 162 KKEFYFVR-TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNK 220
Query: 175 A 175
Sbjct: 221 N 221
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 35.4 bits (80), Expect = 0.006
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 19/164 (11%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+ + +G GKTT IA+ +F + P I ++ +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIAS---GQFNEDMI--------PTVGFNMRKITKGNVTIKL 51
Query: 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIV 132
Y + + +D A + + + + G+P ++
Sbjct: 52 WDIGGQPRFRSMWERYCRGVSAIVYMVDAAD--QEKIEASKNELHNLLDKPQLQGIP-VL 108
Query: 133 VFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
V NK D+ L E E+ E +N +I S K
Sbjct: 109 VLGNKRDLPG-----ALDEKELIEKMNLSAIQDREICCYSISCK 147
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 35.7 bits (81), Expect = 0.007
Identities = 32/179 (17%), Positives = 52/179 (29%), Gaps = 30/179 (16%)
Query: 3 KSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGIT 62
+ + + +G + GKTTL K+ E S+ T
Sbjct: 7 RKLKSAPDQEVRILLLGLDNAGKTTLL--------KQLASEDISHIT-----------PT 47
Query: 63 INTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILL 122
+++ D G + D I V +AD + L
Sbjct: 48 QGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELT 107
Query: 123 -----ARQVGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
+ VP +++F NK D++ EI E LN + I SA
Sbjct: 108 ELLEEEKLSCVP-VLIFANKQDLLTAAP-----ASEIAEGLNLHTIRDRVWQIQSCSAL 160
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 35.1 bits (79), Expect = 0.011
Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 17/170 (10%)
Query: 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTA 66
E+T V +G + GK+TL + L K A + + +T
Sbjct: 1 EKTYSGF-VAIVGKPNVGKSTLLNNL---LGVKV---APISPRPQTTRKRLRGILTEGRR 53
Query: 67 HIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQV 126
I + + +D G + A +V L V
Sbjct: 54 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLV 113
Query: 127 GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
G I++ NK D E E + Y + SA
Sbjct: 114 GKVPILLVGNKLDAAKYPE----------EAMKAYHELLPEAEPRMLSAL 153
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 31.0 bits (69), Expect = 0.27
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 19/127 (14%)
Query: 18 IGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHY 77
IG GK+ L + +F E+KS G+ T I+ + K
Sbjct: 10 IGDSGVGKSNLLSRFTR---NEFNLESKST-----------IGVEFATRSIQVDGKTIKA 55
Query: 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADGP----MPQTREHILLARQVGVPYIVV 133
D G Y + GA+LV A + + + + + ++V
Sbjct: 56 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 115
Query: 134 FLNKADM 140
NK+D+
Sbjct: 116 G-NKSDL 121
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus
norvegicus [TaxId: 10116]}
Length = 186
Score = 30.0 bits (67), Expect = 0.53
Identities = 9/63 (14%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 381 EGVQQFIQDNLLTKEIVNSNKINIDKGKEYIERSINNKKRWYVIHSYSGMEKNVQRKLIE 440
+ I+ E+ +++N+++ + +E +N W + + + R L++
Sbjct: 6 RTLADLIRI---LHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFD--QYRYTRNLVD 60
Query: 441 RIN 443
+ N
Sbjct: 61 QGN 63
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.1 bits (66), Expect = 0.54
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 18/171 (10%)
Query: 7 ERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARG-ITINT 65
+++ + +G + GK+TL + G + + + G T
Sbjct: 1 DKSYCGF-IAIVGRPNVGKSTLLNKLL-------GQKISITSRKAQTTRHRIVGIHTEGA 52
Query: 66 AHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ 125
Y + + K + ++ I V E +L +
Sbjct: 53 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLR 110
Query: 126 VGVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
G +++ +NK D V ++ ++ L N + I+ SA+
Sbjct: 111 EGKAPVILAVNKVDNVQEKA-------DLLPHLQFLASQMNFLDIVPISAE 154
>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase
N-terminal domain {Archaeon Sulfolobus islandicus
[TaxId: 43080]}
Length = 210
Score = 30.0 bits (67), Expect = 0.68
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 253 TVKTTCTGVEMFRKLLDQGQAGDNIGLLLRGTKREDV--ERGQVLAKPGSIKPHKHFTGE 310
T G+ ++ D N G D+ VL GS H H T +
Sbjct: 97 CTNTVHGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLG-LGSCVNHLHCTTD 155
Query: 311 IYALSKDEGGRHTP 324
+ +T
Sbjct: 156 KC---PWKEQNYTT 166
>g1mtp.1 e.1.1.1 (A:,B:) Thermopin {Thermobifida fusca [TaxId:
2021]}
Length = 355
Score = 30.2 bits (67), Expect = 0.75
Identities = 4/84 (4%), Positives = 17/84 (20%)
Query: 371 MEEGLRFAIREGVQQFIQDNLLTKEIVNSNKINIDKGKEYIERSINNKKRWYVIHSYSGM 430
+ L + + + ++ + + + +
Sbjct: 54 LTTLLGTDPAPLLAALDRAVTDSPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTAD 113
Query: 431 EKNVQRKLIERINKLGMQKKFGRI 454
+ + +N G I
Sbjct: 114 FRTNPEGVRATVNADIADATRGMI 137
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 28.8 bits (63), Expect = 1.2
Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 32/170 (18%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+ + +G + GK+TL + D A G T + E
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLL---------------NEDRAIVTDIPGTTRDVISEEIVI 45
Query: 73 KARHYAHVDCPGHADYIKNMITGAAQM------DGAILVCSAADGPMPQTREHILLARQV 126
+ + VD G +++ + A +V D P E + ++
Sbjct: 46 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI 105
Query: 127 GVPYIVVFLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
+V +NK D+V+ E+ G D ++K SA
Sbjct: 106 KNKRYLVVINKVDVVEKINEEEI-----------KNKLGTDRHMVKISAL 144
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.0 bits (64), Expect = 1.2
Identities = 24/163 (14%), Positives = 39/163 (23%), Gaps = 27/163 (16%)
Query: 18 IGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKARHY 77
IG GKT + + F GI IE + K
Sbjct: 12 IGDSGVGKTCVLFRFSE---DAFNST-----------FISTIGIDFKIRTIELDGKRIKL 57
Query: 78 AHVDCPGHADYIKNMITGAAQMDGAILVCSAADG----PMPQTREHILLARQVGVPYIVV 133
D G + G +LV + + +I V +++
Sbjct: 58 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 117
Query: 134 FLNKADMVDDEELLELVEIEIRELLNKYEFPGNDIPIIKGSAK 176
+ E E + I ++ SAK
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALD---------YGIKFMETSAK 151
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 27.0 bits (60), Expect = 2.3
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140
A+M GA L+ A + + AR G+ ++
Sbjct: 21 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIAVYEFEGTSVEL 70
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 27.6 bits (60), Expect = 2.4
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 492 WHLVKNTKKVTGFIGGKSNRPTPISSKEIEEILKQIKK 529
H++ K GF ++++ I I K
Sbjct: 99 MHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAK 136
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.3 bits (62), Expect = 2.5
Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 30/196 (15%)
Query: 1 MAKSKFERTKPHINVGTIGHVDHGKTTLTAAIATVLSKKF------GGEAKSYDQIDAAP 54
+ + +T I VG G GK+T A+ ++L+ + S +
Sbjct: 40 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSIL 99
Query: 55 EEKARGITINTAHIEYETKARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMP 114
+K R + + + + ++ AA D V +
Sbjct: 100 GDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFD----VILVETVGVG 155
Query: 115 QTREHILLARQVGVPYI--------------------VVFLNKADMVDDEELLELVEIEI 154
Q+ + + + ++ +NKAD D E E
Sbjct: 156 QSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEY 215
Query: 155 RELLNKYEFPGNDIPI 170
R L+ P
Sbjct: 216 RAALHILTPPSATWTP 231
>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
(Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 249
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 385 QFIQDNLLTKEIVNSNKINIDKGKEYIERSINNKKRWYVIHSYSGMEKNVQRKLIERINK 444
+ + + T+ ++K + IE+ I + YV + ++ + +RI
Sbjct: 49 HNVAERMQTRG--KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRA 106
Query: 445 L 445
L
Sbjct: 107 L 107
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.4 bits (59), Expect = 3.5
Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 9/138 (6%)
Query: 13 INVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYET 72
+ V G + GK++L A+A G EA I + R +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALA-------GREAAIVTDIAGTTRDVLREHIHIDGMPLHII 54
Query: 73 KARHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHIL--LARQVGVPY 130
I+ Q D + + E +AR
Sbjct: 55 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP 114
Query: 131 IVVFLNKADMVDDEELLE 148
I V NKAD+ + +
Sbjct: 115 ITVVRNKADITGETLGMS 132
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.9 bits (60), Expect = 3.5
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
K IN+ IG GK++L AI L + D+ I
Sbjct: 22 KEGINL-IIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGT 80
Query: 70 YETKARHYAHVDCPGHADYIKNMI 93
R + G +K ++
Sbjct: 81 KYRITRRFLKGYSSGEIHAMKRLV 104
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.4 bits (59), Expect = 3.8
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 7/131 (5%)
Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIEYETKA 74
V +G + GK+TL L KK + + + P + T +
Sbjct: 3 VLIVGRPNVGKSTLFNK----LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV 58
Query: 75 RHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVF 134
+ + A + +L + + E + + ++
Sbjct: 59 FDNPQDIISQKMKEVTLNMIREADL---VLFVVDGKRGITKEDESLADFLRKSTVDTILV 115
Query: 135 LNKADMVDDEE 145
NKA+ + + E
Sbjct: 116 ANKAENLREFE 126
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 27.4 bits (59), Expect = 3.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 23 HGKTTLTAAIATVLSK 38
GKTT TA +A VL
Sbjct: 23 DGKTTTTAMVAHVLKH 38
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma
pallidipennis) [TaxId: 30077]}
Length = 142
Score = 26.6 bits (58), Expect = 4.8
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 420 RWYVIHSYSGMEKNVQRKLIERINKLGM------QKKFGRILVPTEEIVDVKKNQKSVIK 473
WY+ H V +K +K KF + VD K ++ K
Sbjct: 24 TWYLAHGPGVTSPAVCQKFTTSGSKGFTQIVEIGYNKFESNVKFQCNQVDNKNGEQYSFK 83
Query: 474 KRFF----PGYVLIEMEMTDESWHLV 495
+ + ++ +++ LV
Sbjct: 84 CKSSDNTEFEADFTFISVSYDNFALV 109
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 25.9 bits (57), Expect = 5.6
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 91 NMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIVVFLNKADM 140
+ + + L+ AA+ P+ + E A ++
Sbjct: 20 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNEL 69
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 26.6 bits (57), Expect = 7.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 23 HGKTTLTAAIATVLSK 38
GKT++ A +LS+
Sbjct: 11 SGKTSVKEMTAAILSQ 26
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 316
Score = 26.9 bits (58), Expect = 7.5
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 18/53 (33%)
Query: 513 TPISSKEIEEILKQIKKGVEKPRPKILYQLDELVRIKDGPFTDFSGNIEEVNY 565
T I+ E+ L Q Y + L K + +E N+
Sbjct: 1 TDITEDELRNFLTQ-------------YDVGSLTSYK-----GIAEGVENSNF 35
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 26.3 bits (57), Expect = 8.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 23 HGKTTLTAAIATVLSK 38
HGKTT TA I+ + ++
Sbjct: 21 HGKTTTTAMISMIYTQ 36
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 25.5 bits (56), Expect = 8.7
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 225 GRGTVVTGRVERGIVRVGEELEIIGIKDTVKTTCTGVEMFRKLLDQGQAGD 275
G G + + GI+R + + ++ KD + T + R L + ++
Sbjct: 17 GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRK 67
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 26.6 bits (57), Expect = 8.9
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 10 KPHINVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKSYDQIDAAPEEKARGITINTAHIE 69
K IN+ IG GK++L AI L + D+ I
Sbjct: 22 KEGINL-IIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGT 80
Query: 70 YETKARHYAHVDCPGHADYIKNMITGAAQM 99
R + G +K ++ +
Sbjct: 81 KYRITRRFLKGYSSGEIHAMKRLVGNEWKH 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.388
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,277,993
Number of extensions: 117407
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 86
Length of query: 593
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 503
Effective length of database: 1,171,896
Effective search space: 589463688
Effective search space used: 589463688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)