BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8873
(841 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/483 (67%), Positives = 401/483 (83%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 69 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 128
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SAATSLNSKVVSQ +SLL+P++VDAV+KV++P T+VDL+DIK
Sbjct: 129 DMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 189 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 247
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 248 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 307
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 308 EREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 367
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y+ T+SG+++
Sbjct: 368 VVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES 427
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 428 YC---------------------------------IRAFADAMEVIPSTLAENAGLNPIS 454
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE TTGINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 455 TVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 514
Query: 837 VNT 839
VNT
Sbjct: 515 VNT 517
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/277 (73%), Positives = 250/277 (90%), Gaps = 1/277 (0%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
MD+++VVSDY MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K
Sbjct: 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGI 202
+K++VVKDIEREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G
Sbjct: 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGC 358
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
+PG+T+T+VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y
Sbjct: 359 ASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEY 418
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA 322
+ T+SG+++YC RAFA A+EVIP TLAENAGLNPISTVTELRNRHAQGE TTGINVRKG
Sbjct: 419 SRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGG 478
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD++
Sbjct: 479 ISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 515
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 53/59 (89%)
Query: 26 IRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
IR SNI AAKAVADAIRTSLGP+GMDKMIQ G+VTITNDGATILKQM V+HPAA+M+
Sbjct: 12 IRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARML 70
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 517 bits (1331), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/482 (55%), Positives = 364/482 (75%), Gaps = 37/482 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE+S AQD EAGDGTTSVVI+ G+LL AAE+LL+KGIHPT I+D+FQ AA + V+IL
Sbjct: 77 MLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILL 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EM ++L+DRE L+++A+TSL+SK+VSQ +S LAP+AVD+VLK+ + + NVDL DI+
Sbjct: 137 EMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISD-ENSKNVDLNDIR 195
Query: 478 VIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+++K+GGT++DTE++DG+V TQ + + GP R EKAKIGLIQF ISPPK D ++ ++V+
Sbjct: 196 LVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVN 255
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY MD++LKEERAY+LNI K+IKKA CNVLL+QKSILRDA++DLA+HFL K+ ++VVKD
Sbjct: 256 DYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKD 315
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR--TL 654
IERE+IEF+ K L +PIA ++ F + L SADLVEEI + S+ V+++GI+N T+
Sbjct: 316 IEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTV 375
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
+VV+RG+N +++DE RSLHDALCV+RCLVK+R LIAGGGAPEIE+S +L+K A ++ G
Sbjct: 376 SVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEG- 434
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
+ A+ ++ FA ALEVIP TLAENAGLN
Sbjct: 435 --------------------------------VQAFIWQEFASALEVIPTTLAENAGLNS 462
Query: 775 ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834
I VTELR++H GE GI+VR+ TN EE+++QP+LVSTSAITL++E V+SIL+ID
Sbjct: 463 IKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRID 522
Query: 835 DI 836
DI
Sbjct: 523 DI 524
Score = 329 bits (844), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 225/284 (79%), Gaps = 2/284 (0%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
I P ++ ++V+DY MD++LKEERAY+LNI K+IKKA CNVLL+QKSILRDA++DL
Sbjct: 241 ISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDL 300
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRF 196
A+HFL K+ ++VVKDIERE+IEF+ K L +PIA ++ F + L SADLVEEI + S+
Sbjct: 301 ALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKI 360
Query: 197 VKISGIQNPGR--TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 254
V+++GI+N T++VV+RG+N +++DE RSLHDALCV+RCLVK+R LIAGGGAPEIE
Sbjct: 361 VRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIE 420
Query: 255 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 314
+S +L+K A ++ G+ A+ ++ FA ALEVIP TLAENAGLN I VTELR++H GE
Sbjct: 421 ISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELND 480
Query: 315 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
GI+VR+ TN EE+++QP+LVSTSAITL++E V+SIL+IDDI
Sbjct: 481 GISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
++R +NI AA++VADAIRTSLGP+GMDKMI+ S GE+ I+NDG TILKQM ++HP A+M+
Sbjct: 19 EVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARML 78
Query: 85 DHKVVVSDYSAMD 97
D A D
Sbjct: 79 VEVSAAQDSEAGD 91
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 181/504 (35%), Positives = 281/504 (55%), Gaps = 49/504 (9%)
Query: 342 ITLSTETVRSILKIDD----ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIH 397
+T T+ S++ +D ++VELSK+QD E GDGTT VV++AG+LLE AE+LL +GIH
Sbjct: 48 VTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIH 107
Query: 398 PTTISDAFQKAAAKCVEILTEMSTP--ITLADRENLIKSAATSLNSKVVSQQASLLAPIA 455
P I+D +++AA +E L ++S + + + E LI++A T+L SKVV+ +A IA
Sbjct: 108 PIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIA 167
Query: 456 VDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKI 515
V+AVL V + QR +VD + IKV K+GG +EDT+L+ G++ + ++ PK+VE AKI
Sbjct: 168 VNAVLTVADMQR-RDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKI 226
Query: 516 GLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILR 575
++ PPK HK+ V+ + K E+ +++QIK+ G N+ + Q
Sbjct: 227 AILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQW---- 282
Query: 576 DAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP 635
D A H L + + V+ + +IE + R + E L A LV+EI
Sbjct: 283 -GFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEIS 341
Query: 636 AGNS--RFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGG 693
G + + + I +N R +T+ +RG NK++++EA RSLHDALCV+R L++ ++ GG
Sbjct: 342 FGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGG 400
Query: 694 GAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753
GA EI +L +++ AD P +E Y R
Sbjct: 401 GAAEISCALAVSQEADK-----------------CPTLE----------------QYAMR 427
Query: 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQP 812
AFA ALEVIP+ LAEN+G+NPI T+TE+R R + GI+ ++ ++V++
Sbjct: 428 AFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIET 487
Query: 813 LLVSTSAITLSTETVRSILKIDDI 836
L+ I+L+T+ VR ILKIDDI
Sbjct: 488 LIGKKQQISLATQMVRMILKIDDI 511
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 155/285 (54%), Gaps = 9/285 (3%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
P HK+ V+ + K E+ +++QIK+ G N+ + Q D
Sbjct: 233 FEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQW-----GFDDE 287
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSR- 195
A H L + + V+ + +IE + R + E L A LV+EI G ++
Sbjct: 288 ANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKD 347
Query: 196 -FVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 254
+ I +N R +T+ +RG NK++++EA RSLHDALCV+R L++ ++ GGGA EI
Sbjct: 348 KMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 406
Query: 255 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETT 313
+L +++ AD ++ Y RAFA ALEVIP+ LAEN+G+NPI T+TE+R R +
Sbjct: 407 CALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPA 466
Query: 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
GI+ ++ ++V++ L+ I+L+T+ VR ILKIDDI
Sbjct: 467 LGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDI 511
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
S+I AAKAVA+ ++TSLGP G+DKM+ +G+VT+TNDGATIL M+V H AK+M
Sbjct: 14 SHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 69
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 275/483 (56%), Gaps = 43/483 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SK QD E GDGTT+ +++G LL AE+L+ KG+H T IS+ ++ AA KC EIL
Sbjct: 31 MIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILE 90
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD---TNVDLK 474
++ I+ D LIK A T++ K L+ + V AV +V + D NV L+
Sbjct: 91 TITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNV-LE 149
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
+IK+ ++ GG+++D+EL+DGLV ++ ++ N P++VE AKI L+ + KT++D ++
Sbjct: 150 NIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIK 209
Query: 535 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594
++ M L +E + + +++ +G NV+ QK I D+A ++++K + V
Sbjct: 210 ITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQK-----GIDDMAQYYIEKAGIYAV 264
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTL 654
+ +++ D++ + K I LD E + +A LVEE + ++G QN + +
Sbjct: 265 RRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-KAV 323
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
TV++ G + V+D +L+DAL VV +++ ++ GGG+ E+ELSL+L++YA T+ G
Sbjct: 324 TVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGR 383
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
+ L ++K FA+ALEVIP+ LAENAGL+P
Sbjct: 384 E------------------QLAVSK---------------FAEALEVIPVALAENAGLDP 410
Query: 775 ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834
I + ELR++H +G G+NV G + ++ E +V++PL + T AI + E IL+ID
Sbjct: 411 IDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRID 470
Query: 835 DIV 837
D+V
Sbjct: 471 DVV 473
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 161/276 (58%), Gaps = 6/276 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+D ++ ++ M L +E + + +++ +G NV+ QK I D+A ++++K
Sbjct: 204 VDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQK-----GIDDMAQYYIEK 258
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K I LD E + +A LVEE + ++G Q
Sbjct: 259 AGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQ 318
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +TV++ G + V+D +L+DAL VV +++ ++ GGG+ E+ELSL+L++YA
Sbjct: 319 NS-KAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYA 377
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T+ G + FA+ALEVIP+ LAENAGL+PI + ELR++H +G G+NV G +
Sbjct: 378 STLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEV 437
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E +V++PL + T AI + E IL+IDD++
Sbjct: 438 VDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVV 473
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 53 MIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
M+ S G++ ITNDGATILK+M++ HPAAKM+
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMI 32
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 279 bits (713), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 270/482 (56%), Gaps = 42/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE++K QD EAGDGTT+ V++AG LL AE+LL + IHP+ I+ + AA K EIL
Sbjct: 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILD 140
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTN--VDLKD 475
E++ + D E L+K AATS+ K LLA +AV+AV K V ++D VDL +
Sbjct: 141 EIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAV-KQVAEKKDGKYVVDLDN 199
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IK +K G VE++ELV G+V ++ + PKRVE AKI LI + KT+ D K+ +
Sbjct: 200 IKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINI 259
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ + L++E + ++V I + G NV+ VQK I DLA H+L K ++ V+
Sbjct: 260 TSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVR 314
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D+E + K + + ++ PE L A++VEE + + G +NP + +T
Sbjct: 315 RVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVT 373
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +Y
Sbjct: 374 ILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEY-------- 425
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
A V G +A FA AL++IP TLAENAGL+ +
Sbjct: 426 -------------------------AKQVGGKEALAIENFADALKIIPKTLAENAGLDTV 460
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD
Sbjct: 461 EMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDD 520
Query: 836 IV 837
++
Sbjct: 521 VI 522
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 162/275 (58%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 254 DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKY 308
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +N
Sbjct: 309 GIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN 368
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +YA
Sbjct: 369 P-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAK 427
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
V G +A FA AL++IP TLAENAGL+ + + ++ + H GI+V +G
Sbjct: 428 QVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPA 487
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE+ +++PL V AI ++E IL+IDD++
Sbjct: 488 DMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TNDGATIL ++++ HPAAKMM
Sbjct: 23 DAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMM 82
Query: 85 DHKVVVSDYSAMD 97
D A D
Sbjct: 83 VEVAKTQDKEAGD 95
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 270/482 (56%), Gaps = 42/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE++K QD EAGDGTT+ V++AG LL AE+LL + IHP+ I+ + AA K EIL
Sbjct: 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILD 140
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTN--VDLKD 475
E++ + D E L+K AATS+ K LLA +AV+AV K V ++D VDL +
Sbjct: 141 EIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAV-KQVAEKKDGKYVVDLDN 199
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IK +K G VE++ELV G+V ++ + PKRVE AKI LI + KT+ D K+ +
Sbjct: 200 IKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINI 259
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ + L++E + ++V I + G NV+ VQK I DLA H+L K ++ V+
Sbjct: 260 TSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVR 314
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D+E + K + + ++ PE L A++VEE + + G +NP + +T
Sbjct: 315 RVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVT 373
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +Y
Sbjct: 374 ILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEY-------- 425
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
A V G +A FA AL++IP TLAENAGL+ +
Sbjct: 426 -------------------------AKQVGGKEALAIENFADALKIIPKTLAENAGLDTV 460
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD
Sbjct: 461 EMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDD 520
Query: 836 IV 837
++
Sbjct: 521 VI 522
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 162/275 (58%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 254 DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKY 308
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +N
Sbjct: 309 GIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN 368
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +YA
Sbjct: 369 P-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAK 427
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
V G +A FA AL++IP TLAENAGL+ + + ++ + H GI+V +G
Sbjct: 428 QVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPA 487
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE+ +++PL V AI ++E IL+IDD++
Sbjct: 488 DMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TND ATIL ++++ HPAAKMM
Sbjct: 23 DAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMM 82
Query: 85 DHKVVVSDYSAMD 97
D A D
Sbjct: 83 VEVAKTQDKEAGD 95
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 269/482 (55%), Gaps = 42/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE++K QD EAGDGTT+ V++AG LL AE+LL + IHP+ I + AA K EIL
Sbjct: 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILD 140
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTN--VDLKD 475
E++ + D E L+K AATS+ K LLA +AV+AV K V ++D VDL +
Sbjct: 141 EIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAV-KQVAEKKDGKYVVDLDN 199
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IK +K G VE++ELV G+V ++ + PKRVE AKI LI + KT+ D K+ +
Sbjct: 200 IKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINI 259
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ + L++E + ++V I + G NV+ VQK I DLA H+L K ++ V+
Sbjct: 260 TSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVR 314
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D+E + K + + ++ PE L A++VEE + + G +NP + +T
Sbjct: 315 RVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVT 373
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +Y
Sbjct: 374 ILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEY-------- 425
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
A V G +A FA AL++IP TLAENAGL+ +
Sbjct: 426 -------------------------AKQVGGKEALAIENFADALKIIPKTLAENAGLDTV 460
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD
Sbjct: 461 EMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDD 520
Query: 836 IV 837
++
Sbjct: 521 VI 522
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 162/275 (58%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 254 DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKY 308
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +N
Sbjct: 309 GIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN 368
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +YA
Sbjct: 369 P-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAK 427
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
V G +A FA AL++IP TLAENAGL+ + + ++ + H GI+V +G
Sbjct: 428 QVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPA 487
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE+ +++PL V AI ++E IL+IDD++
Sbjct: 488 DMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TND ATIL ++++ HPAAKMM
Sbjct: 23 DAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMM 82
Query: 85 DHKVVVSDYSAMD 97
D A D
Sbjct: 83 VEVAKTQDKEAGD 95
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/481 (34%), Positives = 272/481 (56%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 130
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 131 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I +T+ D ++ ++D
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITD 248
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ + +++E + ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 249 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 303
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K IA++ + L A LVEE + + ++P + +T++
Sbjct: 304 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 362
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 363 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 418
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 419 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 449
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 450 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 509
Query: 837 V 837
+
Sbjct: 510 I 510
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 167/276 (60%), Gaps = 7/276 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D ++ ++D + + +++E + ++V +IK +G NVL QK I DLA H+L K
Sbjct: 241 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAKE 295
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ + +++ D+E + K IA++ + L A LVEE + + ++
Sbjct: 296 GIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKH 355
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+
Sbjct: 356 P-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAE 414
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAI 323
+SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV GA+
Sbjct: 415 GISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAV 474
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 475 EDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 510
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 13 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 72
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 274 bits (700), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/481 (34%), Positives = 272/481 (56%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 137 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 194
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I +T+ D ++ ++D
Sbjct: 195 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITD 254
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ + +++E + ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 255 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 309
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K IA++ + L A LVEE + + ++P + +T++
Sbjct: 310 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 368
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 369 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 424
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 425 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 455
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 456 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 515
Query: 837 V 837
+
Sbjct: 516 I 516
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 167/276 (60%), Gaps = 7/276 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D ++ ++D + + +++E + ++V +IK +G NVL QK I DLA H+L K
Sbjct: 247 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAKE 301
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ + +++ D+E + K IA++ + L A LVEE + + ++
Sbjct: 302 GIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKH 361
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+
Sbjct: 362 P-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAE 420
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAI 323
+SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV GA+
Sbjct: 421 GISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAV 480
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 481 EDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 516
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 19 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 78
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/481 (34%), Positives = 271/481 (56%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 130
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 131 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I +T+ D ++ ++D
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITD 248
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ + +++E + ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 249 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 303
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K I ++ + L A LVEE + + ++P + +T++
Sbjct: 304 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 362
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 363 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 418
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 419 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 449
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 450 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 509
Query: 837 V 837
+
Sbjct: 510 I 510
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 166/276 (60%), Gaps = 7/276 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D ++ ++D + + +++E + ++V +IK +G NVL QK I DLA H+L K
Sbjct: 241 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKE 295
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ + +++ D+E + K I ++ + L A LVEE + + ++
Sbjct: 296 GIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKH 355
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+
Sbjct: 356 P-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAE 414
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAI 323
+SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV GA+
Sbjct: 415 GISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAV 474
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 475 EDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 510
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 13 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 72
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/481 (34%), Positives = 271/481 (56%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 137 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 194
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I +T+ D ++ ++D
Sbjct: 195 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITD 254
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ + +++E + ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 255 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 309
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K I ++ + L A LVEE + + ++P + +T++
Sbjct: 310 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 368
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 369 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 424
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 425 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 455
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 456 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 515
Query: 837 V 837
+
Sbjct: 516 I 516
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 166/276 (60%), Gaps = 7/276 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D ++ ++D + + +++E + ++V +IK +G NVL QK I DLA H+L K
Sbjct: 247 DAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKE 301
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
++ + +++ D+E + K I ++ + L A LVEE + + ++
Sbjct: 302 GIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKH 361
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+
Sbjct: 362 P-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAE 420
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAI 323
+SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV GA+
Sbjct: 421 GISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAV 480
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 481 EDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 516
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 19 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 78
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 167/482 (34%), Positives = 265/482 (54%), Gaps = 44/482 (9%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SKAQD GDGTT+ V+++G LL+ AE LL +G+HPT IS+ ++ A + +I+
Sbjct: 80 MIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIID 139
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD--TNVDLKD 475
E++ T D L K A T+L+ K LA + V AV V RD T VD +
Sbjct: 140 EIAEKST--DDATLRKIALTALSGKNTGLSNDFLADLVVKAV-NAVAEVRDGKTIVDTAN 196
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IKV +K GG+V DT+ + G+V ++ + P V+ AKI LI + KT+++ KV +
Sbjct: 197 IKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQI 256
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
SD S + L +E +V++IKK+G NV+L QK I D+A H+L K + V+
Sbjct: 257 SDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK-----GIDDVAQHYLAKEGIYAVR 311
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D+E + K + + LD P L A+ VEE G+ R + G +NP + ++
Sbjct: 312 RVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVS 370
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
+++RG V+ E R+L+DA+ VV + + GGGA E EL+++L KYA++V G
Sbjct: 371 ILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGG-- 428
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
R +A AFA+ALE+IP TLAENAG++PI
Sbjct: 429 ----REQLA---------------------------IEAFAKALEIIPRTLAENAGIDPI 457
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+T+ +L+ +G + G+++ + ++ + VV PL V T A+ + E IL+IDD
Sbjct: 458 NTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDD 517
Query: 836 IV 837
++
Sbjct: 518 VI 519
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 162/276 (58%), Gaps = 6/276 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 250 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK-----GIDDVAQHYLAK 304
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G +
Sbjct: 305 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 364
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + +++++RG V+ E R+L+DA+ VV + + GGGA E EL+++L KYA
Sbjct: 365 NP-KAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYA 423
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
++V G + AFA+ALE+IP TLAENAG++PI+T+ +L+ +G + G+++ +
Sbjct: 424 NSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGV 483
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ + VV PL V T A+ + E IL+IDD++
Sbjct: 484 GDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 50/58 (86%)
Query: 27 RNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+ +NI AAKA+ADA+RT+LGP+GMDKM+ S G++ I+NDGATILK+M+V HP AKM+
Sbjct: 24 QRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMI 81
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/481 (33%), Positives = 260/481 (54%), Gaps = 64/481 (13%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 130
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 131 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I ++M
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEM-------- 240
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 241 --------------LKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 281
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K IA++ + L A LVEE + + ++P + +T++
Sbjct: 282 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 340
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 341 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 396
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 397 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 427
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 428 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 487
Query: 837 V 837
+
Sbjct: 488 I 488
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 167/278 (60%), Gaps = 8/278 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYIL-NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 142
M KV + + ++ ++E + +L ++V +IK +G NVL QK I DLA H+L
Sbjct: 217 MPKKVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLA 271
Query: 143 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGI 202
K ++ + +++ D+E + K IA++ + L A LVEE + +
Sbjct: 272 KEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEEC 331
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
++P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +Y
Sbjct: 332 KHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREY 390
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKG 321
A+ +SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV G
Sbjct: 391 AEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTG 450
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
A+ ++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 451 AVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 13 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 72
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 255 bits (651), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 259/481 (53%), Gaps = 64/481 (13%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 130
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 131 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I ++M
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEM-------- 240
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 241 --------------LKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 281
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K I ++ + L A LVEE + + ++P + +T++
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 340
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 341 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 396
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 397 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 427
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 428 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 487
Query: 837 V 837
+
Sbjct: 488 I 488
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 166/278 (59%), Gaps = 8/278 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYIL-NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 142
M KV + + ++ ++E + +L ++V +IK +G NVL QK I DLA H+L
Sbjct: 217 MPKKVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLA 271
Query: 143 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGI 202
K ++ + +++ D+E + K I ++ + L A LVEE + +
Sbjct: 272 KEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEEC 331
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
++P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +Y
Sbjct: 332 KHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREY 390
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKG 321
A+ +SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV G
Sbjct: 391 AEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTG 450
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
A+ ++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 451 AVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 13 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 72
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 255 bits (651), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 259/481 (53%), Gaps = 64/481 (13%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 137 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 194
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I ++M
Sbjct: 195 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEM-------- 246
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 247 --------------LKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 287
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K I ++ + L A LVEE + + ++P + +T++
Sbjct: 288 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 346
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 347 IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 402
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 403 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 433
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 434 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 493
Query: 837 V 837
+
Sbjct: 494 I 494
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 166/278 (59%), Gaps = 8/278 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYIL-NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 142
M KV + + ++ ++E + +L ++V +IK +G NVL QK I DLA H+L
Sbjct: 223 MPKKVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLA 277
Query: 143 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGI 202
K ++ + +++ D+E + K I ++ + L A LVEE + +
Sbjct: 278 KEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEEC 337
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
++P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +Y
Sbjct: 338 KHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREY 396
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKG 321
A+ +SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV G
Sbjct: 397 AEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTG 456
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
A+ ++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 457 AVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 494
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 19 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 78
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 266/483 (55%), Gaps = 41/483 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV+++K QD E DGT + VI +G L++ AE LL+K +HPT I ++KA ++ +
Sbjct: 88 LLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQ 147
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDI 476
E++ +++ D + L K A TSL+SK V+ +A I V AV +V + D VDL +I
Sbjct: 148 ELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNI 207
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
++++K GG++ DT+LV G+V ++ + PKR+E AKI LI + K ++D ++ ++
Sbjct: 208 QIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRIN 267
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D + M + L EE I V +I G NV++ QK I ++A +L K VL V+
Sbjct: 268 DPTQMQKFLDEEENLIKEKVDKILATGANVIICQK-----GIDEVAQSYLAKKGVLAVRR 322
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
++ D+E + + R ++++D + L A L+EE G + V + G +NP +++++
Sbjct: 323 AKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISI 381
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG + ++DE R+L DAL V ++K IAGGGA EIE++ KL KY
Sbjct: 382 LIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKY--------- 432
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
AP+ V G + A+A ALE + L ENAG +PI
Sbjct: 433 -----------APQ-------------VGGKEQLAVEAYANALESLVSILIENAGFDPID 468
Query: 777 TVTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ +LR+ H + GI++ G ++ ++ V++P LV +AI +TE +L+IDD
Sbjct: 469 LLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDD 528
Query: 836 IVN 838
+V+
Sbjct: 529 VVS 531
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 157/277 (56%), Gaps = 7/277 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+D ++ ++D + M + L EE I V +I G NV++ QK I ++A +L K
Sbjct: 260 LDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQK-----GIDEVAQSYLAK 314
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
VL V+ ++ D+E + + R ++++D + L A L+EE G + V + G +
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAK 374
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP +++++++RG + ++DE R+L DAL V ++K IAGGGA EIE++ KL KYA
Sbjct: 375 NP-KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYA 433
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGA 322
V G + A+A ALE + L ENAG +PI + +LR+ H + GI++ G
Sbjct: 434 PQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQ 493
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ ++ V++P LV +AI +TE +L+IDD++
Sbjct: 494 PVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVV 530
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 47/56 (83%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+NI A KAV +A++++ GPRGMDKM+ S G++TITNDGATIL +M++ HPAAK++
Sbjct: 34 ANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLL 89
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 251 bits (642), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 258/481 (53%), Gaps = 64/481 (13%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 71 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 130
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + + DL IK
Sbjct: 131 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDL--IK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I ++M
Sbjct: 189 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEM-------- 240
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 241 --------------LKDMVAEIKASGANVLFCQK-----GIDDLAQHYLAKEGIVAARRV 281
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K I ++ + L A LVEE + + ++P + +T++
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 340
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ A+ VV C ++ +++GGG+ E+ELS+KL +YA+ +SG
Sbjct: 341 IRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISG---- 396
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
R +A RAFA ALEVIP TLAENAGL+ I
Sbjct: 397 --REQLA---------------------------VRAFADALEVIPRTLAENAGLDAIEI 427
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 428 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 487
Query: 837 V 837
+
Sbjct: 488 I 488
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 165/278 (59%), Gaps = 8/278 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYIL-NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 142
M KV + + ++ ++E + +L ++V +IK +G NVL QK I DLA H+L
Sbjct: 217 MPKKVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQK-----GIDDLAQHYLA 271
Query: 143 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGI 202
K ++ + +++ D+E + K I ++ + L A LVEE + +
Sbjct: 272 KEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEEC 331
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
++P + +T+++RG+ + V++E AR++ A+ VV C ++ +++GGG+ E+ELS+KL +Y
Sbjct: 332 KHP-KAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREY 390
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKG 321
A+ +SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV G
Sbjct: 391 AEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTG 450
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
A+ ++ E VV+PL V T AI + E+ +L+IDD++
Sbjct: 451 AVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V HPAAKM+
Sbjct: 13 DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKML 72
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 249 bits (636), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 161/484 (33%), Positives = 268/484 (55%), Gaps = 42/484 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SK QD GDGTT+ VI+AG LL+ A+ L+++ +HPT IS+ ++ A+ + ++
Sbjct: 79 MMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVID 138
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTN--VDLKD 475
E+ST I ++ L+K A TSLNSK S LA I+ +AV K V RD VD +
Sbjct: 139 EISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAV-KSVAELRDGKYYVDFDN 197
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
I+V++K GG ++DT+L++G++ ++ + P V+ AKI L+ + K + D + +
Sbjct: 198 IQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRI 257
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
D S + + L +E + +V +IK G NV++ QK I D+A H+L + + V+
Sbjct: 258 EDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQK-----GIDDMAQHYLSRAGIYAVR 312
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D++ + K ++++D L +A+ VE++ G ++G +NP + ++
Sbjct: 313 RVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVS 371
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
++VRG + V+DE RS+ D+L VV ++ A AGGGA E++ +L YA + G
Sbjct: 372 ILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGG-- 429
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
L + K+AD A+E IP LAENAGL+PI
Sbjct: 430 ----------------RQQLAIEKFAD---------------AIEEIPRALAENAGLDPI 458
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ +LR HA+G T GINV G I ++++ V++P+ V AI +TE IL+IDD
Sbjct: 459 DILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDD 518
Query: 836 IVNT 839
++ T
Sbjct: 519 VIAT 522
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 155/276 (56%), Gaps = 6/276 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D + + D S + + L +E + +V +IK G NV++ QK I D+A H+L +
Sbjct: 251 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQK-----GIDDMAQHYLSR 305
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K ++++D L +A+ VE++ G ++G +
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + ++++VRG + V+DE RS+ D+L VV ++ A AGGGA E++ +L YA
Sbjct: 366 NP-KAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYA 424
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
+ G FA A+E IP LAENAGL+PI + +LR HA+G T GINV G I
Sbjct: 425 QKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEI 484
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++++ V++P+ V AI +TE IL+IDD++
Sbjct: 485 EDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D NI AA A+++++R+SLGPRGMDKM+ S G++ ITNDG TILK+M+V HPAAKMM
Sbjct: 21 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMM 80
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 249 bits (635), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 163/513 (31%), Positives = 277/513 (53%), Gaps = 57/513 (11%)
Query: 342 ITLSTETVRSILKIDD----ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIH 397
IT T+ S +++D+ +LV+LSK+QD E GDGTT VV++A +LL+ A +L+ KGIH
Sbjct: 83 ITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIH 142
Query: 398 PTTISDAFQKAAAKCVEILTEMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAP 453
P I++ F +AA + L E I+ ++ R+ L+++A TSL SK+VS+ A
Sbjct: 143 PIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAE 202
Query: 454 IAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV--- 510
+AV+AV+ V++ R +VD IK+ ++GG++ D++L++G++ + ++ PK V
Sbjct: 203 MAVEAVINVMDKDR-KDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPK 261
Query: 511 ---EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVL 567
+ K+ ++ PPK HK+ +S ++ E+ ++ +KKAG +V+
Sbjct: 262 EGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVV 321
Query: 568 LVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS 627
+ Q D A H L + + V+ + +++E + + N R + + L +
Sbjct: 322 ICQW-----GFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGT 376
Query: 628 ADLVEEIPAGNS--RFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK 685
+ E G + R + I + +T+T VRGSNK+++DEA R+LHD+LCVVR LVK
Sbjct: 377 CSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVK 435
Query: 686 QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVS 745
++ GGGA E+ +SL +++ AD GID Y
Sbjct: 436 DSRVVYGGGAAEVTMSLAVSEEADKQRGIDQY---------------------------- 467
Query: 746 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNI 804
FR FAQAL+ IP+TLAEN+GL+PI T++ L+++ + + + G++ ++
Sbjct: 468 -----AFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDM 522
Query: 805 LEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
E VV P + I L+T+ R ILKID+++
Sbjct: 523 KELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 158/287 (55%), Gaps = 9/287 (3%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
P HK+ +S ++ E+ ++ +KKAG +V++ Q D
Sbjct: 276 FEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQW-----GFDDE 330
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS-- 194
A H L + + V+ + +++E + + N R + + L + + E G +
Sbjct: 331 ANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKD 390
Query: 195 RFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 254
R + I + +T+T VRGSNK+++DEA R+LHD+LCVVR LVK ++ GGGA E+
Sbjct: 391 RMLIIEQSKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVT 449
Query: 255 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TT 313
+SL +++ AD GID Y FR FAQAL+ IP+TLAEN+GL+PI T++ L+++ + + +
Sbjct: 450 MSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISN 509
Query: 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360
G++ ++ E VV P + I L+T+ R ILKID++++
Sbjct: 510 IGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVII 556
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 47/58 (81%)
Query: 27 RNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+ S+I AA++VA I+TSLGPRG+DK++ + +GE+TITNDGATIL QM + + AK++
Sbjct: 47 KKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLL 104
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 135/485 (27%), Positives = 253/485 (52%), Gaps = 45/485 (9%)
Query: 359 LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE 418
++E+S+ QD E GDGTTSV+I+AG +L AE L + +HPT + A++KA + L +
Sbjct: 68 MIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKK 127
Query: 419 MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD--TNVDLKDI 476
+S P+ ++R+ ++ +S+ +KV+S+ +SL IA+DAV K V + + +D+K
Sbjct: 128 ISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAV-KTVQFEENGRKEIDIKKY 186
Query: 477 KVIRKL-GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+ K+ GG +ED+ ++ G++ + + + ++ +I L+ + K + + +
Sbjct: 187 ARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEI 246
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ R+L+ E YI + + I + +V++ +K ISDLA H+L + + ++
Sbjct: 247 TREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEK-----GISDLAQHYLMRANITAIR 301
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRTL 654
+ + D + + R ++ + E + + A L+E G+ F I+ ++P +
Sbjct: 302 RVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KAC 360
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
T+++RG++K +L E R+L DA+ V R ++ L+ GGGA E+ ++ LT+ + ++G+
Sbjct: 361 TILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGV 420
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
+ + +RA+ AQALEVIP TL +N G +
Sbjct: 421 EQWPYRAV---------------------------------AQALEVIPRTLIQNCGAST 447
Query: 775 ISTVTELRNRHAQGET-TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
I +T LR +H Q T G+N G + ++ E + +PL V + ET +L+I
Sbjct: 448 IRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRI 507
Query: 834 DDIVN 838
DDIV+
Sbjct: 508 DDIVS 512
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 146/264 (55%), Gaps = 8/264 (3%)
Query: 98 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 157
R+L+ E YI + + I + +V++ +K ISDLA H+L + + ++ + + D
Sbjct: 254 RILQMEEEYIQQLCEDIIQLKPDVVITEK-----GISDLAQHYLMRANITAIRRVRKTDN 308
Query: 158 EFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGS 216
+ + R ++ + E + + A L+E G+ F I+ ++P + T+++RG+
Sbjct: 309 NRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KACTILLRGA 367
Query: 217 NKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRA 276
+K +L E R+L DA+ V R ++ L+ GGGA E+ ++ LT+ + ++G++ + +RA
Sbjct: 368 SKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRA 427
Query: 277 FAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET-TTGINVRKGAITNILEENVVQPL 335
AQALEVIP TL +N G + I +T LR +H Q T G+N G + ++ E + +PL
Sbjct: 428 VAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPL 487
Query: 336 LVSTSAITLSTETVRSILKIDDIL 359
V + ET +L+IDDI+
Sbjct: 488 AVKLQTYKTAVETAVLLLRIDDIV 511
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 26 IRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+++ NI AAK +AD IRT LGP+ M KM+ G + +TNDG IL+++ V HPAAK M
Sbjct: 10 VQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSM 68
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/521 (29%), Positives = 260/521 (49%), Gaps = 66/521 (12%)
Query: 335 LLVSTSAITLSTETVRSILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEA 387
L+V+++ T + +ILK+ D+ LV++S+AQD E GDGTTSV I+AG L++
Sbjct: 52 LIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKE 111
Query: 388 AEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT---LADRENLIKSAATSLNSKVV 444
A+ L +GI I ++KA + VE + E++ IT + RE L + A T+++SK++
Sbjct: 112 AKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLI 171
Query: 445 SQQASLLAPIAVDAVLKVVNPQRDTN-VDLKDIKVIRKLGGTVEDTELVDGLVFTQKSAN 503
A + VDAVL + D N +D K I + + GG +E++ ++G+ F +K+ +
Sbjct: 172 HNNADFFVKMCVDAVLSL-----DRNDLDDKLIGIKKIPGGAMEESLFINGVAF-KKTFS 225
Query: 504 VNG----PKRVEKAKIGL--IQFCISPPKTDMDHKVV-VSDYSAMDRVLKEERAYILNIV 556
G PK+ KI ++ + K + + +V V DY A ++ E I +
Sbjct: 226 YAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQA---IVDAEWQLIFEKL 282
Query: 557 KQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIAS 616
+Q+++ G N++L + I DLA F + + +D+ V + + ++
Sbjct: 283 RQVEETGANIVLS-----KLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQST 337
Query: 617 LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDA 676
PEHL + L EE+ G+ R+ G +T T+++RG + V+ E RSLHDA
Sbjct: 338 TSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ-AKTCTLLLRGGAEQVIAEVERSLHDA 396
Query: 677 LCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLK 736
+ +V+ ++ + ++AGGGA E+E+S C R
Sbjct: 397 IMIVKRALQNKLIVAGGGATEMEVS---------------KCLR---------------- 425
Query: 737 LTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINV 796
Y+ T++G AFA+ALEVIP L ENAG + I + +LR H++GE G+
Sbjct: 426 --DYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVF 483
Query: 797 RKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
I + + V +P LV +A+ +TE IL +D+ +
Sbjct: 484 ETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETI 524
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 141/270 (52%), Gaps = 9/270 (3%)
Query: 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 149
V DY A ++ E I ++Q+++ G N++L + I DLA F +
Sbjct: 264 VEDYQA---IVDAEWQLIFEKLRQVEETGANIVLS-----KLPIGDLATQFFADRNIFCA 315
Query: 150 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTL 209
+ +D+ V + + ++ PEHL + L EE+ G+ R+ G +T
Sbjct: 316 GRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ-AKTC 374
Query: 210 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 269
T+++RG + V+ E RSLHDA+ +V+ ++ + ++AGGGA E+E+S L Y+ T++G
Sbjct: 375 TLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGK 434
Query: 270 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329
AFA+ALEVIP L ENAG + I + +LR H++GE G+ I + +
Sbjct: 435 QQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAK 494
Query: 330 NVVQPLLVSTSAITLSTETVRSILKIDDIL 359
V +P LV +A+ +TE IL +D+ +
Sbjct: 495 FVWEPALVKINALNSATEATNLILSVDETI 524
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 42/56 (75%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI A AV +A++ +LGP G D +I SN + TI+NDGATILK ++V+HPAAK +
Sbjct: 28 SNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTL 83
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 249/505 (49%), Gaps = 66/505 (13%)
Query: 351 SILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403
+ILK+ D+ LV+++K+QD E GDGTTSV ++A L+ + + +G+HP I
Sbjct: 55 TILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIR 114
Query: 404 AFQKAAAKCVEILTEMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAV 459
AF+ A V + E++ + D R+ L K A T+L+SK++SQQ + A + VDAV
Sbjct: 115 AFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAV 174
Query: 460 LKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNG----PKRVEKAKI 515
+ + D + LK I + + GG +E+++LV G+ F +K+ + G PK+ I
Sbjct: 175 MML-----DDLLQLKMIGIKKVQGGALEESQLVAGVAF-KKTFSYAGFEMQPKKYHNPMI 228
Query: 516 GL--IQFCISPPKTDMDHKV-VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS 572
L ++ + K + + +V V DY A ++ E + + +++I +G V+L +
Sbjct: 229 ALLNVELELKAEKDNAEIRVHTVEDYQA---IVDAEWNILYDKLEKIHHSGAKVVLSKLP 285
Query: 573 ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVE 632
I D+A + + + ED++ S++ + L + E
Sbjct: 286 I-----GDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFE 340
Query: 633 EIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 692
E G R+ +G +T T+++RG + ++E RSLHDA+ +VR +K +++AG
Sbjct: 341 ETQIGGERYNFFTGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAG 399
Query: 693 GGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752
GGA E+ELS KY L Y+ T+ G
Sbjct: 400 GGAIEMELS----KY-----------------------------LRDYSRTIPGKQQLLI 426
Query: 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQP 812
A+A+ALE+IP L +NAG + + + +LR RHAQG G+++ I + E V +P
Sbjct: 427 GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEP 486
Query: 813 LLVSTSAITLSTETVRSILKIDDIV 837
+V +A+T ++E I+ +D+ +
Sbjct: 487 AMVRINALTAASEAACLIVSVDETI 511
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 137/270 (50%), Gaps = 9/270 (3%)
Query: 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 149
V DY A ++ E + + +++I +G V+L + I D+A + +
Sbjct: 251 VEDYQA---IVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFADRDMFCA 302
Query: 150 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTL 209
+ ED++ S++ + L + EE G R+ +G +T
Sbjct: 303 GRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPK-AKTC 361
Query: 210 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 269
T+++RG + ++E RSLHDA+ +VR +K +++AGGGA E+ELS L Y+ T+ G
Sbjct: 362 TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 421
Query: 270 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329
A+A+ALE+IP L +NAG + + + +LR RHAQG G+++ I + E
Sbjct: 422 QQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEA 481
Query: 330 NVVQPLLVSTSAITLSTETVRSILKIDDIL 359
V +P +V +A+T ++E I+ +D+ +
Sbjct: 482 FVWEPAMVRINALTAASEAACLIVSVDETI 511
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI A + +A+A+RT+LGPRGMDK+I G+ TI+NDGATILK ++V+HPAAK +
Sbjct: 15 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTL 70
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 243/485 (50%), Gaps = 50/485 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKG-IHPTTISDAFQKAAAKCVEIL 416
+LV +SK QD E GDGTTSV +++ LL AEKL+ + IHP TI + ++ A+A ++ L
Sbjct: 76 VLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDAL 135
Query: 417 TEMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
T+ + + RE+LI A T+L+SK++SQ A +A +A+L++ + +L
Sbjct: 136 TKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKG-----STNL 190
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHK 532
+ I++I+ LGG + D+ L +G + +K N N PKR+E AKI + + K + K
Sbjct: 191 EHIQIIKILGGKLSDSFLDEGFILAKKFGN-NQPKRIENAKILIANTTLDTDKVKIFGTK 249
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
V + + ++ K ER + N + +I K G N I R I D + +
Sbjct: 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTF-----INRQLIYDYPEQLFTDLGIN 304
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 652
++ + E +E + +++ D L D++EEI G F+K SG + G
Sbjct: 305 SIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCK-AGE 363
Query: 653 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 712
T+V+RG+ LDEA RSLHDAL V+ K+ + GGG E+ +S K DT
Sbjct: 364 ACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMS----KAVDT-- 417
Query: 713 GIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGL 772
A + G + AFA+AL +P LA+NAG
Sbjct: 418 ---------------------------EAQNIDGKKSLAVEAFARALRQLPTILADNAGF 450
Query: 773 NPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
+ V++LR+ G +T+G+++ G I ++ + +V+ + + ++ ++E +L+
Sbjct: 451 DSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLR 510
Query: 833 IDDIV 837
+D+I+
Sbjct: 511 VDNII 515
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 6/278 (2%)
Query: 82 KMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 141
K+ K V + + ++ K ER + N + +I K G N I R I D
Sbjct: 244 KIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTF-----INRQLIYDYPEQLF 298
Query: 142 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 201
+ + ++ + E +E + +++ D L D++EEI G F+K SG
Sbjct: 299 TDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSG 358
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
+ G T+V+RG+ LDEA RSLHDAL V+ K+ + GGG E+ +S +
Sbjct: 359 CK-AGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDT 417
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321
A + G + AFA+AL +P LA+NAG + V++LR+ G +T+G+++ G
Sbjct: 418 EAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNG 477
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
I ++ + +V+ + + ++ ++E +L++D+I+
Sbjct: 478 TIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 515
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 27 RNSNIGAAKAVADAIRTSLGPRGMDKMIQ-ASNGEVTITNDGATILKQMNVIHPAAKMM 84
R S A AV D ++++LGP+GMDK++Q AS+ +TNDGATILK + + +PAAK++
Sbjct: 19 RLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVL 77
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 142/488 (29%), Positives = 239/488 (48%), Gaps = 57/488 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV++S+ QD E GDGTTSV ++A LL AE L+ K IHP TI +++A + L
Sbjct: 70 VLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALL 129
Query: 418 EMST---PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + R++L+ A T+L+SK+++ +AV+AVL++ +L+
Sbjct: 130 NSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG-----NLE 184
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
I VI+KLGG++ D+ L +G + +K VN PKR+E AKI + + K + V
Sbjct: 185 AIHVIKKLGGSLADSYLDEGFLLDKK-IGVNQPKRIENAKILIANTGMDTDKIKIFGSRV 243
Query: 535 VSDYSAMDRVLKEERAYILNIVK---QIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
D +A +V + E A + + +I K G N I R I + V
Sbjct: 244 RVDSTA--KVAEIEHAEKEKMKEKVERILKHGINCF-----INRQLIYNYPEQLFGAAGV 296
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPE--HLSSADLVEEIPAGNSRFVKISGIQN 649
+ ++ + +E + ++ DH PE L S L+EE+ G + + SG+
Sbjct: 297 MAIEHADFVGVERLALVTGGEIASTFDH--PELVKLGSCKLIEEVMIGEDKLIHFSGVA- 353
Query: 650 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
G T+V+RG+ + +LDEA RSLHDALCV+ VK + GGG E+ L +A
Sbjct: 354 LGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEM-----LMAHA- 407
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
+T+ A G +A ++A+AL ++P +A+N
Sbjct: 408 ---------------------------VTQLASRTPGKEAVAMESYAKALRMLPTIIADN 440
Query: 770 AGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRS 829
AG + V +LR H++G+TT G+++++G I ++ + + V + + E
Sbjct: 441 AGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEV 500
Query: 830 ILKIDDIV 837
IL++D+I+
Sbjct: 501 ILRVDNII 508
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 111/192 (57%), Gaps = 5/192 (2%)
Query: 170 ASLDHFLPE--HLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 227
++ DH PE L S L+EE+ G + + SG+ G T+V+RG+ + +LDEA RS
Sbjct: 320 STFDH--PELVKLGSCKLIEEVMIGEDKLIHFSGVA-LGEACTIVLRGATQQILDEAERS 376
Query: 228 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLT 287
LHDALCV+ VK + GGG E+ ++ +T+ A G +A ++A+AL ++P
Sbjct: 377 LHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTI 436
Query: 288 LAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTE 347
+A+NAG + V +LR H++G+TT G+++++G I ++ + + V + + E
Sbjct: 437 IADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAE 496
Query: 348 TVRSILKIDDIL 359
IL++D+I+
Sbjct: 497 AAEVILRVDNII 508
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 27 RNSNIGAAKAVADAIRTSLGPRGMDKMIQAS--NGEVTITNDGATILKQMNVIHPAAKMM 84
R S+ A A+ D ++++LGP+GMDK++ +S + + +TNDGATILK + V +PAAK++
Sbjct: 12 RLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVL 71
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 134/496 (27%), Positives = 243/496 (48%), Gaps = 54/496 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L EL+ QD E GDGTTSVVI+A LL+ A++L+ + IHPT++ ++ A + V ++
Sbjct: 68 VLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIS 127
Query: 418 E-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVL--KVVNPQRDTNVDLK 474
E + R+ LI +A TS++SKV+ A + VDAVL K + + +
Sbjct: 128 ENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVN 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
I V++ G + ++ L++G + PKR+ AKI + F + K + +VV
Sbjct: 188 SINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVV 247
Query: 535 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594
++D +D++ + E +++I G NV+L I D+ + + + + V
Sbjct: 248 ITDPEKLDQIRQRESDITKERIQKILATGANVILTT-----GGIDDMCLKYFVEAGAMAV 302
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV---EEIPAGNSRFVKISGIQN-P 650
+ + + D++ + K +++L + E A ++ EE+ ++ I+N
Sbjct: 303 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 362
Query: 651 GRT-LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
RT +V++RG+N + DE RSLHDALCVV+ +++ ++++ GGGA E LS+ L YA
Sbjct: 363 ARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYAT 422
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
++ G ++ ++ FA++L VIP TLA N
Sbjct: 423 SM--------------GSREQLAIA-------------------EFARSLLVIPNTLAVN 449
Query: 770 AGLNPISTVTELRNRHAQGETT--------TGINVRKGAITNILEENVVQPLLVSTSAIT 821
A + V +LR H + + G+++ G + + V +P +V ++
Sbjct: 450 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLK 509
Query: 822 LSTETVRSILKIDDIV 837
+TE +IL+IDD++
Sbjct: 510 FATEAAITILRIDDLI 525
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 146/286 (51%), Gaps = 18/286 (6%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
+VV++D +D++ + E +++I G NV+L I D+ + + +
Sbjct: 245 QVVITDPEKLDQIRQRESDITKERIQKILATGANVILTT-----GGIDDMCLKYFVEAGA 299
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV---EEIPAGNSRFVKISGIQ 203
+ V+ + + D++ + K +++L + E A ++ EE+ ++ I+
Sbjct: 300 MAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIK 359
Query: 204 N-PGRT-LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
N RT +V++RG+N + DE RSLHDALCVV+ +++ ++++ GGGA E LS+ L
Sbjct: 360 NTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLEN 419
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT-------- 313
YA ++ + FA++L VIP TLA NA + V +LR H + +
Sbjct: 420 YATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 479
Query: 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G + + V +P +V ++ +TE +IL+IDD++
Sbjct: 480 IGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 47/59 (79%)
Query: 26 IRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
IR+ N+ AA ++A+ +++SLGP G+DKM+ G+VTITNDGATILK + V HPAAK++
Sbjct: 11 IRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVL 69
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 239/503 (47%), Gaps = 62/503 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ IHPTTI F+ A + + +
Sbjct: 82 ILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFIN 141
Query: 418 E-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVL--KVVNPQRDTNVDLK 474
E +ST + +E LI A TS++SK++ + + + VDA+L K N + + +K
Sbjct: 142 EVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVK 201
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA--KIGLIQFCISPPKTDMDHK 532
+ V++ G + ++ LV G A+ PKR+ KI + + + M +
Sbjct: 202 AVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQ 261
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
+ + D ++++ K E +L VK+I AG V+L K I DL + + K++
Sbjct: 262 INIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTK-----GIDDLCLKEFVEAKIM 316
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDH------FLPEHLSSADLVEEIPAGNSRFVKISG 646
V+ ++ED+ + + ++S+ + F +L D V + + + I G
Sbjct: 317 GVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKG 376
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
+ ++++RG+N LDE RSLHD+L VV+ ++ ++ GGG E L++ L
Sbjct: 377 TSKHSSS-SIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDN 435
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
+A TV G ++ ++ FA AL +IP TL
Sbjct: 436 FATTV--------------GSREQLAIA-------------------EFAAALLIIPKTL 462
Query: 767 AENAGLNPISTVTELRNRHAQGET------------TTGINVRKGAITNILEENVVQPLL 814
A NA + V +LR+ HA + G+++ +G I + + V++P +
Sbjct: 463 AVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTI 522
Query: 815 VSTSAITLSTETVRSILKIDDIV 837
++ + E +IL+ID ++
Sbjct: 523 SKVKSLKSALEACVAILRIDTMI 545
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 143/301 (47%), Gaps = 24/301 (7%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
+ A M ++ + D ++++ K E +L VK+I AG V+L K I DL
Sbjct: 251 LQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTK-----GIDDL 305
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDH------FLPEHLSSADLVEEIP 190
+ + K++ V+ ++ED+ + + ++S+ + F +L D V +
Sbjct: 306 CLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAK 365
Query: 191 AGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 250
+ + I G + ++++RG+N LDE RSLHD+L VV+ ++ ++ GGG
Sbjct: 366 FSDDECILIKGTSKHSSS-SIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGC 424
Query: 251 PEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG 310
E L++ L +A TV + FA AL +IP TLA NA + V +LR+ HA
Sbjct: 425 VEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAAS 484
Query: 311 ET------------TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
+ G+++ +G I + + V++P + ++ + E +IL+ID +
Sbjct: 485 QMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTM 544
Query: 359 L 359
+
Sbjct: 545 I 545
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
DIRN N+ A AVA+ +++SLGP G+DKM+ G+ T+TNDGATIL ++V HPA K++
Sbjct: 24 DIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKIL 83
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 135/545 (24%), Positives = 254/545 (46%), Gaps = 103/545 (18%)
Query: 359 LVELSKAQDIEAGDGTTSVVIVAGSLL-EAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++ELS+ QD E GDGTT+V+I+AG +L + A L+ K IHP I A +KA +E++
Sbjct: 78 MLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIK 137
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV-------VNPQRDTN 470
++S P+ + + + K S+ +K V + + +A+DAV V V + +
Sbjct: 138 QVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFE 197
Query: 471 VDLKDIKVIRKL-GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM 529
+D+K + K+ GG V D+ ++ G++ + + + +E ++ L+ + K +
Sbjct: 198 IDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257
Query: 530 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589
+ + +R+L+ E + + +QI +++ +K +SDLA H+L K
Sbjct: 258 QTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEK-----GVSDLAQHYLLKG 312
Query: 590 KVLVVKDIEREDIEFVCK----TLNTR-------------PIASLDHFLPEHLSSADLVE 632
V++ +++ D + + T+ R + ++ E+ S D +
Sbjct: 313 GCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCK 372
Query: 633 EIPAGN--------------------------SRFVKISG-------------IQNPGRT 653
E +G+ +RF KIS G+
Sbjct: 373 EPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKA 432
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+++RG +K +L+E R+L DA+ V R ++ +L GGGA E+ +S+KL + A + G
Sbjct: 433 CTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEG 492
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
I + ++A+ A A+E IP TL +NAG +
Sbjct: 493 IQQWPYQAV---------------------------------ADAMECIPRTLIQNAGGD 519
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
PI +++LR +HAQG TTGI+ KG I +++ + +P ++ ++ + E+ +L++
Sbjct: 520 PIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRV 579
Query: 834 DDIVN 838
DDIV+
Sbjct: 580 DDIVS 584
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 102/160 (63%)
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
+ T+++RG +K +L+E R+L DA+ V R ++ +L GGGA E+ +S+KL + A +
Sbjct: 431 KACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQL 490
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
GI + ++A A A+E IP TL +NAG +PI +++LR +HAQG TTGI+ KG I ++
Sbjct: 491 EGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDM 550
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366
+ + +P ++ ++ + E+ +L++DDI+ + K +
Sbjct: 551 VSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 590
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI AAKAVAD IRT LGP+ M KM+ G + +TNDG IL++++V HPAAK M
Sbjct: 23 SNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSM 78
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 230/489 (47%), Gaps = 51/489 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++ +++ AQD GDGTTS V++ G LL+ A+ + +G+HP I++ F+ A K ++ L
Sbjct: 68 LIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLE 127
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + DRE LI A TSL +KV ++ A +L VD++L + ++D +DL ++
Sbjct: 128 QVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI--KKQDEPIDLFMVE 184
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
++ + DT L+ GLV + + + KRVE A I + KT+++
Sbjct: 185 IMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKS 244
Query: 538 YSAMDRVLKEERAYILNIVKQI---KKAGCN------VLLVQKSILRDAISDLAIHFLDK 588
++++K ER +I + VK+I KK C V++ QK I ++ L K
Sbjct: 245 AEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQK-----GIDPFSLDALAK 299
Query: 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 648
++ ++ +R ++E + + SLD P+ L V E G +F I
Sbjct: 300 EGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCN 359
Query: 649 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 708
NP R++T++++G NK L + ++ D L V+ + ++ G GA E+ ++ L KY
Sbjct: 360 NP-RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYK 418
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAE 768
+V G RA + +AFA AL +IP LA+
Sbjct: 419 PSVKG------RAQLG---------------------------VQAFADALLIIPKVLAQ 445
Query: 769 NAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828
N+G + T+ +++ H++ G+++ G E + V + T
Sbjct: 446 NSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIAT 505
Query: 829 SILKIDDIV 837
+IL +D+I+
Sbjct: 506 NILLVDEIM 514
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 129/272 (47%), Gaps = 15/272 (5%)
Query: 97 DRVLKEERAYILNIVKQI---KKAGCN------VLLVQKSILRDAISDLAIHFLDKIKVL 147
++++K ER +I + VK+I KK C V++ QK I ++ L K ++
Sbjct: 249 EKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQK-----GIDPFSLDALAKEGII 303
Query: 148 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 207
++ +R ++E + + SLD P+ L V E G +F I NP R
Sbjct: 304 ALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNP-R 362
Query: 208 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 267
++T++++G NK L + ++ D L V+ + ++ G GA E+ ++ L KY +V
Sbjct: 363 SVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVK 422
Query: 268 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327
G +AFA AL +IP LA+N+G + T+ +++ H++ G+++ G
Sbjct: 423 GRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAA 482
Query: 328 EENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
E + V + T +IL +D+I+
Sbjct: 483 EAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 30/211 (14%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVV 89
NI AA+ + D +RT+LGP+G KM+ + G++ +T DG +L +M + HP A ++
Sbjct: 15 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 74
Query: 90 VSDYSAMD----------RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIH 139
D D +LK+ YI G + ++ + +A + A+
Sbjct: 75 AQDDITGDGTTSNVLIIGELLKQADLYI--------SEGLHPRIITEGF--EAAKEKALQ 124
Query: 140 FLDKIKVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSADLV---EEIPAGNSR 195
FL+++K V K+++RE + V +T L T+ A L L E + + L ++ P +
Sbjct: 125 FLEQVK--VSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPI-DLF 181
Query: 196 FVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 226
V+I +++ T T ++RG LVLD AR
Sbjct: 182 MVEIMEMKHKSETDTSLIRG---LVLDHGAR 209
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/489 (26%), Positives = 228/489 (46%), Gaps = 54/489 (11%)
Query: 366 QDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT- 424
QD GDGTT+VV + G LL A + + +G+HP I+D F+ A + ++ L E T
Sbjct: 83 QDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTN 142
Query: 425 -LADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483
DRE L++ A +SL +KV + +L PI DAVL V + Q D N+DL +++++
Sbjct: 143 LSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQAD-NLDLHMVEIMQMQH 201
Query: 484 GTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDR 543
+ +DT + GLV + + P RV+ A + ++ + KT+++ S D+
Sbjct: 202 LSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDK 261
Query: 544 VLKEERAYILNIVKQI---KKAGCN-------VLLVQKSILRDAISDLAIHFLDKIKVLV 593
+ ER ++ +K+I K C V++ QK I +++ K +L
Sbjct: 262 LAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQK-----GIDPMSLDVFAKHNILA 316
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ +R ++E + S++ P+ L + LV + G +F ++ +P ++
Sbjct: 317 LRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP-KS 375
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T++++GS L + ++ D L V ++K + +I G GA I LS
Sbjct: 376 CTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALS------------ 423
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
Y A + KL T +GI+ AFA+AL VIP TL +N+G +
Sbjct: 424 --RYLRSANMN-----------KLGAKGKTKTGIE-----AFAEALLVIPKTLVKNSGFD 465
Query: 774 PISTVT----ELRNRHAQGET-TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828
P+ + EL + ET G+++ G + E + V +AIT +T
Sbjct: 466 PLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIAS 525
Query: 829 SILKIDDIV 837
++L D+++
Sbjct: 526 NLLLCDELL 534
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 19/245 (7%)
Query: 128 ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVE 187
I + I +++ K +L ++ +R ++E + S++ P+ L + LV
Sbjct: 296 INQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVY 355
Query: 188 EIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247
+ G +F ++ +P ++ T++++GS L + ++ D L V ++K + +I G
Sbjct: 356 QETIGEEKFTYVTENTDP-KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPG 414
Query: 248 GGAPEIELSL--------KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299
GA I LS KL T +GI+A FA+AL VIP TL +N+G +P+
Sbjct: 415 AGAFYIALSRYLRSANMNKLGAKGKTKTGIEA-----FAEALLVIPKTLVKNSGFDPLDV 469
Query: 300 VT----ELRNRHAQGET-TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 354
+ EL + ET G+++ G + E + V +AIT +T ++L
Sbjct: 470 LAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLL 529
Query: 355 IDDIL 359
D++L
Sbjct: 530 CDELL 534
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAA 81
N+ +A+ + + T+LGP+G KM+ G + +T DG +L +M + P A
Sbjct: 22 NVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTA 73
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 148/571 (25%), Positives = 255/571 (44%), Gaps = 72/571 (12%)
Query: 291 NAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTE--T 348
NA I ++ +R H T+ G R I N L + ++++ A T+ E
Sbjct: 23 NADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGK-----IIITNDAATMLRELDI 77
Query: 349 VRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKA 408
V +K+ LV ++ Q I+ GDGT V+I+AG LL +EKL+ G+ I + A
Sbjct: 78 VHPAVKV---LVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMA 134
Query: 409 AAKCVEILTEMST-PIT-LADRENLIKSAATSLNSKVVSQQ--ASLLAPIAVDAVLKVVN 464
++ L EM IT D+ L+K ++SK + S L AV VL V
Sbjct: 135 RKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQ 194
Query: 465 PQRDT---NVDLKDIKVIRKLGGTVEDTELVDGLVFTQK-SANVNGPKRVEKAKIGLIQF 520
+ NVD I+V++ +GG++ ++ ++ G+VF ++ +V +K K+ +
Sbjct: 195 QAGEIPYFNVD--SIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTC 252
Query: 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISD 580
+ T+ V++ + M K E I ++K+I G ++ + +
Sbjct: 253 PLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGA-----GVGE 307
Query: 581 LAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSR 640
LA+H+L++ +LV+K + ++ +C+ P+ L PE L + V+ + G R
Sbjct: 308 LALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDR 367
Query: 641 FVKISGIQNP-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA--LIAGGGAPE 697
Q RT T+++RG+ + LD+ R++ D + V+ L+K L+ G GA E
Sbjct: 368 VTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATE 427
Query: 698 IELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQ 757
IEL ++TKY + G+ ++L++K FA
Sbjct: 428 IELISRITKYGERTPGL----------------LQLAIK-----------------QFAV 454
Query: 758 ALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT--------GINV---RKGAITNILE 806
A EV+P TLAE AGL+ + L H E G+++ + +I E
Sbjct: 455 AFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIRE 514
Query: 807 ENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
EN+ L AI ++TE ++L ID I+
Sbjct: 515 ENIYDMLATKKFAINVATEAATTVLSIDQII 545
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 139/299 (46%), Gaps = 32/299 (10%)
Query: 76 VIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISD 135
++H A +M+D K E I ++K+I G ++ + +
Sbjct: 266 LLHNAQEMLDFS-------------KGEEKQIDAMMKEIADMGVECIVAGA-----GVGE 307
Query: 136 LAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSR 195
LA+H+L++ +LV+K + ++ +C+ P+ L PE L + V+ + G R
Sbjct: 308 LALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDR 367
Query: 196 FVKISGIQNP-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA--LIAGGGAPE 252
Q RT T+++RG+ + LD+ R++ D + V+ L+K L+ G GA E
Sbjct: 368 VTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATE 427
Query: 253 IELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET 312
IEL ++TKY + G+ + FA A EV+P TLAE AGL+ + L H E
Sbjct: 428 IELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEP 487
Query: 313 TT--------GINV---RKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360
G+++ + +I EEN+ L AI ++TE ++L ID I++
Sbjct: 488 GAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIM 546
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 8/94 (8%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM----- 84
+I A + + TS+GP G +K+I G++ ITND AT+L++++++HPA K++
Sbjct: 31 SIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATE 90
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG 118
K+ + D + + +L E +LN+ +++ G
Sbjct: 91 QQKIDMGDGTNLVMILAGE---LLNVSEKLISMG 121
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 124/487 (25%), Positives = 230/487 (47%), Gaps = 53/487 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++V S Q+ E GDGT V++ AG+LLE AE+LL G+ + + + ++ A K EIL
Sbjct: 69 MIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILP 128
Query: 418 EMSTPITLADRENL--IKSAATSLNSKVVSQQAS---LLAPIAVDAVLKVVNPQRDTNVD 472
++ +NL + ++ L++ V+S+Q LA + A + + NVD
Sbjct: 129 DL----VCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVD 184
Query: 473 LKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHK 532
+I+V + LG V + ++ G+VF +++ V+ AKI + T+
Sbjct: 185 --NIRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGT 240
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
V++ + K E + VK I G NV++ + +D+A+H+ +K ++
Sbjct: 241 VLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANKYNIM 295
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 652
+V+ + D+ +CKT+ + L+ + E + D V G+++ V + G
Sbjct: 296 LVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGA 355
Query: 653 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 712
T+V+RGS ++D+ R++ D + + L + + L+ GGGA EIEL+ ++T Y +T
Sbjct: 356 ISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGET-- 413
Query: 713 GIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGL 772
G++ Y + FA+A E IP LAEN+G+
Sbjct: 414 -------------------------------CPGLEQYAIKKFAEAFEAIPRALAENSGV 442
Query: 773 NPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSI 830
+++L H +G G+++ A+ ++LE V+ L AI L+T ++
Sbjct: 443 KANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTV 502
Query: 831 LKIDDIV 837
L++D I+
Sbjct: 503 LRVDQII 509
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 136/252 (53%), Gaps = 7/252 (2%)
Query: 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIA 170
VK I G NV++ + +D+A+H+ +K +++V+ + D+ +CKT+ +
Sbjct: 264 VKAIADTGANVVVTGGRV-----ADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALP 318
Query: 171 SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHD 230
L+ + E + D V G+++ V + G T+V+RGS ++D+ R++ D
Sbjct: 319 RLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDD 378
Query: 231 ALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAE 290
+ + L + + L+ GGGA EIEL+ ++T Y +T G++ Y + FA+A E IP LAE
Sbjct: 379 GVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAE 438
Query: 291 NAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTET 348
N+G+ +++L H +G G+++ A+ ++LE V+ L AI L+T
Sbjct: 439 NSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNA 498
Query: 349 VRSILKIDDILV 360
++L++D I++
Sbjct: 499 AVTVLRVDQIIM 510
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
NI A K +A RT+ GP GM+KM+ ++ +TND ATIL+++ V HPAAKM+
Sbjct: 16 NIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMI 70
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 494 GLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYIL 553
G+V ++ + P V+ AKI LI + KT+++ KV +SD S + L +E
Sbjct: 3 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFK 62
Query: 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 613
+V++IKK+G NV+L QK I D+A H+L K + V+ +++ D+E + K +
Sbjct: 63 QMVEKIKKSGANVVLCQK-----GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKI 117
Query: 614 IASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 649
+ LD P L A+ VEE G+ R + G +N
Sbjct: 118 VTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K +
Sbjct: 41 KVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK-----GIDDVAQHYLAKEGI 95
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
V+ +++ D+E + K + + LD P L A+ VEE G+ R + G +N
Sbjct: 96 YAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551
++G++ ++ + P V+ AKI L+ + K + D + + D S + + L +E
Sbjct: 1 MNGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENM 60
Query: 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611
+ +V +IK G NV++ QK I D+A H+L + + V+ +++ D++ + K
Sbjct: 61 LREMVDKIKSVGANVVITQK-----GIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGA 115
Query: 612 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 649
++++D L +A+ VE++ G ++G +N
Sbjct: 116 SIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGSKN 153
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D + + D S + + L +E + +V +IK G NV++ QK I D+A H+L +
Sbjct: 38 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQK-----GIDDMAQHYLSR 92
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K ++++D L +A+ VE++ G ++G +
Sbjct: 93 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGSK 152
Query: 204 N 204
N
Sbjct: 153 N 153
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
A+ADA++ +LGP+G + +++ G TITNDG +I K++ + P K+
Sbjct: 21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKI 68
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G A E+EL + + D V A ++AGGG ++ + L + + G
Sbjct: 375 AVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDEL--KLEGD 432
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
+A ALE +A N+GL P ++RN A G+N + G ++L
Sbjct: 433 EATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPA----GHGLNAQTGVYEDLLAA 488
Query: 808 NVVQPLLVSTSAI 820
V P+ V+ SA+
Sbjct: 489 GVADPVKVTRSAL 501
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEIL 416
+++ E++K D AGDGTT+ ++A +L+ + + G +P + +KA K E L
Sbjct: 71 ELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETL 130
Query: 417 TEMSTPITLADRENLIKSAATSLNSKVVS 445
+ + + +E + +AA S + +
Sbjct: 131 LKGAKEVET--KEQIAATAAISAGDQSIG 157
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVL 545
+ED+ ++ G++ + + + ++ +I L+ + K + + ++ R+L
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 546 KEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 605
+ E YI + + I + +V++ +K ISDLA H+L + V ++ + + D +
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEK-----GISDLAQHYLMRANVTAIRRVRKTDNNRI 115
Query: 606 CKTLNTRPIASLDHFLPEHLSSAD------LVEEIPAGNSRFVKISGIQNPGRTLTVVVR 659
+ R ++ PE L D L+E G+ F I+ ++P + T+++R
Sbjct: 116 ARACGARIVSR-----PEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLR 169
Query: 660 GSN 662
G++
Sbjct: 170 GAS 172
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 98 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 157
R+L+ E YI + + I + +V++ +K ISDLA H+L + V ++ + + D
Sbjct: 58 RILQMEEEYIHQLCEDIIQLKPDVVITEK-----GISDLAQHYLMRANVTAIRRVRKTDN 112
Query: 158 EFVCKTLNTRPIASLDHFLPEHLSSAD------LVEEIPAGNSRFVKISGIQNPGRTLTV 211
+ + R ++ PE L D L+E G+ F I+ ++P + T+
Sbjct: 113 NRIARACGARIVSR-----PEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTI 166
Query: 212 VVRGSN 217
++RG++
Sbjct: 167 LLRGAS 172
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 107/483 (22%), Positives = 204/483 (42%), Gaps = 80/483 (16%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +++ K + G +P + +KA VE + ++ P
Sbjct: 78 SKTNDV-AGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ DR+ + + A S N V + L+A DA+ KV ++ + +++ K +
Sbjct: 137 VE--DRKAIEEVATISANDPEVGK---LIA----DAMEKV---GKEGIITVEESKSL--- 181
Query: 483 GGTVEDTEL--VDGLVFTQKSANVNGPKRVEKAKIGLIQ-FCISPPKTDMDHKVVVSDYS 539
+TEL V+G F + G I + ++ P+T + V+ D
Sbjct: 182 -----ETELKFVEGYQFDK----------------GYISPYFVTNPET---MEAVLEDAF 217
Query: 540 AM--DRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL-DKIKVLVVK- 595
+ ++ + R +L I++Q+ + G +L++ + + +A++ L ++ L + V VK
Sbjct: 218 ILIVEKKVSNVR-ELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKA 276
Query: 596 ----DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 651
D +E ++ + I+ F E+ + + L G + V+I+
Sbjct: 277 PGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSML------GRAERVRIT------ 324
Query: 652 RTLTVVVRGSNKLVLDEA-----ARSLH--DALCVVRCLVKQRALIAG-------GGAPE 697
+ T +V G K EA + L D+ L ++ A +AG G A E
Sbjct: 325 KDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATE 384
Query: 698 IELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQ 757
EL K ++ D ++ A ++ GGG + + + + G +A + +
Sbjct: 385 TELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRR 444
Query: 758 ALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVST 817
ALE +AENAG V ++ G N G +++E +V P V+
Sbjct: 445 ALEEPARQIAENAGYEGSVIVQQILAETKN--PRYGFNAATGEFVDMVEAGIVDPAKVTR 502
Query: 818 SAI 820
SA+
Sbjct: 503 SAL 505
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
AVA+A++ +LGPRG + +++ G TIT DG T+ K++ +
Sbjct: 21 AVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVEL 61
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 221 LDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQA 280
L E DAL R V++ ++ GGG + + + + G +A + +A
Sbjct: 387 LKEKKHRFEDALNATRAAVEE-GIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRA 445
Query: 281 LEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTS 340
LE +AENAG V ++ G N G +++E +V P V+ S
Sbjct: 446 LEEPARQIAENAGYEGSVIVQQILAETKN--PRYGFNAATGEFVDMVEAGIVDPAKVTRS 503
Query: 341 AI 342
A+
Sbjct: 504 AL 505
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 108/479 (22%), Positives = 195/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + AD GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNADQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 206 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT----K 261
G + V + ++ + E + DAL R V++ ++AGGG I ++ KL +
Sbjct: 373 GGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE-GVVAGGGVALIRVASKLADLRGQ 431
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321
AD GI RA L I L N G P + + N G+ G N
Sbjct: 432 NADQNVGIK-VALRAMEAPLRQIVL----NCGEEP----SVVANTVKGGDGNYGYNAATE 482
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364
N+++ ++ P V+ SA+ + ++ + ++ +L K
Sbjct: 483 EYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 525
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G A E+EL + + D V A ++AGGG ++ + L + + G
Sbjct: 333 AVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDEL--KLEGD 390
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
+A ALE +A N+GL P ++RN A G+N + G ++L
Sbjct: 391 EATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPA----GHGLNAQTGVYEDLLAA 446
Query: 808 NVVQPLLVSTSAI 820
V P+ V+ SA+
Sbjct: 447 GVADPVKVTRSAL 459
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEIL 416
+++ E++K D AGDGTT+ ++A +L+ + + G +P + +KA K E L
Sbjct: 29 ELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETL 88
Query: 417 TEMSTPITLADRENLIKSAATSLNSKVVS 445
+ + + +E + +AA S + +
Sbjct: 89 LKGAKEVET--KEQIAATAAISAGDQSIG 115
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNKDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 79 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 137
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 138 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 180
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 181 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 233
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 234 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 283
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 284 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 337
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 338 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 397
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 398 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 456
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 457 ----NCGEKP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 507
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
D + A ++AGGG I ++ KL + D GI RA L I L
Sbjct: 397 DALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 107/479 (22%), Positives = 194/479 (40%), Gaps = 68/479 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 137 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 179
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 180 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 232
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK-----D 596
L +++ + KAG +L++ + + +A++ L ++ + I KV VK D
Sbjct: 233 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD 282
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG-----IQNPG 651
+ ++ + I+ E + DL G ++ V I+ I G
Sbjct: 283 RRKAMLQDIATLTGGTVISEEIGMELEKATLEDL------GQAKRVVINKDTTTIIDGVG 336
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCV---VRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ R + E A S +D + V L A+I G A E+E+ K +
Sbjct: 337 EEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVE 396
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADTVSGIDAYCFRAFAQALEVIPL 764
+ A ++AGGG I ++ KL + AD GI RA L I L
Sbjct: 397 AALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNADQNVGIK-VALRAMEAPLRQIVL 455
Query: 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
N G P + + N G+ G N N+++ ++ P V+ SA+ +
Sbjct: 456 ----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYA 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 79 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP 137
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +SK ++Q ++ A + + V K++ D V + + +
Sbjct: 138 CS---------------DSKAIAQVGTISAN-SDETVGKLIAEAMD-KVGKEGVITVEDG 180
Query: 483 GGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMD 542
G ++ ++V+G+ F + + P + K + G ++ SP D K +S+ M
Sbjct: 181 TGLQDELDVVEGMQFDRGYLS---PYFINKPETGAVELE-SPFILLADKK--ISNIREM- 233
Query: 543 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI-KVLVVK 595
L +++ + KAG +L++ + + +A++ L ++ + I KV VK
Sbjct: 234 ----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVK 277
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 24 TDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+D R+ + +ADA++ +LGP+G + +I S G IT DG ++ K++ +
Sbjct: 10 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 361 ELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMS 420
E++ + EAGDGTT+ ++A +++ K + G++P + A AK VE + +
Sbjct: 76 EVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAA 135
Query: 421 TPI 423
P+
Sbjct: 136 RPV 138
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I GG EIE+ + + D ++ A ++ GGG ++ + L + S
Sbjct: 377 AVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQ 436
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
DA +ALE +AENAG++ ++R + G N + ++ +
Sbjct: 437 DA-GIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS---DKAFGFNAQTEEYGDMFKF 492
Query: 808 NVVQPLLVSTSAI 820
V+ P V +A+
Sbjct: 493 GVIDPAKVVRTAL 505
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 79 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 137
Query: 423 ITLADRENLIKSAATSLNS 441
+ D + + + S NS
Sbjct: 138 CS--DSKAIAQVGTISANS 154
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADT 743
A+I G A E+E+ K + D + A ++AGGG I ++ KL + D
Sbjct: 377 AVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQ 436
Query: 744 VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 803
GI RA L I L N G P + + N G+ G N N
Sbjct: 437 NVGIK-VALRAMEAPLRQIVL----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGN 487
Query: 804 ILEENVVQPLLVSTSAITLS 823
+++ ++ P V+ SA+ +
Sbjct: 488 MIDMGILDPTKVTRSALQYA 507
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNS 441
+ D + + + S NS
Sbjct: 137 CS--DSKAIAQVGTISANS 153
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADT 743
A+I G A E+E+ K + D + A ++AGGG I ++ KL + D
Sbjct: 376 AVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQ 435
Query: 744 VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 803
GI RA L I L N G P + + N G+ G N N
Sbjct: 436 NVGIK-VALRAMEAPLRQIVL----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGN 486
Query: 804 ILEENVVQPLLVSTSAITLS 823
+++ ++ P V+ SA+ +
Sbjct: 487 MIDMGILDPTKVTRSALQYA 506
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNS 441
+ D + + + S NS
Sbjct: 137 CS--DSKAIAQVGTISANS 153
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
+ADA++ +LGP+G + ++ S G TIT DG ++ +++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLT----KYADT 743
A+I G A E+E+ K + D + A ++AGGG I ++ KL + D
Sbjct: 376 AVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQ 435
Query: 744 VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 803
GI RA L I L N G P + + N G+ G N N
Sbjct: 436 NVGIK-VALRAMEAPLRQIVL----NCGEEP----SVVANTVKGGDGNYGYNAATEEYGN 486
Query: 804 ILEENVVQPLLVSTSAITLS 823
+++ ++ P V+ SA+ +
Sbjct: 487 MIDMGILDPTKVTRSALQYA 506
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLL 568
R + K+ LIQ C+S K + H +S + ++L E +A +KKAG +
Sbjct: 60 RGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKA--------VKKAGVGIEG 111
Query: 569 VQKSILRD 576
Q +LRD
Sbjct: 112 DQWKLLRD 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,949,099
Number of Sequences: 62578
Number of extensions: 824572
Number of successful extensions: 2653
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 222
length of query: 841
length of database: 14,973,337
effective HSP length: 107
effective length of query: 734
effective length of database: 8,277,491
effective search space: 6075678394
effective search space used: 6075678394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)