Query psy8873
Match_columns 841
No_of_seqs 385 out of 2976
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:32:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02342 chap_CCT_delta T-com 100.0 1E-94 2.2E-99 837.1 57.4 453 354-839 63-516 (517)
2 TIGR02339 thermosome_arch ther 100.0 3.3E-93 7.2E-98 826.6 56.4 443 358-839 74-519 (519)
3 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.6E-92 3.5E-97 820.8 57.0 454 353-839 61-515 (515)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 6.5E-92 1.4E-96 812.4 58.6 446 354-840 70-526 (531)
5 TIGR02344 chap_CCT_gamma T-com 100.0 3.1E-92 6.8E-97 819.5 55.9 444 358-840 74-522 (525)
6 cd03335 TCP1_alpha TCP-1 (CTT 100.0 6.7E-92 1.4E-96 816.3 57.3 446 356-840 64-526 (527)
7 TIGR02343 chap_CCT_epsi T-comp 100.0 8.3E-92 1.8E-96 813.7 57.5 443 357-839 84-531 (532)
8 cd03343 cpn60 cpn60 chaperonin 100.0 2.5E-91 5.3E-96 812.1 57.0 449 353-840 68-517 (517)
9 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.9E-91 6.4E-96 810.7 57.2 445 354-838 77-526 (526)
10 PTZ00212 T-complex protein 1 s 100.0 4.9E-91 1.1E-95 808.4 57.7 441 355-840 82-526 (533)
11 cd03336 TCP1_beta TCP-1 (CTT o 100.0 6.8E-91 1.5E-95 805.2 58.7 441 355-840 70-514 (517)
12 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.6E-90 3.5E-95 804.6 57.0 440 357-840 73-520 (522)
13 TIGR02341 chap_CCT_beta T-comp 100.0 4.1E-90 8.8E-95 797.3 57.9 439 358-841 74-516 (519)
14 TIGR02340 chap_CCT_alpha T-com 100.0 1.2E-89 2.6E-94 798.1 58.3 446 356-840 68-530 (536)
15 TIGR02345 chap_CCT_eta T-compl 100.0 1.5E-89 3.3E-94 794.9 55.1 445 353-840 70-520 (522)
16 TIGR02346 chap_CCT_theta T-com 100.0 2.9E-88 6.4E-93 783.9 57.7 444 355-840 73-520 (531)
17 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.3E-88 2.7E-93 779.3 51.7 409 362-840 74-483 (484)
18 KOG0358|consensus 100.0 7.2E-90 1.6E-94 704.1 34.6 441 366-839 92-533 (534)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.7E-86 5.8E-91 760.2 49.9 401 358-838 74-479 (480)
20 cd00309 chaperonin_type_I_II c 100.0 2.4E-83 5.2E-88 736.8 50.7 399 358-838 66-464 (464)
21 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.4E-83 1.4E-87 730.8 51.7 406 354-839 62-471 (472)
22 KOG0361|consensus 100.0 3.7E-82 7.9E-87 648.5 33.6 478 312-839 38-522 (543)
23 COG0459 GroL Chaperonin GroEL 100.0 8.1E-80 1.8E-84 700.1 47.7 433 361-840 72-514 (524)
24 PRK12849 groEL chaperonin GroE 100.0 3.7E-79 8E-84 705.0 49.9 394 358-840 72-523 (542)
25 PRK00013 groEL chaperonin GroE 100.0 6.6E-79 1.4E-83 702.9 50.1 395 358-839 72-523 (542)
26 PRK12852 groEL chaperonin GroE 100.0 3.4E-78 7.3E-83 700.3 49.0 395 358-840 73-525 (545)
27 PTZ00114 Heat shock protein 60 100.0 8.1E-78 1.7E-82 697.6 50.1 395 358-839 84-539 (555)
28 cd03344 GroEL GroEL_like type 100.0 9.2E-78 2E-82 692.0 49.6 392 358-838 70-519 (520)
29 PRK12851 groEL chaperonin GroE 100.0 1.5E-77 3.3E-82 692.4 49.0 395 358-840 73-524 (541)
30 PRK12850 groEL chaperonin GroE 100.0 1.7E-77 3.6E-82 692.5 48.9 395 358-840 73-524 (544)
31 CHL00093 groEL chaperonin GroE 100.0 1.2E-77 2.7E-82 693.2 45.4 399 358-840 72-525 (529)
32 TIGR02348 GroEL chaperonin Gro 100.0 3.9E-77 8.5E-82 688.3 49.1 393 358-839 71-521 (524)
33 PLN03167 Chaperonin-60 beta su 100.0 3.6E-76 7.7E-81 683.7 43.5 402 358-840 128-581 (600)
34 PRK14104 chaperonin GroEL; Pro 100.0 1.9E-75 4.2E-80 674.7 47.8 395 358-840 73-525 (546)
35 KOG0363|consensus 100.0 3.8E-75 8.3E-80 593.1 35.3 460 335-840 56-519 (527)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 5.2E-74 1.1E-78 666.8 46.4 477 312-841 7-485 (485)
37 KOG0362|consensus 100.0 1.3E-73 2.8E-78 605.7 38.7 477 310-840 42-521 (537)
38 KOG0364|consensus 100.0 4.4E-73 9.6E-78 591.5 25.0 450 350-840 69-521 (527)
39 KOG0361|consensus 100.0 7.2E-72 1.6E-76 572.7 21.3 347 19-371 14-532 (543)
40 KOG0360|consensus 100.0 5.7E-70 1.2E-74 573.7 25.2 481 312-838 37-534 (545)
41 KOG0359|consensus 100.0 6.4E-66 1.4E-70 537.1 28.3 467 324-839 43-514 (520)
42 KOG0363|consensus 100.0 9.2E-62 2E-66 495.2 23.5 346 15-366 5-523 (527)
43 KOG0362|consensus 100.0 2.2E-59 4.7E-64 497.4 23.6 348 9-362 6-521 (537)
44 KOG0357|consensus 100.0 1.8E-55 3.9E-60 446.3 17.9 335 19-361 22-395 (400)
45 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.8E-54 3.9E-59 503.1 26.6 267 88-361 215-483 (485)
46 KOG0360|consensus 100.0 2.7E-54 5.9E-59 455.1 20.8 342 19-367 13-541 (545)
47 KOG0358|consensus 100.0 5.8E-54 1.3E-58 440.2 21.7 336 23-360 194-532 (534)
48 KOG0364|consensus 100.0 1.5E-54 3.2E-59 452.8 17.2 339 19-363 13-522 (527)
49 KOG0357|consensus 100.0 2.3E-53 5.1E-58 430.9 19.2 321 353-839 72-395 (400)
50 TIGR02342 chap_CCT_delta T-com 100.0 5.7E-53 1.2E-57 488.9 24.9 286 74-360 230-515 (517)
51 cd03338 TCP1_delta TCP-1 (CTT 100.0 9.6E-53 2.1E-57 488.2 25.6 286 74-360 229-514 (515)
52 PTZ00212 T-complex protein 1 s 100.0 1.2E-51 2.6E-56 479.0 26.0 273 85-363 255-527 (533)
53 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.7E-51 3.8E-56 476.5 27.2 273 85-363 243-515 (517)
54 TIGR02344 chap_CCT_gamma T-com 100.0 1.6E-51 3.4E-56 478.7 26.5 273 85-363 249-523 (525)
55 TIGR02339 thermosome_arch ther 100.0 2.2E-51 4.8E-56 476.8 26.2 270 85-360 249-518 (519)
56 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.7E-51 3.7E-56 478.0 25.3 281 73-360 243-526 (526)
57 cd03343 cpn60 cpn60 chaperonin 100.0 2.9E-51 6.2E-56 476.5 26.5 270 85-360 246-515 (517)
58 TIGR02347 chap_CCT_zeta T-comp 100.0 6.6E-51 1.4E-55 471.0 26.9 273 85-363 245-527 (531)
59 TIGR02341 chap_CCT_beta T-comp 100.0 1.7E-50 3.6E-55 467.5 27.5 273 85-363 244-516 (519)
60 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9.1E-51 2E-55 472.0 25.4 271 85-361 241-525 (527)
61 TIGR02343 chap_CCT_epsi T-comp 100.0 1.3E-50 2.8E-55 469.7 25.9 280 74-360 248-530 (532)
62 KOG0356|consensus 100.0 2.7E-49 5.9E-54 427.5 31.0 395 366-839 94-536 (550)
63 TIGR02346 chap_CCT_theta T-com 100.0 4.2E-50 9E-55 465.4 26.3 277 85-366 246-524 (531)
64 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.2E-49 2.7E-54 462.5 28.2 269 87-361 250-519 (522)
65 TIGR02340 chap_CCT_alpha T-com 100.0 3.1E-49 6.7E-54 459.7 26.8 273 85-363 245-531 (536)
66 TIGR02345 chap_CCT_eta T-compl 100.0 8.2E-49 1.8E-53 454.7 28.3 270 86-361 250-519 (522)
67 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2E-47 4.3E-52 438.8 23.0 337 19-361 6-482 (484)
68 COG0459 GroL Chaperonin GroEL 100.0 1.7E-46 3.6E-51 427.5 22.6 274 85-365 236-517 (524)
69 cd03341 TCP1_theta TCP-1 (CTT 100.0 2E-46 4.4E-51 429.5 21.8 334 22-360 5-470 (472)
70 KOG0359|consensus 100.0 1.8E-46 3.9E-51 391.8 18.2 333 21-361 13-514 (520)
71 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.1E-45 2.4E-50 424.3 21.8 336 19-360 10-479 (480)
72 PRK12849 groEL chaperonin GroE 100.0 8.8E-45 1.9E-49 419.3 25.6 343 17-374 2-535 (542)
73 PRK12852 groEL chaperonin GroE 100.0 2.1E-44 4.6E-49 418.1 26.0 335 17-365 3-528 (545)
74 PRK00013 groEL chaperonin GroE 100.0 2E-44 4.4E-49 416.3 24.6 343 17-373 2-537 (542)
75 PRK12850 groEL chaperonin GroE 100.0 7.2E-44 1.6E-48 412.5 25.1 334 17-365 3-527 (544)
76 cd00309 chaperonin_type_I_II c 100.0 1.4E-43 3E-48 407.4 23.6 336 19-360 2-464 (464)
77 cd03344 GroEL GroEL_like type 100.0 1.6E-43 3.6E-48 407.9 23.2 328 18-360 1-519 (520)
78 PTZ00114 Heat shock protein 60 100.0 3.8E-43 8.2E-48 407.9 25.6 338 16-366 13-544 (555)
79 PRK12851 groEL chaperonin GroE 100.0 2.4E-43 5.2E-48 407.9 23.6 334 17-365 3-527 (541)
80 PRK14104 chaperonin GroEL; Pro 100.0 9.7E-43 2.1E-47 402.7 24.7 336 18-368 4-531 (546)
81 CHL00093 groEL chaperonin GroE 100.0 6E-43 1.3E-47 404.6 22.7 249 104-363 230-526 (529)
82 TIGR02348 GroEL chaperonin Gro 100.0 1.3E-42 2.9E-47 401.2 24.2 329 18-361 2-521 (524)
83 PLN03167 Chaperonin-60 beta su 100.0 4.9E-42 1.1E-46 398.7 20.1 344 16-364 55-583 (600)
84 cd03334 Fab1_TCP TCP-1 like do 100.0 7.5E-38 1.6E-42 330.1 26.6 234 443-689 15-256 (261)
85 cd03333 chaperonin_like chaper 100.0 1.5E-33 3.3E-38 290.0 24.4 208 429-686 2-209 (209)
86 KOG0356|consensus 100.0 2.7E-32 5.8E-37 295.9 17.3 351 6-366 5-541 (550)
87 cd03334 Fab1_TCP TCP-1 like do 99.9 1.3E-24 2.8E-29 229.5 17.2 149 91-245 103-257 (261)
88 KOG0230|consensus 99.8 8E-21 1.7E-25 225.7 16.2 239 445-696 331-576 (1598)
89 cd03333 chaperonin_like chaper 99.8 1.8E-18 3.9E-23 178.1 13.0 115 121-241 95-209 (209)
90 KOG0230|consensus 99.6 8.8E-15 1.9E-19 175.0 11.7 175 73-253 395-578 (1598)
91 PF01248 Ribosomal_L7Ae: Ribos 67.8 10 0.00022 33.3 5.0 57 108-167 21-77 (95)
92 PRK13600 putative ribosomal pr 67.4 14 0.0003 32.0 5.4 54 107-161 18-71 (84)
93 PRK04175 rpl7ae 50S ribosomal 55.2 27 0.00059 32.5 5.6 53 111-166 39-91 (122)
94 PRK13602 putative ribosomal pr 53.5 31 0.00067 29.7 5.2 55 109-167 18-72 (82)
95 TIGR03677 rpl7ae 50S ribosomal 52.1 32 0.0007 31.7 5.5 53 111-166 35-87 (117)
96 COG1358 RPL8A Ribosomal protei 51.9 35 0.00077 31.4 5.6 53 109-161 34-86 (116)
97 PF01248 Ribosomal_L7Ae: Ribos 51.5 28 0.0006 30.5 4.9 57 553-612 21-77 (95)
98 PRK13601 putative L7Ae-like ri 46.6 47 0.001 28.6 5.2 54 110-167 16-69 (82)
99 PRK07714 hypothetical protein; 46.3 50 0.0011 29.5 5.7 53 111-167 27-79 (100)
100 PRK06683 hypothetical protein; 46.2 45 0.00097 28.7 5.1 55 110-168 19-73 (82)
101 PF02603 Hpr_kinase_N: HPr Ser 42.0 25 0.00055 32.9 3.2 96 45-153 18-113 (127)
102 PRK13600 putative ribosomal pr 39.7 80 0.0017 27.3 5.6 55 552-607 18-72 (84)
103 COG1433 Uncharacterized conser 37.4 76 0.0017 29.5 5.5 40 110-155 57-96 (121)
104 PRK01018 50S ribosomal protein 37.4 79 0.0017 28.2 5.5 53 110-166 24-77 (99)
105 COG0796 MurI Glutamate racemas 36.6 1.5E+02 0.0033 31.5 8.3 85 67-164 17-108 (269)
106 PF02579 Nitro_FeMo-Co: Dinitr 35.4 66 0.0014 27.7 4.7 41 112-159 47-87 (94)
107 COG1358 RPL8A Ribosomal protei 34.5 88 0.0019 28.9 5.4 53 554-606 34-86 (116)
108 PTZ00106 60S ribosomal protein 32.2 89 0.0019 28.4 5.0 53 110-166 33-86 (108)
109 PRK13602 putative ribosomal pr 31.8 1.1E+02 0.0025 26.2 5.3 55 554-612 18-72 (82)
110 COG1433 Uncharacterized conser 31.1 1.9E+02 0.004 27.0 6.9 51 555-611 57-107 (121)
111 TIGR03677 rpl7ae 50S ribosomal 30.9 1.2E+02 0.0025 28.1 5.6 54 555-611 34-87 (117)
112 PRK05583 ribosomal protein L7A 30.2 1.1E+02 0.0024 27.6 5.2 53 111-167 26-78 (104)
113 PRK07283 hypothetical protein; 29.9 1.2E+02 0.0026 26.9 5.4 52 111-166 27-78 (98)
114 PF10686 DUF2493: Protein of u 29.8 1.4E+02 0.003 24.9 5.3 48 105-153 18-65 (71)
115 cd00851 MTH1175 This uncharact 29.5 70 0.0015 28.1 3.9 44 110-160 55-98 (103)
116 PRK04175 rpl7ae 50S ribosomal 29.4 1.2E+02 0.0027 28.1 5.6 54 555-611 38-91 (122)
117 PRK07714 hypothetical protein; 28.2 1.6E+02 0.0034 26.3 5.9 54 555-612 26-79 (100)
118 PF02579 Nitro_FeMo-Co: Dinitr 27.2 2E+02 0.0043 24.6 6.4 37 556-598 46-82 (94)
119 cd00851 MTH1175 This uncharact 27.2 1.3E+02 0.0029 26.3 5.3 38 555-598 55-92 (103)
120 PF00205 TPP_enzyme_M: Thiamin 25.9 85 0.0018 29.4 4.0 44 107-150 1-44 (137)
121 PF04315 DUF462: Protein of un 25.2 1.2E+02 0.0027 29.4 4.7 101 275-399 40-140 (164)
122 cd03309 CmuC_like CmuC_like. P 23.8 4.8E+02 0.01 28.7 9.8 81 89-170 139-239 (321)
123 PRK13601 putative L7Ae-like ri 23.7 2E+02 0.0042 24.8 5.3 54 555-612 16-69 (82)
124 PRK00865 glutamate racemase; P 23.5 3.3E+02 0.0071 28.9 8.3 88 67-167 17-111 (261)
125 cd00717 URO-D Uroporphyrinogen 22.0 4.8E+02 0.01 28.6 9.6 127 90-231 162-303 (335)
126 cd00562 NifX_NifB This CD repr 21.6 1.3E+02 0.0028 26.3 4.1 43 111-159 54-96 (102)
127 PRK06683 hypothetical protein; 21.3 2.3E+02 0.0049 24.4 5.3 50 555-612 19-72 (82)
No 1
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-94 Score=837.12 Aligned_cols=453 Identities=70% Similarity=1.072 Sum_probs=433.6
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++..+.+.|.+
T Consensus 63 P~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ 142 (517)
T TIGR02342 63 PAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIK 142 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHH
Confidence 44555788899999999999999999999999999999999999999999999999999999999999987768889999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCC-CCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSAN-VNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~-~~m~~~~~n 512 (841)
+|+|++++|+.+.+.++|++++++|+..++++..++.+|+++|+|++..||+.++|++++|++|++++.+ .+||++++|
T Consensus 143 va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n 222 (517)
T TIGR02342 143 SATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEK 222 (517)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccC
Confidence 9999999999999999999999999999986444567999999999999999999999999999999943 589999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
+||++++++|++++++++.++.++++++++.++++|+++++++++++++.|++||+|+++|+++++++++++||.++||+
T Consensus 223 ~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~ 302 (517)
T TIGR02342 223 AKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIM 302 (517)
T ss_pred CcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+++++++++|+|||++|||++++++++++++++|+|+.|++.++++.+|++|++++.+++.+||+|||+|+.+++|++|+
T Consensus 303 av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~ 382 (517)
T TIGR02342 303 VVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERS 382 (517)
T ss_pred EEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998866899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||+++++++++++++|||||++|++++.+|+ +++++.++.+|+++
T Consensus 383 i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~i 429 (517)
T TIGR02342 383 LHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLS---------------------------------KLARTMKGVESYCV 429 (517)
T ss_pred HHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHH---------------------------------HHHhcCCcHHHHHH
Confidence 999999999999999999999999999999999 67677788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 430 ~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~ 509 (517)
T TIGR02342 430 RAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILK 509 (517)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q psy8873 833 IDDIVNT 839 (841)
Q Consensus 833 iD~iI~~ 839 (841)
||+||++
T Consensus 510 iD~ii~~ 516 (517)
T TIGR02342 510 IDDIVFT 516 (517)
T ss_pred ccceeec
Confidence 9999875
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.3e-93 Score=826.58 Aligned_cols=443 Identities=42% Similarity=0.672 Sum_probs=423.8
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++..+++.|.++|+|
T Consensus 74 ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~t 153 (519)
T TIGR02339 74 MLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAET 153 (519)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999876678899999999
Q ss_pred hccCcch-hhhhhHHHHHHHHHHhhhcCCCCCC--cccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 438 SLNSKVV-SQQASLLAPIAVDAVLKVVNPQRDT--NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 438 ~l~sk~~-~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
+++||+. +.|.++|++++++|+.++++..+++ .||+++|+|++++||+++||++++|++|++++.+.+||+.++|||
T Consensus 154 sl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~k 233 (519)
T TIGR02339 154 SLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAK 233 (519)
T ss_pred hhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCc
Confidence 9999998 7999999999999999997522123 588899999999999999999999999999994448999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++||+++++++.++.++++++++++.++|+++++.++++|++.|++||+++++| ++.++++|.++||+++
T Consensus 234 Illl~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~L~~~gI~~v 308 (519)
T TIGR02339 234 IALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGI-----DDLAQHYLAKAGILAV 308 (519)
T ss_pred EEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCc-----cHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLH 674 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~ 674 (841)
+++++++|+|||++|||++++++++++++++|+|++|+++++|+++|++|++|..+ ..|||+|||+|+.+++|.+|+++
T Consensus 309 ~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~~r~i~ 387 (519)
T TIGR02339 309 RRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP-KAVTILLRGGTEHVVDELERSIQ 387 (519)
T ss_pred ecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-CEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876 89999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHH
Q psy8873 675 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRA 754 (841)
Q Consensus 675 dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 754 (841)
||++++++++++|+||||||++|++|+.+|+ +++++.++++++++++
T Consensus 388 DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~~~~ 434 (519)
T TIGR02339 388 DALHVVASALEDGKVVAGGGAVEIELALRLR---------------------------------SYARKIGGREQLAIEA 434 (519)
T ss_pred HHHHHHHHHhcCCCEeeCCCHHHHHHHHHHH---------------------------------HHhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999998 6666778899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchh
Q psy8873 755 FAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834 (841)
Q Consensus 755 ~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD 834 (841)
|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||
T Consensus 435 ~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id 514 (519)
T TIGR02339 435 FADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRID 514 (519)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999998777789999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q psy8873 835 DIVNT 839 (841)
Q Consensus 835 ~iI~~ 839 (841)
++|++
T Consensus 515 ~ii~~ 519 (519)
T TIGR02339 515 DVIAA 519 (519)
T ss_pred HHhhC
Confidence 99874
No 3
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-92 Score=820.84 Aligned_cols=454 Identities=73% Similarity=1.115 Sum_probs=430.2
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLI 432 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~ 432 (841)
||+.+++++++++|+.++||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|+++++|++..+.+.|.
T Consensus 61 hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~ 140 (515)
T cd03338 61 HPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLI 140 (515)
T ss_pred CHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 44455556678999999999999999999999999999999999999999999999999999999999998766788999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceee
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVE 511 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~ 511 (841)
++|+|++++|+.+.|.++|++++++|+.+++++...+.+|+++|+|.+..||+++||++++|++|++++ ++.+||++++
T Consensus 141 ~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~ 220 (515)
T cd03338 141 KSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIE 220 (515)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCcccc
Confidence 999999999999999999999999999999864333578999999999999999999999999999999 4433699999
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
|+|+++++|+|++++++.+.++.++++++++.+.++|+++++++++++++.|++|||++++|+++++++++++||.++||
T Consensus 221 n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I 300 (515)
T cd03338 221 KAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKI 300 (515)
T ss_pred CCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 671 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r 671 (841)
++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+.+++.|||+|||+|+.+++|++|
T Consensus 301 ~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r 380 (515)
T cd03338 301 MVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAER 380 (515)
T ss_pred eEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999874589999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHH
Q psy8873 672 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 751 (841)
Q Consensus 672 ~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (841)
+++||++++++++++|++|||||++|++|+.+|+ +++.+.++++|++
T Consensus 381 ~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~---------------------------------~~~~~~~~~~~~~ 427 (515)
T cd03338 381 SLHDALCVIRCLVKKRALIPGGGAPEIEIALQLS---------------------------------EWARTLTGVEQYC 427 (515)
T ss_pred HHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHH---------------------------------HHhccCCcHHHHH
Confidence 9999999999999999999999999999999999 6666778899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
+++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||
T Consensus 428 ~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL 507 (515)
T cd03338 428 VRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507 (515)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred chhhhhcC
Q psy8873 832 KIDDIVNT 839 (841)
Q Consensus 832 ~iD~iI~~ 839 (841)
|||+||++
T Consensus 508 ~ID~ii~~ 515 (515)
T cd03338 508 KIDDIVLA 515 (515)
T ss_pred ccchhhcC
Confidence 99999975
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.5e-92 Score=812.37 Aligned_cols=446 Identities=27% Similarity=0.434 Sum_probs=423.2
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCC-ccchHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT-LADRENLI 432 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~-~~~~~~l~ 432 (841)
|+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++.. ..+.+.|.
T Consensus 70 P~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~ 149 (531)
T TIGR02347 70 PTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLL 149 (531)
T ss_pred hHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Confidence 66667778899999999999999999999999999999999999999999999999999999999997752 45788999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
++|+|+++||+.+.+.++|++++++|+..+++. ...+|+++|++++..||+.+||++++|++|++++.+..||+.++|
T Consensus 150 ~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~--~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n 227 (531)
T TIGR02347 150 NVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD--GEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKN 227 (531)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHHHHhhc--CCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccC
Confidence 999999999999999999999999999999752 225888899999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEecCCcccccccHHH
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG-------CN---VLLVQKSILRDAISDLA 582 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g-------~~---lvi~~~~I~~~~l~~~~ 582 (841)
|+|++++++|++++++.+..+.+++++++..+++.|++++.+++++|++.+ ++ +|+++++| ++.+
T Consensus 228 ~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I-----~~~a 302 (531)
T TIGR02347 228 AYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI-----DPPS 302 (531)
T ss_pred ceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCc-----cHHH
Confidence 999999999999999999999999999999999999999999999999976 25 99999999 9999
Q ss_pred HHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 583 IHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 583 ~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
++||.++||++++++++++|+|||++|||++++++++++++++|+|++|++..+++++|++|++|..+ +.|||+|||+|
T Consensus 303 ~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TI~lrG~t 381 (531)
T TIGR02347 303 LDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-KSCTILIKGPN 381 (531)
T ss_pred HHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCC-CeEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD 742 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (841)
+.+++|++|+++||++++++++++|++|||||++|++|+.+|+ +++.
T Consensus 382 ~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~---------------------------------~~~~ 428 (531)
T TIGR02347 382 DHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLK---------------------------------EEKK 428 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHH---------------------------------HHhh
Confidence 9999999999999999999999999999999999999999999 6777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHH
Q psy8873 743 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITL 822 (841)
Q Consensus 743 ~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~ 822 (841)
+.++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.||++.|||||+.+|+++|++
T Consensus 429 ~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~ 508 (531)
T TIGR02347 429 SVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQS 508 (531)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999998877789999999999999999999999999999999
Q ss_pred HHHHHHHHHchhhhhcCC
Q psy8873 823 STETVRSILKIDDIVNTL 840 (841)
Q Consensus 823 A~e~a~~iL~iD~iI~~~ 840 (841)
|+|+|++|||||+||+++
T Consensus 509 A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 509 ATVIASQLLLVDEVMRAG 526 (531)
T ss_pred HHHHHHHHHhHHHHHhCc
Confidence 999999999999999864
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-92 Score=819.53 Aligned_cols=444 Identities=31% Similarity=0.520 Sum_probs=422.4
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++..+.+.|.++++|
T Consensus 74 ll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t 153 (525)
T TIGR02344 74 SMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQS 153 (525)
T ss_pred HHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999887678889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--ccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
++++|+.+.|.+.|++++++|+..++++..++ .+|++ +|+|++++||+++||++++|++|++++....||++++|||
T Consensus 154 ~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~k 233 (525)
T TIGR02344 154 CIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPR 233 (525)
T ss_pred hhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCC
Confidence 99999999999999999999999997643122 45654 5899999999999999999999999983349999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++|++++++++.++.+++++++++++++|++++++++++|.+.|++||+++++| +++++++|.++||+++
T Consensus 234 Illl~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I-----~dla~~~l~~~~I~av 308 (525)
T TIGR02344 234 IVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGV-----SDLAQHYLLKANISAI 308 (525)
T ss_pred EEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-----cHHHHHHHhHCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
+++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|+.+ +.|||+|||+|+.+++|++|++
T Consensus 309 ~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIlLrG~t~~~l~E~er~l 387 (525)
T TIGR02344 309 RRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-KACTILLRGASKDVLNEIERNL 387 (525)
T ss_pred ecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-CEEEEEEEcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999877 8999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++++++++++||||||++|++||.+|+ +++.+.++.++++++
T Consensus 388 ~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~~~ 434 (525)
T TIGR02344 388 QDAMAVARNVLLEPKLLPGGGATEMAVSVYLA---------------------------------KKASKLEGVQQWPYR 434 (525)
T ss_pred HHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH---------------------------------HHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999 677778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
+|++||+.||++|++|||+|+.+++.+|+..|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 435 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~ 514 (525)
T TIGR02344 435 AVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLR 514 (525)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999876 56899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|.++
T Consensus 515 id~ii~~~ 522 (525)
T TIGR02344 515 IDDIVSGV 522 (525)
T ss_pred hhHHhhcC
Confidence 99999764
No 6
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.7e-92 Score=816.30 Aligned_cols=446 Identities=32% Similarity=0.536 Sum_probs=421.2
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLIKS 434 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~~i 434 (841)
.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|++ +++|++..+++.|.++
T Consensus 64 akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~i 143 (527)
T cd03335 64 AKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINV 143 (527)
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHH
Confidence 348889999999999999999999999999999999999999999999999999999999996 8999876688899999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--cccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
|+|+++||+.+.+.++|++++++|+..++.+..++ .+|+++|+|++.+||++++|++++|++|++++.+.+||+.++|
T Consensus 144 a~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n 223 (527)
T cd03335 144 AKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKN 223 (527)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccC
Confidence 99999999998899999999999999996322222 4889999999999999999999999999999954599999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++.+.++.++++++++.+.+.|++++++++++|.+.|++|||++++| ++.+++||.+++|+
T Consensus 224 ~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I-----~d~al~~L~~~~I~ 298 (527)
T cd03335 224 AKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGI-----DDMCLKYFVEAGAM 298 (527)
T ss_pred CcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC-----cHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCC------CCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
+++++++++|+|||++|||+++++++++ +++++|+|++|++.++++++|++|++|+.+ ++|||+|||+|+.++
T Consensus 299 ~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~-~~~TIllrG~t~~~l 377 (527)
T cd03335 299 AVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR-SSASIILRGANDFML 377 (527)
T ss_pred EEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHH
Confidence 9999999999999999999999987654 345899999999999999999999999876 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|++|+++||++++++++++|++|||||++|++|+.+|+ +++++.++
T Consensus 378 ~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~---------------------------------~~~~~~~~ 424 (527)
T cd03335 378 DEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLE---------------------------------NFATTLGS 424 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHH---------------------------------HHHhccCc
Confidence 999999999999999999999999999999999999999 67777889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--------CCceeEEccCCccccccccCcccchHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG--------ETTTGINVRKGAITNILEENVVQPLLVSTS 818 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~--------~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~ 818 (841)
++++++++|++||+.||++|++|||+|+.+++.+|++.|.++ .+++|+|+.+|++.||++.|||||+.+|.+
T Consensus 425 ~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~ 504 (527)
T cd03335 425 REQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIK 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHH
Confidence 999999999999999999999999999999999999999876 357999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHchhhhhcCC
Q psy8873 819 AITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 819 ~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+.|+|+|++|||||++|++.
T Consensus 505 ~i~~A~e~a~~iLrID~ii~~~ 526 (527)
T cd03335 505 SLKFATEAAITILRIDDLIKLN 526 (527)
T ss_pred HHHHHHHHHHHHHhhcceeecC
Confidence 9999999999999999999864
No 7
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.3e-92 Score=813.66 Aligned_cols=443 Identities=40% Similarity=0.629 Sum_probs=420.9
Q ss_pred hHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCC--ccchHHHHHH
Q psy8873 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT--LADRENLIKS 434 (841)
Q Consensus 357 ~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~--~~~~~~l~~i 434 (841)
+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++ ..+++.|.++
T Consensus 84 kll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i 163 (532)
T TIGR02343 84 KLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQA 163 (532)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999874 2357889999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
|+|++++|+.+.+.+.|++++++|+..+.+ .+.+.+|+++|+|++++||+++||++++|++|++++.+..||+.++|||
T Consensus 164 a~t~l~sK~~~~~~~~ls~i~~~av~~i~~-~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~k 242 (532)
T TIGR02343 164 AKTSLGSKIVSKCHRRFAEIAVDAVLMVAD-MERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAK 242 (532)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHhhhh-cCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCc
Confidence 999999999999999999999999999854 2334789999999999999999999999999999994448999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++||+++++++.++.++++++++.+.+.|++++.++++++++.|++|||++++| ++.+++||.++||+++
T Consensus 243 I~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I-----~~~al~~L~~~~i~~v 317 (532)
T TIGR02343 243 IAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF-----DDEANHLLLQNDLPAV 317 (532)
T ss_pred EEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc-----cHHHHHHHHHCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+++++++|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|+.+ +.+||+|||+|+.+++|++|+
T Consensus 318 ~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-~~~TIllrG~t~~~l~E~er~ 396 (532)
T TIGR02343 318 RWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-KAVTIFIRGGNKMIIEEAKRS 396 (532)
T ss_pred EcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC-CEEEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 489999999887 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++++++++|++|||||++|++|+.+|+ +++.+.++.+++++
T Consensus 397 l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~i 443 (532)
T TIGR02343 397 IHDALCVVRNLIKNSRIVYGGGAAEISCSLAVS---------------------------------QEADKYSGVEQYAI 443 (532)
T ss_pred HHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHH---------------------------------HHhccCCcHHHHHH
Confidence 999999999999999999999999999999999 67777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..+ ..++|+|+.+|.+.||++.|||||+.+|+++|+.|+|+|++||
T Consensus 444 ~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL 523 (532)
T TIGR02343 444 RAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMIL 523 (532)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999754 5679999999999999999999999999999999999999999
Q ss_pred chhhhhcC
Q psy8873 832 KIDDIVNT 839 (841)
Q Consensus 832 ~iD~iI~~ 839 (841)
|||++|++
T Consensus 524 ~id~ii~~ 531 (532)
T TIGR02343 524 KIDDVISP 531 (532)
T ss_pred hHhhhccC
Confidence 99999975
No 8
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-91 Score=812.10 Aligned_cols=449 Identities=40% Similarity=0.651 Sum_probs=427.0
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLI 432 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~ 432 (841)
||+.+++++++++|+.++||||||+++|+++|++++.+++++|+||..|++||++|.+.++++|++++.|++..+++.+.
T Consensus 68 hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~ 147 (517)
T cd03343 68 HPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLR 147 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 34445888999999999999999999999999999999999999999999999999999999999999998765788999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCC-CcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~-~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
++|+++++||+.+.|.+.|++++++|+.++++.... ..+|+++|+|.+.+||+++||++++|++|++++.+..||+.++
T Consensus 148 ~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~ 227 (517)
T cd03343 148 KIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVE 227 (517)
T ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccC
Confidence 999999999999999999999999999999753211 2588889999999999999999999999999994448999999
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
||||++++++||+++++++.++.++++++++++.++|++++++++++|++.|++||+++++| ++.+++||.++||
T Consensus 228 n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~l~~~gI 302 (517)
T cd03343 228 NAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGI-----DDLAQHYLAKAGI 302 (517)
T ss_pred CCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-----cHHHHHHHhHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 671 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r 671 (841)
++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|+.+ +.|||+|||+|+.+++|++|
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~e~~~ 381 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP-KAVTILLRGGTEHVVDELER 381 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHH
Q psy8873 672 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 751 (841)
Q Consensus 672 ~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (841)
+++||++++|+++++|+||||||++|++++.+|+ +++.+.+++++++
T Consensus 382 ~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~---------------------------------~~~~~~~~~~~~~ 428 (517)
T cd03343 382 ALEDALRVVADALEDGKVVAGGGAVEIELAKRLR---------------------------------EYARSVGGREQLA 428 (517)
T ss_pred HHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHH---------------------------------HHHhcCCCHHHHH
Confidence 9999999999999999999999999999999998 6666778899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
+++|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||
T Consensus 429 ~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 508 (517)
T cd03343 429 VEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508 (517)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||++|+++
T Consensus 509 ~id~ii~~~ 517 (517)
T cd03343 509 RIDDVIAAK 517 (517)
T ss_pred hhhHhhhCC
Confidence 999999864
No 9
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.9e-91 Score=810.73 Aligned_cols=445 Identities=41% Similarity=0.654 Sum_probs=420.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc--cchHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL--ADRENL 431 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~--~~~~~l 431 (841)
|+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++. .+.+.|
T Consensus 77 P~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l 156 (526)
T cd03339 77 QIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPL 156 (526)
T ss_pred HHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHH
Confidence 334488899999999999999999999999999999999999999999999999999999999999998753 367889
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++|+|++++|+.+.+.+.|++++++|+..+.+. +...+|++.|+|++++||+++||++++|++|++++.+.+||+.++
T Consensus 157 ~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~-~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~ 235 (526)
T cd03339 157 IQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL-ERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVK 235 (526)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc-CCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceec
Confidence 9999999999999999999999999999988642 234678889999999999999999999999999994459999999
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
||||++++++||+++++++.++.++++++++.+.++|+++++++++++++.|++||+++++| ++.+++||.++||
T Consensus 236 n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I-----~~~al~~L~~~~I 310 (526)
T cd03339 236 DAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF-----DDEANHLLLQNGL 310 (526)
T ss_pred CCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC-----CHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEA 669 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 669 (841)
++++++++++|+|||++|||++++++++++++++|+|+.|++.++|. +++++|++|+.+ +.+||+|||+|+.+++|+
T Consensus 311 ~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~ 389 (526)
T cd03339 311 PAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-KAVTIFIRGGNKMIIEEA 389 (526)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC-CEEEEEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 689999999887 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhH
Q psy8873 670 ARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDA 749 (841)
Q Consensus 670 ~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (841)
+|+++||++++++++++|++|||||++|++++.+|+ +++...++.++
T Consensus 390 er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~ 436 (526)
T cd03339 390 KRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVE---------------------------------KAADKCSGIEQ 436 (526)
T ss_pred HHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHH---------------------------------HHhccCCCHHH
Confidence 999999999999999999999999999999999998 67777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 750 YCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 750 ~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
+++++|++||+.||++|++|||+|+.+++.+|+..|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|+
T Consensus 437 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~ 516 (526)
T cd03339 437 YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVK 516 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999754 5679999999999999999999999999999999999999
Q ss_pred HHHchhhhhc
Q psy8873 829 SILKIDDIVN 838 (841)
Q Consensus 829 ~iL~iD~iI~ 838 (841)
+|||||++|.
T Consensus 517 ~iL~iD~ii~ 526 (526)
T cd03339 517 MILKIDDVIV 526 (526)
T ss_pred HHhhhceecC
Confidence 9999999973
No 10
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.9e-91 Score=808.36 Aligned_cols=441 Identities=33% Similarity=0.535 Sum_probs=420.6
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc---hHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD---RENL 431 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~---~~~l 431 (841)
..+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|++.++++|+++++|++..+ ++.|
T Consensus 82 ~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l 161 (533)
T PTZ00212 82 AAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDL 161 (533)
T ss_pred HHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHH
Confidence 3447889999999999999999999999999999999999999999999999999999999999999886433 6789
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++|+|++++|+.+.+.+.|++++++|+..+.+ .+|+++|++++++||+++||++++|+++++++.. .||++++
T Consensus 162 ~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~-----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~ 235 (533)
T PTZ00212 162 LNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG-----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLE 235 (533)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhc-----cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCcccc
Confidence 999999999999999999999999999999853 4788899999999999999999999999999854 6899999
Q ss_pred cceEEEEEeecCCCcccC-CcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 512 KAKIGLIQFCISPPKTDM-DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 512 n~killl~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
||||++++++||++++++ +.++.+++++++..+.+.|+++++++++.|++.|++++++++.| ++.++++|.++|
T Consensus 236 n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I-----~d~a~~~L~~~~ 310 (533)
T PTZ00212 236 NCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLI-----YNYPEQLFAEAG 310 (533)
T ss_pred CCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCc-----cHHHHHHHHHCC
Confidence 999999999999999996 88899999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHH
Q psy8873 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 591 I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 670 (841)
|++++++++++++|||++|||++++++++++++++|+|++|++..+|+++|++|++|..+ +.|||+|||+|+.+++|++
T Consensus 311 I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~e 389 (533)
T PTZ00212 311 IMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKG-EACTIVLRGASTHILDEAE 389 (533)
T ss_pred CEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCC-CEEEEEEECCChhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|+++||++++++++++|++|||||++|++++.+|+ +++++.++++++
T Consensus 390 r~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~---------------------------------~~~~~~~~~~~~ 436 (533)
T PTZ00212 390 RSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVE---------------------------------ELAKKVEGKKSL 436 (533)
T ss_pred HHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHH---------------------------------HHHhhCCCHHHH
Confidence 99999999999999999999999999999999999 677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|
T Consensus 437 ~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~i 516 (533)
T PTZ00212 437 AIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMI 516 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||++|+..
T Consensus 517 L~id~ii~~~ 526 (533)
T PTZ00212 517 LRVDDIIRCA 526 (533)
T ss_pred HhhhHhhhcC
Confidence 9999999753
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.8e-91 Score=805.22 Aligned_cols=441 Identities=32% Similarity=0.526 Sum_probs=420.4
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc---cchHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL---ADRENL 431 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~---~~~~~l 431 (841)
..+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++. .+++.|
T Consensus 70 ~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l 149 (517)
T cd03336 70 AAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDL 149 (517)
T ss_pred HHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHH
Confidence 33478889999999999999999999999999999999999999999999999999999999999998742 236789
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++|+|++++|+.+.+.++|++++++|+..+.+ .+|.++|++++++||+++||++++|+++++++.. .||++++
T Consensus 150 ~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~-----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~ 223 (517)
T cd03336 150 LNIARTTLSSKILTQDKEHFAELAVDAVLRLKG-----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIE 223 (517)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHHHHhhc-----cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeec
Confidence 999999999999999999999999999999952 5778899999999999999999999999999743 6899999
Q ss_pred cceEEEEEeecCCCcccC-CcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 512 KAKIGLIQFCISPPKTDM-DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 512 n~killl~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
||||++++++|+++++++ +.++.+++++|++.+.+.|+++++++++.|++.|++++++++.| ++.+++||.++|
T Consensus 224 n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I-----~~~~~~~l~~~~ 298 (517)
T cd03336 224 NAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLI-----YNYPEQLFADAG 298 (517)
T ss_pred cccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCc-----cHHHHHHHHHCC
Confidence 999999999999999996 88899999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHH
Q psy8873 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 591 I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 670 (841)
|++++++++++|+|||++|||++++++++++++++|+|++|++..+|+++|++|++|+.+ +.|||+|||+|+.+++|.+
T Consensus 299 I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~e 377 (517)
T cd03336 299 IMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG-EACTIVLRGASQQILDEAE 377 (517)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCC-ceEEEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|+++||++++++++++|++|||||++|++|+.+|+ +++++.++++++
T Consensus 378 r~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~ 424 (517)
T cd03336 378 RSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVE---------------------------------ELAKKTPGKKSL 424 (517)
T ss_pred HHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHH---------------------------------HHhhhCCCHHHH
Confidence 99999999999999999999999999999999999 677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|
T Consensus 425 ~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 504 (517)
T cd03336 425 AIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMI 504 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||++|++.
T Consensus 505 L~id~ii~~~ 514 (517)
T cd03336 505 LRVDDIIKCA 514 (517)
T ss_pred HhHhHHhhcC
Confidence 9999999864
No 12
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-90 Score=804.63 Aligned_cols=440 Identities=33% Similarity=0.543 Sum_probs=420.2
Q ss_pred hHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc----chHHHH
Q psy8873 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA----DRENLI 432 (841)
Q Consensus 357 ~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~----~~~~l~ 432 (841)
+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++.. +++.|.
T Consensus 73 kll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~ 152 (522)
T cd03340 73 KTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLE 152 (522)
T ss_pred HHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHH
Confidence 3888999999999999999999999999999999999999999999999999999999999999987642 367899
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC--CCCCce
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN--VNGPKR 509 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~--~~m~~~ 509 (841)
++|+|+++||+.+.+.++|++++++|+..+++ .+|.++|+|+++.||+++||++++|++|+++| ++ ..||+.
T Consensus 153 ~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~-----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~ 227 (522)
T cd03340 153 KCAATALNSKLIASEKEFFAKMVVDAVLSLDD-----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKK 227 (522)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHHhcc-----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCcc
Confidence 99999999999999999999999999999964 46788999999999999999999999999998 43 357999
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|++++++||+++.+.+.++.++++++++.+.+.|++++.++++++++.|+++|+++++| ++.+++||.++
T Consensus 228 ~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i-----~d~a~~~l~~~ 302 (522)
T cd03340 228 FKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPI-----GDLATQYFADR 302 (522)
T ss_pred ccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-----cHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHH
Q psy8873 590 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEA 669 (841)
Q Consensus 590 ~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 669 (841)
||++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|..+ +.+||+|||+++.+++|.
T Consensus 303 ~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~ 381 (522)
T cd03340 303 DIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-KTCTIILRGGAEQFIEEA 381 (522)
T ss_pred CcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCC-ceEEEEEECCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhH
Q psy8873 670 ARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDA 749 (841)
Q Consensus 670 ~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (841)
+|+++||++++++++++|+||||||++|++++.+|+ +++++.+++++
T Consensus 382 er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~---------------------------------~~~~~~~~~~~ 428 (522)
T cd03340 382 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR---------------------------------DYSRTIAGKQQ 428 (522)
T ss_pred HHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHH---------------------------------HHhccCCCHHH
Confidence 999999999999999999999999999999999999 66667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 750 YCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 750 ~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
+++++|++||+.||++|++|||+|+.+++.+|++.|..++ .++|||+.+|++.||++.|||||+.+|+++|+.|+|+|+
T Consensus 429 ~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~ 508 (522)
T cd03340 429 LVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAAC 508 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred HHHchhhhhcCC
Q psy8873 829 SILKIDDIVNTL 840 (841)
Q Consensus 829 ~iL~iD~iI~~~ 840 (841)
+|||||++|+++
T Consensus 509 ~iL~id~ii~~~ 520 (522)
T cd03340 509 LILSVDETIKNP 520 (522)
T ss_pred HHhhhhhheeCC
Confidence 999999999864
No 13
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-90 Score=797.27 Aligned_cols=439 Identities=33% Similarity=0.520 Sum_probs=417.8
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc---chHHHHHH
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA---DRENLIKS 434 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~---~~~~l~~i 434 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++.. +.+.|.++
T Consensus 74 ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~i 153 (519)
T TIGR02341 74 VLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNI 153 (519)
T ss_pred HHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHH
Confidence 777889999999999999999999999999999999999999999999999999999999999987532 35789999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
++|++++|+.+.+.+.|++++++|+..+.+ ..|.++|++.+++|+++++|++++|+++++++.. .||+.++||+
T Consensus 154 a~t~l~ski~~~~~~~~s~l~~~av~~i~~-----~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~ 227 (519)
T TIGR02341 154 ARTTLSSKILSQHKDHFAQLAVDAVLRLKG-----SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAK 227 (519)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHhcc-----CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeecccc
Confidence 999999999999999999999999999842 2366789999999999999999999999999854 6899999999
Q ss_pred EEEEEeecCCCcccC-CcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 515 IGLIQFCISPPKTDM-DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 515 illl~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
|++++++|+++++++ +.++.+++++++..+.+.|++++.++++.|++.|++++++++.| ++.+++||.+++|++
T Consensus 228 Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I-----~~~~~~~l~~~~I~~ 302 (519)
T TIGR02341 228 ILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLI-----YNYPEQLFADAGVMA 302 (519)
T ss_pred EEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcC-----CHHHHHHHHHCCcEE
Confidence 999999999999986 88899999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
++++++.+|+|||++|||++++++++++++++|+|+.|++..+|+++|++|++|+.+ +.|||+|||+|+.+++|++|++
T Consensus 303 v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~er~i 381 (519)
T TIGR02341 303 IEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG-EACTIVLRGATQQILDESERSL 381 (519)
T ss_pred EecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCC-CEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||+++++++++++++|||||++|++++.+|+ +++++.+++++++++
T Consensus 382 ~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~---------------------------------~~~~~~~~~~~~~i~ 428 (519)
T TIGR02341 382 HDALCVLSQTVKESRTVLGGGCSEMLMSKAVA---------------------------------VEAQKVPGKEALAVE 428 (519)
T ss_pred HHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHH---------------------------------HHhhcCCChHHHHHH
Confidence 99999999999999999999999999999998 666778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHch
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~i 833 (841)
+|++||+.||++|++|||+|+.+++.+|+..|..+..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||||
T Consensus 429 ~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 429 AFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999887778999999999999999999999999999999999999999999
Q ss_pred hhhhcCCC
Q psy8873 834 DDIVNTLN 841 (841)
Q Consensus 834 D~iI~~~~ 841 (841)
|++|++.+
T Consensus 509 d~ii~~~~ 516 (519)
T TIGR02341 509 DNIIKAAP 516 (519)
T ss_pred HHHHhcCC
Confidence 99998753
No 14
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-89 Score=798.10 Aligned_cols=446 Identities=32% Similarity=0.524 Sum_probs=419.2
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhc-cccCCccchHHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEM-STPITLADRENLIKS 434 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~-s~~~~~~~~~~l~~i 434 (841)
.+++++++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|++. ++|++..+.+.|.++
T Consensus 68 akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~v 147 (536)
T TIGR02340 68 AKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINV 147 (536)
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHH
Confidence 3488899999999999999999999999999999999999999999999999999999999974 888876678899999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--cccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
|+|+++||+.+.+.+.|++++++|+..++.+..++ .+|+++|++++.+||++++|++++|++|++++.+.+||+.++|
T Consensus 148 a~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n 227 (536)
T TIGR02340 148 AKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKK 227 (536)
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecC
Confidence 99999999999999999999999999996322222 5788999999999999999999999999999955599999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++.+.++.++++.+++.+.+.|++++.+.+++|++.|++||+++++| ++.+++||.+++|+
T Consensus 228 ~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I-----~~~a~~~L~k~~I~ 302 (536)
T TIGR02340 228 AKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGI-----DDMCLKYFVEAGAM 302 (536)
T ss_pred CcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC-----cHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCC------CCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
+++++++++|+|||++|||++++++.++ +++++|+|++|++.++++++|++|+++..+ ++|||+|||+|+.++
T Consensus 303 ~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TIlirG~t~~~l 381 (536)
T TIGR02340 303 GVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-KSASIILRGANDFML 381 (536)
T ss_pred EEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHH
Confidence 9999999999999999999999997544 455699999999999999999999998876 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|++|+++||++++++++++|++|||||++|++++.+|+ +++++.++
T Consensus 382 ~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~---------------------------------~~~~~~~~ 428 (536)
T TIGR02340 382 DEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLE---------------------------------NFATTLGS 428 (536)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHH---------------------------------HHhhhCCC
Confidence 999999999999999999999999999999999999998 66667788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--------CCceeEEccCCccccccccCcccchHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG--------ETTTGINVRKGAITNILEENVVQPLLVSTS 818 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~--------~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~ 818 (841)
++++++++|++||+.||++|++|||+|+.+++.+|++.|.++ ..++|||+.+|++.||++.|||||+.+|.+
T Consensus 429 ~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~ 508 (536)
T TIGR02340 429 REQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVK 508 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHH
Confidence 999999999999999999999999999999999999999875 247999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHchhhhhcCC
Q psy8873 819 AITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 819 ~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+.|+|+|++|||||++|++.
T Consensus 509 ~l~~A~e~a~~iL~ID~ii~~~ 530 (536)
T TIGR02340 509 SLKFATEAAITILRIDDLIKLN 530 (536)
T ss_pred HHHHHHHHHHHHHhhhhhhhcC
Confidence 9999999999999999999864
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-89 Score=794.86 Aligned_cols=445 Identities=33% Similarity=0.526 Sum_probs=422.5
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc---cchH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL---ADRE 429 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~---~~~~ 429 (841)
||+.+++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++. .+++
T Consensus 70 hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~ 149 (522)
T TIGR02345 70 HPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQRE 149 (522)
T ss_pred ChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHH
Confidence 3334488899999999999999999999999999999999999999999999999999999999999998762 2457
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC--CCC
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN--VNG 506 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~--~~m 506 (841)
.|.++|+|+++||+.+.+.++|++++++|+.++++ ..+|+++|+|+++.||+++||++++|++|++++ ++ ..|
T Consensus 150 ~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~----~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~ 225 (522)
T TIGR02345 150 VLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDI----DDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQ 225 (522)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhh----ccCChhHheEEeecCCCHHhcceecceEEecccCccccccC
Confidence 89999999999999999999999999999999964 258888999999999999999999999999998 44 357
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
|+.++||+|++++++|++.+.+.+..+.++++++++++.+.|++++.++++++++.|+++|+++++| ++.+++||
T Consensus 226 ~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i-----~d~~~~~L 300 (522)
T TIGR02345 226 PKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPI-----GDLATQYF 300 (522)
T ss_pred CceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCc-----cHHHHHHH
Confidence 9999999999999999999999889999999999999999999999999999999999999999999 99999999
Q ss_pred HhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 587 ~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
.+++|++++++++++++|+|++|||++++++++++++++|+|+.|++.++++++|.+|++|+.+ ++|||+|||+|+.++
T Consensus 301 ~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-~~~TI~lrG~t~~~l 379 (522)
T TIGR02345 301 ADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-KTCTIILRGGAEQFI 379 (522)
T ss_pred HHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|.+|+++||+++++++++++.+|||||++|++++.+|+ +++.+.++
T Consensus 380 ~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~---------------------------------~~~~~~~~ 426 (522)
T TIGR02345 380 EEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILR---------------------------------EHSKKIDG 426 (522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHH---------------------------------HHHhhCCC
Confidence 999999999999999999999999999999999999998 66667789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
++++++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.+|+++|+.|+|+
T Consensus 427 ~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~ 506 (522)
T TIGR02345 427 KQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEA 506 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777899999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
|++|||||++|++.
T Consensus 507 a~~iL~id~ii~~~ 520 (522)
T TIGR02345 507 ACTILSIDETIMNP 520 (522)
T ss_pred HHHHHhHHHHHhCC
Confidence 99999999999864
No 16
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-88 Score=783.85 Aligned_cols=444 Identities=31% Similarity=0.557 Sum_probs=418.9
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccc-cCC-ccchHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMST-PIT-LADRENLI 432 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~-~~~-~~~~~~l~ 432 (841)
+.+++++++++|+.++||||||+++|+++||+++++++++|+||+.|++||+.|.+.++++|+++++ +++ ..+.+.|.
T Consensus 73 ~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~ 152 (531)
T TIGR02346 73 AAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELI 152 (531)
T ss_pred HHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 3348889999999999999999999999999999999999999999999999999999999999986 663 34678899
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
++++|++++|+.+. .++|++++++|+.++++. .++.+|++.|+|+++.||+.+||++++|++|++++. +||+.++|
T Consensus 153 ~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~-~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n 228 (531)
T TIGR02346 153 KALKASISSKQYGN-EDFLAQLVAKACSTVMPK-NPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKN 228 (531)
T ss_pred HHHHHHhccccCch-HHHHHHHHHHHHHHHhhc-CCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccC
Confidence 99999999998877 999999999999999752 223689999999999999999999999999999953 57999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
+||++++++|++++++++.++.+++++++..+.+.|+++++++++++++.|++|||++++| ++++++||.+++|+
T Consensus 229 ~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I-----~d~~~~~l~~~~I~ 303 (531)
T TIGR02346 229 AKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSV-----GDMALHYCEKYNIM 303 (531)
T ss_pred CCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCc-----CHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
|+++++..+|+|||.+|||++++++++++++++|+|++|++.++|+++|.+|+++...++.+||+|||+|+.+++|++|+
T Consensus 304 av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~ 383 (531)
T TIGR02346 304 VLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERA 383 (531)
T ss_pred EEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887545999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++++++++|++|||||++|++++.+|+ +++++.++++++++
T Consensus 384 i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~---------------------------------~~~~~~~~~~~~~~ 430 (531)
T TIGR02346 384 IDDGVNVIKALVKDNRFLPGAGATEIELALRLK---------------------------------KYANKLPGLDQYAI 430 (531)
T ss_pred HHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHH---------------------------------HHhccCCCHHHHHH
Confidence 999999999999999999999999999999999 66667788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCc--cccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA--ITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~--~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|. +.||++.|||||+.+|+++|+.|+|+|++|
T Consensus 431 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 510 (531)
T TIGR02346 431 KKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTV 510 (531)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877778999999999 599999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||++|...
T Consensus 511 L~id~ii~~~ 520 (531)
T TIGR02346 511 LRVDQIIMAK 520 (531)
T ss_pred hhhhHhhccC
Confidence 9999999753
No 17
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-88 Score=779.34 Aligned_cols=409 Identities=31% Similarity=0.492 Sum_probs=387.4
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc-cchHHHHHHhhhhcc
Q psy8873 362 LSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL-ADRENLIKSAATSLN 440 (841)
Q Consensus 362 ~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~-~~~~~l~~ia~t~l~ 440 (841)
++++|+.++||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++.+++. .+++.+.++|+++++
T Consensus 74 ~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~ 153 (484)
T cd03342 74 AATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLR 153 (484)
T ss_pred HHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999999999999999999999999998864 478899999999999
Q ss_pred CcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEe
Q psy8873 441 SKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520 (841)
Q Consensus 441 sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~ 520 (841)
+|+.+.|.+.|++++++|+..++++ .+.||+++|+|++++||+++||++++|++|++++.+..||+.++||+|+++++
T Consensus 154 sk~~~~~~~~l~~l~~~A~~~v~~~--~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~ 231 (484)
T cd03342 154 TKLHADLADQLTEIVVDAVLAIYKP--DEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNV 231 (484)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhc--CCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeC
Confidence 9999999999999999999999752 23799999999999999999999999999999994448999999999999999
Q ss_pred ecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChh
Q psy8873 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 600 (841)
Q Consensus 521 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 600 (841)
+|++++++...++.++ |||++++| ++.++++|.++||+++++++++
T Consensus 232 ~le~~~~~~~~~~~~~-----------------------------lvi~~~~I-----~~~al~~l~~~~I~av~~~~~~ 277 (484)
T cd03342 232 SLEYEKTEVNSGFFYS-----------------------------VVINQKGI-----DPPSLDMLAKEGILALRRAKRR 277 (484)
T ss_pred CCCCCccccCcEEEEE-----------------------------EEEeCCCc-----cHHHHHHHHHCCCeEEEeCCHH
Confidence 9999988876655432 99999999 9999999999999999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q psy8873 601 DIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVV 680 (841)
Q Consensus 601 ~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~ 680 (841)
+|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|+.+ +.+||+|||+|+.+++|++|+++||++++
T Consensus 278 ~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~tI~lrg~t~~~l~E~er~l~DAl~~v 356 (484)
T cd03342 278 NMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-KSCTILIKGPNDHTITQIKDAIRDGLRAV 356 (484)
T ss_pred HHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876 89999999999999999999999999999
Q ss_pred HHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHH
Q psy8873 681 RCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALE 760 (841)
Q Consensus 681 ~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~ 760 (841)
++++++|++|||||++|++|+.+|+ +++.+.++++|+++++|++||+
T Consensus 357 k~~~~~~~~vpGGGa~e~~ls~~L~---------------------------------~~~~~~~~~~~~~i~~~a~Al~ 403 (484)
T cd03342 357 KNAIEDKCVVPGAGAFEVALYAHLK---------------------------------EFKKSVKGKAKLGVQAFADALL 403 (484)
T ss_pred HHHhcCCcEEeCCCHHHHHHHHHHH---------------------------------HHhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 6777788999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 761 VIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 761 ~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
.||++|++|||+|+.+++.+|++.|.+++.++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||+||++.
T Consensus 404 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 404 VIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999864
No 18
>KOG0358|consensus
Probab=100.00 E-value=7.2e-90 Score=704.13 Aligned_cols=441 Identities=75% Similarity=1.126 Sum_probs=425.8
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchh
Q psy8873 366 QDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVS 445 (841)
Q Consensus 366 qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~ 445 (841)
||.++||||||||||||+||+.+.+|+++|+||+.|...|+.|.+..+++|++++.|++..|++.|.+-+.|++|||+.+
T Consensus 92 QD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvS 171 (534)
T KOG0358|consen 92 QDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVS 171 (534)
T ss_pred ccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCC
Q psy8873 446 QQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPP 525 (841)
Q Consensus 446 ~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~ 525 (841)
.|+..++.+.++|+.++.+|.+..++|+.+|+|.|..||.++|+++++|++|++.......|++++++||.++.|.+++|
T Consensus 172 q~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~P 251 (534)
T KOG0358|consen 172 QYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPP 251 (534)
T ss_pred hhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCC
Confidence 99999999999999999887777889999999999999999999999999999887333589999999999999999999
Q ss_pred cccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHH
Q psy8873 526 KTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 605 (841)
Q Consensus 526 ~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~i 605 (841)
++.+++++.++++.|++++++.|++|+.+++++|++.|+|++++|++|-+|+++|+++|||.+.+|++++.+.++|++.+
T Consensus 252 Ktdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefi 331 (534)
T KOG0358|consen 252 KTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFI 331 (534)
T ss_pred CCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCCCCCCCCceeeeeEEEEEe-cCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy8873 606 CKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLV 684 (841)
Q Consensus 606 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l 684 (841)
|+.+|+.|+.+++.++++.+|+++.+++... |+.+++.+.++++.|+++||++||.+...++|.+|++|||||++|++.
T Consensus 332 ck~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLv 411 (534)
T KOG0358|consen 332 CKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLV 411 (534)
T ss_pred HhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhh
Confidence 9999999999999999999999999999754 555999999999989999999999999999999999999999999999
Q ss_pred cCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH
Q psy8873 685 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPL 764 (841)
Q Consensus 685 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~ 764 (841)
+.+.++||||+.|++++..|. +++++..|.+.|++++||+|||.||.
T Consensus 412 k~r~li~GGGapEieia~~L~---------------------------------~~a~t~eG~~~yc~rafA~AlEvIP~ 458 (534)
T KOG0358|consen 412 KKRALIAGGGAPEIEIALRLS---------------------------------ALARTLEGVEAYCWRAFADALEVIPY 458 (534)
T ss_pred hccceecCCCCcchHHHHHHH---------------------------------HHHhhhccchhHHHHHHHHHHhcccH
Confidence 999999999999999999999 88889999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 765 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 765 ~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
+|++|+|++|..++++||+.|.+|+.+.||+++.|.+.|+++..|+.|+.|-.++++.|+|++.+||+||+|+.+
T Consensus 459 tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 459 TLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred hHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-86 Score=760.20 Aligned_cols=401 Identities=35% Similarity=0.584 Sum_probs=379.0
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++..+.+.|.++++|
T Consensus 74 ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t 153 (480)
T cd03337 74 SMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKS 153 (480)
T ss_pred HHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999887788899999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCC--ccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT--NVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~--~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
++++|+.+.|.+.|++++++|+..++++.... .+|++ +|+|++++||+++||++++|++|++++...+||++++|||
T Consensus 154 ~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~k 233 (480)
T cd03337 154 CIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPR 233 (480)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCC
Confidence 99999999999999999999999997642222 46665 5999999999999999999999999994459999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++++|++ ||+++++| ++.++++|.+++|+++
T Consensus 234 Illl~~~Le~-----------------------------------------lvi~~k~I-----~d~al~~L~~~~I~~v 267 (480)
T cd03337 234 IVLLDCPLEY-----------------------------------------LVITEKGV-----SDLAQHYLVKAGITAL 267 (480)
T ss_pred EEEEecCcce-----------------------------------------EEEeCCCc-----cHHHHHHHHHCCcEEE
Confidence 9999999975 99999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
+++++++|+|||++|||++++++++++++++|+ |+.+++.+++++++++|++|+.+ +.|||+|||+|+.+++|++|++
T Consensus 268 ~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-~~~TIllrG~t~~~l~e~er~l 346 (480)
T cd03337 268 RRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-KACTILLRGASKDVLNEVERNL 346 (480)
T ss_pred EeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-CEEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999 67778888899999999999886 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++++++++|++|||||++|++++.+|+ +++.+.+++++++++
T Consensus 347 ~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~---------------------------------~~~~~~~~~~~~~~~ 393 (480)
T cd03337 347 QDAMAVARNIILNPKLVPGGGATEMAVSHALS---------------------------------EKAKSIEGVEQWPYK 393 (480)
T ss_pred HHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHH---------------------------------HHhhcCCCHHHHHHH
Confidence 99999999999999999999999999999998 667778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
+|++||+.||++|++|||+|+.+++.+|++.|.++ ..++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||
T Consensus 394 ~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~ 473 (480)
T cd03337 394 AVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLR 473 (480)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999887 57899999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q psy8873 833 IDDIVN 838 (841)
Q Consensus 833 iD~iI~ 838 (841)
||++|+
T Consensus 474 id~ii~ 479 (480)
T cd03337 474 IDDIVS 479 (480)
T ss_pred hhheec
Confidence 999985
No 20
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.4e-83 Score=736.80 Aligned_cols=399 Identities=46% Similarity=0.710 Sum_probs=381.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||+++|+++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.+.++++|
T Consensus 66 ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~t 145 (464)
T cd00309 66 LLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATT 145 (464)
T ss_pred HHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999666689999999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEE
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGL 517 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~kill 517 (841)
++++|+.+.|.+++++++++|+.++++... .+|.++|+|++.+||++.||++++|++|++++.+..||+.++||||++
T Consensus 146 sl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~--~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili 223 (464)
T cd00309 146 SLNSKLVSGGDDFLGELVVDAVLKVGKENG--DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILL 223 (464)
T ss_pred cccccccccchHHHHHHHHHHHHHhccccC--ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEE
Confidence 999999999999999999999999976332 677889999999999999999999999999994448999999999999
Q ss_pred EEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecC
Q psy8873 518 IQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597 (841)
Q Consensus 518 l~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v 597 (841)
++++|++ ||+++++| ++.++++|.+++|++++++
T Consensus 224 ~~~~Le~-----------------------------------------lIi~~~~I-----~~~al~~L~~~~I~~v~~~ 257 (464)
T cd00309 224 LDCKLEY-----------------------------------------VVIAEKGI-----DDEALHYLAKLGIMAVRRV 257 (464)
T ss_pred EecCcce-----------------------------------------EEecCCCc-----CHHHHHHHHHCCeEEEEeC
Confidence 9999975 89999999 9999999999999999999
Q ss_pred ChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Q psy8873 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 598 ~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 677 (841)
++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|.+++.+ +.|||+|||+|+.+++|++|+++||+
T Consensus 258 ~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~TIllrG~t~~~l~e~~r~i~dal 336 (464)
T cd00309 258 RKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG-KVATILLRGATEVELDEAERSLHDAL 336 (464)
T ss_pred CHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCC-CEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 89999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHH
Q psy8873 678 CVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQ 757 (841)
Q Consensus 678 ~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 757 (841)
+++++++++|++|||||++|++++.+|+ +++.+.++++++++++|++
T Consensus 337 ~~~~~~~~~~~~vpGGGa~E~~ls~~L~---------------------------------~~~~~~~~~~~~~~~~~a~ 383 (464)
T cd00309 337 CAVRAAVEDGGIVPGGGAAEIELSKALE---------------------------------ELAKTLPGKEQLGIEAFAD 383 (464)
T ss_pred HHHHHHHHcCCcccCCcHHHHHHHHHHH---------------------------------HHhcccchHHHHHHHHHHH
Confidence 9999999999999999999999999998 6666778999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhh
Q psy8873 758 ALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837 (841)
Q Consensus 758 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI 837 (841)
||+.||++|++|||+|+.+++.+|++.|.++..++|+|..+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|
T Consensus 384 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 463 (464)
T cd00309 384 ALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDII 463 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999998877789999999999999999999999999999999999999999999998
Q ss_pred c
Q psy8873 838 N 838 (841)
Q Consensus 838 ~ 838 (841)
+
T Consensus 464 ~ 464 (464)
T cd00309 464 V 464 (464)
T ss_pred C
Confidence 5
No 21
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.4e-83 Score=730.79 Aligned_cols=406 Identities=33% Similarity=0.588 Sum_probs=380.0
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhcccc-C-CccchHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP-I-TLADRENL 431 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~-~-~~~~~~~l 431 (841)
|+.+++++.+++|+.++||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ + +..+.+.+
T Consensus 62 P~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l 141 (472)
T cd03341 62 PAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEV 141 (472)
T ss_pred HHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHH
Confidence 334488899999999999999999999999999999999999999999999999999999999999875 4 33467789
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceee
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE 511 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~ 511 (841)
.++++|+++||..+ +.++|++++++|+.++++. +.+.||+++|+|++++||+.+||++++|++|++++. .+++.++
T Consensus 142 ~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~-~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~ 217 (472)
T cd03341 142 SKALKTAIASKQYG-NEDFLSPLVAEACISVLPE-NIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVK 217 (472)
T ss_pred HHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhc-cCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceecc
Confidence 99999999999876 7999999999999999753 235789999999999999999999999999988753 4568899
Q ss_pred cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCc
Q psy8873 512 KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591 (841)
Q Consensus 512 n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I 591 (841)
||+|++++++|++ |++||+++++| ++.++++|.++||
T Consensus 218 n~~Ili~~~~Le~--------------------------------------g~~lvi~~~~I-----~d~al~~l~~~~I 254 (472)
T cd03341 218 KAKVAVFSCPFDI--------------------------------------GVNVIVAGGSV-----GDLALHYCNKYGI 254 (472)
T ss_pred CCcEEEEeccccC--------------------------------------CCeEEEECCCC-----CHHHHHHHHHCCe
Confidence 9999999999985 89999999999 9999999999999
Q ss_pred EEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHH
Q psy8873 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAAR 671 (841)
Q Consensus 592 ~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r 671 (841)
++++++++++|+|||++|||++++++++++++++|+|++|++.++|+++|++|++|...++.+||+|||+|+.+++|++|
T Consensus 255 ~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er 334 (472)
T cd03341 255 MVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVER 334 (472)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998763489999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHH
Q psy8873 672 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 751 (841)
Q Consensus 672 ~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (841)
+++||++++++++++|++|||||++|++++.+|+ +++.+.+++++++
T Consensus 335 ~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~---------------------------------~~~~~~~~~~~~~ 381 (472)
T cd03341 335 AIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLK---------------------------------EYGEKTPGLEQYA 381 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHH---------------------------------HHhhccCCHHHHH
Confidence 9999999999999999999999999999999998 6666677899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCC--ccccccccCcccchHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRS 829 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~ 829 (841)
+++|++||+.||++|++|||+|+.+++.+|+..|..++.++|||+.+| ++.||++.|||||+.+|+++|+.|+|+|++
T Consensus 382 ~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 461 (472)
T cd03341 382 IKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVT 461 (472)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777899999999 999999999999999999999999999999
Q ss_pred HHchhhhhcC
Q psy8873 830 ILKIDDIVNT 839 (841)
Q Consensus 830 iL~iD~iI~~ 839 (841)
|||||++|++
T Consensus 462 iL~id~ii~~ 471 (472)
T cd03341 462 VLRVDQIIMA 471 (472)
T ss_pred Hhhhcceeec
Confidence 9999999975
No 22
>KOG0361|consensus
Probab=100.00 E-value=3.7e-82 Score=648.52 Aligned_cols=478 Identities=31% Similarity=0.491 Sum_probs=446.0
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+.+||-++.+.++|-...- .+..+..+..- .....||..+.+++.+++||.++||||||||+|++|+|+++.-+
T Consensus 38 tTLGP~GmDkLivd~~g~~-----tIsNDGATIlK-lldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpf 111 (543)
T KOG0361|consen 38 TTLGPRGMDKLIVDSKGKT-----TISNDGATILK-LLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPF 111 (543)
T ss_pred hccCccccceeeecCCCcE-----EEecCcHHHHH-HHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhH
Confidence 3567777667777754432 33333333322 23667899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc----chHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA----DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR 467 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~----~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~ 467 (841)
++.|+||..|+++|++|...|++.++++++.++.. -++.|+++|.|+++||.+....++|+++++||+..+.
T Consensus 112 iedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld---- 187 (543)
T KOG0361|consen 112 IEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLD---- 187 (543)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhc----
Confidence 99999999999999999999999999999876532 3778999999999999999999999999999999884
Q ss_pred CCcccccceEEEEccCCccccceeEEeEEEecCCCC---CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHH
Q psy8873 468 DTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSAN---VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRV 544 (841)
Q Consensus 468 ~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~---~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~ 544 (841)
...|.+.|-|+|++||+++||.+++|+.|.+.|++ ++.|++..||||+++|.+||....+.+..+.+.++++++.+
T Consensus 188 -~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~i 266 (543)
T KOG0361|consen 188 -NDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAI 266 (543)
T ss_pred -cccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHH
Confidence 34567799999999999999999999999999844 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCC
Q psy8873 545 LKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH 624 (841)
Q Consensus 545 ~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~ 624 (841)
...||+.+.++++++...|+++|++.-.| .|++.+||.+++|+|-.|++.+||.|+..++|+++.++..++.++.
T Consensus 267 VDAEW~Ii~~KL~ki~~sGAnVVLSkLpI-----GD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~ 341 (543)
T KOG0361|consen 267 VDAEWNIIYDKLDKIHESGANVVLSKLPI-----GDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEV 341 (543)
T ss_pred HhHHHHHHHHHHHHHHhcCCeEEEecccc-----hHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhh
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHh
Q psy8873 625 LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKL 704 (841)
Q Consensus 625 lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L 704 (841)
||.|..|+++++|++||.+|++|+.. +.||++|||+.++.++|.+|++|||++++|.++++..||+|||++||+||++|
T Consensus 342 LG~C~~FeE~QvG~eRyN~Fegcp~a-ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~l 420 (543)
T KOG0361|consen 342 LGTCALFEERQVGGERYNLFEGCPKA-KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYL 420 (543)
T ss_pred cchhhhHHHHhhcchhhhhhcCCCcc-ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHH
Confidence 99999999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy8873 705 TKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 784 (841)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 784 (841)
+ +|+.++++++|+.+.+|++|||.|||+||+|+|+|..+++.+||..
T Consensus 421 R---------------------------------d~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~r 467 (543)
T KOG0361|consen 421 R---------------------------------DYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQR 467 (543)
T ss_pred H---------------------------------HhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 785 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 785 ~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
|.+|..|+|+|.+++.+.|+++.+||||..||.+++..|+|+|++||.+|+.|+.
T Consensus 468 HA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn 522 (543)
T KOG0361|consen 468 HAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKN 522 (543)
T ss_pred hhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999975
No 23
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-80 Score=700.13 Aligned_cols=433 Identities=36% Similarity=0.559 Sum_probs=403.0
Q ss_pred hhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhcc
Q psy8873 361 ELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLN 440 (841)
Q Consensus 361 ~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~ 440 (841)
+.+++||.++||||||++||+++||+++.+++.+|+||+.|++||++|.+.+.++|++++++++..+.+. +++.++++
T Consensus 72 eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~ 149 (524)
T COG0459 72 EVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVA 149 (524)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh--hhhhheee
Confidence 3344556778999999999999999999999999999999999999999999999999999987544434 88999999
Q ss_pred CcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCC-ceeecceEEEE
Q psy8873 441 SKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP-KRVEKAKIGLI 518 (841)
Q Consensus 441 sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~-~~~~n~killl 518 (841)
+|..+.+ ++|++++++|+.+++... . |++.|.+++..||+.+++++++|++|++++ .+..|| +.++||+|+++
T Consensus 150 sk~~~~~-~~i~~lv~~Av~~v~~~~---~-d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~ 224 (524)
T COG0459 150 SKSANSD-EEIGELVVEAVEKVGKEQ---S-DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLL 224 (524)
T ss_pred eeeccCh-HHHHHHHHHHHHHhcccc---c-ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEE
Confidence 9988777 999999999999997532 1 778999999999999999999999999977 555899 89999999999
Q ss_pred EeecCCCcccCCcEEEEcCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEecCCcccccccHHHHHHHHhcCcEEEec
Q psy8873 519 QFCISPPKTDMDHKVVVSDYSAMDRVLKEER-AYILNIVKQIKKAGCN-VLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596 (841)
Q Consensus 519 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~-~~i~~~v~~i~~~g~~-lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~ 596 (841)
+++|++.+++.+.++.++++.+++.|.+.|+ +.+..++.++.+.+++ +++++++| +|++++||.+.+|+++++
T Consensus 225 d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi-----~D~~~~~L~d~~Ilt~~~ 299 (524)
T COG0459 225 DKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI-----DDLAKAYLEDIAILTGRR 299 (524)
T ss_pred ccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC-----cHHHHHHHHhhcceecce
Confidence 9999999999999999999999999999999 9999999999999999 99999999 999999999999999999
Q ss_pred CChhHH-HHHHHHcCCcccccCCCCCCCCcee--eeeEEEEEecCeeEEEEEccCC-CCceEEEEEeCCCHHHHHHHHHH
Q psy8873 597 IEREDI-EFVCKTLNTRPIASLDHFLPEHLSS--ADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 597 v~~~~L-~~ia~~tGa~ii~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+.++++ ++|++++||++++.++++++..+|. |..++...+++.++.+|++++. .++.|||++||+|+.+++|.+|+
T Consensus 300 v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~ 379 (524)
T COG0459 300 VKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERR 379 (524)
T ss_pred ecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHH
Confidence 999999 8999999999999999999999999 9999999999999999999876 35899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC-hhHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG-IDAYC 751 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 751 (841)
++|||+++|+++++|++|||||++|++++.+|+ +++.+.++ ++|++
T Consensus 380 i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~---------------------------------~~~~~~~g~~e~~~ 426 (524)
T COG0459 380 IEDALNVVRAAVEEGKIVPGGGAAEIEAALRLR---------------------------------EYAMTVEGGDEQLG 426 (524)
T ss_pred HHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHH---------------------------------hhhccCCchHHHHH
Confidence 999999999999999999999999999999999 55334444 89999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCcc-ccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 752 FRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI-TNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 752 i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~-~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
+++|++||+.|||+|++|||+||.+++.+|++.|. .+++|+|+.+|++ .||++.|||||+.||+++|+.|+++|.+|
T Consensus 427 i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 427 IEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999775 4569999999999 78999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
|++|++|.+.
T Consensus 505 L~~d~iI~~~ 514 (524)
T COG0459 505 LTIDDIIAAK 514 (524)
T ss_pred HHHHHhhccC
Confidence 9999999875
No 24
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.7e-79 Score=705.01 Aligned_cols=394 Identities=22% Similarity=0.319 Sum_probs=356.8
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+.+++|++++||||||+++|+++||+++.+|+++|+||..|++||++|++.++++|+++++|++ +.+.|.++|++
T Consensus 72 ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~t 149 (542)
T PRK12849 72 LVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATI 149 (542)
T ss_pred HHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 77889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcccc-ceeEEeEEEecCC-CCC------CCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVED-TELVDGLVFTQKS-ANV------NGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~d-S~li~G~v~~~~~-~~~------~m~~~ 509 (841)
+++.+ +++++++++|+..+++ ++.| .+. .|++.+| |++++|++|+++| ++. .||+.
T Consensus 150 s~~~~------~~l~~lv~~Av~~v~~---~g~i-----~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~ 213 (542)
T PRK12849 150 SANGD------EEIGELIAEAMEKVGK---DGVI-----TVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAV 213 (542)
T ss_pred hcCCh------HHHHHHHHHHHHHhcc---CCcE-----eEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEE
Confidence 98755 8999999999999974 2333 333 5878775 8999999999999 441 36899
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|+++++.+ +++++ +.++++++.+.|++|||++++| ++.++++|.++
T Consensus 214 ~~n~~Ili~d~~i-------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I-----~~~al~~l~~~ 264 (542)
T PRK12849 214 LEDPLILLTDKKI-------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDV-----EGEALATLVVN 264 (542)
T ss_pred eeCcEEEeecCCc-------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHh
Confidence 9999999999955 34433 5567899999999999999999 99999999877
Q ss_pred ------CcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 ------KVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ------~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
+|++|++++ +++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|++|..+
T Consensus 265 ~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i 341 (542)
T PRK12849 265 KLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAI 341 (542)
T ss_pred hhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHH
Confidence 999999887 55699999999999999 68999999999999999744 889999887653
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|++
T Consensus 342 ~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ 420 (542)
T PRK12849 342 EARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLR 420 (542)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHH
Confidence 4699999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ +++ +.++++|+++++|++||+.||++|++|||+|+.++++
T Consensus 421 ls~~L~---------------------------------~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~ 466 (542)
T PRK12849 421 AAKALD---------------------------------ELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVA 466 (542)
T ss_pred HHHHHH---------------------------------Hhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999998 677 7889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|++.| .++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.+
T Consensus 467 ~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~ 523 (542)
T PRK12849 467 KVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADK 523 (542)
T ss_pred HHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence 998864 469999999999999999999999999999999999999999999999763
No 25
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.6e-79 Score=702.91 Aligned_cols=395 Identities=23% Similarity=0.334 Sum_probs=360.9
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|.+.++++|+++++|++ +.++|.++|++
T Consensus 72 ll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~t 149 (542)
T PRK00013 72 LVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATI 149 (542)
T ss_pred HHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHh
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 78889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC------CCCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN------VNGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~------~~m~~~~ 510 (841)
+++++ +.+++++++|+..+++ ++ .|+|.+..| ..++|++++|++|+++| ++ +.||+.+
T Consensus 150 s~~~~------~~ls~lv~~Av~~v~~---~g-----~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~ 214 (542)
T PRK00013 150 SANGD------EEIGKLIAEAMEKVGK---EG-----VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAEL 214 (542)
T ss_pred cccch------HHHHHHHHHHHHHhCc---CC-----cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEE
Confidence 98754 8999999999999964 22 378887776 77899999999999999 44 1458899
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+||+|+++++.+ +++++ +.++++++.+.|++|||++++| ++.++++|..++
T Consensus 215 ~n~~Ilv~d~~i-------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~ 265 (542)
T PRK00013 215 ENPYILITDKKI-------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDV-----EGEALATLVVNK 265 (542)
T ss_pred ecCEEEEEcCcc-------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHcC
Confidence 999999999965 44533 5578999999999999999999 999999998775
Q ss_pred ------cEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC----
Q psy8873 591 ------VLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP---- 650 (841)
Q Consensus 591 ------I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---- 650 (841)
|++|++++ +++|+|||++|||++++ +++++++++||+|+.|++. .+++++|+++..+
T Consensus 266 ~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~ 342 (542)
T PRK00013 266 LRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIK 342 (542)
T ss_pred CcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHH
Confidence 99999886 88999999999999999 7999999999999999975 3889999887654
Q ss_pred ------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy8873 651 ------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700 (841)
Q Consensus 651 ------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~l 700 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++
T Consensus 343 ~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 343 ARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 2388999999999999999999999999999999998 999999999999
Q ss_pred HHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy8873 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 780 (841)
Q Consensus 701 s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 780 (841)
+.+|+ ++ .+.++++|+++++|++||+.|||+|++|||+|+.+++.+
T Consensus 422 s~~L~---------------------------------~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~ 467 (542)
T PRK00013 422 APALE---------------------------------AL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEK 467 (542)
T ss_pred HHHHH---------------------------------Hh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99998 66 567889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 781 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 781 l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
|++.| ++++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.
T Consensus 468 l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~ 523 (542)
T PRK00013 468 VKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVAD 523 (542)
T ss_pred HHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99887 467999999999999999999999999999999999999999999999975
No 26
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.4e-78 Score=700.26 Aligned_cols=395 Identities=19% Similarity=0.287 Sum_probs=357.1
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+.+++|++++||||||+++||++||+++.+|+++|+||..|++||++|.+.++++|+++++|++ +.+++.+++++
T Consensus 73 ll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--~~~~l~~va~~ 150 (545)
T PRK12852 73 MVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVA--SSAEIAQVGTI 150 (545)
T ss_pred HHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHhh
Confidence 7788899999999999999999999999999999999999999999999999999999999999987 56679999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCC-CCC------CCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKS-ANV------NGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~-~~~------~m~~~ 509 (841)
+++++ +.+++++++|+.++++ ++. |.+.. |+.. .++++++|+.|+++| ++. .|+..
T Consensus 151 s~~~~------~~l~~li~eA~~~vg~---~g~-----i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~ 214 (545)
T PRK12852 151 SANGD------AAIGKMIAQAMQKVGN---EGV-----ITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVE 214 (545)
T ss_pred hcCCh------HHHHHHHHHHHHHhcc---CCc-----eeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEE
Confidence 99886 8999999999999975 233 34442 6665 799999999999999 542 48899
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|+++++.+ +++ +++.++++.+.+.|++|||++++| ++.++++|..+
T Consensus 215 l~n~~Ili~d~~i-------------~~~-----------~~i~~~l~~i~~~g~~lvI~~~~i-----~~~al~~l~~n 265 (545)
T PRK12852 215 LDDAYILLHEKKL-------------SGL-----------QAMLPVLEAVVQSGKPLLIIAEDV-----EGEALATLVVN 265 (545)
T ss_pred ecCceEEEecCcc-------------CCH-----------HHHHHHHHHHHHhCcCEEEECCCC-----cHHHHHHHHHh
Confidence 9999999987754 333 367888999999999999999999 89888888754
Q ss_pred ------CcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 ------KVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ------~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
+|++|++++ +++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|.++..+
T Consensus 266 k~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i 342 (545)
T PRK12852 266 RLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADI 342 (545)
T ss_pred cccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHH
Confidence 899999776 89999999999999999 68999999999999999866 688888876542
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|++
T Consensus 343 ~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~ 421 (545)
T PRK12852 343 EARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLR 421 (545)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHH
Confidence 5889999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ +++.. ++.+|+++++|++||+.||++|++|||+|+.++++
T Consensus 422 ~s~~L~---------------------------------~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~ 467 (545)
T PRK12852 422 AKKAVG---------------------------------RINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVG 467 (545)
T ss_pred HHHHHH---------------------------------HhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999998 66655 77899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|++.| ++++|||+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+..
T Consensus 468 ~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (545)
T PRK12852 468 KILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAEL 525 (545)
T ss_pred HHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 998876 4679999999999999999999999999999999999999999999999864
No 27
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=8.1e-78 Score=697.61 Aligned_cols=395 Identities=23% Similarity=0.336 Sum_probs=357.9
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|+.++||||||+++||++||+++.+|+++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++|++
T Consensus 84 ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~t 161 (555)
T PTZ00114 84 LIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATI 161 (555)
T ss_pred HHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999999987 77889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m~~~ 509 (841)
+++++ +.+++++++|+..+++ ++ . |.+..|++.+|| ++++|++|+++| ++ +.||..
T Consensus 162 s~~~~------~~l~~li~eAv~~vg~---~g-----~--I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~ 225 (555)
T PTZ00114 162 SANGD------VEIGSLIADAMDKVGK---DG-----T--ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVE 225 (555)
T ss_pred HcCCh------HHHHHHHHHHHHHhCc---CC-----c--EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEE
Confidence 99876 8999999999999974 22 2 456679999998 899999999999 54 136899
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|++++++|+ ++ +.+.++++++.+.|++|||++++| ++.++++|..+
T Consensus 226 l~~~~Ili~d~~L~-------------~~-----------~~i~~~le~i~~~~~~llI~~~~i-----~~~al~~L~~n 276 (555)
T PTZ00114 226 LENPLILVTDKKIS-------------SI-----------QSILPILEHAVKNKRPLLIIAEDV-----EGEALQTLIIN 276 (555)
T ss_pred ecCCEEEEEcCCCC-------------CH-----------HHHHHHHHHHHHhCCCEEEECCCC-----cHHHHHHHHHh
Confidence 99999999999986 22 237788999999999999999999 99999998876
Q ss_pred C------cEEEec-----CChhHHHHHHHHcCCcccccC------CCCCCCCceeeeeEEEEEecCeeEEEEEccCC---
Q psy8873 590 K------VLVVKD-----IEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKISGIQN--- 649 (841)
Q Consensus 590 ~------I~~v~~-----v~~~~L~~ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~--- 649 (841)
+ |+++++ +++++|+|||++|||+++++. ++++++++|+|++|++++ .++++|.++..
T Consensus 277 ~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~ 353 (555)
T PTZ00114 277 KLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAE 353 (555)
T ss_pred CCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHH
Confidence 5 999987 567999999999999999997 788888999999999877 55666665430
Q ss_pred -------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHH
Q psy8873 650 -------------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 698 (841)
Q Consensus 650 -------------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~ 698 (841)
.++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|+
T Consensus 354 i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~ 432 (555)
T PTZ00114 354 IKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALL 432 (555)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHH
Confidence 34899999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc--ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 699 ELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD--TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 699 ~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
+++.+|+ +++. ..++++|+++++|++||+.||++|++|||+|+.+
T Consensus 433 ~~s~~L~---------------------------------~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~ 479 (555)
T PTZ00114 433 RASKLLD---------------------------------KLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAV 479 (555)
T ss_pred HHHHHHH---------------------------------HHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999998 5554 5788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
++++|++ .+++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||+||++|+.
T Consensus 480 v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~ 539 (555)
T PTZ00114 480 VVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVD 539 (555)
T ss_pred HHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999976 45678999999999999999999999999999999999999999999999976
No 28
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.2e-78 Score=692.00 Aligned_cols=392 Identities=24% Similarity=0.341 Sum_probs=358.6
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+++.++|+|
T Consensus 70 ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~t 147 (520)
T cd03344 70 LVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATI 147 (520)
T ss_pred HHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999999999999999997 78899999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcccc-ceeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVED-TELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~d-S~li~G~v~~~~~-~~------~~m~~~ 509 (841)
+++++ +++++++++|+..+++ ++ .|.+ .+||+..| +++++|++|++++ ++ +.|++.
T Consensus 148 s~~~~------~~l~~lv~~A~~~v~~---~~-----~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 211 (520)
T cd03344 148 SANGD------EEIGELIAEAMEKVGK---DG-----VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVE 211 (520)
T ss_pred hcCCh------HHHHHHHHHHHHHhcc---CC-----cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEE
Confidence 99976 8999999999999964 22 2444 36888888 7999999999998 44 124578
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|++++++| +++++ +.++++++.+.|++|||++++| ++.++++|.++
T Consensus 212 ~~n~~Ili~d~~l-------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i-----~~~al~~l~~~ 262 (520)
T cd03344 212 LENPYILLTDKKI-------------SSIQE-----------LLPILELVAKAGRPLLIIAEDV-----EGEALATLVVN 262 (520)
T ss_pred eeCCEEEEECCCC-------------CCHHH-----------HHHHHHHHHhhCCCEEEEcCCC-----CHHHHHHHHHc
Confidence 9999999999996 34433 6667899999999999999999 99999999988
Q ss_pred Cc------EEEecC-----ChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 KV------LVVKDI-----EREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ~I------~~v~~v-----~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
++ ++++++ ++++|+|||++|||++++ ++++++++++|+|+.|++.+ +++++++++..+
T Consensus 263 ~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i 339 (520)
T cd03344 263 KLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAI 339 (520)
T ss_pred CCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHH
Confidence 88 999877 899999999999999999 78899989999999999866 788999877653
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++
T Consensus 340 ~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~ 418 (520)
T cd03344 340 KARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLR 418 (520)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHH
Confidence 3699999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ +++. .++++++++++|++||+.||++|++|||+|+.++++
T Consensus 419 ~s~~L~---------------------------------~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~ 464 (520)
T cd03344 419 ASPALD---------------------------------KLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVE 464 (520)
T ss_pred HHHHHH---------------------------------Hhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999 6776 889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhc
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVN 838 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~ 838 (841)
+|++.|. ++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||.+|.
T Consensus 465 ~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 465 KVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 9998764 799999999999999999999999999999999999999999999986
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-77 Score=692.43 Aligned_cols=395 Identities=22% Similarity=0.301 Sum_probs=358.7
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|++.++++|+++++|++ +.+.+.+++++
T Consensus 73 ll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~ 150 (541)
T PRK12851 73 MVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATI 150 (541)
T ss_pred HHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 67889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCC------CCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANV------NGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~------~m~~~~ 510 (841)
+++.+ +.+++++++|+..+++ ++ .+.|.+.. ++..++++++|++|+++| ++. .||+.+
T Consensus 151 s~~~~------~~l~~lv~~Av~~vg~---~g-----~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 215 (541)
T PRK12851 151 SANGD------AEIGRLVAEAMEKVGN---EG-----VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAEL 215 (541)
T ss_pred hccCh------HHHHHHHHHHHHHhcc---cC-----ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEe
Confidence 88644 8999999999999974 23 35666655 467889999999999999 541 499999
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+||+|++++++++ +. +.+.++++++.+.|++|||++++| ++.++++|..++
T Consensus 216 ~~~~Ilv~d~~i~-------------~~-----------~~i~~~l~~i~~~~~~lvi~~~~I-----~~~al~~l~~n~ 266 (541)
T PRK12851 216 EDPYILIHEKKIS-------------NL-----------QDLLPVLEAVVQSGKPLLIIAEDV-----EGEALATLVVNK 266 (541)
T ss_pred cccEEEEEcCCcC-------------cH-----------HHHHHHHHHHHHhCcCEEEECCCC-----ChHHHHHHHHcC
Confidence 9999999999853 22 237788999999999999999999 999999999888
Q ss_pred c------EEEec-----CChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC----
Q psy8873 591 V------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP---- 650 (841)
Q Consensus 591 I------~~v~~-----v~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---- 650 (841)
| ++|++ +++++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|.+|..+
T Consensus 267 i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~ 343 (541)
T PRK12851 267 LRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIE 343 (541)
T ss_pred CcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHH
Confidence 6 99996 8899999999999999999 68899999999999999866 888999887653
Q ss_pred ------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy8873 651 ------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700 (841)
Q Consensus 651 ------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~l 700 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|+++
T Consensus 344 ~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~ 422 (541)
T PRK12851 344 GRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (541)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHH
Confidence 2388999999999999999999999999999999998 999999999999
Q ss_pred HHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy8873 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 780 (841)
Q Consensus 701 s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 780 (841)
+.+|+ +++.. ++++++++++|++||+.||++|++|||+|+.+++.+
T Consensus 423 s~~L~---------------------------------~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~ 468 (541)
T PRK12851 423 VKALD---------------------------------KLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGK 468 (541)
T ss_pred HHHHH---------------------------------HHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998 66655 889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 781 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 781 l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+||++|+..
T Consensus 469 l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~ 524 (541)
T PRK12851 469 LREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEK 524 (541)
T ss_pred HHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcC
Confidence 98865 369999999999999999999999999999999999999999999999864
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-77 Score=692.52 Aligned_cols=395 Identities=20% Similarity=0.313 Sum_probs=356.9
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|++.++++|+++++|++ +.++|.+++++
T Consensus 73 ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~ 150 (544)
T PRK12850 73 MVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATI 150 (544)
T ss_pred HHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999999999999999999999999999987 77889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCC------CCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANV------NGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~------~m~~~~ 510 (841)
+++++ +.+++++++|+..+++ ++.++++.+ +..| .++++++|++|+++| ++. .||+.+
T Consensus 151 s~~~~------~~l~~lv~eAv~~vg~---~g~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~ 215 (544)
T PRK12850 151 SANGD------ESIGEMIAEAMDKVGK---EGVITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAEL 215 (544)
T ss_pred hcCCH------HHHHHHHHHHHHHhcc---cCceeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEE
Confidence 98886 8999999999999975 244444332 2223 688999999999998 541 258899
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+||+|+++++.++ +. +.+.++++++.+.|++|||++++| ++.++++|..++
T Consensus 216 ~n~~Ill~d~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~I-----~d~al~~l~~n~ 266 (544)
T PRK12850 216 EDPYILLHEKKIS-------------NL-----------QDLLPILEAVVQSGRPLLIIAEDV-----EGEALATLVVNK 266 (544)
T ss_pred eCCEEEEEecccC-------------CH-----------HHHHHHHHHHHHhCCCEEEECCCC-----ChHHHHHHHHcC
Confidence 9999999999652 22 248888999999999999999999 999999999999
Q ss_pred c------EEEec-----CChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC----
Q psy8873 591 V------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP---- 650 (841)
Q Consensus 591 I------~~v~~-----v~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---- 650 (841)
| ++|++ +++++|+|||++|||++++ +++++++++||+|++|++.+ +++++|++|..+
T Consensus 267 i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~ 343 (544)
T PRK12850 267 LRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIE 343 (544)
T ss_pred CcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHH
Confidence 8 99998 7899999999999999999 68999999999999999765 788999887653
Q ss_pred ------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHH
Q psy8873 651 ------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700 (841)
Q Consensus 651 ------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~l 700 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| ||||||++|+++
T Consensus 344 ~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~ 422 (544)
T PRK12850 344 ARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (544)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 3589999999999999999999999999999999997 999999999999
Q ss_pred HHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q psy8873 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 780 (841)
Q Consensus 701 s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~ 780 (841)
+.+|+ ++ .+.++++|+++++|++||+.||++|++|||+|+.+++.+
T Consensus 423 s~~L~---------------------------------~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~ 468 (544)
T PRK12850 423 RSALR---------------------------------GL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGK 468 (544)
T ss_pred HHHHH---------------------------------hc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998 55 567889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 781 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 781 l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|++.
T Consensus 469 l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~ 524 (544)
T PRK12850 469 VAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEA 524 (544)
T ss_pred HHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 98865 368999999999999999999999999999999999999999999999864
No 31
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.2e-77 Score=693.17 Aligned_cols=399 Identities=21% Similarity=0.292 Sum_probs=348.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||++||+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++ +.+.|.++|++
T Consensus 72 li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~t 149 (529)
T CHL00093 72 LIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASI 149 (529)
T ss_pred HHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Confidence 6667777888899999999999999999999999999999999999999999999999999999997 78889999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC------CCCCcee
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN------VNGPKRV 510 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~------~~m~~~~ 510 (841)
+++.+ +.|++|+++|+.++++ ++.| .+.. .+++..++++++|++|+++| ++ +.|+..+
T Consensus 150 s~~~~------~~l~~lv~eAv~~vg~---~g~i-----~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l 214 (529)
T CHL00093 150 SAGND------EEVGSMIADAIEKVGR---EGVI-----SLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQ 214 (529)
T ss_pred hccCh------HHHHHHHHHHHHHhcc---CCce-----eecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEe
Confidence 99855 8999999999999974 2333 3321 22345788999999999999 44 1233358
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh--
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK-- 588 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~-- 588 (841)
+||+|++++++|++.+ ..+.++++++.+.++++||++++|++++| ...++.+
T Consensus 215 ~n~~Ili~d~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al---~~l~l~k~~ 268 (529)
T CHL00093 215 ENPYILLTDKKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEAL---ATLVLNKLR 268 (529)
T ss_pred cCceehhhcCCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHH---HHHHHhhhc
Confidence 9999999999998532 24888999999999999999999933333 3344465
Q ss_pred --cCcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEc---------c
Q psy8873 589 --IKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISG---------I 647 (841)
Q Consensus 589 --~~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~ 647 (841)
++|++|++++ +++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++|++ |
T Consensus 269 g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~ 345 (529)
T CHL00093 269 GIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARC 345 (529)
T ss_pred ccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHH
Confidence 5999999984 58899999999999999 79999999999999999864 67888863 2
Q ss_pred CC------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHH
Q psy8873 648 QN------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703 (841)
Q Consensus 648 ~~------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~ 703 (841)
+. ++..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~ 424 (529)
T CHL00093 346 EQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSEN 424 (529)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHH
Confidence 21 22588899999999999999999999999999999998 999999999999999
Q ss_pred hhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy8873 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD-TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 782 (841)
Q Consensus 704 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~ 782 (841)
|+ +++. +.++++|+++++|++||+.||++||+|||+|+.+++.+++
T Consensus 425 L~---------------------------------~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~ 471 (529)
T CHL00093 425 LK---------------------------------TWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQ 471 (529)
T ss_pred HH---------------------------------HHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 98 6765 6889999999999999999999999999999999999997
Q ss_pred HHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 783 NRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 783 ~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
.. +.++|||+.+|++.||++.|||||+.||.++|+.|+|+|++||+||++|+.+
T Consensus 472 ~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 525 (529)
T CHL00093 472 EQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDK 525 (529)
T ss_pred cc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 53 4579999999999999999999999999999999999999999999999864
No 32
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=3.9e-77 Score=688.28 Aligned_cols=393 Identities=21% Similarity=0.310 Sum_probs=353.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|++++||||||+++|+++||+++.+|+++|+||..|++||++|.+.++++|+++++|++ +.+.+.+++++
T Consensus 71 ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~t 148 (524)
T TIGR02348 71 LVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATI 148 (524)
T ss_pred HHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999999999987 78899999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCC-CCC------CCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKS-ANV------NGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~-~~~------~m~~~ 509 (841)
+++++ +++++++++|+..+++ ++. |.|.. |+.. ++|++++|++|+++| ++. .||+.
T Consensus 149 s~~~~------~~l~~lv~~A~~~v~~---~~~-----i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~ 212 (524)
T TIGR02348 149 SANND------EEIGSLIAEAMEKVGK---DGV-----ITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVE 212 (524)
T ss_pred hccCh------HHHHHHHHHHHHHhCc---CCc-----Eeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEE
Confidence 98764 8999999999999975 232 34443 5555 679999999999999 541 25888
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhc
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~ 589 (841)
++||+|+++++.+ ++++ ++.++++++.+.|++|||++++| ++.++++|..+
T Consensus 213 ~~n~~Ili~d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvi~~~~i-----~~~al~~l~~n 263 (524)
T TIGR02348 213 LENPYILITDKKI-------------SNIK-----------DLLPLLEKVAQSGKPLLIIAEDV-----EGEALATLVVN 263 (524)
T ss_pred eeCceeeeccCCc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCC-----ChHHHHHHHHh
Confidence 9999999999965 3443 36788999999999999999999 99999888865
Q ss_pred ------CcEEEecCCh-----hHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 590 ------KVLVVKDIER-----EDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 590 ------~I~~v~~v~~-----~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
+|++|++++. ++|+|||++|||++++ +++++++++||+|+.|++.+ +++++|+++..+
T Consensus 264 ~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~ 340 (524)
T TIGR02348 264 KLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAI 340 (524)
T ss_pred hcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHH
Confidence 8999998854 8999999999999999 89999999999999999754 788899876542
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++|+++++| ||||||++|++
T Consensus 341 ~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~ 419 (524)
T TIGR02348 341 KARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLR 419 (524)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHH
Confidence 3479999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ + +.+.++++++++++|++||+.||++|++|||+|+.++++
T Consensus 420 ~s~~L~---------------------------------~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~ 465 (524)
T TIGR02348 420 AAAALE---------------------------------G-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAE 465 (524)
T ss_pred HHHHHH---------------------------------H-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999998 5 556788999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
+|++. .+ ++|||+.+|++.||++.|||||+.+|.++|+.|+++|++||+||++|+.
T Consensus 466 ~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 466 KVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred HHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 99864 22 4899999999999999999999999999999999999999999999975
No 33
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.6e-76 Score=683.67 Aligned_cols=402 Identities=21% Similarity=0.316 Sum_probs=351.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++.+++++|+.++||||||++||+++||+++.+++++|+||..|++||++|.+.+++.|++++.|++ + ++|.++|++
T Consensus 128 ll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~t 204 (600)
T PLN03167 128 LVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAV 204 (600)
T ss_pred HHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999986 4 579999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m~~~ 509 (841)
+++++ +.|++|+++|+.++++ ++. |.+. .|++.+|+ ++++|++|+++| ++ ++|++.
T Consensus 205 S~~~~------~~i~~liaeAv~~Vg~---~g~-----i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~ 268 (600)
T PLN03167 205 SAGNN------YEVGNMIAEAMSKVGR---KGV-----VTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVE 268 (600)
T ss_pred hccCc------HHHHHHHHHHHHHhcc---CCc-----EEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEE
Confidence 99987 8999999999999974 232 3333 58888887 999999999999 44 278999
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH-h
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-K 588 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~-~ 588 (841)
++||+|+++++.+ +++++ +.++++.+.+.++++||++++|++++|+.++.+.++ .
T Consensus 269 l~np~Ill~d~~i-------------~~~~~-----------l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~ 324 (600)
T PLN03167 269 YDNCKLLLVDKKI-------------TNARD-----------LIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGS 324 (600)
T ss_pred EeCCEEEEEcccc-------------CCHHH-----------HHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcccc
Confidence 9999999998754 55544 455667888899999999999944444444444444 7
Q ss_pred cCcEEEecCC-----hhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEE-----ecC--------eeEEEEE
Q psy8873 589 IKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIP-----AGN--------SRFVKIS 645 (841)
Q Consensus 589 ~~I~~v~~v~-----~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~ 645 (841)
.+|++|++++ +++|+|||.+|||++++ +++++++++||+|+.|++.+ +|+ +++.+|+
T Consensus 325 ~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~ 404 (600)
T PLN03167 325 LKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIK 404 (600)
T ss_pred ceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHH
Confidence 8999999996 88999999999999999 68899999999999999987 776 4788877
Q ss_pred ccC------------------CCCceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhh
Q psy8873 646 GIQ------------------NPGRTLTVV-VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706 (841)
Q Consensus 646 ~~~------------------~~~~~~TIl-lrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~ 706 (841)
++. .+ +.+|++ +||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|+
T Consensus 405 ~~~~~~~~~~~~~~l~~Ri~~l~-g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~- 481 (600)
T PLN03167 405 NLIEAAEQDYEKEKLNERIAKLS-GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVD- 481 (600)
T ss_pred hhhhccCCHHHHHHHHHHHhhcC-CcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHH-
Confidence 643 23 345555 999999999999999999999999999999 99999999999999998
Q ss_pred cccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy8873 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY-CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH 785 (841)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~ 785 (841)
+++...++++|+ ++++|++||+.|||+||+|||+|+.+++.+|+..
T Consensus 482 --------------------------------~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~- 528 (600)
T PLN03167 482 --------------------------------AIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN- 528 (600)
T ss_pred --------------------------------HHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc-
Confidence 666666777775 4999999999999999999999999999999753
Q ss_pred hcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 786 AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 786 ~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||+||++|+..
T Consensus 529 --~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~ 581 (600)
T PLN03167 529 --DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEI 581 (600)
T ss_pred --CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35689999999999999999999999999999999999999999999999864
No 34
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.9e-75 Score=674.66 Aligned_cols=395 Identities=19% Similarity=0.288 Sum_probs=352.5
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAAT 437 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t 437 (841)
++++++++|++++||||||+++||++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+++.+++++
T Consensus 73 ll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~--~~~~l~~va~~ 150 (546)
T PRK14104 73 MVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVT--SNDEIAQVGTI 150 (546)
T ss_pred HHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999999999999999997 45679999999
Q ss_pred hccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcc-ccceeEEeEEEecCC-CC------CCCCce
Q psy8873 438 SLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTV-EDTELVDGLVFTQKS-AN------VNGPKR 509 (841)
Q Consensus 438 ~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~-~dS~li~G~v~~~~~-~~------~~m~~~ 509 (841)
++++| +.+++++++|+..+++ ++ .|.+.. +++. +++++++|++|+++| ++ +.|+..
T Consensus 151 s~~~d------~~i~~lv~~Av~~vg~---~g-----~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~ 214 (546)
T PRK14104 151 SANGD------AEIGKFLADAMKKVGN---EG-----VITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVE 214 (546)
T ss_pred HhcCc------hHHHHHHHHHHHHhcc---CC-----ceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCcee
Confidence 99988 8899999999999975 34 344443 2345 589999999999999 44 133677
Q ss_pred eecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh-
Q psy8873 510 VEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK- 588 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~- 588 (841)
+++|+|++++.. ++++ +++.++++++.+.|++|||++++| ++.++++|..
T Consensus 215 ~~~~~Ilv~d~~-------------i~~~-----------~~i~~~l~~i~~~g~~lvI~~~~i-----~~~al~~l~~N 265 (546)
T PRK14104 215 MDDAYILINEKK-------------LSSL-----------NELLPLLEAVVQTGKPLVIVAEDV-----EGEALATLVVN 265 (546)
T ss_pred eeCcEEEEehhh-------------hcCH-----------HHHHHHHHHHHHhCcCEEEECCCC-----cHHHHHHHHhC
Confidence 889999988733 3444 237788999999999999999999 8888888873
Q ss_pred -----cCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC---
Q psy8873 589 -----IKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--- 650 (841)
Q Consensus 589 -----~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--- 650 (841)
.+|++|++++ +++|+|||.+|||+++++ ++++++++||+|+++++ ++++++++++|..+
T Consensus 266 k~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i 342 (546)
T PRK14104 266 RLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADI 342 (546)
T ss_pred cccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHH
Confidence 6899998887 899999999999999999 89999999999999884 77899999987663
Q ss_pred -------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHH
Q psy8873 651 -------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIE 699 (841)
Q Consensus 651 -------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ 699 (841)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++
T Consensus 343 ~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~ 421 (546)
T PRK14104 343 EARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLR 421 (546)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHH
Confidence 5899999999999999999999999999999999998 99999999999
Q ss_pred HHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 700 LSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 779 (841)
Q Consensus 700 ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~ 779 (841)
++.+|+ ++. ..++++++++++|++||+.||++|++|||+|+.+++.
T Consensus 422 ~s~~L~---------------------------------~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~ 467 (546)
T PRK14104 422 ASEQLK---------------------------------GIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVG 467 (546)
T ss_pred HHHHHH---------------------------------Hhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHH
Confidence 999998 443 3478899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 780 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 780 ~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+|+..| .+++|+|+.+|++.||++.|||||+.||.++|++|+++|++||+||++|..+
T Consensus 468 ~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~ 525 (546)
T PRK14104 468 KILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAEL 525 (546)
T ss_pred HHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998653 4579999999999999999999999999999999999999999999999653
No 35
>KOG0363|consensus
Probab=100.00 E-value=3.8e-75 Score=593.08 Aligned_cols=460 Identities=34% Similarity=0.526 Sum_probs=431.0
Q ss_pred eeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy8873 335 LLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414 (841)
Q Consensus 335 ~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~ 414 (841)
..|+.+..+..-+. ..--|..+++++.++-||.++|||||||++|+++||++|.+|+.+.+||+.|+.||++|...|++
T Consensus 56 v~VTNDGAtILksi-~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~e 134 (527)
T KOG0363|consen 56 VMVTNDGATILKSI-GVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALE 134 (527)
T ss_pred eEEecchHHHHHhc-CCCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHH
Confidence 35565554443332 33346778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCc---cchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCcccccee
Q psy8873 415 ILTEMSTPITL---ADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTEL 491 (841)
Q Consensus 415 ~L~~~s~~~~~---~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~l 491 (841)
.|.+.++.... .-+++|+++++|.++||+++...++|++|+++|+.++. +.-|++.|+|+|..||+++||++
T Consensus 135 aL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLk-----Gs~nL~~IqIIK~~Gg~l~dSfL 209 (527)
T KOG0363|consen 135 ALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLK-----GSTNLEAIQIIKKLGGKLEDSFL 209 (527)
T ss_pred HHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-----CCCCccceeeehhcCCccccccc
Confidence 99988874221 13789999999999999999999999999999999994 45577889999999999999999
Q ss_pred EEeEEEecCCCCCCCCceeecceEEEEEeecCCCccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEec
Q psy8873 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQ 570 (841)
Q Consensus 492 i~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~ 570 (841)
-+|+++++.+.. +.|+.++|+||++-|.+++..+.+ +...+.+++...+.++...|++.+++++++|.+.|+|+.+..
T Consensus 210 DeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNR 288 (527)
T KOG0363|consen 210 DEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINR 288 (527)
T ss_pred cccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeh
Confidence 999999999854 679999999999999999999999 888899999999999999999999999999999999999999
Q ss_pred CCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 571 KSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 571 ~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
.-| .++-.++|...||+++.+.+.+-+||++.+||+.++++|++++...+|+|+.+++..+|++++++|++++..
T Consensus 289 QLi-----YnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~G 363 (527)
T KOG0363|consen 289 QLI-----YNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLG 363 (527)
T ss_pred hHh-----hcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccc
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCch
Q psy8873 651 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPE 730 (841)
Q Consensus 651 ~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (841)
..|||+|||+|++++||.+|++||||+++....++.+++.||||.||.++..+.
T Consensus 364 -eActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~------------------------- 417 (527)
T KOG0363|consen 364 -EACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVD------------------------- 417 (527)
T ss_pred -cceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHH-------------------------
Confidence 899999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcc
Q psy8873 731 IELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVV 810 (841)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~ 810 (841)
+++...++++..++++|++||..+|.+||.|+|||+.+++++||+.|+.|...+|+|.++|++.||.+.||+
T Consensus 418 --------~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~ 489 (527)
T KOG0363|consen 418 --------KEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIV 489 (527)
T ss_pred --------HHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhH
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 811 QPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 811 D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|++.+|.+.+.+|.|++.||||+|.||+..
T Consensus 490 es~~vK~~vv~sasEaae~ilrvD~Iik~a 519 (527)
T KOG0363|consen 490 ESLKVKQAVVSSASEAAEMILRVDNIIKAA 519 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhcC
Confidence 999999999999999999999999999864
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=5.2e-74 Score=666.81 Aligned_cols=477 Identities=36% Similarity=0.579 Sum_probs=445.8
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
++|||.++.+.+.|... ...++.++.+..-+. ...+|+.+++.+.+++|+.++||||||+++|+++||+++.++
T Consensus 7 sslGP~G~~kli~~~~g-----~~~iTndg~tIl~~l-~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 7 SSLGPKGRDKLIVNDSG-----KIIITNDGATILKSL-KINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp CCSSTTS-EEEEEESSS-----SEEEESSHHHHHHHS-TBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCeEEEEcCCC-----CeEEEechhHHHHHh-hhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 47999998887877322 348899998887766 779999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNV 471 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~ 471 (841)
+++|+||..|++||+.|.+.+++.|++++++++..+ +.+.+++++++++|+.+.|.++|++++++|+ ...++ .+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~-~~~~~----~~ 154 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAI-KSIKS----NF 154 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH-HHHTT----TH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHH-Hhhcc----cc
Confidence 999999999999999999999999999999887422 8999999999999999999999999999999 44331 27
Q ss_pred cccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHH
Q psy8873 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551 (841)
Q Consensus 472 d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~ 551 (841)
|++.+.++++.||+.+||++++|++|++++.+.+||+.+++|||++++++|++++. ++.++.++++++++.+.++|+++
T Consensus 155 ~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~ 233 (485)
T PF00118_consen 155 DLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKY 233 (485)
T ss_dssp HGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHH
T ss_pred cccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhh
Confidence 88889999999999999999999999999955489999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeE
Q psy8873 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLV 631 (841)
Q Consensus 552 i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v 631 (841)
++++++++.+.|+++|+++++| ++.++++|.+++|++++++++++|++||++|||++++++++++++++|+|+++
T Consensus 234 l~~~~~~i~~~~~~lIi~~~~i-----~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v 308 (485)
T PF00118_consen 234 LKKILEKIINLGVNLIISQKSI-----DDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSV 308 (485)
T ss_dssp HHHHHHHHHTTTSSEEEESSEB-----THHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEE
T ss_pred hccccceEeeeccceeeeeccc-----ccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999889999999
Q ss_pred EEEEecCeeEEEEE--ccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhccc
Q psy8873 632 EEIPAGNSRFVKIS--GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709 (841)
Q Consensus 632 ~~~~ig~~~~~~~~--~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~ 709 (841)
++..+++++|++|+ ++... +.+||+|||+++.+++|++|+++||+++++++++++++|||||++|++|+.+|+
T Consensus 309 ~~~~i~~~~~~~~~~~~~~~~-~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~---- 383 (485)
T PF00118_consen 309 EEREIGNKKYIFIEGIGCLSS-KICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALR---- 383 (485)
T ss_dssp EEEEETSSEEEEEEEHSESSS-SEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHH----
T ss_pred hhccccccccccccccccccc-CceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHH----
Confidence 99999999999999 46655 999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q psy8873 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE 789 (841)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~ 789 (841)
+++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.+.
T Consensus 384 -----------------------------~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~ 434 (485)
T PF00118_consen 384 -----------------------------KYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN 434 (485)
T ss_dssp -----------------------------HHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT
T ss_pred -----------------------------HhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc
Confidence 677778899999999999999999999999999999999999999886644
Q ss_pred CceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCCC
Q psy8873 790 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTLN 841 (841)
Q Consensus 790 ~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 841 (841)
++|+|..+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|++++
T Consensus 435 -~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 435 -NYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp -TEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred -ccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999875
No 37
>KOG0362|consensus
Probab=100.00 E-value=1.3e-73 Score=605.71 Aligned_cols=477 Identities=29% Similarity=0.459 Sum_probs=445.4
Q ss_pred CCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHH
Q psy8873 310 GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAE 389 (841)
Q Consensus 310 ~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~ 389 (841)
-.+.||++++++.++|+.++ ..|+.+|-+.--+. ...||..++++++++.|+.+.||||+++|+|+++||++|+
T Consensus 42 ~rs~yGpng~nK~vvnh~~k-----~~~TndaatIlrel-ev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae 115 (537)
T KOG0362|consen 42 IRSAYGPNGRNKMVVNHLGK-----TFVTNDAATILREL-EVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAE 115 (537)
T ss_pred HHhhcCCCCcceeeecccce-----EEEcCChHHHHHHh-hccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHH
Confidence 34689999999999999887 47888888877766 8899999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHhhcccc--CCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCC
Q psy8873 390 KLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP--ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR 467 (841)
Q Consensus 390 ~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~--~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~ 467 (841)
+|+..|++|.+|++||+.|.+.+++.|+++.+. .+..|.+ ..+++++++| .+...+++++++++|+..+.+.
T Consensus 116 ~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~sk-q~~~ed~l~~lVa~ac~si~p~-- 189 (537)
T KOG0362|consen 116 ELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSK-QYGNEDFLTKLVAKACVSILPL-- 189 (537)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHh-hcchHHHHHHHHHHHHHhhccc--
Confidence 999999999999999999999999999998653 2222444 7888999988 5788999999999999999873
Q ss_pred CCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHH
Q psy8873 468 DTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKE 547 (841)
Q Consensus 468 ~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~ 547 (841)
+.|+.|+|+++|+.||+..+|+++.|++|++.. .+.++..+..||++++|+++...+++++++.+++++++.+|.+.
T Consensus 190 -~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~--eG~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKg 266 (537)
T KOG0362|consen 190 -MSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDP--EGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKG 266 (537)
T ss_pred -ccccccceEEEEEecCCcccceeeEEEEecccc--CCcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccc
Confidence 449999999999999999999999999999995 34468888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee
Q psy8873 548 ERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS 627 (841)
Q Consensus 548 E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~ 627 (841)
|+..+...++.|...|+++|++.+.+ +++++|||++++|++++..++.||+|+|+..||++++++..+.++.+|+
T Consensus 267 Ee~lle~~vk~Ia~~gvkViV~~g~V-----~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~ 341 (537)
T KOG0362|consen 267 EEALLEEQVKAIADAGVKVIVSGGKV-----DEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGY 341 (537)
T ss_pred cHHHHHHHHHHHHhcCCeEEEecCcc-----chhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhc
Q psy8873 628 ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 707 (841)
Q Consensus 628 ~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~ 707 (841)
|++|...++|+.+++.|+.-...+++.|++|||+++..+|+.||+++|+++..+...++++++||+|++|++|+..|.
T Consensus 342 ~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~-- 419 (537)
T KOG0362|consen 342 CDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQIS-- 419 (537)
T ss_pred cceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHH--
Confidence 999999999999999998755445999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q psy8873 708 ADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ 787 (841)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~ 787 (841)
+|+..++|.+|++++.|++||+.+||+|++|+|++..+++++|+..|.
T Consensus 420 -------------------------------~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~- 467 (537)
T KOG0362|consen 420 -------------------------------SRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ- 467 (537)
T ss_pred -------------------------------HhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-
Confidence 889999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEccCC-ccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 788 GETTTGINVRKG-AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 788 ~~~~~Gid~~~g-~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+..+.|+|+... ...|+.++||||.+..|.++++.|+|+|.++|++|+||+++
T Consensus 468 ~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 468 GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred CCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 445588888776 48999999999999999999999999999999999999986
No 38
>KOG0364|consensus
Probab=100.00 E-value=4.4e-73 Score=591.46 Aligned_cols=450 Identities=29% Similarity=0.482 Sum_probs=431.5
Q ss_pred HHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchH
Q psy8873 350 RSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRE 429 (841)
Q Consensus 350 ~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~ 429 (841)
..-||...-+.+.+.+||+++|||||||++|++|+|.++..++++|+||+.|+++|.+|++.++..+++++.|++..+..
T Consensus 69 ~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~ 148 (527)
T KOG0364|consen 69 DVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQA 148 (527)
T ss_pred hhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHH
Confidence 44567777777999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccc-cceEEEEccCCccccceeEEeEEEecCC-CCCCCC
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL-KDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP 507 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~-~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~ 507 (841)
.++.++.++..+|+.+.|++.++.+..+|+.+++..+ +..||+ ++.++.|++||.+.+|++++|+.++++. || .|.
T Consensus 149 km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~-g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hp-kmr 226 (527)
T KOG0364|consen 149 KMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVEN-GREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHP-KMR 226 (527)
T ss_pred HHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhcc-CceechhhhccccccCcccccccceecceeeccccCcH-HHH
Confidence 9999999999999999999999999999999998753 236888 4999999999999999999999999999 77 899
Q ss_pred ceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH
Q psy8873 508 KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 587 (841)
Q Consensus 508 ~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~ 587 (841)
+.++||+++||+|+|+|.+.+.+..+.+...+++...++-|++++..+++.|....++||++++++ +++++|||.
T Consensus 227 r~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~-----sdla~hyl~ 301 (527)
T KOG0364|consen 227 RAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGV-----SDLAQHYLL 301 (527)
T ss_pred HHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccch-----hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 588 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 588 ~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
+.||.+++++++.|-.|+++++||+++++.+++.+.+.|+ |+.+++.++|+++|.||..|..+ +.|||++|||+..++
T Consensus 302 k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p-kaCtillrg~skdil 380 (527)
T KOG0364|consen 302 KANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP-KACTILLRGPSKDIL 380 (527)
T ss_pred hcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCC-cceEEEeccCchhHH
Confidence 9999999999999999999999999999999999999995 88999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|++|.++||+.+.|+.+-+|+++||||++||.+|..|+ +.+...++
T Consensus 381 ~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~---------------------------------qksa~~~G 427 (527)
T KOG0364|consen 381 NEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELR---------------------------------QKSALMTG 427 (527)
T ss_pred HHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHH---------------------------------HHHhhccc
Confidence 999999999999999999999999999999999999998 66677889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
.+++.+.+.|.||+.+||+|++|||.+++..++.++..|..+...+|+|..+|.+.||.+.++|||+.+|.+..++|++.
T Consensus 428 VekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktaves 507 (527)
T KOG0364|consen 428 VEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVES 507 (527)
T ss_pred hhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
++++||||+|+..+
T Consensus 508 a~~LLRIddIvsg~ 521 (527)
T KOG0364|consen 508 ACLLLRIDDIVSGK 521 (527)
T ss_pred HHHHHhhhceeeee
Confidence 99999999998753
No 39
>KOG0361|consensus
Probab=100.00 E-value=7.2e-72 Score=572.73 Aligned_cols=347 Identities=35% Similarity=0.566 Sum_probs=332.4
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
|.+.|..+..+||.+|..+++++||||||+||||+|++..|+.+|+|||+||+|.+++.||+||++
T Consensus 14 d~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDG 93 (543)
T KOG0361|consen 14 DPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDG 93 (543)
T ss_pred CcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCC
Confidence 557789999999999999999999999999999999999999999999999999999999988763
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 94 TTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~ 173 (543)
T KOG0361|consen 94 TTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKE 173 (543)
T ss_pred ceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------------------------------------------cc
Q psy8873 85 ------------------------------------------------------------------------------DH 86 (841)
Q Consensus 85 ------------------------------------------------------------------------------~~ 86 (841)
+.
T Consensus 174 fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNA 253 (543)
T KOG0361|consen 174 FFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNA 253 (543)
T ss_pred HHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCc
Confidence 24
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++++++.++|+.+.+.||+.+.+.+++|.++|+++|+..-. |.|+|.|||.+++|.|.++++.+||.|+..++|+
T Consensus 254 EiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLp-----IGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGG 328 (543)
T KOG0361|consen 254 EIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLP-----IGDLATQYFADRDIFCAGRVPEEDLNRVMQACGG 328 (543)
T ss_pred eeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEeccc-----chHHHHHHhhccCceecCcCCHHHHHHHHHhcCc
Confidence 78889999999999999999999999999999999998765 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIA 246 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvp 246 (841)
.+.++..++.++.||+|..|+++++|++||.+|+||+.. +.||++|||+.+++++|.+|++|||++++|.|+++..+|+
T Consensus 329 si~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a-ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVa 407 (543)
T KOG0361|consen 329 SIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA-KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVA 407 (543)
T ss_pred chhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc-ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEee
Confidence 999999999999999999999999999999999999974 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccc
Q psy8873 247 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326 (841)
Q Consensus 247 GgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~ 326 (841)
|||+.||++|++|++|+.++.|++|+.+.+|++|||.|||+||+|||+|+.+++++||.+|++|+.|||+|..++.+.|+
T Consensus 408 GGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn 487 (543)
T KOG0361|consen 408 GGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADN 487 (543)
T ss_pred CCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCC
Q psy8873 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAG 371 (841)
Q Consensus 327 ~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~G 371 (841)
++.+||||..||.+|++.|+|+||+++.+|..|+.....++.+.+
T Consensus 488 ~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~~ 532 (543)
T KOG0361|consen 488 FEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPSA 532 (543)
T ss_pred HHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCCc
Confidence 999999999999999999999999999999999877655554433
No 40
>KOG0360|consensus
Probab=100.00 E-value=5.7e-70 Score=573.65 Aligned_cols=481 Identities=29% Similarity=0.481 Sum_probs=442.3
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL 391 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l 391 (841)
+++||-+..+..+|-+.. +.++.+..+..... ..-||..+++++.++.|+.++|||||+|++++++||+++.+|
T Consensus 37 ss~GPvGldKmlvdd~Gd-----vt~TndgAtiL~~l-~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~L 110 (545)
T KOG0360|consen 37 SSLGPVGLDKMLVDDIGD-----VTITNDGATILSLL-EVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADEL 110 (545)
T ss_pred hccCccchhhhccccccc-----eEEeccHHHHHHhh-hhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHh
Confidence 467777666776665442 35565554443333 567899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcC--CCCC
Q psy8873 392 LHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVN--PQRD 468 (841)
Q Consensus 392 l~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~--~~~~ 468 (841)
+..++||+.|++||+.|+..+++++.+ ++.|++...++.|.++++|++++|+.....++|+.++++|+..+.- .+..
T Consensus 111 v~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge 190 (545)
T KOG0360|consen 111 VKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGE 190 (545)
T ss_pred hcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCc
Confidence 999999999999999999999999975 6789998899999999999999999999999999999999997742 2344
Q ss_pred CcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHH
Q psy8873 469 TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEE 548 (841)
Q Consensus 469 ~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E 548 (841)
..+.+..+.|.|.+|.+..||.+++|+.++....+..||+.+.|+||++|++.|...+..+.-.+.+.++++++++.+.|
T Consensus 191 ~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e 270 (545)
T KOG0360|consen 191 PHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQRE 270 (545)
T ss_pred eeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHH
Confidence 56778899999999999999999999999999977799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCC------CCC
Q psy8873 549 RAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDH------FLP 622 (841)
Q Consensus 549 ~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~------l~~ 622 (841)
....++.+++|...|+|+|+++++| ||+++.||.++++++|||+.+++|++|+++||+++++++.+ +.+
T Consensus 271 ~~itkeRi~kIl~~ganvVLtt~gI-----ddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~ 345 (545)
T KOG0360|consen 271 QDITKERIKKILATGANVVLTTGGI-----DDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEP 345 (545)
T ss_pred hHhHHHHHHHHHhcCCcEEEEcCCc-----cHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccCh
Confidence 9999999999999999999999999 99999999999999999999999999999999999999874 567
Q ss_pred CCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy8873 623 EHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 702 (841)
Q Consensus 623 ~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~ 702 (841)
..+|+|+.|.+.+|+++.++++.+.+. ..++|+|||++++.+||++|++|||++++|..++++++||||||+|.+|+.
T Consensus 346 ~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~ 423 (545)
T KOG0360|consen 346 ASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSI 423 (545)
T ss_pred hhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHH
Confidence 789999999999999999999998765 489999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy8873 703 KLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 782 (841)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~ 782 (841)
+|+ +|+.+...++++++..|+.||.++|++|+.|++.|+.+++++++
T Consensus 424 yle---------------------------------~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lr 470 (545)
T KOG0360|consen 424 YLE---------------------------------NFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLR 470 (545)
T ss_pred HHH---------------------------------hhcccCccHHHHHHHHHHHHHhcchHHHhhhhcccccccccccc
Confidence 999 77888889999999999999999999999999999999999999
Q ss_pred HHHhcC--------CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhc
Q psy8873 783 NRHAQG--------ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVN 838 (841)
Q Consensus 783 ~~~~~~--------~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~ 838 (841)
..|+.. ..++|.|+.+|++.|.++.|+++|..+|...|+.|+|.+.+|||||++|.
T Consensus 471 a~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~ 534 (545)
T KOG0360|consen 471 AYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIK 534 (545)
T ss_pred CCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhh
Confidence 999742 13899999999999999999999999999999999999999999999985
No 41
>KOG0359|consensus
Probab=100.00 E-value=6.4e-66 Score=537.14 Aligned_cols=467 Identities=28% Similarity=0.434 Sum_probs=439.6
Q ss_pred ccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHH
Q psy8873 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403 (841)
Q Consensus 324 ~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~ 403 (841)
..|...| ++-.+.++|+=....+. ...+|+.-+|...+..|+...||||||+|+|+|+|+++|..++..|+||..|..
T Consensus 43 ~Kmlvsg-agdIklakdgnvLl~em-QiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~ 120 (520)
T KOG0359|consen 43 EKMLVSG-AGDIKLAKDGNVLLKEM-QIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITE 120 (520)
T ss_pred HHhccCC-ccceEEEecchhhHHHH-hhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhh
Confidence 3444444 56678888887777777 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccC
Q psy8873 404 AFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483 (841)
Q Consensus 404 g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~G 483 (841)
||+.|.+.++++|+..+.++ +++.|..+++|++++|....-.+.+++++++|+..+.+ .+..+|+.+++|.+...
T Consensus 121 gfe~a~~~~l~~L~k~~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~--~~~~idl~mveim~mq~ 195 (520)
T KOG0359|consen 121 GFEAAKNKALEFLEKVSREV---DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR--QEEPIDLFMVEIMEMQH 195 (520)
T ss_pred HHHHHHHHHHhhhhccccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc--CCCCcchhHHHhhhhcc
Confidence 99999999999999877776 57899999999999999999999999999999999873 35678999999999999
Q ss_pred CccccceeEEeEEEecCC-CCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8873 484 GTVEDTELVDGLVFTQKS-ANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKA 562 (841)
Q Consensus 484 g~~~dS~li~G~v~~~~~-~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~ 562 (841)
++..|+.+++|++++++. || .||+.++|+-|+++|.+|||.+++.++-+.+++++|.+.+...|++++.+.+.+|+++
T Consensus 196 ~s~~dT~~v~glvLdhg~rHp-dmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiiel 274 (520)
T KOG0359|consen 196 KSLHDTSLVQGLVLDHGARHP-DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIEL 274 (520)
T ss_pred CchhhhHHhhhhhccCCCCCc-ccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 88 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----cEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC
Q psy8873 563 GC----NVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN 638 (841)
Q Consensus 563 g~----~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~ 638 (841)
+. -+||.+++| ++..++.|.++||+++||.++..|||+..+||+..+.++++++|+.+|+|+.|++.++|+
T Consensus 275 k~~vc~fvvinqkGi-----dp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE 349 (520)
T KOG0359|consen 275 KRKVCEFVVINQKGI-----DPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE 349 (520)
T ss_pred hhhcceEEEecccCC-----CCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc
Confidence 74 378889999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhh
Q psy8873 639 SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYC 718 (841)
Q Consensus 639 ~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~ 718 (841)
++|+|+++|+++ +.|||+++||+.+.+.+++++++|++++++++++++.++||+|++|..++.+|+
T Consensus 350 EkfTFIE~~~~p-~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr------------- 415 (520)
T KOG0359|consen 350 EKFTFIEKCNNP-SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLR------------- 415 (520)
T ss_pred eeeEeeecCCCC-cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHH-------------
Confidence 999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccC
Q psy8873 719 FRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 798 (841)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~ 798 (841)
...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|..+ ..|+|+.+
T Consensus 416 --------------------~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~ 473 (520)
T KOG0359|consen 416 --------------------ESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFR 473 (520)
T ss_pred --------------------HhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hccccccc
Confidence 56667889999999999999999999999999999999999999988765 45999999
Q ss_pred CccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 799 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 799 g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
|+..++...||||.+.||++.|.+++-.|+.||-+|+|+++
T Consensus 474 g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 474 GEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred CCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999975
No 42
>KOG0363|consensus
Probab=100.00 E-value=9.2e-62 Score=495.17 Aligned_cols=346 Identities=33% Similarity=0.565 Sum_probs=327.4
Q ss_pred chhh---hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccC--CCceEEeccHHHHHhhhcccccccccc-----
Q psy8873 15 SAFK---DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQAS--NGEVTITNDGATILKQMNVIHPAAKMM----- 84 (841)
Q Consensus 15 ~~~k---~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~--~g~~~itnDg~ti~k~~~~~~p~ak~~----- 84 (841)
++|| ..++|+.||++.+-|+.+++|.||+|||||||+||+... .|.+.+||||+||+|++.+++|+||.+
T Consensus 5 ~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~ 84 (527)
T KOG0363|consen 5 QIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISK 84 (527)
T ss_pred hhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecccc
Confidence 3455 456799999999999999999999999999999999864 578999999999999999999988864
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 85 vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~S 164 (527)
T KOG0363|consen 85 VQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSS 164 (527)
T ss_pred ccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 165 KiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mDtDKv 244 (527)
T KOG0363|consen 165 KILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKV 244 (527)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCcccce
Confidence
Q ss_pred ---ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 85 ---DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 85 ---~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
.+.+++++..++..+...|++.|++.+++|.+.|+|+.|. |+-|.+...|+|...||+++.+..++-++|++
T Consensus 245 KvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN-----RQLiYnyPeqLf~dagi~aIEHADFdGiERLa 319 (527)
T KOG0363|consen 245 KVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN-----RQLIYNYPEQLFADAGIMAIEHADFDGIERLA 319 (527)
T ss_pred eeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee-----hhHhhcCHHHHHhhcCcceeecccchhHHHHh
Confidence 1366777888888889999999999999999999999864 45699999999999999999999999999999
Q ss_pred HHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 162 KTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 162 ~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
.+||+.+++++|++...+||+|+.+++..+|++++.+|+||+. |..|||+|||+|+++|||.||++|||||++...++|
T Consensus 320 lvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~e 398 (527)
T KOG0363|consen 320 LVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKE 398 (527)
T ss_pred hcccceeeeccCCcchhccccchhhHHHhcCccceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred CccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCC
Q psy8873 242 RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321 (841)
Q Consensus 242 ~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~ 321 (841)
.+++.|||++||.+++.+.+++...+|++..++.+|++||..+|.+||+|||||+.+++++||+.|.+|++++|+|.++|
T Consensus 399 srvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G 478 (527)
T KOG0363|consen 399 SRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNG 478 (527)
T ss_pred ceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 322 ~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
.+.||.+.||+|+++||+..+.+|.|++.++|++|.+|..+|...
T Consensus 479 ~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r 523 (527)
T KOG0363|consen 479 EIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRER 523 (527)
T ss_pred chhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccc
Confidence 999999999999999999999999999999999999998887654
No 43
>KOG0362|consensus
Probab=100.00 E-value=2.2e-59 Score=497.36 Aligned_cols=348 Identities=31% Similarity=0.507 Sum_probs=327.4
Q ss_pred CCCcccchhhhhcc----chHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc
Q psy8873 9 SKNSKSSAFKDKSK----ATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84 (841)
Q Consensus 9 ~~~~~~~~~k~~~~----~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~ 84 (841)
|..++.+++|++.+ -+++..+|+.+|+.+++.+||+|||.|||||++|+.|+.++|||++||+++++++||+||++
T Consensus 6 p~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakll 85 (537)
T KOG0362|consen 6 PKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLL 85 (537)
T ss_pred CCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHH
Confidence 45588889998755 37899999999999999999999999999999999999999999999999999999988874
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 86 v~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~ 165 (537)
T KOG0362|consen 86 VEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIM 165 (537)
T ss_pred HHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 166 skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~ 245 (537)
T KOG0362|consen 166 SKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQ 245 (537)
T ss_pred HhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCCcccccccceeEEEecCCCccc
Confidence
Q ss_pred ---ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 85 ---DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 85 ---~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
++++.+++++++..+.+.|+..+..+++.|...|++++++.+. ++++++|||++++|++++..++.||+|+|
T Consensus 246 TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~-----V~em~Lhflnky~ImVlqi~Sk~eLrrlc 320 (537)
T KOG0362|consen 246 TETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGK-----VDEMTLHFLNKYKIMVLQINSKFDLRRLC 320 (537)
T ss_pred ccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCc-----cchhhhhhhccccEEEEEeccHhhHHHHH
Confidence 2466788999999999999999999999999999999999887 89999999999999999999999999999
Q ss_pred HHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 162 KTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 162 ~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
+..||++.+++..+.++.+|+|+++...++|+++++.|......+.++||+|||+|...||+.||+++|++++++..+++
T Consensus 321 rtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d 400 (537)
T KOG0362|consen 321 RTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSD 400 (537)
T ss_pred HHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccC
Confidence 99999999999999999999999999999999999999765444578999999999999999999999999999999999
Q ss_pred CccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCC
Q psy8873 242 RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321 (841)
Q Consensus 242 ~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~ 321 (841)
++++||+|++|++|++.|.+|...++|.+|++|+.|++||+.+||+||||||+++.+++++|++.|. ++.+.|+|....
T Consensus 401 ~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e 479 (537)
T KOG0362|consen 401 SRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAE 479 (537)
T ss_pred CccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 455678887766
Q ss_pred -ccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhh
Q psy8873 322 -AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVEL 362 (841)
Q Consensus 322 -~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ 362 (841)
...|+.+.||||-+.+|.||++.|+++|+++|++|++|+..
T Consensus 480 ~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 480 GGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred ccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 59999999999999999999999999999999999999753
No 44
>KOG0357|consensus
Probab=100.00 E-value=1.8e-55 Score=446.35 Aligned_cols=335 Identities=36% Similarity=0.613 Sum_probs=298.9
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccH-HHHHhhhcccc-ccccccc-----------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDG-ATILKQMNVIH-PAAKMMD----------- 85 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg-~ti~k~~~~~~-p~ak~~~----------- 85 (841)
...+|.++..++|-+.+++|.+.+|||||+||+|++..+.|++++|||| .+|++-|.+.| |..-++.
T Consensus 22 ~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndgd~~IakLmv~LS~sqd~eIgdGtTgVvvLa~ 101 (400)
T KOG0357|consen 22 DRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDGVHQIAKLIVILSKSQDDEIGDGTTGVVVLAG 101 (400)
T ss_pred chhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeeccchHHHHHHHHhcccchhhhccCCcccEEecc
Confidence 4566899999999999999999999999999999999999999999987 47888777644 3222220
Q ss_pred --------------cceeecCHH---------HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh
Q psy8873 86 --------------HKVVVSDYS---------AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 142 (841)
Q Consensus 86 --------------~~~~i~~~~---------~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~ 142 (841)
+++.+.+-- .++.+.+ + -.+.+++++++++|+++++|+|+ ++|.|.|+|.
T Consensus 102 alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~-~-~ef~emi~~vK~~ga~l~icqwg-----fddeanhll~ 174 (400)
T KOG0357|consen 102 ALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISD-P-FEFEEMIQQIKETGANLAICQWG-----FDDEANHLLL 174 (400)
T ss_pred cchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcc-c-ccHHHHHHHHHhhCCcEEEEecc-----cCchhhhHHh
Confidence 122221110 1111110 0 11788999999999999999999 6999999999
Q ss_pred hhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecC--CceEEEEEcccCCCCeEEEEEcccchhh
Q psy8873 143 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQNPGRTLTVVVRGSNKLV 220 (841)
Q Consensus 143 ~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig--~~~~~~~~g~~~~~~~~tI~lrG~t~~~ 220 (841)
+++.|+++|+...+++.||.+||++++++++++++++||+|+.+++..+| ++++..++.|+++ +..||.+||++..+
T Consensus 175 ~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-kaVTifvRg~Nkmi 253 (400)
T KOG0357|consen 175 QNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-KAVTIFVRGGNKMI 253 (400)
T ss_pred hcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCC-ceEEEEEecCccee
Confidence 99999999999999999999999999999999999999999999999998 6899999999996 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Q psy8873 221 LDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTV 300 (841)
Q Consensus 221 l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~ 300 (841)
++|.||++|||||++|++++|.++|+|||++|+.||-.+.+.++.++|.|||++++|++||++||-.||||+|++|++.+
T Consensus 254 i~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~l 333 (400)
T KOG0357|consen 254 IEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETL 333 (400)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-CCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 301 TELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 301 ~~l~~~~~-~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
+++++++- .++.++|+|+.-....||.+.+++||+..|++.+..||..+.++|++|++++.
T Consensus 334 s~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~ 395 (400)
T KOG0357|consen 334 SDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKP 395 (400)
T ss_pred hHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecC
Confidence 99998874 46688999999989999999999999999999999999999999999998753
No 45
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.8e-54 Score=503.07 Aligned_cols=267 Identities=36% Similarity=0.622 Sum_probs=255.4
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.++++++++.+.++|++++.++++++.+.++++|+++++ +++.++++|.++||.+++++++.+|+++|++|||+
T Consensus 215 ~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~-----i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ 289 (485)
T PF00118_consen 215 IRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKS-----IDDEALQYLNKNGILVIRRVSKEDLERIARATGAS 289 (485)
T ss_dssp EEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSE-----BTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSB
T ss_pred cchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecc-----cccccchhhhhhhhhccccchHHHHHhhhcccCCc
Confidence 4566778899999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEE--cccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS--GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 245 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~--g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vv 245 (841)
+++++++++++.+|+|+.++++.+++++|++|+ ++.. +..+||+|||+|+.+++|.||+++||+++++++++++++|
T Consensus 290 ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 368 (485)
T PF00118_consen 290 IISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLS-SKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVV 368 (485)
T ss_dssp EBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESS-SSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEE
T ss_pred Eecccccccchhhhhhhhhhhcccccccccccccccccc-cCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCcee
Confidence 999999999999999999999999999999999 4665 4899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccc
Q psy8873 246 AGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 325 (841)
Q Consensus 246 pGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d 325 (841)
||||++|++|+.+|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++. ++|+|..+|++.|
T Consensus 369 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~-~~g~d~~~~~i~~ 447 (485)
T PF00118_consen 369 PGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN-NYGIDLDTGEIVD 447 (485)
T ss_dssp ETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT-TEEEETTTTEEEE
T ss_pred ecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc-ccCcCccCCceec
Confidence 999999999999999999999999999999999999999999999999999999999999886555 8999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|.+.|||||+.+|+++++.|+++|+++|++|++|+.
T Consensus 448 ~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~ 483 (485)
T PF00118_consen 448 MKEAGILDPLLVKISALKSAVEIASLILRIDEIIMA 483 (485)
T ss_dssp TTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999864
No 46
>KOG0360|consensus
Probab=100.00 E-value=2.7e-54 Score=455.12 Aligned_cols=342 Identities=34% Similarity=0.555 Sum_probs=321.8
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
+...|+..|..|..|+..++++||+||||-|+|||+++..|.+.+||||+||++.++++||++|.+
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 567789999999999999999999999999999999999999999999999999999999987653
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~ 172 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFT 172 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------------c
Q psy8873 85 -------------------------------------------------------------------------------D 85 (841)
Q Consensus 85 -------------------------------------------------------------------------------~ 85 (841)
.
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lG 252 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLG 252 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccccc
Confidence 0
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
-.+.++||++++.+...|....++.+++|.+.|+|+|+++++ |+|++++||.++|+++++++++++|++||++||
T Consensus 253 v~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~g-----Iddmc~K~~veagamAVrR~~k~dlk~iakatG 327 (545)
T KOG0360|consen 253 VQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGG-----IDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATG 327 (545)
T ss_pred ceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCC-----ccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhC
Confidence 245889999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CeEeeccc------ccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHH
Q psy8873 166 TRPIASLD------HFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLV 239 (841)
Q Consensus 166 a~~i~~l~------~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~ 239 (841)
+++++++. .+.+..+|+|+.|.+..|+++.++.+.|.+. ..|.|+|||++.+.+||+||++|||++++++.+
T Consensus 328 at~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtL 405 (545)
T KOG0360|consen 328 ATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTL 405 (545)
T ss_pred CeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHh
Confidence 99999987 4567889999999999999999999998774 389999999999999999999999999999999
Q ss_pred hcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC--------CC
Q psy8873 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ--------GE 311 (841)
Q Consensus 240 ~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~--------~~ 311 (841)
+++.+|||||++|.+++-+|++|+.+...+||.++.-|+.||.+||++|+-||+.|+.++++++|+.|+. .-
T Consensus 406 es~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~ 485 (545)
T KOG0360|consen 406 ESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLL 485 (545)
T ss_pred ccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999952 23
Q ss_pred cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcccc
Q psy8873 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD 367 (841)
Q Consensus 312 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd 367 (841)
.++|.|..+|.+.|.++.|+++|..+|...++.|++++..+|++|+++.-.+..+.
T Consensus 486 k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 486 KQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred hhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 57999999999999999999999999999999999999999999999987665553
No 47
>KOG0358|consensus
Probab=100.00 E-value=5.8e-54 Score=440.18 Aligned_cols=336 Identities=64% Similarity=0.994 Sum_probs=305.4
Q ss_pred chHHHHHHHHHHHHHHhHhhhcccccccc--cccccCCCceEEeccHHHHHhhhccccccccccccceeecCHHHHHHHH
Q psy8873 23 ATDIRNSNIGAAKAVADAIRTSLGPRGMD--KMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVL 100 (841)
Q Consensus 23 ~~~~~~~~i~~~~~la~~v~~tlGP~G~~--k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~ 100 (841)
.....+++|+.++.+++.|..|=--+|.- .=..+..|.-.|.+ +..-+-.+.+.-|...| ..++.++|+.+|++++
T Consensus 194 ~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriek-AkIglIQF~iS~PKtdm-en~iiv~DyaqMdril 271 (534)
T KOG0358|consen 194 ATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEK-AKIGLIQFQISPPKTDM-ENQIIVNDYAQMDRIL 271 (534)
T ss_pred ccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhh-ceeeEEEEEecCCCCCc-ccceEecCHHHHHHHH
Confidence 35567889999999999998885445542 11111223333332 33334456667788887 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCC
Q psy8873 101 KEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL 180 (841)
Q Consensus 101 ~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~l 180 (841)
+.|++|+.+++++|+++|+||+++|++|-|++++|+|+|||.+.+|++++++.+++++.+|+.+|+++++++++++++.|
T Consensus 272 keER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~L 351 (534)
T KOG0358|consen 272 KEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKL 351 (534)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeec-CCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhh
Q psy8873 181 SSADLVEEIPA-GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKL 259 (841)
Q Consensus 181 G~~~~~~~~~i-g~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L 259 (841)
|+++.+++..- |+.+++.+.|+.++|.+++|++||++..+++|.+|++|||||++|++++...++||||+.||+++..|
T Consensus 352 g~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L 431 (534)
T KOG0358|consen 352 GSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRL 431 (534)
T ss_pred CcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHH
Confidence 99999998844 55599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeec
Q psy8873 260 TKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVST 339 (841)
Q Consensus 260 ~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~ 339 (841)
..++++..|.++|++++|++|||.||.|||||||++|..++++||++|++|+.++|+|.++|.+.|+++..|+.|+.|..
T Consensus 432 ~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~ 511 (534)
T KOG0358|consen 432 SALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSI 511 (534)
T ss_pred HHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhhhHHh
Q psy8873 340 SAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 340 ~al~~a~~~a~~il~i~~ii~ 360 (841)
++++.|+|++.++|+||+++.
T Consensus 512 SaitlA~Etvr~ILKIDDIv~ 532 (534)
T KOG0358|consen 512 SAITLATETVRSILKIDDIVN 532 (534)
T ss_pred HHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999874
No 48
>KOG0364|consensus
Probab=100.00 E-value=1.5e-54 Score=452.79 Aligned_cols=339 Identities=32% Similarity=0.528 Sum_probs=321.2
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
....|..++..||++.+++||.+||+|||+.|.||+.++.|.+..||||..|++++++.||+|+-+
T Consensus 13 ~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdg 92 (527)
T KOG0364|consen 13 KRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 92 (527)
T ss_pred CcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCC
Confidence 445688899999999999999999999999999999999999999999999999999999976521
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 93 ttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~ 172 (527)
T KOG0364|consen 93 TTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICN 172 (527)
T ss_pred ceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhh
Confidence
Q ss_pred ----------------------------------------------------------------------------ccce
Q psy8873 85 ----------------------------------------------------------------------------DHKV 88 (841)
Q Consensus 85 ----------------------------------------------------------------------------~~~~ 88 (841)
.+.+
T Consensus 173 lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnv 252 (527)
T KOG0364|consen 173 LALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNV 252 (527)
T ss_pred HHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccce
Confidence 1244
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeE
Q psy8873 89 VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 168 (841)
Q Consensus 89 ~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~ 168 (841)
++...+++.++++.|++++..+.+.|...++++|+++++ ++|+|+|||.+.|++++++.++.|-.|+|+++||++
T Consensus 253 e~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG-----~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~i 327 (527)
T KOG0364|consen 253 EIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKG-----VSDLAQHYLLKANITAIRRLRKTDNNRIARACGARI 327 (527)
T ss_pred eeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccc-----hhHHHHHHHHhcCchhhhhhhccccchhhhhcCcee
Confidence 555556778889999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred eecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 169 IASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 169 i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
+++.+++.+.+.|+ |+.|+.+.+|++.|++|..|+.| +.|||++||+|..+|+|++|.+.||+.+.|+.+.+++++||
T Consensus 328 v~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p-kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPG 406 (527)
T KOG0364|consen 328 VNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP-KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPG 406 (527)
T ss_pred ccChhhCchhccCcccceeeeeccCchhhhhhhhcCCC-cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCC
Confidence 99999999999996 88999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~ 327 (841)
|||+||.+|..|.+.+...+|.+|+.+.+++.||+.+||+|++|+|.++...++.+++.|..|...+|+|+++|.++||.
T Consensus 407 GGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~ 486 (527)
T KOG0364|consen 407 GGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMV 486 (527)
T ss_pred ccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeee
Confidence 99999999999999889999999999999999999999999999999999999999999999989999999999999999
Q ss_pred ccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 328 ~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
+.++|+|..||.+..+.|.++++++|++|+++....
T Consensus 487 ~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 487 ELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKK 522 (527)
T ss_pred eccccchhhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence 999999999999999999999999999999886443
No 49
>KOG0357|consensus
Probab=100.00 E-value=2.3e-53 Score=430.95 Aligned_cols=321 Identities=39% Similarity=0.659 Sum_probs=304.8
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLI 432 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~ 432 (841)
++|.+++...+..|+.+.|||||.+++|++.+++++.+++.+|+||..|.+||..+...+.+.|++++-+++
T Consensus 72 ~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e-------- 143 (400)
T KOG0357|consen 72 HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE-------- 143 (400)
T ss_pred hHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc--------
Confidence 478888999999999999999999999999999999999999999999999999999999999988776653
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
+.+.++++++.|+++++|+|++ +|.+.|+|.+++..
T Consensus 144 ---------------------------------------f~emi~~vK~~ga~l~icqwgf-----ddeanhll~~n~lp 179 (400)
T KOG0357|consen 144 ---------------------------------------FEEMIQQIKETGANLAICQWGF-----DDEANHLLLQNNLP 179 (400)
T ss_pred ---------------------------------------HHHHHHHHHhhCCcEEEEeccc-----CchhhhHHhhcCCC
Confidence 3456888999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~ 670 (841)
+||||.-.++|.||.+||++++++|++++++.||+++.|++.++|. +++..+++|+++ +.+||.+||.+..+++|.+
T Consensus 180 avrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-kaVTifvRg~Nkmii~Eak 258 (400)
T KOG0357|consen 180 AVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-KAVTIFVRGGNKMIIEEAK 258 (400)
T ss_pred ceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCC-ceEEEEEecCcceeHHHHH
Confidence 9999999999999999999999999999999999999999999985 899999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|++|||||++|++++|.++|+|||++|+.||-.+. +.+..+++.+||
T Consensus 259 rslhdalCvirnlird~rivYgGGaaEiscslav~---------------------------------~ead~~~g~eqy 305 (400)
T KOG0357|consen 259 RSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVS---------------------------------QEADKIPGIEQY 305 (400)
T ss_pred HHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhh---------------------------------HhhccCCcHHHH
Confidence 99999999999999999999999999999999998 778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRS 829 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~ 829 (841)
++++||+||++||..|++|+|++|++.++++++.+-. .++.+|+|+--..-.||.+.+|+|++..|++.+..|++++.|
T Consensus 306 a~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrM 385 (400)
T KOG0357|consen 306 AFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRM 385 (400)
T ss_pred HHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754 567999999888889999999999999999999999999999
Q ss_pred HHchhhhhcC
Q psy8873 830 ILKIDDIVNT 839 (841)
Q Consensus 830 iL~iD~iI~~ 839 (841)
||+||+|+.+
T Consensus 386 iLKiddv~~~ 395 (400)
T KOG0357|consen 386 ILKIDDVRKP 395 (400)
T ss_pred hhhccceecC
Confidence 9999999864
No 50
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.7e-53 Score=488.89 Aligned_cols=286 Identities=67% Similarity=1.081 Sum_probs=272.0
Q ss_pred hccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 74 MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 74 ~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
+.++.|..++ ..++.+.++++++.++++|+++++++++++.+.|+|||+++++|++++++++++|||.++||.++++++
T Consensus 230 ~~Le~~~~~~-~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~ 308 (517)
T TIGR02342 230 FQISPPKTDM-ENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIE 308 (517)
T ss_pred cCCCCCcccc-cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCC
Confidence 3344444443 678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHH
Q psy8873 154 REDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALC 233 (841)
Q Consensus 154 ~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~ 233 (841)
+++|+|||++|||+++++++++++++||+|+.|+++++++++++++++|+.+++.|||+|||+|+.+++|.||+++||++
T Consensus 309 ~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~ 388 (517)
T TIGR02342 309 REEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALC 388 (517)
T ss_pred HHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766899999999999999999999999999
Q ss_pred HHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcc
Q psy8873 234 VVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 313 (841)
Q Consensus 234 ~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~ 313 (841)
+++++++++++|||||++||+++.+|++++++.++.+|+++++|++||+.|||+||+|||+|+.+++.+|+..|++++.+
T Consensus 389 ~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~ 468 (517)
T TIGR02342 389 VIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKY 468 (517)
T ss_pred HHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCc
Confidence 99999999889999999999999999999888999999999999999999999999999999999999999999877788
Q ss_pred eeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 314 ~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 469 ~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~ 515 (517)
T TIGR02342 469 AGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVF 515 (517)
T ss_pred cceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceee
Confidence 99999999999999999999999999999999999999999999875
No 51
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.6e-53 Score=488.19 Aligned_cols=286 Identities=71% Similarity=1.136 Sum_probs=271.0
Q ss_pred hccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 74 MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 74 ~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
++++.|..++ ..++.++++++++.++++|+++++++++++++.|+|||+++++|+++++++++++||.++||.++++++
T Consensus 229 ~~le~~~~~~-~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~ 307 (515)
T cd03338 229 FCLSPPKTDM-DNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIE 307 (515)
T ss_pred cccccccccc-CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCC
Confidence 3333333333 567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHH
Q psy8873 154 REDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALC 233 (841)
Q Consensus 154 ~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~ 233 (841)
+++|+|||++|||+++++++++++++||+|+.|+++++|+++|++|++|+.++++|||+|||+|+.+++|.||+++||++
T Consensus 308 ~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~ 387 (515)
T cd03338 308 REEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALC 387 (515)
T ss_pred HHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998645899999999999999999999999999
Q ss_pred HHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcc
Q psy8873 234 VVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 313 (841)
Q Consensus 234 ~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~ 313 (841)
++++++++|++|||||++||+++.+|++++...++++|+++++|++||+.||++||+|||+|+.+++.+|+..|++++.+
T Consensus 388 ~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~ 467 (515)
T cd03338 388 VIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKN 467 (515)
T ss_pred HHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999877778
Q ss_pred eeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 314 TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 314 ~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|+||++|+
T Consensus 468 ~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~ 514 (515)
T cd03338 468 AGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL 514 (515)
T ss_pred cceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999999999999999999999885
No 52
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.2e-51 Score=478.98 Aligned_cols=273 Identities=29% Similarity=0.505 Sum_probs=263.5
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
...+.+++++++..+.++|+++++++++.|++.|+++++++++ |++.+++||.++||++++++++++++|||++|
T Consensus 255 ~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~-----I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~t 329 (533)
T PTZ00212 255 GAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQL-----IYNYPEQLFAEAGIMAIEHADFDGMERLAAAL 329 (533)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCC-----ccHHHHHHHHHCCCEEEecCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|++..+|+++|++|+||..+ ++|||+|||+|+.+++|.||+++||++++|+++++|++
T Consensus 330 Ga~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~v 408 (533)
T PTZ00212 330 GAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKG-EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRV 408 (533)
T ss_pred CCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCC-CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++|++++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.++..++|+|+.+|.+.
T Consensus 409 VpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~ 488 (533)
T PTZ00212 409 VLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVG 488 (533)
T ss_pred eeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCccc
Confidence 99999999999999999998899999999999999999999999999999999999999999987777899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||+++++.|+++|+++|++|++|...+
T Consensus 489 d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 489 DMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred chhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 999999999999999999999999999999999998754
No 53
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-51 Score=476.51 Aligned_cols=273 Identities=28% Similarity=0.485 Sum_probs=263.6
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
..++.+++++++..+.+.|+++++++++.|++.|++++++++. |++.+++||.++||++++++++++|+|||++|
T Consensus 243 ~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~-----I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~t 317 (517)
T cd03336 243 GAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQL-----IYNYPEQLFADAGIMAIEHADFDGVERLALVT 317 (517)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCC-----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 4567788999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|++..+|+++|++|+||+.+ ++|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 318 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 318 GGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG-EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred CCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCC-ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|++++++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.
T Consensus 397 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~ 476 (517)
T cd03336 397 VLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVG 476 (517)
T ss_pred EeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999987778899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+..+
T Consensus 477 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 477 DMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred chhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999999999999999999999999999999997643
No 54
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-51 Score=478.66 Aligned_cols=273 Identities=30% Similarity=0.509 Sum_probs=262.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++++++++|++++++++++|.+.|++||+++++ ++++++|||.++||++++++++++|+|||++|
T Consensus 249 ~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~-----I~dla~~~l~~~~I~av~~v~~~~LerIa~~t 323 (525)
T TIGR02344 249 QTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKG-----VSDLAQHYLLKANISAIRRVRKTDNNRIARAC 323 (525)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----ccHHHHHHHhHCCceEEecCCHHHHHHHHHHh
Confidence 3567788899999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 165 NTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
||+++++++++++++||+ |+.|+++++++++|++|+||+.+ .+|||+|||+|+.+++|+||+++||++++++++++++
T Consensus 324 Ga~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~ 402 (525)
T TIGR02344 324 GATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPK 402 (525)
T ss_pred CCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC-CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999 99999999999999999999875 7999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC-CcceeeecCCCc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGA 322 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-~~~~G~d~~~~~ 322 (841)
+|||||++||+++.+|++++...++++|+++++|++||+.||++||+|||+|+.+++.+|+..|+++ ..++|+|+.+|.
T Consensus 403 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 482 (525)
T TIGR02344 403 LLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGK 482 (525)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCc
Confidence 9999999999999999999888999999999999999999999999999999999999999999876 568999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
+.||++.|||||+.||+++++.|+++|+++|++|++|...+
T Consensus 483 ~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 483 IVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred cccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999986543
No 55
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.2e-51 Score=476.79 Aligned_cols=270 Identities=40% Similarity=0.668 Sum_probs=261.2
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++.+++++|++++++++++|++.|+|||+++++ |++.|++||.++||.+++++++++|+|||++|
T Consensus 249 ~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~-----I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~t 323 (519)
T TIGR02339 249 DAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKG-----IDDLAQHYLAKAGILAVRRVKKSDIEKLARAT 323 (519)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCC-----ccHHHHHHHHHCCCEEEecCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|+++++|+++|++|+||+.+ .+|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 324 Ga~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~v 402 (519)
T TIGR02339 324 GAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP-KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKV 402 (519)
T ss_pred CCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999875 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|+..|..++.++|+|+.+|.+.
T Consensus 403 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~ 482 (519)
T TIGR02339 403 VAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIE 482 (519)
T ss_pred eeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999986677899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 483 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 483 DMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred chhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 999999999999999999999999999999999884
No 56
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-51 Score=478.00 Aligned_cols=281 Identities=37% Similarity=0.619 Sum_probs=264.2
Q ss_pred hhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccc
Q psy8873 73 QMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 152 (841)
Q Consensus 73 ~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~ 152 (841)
.++++.|..+ ...++.++++++++.+.++|+++++++++++.+.|+|+|+++++ |++.|++||.++||++++++
T Consensus 243 ~~~le~~~~~-~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~v 316 (526)
T cd03339 243 TCPFEPPKPK-TKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWG-----FDDEANHLLLQNGLPAVRWV 316 (526)
T ss_pred EecccCCccc-cceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCC-----CCHHHHHHHHHCCCEEEEeC
Confidence 3445555443 25677899999999999999999999999999999999999998 89999999999999999999
Q ss_pred cchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHH
Q psy8873 153 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHD 230 (841)
Q Consensus 153 ~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~d 230 (841)
++++|+|||++|||+++++++++++++||+|+.|+++++|. ++|++|+||+.+ ++|||+|||+|+.+++|+||+++|
T Consensus 317 ~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~er~l~D 395 (526)
T cd03339 317 GGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-KAVTIFIRGGNKMIIEEAKRSLHD 395 (526)
T ss_pred CHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC-CEEEEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985 688999999875 799999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC
Q psy8873 231 ALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG 310 (841)
Q Consensus 231 al~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~ 310 (841)
|++++|+++++|++|||||++||+++.+|+++++.+++++|+++++|++||+.|||+||+|||+|+.+++.+|+..|.++
T Consensus 396 Al~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~ 475 (526)
T cd03339 396 ALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE 475 (526)
T ss_pred HHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999643
Q ss_pred -CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 311 -ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 311 -~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 476 ~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 476 KNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 56799999999999999999999999999999999999999999999873
No 57
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.9e-51 Score=476.49 Aligned_cols=270 Identities=39% Similarity=0.678 Sum_probs=261.2
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
..++.+++++++++++++|+++++++++++.+.|+|||+++++ |+++|++||.++||.+++++++++|+|||++|
T Consensus 246 ~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~-----I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~t 320 (517)
T cd03343 246 DAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKG-----IDDLAQHYLAKAGILAVRRVKKSDMEKLARAT 320 (517)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----ccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|+++++|+++|++|+||+.+ ..|||+|||+|+.+++|+||+++||++++|+++++|++
T Consensus 321 Ga~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~v 399 (517)
T cd03343 321 GAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP-KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKV 399 (517)
T ss_pred CCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999875 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|++++++.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.++..++|+|+.+|.+.
T Consensus 400 vpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~ 479 (517)
T cd03343 400 VAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVV 479 (517)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCcc
Confidence 99999999999999999988899999999999999999999999999999999999999999976677899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 480 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 515 (517)
T cd03343 480 DMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515 (517)
T ss_pred chhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 999999999999999999999999999999999985
No 58
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.6e-51 Score=470.98 Aligned_cols=273 Identities=24% Similarity=0.408 Sum_probs=261.3
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---eEEEecchhhhhHHHHHHHHHhhhheeeeccccc
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG-------CN---VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIER 154 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~-------~~---lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~ 154 (841)
...+.+.+++++..+...|++++++++++|++.+ ++ +|+++++ |++.+++||.++||++++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~-----I~~~a~~~L~~~~I~~i~rv~~ 319 (531)
T TIGR02347 245 NSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKG-----IDPPSLDLLAKEGIMALRRAKR 319 (531)
T ss_pred CceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCC-----ccHHHHHHHHHCCceEEccCCH
Confidence 4568889999999999999999999999999976 25 9999987 8999999999999999999999
Q ss_pred hhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHH
Q psy8873 155 EDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV 234 (841)
Q Consensus 155 ~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~ 234 (841)
++|+|||++|||+++++++++++++||+|+.|+++++++++|++|+||+.+ +.|||+|||+|+.+++|+||+++||+++
T Consensus 320 ~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TI~lrG~t~~~l~E~er~l~DAl~v 398 (531)
T TIGR02347 320 RNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-KSCTILIKGPNDHTIKQIKDAVRDGLRA 398 (531)
T ss_pred HHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCC-CeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 7999999999999999999999999999
Q ss_pred HHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcce
Q psy8873 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 314 (841)
Q Consensus 235 ~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~ 314 (841)
+++++++|++|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..++.++
T Consensus 399 ~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~ 478 (531)
T TIGR02347 399 VKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVV 478 (531)
T ss_pred HHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCce
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999998777789
Q ss_pred eeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 315 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 315 G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|+||++|+..+
T Consensus 479 Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~ 527 (531)
T TIGR02347 479 GVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGR 527 (531)
T ss_pred eeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999987543
No 59
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-50 Score=467.52 Aligned_cols=273 Identities=28% Similarity=0.476 Sum_probs=262.8
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
.+.+.+++++++..+...|++++.++++.|++.|++++++++. |++.++|||.+++|++++++++++|+|||++|
T Consensus 244 ~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~-----I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~t 318 (519)
T TIGR02341 244 GSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQL-----IYNYPEQLFADAGVMAIEHADFEGIERLALVT 318 (519)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCc-----CCHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 4567778899999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|+.|+++.+|+++|++|+||+.+ ++|||+|||+|+.+++|.||+++||+++++++++++++
T Consensus 319 Ga~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~v 397 (519)
T TIGR02341 319 GGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG-EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRT 397 (519)
T ss_pred CCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCC-CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999974 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++||+++.+|++++++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|..+..++|+|+.+|.+.
T Consensus 398 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~ 477 (519)
T TIGR02341 398 VLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIA 477 (519)
T ss_pred EeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCccc
Confidence 99999999999999999988899999999999999999999999999999999999999999987777899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||+++++.|+++|+++|++|++|+..+
T Consensus 478 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 516 (519)
T TIGR02341 478 DMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAP 516 (519)
T ss_pred chhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 999999999999999999999999999999999997654
No 60
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.1e-51 Score=472.03 Aligned_cols=271 Identities=30% Similarity=0.521 Sum_probs=258.0
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
...+.++++++++.+.++|++++++++++|.+.|++||+++++ |++.|++||.++||++++++++++|+|||++|
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~-----I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGG-----IDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----CcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 4577889999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeeccccc------CCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 165 NTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 165 Ga~~i~~l~~l------~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
||+++++++++ ++++||+|++|+++++++++|++|+||+.+ ++|||+|||+|+.+++|.||+++||+++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~-~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~ 394 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR-SSASIILRGANDFMLDEMERSLHDALCVVKRT 394 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988655 445899999999999999999999999874 89999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC--------
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-------- 310 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-------- 310 (841)
+++|++|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..+
T Consensus 395 ~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~ 474 (527)
T cd03335 395 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKH 474 (527)
T ss_pred hhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccccc
Confidence 999999999999999999999999888999999999999999999999999999999999999999999765
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+.
T Consensus 475 ~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~ 525 (527)
T cd03335 475 LKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKL 525 (527)
T ss_pred CceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeec
Confidence 347899999999999999999999999999999999999999999998853
No 61
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-50 Score=469.73 Aligned_cols=280 Identities=34% Similarity=0.582 Sum_probs=263.5
Q ss_pred hccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 74 MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 74 ~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
++++.|..+ .+.++.++++++++.+.++|+++++++++++++.|++||+++++ |++.|++||.++||.++++++
T Consensus 248 ~~le~~~~~-~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~-----I~~~al~~L~~~~i~~v~~~~ 321 (532)
T TIGR02343 248 CPFEPPKPK-TKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWG-----FDDEANHLLLQNDLPAVRWVG 321 (532)
T ss_pred eeccccccc-cceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----ccHHHHHHHHHCCcEEEEcCC
Confidence 334444333 25678899999999999999999999999999999999999998 899999999999999999999
Q ss_pred chhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHH
Q psy8873 154 REDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDA 231 (841)
Q Consensus 154 ~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~da 231 (841)
+++|+|||++|||+++++++++++++||+|+.++++++|. ++|++|++|+.+ ..|||+|||+|+.+++|+||+++||
T Consensus 322 ~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-~~~TIllrG~t~~~l~E~er~l~DA 400 (532)
T TIGR02343 322 GHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-KAVTIFIRGGNKMIIEEAKRSIHDA 400 (532)
T ss_pred HHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC-CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 489999999875 7999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC-
Q psy8873 232 LCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG- 310 (841)
Q Consensus 232 l~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~- 310 (841)
+++++++++++++|||||++||+++++|++++.++++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..+
T Consensus 401 l~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~ 480 (532)
T TIGR02343 401 LCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEK 480 (532)
T ss_pred HHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999889999999999999999999999999999999999999999999744
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|.
T Consensus 481 ~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 481 NPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred CCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 56799999999999999999999999999999999999999999999984
No 62
>KOG0356|consensus
Probab=100.00 E-value=2.7e-49 Score=427.51 Aligned_cols=395 Identities=22% Similarity=0.298 Sum_probs=337.7
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhhhhccCcchh
Q psy8873 366 QDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVS 445 (841)
Q Consensus 366 qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~ 445 (841)
+++++||||||+++|+.++..++.+-+.+|.+|..|.+|+..+.+.+.+.|.++|.|++ ..+++.++|.++.+|+
T Consensus 94 tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vt--t~eeIaqVAtiSAngD--- 168 (550)
T KOG0356|consen 94 TNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVT--TPEEIAQVATISANGD--- 168 (550)
T ss_pred ccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhhhcCCc---
Confidence 45678999999999999999999999999999999999999999999999999999998 7889999999999998
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccc-cceeEEeEEEecCCCCCCCCceeecceEEEEEeecCC
Q psy8873 446 QQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVE-DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISP 524 (841)
Q Consensus 446 ~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~-dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~ 524 (841)
..+.+++.+|+.++++ .+ .|.++ .|.+.. +.++++||-|+++|.+ |+|+.+++-. .++|+.
T Consensus 169 ---~~ig~li~~a~~kvG~---~G-----VItv~--~gkt~~delev~eGmkfdrGyiS---Pyfi~~~k~~--~~e~e~ 230 (550)
T KOG0356|consen 169 ---KEIGNLISDAMKKVGR---KG-----VITVK--DGKTLEDELEVIEGMKFDRGYIS---PYFITSSKKQ--KVEFEN 230 (550)
T ss_pred ---HHHHHHHHHHHHHhCc---CC-----eEEee--cCCccccchhhhhcccccccccC---ccccccchhh--hhhhhh
Confidence 8899999999999975 33 46665 366664 5699999999999977 7887777655 445554
Q ss_pred Cccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH-hcCcEEEecCC----
Q psy8873 525 PKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE---- 598 (841)
Q Consensus 525 ~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~---- 598 (841)
+... +..+ |++. +.|.+.++.-.....+|++++++|++|+|..++++.|+ ..++++++.+.
T Consensus 231 ~~~ll~~kk--i~~v-----------~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdn 297 (550)
T KOG0356|consen 231 ALLLLSEKK--ISSV-----------QSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDN 297 (550)
T ss_pred hhhhhhhhh--hhHH-----------HHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcch
Confidence 4443 2222 3444 45778888888888999999999999999999999999 68999998764
Q ss_pred -hhHHHHHHHHcCCccccc------CCCCCCCCceeeeeEEEEEecCeeEEEEEc-------------------------
Q psy8873 599 -REDIEFVCKTLNTRPIAS------LDHFLPEHLSSADLVEEIPAGNSRFVKISG------------------------- 646 (841)
Q Consensus 599 -~~~L~~ia~~tGa~ii~~------l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------------------------- 646 (841)
+..+.+++.+||++++.. ++...++++|.|..+.++.- ....+.+
T Consensus 298 rk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd---~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 298 RKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKD---DTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred HHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecC---cceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 566999999999999873 56778899999999887551 1111111
Q ss_pred ---------cCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhh
Q psy8873 647 ---------IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717 (841)
Q Consensus 647 ---------~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~ 717 (841)
.+.++++++|.++|.++.+++|.+.+++||++++++++++| +|||||++.++++..|.
T Consensus 375 e~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~------------ 441 (550)
T KOG0356|consen 375 EKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLD------------ 441 (550)
T ss_pred hHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhh------------
Confidence 23567999999999999999999999999999999999999 99999999999999998
Q ss_pred hhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEcc
Q psy8873 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVR 797 (841)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~ 797 (841)
+....-+..++.+++++.+||..|..+++.|||.|+..++.+++. . .+|||..
T Consensus 442 ---------------------~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-----~-~~gyda~ 494 (550)
T KOG0356|consen 442 ---------------------ELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-----D-DYGYDAA 494 (550)
T ss_pred ---------------------hcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-----h-hhhhhhh
Confidence 222223446778899999999999999999999999999999983 2 7999999
Q ss_pred CCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcC
Q psy8873 798 KGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 798 ~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~ 839 (841)
+++++||.+.||+||+.|.+.+|..|..+|+++++++.+|..
T Consensus 495 ~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvte 536 (550)
T KOG0356|consen 495 KGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTE 536 (550)
T ss_pred cccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999998754
No 63
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-50 Score=465.42 Aligned_cols=277 Identities=31% Similarity=0.548 Sum_probs=264.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
.+.+.++++.++..+...|++++.++++.+++.|+|||+++++ +++++++||.++||.+++++++.+|+|||.+|
T Consensus 246 ~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~-----I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~t 320 (531)
T TIGR02346 246 KGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGS-----VGDMALHYCEKYNIMVLKIPSKFELRRLCKTV 320 (531)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCC-----cCHHHHHHHHHCCcEEEecCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|+++++|+++|.+|++|...+++|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 321 Ga~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~v 400 (531)
T TIGR02346 321 GATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRF 400 (531)
T ss_pred CCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999998754589999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCc--
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA-- 322 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~-- 322 (841)
|||||++||+++.+|+++++..++++|+++++|++||+.||++||+|||+|+.+++.+|+..|++++.++|+|+.+|.
T Consensus 401 VpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~ 480 (531)
T TIGR02346 401 LPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDG 480 (531)
T ss_pred EECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCcc
Confidence 999999999999999999888899999999999999999999999999999999999999999776778999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
+.||++.|||||+.||+++++.|+++|+++|++|++|...+...
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~ 524 (531)
T TIGR02346 481 VKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGG 524 (531)
T ss_pred ccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCC
Confidence 59999999999999999999999999999999999997654333
No 64
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-49 Score=462.53 Aligned_cols=269 Identities=32% Similarity=0.528 Sum_probs=260.1
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.++++++++.+.+.|++++.++++.+.+.|+++|+++++ +++.+++||.++||.+++++++++|+|||++|||
T Consensus 250 ~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~-----i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa 324 (522)
T cd03340 250 EVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLP-----IGDLATQYFADRDIFCAGRVPEEDLKRVAQATGG 324 (522)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----CcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCC
Confidence 55688999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIA 246 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvp 246 (841)
+++++++++++++||+|+.|+++++|+++|++|+||..+ ..|||+|||+|+.+++|.||+++||++++++++++|++||
T Consensus 325 ~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvp 403 (522)
T cd03340 325 SIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVA 403 (522)
T ss_pred EEeeccccCCccccccceEEEEEEECCEEEEEEECCCCC-ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999875 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCC-cceeeecCCCcccc
Q psy8873 247 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITN 325 (841)
Q Consensus 247 GgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~-~~~G~d~~~~~~~d 325 (841)
|||++||+++.+|+++++...+++|+++++|++||+.|||+||+|||+|+.+++.+|++.|..++ .++|+|+.+|.+.|
T Consensus 404 GGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d 483 (522)
T cd03340 404 GGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIAD 483 (522)
T ss_pred CcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccc
Confidence 99999999999999998888999999999999999999999999999999999999999998765 68999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|++.|||||+.||+++++.|+++|+++|++|++|+.
T Consensus 484 ~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~ 519 (522)
T cd03340 484 NFEAFVWEPSLVKINALTAATEAACLILSVDETIKN 519 (522)
T ss_pred hhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence 999999999999999999999999999999999854
No 65
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-49 Score=459.68 Aligned_cols=273 Identities=30% Similarity=0.488 Sum_probs=258.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
..++.++++.+++.+.++|++++.+.++.|.+.|++||+++++ +++.|++||.+++|.+++++++++|+|||++|
T Consensus 245 ~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~-----I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~t 319 (536)
T TIGR02340 245 GVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGG-----IDDMCLKYFVEAGAMGVRRCKKEDLKRIAKAT 319 (536)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC-----CcHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 5677889999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeeccccc------CCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 165 NTRPIASLDHF------LPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 165 Ga~~i~~l~~l------~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
||+++++++++ ++++||+|++|+++++++++|++|+||+.+ .+|||+|||+|+.+++|+||+++||+++++++
T Consensus 320 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 320 GGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR-KSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred CCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC-CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987544 456699999999999999999999999875 79999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC--------
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-------- 310 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-------- 310 (841)
+++|++|||||++||+++.+|++++...++++|+++++|++||+.||++||+|||+|+.+++.+|++.|..+
T Consensus 399 ~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~ 478 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKH 478 (536)
T ss_pred hcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCccccccc
Confidence 999999999999999999999999888899999999999999999999999999999999999999988754
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
..++|+|+.+|.+.||++.|||||+.||.++++.|+++|+++|++|++|+..+
T Consensus 479 ~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~ 531 (536)
T TIGR02340 479 LKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNP 531 (536)
T ss_pred CceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 34699999999999999999999999999999999999999999999997643
No 66
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.2e-49 Score=454.73 Aligned_cols=270 Identities=32% Similarity=0.529 Sum_probs=260.4
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
..+.++++++++.+.+.|++++.++++++.+.|+++++++++ +++.+++||.+++|.+++++++.+++++|++||
T Consensus 250 ~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-----i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tg 324 (522)
T TIGR02345 250 AEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-----IGDLATQYFADHNIFCAGRVSDEDLKRVVKACG 324 (522)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhC
Confidence 356778999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred CeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8873 166 TRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 245 (841)
Q Consensus 166 a~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vv 245 (841)
|+++++++++++++||+|+.|+++++++++|++|+||+.+ .+|||+|||+|+.+++|.||+++||+++++++++++++|
T Consensus 325 a~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vv 403 (522)
T TIGR02345 325 GSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIV 403 (522)
T ss_pred CeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999999875 799999999999999999999999999999999998899
Q ss_pred cCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccc
Q psy8873 246 AGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 325 (841)
Q Consensus 246 pGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d 325 (841)
||||++||+++.+|++++.+..+++|+++++|++||+.||++||+|||+|+.+++.+|++.|..++.++|+|+.+|.+.|
T Consensus 404 pGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d 483 (522)
T TIGR02345 404 AGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGD 483 (522)
T ss_pred eCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccc
Confidence 99999999999999999888899999999999999999999999999999999999999999877778999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
|++.|||||+.||+++++.|+++|+++|++|++|+.
T Consensus 484 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (522)
T TIGR02345 484 NFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN 519 (522)
T ss_pred hhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 999999999999999999999999999999999954
No 67
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-47 Score=438.78 Aligned_cols=337 Identities=28% Similarity=0.459 Sum_probs=296.7
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc--------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM-------------- 84 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~-------------- 84 (841)
+...|.+++..|+.||..++++|||||||+||||||+++.|+++|||||+||+++++++||.++|+
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 456789999999999999999999999999999999999999999999999999999999988774
Q ss_pred --------------------------------------------ccceeec---CHHHHHHH---------HHHHHHHHH
Q psy8873 85 --------------------------------------------DHKVVVS---DYSAMDRV---------LKEERAYIL 108 (841)
Q Consensus 85 --------------------------------------------~~~~~i~---~~~~l~~~---------~~~E~~~i~ 108 (841)
.....++ +.+.+..+ .....+.+.
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~ 165 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLT 165 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHH
Confidence 0112222 33333211 000011111
Q ss_pred HH----HHHH------------------------------------------------------------------HHhC
Q psy8873 109 NI----VKQI------------------------------------------------------------------KKAG 118 (841)
Q Consensus 109 ~~----l~~i------------------------------------------------------------------~~~~ 118 (841)
++ +..+ ....
T Consensus 166 ~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~ 245 (484)
T cd03342 166 EIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFF 245 (484)
T ss_pred HHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEE
Confidence 11 0000 0011
Q ss_pred CCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEE
Q psy8873 119 CNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK 198 (841)
Q Consensus 119 ~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~ 198 (841)
.+|||++++ |++.|++||.++||++++++++++|+|||++|||+++++++++++++||+|++++++++|+++|++
T Consensus 246 ~~lvi~~~~-----I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~ 320 (484)
T cd03342 246 YSVVINQKG-----IDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTF 320 (484)
T ss_pred EEEEEeCCC-----ccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEE
Confidence 237888887 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHH
Q psy8873 199 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFA 278 (841)
Q Consensus 199 ~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~ 278 (841)
|+||+.+ +.|||+|||+|+.+++|.||+++||++++++++++|++|||||++||+++.+|+++++..++++|+++++|+
T Consensus 321 i~~~~~~-~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a 399 (484)
T cd03342 321 IEGVKNP-KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFA 399 (484)
T ss_pred EECCCCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999876 799999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhH
Q psy8873 279 QALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358 (841)
Q Consensus 279 ~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~i 358 (841)
+||+.||++||+|||+|+.+++.+|+..|.+++.++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|+||++
T Consensus 400 ~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~i 479 (484)
T cd03342 400 DALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEI 479 (484)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999999999877778999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy8873 359 LVE 361 (841)
Q Consensus 359 i~~ 361 (841)
++.
T Consensus 480 i~~ 482 (484)
T cd03342 480 IRA 482 (484)
T ss_pred hhc
Confidence 853
No 68
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=427.46 Aligned_cols=274 Identities=34% Similarity=0.541 Sum_probs=259.6
Q ss_pred ccceeecCHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-eEEEecchhhhhHHHHHHHHHhhhheeeeccccchhH-HHHH
Q psy8873 85 DHKVVVSDYSAMDRVLKEER-AYILNIVKQIKKAGCN-VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI-EFVC 161 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~-~~i~~~l~~i~~~~~~-lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L-~~ia 161 (841)
..++.++++.+|..+.++|+ +.+..++..+.+.++| +++++++ ++|++++||.+.+|++++++.++++ ++++
T Consensus 236 ~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~g-----i~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~ 310 (524)
T COG0459 236 PLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPG-----IDDLAKAYLEDIAILTGRRVKKEDLGERLA 310 (524)
T ss_pred cceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCC-----CcHHHHHHHHhhcceecceecchhhHHHHH
Confidence 47889999999999999999 9999999999999999 9999998 8999999999999999999999999 7999
Q ss_pred HHhCCeEeecccccCCCCCcc--cceeeeeecCCceEEEEEcccC-CCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 162 KTLNTRPIASLDHFLPEHLSS--ADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 162 ~~tGa~~i~~l~~l~~~~lG~--~~~~~~~~ig~~~~~~~~g~~~-~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
+++||++++.++++++..+|. |+.+++..++++++++|.+|+. .+++|||+|||+|+.+++|.||++||||+++|++
T Consensus 311 ~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~a 390 (524)
T COG0459 311 KLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAA 390 (524)
T ss_pred HccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999985 2579999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccc-hhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeee
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSG-IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGIN 317 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~-~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d 317 (841)
+++|++|||||++|++++.+|++++.+.++ ++|+++++|++||+.|||+||+|||+||.+++.+||+.|. ..++|+|
T Consensus 391 ve~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d 468 (524)
T COG0459 391 VEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGID 468 (524)
T ss_pred HhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCcccee
Confidence 999999999999999999999998545555 9999999999999999999999999999999999999886 4469999
Q ss_pred cCCCcc-ccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 318 VRKGAI-TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 318 ~~~~~~-~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
+.++.+ .||++.|||||++||++++++|+++|.++|++|.+|.+.+..
T Consensus 469 ~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 469 AFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred ccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 999999 779999999999999999999999999999999999877654
No 69
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-46 Score=429.55 Aligned_cols=334 Identities=31% Similarity=0.549 Sum_probs=293.8
Q ss_pred cchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc----------------
Q psy8873 22 KATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD---------------- 85 (841)
Q Consensus 22 ~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~---------------- 85 (841)
.+++++..|+.+|+.+++++++||||+||||||+++.|+++|||||+||+++++++||.++|+.
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 3578999999999999999999999999999999999999999999999999999999888750
Q ss_pred ------------------------------------------ccee-ec---CHHHHHHHHH--------HHHHHHHHH-
Q psy8873 86 ------------------------------------------HKVV-VS---DYSAMDRVLK--------EERAYILNI- 110 (841)
Q Consensus 86 ------------------------------------------~~~~-i~---~~~~l~~~~~--------~E~~~i~~~- 110 (841)
.... ++ +.+.+..+.+ ...+++.++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~ 164 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLV 164 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 0111 21 1222211100 001111111
Q ss_pred ---HHH---------------------------------------------H-----------HHhCCCeEEEecchhhh
Q psy8873 111 ---VKQ---------------------------------------------I-----------KKAGCNVLLVQKSILRD 131 (841)
Q Consensus 111 ---l~~---------------------------------------------i-----------~~~~~~lvi~~~~i~~~ 131 (841)
+.. + .+.|++||+++++
T Consensus 165 ~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~g~~lvi~~~~---- 240 (472)
T cd03341 165 AEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVNVIVAGGS---- 240 (472)
T ss_pred HHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccCCCeEEEECCC----
Confidence 000 0 1127888999998
Q ss_pred hHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEE
Q psy8873 132 AISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 211 (841)
Q Consensus 132 ~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI 211 (841)
|++.+++||.++||++++++++.+|+|||++|||+++++++++++++||+|++|+++++|+++|++|++|...+++|||
T Consensus 241 -I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI 319 (472)
T cd03341 241 -VGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATI 319 (472)
T ss_pred -CCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999763479999
Q ss_pred EEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy8873 212 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 291 (841)
Q Consensus 212 ~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~N 291 (841)
+|||+|+.+++|.||+++||++++++++++|++|||||++||+++.+|++++...++++++++++|++||+.||++||+|
T Consensus 320 ~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~N 399 (472)
T cd03341 320 VLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAEN 399 (472)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cCCChHHHHHHHHhhccCCCcceeeecCCC--ccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 292 AGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 292 aG~d~~~~~~~l~~~~~~~~~~~G~d~~~~--~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||+|+.+++.+|+..|++++.++|+|+.+| .+.||++.|||||+.||+++++.|+++|+++|++|++|.
T Consensus 400 aG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 470 (472)
T cd03341 400 AGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIM 470 (472)
T ss_pred CCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceee
Confidence 999999999999999977677899999999 999999999999999999999999999999999999874
No 70
>KOG0359|consensus
Probab=100.00 E-value=1.8e-46 Score=391.76 Aligned_cols=333 Identities=26% Similarity=0.431 Sum_probs=307.5
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccccccc----------------
Q psy8873 21 SKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM---------------- 84 (841)
Q Consensus 21 ~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~---------------- 84 (841)
..-..|...|+.++..+.+.+++.|||+|..||+++++|++++|+||.+.+++|.++||.+-++
T Consensus 13 ~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGtt 92 (520)
T KOG0359|consen 13 AQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTT 92 (520)
T ss_pred HhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcc
Confidence 3345677789999999999999999999999999999999999999999999999999954332
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 93 S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~a 172 (520)
T KOG0359|consen 93 SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDS 172 (520)
T ss_pred eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhh
Confidence
Q ss_pred ---------------------------------------------------------------------ccceeecCHHH
Q psy8873 85 ---------------------------------------------------------------------DHKVVVSDYSA 95 (841)
Q Consensus 85 ---------------------------------------------------------------------~~~~~i~~~~~ 95 (841)
++.+..++.++
T Consensus 173 Vl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~e 252 (520)
T KOG0359|consen 173 VLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEE 252 (520)
T ss_pred heeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhH
Confidence 01223345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC----eEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeec
Q psy8873 96 MDRVLKEERAYILNIVKQIKKAGCN----VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIAS 171 (841)
Q Consensus 96 l~~~~~~E~~~i~~~l~~i~~~~~~----lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~ 171 (841)
-+.+...|++++.+.+++|++.+.. +||.+++ +++..++.|.+.||.+.++.++..|||+..+||+..+++
T Consensus 253 re~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkG-----idp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 253 REVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKG-----IDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccC-----CCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 7888999999999999999998865 6777777 799999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChH
Q psy8873 172 LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 251 (841)
Q Consensus 172 l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~ 251 (841)
+++++|+.||+|+.+++..+|+++|+|+++|++| +.|||+++||+.+.+.++|++++|++++++++++|+.++||+|++
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~ 406 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAF 406 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCCC-cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHH
Confidence 9999999999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccccc
Q psy8873 252 EIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENV 331 (841)
Q Consensus 252 e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi 331 (841)
|++++.+|+...++.+|+.++|+++|++||.++|++|++|+|+|+.+.+.+|...|..+ -.|+|..+|.-.+....||
T Consensus 407 ~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi 484 (520)
T KOG0359|consen 407 EVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGI 484 (520)
T ss_pred HHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccc
Confidence 99999999988888999999999999999999999999999999999999999988755 4599999999999999999
Q ss_pred ccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 332 VQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 332 ~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
||.+.|+++.|.+++-.|+.+|-+|.++..
T Consensus 485 ~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 485 YDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999853
No 71
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-45 Score=424.33 Aligned_cols=336 Identities=35% Similarity=0.559 Sum_probs=293.0
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc-------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD------------- 85 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~------------- 85 (841)
+...|.+++..|+.||..+++++||||||+||+|||+++.|+++|||||+||+++++++||+++|+.
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 89 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDG 89 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCC
Confidence 3566899999999999999999999999999999999999999999999999999999999998750
Q ss_pred -----------------------------------------------cceeecCHHHHHHHHH---------HHHHHHHH
Q psy8873 86 -----------------------------------------------HKVVVSDYSAMDRVLK---------EERAYILN 109 (841)
Q Consensus 86 -----------------------------------------------~~~~i~~~~~l~~~~~---------~E~~~i~~ 109 (841)
.++.+.+.+.+..+.. .+.+.+.+
T Consensus 90 Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~ 169 (480)
T cd03337 90 TTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCN 169 (480)
T ss_pred cchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 1122223333321100 11111111
Q ss_pred H----HHHHH---------------------------H----------------------hCCC----------eEEEec
Q psy8873 110 I----VKQIK---------------------------K----------------------AGCN----------VLLVQK 126 (841)
Q Consensus 110 ~----l~~i~---------------------------~----------------------~~~~----------lvi~~~ 126 (841)
+ +..+. + ..+. ||++++
T Consensus 170 lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~lvi~~k 249 (480)
T cd03337 170 LALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYLVITEK 249 (480)
T ss_pred HHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcceEEEeCC
Confidence 1 11110 0 0011 577888
Q ss_pred chhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCC
Q psy8873 127 SILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNP 205 (841)
Q Consensus 127 ~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~ 205 (841)
+ |++.|++||.++||++++++++++|+|||++|||+++++++++++++||+ |+.+++++++++++++|+||+.+
T Consensus 250 ~-----I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~ 324 (480)
T cd03337 250 G-----VSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP 324 (480)
T ss_pred C-----ccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC
Confidence 7 89999999999999999999999999999999999999999999999999 67778888899999999999875
Q ss_pred CCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHH
Q psy8873 206 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 285 (841)
Q Consensus 206 ~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip 285 (841)
++|||+|||+|+.+++|.||+++||+++++++++++++|||||++||+++.+|++++++.++++|+++++|++||+.||
T Consensus 325 -~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip 403 (480)
T cd03337 325 -KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIP 403 (480)
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHhhccCC-CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 286 LTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 286 ~~la~NaG~d~~~~~~~l~~~~~~~-~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
|+||+|||+|+.+++.+|++.|.++ ..++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|.
T Consensus 404 ~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 404 RTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999876 57899999999999999999999999999999999999999999999873
No 72
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.8e-45 Score=419.33 Aligned_cols=343 Identities=22% Similarity=0.336 Sum_probs=303.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
-|...||++++..|++|++.++++|||||||+||||||+++.|+++|||||+||+++++++|| +|+|+.
T Consensus 2 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd 81 (542)
T PRK12849 2 AKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTN 81 (542)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999999999999999999999999 888740
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 ~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv 161 (542)
T PRK12849 82 DVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELI 161 (542)
T ss_pred CccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHH
Confidence
Q ss_pred ----------c--------------------------------------ceeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 ----------H--------------------------------------KVVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 ----------~--------------------------------------~~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
. +..+++|.-+ +..+..+ +.+.++++++.
T Consensus 162 ~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~-~~~~~~l~~i~ 240 (542)
T PRK12849 162 AEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSL-QDLLPLLEKVA 240 (542)
T ss_pred HHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCH-HHHHHHHHHHH
Confidence 0 0011111000 1111222 56778999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhh------heeeeccccc-----hhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKI------KVLVVKDIER-----EDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~------~i~~v~~~~~-----~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.++||||++++ |++.|+++|.++ +|++++++++ ++|+|||++|||++++ +++++++++
T Consensus 241 ~~~~~lvI~~~~-----I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~ 315 (542)
T PRK12849 241 QSGKPLLIIAED-----VEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDD 315 (542)
T ss_pred HhCCCEEEECCC-----CcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHH
Confidence 999999999998 799999999988 8999998874 4499999999999999 699999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.|++. .+++++++||+++ ++.|||+|||+|+.+++|+|
T Consensus 316 LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~e 392 (542)
T PRK12849 316 LGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERK 392 (542)
T ss_pred CceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Confidence 9999999976 4889999988764 35899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|.+++ +.++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 393 r~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~ 470 (542)
T PRK12849 393 DRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLE 470 (542)
T ss_pred HHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 99999999999999998 99999999999999999998 89999999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGT 374 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGT 374 (841)
.| .++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+..+...+.+.|.|.
T Consensus 471 ~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~ 535 (542)
T PRK12849 471 LE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDPPGGMGG 535 (542)
T ss_pred hC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCCCCCCCC
Confidence 76 379999999999999999999999999999999999999999999999987766655555553
No 73
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-44 Score=418.06 Aligned_cols=335 Identities=21% Similarity=0.310 Sum_probs=298.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccc----cccccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI----HPAAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~----~p~ak~~~------- 85 (841)
.|++.||.++|..|++|++.++++|||||||+||||||+++.|+|+|||||+||+++++++ ||+|+|+.
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~ 82 (545)
T PRK12852 3 AKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTN 82 (545)
T ss_pred cchhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcC
Confidence 3788999999999999999999999999999999999999999999999999999999994 88888750
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 83 ~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li 162 (545)
T PRK12852 83 DLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMI 162 (545)
T ss_pred ceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHH
Confidence
Q ss_pred --------------------------------------cc----------eeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HK----------VVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~----------~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
.+ ..++++.-+ +..+ .+.+++.++++.+.
T Consensus 163 ~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i-~~~~~i~~~l~~i~ 241 (545)
T PRK12852 163 AQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL-SGLQAMLPVLEAVV 241 (545)
T ss_pred HHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc-CCHHHHHHHHHHHH
Confidence 00 011111000 0001 22368999999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhh------heeeecccc-----chhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKI------KVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~------~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.++||||++++ |++.|+++|..+ +|+++++++ +++|+|||++|||++++ +++++++++
T Consensus 242 ~~g~~lvI~~~~-----i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~ 316 (545)
T PRK12852 242 QSGKPLLIIAED-----VEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKM 316 (545)
T ss_pred HhCcCEEEECCC-----CcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHH
Confidence 999999999998 799999999875 799998766 88999999999999999 799999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.+++.+ ++++++.|+..+ +++|||+|||+|+.+++|+|
T Consensus 317 lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~e 393 (545)
T PRK12852 317 LGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKK 393 (545)
T ss_pred CCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 99999999885 788999887653 57899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||+|++++++++| +|||||++|++++.+|.+++.. ++++|+++++|++||+.|||+||+|||+|+.+++++|++
T Consensus 394 r~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~ 471 (545)
T PRK12852 394 DRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILE 471 (545)
T ss_pred HHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999998 9999999999999999999876 889999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
.|. .++|||+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+..+++
T Consensus 472 ~~~---~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 472 NKS---ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred hcC---CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 773 479999999999999999999999999999999999999999999999876654
No 74
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-44 Score=416.32 Aligned_cols=343 Identities=23% Similarity=0.358 Sum_probs=301.5
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
-|+..||+++|..|++|++.++++|+|||||+||||||+++.|+++|||||+||+|+++++|| +++|+.
T Consensus 2 ~~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd 81 (542)
T PRK00013 2 AKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTN 81 (542)
T ss_pred CchhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcC
Confidence 368899999999999999999999999999999999999999999999999999999999999 677640
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 ~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv 161 (542)
T PRK00013 82 DVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLI 161 (542)
T ss_pred cccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHH
Confidence
Q ss_pred ----------cceee--------------------------------------cCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 ----------HKVVV--------------------------------------SDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 ----------~~~~i--------------------------------------~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
..+.+ .++.-+ +..+. ..+.+.++++.+.
T Consensus 162 ~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~-~~~~l~~~l~~i~ 240 (542)
T PRK00013 162 AEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKIS-NIQDLLPVLEQVA 240 (542)
T ss_pred HHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccC-CHHHHHHHHHHHH
Confidence 00000 000000 00011 1255778999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhh------eeeecccc-----chhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIK------VLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~------i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.|+||||++++ |++.|+++|..++ |+++++++ +++|+|||++|||++++ +++++++++
T Consensus 241 ~~g~~lvi~~~~-----I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~ 315 (542)
T PRK00013 241 QSGKPLLIIAED-----VEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLED 315 (542)
T ss_pred HhCCCEEEECCC-----CcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHH
Confidence 999999999998 7999999999886 89999886 88999999999999999 799999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.+++. .+++++|++|..+ |+.+||+|||+|+.+++|+|
T Consensus 316 LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~e 392 (542)
T PRK00013 316 LGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKK 392 (542)
T ss_pred CCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 9999999987 4899999988764 12789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++|+++++| +|||||++||+++.+|.++ ++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 393 r~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~ 470 (542)
T PRK00013 393 DRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKN 470 (542)
T ss_pred HHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999998 9999999999999999998 788999999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcccc--ccCCCC
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD--IEAGDG 373 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd--~~~GDG 373 (841)
.| +.++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+.... .+.|.|
T Consensus 471 ~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~ 537 (542)
T PRK00013 471 GK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGG 537 (542)
T ss_pred hc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCC
Confidence 88 347999999999999999999999999999999999999999999999988665432 345554
No 75
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.2e-44 Score=412.47 Aligned_cols=334 Identities=20% Similarity=0.323 Sum_probs=298.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccc----cccc--------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPA----AKMM-------- 84 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~----ak~~-------- 84 (841)
.|+..|++++|..|++|++.++++|||||||+||||||+++.|+++|||||+||+++++++||. ++|+
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd 82 (544)
T PRK12850 3 AKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTN 82 (544)
T ss_pred cceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999999999999999999999999999999998 6653
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 83 ~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv 162 (544)
T PRK12850 83 DLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMI 162 (544)
T ss_pred chhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHH
Confidence
Q ss_pred ---------c----------------------------c----------ceeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 85 ---------D----------------------------H----------KVVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 85 ---------~----------------------------~----------~~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
. + +..++++.-+ +..+.. .+.+.++++.+.
T Consensus 163 ~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~-~~~i~~~l~~i~ 241 (544)
T PRK12850 163 AEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISN-LQDLLPILEAVV 241 (544)
T ss_pred HHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCC-HHHHHHHHHHHH
Confidence 0 0 0001111000 000111 356899999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe------eeecc-----ccchhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i------~~v~~-----~~~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.|+||||++++ |++.|+++|.+++| +++++ +++++|+|||++|||++++ +++++++++
T Consensus 242 ~~g~~lvI~~~~-----I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~ 316 (544)
T PRK12850 242 QSGRPLLIIAED-----VEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDM 316 (544)
T ss_pred HhCCCEEEECCC-----CChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHH
Confidence 999999999998 89999999999998 88776 7899999999999999999 789999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+++++.+ +++++|+||..+ ++.|||+|||+|+.+++|+|
T Consensus 317 LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~e 393 (544)
T PRK12850 317 LGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKK 393 (544)
T ss_pred cCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHH
Confidence 99999999874 789999988763 35899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|+++ ++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 394 r~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~ 471 (544)
T PRK12850 394 DRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAE 471 (544)
T ss_pred HHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999997 9999999999999999998 688999999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
.|. ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|+..+..
T Consensus 472 ~~~----~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 472 LPG----NFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred hCC----CcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 763 78999999999999999999999999999999999999999999999876543
No 76
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-43 Score=407.44 Aligned_cols=336 Identities=43% Similarity=0.690 Sum_probs=294.3
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccccccccc-------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMD------------- 85 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~------------- 85 (841)
+..++++++.+|++||..+++++++||||+||+|||+++.|+++|||||+||+++++++||+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDG 81 (464)
T cd00309 2 EREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDG 81 (464)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCc
Confidence 4567899999999999999999999999999999999999999999999999999999999988750
Q ss_pred -----------------------------------------------cceeecCHHHHHHHHH----------HHH---H
Q psy8873 86 -----------------------------------------------HKVVVSDYSAMDRVLK----------EER---A 105 (841)
Q Consensus 86 -----------------------------------------------~~~~i~~~~~l~~~~~----------~E~---~ 105 (841)
.++.+.+.+.+..+.. +.+ +
T Consensus 82 Ttt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 82 TTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 0111333333322211 111 1
Q ss_pred HHHHHHHHHHH--------------------------------------------hCCC----------eEEEecchhhh
Q psy8873 106 YILNIVKQIKK--------------------------------------------AGCN----------VLLVQKSILRD 131 (841)
Q Consensus 106 ~i~~~l~~i~~--------------------------------------------~~~~----------lvi~~~~i~~~ 131 (841)
.+.+.+..+.. .++. +|+++++
T Consensus 162 l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~lIi~~~~---- 237 (464)
T cd00309 162 LVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKG---- 237 (464)
T ss_pred HHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcceEEecCCC----
Confidence 11122222211 0112 3445554
Q ss_pred hHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEE
Q psy8873 132 AISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 211 (841)
Q Consensus 132 ~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI 211 (841)
|++.|+++|.++||.+++++++++|+|||++|||++++++++++++++|+|+.+++.++|++++++|.+++.+ .+|||
T Consensus 238 -I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-~~~TI 315 (464)
T cd00309 238 -IDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG-KVATI 315 (464)
T ss_pred -cCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCC-CEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999864 79999
Q ss_pred EEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy8873 212 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 291 (841)
Q Consensus 212 ~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~N 291 (841)
+|||+|+.+++|.||+++||++++|++++++++|||||++||+++.+|++++...++++|+++++|++||+.||++||+|
T Consensus 316 llrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~N 395 (464)
T cd00309 316 LLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAEN 395 (464)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988999999999999999999988899999999999999999999999999
Q ss_pred cCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 292 AGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 292 aG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||+|+.+++.+|+..|..+..++|+|..+|.+.||.+.|||||+.||+++++.|+++|+++|++|++|+
T Consensus 396 aG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 396 AGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999987777899999999999999999999999999999999999999999999874
No 77
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.6e-43 Score=407.92 Aligned_cols=328 Identities=24% Similarity=0.361 Sum_probs=292.8
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----ccccc---------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMM--------- 84 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~--------- 84 (841)
|+..||.+++..|++|++.++++|+|||||+||+|||+++.|+|+|||||+||+++++++|| +++|+
T Consensus 1 ~~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999 88764
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~ 160 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIA 160 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence
Q ss_pred --------ccce--------------------------------------eecCHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8873 85 --------DHKV--------------------------------------VVSDYSAM--DRVLKEERAYILNIVKQIKK 116 (841)
Q Consensus 85 --------~~~~--------------------------------------~i~~~~~l--~~~~~~E~~~i~~~l~~i~~ 116 (841)
...+ .++++.-+ +.-+... +.+.++++.+.+
T Consensus 161 ~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~-~~l~~~l~~i~~ 239 (520)
T cd03344 161 EAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSI-QELLPILELVAK 239 (520)
T ss_pred HHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCH-HHHHHHHHHHHh
Confidence 0000 00111000 0001111 457778999999
Q ss_pred hCCCeEEEecchhhhhHHHHHHHHHhhhhe------eeeccc-----cchhHHHHHHHhCCeEee-----cccccCCCCC
Q psy8873 117 AGCNVLLVQKSILRDAISDLAIHFLDKIKV------LVVKDI-----EREDIEFVCKTLNTRPIA-----SLDHFLPEHL 180 (841)
Q Consensus 117 ~~~~lvi~~~~i~~~~v~~lal~~l~~~~i------~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~~l~~~~l 180 (841)
.|+||+|++++ +++.|+++|.++++ ++++++ ++++|+|||++|||++++ +++++++++|
T Consensus 240 ~~~~lvi~~~~-----i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~L 314 (520)
T cd03344 240 AGRPLLIIAED-----VEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDL 314 (520)
T ss_pred hCCCEEEEcCC-----CCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHC
Confidence 99999999998 79999999999988 776655 889999999999999999 8899999999
Q ss_pred cccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHHH
Q psy8873 181 SSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAAR 226 (841)
Q Consensus 181 G~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k~ 226 (841)
|+|+.+++.+ ++++++++|+.+ ++.|||+|||+|+.+++|+||
T Consensus 315 G~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r 391 (520)
T cd03344 315 GRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKD 391 (520)
T ss_pred CcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHH
Confidence 9999999875 789999988654 369999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhh
Q psy8873 227 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 306 (841)
Q Consensus 227 ~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~ 306 (841)
+++||++++++++++| +|||||++||+++++|.+++. .++++|+++++|++||+.|||+||+|||+|+.+++++|++.
T Consensus 392 ~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~ 469 (520)
T cd03344 392 RVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLES 469 (520)
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 9999999999999998 999999999999999999987 99999999999999999999999999999999999999988
Q ss_pred ccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 307 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 307 ~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
|. ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|.
T Consensus 470 ~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 470 PD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred cC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 75 799999999999999999999999999999999999999999998875
No 78
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.8e-43 Score=407.91 Aligned_cols=338 Identities=22% Similarity=0.341 Sum_probs=295.4
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------ 85 (841)
+-++..+++++|.+|++|++.|+++|+|||||+||||||+++.|+|+|||||+||+|+++++|| +|+|+.
T Consensus 13 ~~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~q 92 (555)
T PTZ00114 13 KGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKT 92 (555)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhh
Confidence 4457788999999999999999999999999999999999999999999999999999999999 888740
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 93 d~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 172 (555)
T PTZ00114 93 NDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSL 172 (555)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHH
Confidence
Q ss_pred -----------------------c----------------c----------eeecCHHHH--HHHHHHHHHHHHHHHHHH
Q psy8873 86 -----------------------H----------------K----------VVVSDYSAM--DRVLKEERAYILNIVKQI 114 (841)
Q Consensus 86 -----------------------~----------------~----------~~i~~~~~l--~~~~~~E~~~i~~~l~~i 114 (841)
. + ..+++|.-+ +.-++ .-+.+.++++.+
T Consensus 173 i~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~-~~~~i~~~le~i 251 (555)
T PTZ00114 173 IADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS-SIQSILPILEHA 251 (555)
T ss_pred HHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-CHHHHHHHHHHH
Confidence 0 0 001111000 00011 124588899999
Q ss_pred HHhCCCeEEEecchhhhhHHHHHHHHHhhhh------eeeecc-----ccchhHHHHHHHhCCeEeecc------cccCC
Q psy8873 115 KKAGCNVLLVQKSILRDAISDLAIHFLDKIK------VLVVKD-----IEREDIEFVCKTLNTRPIASL------DHFLP 177 (841)
Q Consensus 115 ~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~------i~~v~~-----~~~~~L~~ia~~tGa~~i~~l------~~l~~ 177 (841)
.+.++||+|++++ |++.|+++|..++ |+++++ +++++|+|||++|||+++++. +++++
T Consensus 252 ~~~~~~llI~~~~-----i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~ 326 (555)
T PTZ00114 252 VKNKRPLLIIAED-----VEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDP 326 (555)
T ss_pred HHhCCCEEEECCC-----CcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCH
Confidence 9999999999998 7999999998875 888866 567999999999999999987 88888
Q ss_pred CCCcccceeeeeecCCceEEEEEcccC----------------------------------CCCeEEEEEcccchhhHHH
Q psy8873 178 EHLSSADLVEEIPAGNSRFVKISGIQN----------------------------------PGRTLTVVVRGSNKLVLDE 223 (841)
Q Consensus 178 ~~lG~~~~~~~~~ig~~~~~~~~g~~~----------------------------------~~~~~tI~lrG~t~~~l~e 223 (841)
++||+|++|++.+ +++++++|+.. .++.|||+|||+|+.+++|
T Consensus 327 ~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E 403 (555)
T PTZ00114 327 SMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNE 403 (555)
T ss_pred HHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHH
Confidence 9999999999886 66777777651 2479999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhc--cccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q psy8873 224 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD--TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVT 301 (841)
Q Consensus 224 ~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~--~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~ 301 (841)
+||+++||++++++++++| +|||||++|++++.+|.+++. +.++++|+++++|++||+.|||+||+|||+|+.+++.
T Consensus 404 ~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~ 482 (555)
T PTZ00114 404 KKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVE 482 (555)
T ss_pred HHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999998 999999999999999999875 6789999999999999999999999999999999999
Q ss_pred HHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 302 ELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 302 ~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
+|++ .++.++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+...
T Consensus 483 ~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~ 544 (555)
T PTZ00114 483 KILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEK 544 (555)
T ss_pred HHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCccc
Confidence 9986 3456799999999999999999999999999999999999999999999998866553
No 79
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-43 Score=407.87 Aligned_cols=334 Identities=23% Similarity=0.326 Sum_probs=296.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
.|...|+++++..|++|++.++++|||||||+||||||+++.|+++|||||+||+++++++|| +|+|+.
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd 82 (541)
T PRK12851 3 AKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTN 82 (541)
T ss_pred cceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhh
Confidence 467889999999999999999999999999999999999999999999999999999999999 777740
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 83 ~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv 162 (541)
T PRK12851 83 DVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLV 162 (541)
T ss_pred HhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHH
Confidence
Q ss_pred --------------------------------------cc----------eeecCHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HK----------VVVSDYSAM--DRVLKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~----------~~i~~~~~l--~~~~~~E~~~i~~~l~~i~ 115 (841)
.+ .++.++.-+ +.-+. ..+.+.++++.+.
T Consensus 163 ~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-~~~~i~~~l~~i~ 241 (541)
T PRK12851 163 AEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-NLQDLLPVLEAVV 241 (541)
T ss_pred HHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-cHHHHHHHHHHHH
Confidence 00 001111000 00011 1356889999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe------eeecc-----ccchhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV------LVVKD-----IEREDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i------~~v~~-----~~~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.++||||++++ |++.|+++|..+++ +++++ +++++|+|||++|||++++ +++++++++
T Consensus 242 ~~~~~lvi~~~~-----I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~ 316 (541)
T PRK12851 242 QSGKPLLIIAED-----VEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQ 316 (541)
T ss_pred HhCcCEEEECCC-----CChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHH
Confidence 999999999998 89999999999886 66664 8999999999999999999 799999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.|++.+ ++|+++.||+.+ |..+||+|||+|+.+++|+|
T Consensus 317 LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~e 393 (541)
T PRK12851 317 LGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKK 393 (541)
T ss_pred cCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 99999999885 889999988663 23889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|++++.. ++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 394 r~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~ 471 (541)
T PRK12851 394 DRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE 471 (541)
T ss_pred HHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999999998 9999999999999999999876 899999999999999999999999999999999999998
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
.|. ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+..
T Consensus 472 ~~~----~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 472 KPG----GYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKK 527 (541)
T ss_pred hCC----CeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCC
Confidence 763 79999999999999999999999999999999999999999999999876544
No 80
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=9.7e-43 Score=402.69 Aligned_cols=336 Identities=20% Similarity=0.323 Sum_probs=297.5
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccc----ccccccc---------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI----HPAAKMM--------- 84 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~----~p~ak~~--------- 84 (841)
|+..||.++|..|++|++.++++|||||||+||||||+++.|+|+|||||+||+|+++++ ||+++|+
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred ceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 678899999999999999999999999999999999999999999999999999999999 9998874
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~ 163 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLA 163 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHH
Confidence
Q ss_pred --------c----------------------------cceeecCHH----HH--------H-HHHHHHHHHHHHHHHHHH
Q psy8873 85 --------D----------------------------HKVVVSDYS----AM--------D-RVLKEERAYILNIVKQIK 115 (841)
Q Consensus 85 --------~----------------------------~~~~i~~~~----~l--------~-~~~~~E~~~i~~~l~~i~ 115 (841)
. +++.++++. ++ + ++.. -+.+.++++.+.
T Consensus 164 ~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~--~~~i~~~l~~i~ 241 (546)
T PRK14104 164 DAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSS--LNELLPLLEAVV 241 (546)
T ss_pred HHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcC--HHHHHHHHHHHH
Confidence 0 011111110 00 1 1111 156889999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhh------hheeeecccc-----chhHHHHHHHhCCeEeec-----ccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDK------IKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~------~~i~~v~~~~-----~~~L~~ia~~tGa~~i~~-----l~~l~~~~ 179 (841)
+.|+||||++++ +++.|+++|.. .+|+++++++ +++|+|||++|||+++++ ++++++++
T Consensus 242 ~~g~~lvI~~~~-----i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~ 316 (546)
T PRK14104 242 QTGKPLVIVAED-----VEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQM 316 (546)
T ss_pred HhCcCEEEECCC-----CcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHH
Confidence 999999999999 78889998874 6788887776 789999999999999998 99999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+++++ ++++++++.||..+ ++.|||+|||+|+.+++|+|
T Consensus 317 LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~ 393 (546)
T PRK14104 317 LGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERK 393 (546)
T ss_pred CCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 999999875 57899999998764 57999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|+++||++++++++++| +|||||++|++++.+|+++. ..++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 394 r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~ 471 (546)
T PRK14104 394 DRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILE 471 (546)
T ss_pred HHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHh
Confidence 99999999999999998 99999999999999999884 46899999999999999999999999999999999999987
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDI 368 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~ 368 (841)
.| ..++|+|+.+|.+.||++.|||||+.||++++++|+++|+++|++|.+|.+.++++..
T Consensus 472 ~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~ 531 (546)
T PRK14104 472 KE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGA 531 (546)
T ss_pred cC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 54 3479999999999999999999999999999999999999999999999887766544
No 81
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=6e-43 Score=404.56 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhh----hheeeeccccc-----hhHHHHHHHhCCeEee----
Q psy8873 104 RAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK----IKVLVVKDIER-----EDIEFVCKTLNTRPIA---- 170 (841)
Q Consensus 104 ~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~----~~i~~v~~~~~-----~~L~~ia~~tGa~~i~---- 170 (841)
+..+.++++.+.+.++|++|++++|++++ ++..++++ ++|++++++++ ++|+|||.+|||++++
T Consensus 230 ~~~i~~~l~~i~~~~~~lvi~~~~i~~~a---l~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~ 306 (529)
T CHL00093 230 QQDLLPILEQVTKTKRPLLIIAEDVEKEA---LATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAG 306 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCChHH---HHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEeccccc
Confidence 35788999999999999999999954433 34445566 59999999954 7799999999999999
Q ss_pred -cccccCCCCCcccceeeeeecCCceEEEEEc---------ccC------------------------CCCeEEEEEccc
Q psy8873 171 -SLDHFLPEHLSSADLVEEIPAGNSRFVKISG---------IQN------------------------PGRTLTVVVRGS 216 (841)
Q Consensus 171 -~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g---------~~~------------------------~~~~~tI~lrG~ 216 (841)
+++++++++||+|+.+++.+ ++++++++ |+. .|..+||+|||+
T Consensus 307 ~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~ 383 (529)
T CHL00093 307 LSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAA 383 (529)
T ss_pred CCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 79999999999999999874 78888873 322 125889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHcCCC
Q psy8873 217 NKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD-TVSGIDAYCFRAFAQALEVIPLTLAENAGLN 295 (841)
Q Consensus 217 t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~-~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d 295 (841)
|+.+++|+||+++||++++|+++++| +|||||++||+++.+|+++++ +.++++|+++++|++||+.|||+||+|||+|
T Consensus 384 t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d 462 (529)
T CHL00093 384 TETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKN 462 (529)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999998 999999999999999999987 7899999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 296 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
+.+++.+++.. +.++|||+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+
T Consensus 463 ~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 463 GSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999753 34799999999999999999999999999999999999999999999998754
No 82
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.3e-42 Score=401.19 Aligned_cols=329 Identities=21% Similarity=0.326 Sum_probs=292.4
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----ccccc---------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMM--------- 84 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~--------- 84 (841)
|+..||+++|.+|++|++.++++|||||||+||||||+++.|+++|||||+||+|+++++|| +++++
T Consensus 2 ~~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 56789999999999999999999999999999999999999999999999999999999999 78764
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence
Q ss_pred --------c--------------------------------------cceeecCHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8873 85 --------D--------------------------------------HKVVVSDYSAM--DRVLKEERAYILNIVKQIKK 116 (841)
Q Consensus 85 --------~--------------------------------------~~~~i~~~~~l--~~~~~~E~~~i~~~l~~i~~ 116 (841)
. ++..+++|..+ +..+.. .+.+.++++.+.+
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~-~~~i~~~l~~i~~ 240 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN-IKDLLPLLEKVAQ 240 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC-HHHHHHHHHHHHH
Confidence 0 00111111111 111122 2567899999999
Q ss_pred hCCCeEEEecchhhhhHHHHHHHHHhhh------heeeeccccc-----hhHHHHHHHhCCeEee-----cccccCCCCC
Q psy8873 117 AGCNVLLVQKSILRDAISDLAIHFLDKI------KVLVVKDIER-----EDIEFVCKTLNTRPIA-----SLDHFLPEHL 180 (841)
Q Consensus 117 ~~~~lvi~~~~i~~~~v~~lal~~l~~~------~i~~v~~~~~-----~~L~~ia~~tGa~~i~-----~l~~l~~~~l 180 (841)
.|+||||++++ +++.|+++|..+ +|++++++++ ++|+|||++|||++++ +++++++++|
T Consensus 241 ~g~~lvi~~~~-----i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~L 315 (524)
T TIGR02348 241 SGKPLLIIAED-----VEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDL 315 (524)
T ss_pred hCcCEEEECCC-----CChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHC
Confidence 99999999998 799999999876 8899988754 7899999999999999 8999999999
Q ss_pred cccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHHH
Q psy8873 181 SSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAAR 226 (841)
Q Consensus 181 G~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k~ 226 (841)
|+|+.+++.+ +++++++|+..+ |+.+||+|||+|+.+++|+||
T Consensus 316 G~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er 392 (524)
T TIGR02348 316 GKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKL 392 (524)
T ss_pred CCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence 9999999874 789999887553 347999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhh
Q psy8873 227 SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 306 (841)
Q Consensus 227 ~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~ 306 (841)
+++||++++|+++++| +|||||++||+++.+|.+ +.+.++++|+++++|++||+.|||+||+|||+|+.+++++|++.
T Consensus 393 ~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 470 (524)
T TIGR02348 393 RVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES 470 (524)
T ss_pred HHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999999999998 999999999999999998 77889999999999999999999999999999999999999865
Q ss_pred ccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 307 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 307 ~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
.+ ++|+|+.+|.+.||++.|||||+.||+++++.|+++|+++|++|++|++
T Consensus 471 --~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~ 521 (524)
T TIGR02348 471 --KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD 521 (524)
T ss_pred --CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 23 4899999999999999999999999999999999999999999999965
No 83
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=398.69 Aligned_cols=344 Identities=21% Similarity=0.336 Sum_probs=290.2
Q ss_pred hhhhhccch--HHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----ccccc-----
Q psy8873 16 AFKDKSKAT--DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMM----- 84 (841)
Q Consensus 16 ~~k~~~~~~--~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~----- 84 (841)
+-|++.||+ +||.++++|++.|+++|+|||||+||||||++++|+|+|||||+||+|+|+++|| +|+|+
T Consensus 55 ~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~ 134 (600)
T PLN03167 55 AAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAA 134 (600)
T ss_pred hcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHH
Confidence 457889999 7999999999999999999999999999999999999999999999999999999 57764
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 85 -------------------------------------------------------------------------------- 84 (841)
Q Consensus 85 -------------------------------------------------------------------------------- 84 (841)
T Consensus 135 ~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~ 214 (600)
T PLN03167 135 KTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGN 214 (600)
T ss_pred hhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHH
Confidence
Q ss_pred ---------------------------------------ccceeecCHHHH------------HHHHHHHHHHHHHHHHH
Q psy8873 85 ---------------------------------------DHKVVVSDYSAM------------DRVLKEERAYILNIVKQ 113 (841)
Q Consensus 85 ---------------------------------------~~~~~i~~~~~l------------~~~~~~E~~~i~~~l~~ 113 (841)
.++++++|++.+ +..+... +.+.++++.
T Consensus 215 liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~-~~l~~~le~ 293 (600)
T PLN03167 215 MIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNA-RDLIGILED 293 (600)
T ss_pred HHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCH-HHHHHHHHH
Confidence 001111111110 1111222 467778899
Q ss_pred HHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeecccc-----chhHHHHHHHhCCeEee-----cccccCCCCCcc
Q psy8873 114 IKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIA-----SLDHFLPEHLSS 182 (841)
Q Consensus 114 i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~~-----~~~L~~ia~~tGa~~i~-----~l~~l~~~~lG~ 182 (841)
+.+.++|+||++++|+++++..++++.+. ..+++++++++ +++|+|||.+|||++++ +++++++++||+
T Consensus 294 i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~ 373 (600)
T PLN03167 294 AIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGT 373 (600)
T ss_pred HHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999544444444433333 68899999986 77899999999999999 789999999999
Q ss_pred cceeeeee-----cCC--------ceEEEEEccc------------------CCCCeEEEEEcccchhhHHHHHHHHHHH
Q psy8873 183 ADLVEEIP-----AGN--------SRFVKISGIQ------------------NPGRTLTVVVRGSNKLVLDEAARSLHDA 231 (841)
Q Consensus 183 ~~~~~~~~-----ig~--------~~~~~~~g~~------------------~~~~~~tI~lrG~t~~~l~e~k~~l~da 231 (841)
|+++++++ +|+ +++++|+++. .++.+++|+|||+|+.+++|+||+++||
T Consensus 374 a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DA 453 (600)
T PLN03167 374 AAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDA 453 (600)
T ss_pred eeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHH
Confidence 99999886 665 4777776653 2233455559999999999999999999
Q ss_pred HHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC
Q psy8873 232 LCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY-CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG 310 (841)
Q Consensus 232 l~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~-~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~ 310 (841)
++++|+++++| +|||||++||+++.+|++++.+..+.+|+ ++++|++||+.|||+||+|||+|+.+++.+|++.+
T Consensus 454 l~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~--- 529 (600)
T PLN03167 454 LNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND--- 529 (600)
T ss_pred HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC---
Confidence 99999999999 99999999999999999998888787774 59999999999999999999999999999998543
Q ss_pred CcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 311 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
+.++|||+.+|.+.||++.|||||+.||+++++.|+++|+++|++|.+|+..+.
T Consensus 530 ~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~ 583 (600)
T PLN03167 530 NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKE 583 (600)
T ss_pred CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 457999999999999999999999999999999999999999999999987543
No 84
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=7.5e-38 Score=330.14 Aligned_cols=234 Identities=21% Similarity=0.309 Sum_probs=216.0
Q ss_pred chhhhhhHHHHHHHHHHhhhcCCC-CCCccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEe
Q psy8873 443 VVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520 (841)
Q Consensus 443 ~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~ 520 (841)
....|.++|++++++|+..+.+.. ..+.+|++ +|+|++++||+++||++++|++|++++....||+.++||||++++|
T Consensus 15 ~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~ 94 (261)
T cd03334 15 NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG 94 (261)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee
Confidence 356789999999999999996432 22468876 6999999999999999999999999995559999999999999999
Q ss_pred ecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChh
Q psy8873 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 600 (841)
Q Consensus 521 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~ 600 (841)
+|++++++ +++++++++++.|++++.+++++|++.|+++||++++| ++++++||.++||+++++++++
T Consensus 95 ~Le~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I-----~~~a~~~l~k~gI~~v~~v~~~ 162 (261)
T cd03334 95 PLEYQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSV-----SRIAQDLLLEAGITLVLNVKPS 162 (261)
T ss_pred eecccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCcc-----CHHHHHHHHHCCCEEEEecCHH
Confidence 99999986 35789999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcCCccccc-CCCCCCCCceeeeeEEEEEecC-----eeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHH
Q psy8873 601 DIEFVCKTLNTRPIAS-LDHFLPEHLSSADLVEEIPAGN-----SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLH 674 (841)
Q Consensus 601 ~L~~ia~~tGa~ii~~-l~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~ 674 (841)
+|+|||++|||+++++ .++++++++|+|++|++.++|+ ++|++|++|+.+ +.+||+|||+|+++++|+||+++
T Consensus 163 dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~-~~~TIlLRG~t~~~lde~eR~i~ 241 (261)
T cd03334 163 VLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE-LGCTILLRGGDLEELKKVKRVVE 241 (261)
T ss_pred HHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-ceeEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999 4589999999999999999996 699999999876 89999999999999999999999
Q ss_pred HHHHHHHHHhcCCeE
Q psy8873 675 DALCVVRCLVKQRAL 689 (841)
Q Consensus 675 dal~~~~~~l~~~~v 689 (841)
||+++++++..++.+
T Consensus 242 Dal~v~~~~~le~~~ 256 (261)
T cd03334 242 FMVFAAYHLKLETSF 256 (261)
T ss_pred HHHHHHHHHHHhHHH
Confidence 999999999888744
No 85
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.5e-33 Score=290.00 Aligned_cols=208 Identities=41% Similarity=0.618 Sum_probs=196.2
Q ss_pred HHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCc
Q psy8873 429 ENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPK 508 (841)
Q Consensus 429 ~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~ 508 (841)
+.|.++|+|+++||+ +.|.+.+++++++|+..++++. +.++.++|+|++.+||++.||++++|++|++++.+..||+
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~ 78 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--RMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPK 78 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--CCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCe
Confidence 478999999999999 9999999999999999997632 2577789999999999999999999999999994459999
Q ss_pred eeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 509 ~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
.++||+|++++++|++ +|+++++| ++.++++|.+
T Consensus 79 ~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I-----~~~al~~l~~ 112 (209)
T cd03333 79 RLENAKILLLDCPLEY-----------------------------------------VVIAEKGI-----DDLALHYLAK 112 (209)
T ss_pred EcCCCcEEEEeCCeeE-----------------------------------------EEEecCcc-----cHHHHHHHHH
Confidence 9999999999999985 99999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
+||++++++++++|+|||++|||++++++++++++++|+|++|++.++|++++++|++|+.+ +.|||+|||+|+.+++|
T Consensus 113 ~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-~~~tIllrG~t~~~l~e 191 (209)
T cd03333 113 AGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-KAATILLRGATEVELDE 191 (209)
T ss_pred CCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC-CEEEEEEECCCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy8873 669 AARSLHDALCVVRCLVKQ 686 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~ 686 (841)
++|+++||++++++++++
T Consensus 192 ~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 192 VKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999864
No 86
>KOG0356|consensus
Probab=99.98 E-value=2.7e-32 Score=295.88 Aligned_cols=351 Identities=20% Similarity=0.285 Sum_probs=300.8
Q ss_pred CCCCCCcccchhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cc
Q psy8873 6 SGDSKNSKSSAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AA 81 (841)
Q Consensus 6 ~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~a 81 (841)
++.+++...+..|++.||.++|..+++|++.||++|.+||||||||+++.++||+|+|||||+|++++++++++ +|
T Consensus 5 ~~~~~~~~~r~ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~ga 84 (550)
T KOG0356|consen 5 LGRSQTKCVRYAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGA 84 (550)
T ss_pred ccCCcccccccccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhcc
Confidence 45555666668899999999999999999999999999999999999999999999999999999999999887 34
Q ss_pred ccc-----------------------------------------------------------------------------
Q psy8873 82 KMM----------------------------------------------------------------------------- 84 (841)
Q Consensus 82 k~~----------------------------------------------------------------------------- 84 (841)
+++
T Consensus 85 klvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiS 164 (550)
T KOG0356|consen 85 KLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATIS 164 (550)
T ss_pred HHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Confidence 331
Q ss_pred ------------------------------------------------ccceeecCHHHHH------HHHHH-----HHH
Q psy8873 85 ------------------------------------------------DHKVVVSDYSAMD------RVLKE-----ERA 105 (841)
Q Consensus 85 ------------------------------------------------~~~~~i~~~~~l~------~~~~~-----E~~ 105 (841)
-+++++++++... .++-. --+
T Consensus 165 AngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~ 244 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQ 244 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHH
Confidence 1466666664321 01111 125
Q ss_pred HHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhhe-----eeeccccchhHHHHHHHhCCeEee------ccc
Q psy8873 106 YILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKV-----LVVKDIEREDIEFVCKTLNTRPIA------SLD 173 (841)
Q Consensus 106 ~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i-----~~v~~~~~~~L~~ia~~tGa~~i~------~l~ 173 (841)
.|.+.+|...+...|+++++++++++++..++++.|+ ..++ |.|++.++..+.|+|.+|||+++. +++
T Consensus 245 ~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le 324 (550)
T KOG0356|consen 245 SIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLE 324 (550)
T ss_pred HHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccc
Confidence 7888899999999999999999999999999999998 4444 555666666799999999999986 567
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc----------------------------------ccCCCCeEEEEEcccchh
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG----------------------------------IQNPGRTLTVVVRGSNKL 219 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g----------------------------------~~~~~~~~tI~lrG~t~~ 219 (841)
..++++||+|..+... .+..+.+.| .+..+++++|.++|.||.
T Consensus 325 ~~~~~dLG~~~evvvt---kd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~ 401 (550)
T KOG0356|consen 325 DAKLEDLGEVGEVVVT---KDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEV 401 (550)
T ss_pred cCchhhcCcceeEEEe---cCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchh
Confidence 7888999999877644 444445544 122478999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHH
Q psy8873 220 VLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299 (841)
Q Consensus 220 ~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~ 299 (841)
+++|+|++++||+|++++++++| +|||||+++++|+..|.++....+.+++.|++++.+||..|..+||+|||.|+..+
T Consensus 402 Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~v 480 (550)
T KOG0356|consen 402 EVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVV 480 (550)
T ss_pred hhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHH
Confidence 99999999999999999999999 99999999999999999986655667888999999999999999999999999999
Q ss_pred HHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 300 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 300 ~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
+.|++. ..||||+.+++|+||++.||+||++|.+.|++.|..+|+++++++.++.+.++..
T Consensus 481 v~Kv~~------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 481 VEKVLN------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHHh------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 999983 1799999999999999999999999999999999999999999999999988765
No 87
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.92 E-value=1.3e-24 Score=229.51 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=141.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEee
Q psy8873 91 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIA 170 (841)
Q Consensus 91 ~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~ 170 (841)
+++++++.++++|++++.+++++|++.|++||+++++ |+++|++||.++||++++++++.+|+|||++|||++++
T Consensus 103 ~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~-----I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~ 177 (261)
T cd03334 103 NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKS-----VSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIIS 177 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCc-----cCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEec
Confidence 5678899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cc-cccCCCCCcccceeeeeecCC-----ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 171 SL-DHFLPEHLSSADLVEEIPAGN-----SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 171 ~l-~~l~~~~lG~~~~~~~~~ig~-----~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
++ ++++++.||+|++|+++++|+ +++++|+||+.+ .+|||+|||+|+.+++|+||+++||+++++++..|+++
T Consensus 178 ~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~-~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~ 256 (261)
T cd03334 178 SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE-LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSF 256 (261)
T ss_pred ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 95 589999999999999999996 699999999875 79999999999999999999999999999999999854
Q ss_pred c
Q psy8873 245 I 245 (841)
Q Consensus 245 v 245 (841)
+
T Consensus 257 ~ 257 (261)
T cd03334 257 L 257 (261)
T ss_pred H
Confidence 4
No 88
>KOG0230|consensus
Probab=99.85 E-value=8e-21 Score=225.72 Aligned_cols=239 Identities=20% Similarity=0.288 Sum_probs=213.9
Q ss_pred hhhhhHHHHHHHHHHhhhcCCCC-CCcccc-cceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEEEeec
Q psy8873 445 SQQASLLAPIAVDAVLKVVNPQR-DTNVDL-KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCI 522 (841)
Q Consensus 445 ~~~~~~ls~lv~~A~~~v~~~~~-~~~~d~-~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~L 522 (841)
..|.+.+..|+++|...+.++.. .+..|+ ++|+|+++.||+..||+++.|+++.+....+.|..+.++|+|+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 67999999999999999987543 445665 6999999999999999999999999999656999999999999999999
Q ss_pred CCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHH
Q psy8873 523 SPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 602 (841)
Q Consensus 523 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L 602 (841)
+|++... ....++.+.++|.++++..+.+|...+++++++.++| +..|+++|...+|..+-+++..-|
T Consensus 411 eyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksV-----S~~aqe~L~~k~I~lvlnvK~s~l 478 (1598)
T KOG0230|consen 411 EYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSV-----SRIAQELLLDKGISLVLNVKRSLL 478 (1598)
T ss_pred hhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechH-----HHHHHHHhhccCeEEEEeccHHHH
Confidence 9998752 2344566677789999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHcCCcccccCCCCCCCCceeeeeEEEEEec-----CeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Q psy8873 603 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG-----NSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 603 ~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 677 (841)
+||+++|||.|+++++.++...+|+|+.+++..+- .+.+++|++|..+ .+|||+|||....++.++++.++-++
T Consensus 479 eRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~-lG~TiLLrG~~~~eLkkVK~Vvq~~v 557 (1598)
T KOG0230|consen 479 ERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP-LGCTILLRGDSLEELKKVKHVVQYLV 557 (1598)
T ss_pred HHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-CCceEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987754 5789999999998 99999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCCHH
Q psy8873 678 CVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 678 ~~~~~~l~~~~vvpGGG~~ 696 (841)
.++.++.-+..++.--|+.
T Consensus 558 ~aay~l~LE~SflaDe~as 576 (1598)
T KOG0230|consen 558 FAAYHLALETSFLADEGAS 576 (1598)
T ss_pred HHHHHHHHhhhhhhccCCc
Confidence 9998876665566555554
No 89
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.77 E-value=1.8e-18 Score=178.08 Aligned_cols=115 Identities=37% Similarity=0.699 Sum_probs=110.6
Q ss_pred eEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEE
Q psy8873 121 VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200 (841)
Q Consensus 121 lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~ 200 (841)
+|+++++ |++.|+++|.++||++++++++.+|+|||++|||++++++++++++.||+|+.|++.+++++++++|+
T Consensus 95 vii~~~~-----I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~ 169 (209)
T cd03333 95 VVIAEKG-----IDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIE 169 (209)
T ss_pred EEEecCc-----ccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEE
Confidence 8999887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhc
Q psy8873 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQ 241 (841)
Q Consensus 201 g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~ 241 (841)
+|+.+ .+|||+|||+|+.+++|.||+++||++++++++++
T Consensus 170 ~~~~~-~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 170 GCKGG-KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred cCCCC-CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 99864 79999999999999999999999999999999875
No 90
>KOG0230|consensus
Probab=99.56 E-value=8.8e-15 Score=174.98 Aligned_cols=175 Identities=19% Similarity=0.297 Sum_probs=156.1
Q ss_pred hhccccccccccccceeec----CHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheee
Q psy8873 73 QMNVIHPAAKMMDHKVVVS----DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 148 (841)
Q Consensus 73 ~~~~~~p~ak~~~~~~~i~----~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~ 148 (841)
.-+.++|...++...++.+ +...++.++.||.++++.++.+|...++++++++++ |++.|+++|...+|..
T Consensus 395 ~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeks-----VS~~aqe~L~~k~I~l 469 (1598)
T KOG0230|consen 395 ATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKS-----VSRIAQELLLDKGISL 469 (1598)
T ss_pred hhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEech-----HHHHHHHHhhccCeEE
Confidence 3445666666666555443 357788999999999999999999999999999998 8999999999999999
Q ss_pred eccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecC-----CceEEEEEcccCCCCeEEEEEcccchhhHHH
Q psy8873 149 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG-----NSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 223 (841)
Q Consensus 149 v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig-----~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e 223 (841)
+-++++..|+||+|+|||.+++++|.++...||+|..|++..+- .+++++|+||..+ .+|||+|||+...+|++
T Consensus 470 vlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~-lG~TiLLrG~~~~eLkk 548 (1598)
T KOG0230|consen 470 VLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP-LGCTILLRGDSLEELKK 548 (1598)
T ss_pred EEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC-CCceEEecCCCHHHHHH
Confidence 99999999999999999999999999999999999999877665 5678999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCChHHH
Q psy8873 224 AARSLHDALCVVRCLVKQRALIAGGGAPEI 253 (841)
Q Consensus 224 ~k~~l~dal~~~~~~~~~~~vvpGgGa~e~ 253 (841)
+|+.+..++.++++...|..++..-|+..-
T Consensus 549 VK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 549 VKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 999999999999999999888888887554
No 91
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=67.83 E-value=10 Score=33.32 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 108 LNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 108 ~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
.+..+.+..-.+.+++++.+.+......+...++.+++||.+...++.+| .+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eL---G~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEEL---GRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHH---HHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHH---HHHHCCC
Confidence 34556677778999999999988888887888889999999988866555 4555544
No 92
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=67.37 E-value=14 Score=31.97 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 107 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 107 i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
+++.++.+.+-.+.++++++|++...+ ......+.+.+||.+.-.++.+|.+.|
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv-~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLM-TRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHH-HHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 455667777778999999999887744 577778889999999998888777766
No 93
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=55.22 E-value=27 Score=32.47 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++.+.+-.+.+||++.|++...+-....+++.+++||.+..-+++ ++.+++|-
T Consensus 39 ~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~---eLG~a~Gk 91 (122)
T PRK04175 39 TKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKK---DLGKAAGL 91 (122)
T ss_pred HHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHhCC
Confidence 455666678999999997655445566677788899976666554 44555554
No 94
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=53.48 E-value=31 Score=29.66 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.++.|.+-++.+|+++.|.+.. +.....+++..++||.+...++ +.+..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPR-LTEKVEALANEKGVPVSKVDSM---KKLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCC
Confidence 34556666789999999997664 6677788888999999877655 4555555644
No 95
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=52.08 E-value=32 Score=31.72 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=36.5
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++.|.+-.+.+||++.|++...+-....+++..++||.+...++.+| .+++|-
T Consensus 35 ~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eL---G~a~Gk 87 (117)
T TIGR03677 35 TKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDL---GAAAGL 87 (117)
T ss_pred HHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHH---HHHhCC
Confidence 45555666899999999765444556677788889997776666444 445553
No 96
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=51.95 E-value=35 Score=31.41 Aligned_cols=53 Identities=8% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
+.++.|.+-.+.+|+++.|++..-+-.....++..++||.+.-.++.+|.+.+
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~ 86 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAV 86 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 34566666679999999998866666777778888999999998888777665
No 97
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=51.47 E-value=28 Score=30.53 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 553 LNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 553 ~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
.+..+.+.+..+.+||.+.+++++.+..+...++.+++|..+...++. .|.+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~---eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKE---ELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHH---HHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHH---HHHHHHCCC
Confidence 345566666678899999999888887777888999999999888664 456666654
No 98
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=46.60 E-value=47 Score=28.60 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
.++.|.+-++.+||++.|.+. .+-....+++..++||+...-++ +.|.+++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~-~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEE-HVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 445666678999999999664 44556677778899999655444 5556666654
No 99
>PRK07714 hypothetical protein; Provisional
Probab=46.26 E-value=50 Score=29.46 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=37.6
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
.+.+.+-++.+||++.|.+.+... ...+++..+++|++...++ +.+..++|-.
T Consensus 27 ~~al~~g~~~lViiA~D~s~~~~~-ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 27 LKEVRSGKAKLVLLSEDASVNTTK-KITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHhCCceEEEEeCCCCHHHHH-HHHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 455566778999999997776544 4466677889999877665 5555666744
No 100
>PRK06683 hypothetical protein; Provisional
Probab=46.24 E-value=45 Score=28.68 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeE
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 168 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~ 168 (841)
.++.|.+-++.+||++.|.+.. +-....+++..++||++...++ ..|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVESV---RKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCcc
Confidence 3456666789999999996544 4556677778899999877655 55556666543
No 101
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=42.03 E-value=25 Score=32.90 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=53.7
Q ss_pred ccccccccccccCCCceEEeccHHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy8873 45 LGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLV 124 (841)
Q Consensus 45 lGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~ 124 (841)
.|+.|.+..|. .+-|.+=|--.+-.++.-||. .+.+=...++.=+..-..+.-.+.++++.+.++|++|+
T Consensus 18 ~g~~~~~r~I~----~~~i~Rpgl~L~G~~~~~~~~------RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~~~~P~iIv 87 (127)
T PF02603_consen 18 AGEDGLDRRIT----SPDINRPGLELAGFFNYFHPN------RIQIIGNTESAYLNSLDEEERKERLEKLFSYNPPCIIV 87 (127)
T ss_dssp E-GGGTT-EE-----ECCEEE-HHHHTTS-TTTTTC------SEEEE-HHHHHHHCCS-HHHHCCHHHHHCTTT-S-EEE
T ss_pred eCCCCccCeee----ccccCCccHhhcCccccCCCC------eEEEEcHHHHHHHHHCCHHHHHHHHHHHhCCCCCEEEE
Confidence 46777776644 445666677777777777764 11121222332222222345567789999999999999
Q ss_pred ecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 125 QKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 125 ~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
+++. .+.+...+.+.++++|+++-..
T Consensus 88 t~~~---~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 88 TRGL---EPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp ETTT------HHHHHHHHHCT--EEEESS
T ss_pred ECcC---CCCHHHHHHHHHhCCcEEEcCC
Confidence 9985 5678888889999999987553
No 102
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=39.68 E-value=80 Score=27.31 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHH
Q psy8873 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCK 607 (841)
Q Consensus 552 i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~ 607 (841)
+.+-++.+.+-.+.+|++++++++..+ ......|.+.+|-.+--.++.+|-+.|-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv-~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLM-TRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHH-HHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 344566666677889999999966644 3555778899999999999987766553
No 103
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.39 E-value=76 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccch
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 155 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~ 155 (841)
+.+.+.+.|+++||+.+ +..-|.++|..+||-++.-.+..
T Consensus 57 ~a~~l~~~gvdvvi~~~------iG~~a~~~l~~~GIkv~~~~~~~ 96 (121)
T COG1433 57 IAELLVDEGVDVVIASN------IGPNAYNALKAAGIKVYVAPGGT 96 (121)
T ss_pred HHHHHHHcCCCEEEECc------cCHHHHHHHHHcCcEEEecCCCC
Confidence 56778899999999988 79999999999999998887733
No 104
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=37.37 E-value=79 Score=28.21 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccc-cchhHHHHHHHhCC
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI-EREDIEFVCKTLNT 166 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~-~~~~L~~ia~~tGa 166 (841)
.++.+.+.++.+||++.|.+. .......+++..++||++... ++ +.+.+++|-
T Consensus 24 v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~~~tk---~eLG~a~Gk 77 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEYEGSS---VELGTLCGK 77 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCCH---HHHHHHhCC
Confidence 456666778999999999644 556777888889999987763 55 455566674
No 105
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=36.59 E-value=1.5e+02 Score=31.50 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHhhhcccccccccc------ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHH
Q psy8873 67 GATILKQMNVIHPAAKMM------DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHF 140 (841)
Q Consensus 67 g~ti~k~~~~~~p~ak~~------~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~ 140 (841)
|-|++|++--.=|....+ ..++=-.+.+++. ++..++++.+.+.++++++++-. +.+..|++.
T Consensus 17 GLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~-------~~~~~i~~~l~~~~ik~lVIACN----TASa~al~~ 85 (269)
T COG0796 17 GLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIR-------ERTLEIVDFLLERGIKALVIACN----TASAVALED 85 (269)
T ss_pred cHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHH-------HHHHHHHHHHHHcCCCEEEEecc----hHHHHHHHH
Confidence 889999998888866553 1222223333322 57788999999999999999987 689999999
Q ss_pred Hh-hhheeeeccccchhHHHHHHHh
Q psy8873 141 LD-KIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 141 l~-~~~i~~v~~~~~~~L~~ia~~t 164 (841)
|+ +..+|+++-+ . -++.-+++|
T Consensus 86 LR~~~~iPVvGvi-P-aik~A~~~t 108 (269)
T COG0796 86 LREKFDIPVVGVI-P-AIKPAVALT 108 (269)
T ss_pred HHHhCCCCEEEec-c-chHHHHHhc
Confidence 99 6889999999 3 344444444
No 106
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=35.41 E-value=66 Score=27.74 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=32.1
Q ss_pred HHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHH
Q psy8873 112 KQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEF 159 (841)
Q Consensus 112 ~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ 159 (841)
+.+.+.++++||+.. ++.-+.+.|.++||.++.. ...+++.
T Consensus 47 ~~l~~~~v~~li~~~------iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 47 KFLAEEGVDVLICGG------IGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp HHHHHTTESEEEESC------SCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred HHHHHcCCCEEEEeC------CCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 344557999999887 8999999999999999987 4444443
No 107
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=34.55 E-value=88 Score=28.86 Aligned_cols=53 Identities=8% Similarity=0.171 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHH
Q psy8873 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 606 (841)
Q Consensus 554 ~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia 606 (841)
+..+.|.+-.+.+|+.+.+++|..+-.....+|.+++|-.+.-.++.+|-+.+
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~ 86 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAV 86 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 34455555568899999999766666677788889999999999997765543
No 108
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=32.23 E-value=89 Score=28.43 Aligned_cols=53 Identities=6% Similarity=-0.041 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecc-ccchhHHHHHHHhCC
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD-IEREDIEFVCKTLNT 166 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~-~~~~~L~~ia~~tGa 166 (841)
.++.+.+-++.+||++.|.+... -....+++..++||++.. -.+ +.+.+++|-
T Consensus 33 vlkalk~gkaklViiA~D~~~~~-kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk 86 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIR-RSEIEYYAMLSKTGVHHYAGNN---NDLGTACGR 86 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHH-HHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCC
Confidence 34556667799999999954433 555677788899999764 444 555666674
No 109
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.76 E-value=1.1e+02 Score=26.17 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 554 ~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
+.++.|.+-.+.+||++.+.++ .+-....+++..++|-.+...++. .|.+++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~s~~---eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVDSMK---KLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEECCHH---HHHHHHCCC
Confidence 3455666677899999999944 244445577888999998888774 456666643
No 110
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.06 E-value=1.9e+02 Score=26.97 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=39.4
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
..+.|++.|+++|++ ..+ .+-+.+.|+..||-++.-.+..-=+-|-....+
T Consensus 57 ~a~~l~~~gvdvvi~-~~i-----G~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNI-----GPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEE-Ccc-----CHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 577788999999998 567 799999999999999988874444444444444
No 111
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=30.88 E-value=1.2e+02 Score=28.06 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=34.1
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
.++.|.+-.+.+||.+.++++.-.-....+++.+++|..+...++.+ |.+++|-
T Consensus 34 v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e---LG~a~Gk 87 (117)
T TIGR03677 34 VTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED---LGAAAGL 87 (117)
T ss_pred HHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 34555555678999999994322222335667788888777777754 4555553
No 112
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=30.25 E-value=1.1e+02 Score=27.61 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
.+.+.+-++.+||++.|.+.+. .....+++..+++|++..-.+ +.+..++|-.
T Consensus 26 ~~aik~gk~~lVI~A~D~s~~~-kkki~~~~~~~~vp~~~~~t~---~eLg~a~Gk~ 78 (104)
T PRK05583 26 EEAIKKKKVYLIIISNDISENS-KNKFKNYCNKYNIPYIEGYSK---EELGNAIGRD 78 (104)
T ss_pred HHHHHcCCceEEEEeCCCCHhH-HHHHHHHHHHcCCCEEEecCH---HHHHHHhCCC
Confidence 4555666789999999965554 344455566678888777555 5566667754
No 113
>PRK07283 hypothetical protein; Provisional
Probab=29.91 E-value=1.2e+02 Score=26.94 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.+.+-++.+||++.|.+.+.... ..+.+..++||++....+ +.+..++|-
T Consensus 27 ~~aik~gk~~lVi~A~Das~~~~kk-~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 27 VKAIQSGQAKLVFLANDAGPNLTKK-VTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHcCCccEEEEeCCCCHHHHHH-HHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 3555566789999999965544333 334556679999766555 456666673
No 114
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=29.75 E-value=1.4e+02 Score=24.91 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 153 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~ 153 (841)
+.+...|+++.+.-++++|+.++ .....+.+|.++..++|++.+....
T Consensus 18 ~~i~~~Ld~~~~~~~~~~lvhGg-a~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 18 ELIWAALDKVHARHPDMVLVHGG-APKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred HHHHHHHHHHHHhCCCEEEEECC-CCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 45677788888888999999987 3356899999999999998876554
No 115
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=29.45 E-value=70 Score=28.14 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHH
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 160 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~i 160 (841)
..+.+.+.++++|++.. ++.-+.+.|...||.++.... ..++++
T Consensus 55 ~~~~l~~~~v~~vi~~~------iG~~~~~~l~~~gI~v~~~~~-~~i~~v 98 (103)
T cd00851 55 AAEFLADEGVDVVIVGG------IGPRALNKLRNAGIKVYKGAE-GTVEEA 98 (103)
T ss_pred HHHHHHHcCCCEEEeCC------CCcCHHHHHHHCCCEEEEcCC-CCHHHH
Confidence 44445568999999976 799999999999999987765 444443
No 116
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=29.40 E-value=1.2e+02 Score=28.12 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
.++.+.+-.+.+||.+.++++.-+-.....++.+++|-.+...+++ +|..++|-
T Consensus 38 v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~---eLG~a~Gk 91 (122)
T PRK04175 38 TTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKK---DLGKAAGL 91 (122)
T ss_pred HHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHhCC
Confidence 4555555568899999999332222233456778888877777774 45555554
No 117
>PRK07714 hypothetical protein; Provisional
Probab=28.23 E-value=1.6e+02 Score=26.27 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
..+.+.+-.+.+||.+.+.+++.-. -..+++..++|.++...+++ .|..++|-.
T Consensus 26 v~~al~~g~~~lViiA~D~s~~~~~-ki~~~~~~~~vp~~~~~sk~---eLG~a~Gk~ 79 (100)
T PRK07714 26 VLKEVRSGKAKLVLLSEDASVNTTK-KITDKCTYYNVPMRKVENRQ---QLGHAIGKD 79 (100)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHH-HHHHHHHhcCCCEEEeCCHH---HHHHHhCCC
Confidence 4555666678999999999444222 23455677899988877774 456667744
No 118
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=27.24 E-value=2e+02 Score=24.63 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCC
Q psy8873 556 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 598 (841)
Q Consensus 556 v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~ 598 (841)
.+.+...++++||+ +.| .+-+.+.|.+.||-++....
T Consensus 46 ~~~l~~~~v~~li~-~~i-----G~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 46 AKFLAEEGVDVLIC-GGI-----GEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHTTESEEEE-SCS-----CHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHcCCCEEEE-eCC-----CHHHHHHHHHCCCEEEEcCC
Confidence 44455689999988 668 89999999999999999743
No 119
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.24 E-value=1.3e+02 Score=26.28 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.9
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE 598 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~ 598 (841)
..+.|...++++|++. .+ .+-+.+.|.+.||-++...+
T Consensus 55 ~~~~l~~~~v~~vi~~-~i-----G~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GI-----GPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CC-----CcCHHHHHHHCCCEEEEcCC
Confidence 4555667899999994 68 89999999999999998776
No 120
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.92 E-value=85 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeec
Q psy8873 107 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 150 (841)
Q Consensus 107 i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~ 150 (841)
+.+.++.|.+.+.|++++..+..+....+...++..+.|+|++.
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 35677888899999999888754444555555555566665543
No 121
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=25.20 E-value=1.2e+02 Score=29.43 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHh
Q psy8873 275 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 354 (841)
Q Consensus 275 ~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~ 354 (841)
.-|+.||..|..+..- |-.- .....=+-+|.+|+++..-...++ -+.||-+|+.-+...|+-+
T Consensus 40 gf~aSALHEIaHWciA--G~~R--------R~l~DfGYWY~PDGR~~~qQ~~FE-----~VEvkPQAlEw~f~~a~G~-- 102 (164)
T PF04315_consen 40 GFFASALHEIAHWCIA--GPER--------RQLEDFGYWYCPDGRDAEQQAEFE-----QVEVKPQALEWLFSVAAGF-- 102 (164)
T ss_pred chHHHHHHHHHHHHhc--cccc--------cccccCCCCcCCCCCCHHHHHHHH-----hhhhchHHHHHHHHHHcCC--
Confidence 3588999999988763 5221 111122347788998866655554 4789999988877665422
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPT 399 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~ 399 (841)
.-.-+.|+..|| -..-.-+......++..+++.|++|.
T Consensus 103 ------~F~VS~DNL~g~-~~d~~~F~~~V~~qv~~yl~~glP~R 140 (164)
T PF04315_consen 103 ------PFRVSCDNLNGD-EPDRQAFKQKVHAQVLRYLENGLPPR 140 (164)
T ss_pred ------cceeeccCCCCC-CccHHHHHHHHHHHHHHHHHcCCChH
Confidence 122356777888 55567788999999999999999874
No 122
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=23.77 E-value=4.8e+02 Score=28.66 Aligned_cols=81 Identities=9% Similarity=0.084 Sum_probs=52.0
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEecc--------hhhhhHHHHHHHHHh-------hh-heeeecc
Q psy8873 89 VVSDYSAMDRVLKEERAYILNIVKQIKKA-GCNVLLVQKS--------ILRDAISDLAIHFLD-------KI-KVLVVKD 151 (841)
Q Consensus 89 ~i~~~~~l~~~~~~E~~~i~~~l~~i~~~-~~~lvi~~~~--------i~~~~v~~lal~~l~-------~~-~i~~v~~ 151 (841)
..++|+.+..+++.-.+.+.+.++...+. |++++.+.++ ++.+-..+.+.-+++ +. +.+++-+
T Consensus 139 l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH 218 (321)
T cd03309 139 LYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHH 218 (321)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence 44677777777776666777777777777 9999988653 455555655554333 22 4444444
Q ss_pred ccc---hhHHHHHHHhCCeEee
Q psy8873 152 IER---EDIEFVCKTLNTRPIA 170 (841)
Q Consensus 152 ~~~---~~L~~ia~~tGa~~i~ 170 (841)
... ..+++++.+ |+.+++
T Consensus 219 ~cG~~~~~l~~~~e~-g~dvl~ 239 (321)
T cd03309 219 SCGAAASLVPSMAEM-GVDSWN 239 (321)
T ss_pred eCCCcHHHHHHHHHc-CCCEEE
Confidence 333 347888775 888876
No 123
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.73 E-value=2e+02 Score=24.80 Aligned_cols=54 Identities=7% Similarity=0.027 Sum_probs=36.0
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
.++.+.+-++.+||++.+.+ +.+-.-..+++..++|-++...++. .|.+++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~-~~~~k~i~~~c~~~~Vpv~~~~t~~---eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAE-EHVTKKIKELCEEKSIKIVYIDTMK---ELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEeCCHH---HHHHHHCCc
Confidence 45566667789999999993 2223333466778899997666664 456666643
No 124
>PRK00865 glutamate racemase; Provisional
Probab=23.49 E-value=3.3e+02 Score=28.87 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred HHHHHhhhcccccccccc------ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHH
Q psy8873 67 GATILKQMNVIHPAAKMM------DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHF 140 (841)
Q Consensus 67 g~ti~k~~~~~~p~ak~~------~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~ 140 (841)
|-||++++--..|....+ ..++=..+.+++. +++.+.++.+.+.|++.++++-. +.+..+++.
T Consensus 17 GLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~-------~~~~~~~~~L~~~g~d~iVIaCN----Ta~~~~l~~ 85 (261)
T PRK00865 17 GLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIR-------ERTLEIVEFLLEYGVKMLVIACN----TASAVALPD 85 (261)
T ss_pred HHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHH-------HHHHHHHHHHHhCCCCEEEEeCc----hHHHHHHHH
Confidence 899999999989977653 3344445555554 45667778888899999998875 455567788
Q ss_pred Hh-hhheeeeccccchhHHHHHHHhCCe
Q psy8873 141 LD-KIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 141 l~-~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
|. ..++|+++ +.. .+...+..+++.
T Consensus 86 lr~~~~iPvig-i~~-a~~~a~~~~~~~ 111 (261)
T PRK00865 86 LRERYDIPVVG-IVP-AIKPAAALTRNG 111 (261)
T ss_pred HHHhCCCCEEe-eHH-HHHHHHHhcCCC
Confidence 87 46899998 643 444444444444
No 125
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=22.04 E-value=4.8e+02 Score=28.61 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc----hhhhhHHHHHHHHHhh-------h--heeeeccccch-
Q psy8873 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS----ILRDAISDLAIHFLDK-------I--KVLVVKDIERE- 155 (841)
Q Consensus 90 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~----i~~~~v~~lal~~l~~-------~--~i~~v~~~~~~- 155 (841)
.++|+.+.++++.=.+.+.+.++...+.|++++.+..+ ++.+-..+.+.-++.+ . +++.+......
T Consensus 162 ~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~ 241 (335)
T cd00717 162 YTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGAG 241 (335)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCH
Q ss_pred -hHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHH
Q psy8873 156 -DIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDA 231 (841)
Q Consensus 156 -~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~da 231 (841)
.+++++.+ |+.+++--...+.. +.++.-+++..+. |+...-+|.|+++.+.++.++.++.+
T Consensus 242 ~~~~~~~~~-~~~~~s~d~~~dl~--------e~k~~~g~~~~i~------Gni~p~~l~~~~e~i~~~v~~~l~~~ 303 (335)
T cd00717 242 GLLEDLAQL-GADVVGLDWRVDLD--------EARKRLGPKVALQ------GNLDPALLYAPKEAIEKEVKRILKAF 303 (335)
T ss_pred HHHHHHHhc-CCCEEEeCCCCCHH--------HHHHHhCCCeEEE------eCCChhhhcCCHHHHHHHHHHHHHHh
No 126
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.58 E-value=1.3e+02 Score=26.30 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHH
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEF 159 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ 159 (841)
.+.+...++++|++.+ ++.-+.+.|.+.||.++.......++.
T Consensus 54 ~~~l~~~~v~~vi~~~------iG~~a~~~l~~~gI~v~~~~~~~~v~e 96 (102)
T cd00562 54 ARLLALEGCDAVLVGG------IGGPAAAKLEAAGIKPIKAAEGGTIEE 96 (102)
T ss_pred HHHHHHCCCcEEEEcc------cCccHHHHHHHcCCEEEEcCCCCcHHH
Confidence 3445568999999987 899999999999999987765334433
No 127
>PRK06683 hypothetical protein; Provisional
Probab=21.32 E-value=2.3e+02 Score=24.36 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=36.1
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHH----HHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLA----IHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~----~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
.++.|.+-.+.+||++.+. ++.. .+++..++|.++...++. .|..++|-.
T Consensus 19 v~kaik~gkaklViiA~Da-----~~~~~~~i~~~~~~~~Vpv~~~~t~~---eLG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDA-----DMRLTHVIIRTALQHNIPITKVESVR---KLGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCC-----CHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCc
Confidence 3555666678999999999 5544 455678999998887664 466677754
Done!