Query psy8873
Match_columns 841
No_of_seqs 385 out of 2976
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyg_D T-complex protein 1 sub 100.0 5E-100 2E-104 878.1 56.4 448 354-840 65-518 (518)
2 3p9d_D T-complex protein 1 sub 100.0 7E-101 2E-105 886.0 42.0 453 354-840 73-528 (528)
3 3iyg_G T-complex protein 1 sub 100.0 8.4E-99 3E-103 867.2 57.7 446 356-840 65-514 (515)
4 3iyg_A T-complex protein 1 sub 100.0 7.4E-99 3E-103 870.3 56.8 443 358-839 68-527 (529)
5 3iyg_H T-complex protein 1 sub 100.0 1.2E-98 4E-103 864.9 56.0 441 356-840 67-514 (515)
6 3ruv_A Chaperonin, CPN; double 100.0 1.3E-98 5E-103 869.7 55.4 446 354-840 73-519 (543)
7 3ko1_A Chaperonin; 9-fold symm 100.0 5.4E-99 2E-103 872.5 51.2 448 354-840 84-533 (553)
8 1q3q_A Thermosome alpha subuni 100.0 5.8E-98 2E-102 865.3 55.3 448 354-840 77-525 (548)
9 3p9d_A T-complex protein 1 sub 100.0 1.7E-98 6E-103 870.5 49.6 448 354-840 78-548 (559)
10 1a6d_B Thermosome (beta subuni 100.0 9E-98 3E-102 863.8 54.8 448 354-840 75-523 (543)
11 3iyg_E T-complex protein 1 sub 100.0 2.6E-97 9E-102 855.7 56.5 447 353-839 63-514 (515)
12 1a6d_A Thermosome (alpha subun 100.0 1.6E-97 6E-102 861.0 54.7 446 354-840 76-522 (545)
13 3iyg_Z T-complex protein 1 sub 100.0 2E-97 7E-102 855.1 54.0 442 354-839 64-516 (517)
14 3iyg_B T-complex protein 1 sub 100.0 1.6E-96 6E-101 847.8 56.7 434 362-840 74-511 (513)
15 3iyg_Q T-complex protein 1 sub 100.0 1.9E-96 6E-101 848.0 56.2 442 356-840 67-512 (512)
16 3p9d_E T-complex protein 1 sub 100.0 1.5E-96 5E-101 854.8 48.5 447 354-840 99-558 (562)
17 3p9d_G T-complex protein 1 sub 100.0 3.5E-97 1E-101 858.0 39.5 445 353-840 77-527 (550)
18 3p9d_C T-complex protein 1 sub 100.0 4E-96 1E-100 849.7 42.7 443 358-840 77-586 (590)
19 3p9d_F T-complex protein 1 sub 100.0 1.6E-96 5E-101 853.9 37.8 444 356-840 73-537 (546)
20 3p9d_H T-complex protein 1 sub 100.0 1.1E-96 4E-101 857.1 34.1 446 354-840 80-548 (568)
21 3p9d_B T-complex protein 1 sub 100.0 2.7E-96 9E-101 849.6 35.7 442 354-840 72-518 (527)
22 3aq1_B Thermosome subunit; gro 100.0 8.1E-88 2.8E-92 773.1 44.2 466 335-840 9-476 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 9.9E-84 3.4E-88 742.5 46.9 399 355-840 69-525 (543)
24 1kp8_A Groel protein; chaperon 100.0 2.1E-83 7.1E-88 738.4 44.3 397 355-840 69-523 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 3.2E-84 1.1E-88 745.9 36.5 398 355-840 70-525 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 7.5E-83 2.6E-87 731.4 38.2 395 356-840 70-521 (546)
27 3aq1_B Thermosome subunit; gro 100.0 4.4E-63 1.5E-67 568.1 22.9 272 90-367 210-481 (500)
28 3iyg_D T-complex protein 1 sub 100.0 2.9E-57 9.9E-62 522.0 24.5 276 85-360 240-516 (518)
29 3iyg_A T-complex protein 1 sub 100.0 6.2E-57 2.1E-61 520.5 25.4 271 85-361 243-527 (529)
30 3iyg_B T-complex protein 1 sub 100.0 1.7E-56 5.7E-61 515.1 26.5 273 85-363 240-512 (513)
31 3iyg_H T-complex protein 1 sub 100.0 1.5E-56 5.1E-61 515.1 25.5 270 85-360 243-512 (515)
32 3iyg_G T-complex protein 1 sub 100.0 2E-56 6.7E-61 514.7 25.5 270 85-360 241-512 (515)
33 3ko1_A Chaperonin; 9-fold symm 100.0 1.5E-56 5E-61 518.2 23.0 344 19-368 24-539 (553)
34 3p9d_D T-complex protein 1 sub 100.0 1.2E-57 4E-62 525.8 12.8 276 85-360 249-526 (528)
35 3iyg_Z T-complex protein 1 sub 100.0 3.2E-56 1.1E-60 512.6 22.6 269 85-360 237-515 (517)
36 3iyg_Q T-complex protein 1 sub 100.0 8E-56 2.8E-60 509.9 25.8 271 85-360 238-510 (512)
37 3ruv_A Chaperonin, CPN; double 100.0 7.6E-56 2.6E-60 512.4 25.6 340 19-364 13-521 (543)
38 3p9d_A T-complex protein 1 sub 100.0 3.4E-56 1.2E-60 516.4 22.5 345 16-366 15-552 (559)
39 3iyg_E T-complex protein 1 sub 100.0 1.7E-55 5.7E-60 507.6 28.0 338 18-361 3-514 (515)
40 1a6d_A Thermosome (alpha subun 100.0 1.1E-55 3.6E-60 511.4 25.1 341 19-365 16-525 (545)
41 1q3q_A Thermosome alpha subuni 100.0 9.6E-56 3.3E-60 512.1 23.7 342 18-365 16-528 (548)
42 1a6d_B Thermosome (beta subuni 100.0 1.3E-55 4.6E-60 510.9 24.5 340 19-364 15-525 (543)
43 3p9d_B T-complex protein 1 sub 100.0 3.6E-56 1.2E-60 514.5 16.1 342 18-365 10-521 (527)
44 3p9d_G T-complex protein 1 sub 100.0 1E-55 3.5E-60 511.4 19.5 275 86-366 257-531 (550)
45 3p9d_C T-complex protein 1 sub 100.0 8.9E-56 3E-60 512.4 16.9 274 85-363 258-587 (590)
46 3p9d_E T-complex protein 1 sub 100.0 3.7E-55 1.3E-59 507.9 22.0 270 86-361 285-557 (562)
47 3p9d_H T-complex protein 1 sub 100.0 1.3E-55 4.5E-60 512.4 14.6 275 85-364 262-550 (568)
48 3p9d_F T-complex protein 1 sub 100.0 2.6E-54 8.9E-59 500.4 17.6 338 18-361 10-536 (546)
49 1we3_A CPN60(groel); chaperoni 100.0 3.1E-48 1.1E-52 447.1 19.1 339 16-366 1-529 (543)
50 1iok_A Chaperonin 60; chaperon 100.0 3.3E-48 1.1E-52 446.4 14.4 336 16-365 2-528 (545)
51 1kp8_A Groel protein; chaperon 100.0 1.4E-47 4.8E-52 440.8 16.9 335 17-366 2-527 (547)
52 3rtk_A 60 kDa chaperonin 2; he 100.0 1.1E-47 3.8E-52 440.3 16.0 335 16-366 1-525 (546)
53 1gml_A T-complex protein 1 sub 100.0 3.1E-34 1.1E-38 283.7 18.2 173 486-664 1-174 (178)
54 1ass_A Thermosome; chaperonin, 100.0 8.9E-30 3E-34 246.6 14.6 154 492-650 1-154 (159)
55 1gml_A T-complex protein 1 sub 99.9 1.7E-25 5.8E-30 221.1 10.6 146 67-219 28-174 (178)
56 1ass_A Thermosome; chaperonin, 99.9 2.6E-22 8.9E-27 194.2 7.9 134 66-205 21-154 (159)
57 3m6c_A 60 kDa chaperonin 1; ch 99.4 1.6E-12 5.6E-17 125.3 10.6 146 489-675 2-166 (194)
58 1srv_A Protein (groel (HSP60 c 99.3 1.2E-11 4E-16 113.8 10.5 116 494-633 1-134 (145)
59 3osx_A 60 kDa chaperonin; alph 99.3 3.9E-11 1.3E-15 115.9 14.4 142 493-675 13-173 (201)
60 1srv_A Protein (groel (HSP60 c 99.0 1.1E-09 3.9E-14 100.7 9.3 94 105-201 40-144 (145)
61 3osx_A 60 kDa chaperonin; alph 98.8 2E-08 6.8E-13 97.2 11.8 94 105-201 53-157 (201)
62 3m6c_A 60 kDa chaperonin 1; ch 98.8 2.9E-08 9.9E-13 95.9 12.3 94 105-201 46-150 (194)
63 3v7e_A Ribosome-associated pro 50.5 18 0.00062 29.8 4.6 51 110-161 19-69 (82)
64 2xzm_U Ribosomal protein L7AE 48.2 32 0.0011 30.9 6.2 52 110-161 32-83 (126)
65 3v7q_A Probable ribosomal prot 47.0 28 0.00097 29.8 5.5 54 110-167 27-80 (101)
66 2lbw_A H/ACA ribonucleoprotein 45.9 42 0.0014 29.8 6.6 51 110-160 28-78 (121)
67 1xbi_A 50S ribosomal protein L 39.9 29 0.00098 30.9 4.5 50 111-160 38-87 (120)
68 3on1_A BH2414 protein; structu 39.2 45 0.0015 28.5 5.5 54 110-167 26-79 (101)
69 1vq8_F 50S ribosomal protein L 36.7 33 0.0011 30.4 4.4 53 111-166 38-90 (120)
70 1eo1_A Hypothetical protein MT 35.5 67 0.0023 28.3 6.3 52 110-167 57-108 (124)
71 2xzm_U Ribosomal protein L7AE 35.1 78 0.0027 28.3 6.6 53 555-607 32-84 (126)
72 2fc3_A 50S ribosomal protein L 34.9 34 0.0012 30.5 4.2 48 111-158 37-84 (124)
73 1rlg_A 50S ribosomal protein L 33.3 31 0.0011 30.5 3.6 49 111-159 36-84 (119)
74 2aif_A Ribosomal protein L7A; 33.2 41 0.0014 30.5 4.5 53 111-166 50-102 (135)
75 4a18_G RPL30; ribosome, eukary 32.7 77 0.0026 27.2 6.0 54 109-166 29-83 (104)
76 1o13_A Probable NIFB protein; 32.6 56 0.0019 29.6 5.3 52 110-167 68-119 (136)
77 1o13_A Probable NIFB protein; 32.4 86 0.0029 28.3 6.6 52 555-612 68-119 (136)
78 3o85_A Ribosomal protein L7AE; 32.0 42 0.0014 29.9 4.3 53 111-166 40-92 (122)
79 2yx6_A Hypothetical protein PH 31.1 66 0.0022 28.2 5.4 53 109-167 54-106 (121)
80 1eo1_A Hypothetical protein MT 31.0 1.2E+02 0.0041 26.6 7.2 52 555-612 57-108 (124)
81 2yx6_A Hypothetical protein PH 30.4 1E+02 0.0035 26.9 6.7 53 554-612 54-106 (121)
82 3v7e_A Ribosome-associated pro 30.2 55 0.0019 26.8 4.4 53 555-611 19-71 (82)
83 3jyw_G 60S ribosomal protein L 30.1 30 0.001 30.4 2.9 52 110-161 33-84 (113)
84 3iz5_f 60S ribosomal protein L 30.0 95 0.0033 27.1 6.1 52 109-161 33-85 (112)
85 2lbw_A H/ACA ribonucleoprotein 29.8 1.2E+02 0.0042 26.7 7.0 53 555-610 28-80 (121)
86 3cpq_A 50S ribosomal protein L 29.4 79 0.0027 27.4 5.5 53 110-166 29-82 (110)
87 1w41_A 50S ribosomal protein L 28.0 97 0.0033 26.3 5.8 53 110-166 24-77 (101)
88 2q8p_A Iron-regulated surface 27.2 78 0.0027 31.6 6.0 52 111-167 53-110 (260)
89 3u5c_M 40S ribosomal protein S 26.8 43 0.0015 30.7 3.4 53 109-161 47-101 (143)
90 2ale_A SNU13, NHP2/L7AE family 26.7 56 0.0019 29.6 4.2 53 111-166 41-93 (134)
91 2wfb_A Putative uncharacterize 26.5 1.2E+02 0.004 26.5 6.3 51 555-611 59-110 (120)
92 1vq8_F 50S ribosomal protein L 26.3 1.2E+02 0.004 26.8 6.1 54 555-611 37-90 (120)
93 1xbi_A 50S ribosomal protein L 25.9 1.1E+02 0.0036 27.1 5.8 54 555-611 37-90 (120)
94 3u5e_c L32, RP73, YL38, 60S ri 25.6 1.1E+02 0.0039 26.1 5.8 54 109-166 29-83 (105)
95 2fc3_A 50S ribosomal protein L 24.2 1.2E+02 0.004 26.9 5.8 54 555-611 36-89 (124)
96 2wfb_A Putative uncharacterize 24.2 73 0.0025 27.8 4.4 39 110-154 59-97 (120)
97 3v7q_A Probable ribosomal prot 24.1 96 0.0033 26.4 5.0 54 555-612 27-80 (101)
98 1rlg_A 50S ribosomal protein L 23.5 1.1E+02 0.0038 26.9 5.4 54 555-611 35-88 (119)
99 3izc_H 60S ribosomal protein R 22.7 89 0.003 31.5 5.0 55 109-166 138-192 (256)
100 2re2_A Uncharacterized protein 21.9 1.8E+02 0.0063 26.0 6.8 51 555-612 71-121 (136)
101 4ay7_A Methylcobalamin\: coenz 21.8 2.2E+02 0.0076 29.9 8.5 80 90-170 175-267 (348)
102 3j21_Z 50S ribosomal protein L 21.3 1.3E+02 0.0045 25.4 5.3 48 110-158 23-71 (99)
103 3psh_A Protein HI_1472; substr 21.2 92 0.0032 32.3 5.3 52 111-167 77-154 (326)
104 3o85_A Ribosomal protein L7AE; 20.7 1.5E+02 0.0052 26.2 5.7 54 555-611 39-92 (122)
105 2re2_A Uncharacterized protein 20.6 1.2E+02 0.0041 27.3 5.2 50 110-166 71-120 (136)
No 1
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=4.7e-100 Score=878.15 Aligned_cols=448 Identities=71% Similarity=1.087 Sum_probs=430.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++..+++.|.+
T Consensus 65 P~akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~ 144 (518)
T 3iyg_D 65 PAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLN 144 (518)
T ss_pred HHHHHHHHHHHHhhhhhCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHHHHH
Confidence 55778999999999999999999999999999999999999999999999999999999999999999998778899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++..++.+|+++|+|+++.||+..||++++|++|+++|.+ +||++++||
T Consensus 145 vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~mp~~i~n~ 223 (518)
T 3iyg_D 145 SAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKA 223 (518)
T ss_pred HhHhhhccccchhhHHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc-CCCccccCc
Confidence 9999999999999999999999999999985434567999999999999999999999999999999955 899999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe-----cCCcccccccHHHHHHHHh
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLV-----QKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~-----~~~I~~~~l~~~~~~~l~~ 588 (841)
||++++|+|++++++++.++.++++++++.+.++|++++.++++++++.|+||||+ +++| ++.+++||.+
T Consensus 224 kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I-----~~~Al~~L~~ 298 (518)
T 3iyg_D 224 KIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDAL-----SDLALHFLNK 298 (518)
T ss_pred eEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCc-----CHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 6777 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC-eeEEEEEccCCCCceEEEEEeCCCHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN-SRFVKISGIQNPGRTLTVVVRGSNKLVLD 667 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~~~~~~~~~TIllrG~t~~~l~ 667 (841)
+||++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+ ++|++|++|+++++.|||+|||+|+.+++
T Consensus 299 ~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~ 378 (518)
T 3iyg_D 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIE 378 (518)
T ss_pred cCcEEEecCCHHHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999998459999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCCh
Q psy8873 668 EAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747 (841)
Q Consensus 668 e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (841)
|.||+++||++++|+++++|++|||||++|++++.+|+ +++.+.+++
T Consensus 379 E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~ 425 (518)
T 3iyg_D 379 EAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLT---------------------------------EYSRTLSGM 425 (518)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHH---------------------------------HHhhcCChH
Confidence 99999999999999999999999999999999999999 777788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHH
Q psy8873 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETV 827 (841)
Q Consensus 748 ~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a 827 (841)
+|+++++|++||+.||++|++|||+|+.+++.+|++.|..+++++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 426 ~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a 505 (518)
T 3iyg_D 426 ESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETV 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred HHHHchhhhhcCC
Q psy8873 828 RSILKIDDIVNTL 840 (841)
Q Consensus 828 ~~iL~iD~iI~~~ 840 (841)
++|||||+||+++
T Consensus 506 ~~iL~iD~ii~~~ 518 (518)
T 3iyg_D 506 RSILKIDDVVNTR 518 (518)
T ss_pred HHHHhhcceEecC
Confidence 9999999999874
No 2
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=6.8e-101 Score=886.01 Aligned_cols=453 Identities=59% Similarity=0.949 Sum_probs=434.6
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 73 P~akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~l~~ 152 (528)
T 3p9d_D 73 PVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVR 152 (528)
T ss_dssp TTHHHHHHHHHHHHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~n 512 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++ .++.+|+++|+|++++||+++||++++|++|+++| ++..||+.++|
T Consensus 153 va~tsl~sK~~~~~~~~i~~livdAv~~V~~~-~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien 231 (528)
T 3p9d_D 153 AASTSLSSKIVSQYSSFLAPLAVDSVLKISDE-NSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEK 231 (528)
T ss_dssp HHHHHSCSSSCSTTHHHHHHHHHHHHHTTCCT-TTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESS
T ss_pred HHHHHhcCCccchhHHHHHHHHHHHHHHhccc-cCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccC
Confidence 99999999999999999999999999999863 24679999999999999999999999999999999 55339999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++.++++++++.|+||||++++|.+|++++++++||.++||+
T Consensus 232 ~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~ 311 (528)
T 3p9d_D 232 AKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIM 311 (528)
T ss_dssp EEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCC
T ss_pred ceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccC--CCCceEEEEEeCCCHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ--NPGRTLTVVVRGSNKLVLDEAA 670 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~--~~~~~~TIllrG~t~~~l~e~~ 670 (841)
+++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+ +.+++|||+|||+|+.+++|.|
T Consensus 312 av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~k 391 (528)
T 3p9d_D 312 VVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETE 391 (528)
T ss_dssp EEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 5238999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHH
Q psy8873 671 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAY 750 (841)
Q Consensus 671 r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (841)
|+++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+
T Consensus 392 r~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~ 438 (528)
T 3p9d_D 392 RSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLS---------------------------------KEARSMEGVQAF 438 (528)
T ss_dssp HHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHH---------------------------------HCCTTSCHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHH---------------------------------HHhhccChHHHH
Confidence 99999999999999999999999999999999999 677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHH
Q psy8873 751 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830 (841)
Q Consensus 751 ~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~i 830 (841)
++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|
T Consensus 439 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~i 518 (528)
T 3p9d_D 439 IWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSI 518 (528)
T ss_dssp THHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887788999999999999999999999999999999999999999
Q ss_pred HchhhhhcCC
Q psy8873 831 LKIDDIVNTL 840 (841)
Q Consensus 831 L~iD~iI~~~ 840 (841)
||||+||+++
T Consensus 519 L~iD~ii~~~ 528 (528)
T 3p9d_D 519 LRIDDIAFSR 528 (528)
T ss_dssp HHCSCCCBCC
T ss_pred HhhhHheecC
Confidence 9999999874
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=8.4e-99 Score=867.17 Aligned_cols=446 Identities=30% Similarity=0.511 Sum_probs=424.4
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHh
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSA 435 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia 435 (841)
.+++++.+++||.++||||||+++||++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.|.++|
T Consensus 65 Akll~e~a~~qd~e~GDGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va 144 (515)
T 3iyg_G 65 AKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNII 144 (515)
T ss_pred HHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999998876789999999
Q ss_pred hhhccCcchhhhhhHHHHHHHHHHhhhcCC-CCCCccccc-ceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 436 ATSLNSKVVSQQASLLAPIAVDAVLKVVNP-QRDTNVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 436 ~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~-~~~~~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|++++|..+.|.+++++++++|+..+.++ .....+|++ +|+|++++||+++||++++|++|++++.+.+||+.++||
T Consensus 145 ~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~ 224 (515)
T 3iyg_G 145 NSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNP 224 (515)
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeee
Confidence 999999999999999999999999998632 122346765 599999999999999999999999999434899999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
||++++|+|+++++++++++.++++++++++.+.|++++++++++|++.|++|||++++| ++++++||.++||++
T Consensus 225 kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I-----~~~al~~L~~~~I~a 299 (515)
T 3iyg_G 225 RIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI-----SDLAQHYLMRANITA 299 (515)
T ss_pred EEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCcc-----CHHHHHHHHHCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
++++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|+++ +.|||+|||+|+.+++|.||+
T Consensus 300 v~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~er~ 378 (515)
T 3iyg_G 300 IRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KACTILLRGASKEILSEVERN 378 (515)
T ss_pred eccCCHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCC-CeEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|++++++++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 379 i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~eq~~i 425 (515)
T 3iyg_G 379 LQDAMQVCRNVLLDPQLVPGGGASEMAVAHALT---------------------------------EKSKAMTGVEQWPY 425 (515)
T ss_pred HHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHH---------------------------------HHhhccCcHHHHHH
Confidence 999999999999999999999999999999999 77788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-CCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~-~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
++||+||+.||++||+|||+|+.+++.+|++.|..+ +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++||
T Consensus 426 ~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL 505 (515)
T 3iyg_G 426 RAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLL 505 (515)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999764 4579999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||+||...
T Consensus 506 ~iD~ii~~~ 514 (515)
T 3iyg_G 506 RIDDIVSGH 514 (515)
T ss_pred HHHheeecC
Confidence 999999753
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=7.4e-99 Score=870.31 Aligned_cols=443 Identities=29% Similarity=0.496 Sum_probs=420.4
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHHHHhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLIKSAA 436 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~~ia~ 436 (841)
++++.+++||.++||||||++|||++||+++.+++++|+||+.|++||++|.+.++++|++ +++|++..+++.|.++|+
T Consensus 68 ll~~~a~~qd~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~ 147 (529)
T 3iyg_A 68 VLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAK 147 (529)
T ss_pred HHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 3445666788999999999999999999999999999999999999999999999999999 999988667899999999
Q ss_pred hhccCcchhhhhhHHHHHHHHHHhhhcCC--CCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecce
Q psy8873 437 TSLNSKVVSQQASLLAPIAVDAVLKVVNP--QRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAK 514 (841)
Q Consensus 437 t~l~sk~~~~~~~~ls~lv~~A~~~v~~~--~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~k 514 (841)
|+++||+.+.|.++|++|+++|+.++++. .+...||+++|+|++.+||++.||++++|++|++++.+.+||+.++|||
T Consensus 148 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~k 227 (529)
T 3iyg_A 148 TSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAK 227 (529)
T ss_pred HHhccCcccccHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCce
Confidence 99999999999999999999999999742 2234688889999999999999999999999999994449999999999
Q ss_pred EEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEE
Q psy8873 515 IGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594 (841)
Q Consensus 515 illl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v 594 (841)
|++++|+|++++++++.++.++++++++.+.++|++++.+++++|++.|++|||++++| ++++++||.++||+++
T Consensus 228 Illl~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I-----~d~al~~L~~~gI~av 302 (529)
T 3iyg_A 228 IACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYFVEAGAMAV 302 (529)
T ss_pred EEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHHcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ecCChhHHHHHHHHcCCcccccCCCCC------CCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 595 KDIEREDIEFVCKTLNTRPIASLDHFL------PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 595 ~~v~~~~L~~ia~~tGa~ii~~l~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
+++++++|+|||++|||++++++++++ ++++|+|+.|++.++|+++|++|++|+++ +.|||+|||+|+.+++|
T Consensus 303 ~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E 381 (529)
T 3iyg_A 303 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR-TSASVILRGANDFMCDE 381 (529)
T ss_pred ccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC-ceEEEEECCchHHHHHH
Confidence 999999999999999999999987654 67899999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
.||+++||++++|+++++|++|||||++|++|+.+|+ +++.+.++++
T Consensus 382 ~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~---------------------------------~~~~~~~g~e 428 (529)
T 3iyg_A 382 MERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLE---------------------------------NYATSMGSRE 428 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHH---------------------------------HHhhhcCChH
Confidence 9999999999999999999999999999999999999 7788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC--------CceeEEccCCccccccccCcccchHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE--------TTTGINVRKGAITNILEENVVQPLLVSTSAI 820 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~--------~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l 820 (841)
|+++++||+||+.||++||+|||+|+.+++.+|++.|..++ .++|||+.+|++.||++.|||||+.+|+++|
T Consensus 429 q~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al 508 (529)
T 3iyg_A 429 QLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSL 508 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCCCccChhhccCEecHHHHHHHH
Confidence 99999999999999999999999999999999999998765 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhhhhcC
Q psy8873 821 TLSTETVRSILKIDDIVNT 839 (841)
Q Consensus 821 ~~A~e~a~~iL~iD~iI~~ 839 (841)
++|+|+|+||||||+||+.
T Consensus 509 ~~A~e~a~~iL~iD~ii~~ 527 (529)
T 3iyg_A 509 KFATEAAITILRIDDLIKL 527 (529)
T ss_pred HHHHHHHHHHHhHHhhhcC
Confidence 9999999999999999975
No 5
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.2e-98 Score=864.92 Aligned_cols=441 Identities=29% Similarity=0.489 Sum_probs=423.0
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc----hHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD----RENL 431 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~----~~~l 431 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+ ++.|
T Consensus 67 Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L 146 (515)
T 3iyg_H 67 AKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLL 146 (515)
T ss_pred HHHHHHHHHHhhceeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999999986445 6788
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCC--CCCc
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANV--NGPK 508 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~--~m~~ 508 (841)
.++|+|+++||+.+.|.++|++|+++|+.+++ +.+|+++|+|++..||+..||++++|++|+++| ++. +||+
T Consensus 147 ~~va~tsl~sK~~s~~~~~i~~livdAv~~V~-----~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~ 221 (515)
T 3iyg_H 147 EKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-----DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPK 221 (515)
T ss_pred HHHHHHHhcCCcccccHHHHHHHHHHHHHHhc-----ccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCc
Confidence 99999999999999999999999999999995 357888999999999999999999999999999 551 4589
Q ss_pred eeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 509 ~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
.++||||++++++|++++++++.++.++++++++++.++|++++.++++++++.|++|||++++| ++++++||.+
T Consensus 222 ~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I-----~dla~~~l~~ 296 (515)
T 3iyg_H 222 KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFAD 296 (515)
T ss_pred cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcc-----cHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
+||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|
T Consensus 297 ~gI~~v~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~t~~~l~E 375 (515)
T 3iyg_H 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-KTCTIILRGGAEQFMEE 375 (515)
T ss_pred cCCcccccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC-ceEEEEEeCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
.+|+++||++++|++++++++|||||++|++++.+|+ +++.+.++++
T Consensus 376 ~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~e 422 (515)
T 3iyg_H 376 TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLR---------------------------------DYSRTIPGKQ 422 (515)
T ss_pred HHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHH---------------------------------HHHhcCChHH
Confidence 9999999999999999999999999999999999999 7777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
|+++++|++||+.||++||+|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+|+
T Consensus 423 q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~ 502 (515)
T 3iyg_H 423 QLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAAC 502 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCcccccHhccCEECHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877789999999999999999999999999999999999999
Q ss_pred HHHchhhhhcCC
Q psy8873 829 SILKIDDIVNTL 840 (841)
Q Consensus 829 ~iL~iD~iI~~~ 840 (841)
+|||||+||++.
T Consensus 503 ~iL~iD~ii~~~ 514 (515)
T 3iyg_H 503 LIVSVDETIKNP 514 (515)
T ss_pred HHHHHHHHhcCC
Confidence 999999999864
No 6
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=1.3e-98 Score=869.73 Aligned_cols=446 Identities=37% Similarity=0.607 Sum_probs=429.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 73 P~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~ 152 (543)
T 3ruv_A 73 PAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTK 152 (543)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++ ++.||+++|+|++..||++.||++++|++|+++|.+.+||+.++||
T Consensus 153 va~tsl~sK~~~~~~~~i~~livdAv~~V~~~--~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~ 230 (543)
T 3ruv_A 153 IAMTSITGKGAEKAKEKLAEIIVEAVSAVVDD--EGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDA 230 (543)
T ss_dssp HHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCT--TSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEE
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHhhcc--CCCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCc
Confidence 99999999999999999999999999999863 3559999999999999999999999999999999444899999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
||++++++|++++++++.++.++++++++++.++|++++++++++|++.|+||||++++| ++.+++||.++||++
T Consensus 231 kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I-----~~~al~~L~~~gI~~ 305 (543)
T 3ruv_A 231 KIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAKEGIVA 305 (543)
T ss_dssp EEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCB-----CHHHHHHHHHTTCEE
T ss_pred EEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCc-----cHHHHHHHHHcCcEE
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
++++++++|+|||++|||++++++++++++++|+|+.|++.++|++++++|++|.++ +.|||+|||+|+.+++|.||++
T Consensus 306 v~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~TI~lrG~te~~l~E~kr~l 384 (543)
T 3ruv_A 306 ARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAV 384 (543)
T ss_dssp ECSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCC-ceeEEEecCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++|+++++|++|||||++|++++.+|+ +++.+.++++|++++
T Consensus 385 ~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i~ 431 (543)
T 3ruv_A 385 DDAVGVVGCTIEDGRIVSGGGSTEVELSMKLR---------------------------------EYAEGISGREQLAVR 431 (543)
T ss_dssp HHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCeecCCcHHHHHHHHHHH---------------------------------HHhhcCChHHHHHHH
Confidence 99999999999999999999999999999999 777788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-cCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~-~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
+|++||+.||++|++|||+|+.+++.+|++.|. .++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||
T Consensus 432 ~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~ 511 (543)
T 3ruv_A 432 AFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLR 511 (543)
T ss_dssp HHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999997 6777899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|++.
T Consensus 512 id~ii~~~ 519 (543)
T 3ruv_A 512 IDDVIAAE 519 (543)
T ss_dssp CCEEEEEC
T ss_pred HHhheecC
Confidence 99999753
No 7
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=5.4e-99 Score=872.49 Aligned_cols=448 Identities=35% Similarity=0.569 Sum_probs=428.8
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++.+++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 84 P~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~ 163 (553)
T 3ko1_A 84 PAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRK 163 (553)
T ss_dssp HHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHH
T ss_pred hhHHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+.+.|.++|++|+++|+.+++++. ....||+++|+|++..||++.||++++|++|+++|.+.+||+.++|
T Consensus 164 vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien 243 (553)
T 3ko1_A 164 IAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLEN 243 (553)
T ss_dssp HHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBS
T ss_pred HHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCcccccc
Confidence 999999999999999999999999999998642 1124899999999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++++++++|++.|++|||++++| ++.+++||.++||+
T Consensus 244 ~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I-----~~~al~~L~~~gI~ 318 (553)
T 3ko1_A 244 AKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGI-----DEVAQSYLAKKGVL 318 (553)
T ss_dssp CEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCB-----CSHHHHHHHHHTCE
T ss_pred ceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccCh-----HHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|++|+
T Consensus 319 ~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~-~~~TI~lrG~te~~l~E~er~ 397 (553)
T 3ko1_A 319 AVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISILIRGGLERLVDETERA 397 (553)
T ss_dssp EECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS-SCEEEEECCSSTTHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCC-ceEEEeeeccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 398 l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i 444 (553)
T 3ko1_A 398 LRDALGTVADVIKDGRAIAGGGAVEIEIAKKLR---------------------------------KYAPQVGGKEQLAV 444 (553)
T ss_dssp HHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhhcCceecCCceeEeHHHHHHH---------------------------------HhccccCChhHhHH
Confidence 999999999999999999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-CceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++ .++|||+.+|++.||++.|||||+.||+++|++|+|+|++||
T Consensus 445 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL 524 (553)
T 3ko1_A 445 EAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVL 524 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEE
Confidence 9999999999999999999999999999999997766 789999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||++|++.
T Consensus 525 ~iD~ii~~~ 533 (553)
T 3ko1_A 525 RIDDVVSAG 533 (553)
T ss_dssp HEEEECCC-
T ss_pred ehHHHHHhh
Confidence 999999864
No 8
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=5.8e-98 Score=865.25 Aligned_cols=448 Identities=37% Similarity=0.609 Sum_probs=428.2
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 77 P~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~ 156 (548)
T 1q3q_A 77 PAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLK 156 (548)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHH
T ss_pred hHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 44667888999999999999999999999999999999999999999999999999999999999999988667899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+...|.++|++|+++|+.+++++. ....+|+++|+|++++|++++||++++|++|+++|.+.+||+.++|
T Consensus 157 va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien 236 (548)
T 1q3q_A 157 IAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVEN 236 (548)
T ss_dssp HHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESS
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecC
Confidence 999999999999999999999999999997532 1235888999999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|+++++++++++++.|++|||++++| ++.+++||.++||+
T Consensus 237 ~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~ 311 (548)
T 1q3q_A 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAKYGIM 311 (548)
T ss_dssp EEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCB-----CHHHHHHHHHTTCE
T ss_pred CEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCc-----CHHHHHHHHHCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|.||+
T Consensus 312 av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~er~ 390 (548)
T 1q3q_A 312 AVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVTILIRGGTEHVIDEVERA 390 (548)
T ss_dssp EECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHH
T ss_pred EEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-CeEEEEECCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 391 l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~q~~i 437 (548)
T 1q3q_A 391 LEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLD---------------------------------EYAKQVGGKEALAI 437 (548)
T ss_dssp HHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHH---------------------------------HHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHH---------------------------------HHhhhcCCcHHHHH
Confidence 999999999999999999999999999999999 67777788999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||
T Consensus 438 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 517 (548)
T 1q3q_A 438 ENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILR 517 (548)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999977667899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|...
T Consensus 518 iD~iI~~~ 525 (548)
T 1q3q_A 518 IDDVIAAK 525 (548)
T ss_dssp CCEEEECC
T ss_pred HHHHHhcC
Confidence 99999763
No 9
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=1.7e-98 Score=870.46 Aligned_cols=448 Identities=30% Similarity=0.494 Sum_probs=426.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-ccccCCccchHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE-MSTPITLADRENLI 432 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~~~~~~~~~l~ 432 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|++ +++|++..+++.|.
T Consensus 78 P~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~ 157 (559)
T 3p9d_A 78 PAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLI 157 (559)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999 99999866688999
Q ss_pred HHhhhhccCcchhhhhhHHHHHHHHHHhhhcC--CCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCcee
Q psy8873 433 KSAATSLNSKVVSQQASLLAPIAVDAVLKVVN--PQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV 510 (841)
Q Consensus 433 ~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~--~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~ 510 (841)
++|+|+++||+.+.|.++|++|+++|+.++++ +.+++.+|++.|+|++++||+++||++++|++|+++|.+.+||+.+
T Consensus 158 ~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~i 237 (559)
T 3p9d_A 158 NIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRI 237 (559)
T ss_dssp HHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEE
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceee
Confidence 99999999999999999999999999999973 1224679999999999999999999999999999999444899999
Q ss_pred e--cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 511 E--KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 511 ~--n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
+ ||||++++++|++++++++.++.++++++++.+.++|++++.+++++|++.|++|||++++| ++.+++||.+
T Consensus 238 e~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I-----~~~al~~L~~ 312 (559)
T 3p9d_A 238 AGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVE 312 (559)
T ss_dssp CSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCC-----CGGGTHHHHH
T ss_pred ccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCC-----CHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccC------CCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
++|++|+++++.+|+|||++|||++++++ ++++++++|+|+.|++.++++++|++|++|.++ ++|||+|||+|
T Consensus 313 ~~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~t 391 (559)
T 3p9d_A 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKH-SSSSIILRGAN 391 (559)
T ss_dssp TTCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSS-CCCCEEEEESC
T ss_pred cCCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCC-CEEEEEEcCCC
Confidence 99999999999999999999999999998 789999999999999999999999999999886 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD 742 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (841)
+.+++|++|+++||++++|+++++|++|||||++|++|+.+|+ +++.
T Consensus 392 e~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~ 438 (559)
T 3p9d_A 392 DYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLD---------------------------------NFAT 438 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHH---------------------------------HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHH---------------------------------HHhc
Confidence 9999999999999999999999999999999999999999999 7777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC------------ceeEEccCCccccccccCcc
Q psy8873 743 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET------------TTGINVRKGAITNILEENVV 810 (841)
Q Consensus 743 ~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~------------~~Gid~~~g~~~d~~~~gI~ 810 (841)
+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.++++ ++|||+.+|++.||++.|||
T Consensus 439 ~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~ 518 (559)
T 3p9d_A 439 TVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVL 518 (559)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC----CCCCCCCEEECTTSSSEEESTTSSCC
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccccccccccccccccceeEECCCCcEeehhhccCE
Confidence 889999999999999999999999999999999999999999987654 79999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 811 QPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 811 D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
||+.||+++|++|+|+|++|||||++|++.
T Consensus 519 dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 548 (559)
T 3p9d_A 519 EPTISKVKSLKSALEACVAILRIDTMITVD 548 (559)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHTEEEEEECC
T ss_pred ecHHHHHHHHHHHHHHHHHHHhHHhhhhcC
Confidence 999999999999999999999999999763
No 10
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=9e-98 Score=863.82 Aligned_cols=448 Identities=35% Similarity=0.595 Sum_probs=427.6
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++|++..+++.|.+
T Consensus 75 P~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~ 154 (543)
T 1a6d_B 75 PAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLK 154 (543)
T ss_dssp HHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHH
T ss_pred hHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999988667899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+...|.++|++|+++|+.+++++. ....+|+++|+|++++||+++||++++|++|+++|.+.+||+.++|
T Consensus 155 va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien 234 (543)
T 1a6d_B 155 MAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKD 234 (543)
T ss_dssp HHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEE
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecC
Confidence 999999999999999999999999999997532 1135889999999999999999999999999999944489999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++.+++++|++.|++|||++++| ++.+++||.++||+
T Consensus 235 ~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~ 309 (543)
T 1a6d_B 235 AKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSRAGIY 309 (543)
T ss_dssp EEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB-----CHHHHHHHHHTTCE
T ss_pred CeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCc-----CHHHHHHHHHCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|++|+
T Consensus 310 av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~ 388 (543)
T 1a6d_B 310 AVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVSILVRGETEHVVDEMERS 388 (543)
T ss_dssp EECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS-SCEEEEEEESSHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 389 l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~~q~~i 435 (543)
T 1a6d_B 389 ITDSLHVVASALEDGAYAAGGGATAAEIAFRLR---------------------------------SYAQKIGGRQQLAI 435 (543)
T ss_dssp HHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCCccHHHHHHHHHHH---------------------------------HHhhhcCChHHHHH
Confidence 999999999999999999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||.+.|||||+.+|+++|++|+|+|++|||
T Consensus 436 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 515 (543)
T 1a6d_B 436 EKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILR 515 (543)
T ss_dssp HHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987777899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|+..
T Consensus 516 id~iI~~~ 523 (543)
T 1a6d_B 516 IDDVIATK 523 (543)
T ss_dssp EEEEEC--
T ss_pred HHHHHhcC
Confidence 99999763
No 11
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.6e-97 Score=855.68 Aligned_cols=447 Identities=39% Similarity=0.622 Sum_probs=426.7
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc--cchHH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL--ADREN 430 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~--~~~~~ 430 (841)
||..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++. .+++.
T Consensus 63 hP~Akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~ 142 (515)
T 3iyg_E 63 HQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEP 142 (515)
T ss_pred CHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999998753 35789
Q ss_pred HHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCcee
Q psy8873 431 LIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV 510 (841)
Q Consensus 431 l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~ 510 (841)
|.++|+|+++||....|.++|+++++||+..+.+. +...+|+++|+|++++||++.||++++|++|+++|.+.+||+.+
T Consensus 143 l~~vA~tsl~sK~i~~~~~~l~~l~~dav~~V~~~-~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~ 221 (515)
T 3iyg_E 143 LIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADM-QRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQV 221 (515)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHhhccc-ccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccC
Confidence 99999999999999999999999999999999653 23468889999999999999999999999999999434999999
Q ss_pred ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcC
Q psy8873 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590 (841)
Q Consensus 511 ~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~ 590 (841)
+|+||++++|+|+++++++++++.++++++++.+.++|++++.++++++++.|+||||++++| ++.++++|.++|
T Consensus 222 ~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I-----~~~al~~L~~~~ 296 (515)
T 3iyg_E 222 EDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGF-----DDEANHLLLQND 296 (515)
T ss_pred CCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCC-----CHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 591 I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
|++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|.++ +.|||+|||+|+.+++|
T Consensus 297 I~~v~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-~~~tI~lrG~te~~l~E 375 (515)
T 3iyg_E 297 LPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-RAVTIFIRGGNKMIIEE 375 (515)
T ss_pred CEEEeccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC-ceEEEEEeCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999997 899999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
++|+++||++++|+++++|++|||||++|++++.+|+ +++.+.++++
T Consensus 376 ~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~ 422 (515)
T 3iyg_E 376 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVS---------------------------------QEADKCPTLE 422 (515)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHH---------------------------------HHhccCCcHH
Confidence 9999999999999999999999999999999999999 7777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETV 827 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a 827 (841)
|+++++|++||+.||++|++|||+|+.+++.+|++.|.. +++++|||+.+|++.||++.|||||+.||+++|++|+|+|
T Consensus 423 q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a 502 (515)
T 3iyg_E 423 QYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMV 502 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999975 4568999999999999999999999999999999999999
Q ss_pred HHHHchhhhhcC
Q psy8873 828 RSILKIDDIVNT 839 (841)
Q Consensus 828 ~~iL~iD~iI~~ 839 (841)
++|||||+||++
T Consensus 503 ~~iL~iD~ii~~ 514 (515)
T 3iyg_E 503 RMILKIDDIRKP 514 (515)
T ss_pred HHHHhHHHhhcC
Confidence 999999999975
No 12
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=1.6e-97 Score=860.97 Aligned_cols=446 Identities=36% Similarity=0.597 Sum_probs=426.1
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++| + .+++.|.+
T Consensus 76 P~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~-~~~~~l~~ 153 (545)
T 1a6d_A 76 PTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-S-TDDATLRK 153 (545)
T ss_dssp HHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-C-CCHHHHHH
T ss_pred hHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999999999 6 68899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n 512 (841)
+|+|+++||+...|.++|++|+++|+.+++++. ....+|+++|+|++++|++++||++++|++|+++|.+.+||+.++|
T Consensus 154 va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien 233 (545)
T 1a6d_A 154 IALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKN 233 (545)
T ss_dssp HHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEE
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecC
Confidence 999999999999999999999999999997532 1135888999999999999999999999999999944499999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcE
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~ 592 (841)
|||++++++|++++++++.++.++++++++.+.++|++++++++++|++.|++|||++++| ++.+++||.++||+
T Consensus 234 ~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I-----~~~al~~L~~~~I~ 308 (545)
T 1a6d_A 234 AKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAKEGIY 308 (545)
T ss_dssp EEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB-----CHHHHHHHHHHTCE
T ss_pred CEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc-----cHHHHHHHHHCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHH
Q psy8873 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672 (841)
Q Consensus 593 ~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~ 672 (841)
+|+++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|+.+++|.+|+
T Consensus 309 av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~kr~ 387 (545)
T 1a6d_A 309 AVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSILIRGGTDHVVSEVERA 387 (545)
T ss_dssp EECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCS-SCEEEEECCSSSTTHHHHHHH
T ss_pred EeccCCHHHHHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHH
Q psy8873 673 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCF 752 (841)
Q Consensus 673 i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 752 (841)
++||++++|+++++|++|||||++|++++.+|+ +++.+.++++|+++
T Consensus 388 l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~q~~i 434 (545)
T 1a6d_A 388 LNDAIRVVAITKEDGKFLWGGGAVEAELAMRLA---------------------------------KYANSVGGREQLAI 434 (545)
T ss_dssp HHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHH---------------------------------HHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHH---------------------------------HHhhccCccHHHHH
Confidence 999999999999999999999999999999999 77777889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHc
Q psy8873 753 RAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832 (841)
Q Consensus 753 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~ 832 (841)
++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.+|+++|++|+|+|++|||
T Consensus 435 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~ 514 (545)
T 1a6d_A 435 EAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILR 514 (545)
T ss_dssp HHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccCccccchhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987777899999999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q psy8873 833 IDDIVNTL 840 (841)
Q Consensus 833 iD~iI~~~ 840 (841)
||++|...
T Consensus 515 id~iI~~~ 522 (545)
T 1a6d_A 515 IDDVIASK 522 (545)
T ss_dssp CCEEC---
T ss_pred HHHHHhcc
Confidence 99999763
No 13
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2e-97 Score=855.12 Aligned_cols=442 Identities=28% Similarity=0.449 Sum_probs=424.3
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIK 433 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ 433 (841)
|..+++++.+++||.++||||||+++||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++. +++.|.+
T Consensus 64 p~akll~~~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~~L~~ 142 (517)
T 3iyg_Z 64 PTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLID 142 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCC-CHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999999998875 7889999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~n 512 (841)
+|+|+++||+.+.|.++|+++++||+..+.+. ...+|+++|+|++++||+..||++++|++|++++ ++ +||+.++|
T Consensus 143 va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~--~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p-~m~~~ien 219 (517)
T 3iyg_Z 143 VARTSLRTKVHAELADVLTEAVVDSILAIKKQ--DEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHP-DMKKRVED 219 (517)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhheeccC--CCcCChhHheeeeecCCCccccceEeeEEEeccCCCC-CccccccC
Confidence 99999999999999999999999999998652 3468999999999999999999999999999999 55 89999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------EEEecCCcccccccHHHH
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN---------VLLVQKSILRDAISDLAI 583 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~---------lvi~~~~I~~~~l~~~~~ 583 (841)
|+|++++++|++++++++.++.++++++++.+.++|++++...+++|...+++ |||++++| +++++
T Consensus 220 ~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I-----~d~al 294 (517)
T 3iyg_Z 220 AYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGI-----DPFSL 294 (517)
T ss_pred CeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccC-----CHHHH
Confidence 99999999999999999999999999999999999999999999999998876 58889999 99999
Q ss_pred HHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCC-ceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 584 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH-LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 584 ~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
+||.++||++++++++++|+|||++|||+++++++++++++ +|+|+ |++.++|+++|++|++|+++ +.|||+|||+|
T Consensus 295 ~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~-~~~TI~lrG~t 372 (517)
T 3iyg_Z 295 DALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP-RSVTLLIKGPN 372 (517)
T ss_pred HHHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc-hhheeeecCCc
Confidence 99999999999999999999999999999999999999999 99999 99999999999999999987 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhc
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYAD 742 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (841)
+.+++|.||+++||++++|+++++|++|||||++|++++.+|+ +++.
T Consensus 373 ~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~ 419 (517)
T 3iyg_Z 373 KHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALV---------------------------------KYKP 419 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHH---------------------------------HHhc
Confidence 9999999999999999999999999999999999999999999 7777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHH
Q psy8873 743 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITL 822 (841)
Q Consensus 743 ~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~ 822 (841)
+.++++|+++++||+||+.+|++||+|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++
T Consensus 420 ~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~ 499 (517)
T 3iyg_Z 420 SVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCCcccchhhccCeecHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998878889999999999999999999999999999999
Q ss_pred HHHHHHHHHchhhhhcC
Q psy8873 823 STETVRSILKIDDIVNT 839 (841)
Q Consensus 823 A~e~a~~iL~iD~iI~~ 839 (841)
|+|+|+||||||+||++
T Consensus 500 A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 500 CTVIATNILLVDEIMRA 516 (517)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999975
No 14
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=1.6e-96 Score=847.77 Aligned_cols=434 Identities=30% Similarity=0.496 Sum_probs=416.0
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCcc---chHHHHHHhhhh
Q psy8873 362 LSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLA---DRENLIKSAATS 438 (841)
Q Consensus 362 ~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~---~~~~l~~ia~t~ 438 (841)
.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++.. +++.|.++|+|+
T Consensus 74 ~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~ts 153 (513)
T 3iyg_B 74 MSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTT 153 (513)
T ss_pred HHHHhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhh
Confidence 44556778999999999999999999999999999999999999999999999999999998732 578999999999
Q ss_pred ccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecceEEEE
Q psy8873 439 LNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLI 518 (841)
Q Consensus 439 l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~killl 518 (841)
+++|+.+.|.++|++|+++|+.++++ .+|+++|+|+++.||+..||++++|++|+++|.+ .||+.++||||+++
T Consensus 154 lssK~~~~~~~~i~~livdAv~~V~~-----~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~-~m~~~~en~kIll~ 227 (513)
T 3iyg_B 154 LSSKLLTHHKDHFTKLAVEAVLRLKG-----SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV-NQPKRIENAKILIA 227 (513)
T ss_pred hcccccccchHHHHHHHHHHHHHhcc-----cCCcCeEEEEEeCCCCccceeEEeeEEEeccccC-CCceeecCceEEEE
Confidence 99999999999999999999999974 3788899999999999999999999999999943 29999999999999
Q ss_pred EeecCCCccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecC
Q psy8873 519 QFCISPPKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597 (841)
Q Consensus 519 ~~~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v 597 (841)
+++|++++++ ++.++.++++++++++.+.|++++.+++++|++.|++|||++++| ++.+++||.++||++++++
T Consensus 228 ~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I-----~~~al~~L~~~~I~av~~~ 302 (513)
T 3iyg_B 228 NTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLI-----YNYPEQLFGAAGVMAIEHA 302 (513)
T ss_pred cCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCc-----cHHHHHHHHHcCceEEecC
Confidence 9999999999 999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHHHHHH
Q psy8873 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDAL 677 (841)
Q Consensus 598 ~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 677 (841)
++.+|+|||++|||++++++++++++++|+|+.|+++.+|+++|++|++|+++ +.|||+|||+|+.+++|.+|+++||+
T Consensus 303 ~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~t~~~l~E~kr~l~DAl 381 (513)
T 3iyg_B 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG-EACTIVLRGATQQILDEAERSLHDAL 381 (513)
T ss_pred CHHHHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCC-ceEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886 89999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHH
Q psy8873 678 CVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQ 757 (841)
Q Consensus 678 ~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 757 (841)
+++|++++++++|||||++|++++.+|+ +++.+.++++|+++++|++
T Consensus 382 ~~~r~av~~~~iVpGGGa~e~~~~~~L~---------------------------------~~~~~~~g~~q~~i~~~a~ 428 (513)
T 3iyg_B 382 CVLAQTVKDSRTVYGGGCSEMLMAHAVT---------------------------------QLASRTPGKEAVAMESYAK 428 (513)
T ss_pred HHHHHHHhCCcEEeCCcHHHHHHHHHHH---------------------------------HHhhccCcHHHHHHHHHHH
Confidence 9999999998999999999999999999 7777889999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhh
Q psy8873 758 ALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837 (841)
Q Consensus 758 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI 837 (841)
||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|
T Consensus 429 ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii 508 (513)
T 3iyg_B 429 ALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNII 508 (513)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy8873 838 NTL 840 (841)
Q Consensus 838 ~~~ 840 (841)
+++
T Consensus 509 ~~~ 511 (513)
T 3iyg_B 509 KAA 511 (513)
T ss_pred hcC
Confidence 864
No 15
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.9e-96 Score=847.97 Aligned_cols=442 Identities=27% Similarity=0.474 Sum_probs=420.3
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccc--cCCccchHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMST--PITLADRENLIK 433 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~--~~~~~~~~~l~~ 433 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++ +.+..+++.|.+
T Consensus 67 Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~ 146 (512)
T 3iyg_Q 67 AKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSS 146 (512)
T ss_pred HHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHH
Confidence 457788999999999999999999999999999999999999999999999999999999999854 334448899999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCceeecc
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKA 513 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~~~n~ 513 (841)
+|+|+++||+.+ +.++|++|+++|+.+++++ ++.+|+++|+|.+.+||++.||++++|++|+++|. +||+.++|+
T Consensus 147 va~tsl~sK~~~-~~~~i~~livdAv~~V~~~--~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~--~~~~~~~n~ 221 (512)
T 3iyg_Q 147 LLHTSVMSKQYG-NEVFLAKLIAQACVSIFPD--SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETE--GDVTSVKDA 221 (512)
T ss_pred HHHHHhCCCCcc-chHHHHHHHHHHHHHHhcc--CCcccHhHeeEeeccCCCcccceEEeeEEEecCcC--CCCcccccC
Confidence 999999999754 7899999999999999863 34689999999999999999999999999999984 389999999
Q ss_pred eEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEE
Q psy8873 514 KIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593 (841)
Q Consensus 514 killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~ 593 (841)
||++++++|++.+++.+.++.++++++++++.+.|++++.++++++++.|++|||++++| ++++++||.++||++
T Consensus 222 kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I-----~~la~~~l~k~~I~a 296 (512)
T 3iyg_Q 222 KIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANKYNIML 296 (512)
T ss_pred ceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCc-----cHHHHHHHHHCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHHHHHHH
Q psy8873 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSL 673 (841)
Q Consensus 594 v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i 673 (841)
++++++.+|+|||++|||++++++++++++++|+|++|++.++|++++++|++|+..+++|||+|||+|+.+++|.+|++
T Consensus 297 v~~~~~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i 376 (512)
T 3iyg_Q 297 VRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAV 376 (512)
T ss_pred EEeCCHHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986569999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHH
Q psy8873 674 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR 753 (841)
Q Consensus 674 ~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 753 (841)
+||++++|+++++|++|||||++|++++.+|+ +++.+.++++|++++
T Consensus 377 ~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i~ 423 (512)
T 3iyg_Q 377 DDGVNTFKVLTRDKRLVPGGGATEIELAKQIT---------------------------------SYGETCPGLEQYAIK 423 (512)
T ss_pred HHHHHHHHHHHhCCCEecCCcHHHHHHHHHHH---------------------------------HHhccCCcHHHHHHH
Confidence 99999999999999999999999999999999 777788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCC--ccccccccCcccchHHHHHHHHHHHHHHHHHH
Q psy8873 754 AFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSIL 831 (841)
Q Consensus 754 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL 831 (841)
+|++||+.||++|++|||+|+.+++.+|++.|..+++++|||+.+| ++.||++.|||||+.||+++|++|+|+|++||
T Consensus 424 ~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL 503 (512)
T 3iyg_Q 424 KFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVL 503 (512)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888999999965 99999999999999999999999999999999
Q ss_pred chhhhhcCC
Q psy8873 832 KIDDIVNTL 840 (841)
Q Consensus 832 ~iD~iI~~~ 840 (841)
|||+||+++
T Consensus 504 ~id~ii~~k 512 (512)
T 3iyg_Q 504 RVDQIIMAK 512 (512)
T ss_pred hHhHheecC
Confidence 999999875
No 16
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=1.5e-96 Score=854.76 Aligned_cols=447 Identities=35% Similarity=0.587 Sum_probs=422.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc----hH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD----RE 429 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~----~~ 429 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+ ++
T Consensus 99 P~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e 178 (562)
T 3p9d_E 99 EIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRD 178 (562)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999887532 27
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCce
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKR 509 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~ 509 (841)
.|.++|+|+++||+.+.|.++|+++++||+..+.+. ..+.+|+++|+|++++||+++||++++|++|+++|.+.+||+.
T Consensus 179 ~L~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~-~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~ 257 (562)
T 3p9d_E 179 FLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDK-DRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKC 257 (562)
T ss_dssp HHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTT-TCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHheeeccc-ccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcc
Confidence 899999999999999999999999999999999653 2357899999999999999999999999999999943499999
Q ss_pred e------ecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHH
Q psy8873 510 V------EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAI 583 (841)
Q Consensus 510 ~------~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~ 583 (841)
+ +|+||++++|+|++.+.++++++.++++++++.+.++|++++.+++++|++.|++|||++++| ++.++
T Consensus 258 ~~~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I-----~~~Al 332 (562)
T 3p9d_E 258 VLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF-----DDEAN 332 (562)
T ss_dssp ----TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSC-----CSHHH
T ss_pred cccccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCC-----CHHHH
Confidence 9 899999999999999999989999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecC--eeEEEEEccCCCCceEEEEEeCC
Q psy8873 584 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGS 661 (841)
Q Consensus 584 ~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~ 661 (841)
++|.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+ +++++|++|.++ +.|||+|||+
T Consensus 333 ~~L~~~~I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~ 411 (562)
T 3p9d_E 333 HLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGS 411 (562)
T ss_dssp HHHHTTTCCCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC-SCCEEEEECT
T ss_pred HHHHHCCCEEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC-CeEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999985 899999999987 8999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhh
Q psy8873 662 NKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYA 741 (841)
Q Consensus 662 t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (841)
|+.+++|.||+++||++++|+++++|++|||||++|++++.+|+ +++
T Consensus 412 te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~ 458 (562)
T 3p9d_E 412 NKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVS---------------------------------EEA 458 (562)
T ss_dssp TTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHH---------------------------------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHH---------------------------------HHh
Confidence 99999999999999999999999999999999999999999999 777
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-CCCceeEEccCCccccccccCcccchHHHHHHH
Q psy8873 742 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAITNILEENVVQPLLVSTSAI 820 (841)
Q Consensus 742 ~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l 820 (841)
.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.. ++.++|||+.+|++.||++.|||||+.||+++|
T Consensus 459 ~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al 538 (562)
T 3p9d_E 459 DKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQI 538 (562)
T ss_dssp HTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcHHHHHHHH
Confidence 7888999999999999999999999999999999999999999975 456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhhhhcCC
Q psy8873 821 TLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 821 ~~A~e~a~~iL~iD~iI~~~ 840 (841)
++|+|+|++|||||+||++.
T Consensus 539 ~~A~e~a~~iL~iD~ii~~~ 558 (562)
T 3p9d_E 539 LLATQLCRMILKIDNVIISG 558 (562)
T ss_dssp HHHHHHHHHHHTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999863
No 17
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=3.5e-97 Score=857.99 Aligned_cols=445 Identities=31% Similarity=0.505 Sum_probs=425.7
Q ss_pred HhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccc---hH
Q psy8873 353 LKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLAD---RE 429 (841)
Q Consensus 353 l~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~---~~ 429 (841)
||..+++++.+++||+++||||||++|||++||+++++++.+|+||+.|++||++|++.++++|+++++|++..+ ++
T Consensus 77 hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~ 156 (550)
T 3p9d_G 77 HPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRE 156 (550)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC------
T ss_pred CHHHHHHHHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhHH
Confidence 556778999999999999999999999999999999999999999999999999999999999999999987555 78
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC--CCC
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN--VNG 506 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~--~~m 506 (841)
.|.++|+|+++||+.+.|.++|++|++||+.++++ ..+|+++|.|++++||+++||++++|++|+++| ++ .+|
T Consensus 157 ~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~----~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~ 232 (550)
T 3p9d_G 157 LLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDR----NDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQ 232 (550)
T ss_dssp CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCS----SSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCS
T ss_pred HHHHHHHHhccCccccccHhHHHHHHHHHHHHhCc----cccCchheeEEEecCCCccceeEEeeEEEeccccccccccC
Confidence 99999999999999999999999999999999963 358899999999999999999999999999999 54 379
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
|++++||+|++++++|++++++++.++.++++++++++.+.|++++.+++++|++.|++|||++++| ++++++||
T Consensus 233 ~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I-----~dla~~~L 307 (550)
T 3p9d_G 233 PKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI-----GDLATQFF 307 (550)
T ss_dssp CSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCC-----CHHHHHTT
T ss_pred cccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCc-----cHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHH
Q psy8873 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVL 666 (841)
Q Consensus 587 ~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l 666 (841)
.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++++++|++|++|+++ ++|||+|||+|+.++
T Consensus 308 ~~~gI~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~-~~~tI~lrG~te~~l 386 (550)
T 3p9d_G 308 ADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA-KTCTLLLRGGAEQVI 386 (550)
T ss_dssp GGGTCEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTC-CCCCCCBCSSSHHHH
T ss_pred HHcCCccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCC-ceeEEEEeCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCC
Q psy8873 667 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSG 746 (841)
Q Consensus 667 ~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (841)
+|.||+++||++++|+++++|++|||||++|++++.+|+ +++.+.++
T Consensus 387 ~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g 433 (550)
T 3p9d_G 387 AEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLR---------------------------------DYSKTIAG 433 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHH---------------------------------HHHHTCCS
T ss_pred HHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHH---------------------------------HHhhcCCh
Confidence 999999999999999999999999999999999999999 77778899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHH
Q psy8873 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826 (841)
Q Consensus 747 ~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~ 826 (841)
++|+++++|++||+.||++|++|||+|+.+++.+|++.|..++.++|||+.+|++.||++.|||||+.||+++|++|+|+
T Consensus 434 ~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~ 513 (550)
T 3p9d_G 434 KQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEA 513 (550)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred HHHHHchhhhhcCC
Q psy8873 827 VRSILKIDDIVNTL 840 (841)
Q Consensus 827 a~~iL~iD~iI~~~ 840 (841)
|++|||||++|+..
T Consensus 514 a~~iL~id~ii~~~ 527 (550)
T 3p9d_G 514 TNLILSVDETITNK 527 (550)
T ss_dssp HHHHHTEEEEECCC
T ss_pred HHHHHhHHHHhhCC
Confidence 99999999999864
No 18
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=4e-96 Score=849.73 Aligned_cols=443 Identities=28% Similarity=0.485 Sum_probs=416.7
Q ss_pred HHhhhhccccccCCCCchhHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHhh
Q psy8873 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKL-LHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAA 436 (841)
Q Consensus 358 ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~l-l~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia~ 436 (841)
++++.+++||.++||||||++|||++||+++.++ +.+|+||+.|++||++|++.++++|+++++|++..+++.|.++|+
T Consensus 77 ll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~L~~vA~ 156 (590)
T 3p9d_C 77 SMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQ 156 (590)
T ss_dssp THHHHTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTHHHHHHHT
T ss_pred HHHHHHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHH
Confidence 5567888899999999999999999999999999 999999999999999999999999999999988767899999999
Q ss_pred hhccCcchhhhhhHHHHHHHHHHhhhcCCCCCC-------ccccc-ceEEEEccCCccccceeEEeEEEecCC-CCCCCC
Q psy8873 437 TSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDT-------NVDLK-DIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP 507 (841)
Q Consensus 437 t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~-------~~d~~-~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~ 507 (841)
|++++|+.+.|.++|++|+++|+.+++++...+ .+|++ +|+|++++||++.||++++|++|++++ ++ .||
T Consensus 157 tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~-~m~ 235 (590)
T 3p9d_C 157 ASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP-KMS 235 (590)
T ss_dssp TTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCT-TSC
T ss_pred HHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCC-CCc
Confidence 999999999999999999999999998642111 35554 799999999999999999999999999 65 899
Q ss_pred ceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHH
Q psy8873 508 KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 587 (841)
Q Consensus 508 ~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~ 587 (841)
+.++||||++++++|+++++++++++.++++++++++.+.|++++++++++|++.|++|||++++| ++++++||.
T Consensus 236 ~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I-----~d~Al~~L~ 310 (590)
T 3p9d_C 236 RHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGV-----SDLAQHYLL 310 (590)
T ss_dssp SCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCC-----CTHHHHHHH
T ss_pred ceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----CHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEEEccCCCCce-------------
Q psy8873 588 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRT------------- 653 (841)
Q Consensus 588 ~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~------------- 653 (841)
++||++|+++++.+|+|||++|||+++++++++++++||+ |+.|++..++++++++|++|.++ +.
T Consensus 311 k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~-~~~~~~~~~~~~~~~ 389 (590)
T 3p9d_C 311 KGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEP-GSGSGWSHPQFEKGS 389 (590)
T ss_dssp HTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC--------------------
T ss_pred hccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCc-ccccccccccccccc
Confidence 9999999999999999999999999999999999999999 99999999999999999998764 34
Q ss_pred -------------------------------------------EEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Q psy8873 654 -------------------------------------------LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 690 (841)
Q Consensus 654 -------------------------------------------~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vv 690 (841)
|||+|||+|+.+++|.+|+++||++++|+++++|++|
T Consensus 390 ~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iV 469 (590)
T 3p9d_C 390 GKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLS 469 (590)
T ss_dssp --------------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred chhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 9999999999999999999999999999999998899
Q ss_pred eCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhc
Q psy8873 691 AGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770 (841)
Q Consensus 691 pGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~Na 770 (841)
||||++|++++.+|+ +++.+.++++|+++++|++||+.||++||+||
T Consensus 470 pGGGa~e~~~s~~L~---------------------------------~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na 516 (590)
T 3p9d_C 470 PGGGATEMAVSVKLA---------------------------------EKAKQLEGIQQWPYQAVADAMECIPRTLIQNA 516 (590)
T ss_dssp CTTTHHHHHHHHHHH---------------------------------HHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTT
T ss_pred eCccHHHHHHHHHHH---------------------------------HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999 77778899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 771 GLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 771 G~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
|+|+.+++.+|++.|..+++++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+++
T Consensus 517 G~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~ 586 (590)
T 3p9d_C 517 GGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGV 586 (590)
T ss_dssp CSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998888889999999999999999999999999999999999999999999999865
No 19
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=1.6e-96 Score=853.89 Aligned_cols=444 Identities=26% Similarity=0.411 Sum_probs=419.7
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCc--cchHHHHH
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITL--ADRENLIK 433 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~--~~~~~l~~ 433 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++. .+++.|.+
T Consensus 73 akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~ 152 (546)
T 3p9d_F 73 AVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQ 152 (546)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHH
Confidence 3566788999999999999999999999999999999999999999999999999999999999998753 47889999
Q ss_pred HhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CCCCCCceeec
Q psy8873 434 SAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-ANVNGPKRVEK 512 (841)
Q Consensus 434 ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~~~m~~~~~n 512 (841)
+|+|++++|+.+.|.++|+++++||+..+.+. +...+|+++|+|++++||+..||++++|++|++++ ++ .||+.++|
T Consensus 153 vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~-~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~-~m~~~~en 230 (546)
T 3p9d_F 153 VARSSLLTKVDADLTEVLTPIVTDAVLSVYDA-QADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHP-DMPTRVKN 230 (546)
T ss_dssp HHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHH-HHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSS-SSCSSBCS
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHhheEeecC-CCCcccchheEEEEecCCCccccEEEeeEEEecccccc-cCcceecC
Confidence 99999999999999999999999999998632 23468999999999999999999999999999999 55 89999999
Q ss_pred ceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcC---------C-cEEEecCCcccccccHHH
Q psy8873 513 AKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAG---------C-NVLLVQKSILRDAISDLA 582 (841)
Q Consensus 513 ~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g---------~-~lvi~~~~I~~~~l~~~~ 582 (841)
|+|++++|+|++++++++.++.++++++++.+.+.|++++.+.+++|...+ . +|||++++| ++++
T Consensus 231 ~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I-----~~~A 305 (546)
T 3p9d_F 231 AYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI-----DPMS 305 (546)
T ss_dssp CCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCC-----CHHH
T ss_pred ceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcC-----cHHH
Confidence 999999999999999999999999999999999999999999999998764 2 389999999 9999
Q ss_pred HHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCC
Q psy8873 583 IHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662 (841)
Q Consensus 583 ~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t 662 (841)
++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +.|||+|||+|
T Consensus 306 l~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~t 384 (546)
T 3p9d_F 306 LDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP-KSCTILIKGST 384 (546)
T ss_dssp HHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-SCEEEECCCSC
T ss_pred HHHHHHCCCeeEecCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-ceEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhh---
Q psy8873 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTK--- 739 (841)
Q Consensus 663 ~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 739 (841)
+.+++|++|+++||++++|+++++|++|||||++|++++.+|+ +
T Consensus 385 e~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~---------------------------------~~~~ 431 (546)
T 3p9d_F 385 HYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLR---------------------------------SANM 431 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHH---------------------------------HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHH---------------------------------hhhh
Confidence 9999999999999999999999999999999999999999999 5
Q ss_pred hhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc-----CCCceeEEccCCccccccccCcccchH
Q psy8873 740 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-----GETTTGINVRKGAITNILEENVVQPLL 814 (841)
Q Consensus 740 ~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-----~~~~~Gid~~~g~~~d~~~~gI~D~~~ 814 (841)
|+.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.. ++.++|||+.+|++.||++.|||||+.
T Consensus 432 ~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~ 511 (546)
T 3p9d_F 432 NKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYR 511 (546)
T ss_dssp TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGGGTCEEEHH
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHhccCEecHH
Confidence 577889999999999999999999999999999999999999999873 456799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 815 VSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 815 vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
||+++|++|+|+|++|||||+||++.
T Consensus 512 vk~~al~~A~~~a~~iL~iD~ii~~~ 537 (546)
T 3p9d_F 512 VLRNAITGATGIASNLLLCDELLRAG 537 (546)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864
No 20
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=1.1e-96 Score=857.07 Aligned_cols=446 Identities=27% Similarity=0.456 Sum_probs=412.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccC--CccchHHH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPI--TLADRENL 431 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~--~~~~~~~l 431 (841)
|..+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|++.++++|++++.++ +..+++.|
T Consensus 80 P~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~~~l 159 (568)
T 3p9d_H 80 PAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNEL 159 (568)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCTTHHH
T ss_pred HHHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHH
Confidence 5567888999999999999999999999999999999999999999999999999999999999999875 33478999
Q ss_pred HHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCC----CCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCC
Q psy8873 432 IKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNP----QRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGP 507 (841)
Q Consensus 432 ~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~----~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~ 507 (841)
.++|+|+++||+.+.+ ++|++|+++|+.+++++ .+...||+++|+|++++||+++||++++|++|++++. +||
T Consensus 160 ~~va~tsl~sK~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~--~m~ 236 (568)
T 3p9d_H 160 LKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE--GHV 236 (568)
T ss_dssp HHHHHHHHTTTSTTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS--SGG
T ss_pred HHHHHHHhhccCcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc--CCc
Confidence 9999999999998888 99999999999999763 1223689999999999999999999999999999973 789
Q ss_pred ceee---cceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHH
Q psy8873 508 KRVE---KAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIH 584 (841)
Q Consensus 508 ~~~~---n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~ 584 (841)
+.++ ||||++++|+|+++++++++++.++++++++.+.++|++++++++++|++.|++|||++++| ++++++
T Consensus 237 ~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I-----~~~al~ 311 (568)
T 3p9d_H 237 KSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGV-----GELALH 311 (568)
T ss_dssp GSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCC-----CHHHHH
T ss_pred EEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCc-----ChHHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCC-CCceEEEEEeCCCH
Q psy8873 585 FLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNK 663 (841)
Q Consensus 585 ~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~ 663 (841)
||.++||++|+++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. .++.|||+|||+|+
T Consensus 312 ~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~ 391 (568)
T 3p9d_H 312 YLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQ 391 (568)
T ss_dssp HHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCH
T ss_pred HHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999983 34999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhh
Q psy8873 664 LVLDEAARSLHDALCVVRCLVK--QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYA 741 (841)
Q Consensus 664 ~~l~e~~r~i~dal~~~~~~l~--~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (841)
.+++|.||+++||++++|++++ ++++|||||++|++|+.+|+ +++
T Consensus 392 ~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~---------------------------------~~a 438 (568)
T 3p9d_H 392 NNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRIT---------------------------------KYG 438 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHH---------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHH---------------------------------HHh
Confidence 9999999999999999999999 99999999999999999999 778
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc--------CCCceeEEccCCc---cccccccCcc
Q psy8873 742 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ--------GETTTGINVRKGA---ITNILEENVV 810 (841)
Q Consensus 742 ~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~--------~~~~~Gid~~~g~---~~d~~~~gI~ 810 (841)
.+.++++|+++++||+||+.||++||+|||+|+.+++.+|++.|.. +++++|||+.+|+ +.||++.|||
T Consensus 439 ~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~ 518 (568)
T 3p9d_H 439 ERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIY 518 (568)
T ss_dssp HTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccChHHccCE
Confidence 8889999999999999999999999999999999999999999865 5668999999997 9999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 811 QPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 811 D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
||+.||+++|++|+|+|++|||||+||+++
T Consensus 519 dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 548 (568)
T 3p9d_H 519 DMLATKKFAINVATEAATTVLSIDQIIMAK 548 (568)
T ss_dssp HHHHHHHHHHHCCEECBCCC----------
T ss_pred EcHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 999999999999999999999999999864
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=2.7e-96 Score=849.57 Aligned_cols=442 Identities=31% Similarity=0.506 Sum_probs=419.9
Q ss_pred hhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHhhccccCCccc---hH
Q psy8873 354 KIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHK-GIHPTTISDAFQKAAAKCVEILTEMSTPITLAD---RE 429 (841)
Q Consensus 354 ~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~-gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~---~~ 429 (841)
|..+++++.+++||.++||||||++|||++||+++++++.+ |+||+.|++||++|.+.++++|++++++++..+ ++
T Consensus 72 P~Akll~e~a~~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~ 151 (527)
T 3p9d_B 72 PAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFRE 151 (527)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHH
Confidence 56778999999999999999999999999999999999999 999999999999999999999999999987422 78
Q ss_pred HHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCCCCCCCCce
Q psy8873 430 NLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKR 509 (841)
Q Consensus 430 ~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~~~~~m~~~ 509 (841)
.|.++|+|+++||+.+.|.++|++|+++|+.+++++ + |+++|+|+++.||++.||++++|++|+++|.+.+ |++
T Consensus 152 ~l~~vA~tSl~sK~~~~~~~~i~~li~dAv~~V~~~---~--~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~-p~~ 225 (527)
T 3p9d_B 152 DLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGS---T--NLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKR 225 (527)
T ss_dssp HHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHTTCTT---C--CTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC-CSC
T ss_pred HHHHHHHhccccCcccchHHHHHHHHHHHHHHhccc---C--CcceEEEEEcCCCCccccEEEEeEEEecccCCCC-Cee
Confidence 999999999999999999999999999999999752 2 6678999999999999999999999999993324 889
Q ss_pred eecceEEEEEeecCCCccc-CCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 510 VEKAKIGLIQFCISPPKTD-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 510 ~~n~killl~~~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
++||||++++|+|++++++ ++.++.++++++++.+.++|++++++.+++|++.|++|||++++| +++++++|.+
T Consensus 226 ~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I-----~~~al~~L~~ 300 (527)
T 3p9d_B 226 IENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLI-----YDYPEQLFTD 300 (527)
T ss_dssp CSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCC-----TTTHHHHHHH
T ss_pred eecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHH
Confidence 9999999999999999999 799999999999999999999999999999999999999999999 9999999999
Q ss_pred cCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCceEEEEEeCCCHHHHHH
Q psy8873 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE 668 (841)
Q Consensus 589 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e 668 (841)
++|++++++++.+|+|+|++|||++++++++++++++|+|+.|++..+++++|++|++|+++ ++|||+|||+|+.+++|
T Consensus 301 ~~i~av~~~~~~dle~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrg~te~~l~E 379 (527)
T 3p9d_B 301 LGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG-EACTIVLRGATDQTLDE 379 (527)
T ss_dssp TCBCCCCCCHHHHHHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCS-CCEECBCCTTCTTHHHH
T ss_pred CCCEEEecCCHHHHHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCC-CEEEEEEcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChh
Q psy8873 669 AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGID 748 (841)
Q Consensus 669 ~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (841)
.+|+++||++++|+++++|++|||||++|++++.+|+ +++.+.++++
T Consensus 380 ~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~---------------------------------~~~~~~~g~e 426 (527)
T 3p9d_B 380 AERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD---------------------------------TEAQNIDGKK 426 (527)
T ss_dssp HHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHH---------------------------------HHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHH---------------------------------HHHhccCcHH
Confidence 9999999999999999999999999999999999999 6777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHH
Q psy8873 749 AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828 (841)
Q Consensus 749 ~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~ 828 (841)
|+++++|++||+.||++|++|||+|+.+++.+|++.|..+++++|||+.+|++.||++.|||||+.||+++|++|+|+|+
T Consensus 427 q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~ 506 (527)
T 3p9d_B 427 SLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAE 506 (527)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchHhccCEEcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877889999999999999999999999999999999999999
Q ss_pred HHHchhhhhcCC
Q psy8873 829 SILKIDDIVNTL 840 (841)
Q Consensus 829 ~iL~iD~iI~~~ 840 (841)
+|||||++|+++
T Consensus 507 ~iL~id~ii~~~ 518 (527)
T 3p9d_B 507 VLLRVDNIIRAR 518 (527)
T ss_dssp HHHHCCEEEEEC
T ss_pred HHHhHHHHHhcC
Confidence 999999999753
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=8.1e-88 Score=773.14 Aligned_cols=466 Identities=35% Similarity=0.599 Sum_probs=384.8
Q ss_pred eeeechhhhhhHHHHHHHHhhhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy8873 335 LLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414 (841)
Q Consensus 335 ~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~ 414 (841)
..++.+..+.+-+. ...||..+++++.+++||.++||||||+++||++||+++++++++|+||+.|++||++|++.+++
T Consensus 9 ~~iTnDG~tIlk~i-~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~ 87 (500)
T 3aq1_B 9 IVITNDGATILKEM-DIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCRE 87 (500)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEECcHHHHHHhC-cCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 46777888888777 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCccchHHHHHHhhhhccCcchhhhhhHHHHHHHHHHhhhcCCC-CCCccc-ccceEEEEccCCccccceeE
Q psy8873 415 ILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQ-RDTNVD-LKDIKVIRKLGGTVEDTELV 492 (841)
Q Consensus 415 ~L~~~s~~~~~~~~~~l~~ia~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~-~~~~~d-~~~I~I~k~~Gg~~~dS~li 492 (841)
+|+++++|++..+++.|.++|+|+++||+...|.++|++|+++|+.+++++. ....+| +++|+|++++||+++||+++
T Consensus 88 ~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv 167 (500)
T 3aq1_B 88 ILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELI 167 (500)
T ss_dssp HHHHHCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEE
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCCccceEEE
Confidence 9999999987667999999999999999999999999999999999997532 122477 77899999999999999999
Q ss_pred EeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCC
Q psy8873 493 DGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS 572 (841)
Q Consensus 493 ~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 572 (841)
+|++|++++.+.+||+.++||||++++++|++++++++.++.++++++++.+.++|+++++++++++++.|++|||++++
T Consensus 168 ~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~ 247 (500)
T 3aq1_B 168 DGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG 247 (500)
T ss_dssp SEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSC
T ss_pred eeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCC
Confidence 99999999944499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCCCc
Q psy8873 573 ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 652 (841)
Q Consensus 573 I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~ 652 (841)
| ++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.++ +
T Consensus 248 I-----~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~ 321 (500)
T 3aq1_B 248 I-----DDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-K 321 (500)
T ss_dssp B-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTC-C
T ss_pred c-----CHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCCCC-c
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999986 9
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHHHhhhcccccccchhhhhhhhccCCCCchhh
Q psy8873 653 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIE 732 (841)
Q Consensus 653 ~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (841)
.|||+|||+|+.+++|.+|+++||++++|+++++|++|||||++|++++.+|+
T Consensus 322 ~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~--------------------------- 374 (500)
T 3aq1_B 322 AVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLS--------------------------- 374 (500)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHH---------------------------
T ss_pred eEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCceeEEccCCccccccccCcccc
Q psy8873 733 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQP 812 (841)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~ 812 (841)
+++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+..++|||+.+|++.||++.|||||
T Consensus 375 ------~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp 448 (500)
T 3aq1_B 375 ------EYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEP 448 (500)
T ss_dssp ------HHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEE
T ss_pred ------HHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCC
Confidence 77777889999999999999999999999999999999999999999877778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 813 LLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 813 ~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
+.+|+++|++|+|+|++|||||++|+..
T Consensus 449 ~~vk~~al~~A~e~a~~iL~iD~iI~~~ 476 (500)
T 3aq1_B 449 LRIKTQAINAAMEATVMILRIDDVVASK 476 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999763
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=9.9e-84 Score=742.50 Aligned_cols=399 Identities=22% Similarity=0.314 Sum_probs=363.6
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKS 434 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~i 434 (841)
..+++++.+++||.++||||||++|||++||+++++++++|+||+.|++||++|++.++++|+++++|++ +++.|.++
T Consensus 69 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~l~~v 146 (543)
T 1we3_A 69 GAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE--DRKAIEEV 146 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--SHHHHHHH
T ss_pred HHHHHHHHHHhhheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHh
Confidence 4567889999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCC
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNG 506 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m 506 (841)
|+++++ + +++++++++|+.++++ ++ .|+|+ +|+++++| ++++|++|+++| ++ +.|
T Consensus 147 A~iS~~-~------~~i~~li~dAv~~V~~---~g-----~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m 209 (543)
T 1we3_A 147 ATISAN-D------PEVGKLIADAMEKVGK---EG-----IITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETM 209 (543)
T ss_dssp HHHHHT-C------HHHHHHHHHHHHTTCT---TS-----EEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTT
T ss_pred hhhhcC-C------HHHHHHHHHHHHHhCc---CC-----cEEEe--cCCccccceEEEcCEEEecCccccccccCcccC
Confidence 999987 3 7999999999999974 22 36666 69999988 999999999999 53 357
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
++.++||+|+++++++ +++++ +.++++++.+.|++|||++++| ++.++++|
T Consensus 210 ~~~~en~~Ill~d~~I-------------s~~~~-----------l~~~le~i~~~g~~lvii~~~I-----~~~Al~~L 260 (543)
T 1we3_A 210 EAVLEDAFILIVEKKV-------------SNVRE-----------LLPILEQVAQTGKPLLIIAEDV-----EGEALATL 260 (543)
T ss_dssp BCCEEEEEEEEESSCB-------------CCHHH-----------HHHHHHHHHTTTCCEEEEESCB-----CHHHHHHH
T ss_pred ceeecCceEEEECCCc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCc-----cHHHHHHH
Confidence 8889999999999865 44533 5678999999999999999999 77777777
Q ss_pred Hh------cCcEEEe-----cCChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCC-
Q psy8873 587 DK------IKVLVVK-----DIEREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN- 649 (841)
Q Consensus 587 ~~------~~I~~v~-----~v~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~- 649 (841)
.. .+|++|+ ++++++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|.+
T Consensus 261 ~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 337 (543)
T 1we3_A 261 VVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKK 337 (543)
T ss_dssp HHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCH
T ss_pred HHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCH
Confidence 64 6889998 678899999999999999996 89999999999999986 5789999999875
Q ss_pred ---------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy8873 650 ---------------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 650 ---------------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~ 696 (841)
++++|||+|||+|+.+++|.+|+++||++++|+++++| +|||||++
T Consensus 338 ~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~ 416 (543)
T 1we3_A 338 EDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVT 416 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHH
T ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHH
Confidence 24799999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 697 E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
|++++.+|+ +++.+.++++|+++++|++||+.||++|++|||+|+.+
T Consensus 417 e~~~s~~L~---------------------------------~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~ 463 (543)
T 1we3_A 417 LLRAISAVE---------------------------------ELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSV 463 (543)
T ss_dssp HHHHHHHHH---------------------------------HHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH---------------------------------HHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999 66666788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
++.+|++.| ++.++|||..+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+
T Consensus 464 vv~~l~~~h--~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (543)
T 1we3_A 464 IVQQILAET--KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEK 525 (543)
T ss_dssp HHHHHHHCC--SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHHhc--CCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999877 35679999999999999999999999999999999999999999999999753
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=2.1e-83 Score=738.36 Aligned_cols=397 Identities=22% Similarity=0.328 Sum_probs=362.3
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKS 434 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~i 434 (841)
..+++++.+++||+++||||||++|||++||+++++++.+|+||+.|++||++|++.++++|+++++|++ +++.|.++
T Consensus 69 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~e~l~~v 146 (547)
T 1kp8_A 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCS--DSKAIAQV 146 (547)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCC--SHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCC--CHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCC
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNG 506 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m 506 (841)
|+++++++ ++|++++++|+.++++ ++ .|+|+ +|+++++| ++++|++|+++| ++ +.|
T Consensus 147 A~iS~~~~------~~i~~liadAv~~V~~---dg-----~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m 210 (547)
T 1kp8_A 147 GTISANSD------ETVGKLIAEAMDKVGK---EG-----VITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETG 210 (547)
T ss_dssp HHHHTTSC------HHHHHHHHHHHHHHCT---TS-----EEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTT
T ss_pred HHHhccch------hHHHHHHHHHHHHhCc---CC-----cEEEE--eCCccccccEEEecEEEecCccccccccCcccC
Confidence 99999866 8999999999999974 22 36666 79999998 999999999999 54 347
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
++.++||+|+++++++ +++++ +.++++++.+.|+||||++++| ++.++++|
T Consensus 211 ~~~lenp~Ill~d~~I-------------s~~~~-----------l~~~le~i~~~g~~lvIi~~~I-----~~~Al~~L 261 (547)
T 1kp8_A 211 AVELESPFILLADKKI-------------SNIRE-----------MLPVLEAVAKAGKPLLIIAEDV-----EGEALATL 261 (547)
T ss_dssp BEEEESCEEECEESEE-------------CCGGG-----------THHHHHHHHGGGCCEEEEESEE-----CHHHHHHH
T ss_pred ceEecCceEEEEcCcC-------------CCHHH-----------HHHHHHHHHhcCCCEEEECCCc-----CHHHHHHH
Confidence 8889999999999975 34433 4578999999999999999999 88888888
Q ss_pred Hh------cCcEEEe-----cCChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 587 DK------IKVLVVK-----DIEREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 587 ~~------~~I~~v~-----~v~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
.. .+|++|+ ++++++|+|||++|||+++++ ++++++++||+|+.|++ +.+++++|++|.++
T Consensus 262 ~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 338 (547)
T 1kp8_A 262 VVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEE 338 (547)
T ss_dssp HHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCH
T ss_pred HhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCH
Confidence 85 6789998 778999999999999999996 99999999999999986 57899999998753
Q ss_pred ----------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy8873 651 ----------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 651 ----------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~ 696 (841)
+++|||+|||+|+.+++|.+|+++||++++|+++++| +|||||++
T Consensus 339 ~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~ 417 (547)
T 1kp8_A 339 AAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVA 417 (547)
T ss_dssp HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHH
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHH
Confidence 3789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 697 E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
|++++.+|+ +++. .++++|+++++|++||+.||++|++|||+|+.+
T Consensus 418 e~~~s~~L~---------------------------------~~~~-~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~ 463 (547)
T 1kp8_A 418 LIRVASKLA---------------------------------DLRG-QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSV 463 (547)
T ss_dssp HHHHHHHTT---------------------------------TCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH---------------------------------HHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999998 5554 678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
++.+|++. +.++|||+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+
T Consensus 464 vv~~l~~~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 523 (547)
T 1kp8_A 464 VANTVKGG----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL 523 (547)
T ss_dssp HHHHHHHS----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHhc----CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecC
Confidence 99999863 4679999999999999999999999999999999999999999999999753
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=3.2e-84 Score=745.91 Aligned_cols=398 Identities=20% Similarity=0.299 Sum_probs=334.7
Q ss_pred hhhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHH
Q psy8873 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKS 434 (841)
Q Consensus 355 i~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~i 434 (841)
..+++++.+++||+++||||||++|||++||+++++++.+|+||+.|++||++|++.++++|+++++|++ +++.|.++
T Consensus 70 ~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~e~l~~v 147 (545)
T 1iok_A 70 GAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVN--DSSEVAQV 147 (545)
T ss_dssp HHHHHHHHHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCC--STTTTTHH
T ss_pred HHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999987 77899999
Q ss_pred hhhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccc-eeEEeEEEecCC-CC------CCC
Q psy8873 435 AATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDT-ELVDGLVFTQKS-AN------VNG 506 (841)
Q Consensus 435 a~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS-~li~G~v~~~~~-~~------~~m 506 (841)
|+++++++ ++|++++++|+.++++ ++ .|+|+ +|+++++| ++++|++|+++| ++ +.|
T Consensus 148 a~iS~~~~------~~i~~li~dAv~~V~~---~g-----~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m 211 (545)
T 1iok_A 148 GTISANGE------SFIGQQIAEAMQRVGN---EG-----VITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKM 211 (545)
T ss_dssp HHHTTTTC------HHHHHHHHHHHHHHCT---TS-----CCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSS
T ss_pred HHhhcCCc------hhHHHHHHHHHHHhcc---CC-----eEEEE--eCCccccceEEEecEEEecCccccccccCcccC
Confidence 99999865 8999999999999974 23 35555 69999998 999999999999 53 358
Q ss_pred CceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHH
Q psy8873 507 PKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586 (841)
Q Consensus 507 ~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l 586 (841)
++.++||+|++++++++. +++ +.++++++.+.|++|||++++| ++.++++|
T Consensus 212 ~~~~en~~Ill~d~~I~~-------------~~~-----------l~~~le~i~~~g~~lvIi~~~I-----~~~Al~~L 262 (545)
T 1iok_A 212 IAELEDAYILLHEKKLSS-------------LQP-----------MVPLLESVIQSQKPLLIVAEDV-----EGEALATL 262 (545)
T ss_dssp CEEEEEEEEEECSSCBCC-------------CCC----------------------CCCCEEEESCB-----C-------
T ss_pred ceeecCCeEEEEcCCcCC-------------HHH-----------HHHHHHHHHhcCCCEEEECCCc-----CHHHHHHH
Confidence 888999999999998642 222 4577899999999999999999 77777776
Q ss_pred Hh------cCcEEEe-----cCChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEEEecCeeEEEEEccCC-
Q psy8873 587 DK------IKVLVVK-----DIEREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN- 649 (841)
Q Consensus 587 ~~------~~I~~v~-----~v~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~- 649 (841)
.. .+|++|+ ++++++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|.+
T Consensus 263 ~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 339 (545)
T 1iok_A 263 VVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEK 339 (545)
T ss_dssp ----------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCH
T ss_pred HHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCH
Confidence 65 6789988 778999999999999999996 99999999999999986 5689999999874
Q ss_pred ---------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHH
Q psy8873 650 ---------------------------------PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696 (841)
Q Consensus 650 ---------------------------------~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~ 696 (841)
++++|||+|||+|+.+++|.+|+++||++++|+++++| +|||||++
T Consensus 340 ~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~ 418 (545)
T 1iok_A 340 AEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVA 418 (545)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHH
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHH
Confidence 24789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q psy8873 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776 (841)
Q Consensus 697 E~~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~ 776 (841)
|++++.+|+ +++. .++++|+++++|++||+.||++|++|||+|+.+
T Consensus 419 e~~~s~~L~---------------------------------~~~~-~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~ 464 (545)
T 1iok_A 419 LVQGAKVLE---------------------------------GLSG-ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAV 464 (545)
T ss_dssp HHHHGGGGG---------------------------------SCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH---------------------------------HHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999998 5555 678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 777 ~~~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
++.+|++.| ++++|||..+|++.||++.|||||+.||+++|++|+|+|++||+||++|..+
T Consensus 465 vv~~l~~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 525 (545)
T 1iok_A 465 VAGKVRESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEK 525 (545)
T ss_dssp HHHHHHSCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHhhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 999999755 4679999999999999999999999999999999999999999999999763
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=7.5e-83 Score=731.36 Aligned_cols=395 Identities=22% Similarity=0.295 Sum_probs=344.0
Q ss_pred hhHHhhhhccccccCCCCchhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHh
Q psy8873 356 DDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSA 435 (841)
Q Consensus 356 ~~ii~~~ak~qd~~~GDGTtt~viLa~~Ll~~a~~ll~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~l~~ia 435 (841)
.+++++.+++||.++||||||++|||++||+++.+++.+|+||+.|++||++|.+.++++|+++++|++ +++.|.++|
T Consensus 70 Akll~e~a~~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~--~~e~L~~vA 147 (546)
T 3rtk_A 70 AELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVE--TKEQIAATA 147 (546)
T ss_dssp HHHHHHHHTSCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--SHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--ChHHHHhHe
Confidence 457889999999999999999999999999999999999999999999999999999999999999988 788999999
Q ss_pred hhhccCcchhhhhhHHHHHHHHHHhhhcCCCCCCcccccceEEEEccCCccccceeEEeEEEecCC-CC------CCCCc
Q psy8873 436 ATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKS-AN------VNGPK 508 (841)
Q Consensus 436 ~t~l~sk~~~~~~~~ls~lv~~A~~~v~~~~~~~~~d~~~I~I~k~~Gg~~~dS~li~G~v~~~~~-~~------~~m~~ 508 (841)
++++++ +++++++++|+.++++ ++ .|+|++.. +...||++++|++|+++| ++ +.||+
T Consensus 148 ~iS~~~-------~~i~~liadAv~~V~~---dg-----vI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~ 211 (546)
T 3rtk_A 148 AISAGD-------QSIGDLIAEAMDKVGN---EG-----VITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEA 211 (546)
T ss_dssp HHHHTC-------HHHHHHHHHHHHHSCT---TS-----EEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBE
T ss_pred EEeCCc-------hHHHHHHHHHHHHhcc---CC-----ceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCee
Confidence 999883 6899999999999975 23 47777644 455799999999999998 44 36899
Q ss_pred eeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCcccccccHHHHHHHHh
Q psy8873 509 RVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588 (841)
Q Consensus 509 ~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~ 588 (841)
.++||+|+++++.+ +++++ +.++++++.+.|+||||++++| ++.++++|..
T Consensus 212 ~len~kIll~d~kI-------------s~~~~-----------l~~~le~I~~~g~~lvIi~~~I-----~~~Al~~L~~ 262 (546)
T 3rtk_A 212 VLEDPYILLVSSKV-------------STVKD-----------LLPLLEKVIGAGKPLLIIAEDV-----EGEALSTLVV 262 (546)
T ss_dssp EEESCEEEEBSSEE-------------CCSTT-----------THHHHHHHHTTTCCEEEEESEE-----CHHHHHHHHH
T ss_pred EecccEEEEECCcc-------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCC-----CHHHHHHHHH
Confidence 99999999999864 44433 4567899999999999999999 7888877774
Q ss_pred ------cCcEEEecC-----ChhHHHHHHHHcCCcccc-----cCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC--
Q psy8873 589 ------IKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP-- 650 (841)
Q Consensus 589 ------~~I~~v~~v-----~~~~L~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-- 650 (841)
.++++|+.+ ++++|+|||++|||++++ +++++++++||+|+.|+ ++.+++++|++|.++
T Consensus 263 n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~ 339 (546)
T 3rtk_A 263 NKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDA 339 (546)
T ss_dssp HHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHH
T ss_pred hCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHH
Confidence 457888755 488999999999999999 58999999999999998 588999999998753
Q ss_pred --------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHH
Q psy8873 651 --------------------------------GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 698 (841)
Q Consensus 651 --------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~l~~~~vvpGGG~~E~ 698 (841)
+++|||+|||+|+.+++|++|+++||++++|+++++| +|||||++|+
T Consensus 340 i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~ 418 (546)
T 3rtk_A 340 IAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLL 418 (546)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHH
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHH
Confidence 3589999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhhhcccccccchhhhhhhhccCCCCchhhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q psy8873 699 ELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTV 778 (841)
Q Consensus 699 ~ls~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~d~~~~~ 778 (841)
+++.+|+ +++ .++++|+++++|++||+.||++|++|||+|+.+++
T Consensus 419 ~~s~~L~---------------------------------~~~--~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv 463 (546)
T 3rtk_A 419 QAAPTLD---------------------------------ELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVA 463 (546)
T ss_dssp TTGGGST---------------------------------TSC--CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHH---------------------------------Hhc--cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999998 555 68899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEccCCccccccccCcccchHHHHHHHHHHHHHHHHHHchhhhhcCC
Q psy8873 779 TELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIVNTL 840 (841)
Q Consensus 779 ~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gI~D~~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 840 (841)
.+|++. ...+|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|+.+
T Consensus 464 ~~l~~~----~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~ 521 (546)
T 3rtk_A 464 EKVRNL----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADK 521 (546)
T ss_dssp HHHHHS----CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHhh----cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999873 2348999999999999999999999999999999999999999999999864
No 27
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=4.4e-63 Score=568.13 Aligned_cols=272 Identities=33% Similarity=0.606 Sum_probs=240.7
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEe
Q psy8873 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPI 169 (841)
Q Consensus 90 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i 169 (841)
+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+++
T Consensus 210 i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii 284 (500)
T 3aq1_B 210 ITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG-----IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATII 284 (500)
T ss_dssp ---------------CHHHHHHHHHHTTCCSEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCB
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCC-----cCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEe
Confidence 56677888999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCC
Q psy8873 170 ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGG 249 (841)
Q Consensus 170 ~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgG 249 (841)
++++++++++||+|++|++.++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++||++|||||
T Consensus 285 s~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGG 363 (500)
T 3aq1_B 285 QDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-KAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363 (500)
T ss_dssp SCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTC-CCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTT
T ss_pred cccccCCHhHCCCceEEEEEEecCeEEEEEECCCCC-ceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCc
Confidence 999999999999999999999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccc
Q psy8873 250 APEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 250 a~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~ 329 (841)
++|++++.+|++++.+.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.||++.
T Consensus 364 a~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~ 443 (500)
T 3aq1_B 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWEN 443 (500)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTT
T ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhc
Confidence 99999999999999889999999999999999999999999999999999999999998777789999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcccc
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD 367 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd 367 (841)
|||||+.||++++++|+++|+++|++|++|...+....
T Consensus 444 gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~ 481 (500)
T 3aq1_B 444 DVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQ 481 (500)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 99999999999999999999999999999988765443
No 28
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.9e-57 Score=522.03 Aligned_cols=276 Identities=73% Similarity=1.140 Sum_probs=264.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++++++++|++++.+++++|.+.|+||||++++|..+.|+++|++||.++||++++++++++|+|||++|
T Consensus 240 ~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~t 319 (518)
T 3iyg_D 240 DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTI 319 (518)
T ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999996555445599999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCC-ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGN-SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~-~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
||+++++++++++++||+|++|++.++++ ++|++|+||++.+++|||+|||+|+.+++|+||++|||+|++|++++||+
T Consensus 320 Ga~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~ 399 (518)
T 3iyg_D 320 GTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRA 399 (518)
T ss_pred CCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 89999999987458999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~ 323 (841)
+|||||++|++++.+|++|+.+.++++|+++++|++||+.|||+||+|||+||.+++.+|++.|.+++.++|||+.+|.+
T Consensus 400 iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~ 479 (518)
T 3iyg_D 400 LIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGI 479 (518)
T ss_pred EeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998777789999999999
Q ss_pred ccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 324 ~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
.||++.|||||+.||++++++|+++|+++|++|++|+
T Consensus 480 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 516 (518)
T 3iyg_D 480 SNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 516 (518)
T ss_pred cchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEe
Confidence 9999999999999999999999999999999999985
No 29
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=6.2e-57 Score=520.52 Aligned_cols=271 Identities=27% Similarity=0.478 Sum_probs=261.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.++++++++.+.++|++++++++++|++.|+||||++++ |+++|+|||.++||++++++++++|+|||++|
T Consensus 243 ~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~-----I~d~al~~L~~~gI~av~~v~k~~leria~~t 317 (529)
T 3iyg_A 243 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGG-----IDDMCLKYFVEAGAMAVRRVLKRDLKRIAKAS 317 (529)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC-----CCHHHHHHHHHcCCceeccCCHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccC------CCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHH
Q psy8873 165 NTRPIASLDHFL------PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238 (841)
Q Consensus 165 Ga~~i~~l~~l~------~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~ 238 (841)
||++++++++++ +++||+|+.|+++++|+++|++|+||+.+ ++|||+|||+|+.+|+|+||++|||++++|++
T Consensus 318 Ga~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~ 396 (529)
T 3iyg_A 318 GATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKAR-TSASVILRGANDFMCDEMERSLHDALCVVKRV 396 (529)
T ss_pred CCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCC-ceEEEEECCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987654 67899999999999999999999999986 79999999999999999999999999999999
Q ss_pred HhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCC-------
Q psy8873 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE------- 311 (841)
Q Consensus 239 ~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~------- 311 (841)
++||++|||||++||+++.+|++|+.+.+|++|+++++|++|||+||++||+|||+|+.+++.+|++.|.+++
T Consensus 397 v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~ 476 (529)
T 3iyg_A 397 LESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKN 476 (529)
T ss_pred hhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred -cceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 312 -TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 312 -~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
.++|+|+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|..
T Consensus 477 ~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 527 (529)
T 3iyg_A 477 LKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 527 (529)
T ss_pred CceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 67999999999999999999999999999999999999999999999864
No 30
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=1.7e-56 Score=515.12 Aligned_cols=273 Identities=26% Similarity=0.467 Sum_probs=264.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++.+++++|++++++++++|++.|+||||++++ |+++|+|||.++||++++++++++|+|||++|
T Consensus 240 ~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~-----I~~~al~~L~~~~I~av~~~~~~~le~ia~~t 314 (513)
T 3iyg_B 240 GSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQL-----IYNYPEQLFGAAGVMAIEHADFVGVERLALVT 314 (513)
T ss_pred CCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCC-----ccHHHHHHHHHcCceEEecCCHHHHHHHHHHh
Confidence 3456889999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|+++.+|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++|+++
T Consensus 315 Ga~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~i 393 (513)
T 3iyg_B 315 GGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG-EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRT 393 (513)
T ss_pred CCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCC-ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 99999999999999999999999999999999999999874 79999999999999999999999999999999999889
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++|++++.+|++++.+.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.
T Consensus 394 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~ 473 (513)
T 3iyg_B 394 VYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIG 473 (513)
T ss_pred EeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988778899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELS 363 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~a 363 (841)
||++.|||||+.||++++++|+++|+++|++|++|+..+
T Consensus 474 d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 512 (513)
T 3iyg_B 474 DMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 512 (513)
T ss_pred chHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999997643
No 31
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.5e-56 Score=515.14 Aligned_cols=270 Identities=27% Similarity=0.486 Sum_probs=262.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++.+++++|.+.|+||||++++ |++++++||.++||++++++++++|+|||++|
T Consensus 243 ~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~-----I~dla~~~l~~~gI~~v~~~~k~~leria~~t 317 (515)
T 3iyg_H 243 NAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLP-----IGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 317 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCc-----ccHHHHHHHHHcCCcccccccHHHHHHHHHHh
Confidence 3466899999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|++.++|+++|++|+||+++ .+|||+|||+|+.+++|+||++|||||++|++++|+++
T Consensus 318 Ga~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~i 396 (515)
T 3iyg_H 318 GGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA-KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSV 396 (515)
T ss_pred CCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCC-ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 99999999999999999999999999999999999999986 79999999999999999999999999999999999889
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~ 324 (841)
|||||++|++++.+|++++++.++++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.
T Consensus 397 VpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~ 476 (515)
T 3iyg_H 397 VAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIA 476 (515)
T ss_pred ecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999987777899999999999
Q ss_pred cccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 325 d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
||++.|||||+.||++++++|+++|+++|++|++|.
T Consensus 477 dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~ 512 (515)
T 3iyg_H 477 DNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 512 (515)
T ss_pred ccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999985
No 32
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2e-56 Score=514.73 Aligned_cols=270 Identities=30% Similarity=0.516 Sum_probs=261.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++++++++|.+.|++|||++++ |+++|+|||.++||++++++++++|+|||++|
T Consensus 241 ~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~-----I~~~al~~L~~~~I~av~~~~k~~leria~~t 315 (515)
T 3iyg_G 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANITAIRRVRKTDNNRIARAC 315 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCc-----cCHHHHHHHHHCCceeeccCCHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 165 NTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
||+++++++++++++||+ |+.|++.++|+++|++|+||+++ .+|||+|||+|+.+|+|+||++||||+++|++++|++
T Consensus 316 Ga~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~-~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ 394 (515)
T 3iyg_G 316 GARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQ 394 (515)
T ss_pred CCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCC-CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999999 99999999999999999999986 7999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCC-CcceeeecCCCc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQG-ETTTGINVRKGA 322 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~-~~~~G~d~~~~~ 322 (841)
+|||||++||+++.+|++++++.+|++|+++++|++|||+||||||+|||+||.+++.+|++.|.++ +.++|+|+.+|.
T Consensus 395 ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~ 474 (515)
T 3iyg_G 395 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGT 474 (515)
T ss_pred EEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999754 457999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+.||++.|||||+.||++++++|+++|+++|++|++|.
T Consensus 475 ~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 512 (515)
T 3iyg_G 475 LVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 512 (515)
T ss_pred ccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999985
No 33
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=1.5e-56 Score=518.15 Aligned_cols=344 Identities=36% Similarity=0.600 Sum_probs=313.9
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..+|.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 24 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 103 (553)
T 3ko1_A 24 SRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADG 103 (553)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHHHTCSSSSSTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHHhhCCcccccCC
Confidence 667899999999999999999999999999999999999999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 104 TTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~sK~~~~~~~~i~~ 183 (553)
T 3ko1_A 104 TKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIAD 183 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHTTSSCCTTHHHHHH
T ss_pred ceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhhHHhhhhHHHHHHH
Confidence
Q ss_pred -----------------------------------h----------hcccccc-------cccc-------------ccc
Q psy8873 73 -----------------------------------Q----------MNVIHPA-------AKMM-------------DHK 87 (841)
Q Consensus 73 -----------------------------------~----------~~~~~p~-------ak~~-------------~~~ 87 (841)
+ -+..||. ++++ +++
T Consensus 184 livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~~~ 263 (553)
T 3ko1_A 184 IVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAE 263 (553)
T ss_dssp HHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEecCcccccCcccCce
Confidence 1 1123442 1211 345
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+
T Consensus 264 v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~-----I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ 338 (553)
T 3ko1_A 264 IRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKG-----IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGR 338 (553)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSC-----BCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccC-----hHHHHHHHHHhcchhhhhhhhhhhHHHHHHhhCCe
Confidence 6889999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
++++++++++++||+|++|++.++|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||++|++++||++|||
T Consensus 339 ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~-~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpG 417 (553)
T 3ko1_A 339 VVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAG 417 (553)
T ss_dssp EESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSS-SCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEET
T ss_pred eecccccCChhhcchHHHHHHhhcCcceEEEeccCCCC-ceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecC
Confidence 99999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCC-cceeeecCCCccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE-TTTGINVRKGAITNI 326 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~-~~~G~d~~~~~~~d~ 326 (841)
||++|++++.+|++|+.+.+|++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+++ .++|||+.+|.+.||
T Consensus 418 GGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~ 497 (553)
T 3ko1_A 418 GGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDM 497 (553)
T ss_dssp TTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEES
T ss_pred CceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHH
Confidence 9999999999999999899999999999999999999999999999999999999999998765 689999999999999
Q ss_pred cccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccccc
Q psy8873 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDI 368 (841)
Q Consensus 327 ~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~qd~ 368 (841)
++.|||||+.||+++|++|+++|+++|++|++|...+...+.
T Consensus 498 ~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~ 539 (553)
T 3ko1_A 498 WQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539 (553)
T ss_dssp GGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC-------
T ss_pred HHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccCC
Confidence 999999999999999999999999999999999876654433
No 34
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=1.2e-57 Score=525.80 Aligned_cols=276 Identities=60% Similarity=0.976 Sum_probs=267.0
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++++++++|++++.+++++|.+.|+||||++++|.+++++++|+|||.++||++++++++++|+|||++|
T Consensus 249 ~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia~~t 328 (528)
T 3p9d_D 249 ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGL 328 (528)
T ss_dssp EEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEccc--CCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcC
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ--NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQR 242 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~--~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~ 242 (841)
||+++++++++++++||+|++|++.++++++|++|+||+ +.+++|||+|||+|+.+++|+||++|||+|++|++++||
T Consensus 329 Ga~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~ 408 (528)
T 3p9d_D 329 GCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKER 408 (528)
T ss_dssp TCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSS
T ss_pred CCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998 424799999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCc
Q psy8873 243 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA 322 (841)
Q Consensus 243 ~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~ 322 (841)
++|||||++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|||+.+|.
T Consensus 409 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~ 488 (528)
T 3p9d_D 409 GLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSG 488 (528)
T ss_dssp CEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSS
T ss_pred CccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+.||++.|||||+.||+++|++|+++|+++|++|++|+
T Consensus 489 ~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 526 (528)
T 3p9d_D 489 TTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526 (528)
T ss_dssp CCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCB
T ss_pred ccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHhee
Confidence 99999999999999999999999999999999999874
No 35
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.2e-56 Score=512.64 Aligned_cols=269 Identities=25% Similarity=0.421 Sum_probs=260.0
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------eEEEecchhhhhHHHHHHHHHhhhheeeeccccch
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN---------VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERE 155 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~---------lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~ 155 (841)
+.++.+++++++++++++|++++.+.+++|...+++ |||++++ |+++|+|||.++||++++++++.
T Consensus 237 ~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~-----I~d~al~~L~~~gI~~v~~v~~~ 311 (517)
T 3iyg_Z 237 NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKG-----IDPFSLDALAKEGIIALRRAKRR 311 (517)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEeccc-----CCHHHHHHHHHCCCEEEEecCHH
Confidence 678899999999999999999999999999998877 4777787 89999999999999999999999
Q ss_pred hHHHHHHHhCCeEeecccccCCCC-CcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHH
Q psy8873 156 DIEFVCKTLNTRPIASLDHFLPEH-LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV 234 (841)
Q Consensus 156 ~L~~ia~~tGa~~i~~l~~l~~~~-lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~ 234 (841)
+|+|||++|||+++++++++++++ ||+|+ |++.++|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||+
T Consensus 312 ~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~kr~l~DAl~~ 389 (517)
T 3iyg_Z 312 NMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNP-RSVTLLIKGPNKHTLTQIKDAIRDGLRA 389 (517)
T ss_pred HHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCc-hhheeeecCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999 99999999999999999986 7999999999999999999999999999
Q ss_pred HHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcce
Q psy8873 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 314 (841)
Q Consensus 235 ~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~ 314 (841)
+|++++||++|||||++||+++.+|++|+.+.+|++|+++++|++||+++|||||+|||+|+.+++.+|++.|.+++.++
T Consensus 390 ~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~ 469 (517)
T 3iyg_Z 390 VKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLV 469 (517)
T ss_pred HHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777889
Q ss_pred eeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 315 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 315 G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.
T Consensus 470 G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~ 515 (517)
T 3iyg_Z 470 GVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515 (517)
T ss_pred EEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999985
No 36
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=8e-56 Score=509.88 Aligned_cols=271 Identities=28% Similarity=0.516 Sum_probs=262.2
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
+.++.+++++++.++.++|++++++++++|.+.|+|||+++++ |+++++|||.++||++++++++.+|+|||++|
T Consensus 238 k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~-----I~~la~~~l~k~~I~av~~~~~~dle~ia~~t 312 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGR-----VADMALHYANKYNIMLVRLNSKWDLRRLCKTV 312 (512)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCC-----ccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHh
Confidence 3566799999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
||+++++++++++++||+|++|++.++|++++++|++|++++++|||+|||+|+.+++|+||++|||||++|++++||++
T Consensus 313 Ga~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i 392 (512)
T 3iyg_Q 313 GATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRL 392 (512)
T ss_pred CCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999865689999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCC--c
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--A 322 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~--~ 322 (841)
|||||++|++++.+|++++.+.+|++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+| .
T Consensus 393 VpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~ 472 (512)
T 3iyg_Q 393 VPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPA 472 (512)
T ss_pred ecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999987778899999965 9
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~ 360 (841)
+.||++.|||||+.||++++++|+++|+++|++|++|+
T Consensus 473 ~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~ 510 (512)
T 3iyg_Q 473 VKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 510 (512)
T ss_pred ccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHhee
Confidence 99999999999999999999999999999999999985
No 37
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=7.6e-56 Score=512.37 Aligned_cols=340 Identities=36% Similarity=0.633 Sum_probs=317.4
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..+|.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 13 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 92 (543)
T 3ruv_A 13 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDG 92 (543)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred chhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHhhhCCC
Confidence 557799999999999999999999999999999999999999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 93 TTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~va~tsl~sK~~~~~~~~i~~ 172 (543)
T 3ruv_A 93 TTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAE 172 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHHHHTCGGGCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcccccchhHHHHHH
Confidence
Q ss_pred --------------------------------hh----------cccccc-------cccc-------------ccceee
Q psy8873 73 --------------------------------QM----------NVIHPA-------AKMM-------------DHKVVV 90 (841)
Q Consensus 73 --------------------------------~~----------~~~~p~-------ak~~-------------~~~~~i 90 (841)
+. +..||. ++++ ++++.+
T Consensus 173 livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~~k~e~~~~v~I 252 (543)
T 3ruv_A 173 IIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRI 252 (543)
T ss_dssp HHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSCCCCSSCCCEEE
T ss_pred HHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEcccccccccccCceeEe
Confidence 11 123442 1211 346789
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEee
Q psy8873 91 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIA 170 (841)
Q Consensus 91 ~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i~ 170 (841)
++++++++++++|++++++++++|++.|+||||++++ |+++|++||.++||++++++++++|+|||++|||++++
T Consensus 253 ss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~-----I~~~al~~L~~~gI~~v~~v~k~~le~ia~~tGa~iis 327 (543)
T 3ruv_A 253 TDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKG-----IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIA 327 (543)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCEES
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCC-----ccHHHHHHHHHcCcEEEeeCCHHHHHHHHHHhCCceec
Confidence 9999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCCh
Q psy8873 171 SLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 250 (841)
Q Consensus 171 ~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa 250 (841)
+++++++++||+|++|++.++|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||++|++++||++|||||+
T Consensus 328 ~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa 406 (543)
T 3ruv_A 328 AIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 406 (543)
T ss_dssp CGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTH
T ss_pred ccccCCHHHCCcccEEEEEEeCCceEEEEECCCCC-ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcH
Confidence 99999999999999999999999999999999986 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhcc-CCCcceeeecCCCcccccccc
Q psy8873 251 PEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 251 ~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~-~~~~~~G~d~~~~~~~d~~~~ 329 (841)
+|++++.+|++|+.+.++++|+++++|++||++|||+||+|||+|+.+++.+|++.|. +++.++|||+.+|.+.||++.
T Consensus 407 ~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~ 486 (543)
T 3ruv_A 407 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCEN 486 (543)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTT
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHc
Confidence 9999999999999999999999999999999999999999999999999999999997 666789999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
|||||+.||+++|++|+++|+++|++|++|...+.
T Consensus 487 gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~ 521 (543)
T 3ruv_A 487 GVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKL 521 (543)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC--
T ss_pred CCEecHHHHHHHHHHHHHHHHHHHhHHhheecCcc
Confidence 99999999999999999999999999999987654
No 38
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=3.4e-56 Score=516.39 Aligned_cols=345 Identities=31% Similarity=0.493 Sum_probs=319.5
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-----------------------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK----------------------- 72 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k----------------------- 72 (841)
..|+..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||||
T Consensus 15 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~ 94 (559)
T 3p9d_A 15 LGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREI 94 (559)
T ss_dssp SSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHHHHT
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999999999999999999999211
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 95 GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~~~~~~ 174 (559)
T 3p9d_A 95 GDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSD 174 (559)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHHHTTSSSGGGTTHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccchhH
Confidence
Q ss_pred -------------------------------------hh-------------cccccc---------cccc---------
Q psy8873 73 -------------------------------------QM-------------NVIHPA---------AKMM--------- 84 (841)
Q Consensus 73 -------------------------------------~~-------------~~~~p~---------ak~~--------- 84 (841)
.+ +..||. ++++
T Consensus 175 ~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~Le~~ 254 (559)
T 3p9d_A 175 FFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKA 254 (559)
T ss_dssp HHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCCSCC
T ss_pred HHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeeccCCceEEEEecccccc
Confidence 11 112331 1111
Q ss_pred ----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHH
Q psy8873 85 ----DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 160 (841)
Q Consensus 85 ----~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~i 160 (841)
+.++.++++++++.+.++|++++.+++++|++.|+||||++++ |+++|++||.++||++++++++++|+||
T Consensus 255 k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~i 329 (559)
T 3p9d_A 255 RMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKG-----IDDLCLKEFVEAKIMGVRRCKKEDLRRI 329 (559)
T ss_dssp CCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSC-----CCGGGTHHHHHTTCEEESSCCHHHHHHH
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCC-----CCHHHHHHHHHcCCceEccCCHHHHHHH
Confidence 3466788999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHHhCCeEeecc------cccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHH
Q psy8873 161 CKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV 234 (841)
Q Consensus 161 a~~tGa~~i~~l------~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~ 234 (841)
|++|||++++++ +++++++||+|++|+++++++++|++|+||+++ ++|||+|||+|+.+++|+||++|||||+
T Consensus 330 a~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrG~te~~l~E~kr~l~DAL~~ 408 (559)
T 3p9d_A 330 ARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKH-SSSSIILRGANDYSLDEMERSLHDSLSV 408 (559)
T ss_dssp HHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSS-CCCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCC-CEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998 789999999999999999999999999999975 7999999999999999999999999999
Q ss_pred HHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCc--
Q psy8873 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET-- 312 (841)
Q Consensus 235 ~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~-- 312 (841)
+|++++||++|||||++|++++.+|++++.+.++++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+++.
T Consensus 409 ~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~ 488 (559)
T 3p9d_A 409 VKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAK 488 (559)
T ss_dssp HHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976654
Q ss_pred ----------ceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 313 ----------TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 313 ----------~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
++|||+.+|.+.||++.|||||+.||+++|++|+++|+++|++|++|+..++.+
T Consensus 489 ~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~ 552 (559)
T 3p9d_A 489 PEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPP 552 (559)
T ss_dssp ----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCCC
T ss_pred ccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccc
Confidence 799999999999999999999999999999999999999999999998765544
No 39
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.7e-55 Score=507.59 Aligned_cols=338 Identities=38% Similarity=0.617 Sum_probs=315.1
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK------------------------- 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k------------------------- 72 (841)
++..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 4678999999999999999999999999999999999999999999999999111
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~~ 162 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQ 162 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchhHHHHH
Confidence
Q ss_pred ------------------------------------hhc----------ccccc-------cccc-------------cc
Q psy8873 73 ------------------------------------QMN----------VIHPA-------AKMM-------------DH 86 (841)
Q Consensus 73 ------------------------------------~~~----------~~~p~-------ak~~-------------~~ 86 (841)
+.+ ..||. +++. ++
T Consensus 163 l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~ 242 (515)
T 3iyg_E 163 MAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 242 (515)
T ss_pred HHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCccccccccccc
Confidence 221 23442 1211 25
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.++++++++++.++|++++.+++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||
T Consensus 243 ~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~-----I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa 317 (515)
T 3iyg_E 243 KLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWG-----FDDEANHLLLQNDLPAVRWVGGPEIELIAIATGG 317 (515)
T ss_pred eeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCC-----CCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCC
Confidence 67789999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRAL 244 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~v 244 (841)
+++++++++++++||+|++|+++++|+ +++++|+||+++ .+|||+|||+|+.+++|+||++||||+++|++++||++
T Consensus 318 ~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~-~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i 396 (515)
T 3iyg_E 318 RIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRV 396 (515)
T ss_pred EEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCC-ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999987 899999999986 79999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC-CCcceeeecCCCcc
Q psy8873 245 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGAI 323 (841)
Q Consensus 245 vpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~-~~~~~G~d~~~~~~ 323 (841)
|||||++|++++.+|++|+.+.+|++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+ ++.++|||+.+|.+
T Consensus 397 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~ 476 (515)
T 3iyg_E 397 VYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGT 476 (515)
T ss_pred CCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999975 45689999999999
Q ss_pred ccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 324 ~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
.||++.|||||+.||+++|++|+++|+++|++|++|+.
T Consensus 477 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 477 NDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred cchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 99999999999999999999999999999999999853
No 40
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=1.1e-55 Score=511.41 Aligned_cols=341 Identities=38% Similarity=0.649 Sum_probs=315.8
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 16 ~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 95 (545)
T 1a6d_A 16 QREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDG 95 (545)
T ss_dssp -CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTH
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHHhcCCEECCC
Confidence 678899999999999999999999999999999999999999999999999322
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 96 TTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~~~~~~~l~~va~tsl~sKi~~~~~~~i~~li 175 (545)
T 1a6d_A 96 TTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLV 175 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHTTTSSCCSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence
Q ss_pred -------------------------------------------hhcccccc-------cccc-------------cccee
Q psy8873 73 -------------------------------------------QMNVIHPA-------AKMM-------------DHKVV 89 (841)
Q Consensus 73 -------------------------------------------~~~~~~p~-------ak~~-------------~~~~~ 89 (841)
.-++.||. ++++ +.++.
T Consensus 176 vdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~ 255 (545)
T 1a6d_A 176 VKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQ 255 (545)
T ss_dssp HHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEEE
T ss_pred HHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccCCceEE
Confidence 11224442 1211 45778
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCeEe
Q psy8873 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPI 169 (841)
Q Consensus 90 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~~i 169 (841)
+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+++
T Consensus 256 i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii 330 (545)
T 1a6d_A 256 ISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIV 330 (545)
T ss_dssp ECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSC-----BCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEE
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCC-----ccHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeee
Confidence 99999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCC
Q psy8873 170 ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGG 249 (841)
Q Consensus 170 ~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgG 249 (841)
++++++++++||+|++|++.++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++||++|||||
T Consensus 331 s~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGG 409 (545)
T 1a6d_A 331 TDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGG 409 (545)
T ss_dssp SSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCS-SCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTT
T ss_pred cccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcC
Confidence 999999999999999999999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccccc
Q psy8873 250 APEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 329 (841)
Q Consensus 250 a~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~ 329 (841)
++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.||++.
T Consensus 410 a~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~ 489 (545)
T 1a6d_A 410 AVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAK 489 (545)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHH
T ss_pred HHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccCccccchhc
Confidence 99999999999999889999999999999999999999999999999999999999998777789999999999999999
Q ss_pred ccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 330 NVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 330 gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
|||||+.||++++++|+++|+++|++|++|...+..
T Consensus 490 gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 525 (545)
T 1a6d_A 490 GVVDPLRVKTHALESAVEVATMILRIDDVIASKKST 525 (545)
T ss_dssp TCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999886654
No 41
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=9.6e-56 Score=512.08 Aligned_cols=342 Identities=36% Similarity=0.627 Sum_probs=319.4
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK------------------------- 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k------------------------- 72 (841)
++..||.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 16 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 95 (548)
T 1q3q_A 16 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGD 95 (548)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSS
T ss_pred cceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHHhcCCEECC
Confidence 4678899999999999999999999999999999999999999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 96 GTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~ 175 (548)
T 1q3q_A 96 GTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLA 175 (548)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTTGGGHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhccccccchHHHH
Confidence
Q ss_pred ----------------------------------------------hhcccccc-------cccc-------------cc
Q psy8873 73 ----------------------------------------------QMNVIHPA-------AKMM-------------DH 86 (841)
Q Consensus 73 ----------------------------------------------~~~~~~p~-------ak~~-------------~~ 86 (841)
.-++.||. ++++ +.
T Consensus 176 ~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 255 (548)
T 1q3q_A 176 KLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 255 (548)
T ss_dssp HHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCC
T ss_pred HHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCc
Confidence 11223442 1211 45
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++.+++++++++++++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||
T Consensus 256 ~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa 330 (548)
T 1q3q_A 256 KINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGA 330 (548)
T ss_dssp CEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCC
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCC-----cCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCC
Confidence 77899999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy8873 167 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIA 246 (841)
Q Consensus 167 ~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvp 246 (841)
+++++++++++++||+|++|++.++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|++++||++||
T Consensus 331 ~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivp 409 (548)
T 1q3q_A 331 KIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLP 409 (548)
T ss_dssp CCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC-SSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred eEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-CeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 999999999999999999999999999999999999975 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccc
Q psy8873 247 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326 (841)
Q Consensus 247 GgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~ 326 (841)
|||++|++++.+|++++.+.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.||
T Consensus 410 GGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~ 489 (548)
T 1q3q_A 410 AGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADM 489 (548)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEET
T ss_pred CCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCCCccch
Confidence 99999999999999999889999999999999999999999999999999999999999997666689999999999999
Q ss_pred cccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 327 ~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
++.|||||+.||++++++|+++|+++|++|++|...+..
T Consensus 490 ~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~ 528 (548)
T 1q3q_A 490 LEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528 (548)
T ss_dssp TTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC--
T ss_pred hhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 999999999999999999999999999999999876544
No 42
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=1.3e-55 Score=510.94 Aligned_cols=340 Identities=37% Similarity=0.644 Sum_probs=312.8
Q ss_pred hhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh--------------------------
Q psy8873 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK-------------------------- 72 (841)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k-------------------------- 72 (841)
+..+|.+||.+|+.||+.||++|||||||+||||||++++|+|+|||||+||+|
T Consensus 15 ~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 94 (543)
T 1a6d_B 15 KRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDG 94 (543)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHHhcCCEECCC
Confidence 578899999999999999999999999999999999999999999999999332
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 95 TTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi~~~~~~~i~~ 174 (543)
T 1a6d_B 95 TTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAE 174 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSGGGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhccccccccHHHHHH
Confidence
Q ss_pred ---------------------------------------------hhcccccc-------cccc-------------ccc
Q psy8873 73 ---------------------------------------------QMNVIHPA-------AKMM-------------DHK 87 (841)
Q Consensus 73 ---------------------------------------------~~~~~~p~-------ak~~-------------~~~ 87 (841)
.-++.||. ++++ +.+
T Consensus 175 livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~ 254 (543)
T 1a6d_B 175 ISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTN 254 (543)
T ss_dssp HHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEE
T ss_pred HHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEecccccccccCCce
Confidence 11223442 1211 356
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.+++++++++++++|++++.+++++|.+.|+||||++++ |+++|++||.++||++++++++++|+|||++|||+
T Consensus 255 v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~-----I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~ 329 (543)
T 1a6d_B 255 LRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGAS 329 (543)
T ss_dssp ECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSC-----BCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCC-----cCHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCc
Confidence 7789999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
++++++++++++||+|+.|+++++|+++|++|+||+++ ++|||+|||+|+.+++|+||++|||++++|+++++|++|||
T Consensus 330 iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpG 408 (543)
T 1a6d_B 330 IVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAG 408 (543)
T ss_dssp EESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS-SCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEET
T ss_pred eecccccCCHHHCCCceEEEEEEecCceEEEEecCCCC-ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence 99999999999999999999999999999999999975 89999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~ 327 (841)
||++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++.|.+++.++|+|+.+|.+.||+
T Consensus 409 GGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~ 488 (543)
T 1a6d_B 409 GGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMV 488 (543)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETT
T ss_pred ccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCCcccchh
Confidence 99999999999999998899999999999999999999999999999999999999999987777899999999999999
Q ss_pred ccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 328 ~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
+.|||||+.||++++++|+++|+++|++|++|...+.
T Consensus 489 ~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~ 525 (543)
T 1a6d_B 489 KNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSS 525 (543)
T ss_dssp TTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC----
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999987654
No 43
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=3.6e-56 Score=514.50 Aligned_cols=342 Identities=29% Similarity=0.477 Sum_probs=318.1
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhccccccccccccc-CCCceEEeccHHHHHh------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQA-SNGEVTITNDGATILK------------------------ 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~-~~g~~~itnDg~ti~k------------------------ 72 (841)
++..||.+||.+|+.||+.||++|||||||+||||||++ ++|+|+|||||+||+|
T Consensus 10 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~qd~~~G 89 (527)
T 3p9d_B 10 VTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVG 89 (527)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHHhHhhhC
Confidence 477899999999999999999999999999999999999 8999999999999333
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 90 DGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~sK~~~~~ 169 (527)
T 3p9d_B 90 DGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQD 169 (527)
T ss_dssp SCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHTTSGGGGG
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccccCcccch
Confidence
Q ss_pred ---------------------------------------------hhcccccc------ccc--------------cccc
Q psy8873 73 ---------------------------------------------QMNVIHPA------AKM--------------MDHK 87 (841)
Q Consensus 73 ---------------------------------------------~~~~~~p~------ak~--------------~~~~ 87 (841)
.-+..||. +++ .+.+
T Consensus 170 ~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~~~~n~kIlll~~~le~~k~~~~~~~ 249 (527)
T 3p9d_B 170 KDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFGTK 249 (527)
T ss_dssp HHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSCCSCCSSCEEEEECSCSSCCCCSSCCCB
T ss_pred HHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCCCeeeecceEEEeccccccccccccCce
Confidence 11123331 111 2456
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 88 ~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.++++++++.+.++|++++++++++|.+.|+||||++++ |+++|++||.++||++++++++.+|+|+|++|||+
T Consensus 250 v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~-----I~~~al~~L~~~~i~av~~~~~~dle~ia~~tGa~ 324 (527)
T 3p9d_B 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQL-----IYDYPEQLFTDLGINSIEHADFEGVERLALVTGGE 324 (527)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCC-----CTTTHHHHHHHTCBCCCCCCHHHHHHHHHHHTCCC
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC-----CCHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCE
Confidence 6789999999999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred EeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccC
Q psy8873 168 PIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG 247 (841)
Q Consensus 168 ~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpG 247 (841)
++++++++++++||+|+.|++++++++++++|+||+.+ ++|||+|||+|+.+++|+||++|||||++|++++||++|||
T Consensus 325 iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~-~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpG 403 (527)
T 3p9d_B 325 VVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG-EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLG 403 (527)
T ss_dssp CCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCS-CCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEET
T ss_pred EecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCC-CEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 99999999999999999999999999999999999975 79999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccccc
Q psy8873 248 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327 (841)
Q Consensus 248 gGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~ 327 (841)
||++|++++.+|++++.+.+|++|+++++|++||+.||||||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.||+
T Consensus 404 GGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~ 483 (527)
T 3p9d_B 404 GGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMR 483 (527)
T ss_dssp TTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHH
T ss_pred CcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchH
Confidence 99999999999999998899999999999999999999999999999999999999999987777899999999999999
Q ss_pred ccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 328 ~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
+.|||||++||+++|++|+++|+++|++|++|...++.
T Consensus 484 ~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~ 521 (527)
T 3p9d_B 484 QLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRT 521 (527)
T ss_dssp HHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred hccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 99999999999999999999999999999999876654
No 44
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=1e-55 Score=511.39 Aligned_cols=275 Identities=30% Similarity=0.513 Sum_probs=265.0
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
+++.+++++++++++++|++++.+++++|++.|++||+++++ |++++++||.++||++++++++++|+|||++||
T Consensus 257 ~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~-----I~dla~~~L~~~gI~~v~~v~k~~lerIa~~tG 331 (550)
T 3p9d_G 257 AEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLP-----IGDLATQFFADRNIFCAGRVSADDMNRVIQAVG 331 (550)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSC-----CCHHHHHTTGGGTCEEEECCCTTHHHHHHHHTC
T ss_pred ceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC-----ccHHHHHHHHHcCCccccCcCHHHHHHHHHHhC
Confidence 456789999999999999999999999999999999999998 799999999999999999999999999999999
Q ss_pred CeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8873 166 TRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALI 245 (841)
Q Consensus 166 a~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vv 245 (841)
|+++++++++++++||+|+.|+++++++++|++|+||+++ ++|||+|||+|+.+|+|+||++|||||++|++++||++|
T Consensus 332 a~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~-~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iV 410 (550)
T 3p9d_G 332 GSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA-KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIV 410 (550)
T ss_dssp CCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTC-CCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred CceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCC-ceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999975 799999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCcccc
Q psy8873 246 AGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 325 (841)
Q Consensus 246 pGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d 325 (841)
||||++|++++.+|++|+++.++++|+++++|++||++||++||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.|
T Consensus 411 pGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~d 490 (550)
T 3p9d_G 411 AGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGD 490 (550)
T ss_dssp ETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSSSBCC
T ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999777778999999999999
Q ss_pred ccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 326 ILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 326 ~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
|++.|||||+.||+++|++|+++|+++|++|++|...+..+
T Consensus 491 m~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~ 531 (550)
T 3p9d_G 491 NFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSES 531 (550)
T ss_dssp HHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC-
T ss_pred hHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCccc
Confidence 99999999999999999999999999999999998766544
No 45
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=8.9e-56 Score=512.39 Aligned_cols=274 Identities=28% Similarity=0.489 Sum_probs=259.1
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++++++++|++.|++|||++++ |+++|++||.++||++++++++++|+|||++|
T Consensus 258 ~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~-----I~d~Al~~L~k~~I~av~~~~k~~le~ia~~T 332 (590)
T 3p9d_C 258 QTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKG-----VSDLAQHYLLKGGCSVLRRVKKSDNNRIARVT 332 (590)
T ss_dssp TEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSC-----CCTHHHHHHHHTTCCCCCCCCHHHHHHHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCC-----cCHHHHHHHHhccceeeccCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCC-------------------------------------
Q psy8873 165 NTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPG------------------------------------- 206 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~------------------------------------- 206 (841)
||+++++++++++++||+ |++|++..+++++|++|+||+++.
T Consensus 333 Ga~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~ 412 (590)
T 3p9d_C 333 GATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISS 412 (590)
T ss_dssp TCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC------------------------------------------
T ss_pred CCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999987641
Q ss_pred ------------------CeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccc
Q psy8873 207 ------------------RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 268 (841)
Q Consensus 207 ------------------~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~ 268 (841)
++|||+|||+|+.+++|+||++||||+++|++++|+++|||||++|++++.+|.+|+++.++
T Consensus 413 ~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g 492 (590)
T 3p9d_C 413 SGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEG 492 (590)
T ss_dssp ---------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCS
T ss_pred HHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCCh
Confidence 23999999999999999999999999999999999889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHH
Q psy8873 269 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 348 (841)
Q Consensus 269 ~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~ 348 (841)
++|+|+++|++||+.|||+||+|||+|+.+++.+|++.|.+++.++|||+.+|.+.||++.|||||+.||+++|++|+++
T Consensus 493 ~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~ 572 (590)
T 3p9d_C 493 IQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIES 572 (590)
T ss_dssp TTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987778899999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHhhhh
Q psy8873 349 VRSILKIDDILVELS 363 (841)
Q Consensus 349 a~~il~i~~ii~~~a 363 (841)
|+++|++|++|...+
T Consensus 573 a~~iL~id~ii~~~~ 587 (590)
T 3p9d_C 573 ACLLLRVDDIVSGVR 587 (590)
T ss_dssp HHHTTSEEEEECCCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999986543
No 46
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=3.7e-55 Score=507.94 Aligned_cols=270 Identities=34% Similarity=0.574 Sum_probs=260.4
Q ss_pred cceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhC
Q psy8873 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 165 (841)
Q Consensus 86 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tG 165 (841)
+.+.++++++++.+.++|++++.+++++|++.|+||||++++ |+++|++||.++||++++++++++|+|||++||
T Consensus 285 ~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~-----I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~TG 359 (562)
T 3p9d_E 285 HKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG-----FDDEANHLLLQNDLPAVRWVGGQELEHIAISTN 359 (562)
T ss_dssp CCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSS-----CCSHHHHHHHTTTCCCEECCCTTTHHHHHHHHC
T ss_pred ceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCC-----CCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhC
Confidence 447789999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CeEeecccccCCCCCcccceeeeeecCC--ceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHhcCc
Q psy8873 166 TRPIASLDHFLPEHLSSADLVEEIPAGN--SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA 243 (841)
Q Consensus 166 a~~i~~l~~l~~~~lG~~~~~~~~~ig~--~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~~~~ 243 (841)
|+++++++++++++||+|++|+++++|+ +++++|+||+++ ++|||+|||+|+.+++|+||++||||+++|++++||+
T Consensus 360 a~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~-~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~ 438 (562)
T 3p9d_E 360 GRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSR 438 (562)
T ss_dssp CCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCC-SCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCC
T ss_pred CEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCC-CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999985 899999999986 7999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC-CCcceeeecCCCc
Q psy8873 244 LIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ-GETTTGINVRKGA 322 (841)
Q Consensus 244 vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~-~~~~~G~d~~~~~ 322 (841)
+|||||++|++++.+|++++.+.+|++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+ ++.++|+|+.+|.
T Consensus 439 iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~ 518 (562)
T 3p9d_E 439 VVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYG 518 (562)
T ss_dssp EEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTB
T ss_pred cCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999974 4468999999999
Q ss_pred cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 323 ~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
+.||++.|||||+.||+++|++|+++|+++|++|++|+.
T Consensus 519 ~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 557 (562)
T 3p9d_E 519 SNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIIS 557 (562)
T ss_dssp CCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEC
T ss_pred ccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999864
No 47
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=1.3e-55 Score=512.37 Aligned_cols=275 Identities=28% Similarity=0.474 Sum_probs=253.5
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHh
Q psy8873 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTL 164 (841)
Q Consensus 85 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~t 164 (841)
++++.+++++++++++++|++++++++++|++.|+||||++++ |+++|++||.++||++++++++.+|+|||++|
T Consensus 262 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~-----I~~~al~~L~~~gI~av~~v~~~~leria~~t 336 (568)
T 3p9d_H 262 KGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAG-----VGELALHYLNRYGILVLKVPSKFELRRLCRVC 336 (568)
T ss_dssp SCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSC-----CCHHHHHHHHHHTCEEECCCCHHHHHHHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCC-----cChHHHHHHHHCCeEEEecCCHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccC-CCCeEEEEEcccchhhHHHHHHHHHHHHHHHHHHHh--c
Q psy8873 165 NTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN-PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK--Q 241 (841)
Q Consensus 165 Ga~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~-~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~~~~~--~ 241 (841)
||+++++++++++++||+|++|++.++|+++|++|+||+. .+++|||+|||+|+.+|+|+||++||||+++|++++ |
T Consensus 337 Ga~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~d 416 (568)
T 3p9d_H 337 GATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSG 416 (568)
T ss_dssp SCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999983 348999999999999999999999999999999999 8
Q ss_pred CccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC--------CCcc
Q psy8873 242 RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ--------GETT 313 (841)
Q Consensus 242 ~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~--------~~~~ 313 (841)
+++|||||++||+++.+|++|+.+.+|++|+++++|++||++|||+||+|||+|+.+++.+|++.|.+ ++.+
T Consensus 417 ~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~ 496 (568)
T 3p9d_H 417 GKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLY 496 (568)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSS
T ss_pred CeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999975 5668
Q ss_pred eeeecCCCc---cccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhc
Q psy8873 314 TGINVRKGA---ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364 (841)
Q Consensus 314 ~G~d~~~~~---~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak 364 (841)
+|||+.+|+ +.||++.|||||+.||+++|++|+++|+++|++|++|+..+.
T Consensus 497 ~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~ 550 (568)
T 3p9d_H 497 KGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKA 550 (568)
T ss_dssp SCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC------------
T ss_pred eeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcccc
Confidence 999999997 999999999999999999999999999999999999987543
No 48
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=2.6e-54 Score=500.45 Aligned_cols=338 Identities=24% Similarity=0.382 Sum_probs=310.7
Q ss_pred hhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHh-------------------------
Q psy8873 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK------------------------- 72 (841)
Q Consensus 18 k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k------------------------- 72 (841)
.+..+|.+|+.+||.||+.||++|||||||+||||||++++|+|+|||||+||||
T Consensus 10 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~GD 89 (546)
T 3p9d_F 10 AESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGD 89 (546)
T ss_dssp EEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence 3667899999999999999999999999999999999999999999999999222
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 73 -------------------------------------------------------------------------------- 72 (841)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (841)
T Consensus 90 GTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~d~ 169 (546)
T 3p9d_F 90 GTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEV 169 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHCSS
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcchhHHHH
Confidence
Q ss_pred ------------------------------------------hh----cccccc-------cccc-------------cc
Q psy8873 73 ------------------------------------------QM----NVIHPA-------AKMM-------------DH 86 (841)
Q Consensus 73 ------------------------------------------~~----~~~~p~-------ak~~-------------~~ 86 (841)
-+ ...||. ++++ ++
T Consensus 170 la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e~~~ 249 (546)
T 3p9d_F 170 LTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNS 249 (546)
T ss_dssp HHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCSSCB
T ss_pred HHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCcccccccccCc
Confidence 11 123442 1211 45
Q ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHhC---------C-CeEEEecchhhhhHHHHHHHHHhhhheeeeccccchh
Q psy8873 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAG---------C-NVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIERED 156 (841)
Q Consensus 87 ~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~---------~-~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~ 156 (841)
++.++++++++.++++|++++.+.+++|...+ + +|||++++ |+++|+|||.++||++++++++.+
T Consensus 250 ~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~-----I~~~Al~~L~~~gI~~vr~v~~~~ 324 (546)
T 3p9d_F 250 GFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKG-----IDPMSLDVFAKHNILALRRAKRRN 324 (546)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSC-----CCHHHHHHHTTTTCEEECCCCHHH
T ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCc-----CcHHHHHHHHHCCCeeEecCCHHH
Confidence 78889999999999999999999999998754 3 37888887 899999999999999999999999
Q ss_pred HHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCCCCeEEEEEcccchhhHHHHHHHHHHHHHHHH
Q psy8873 157 IEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVR 236 (841)
Q Consensus 157 L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~~l~e~k~~l~dal~~~~ 236 (841)
|+|||++|||+++++++++++++||+|++|+++.+|+++|++|+||+++ ..|||+|||+|+.+++|+||++|||||++|
T Consensus 325 leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~-~~~tI~lrG~te~~l~E~kr~l~DAl~~~r 403 (546)
T 3p9d_F 325 MERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP-KSCTILIKGSTHYALAQTKDAVRDGLRAVA 403 (546)
T ss_dssp HHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCC-SCEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCC-ceEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 899999999999999999999999999999
Q ss_pred HHHhcCccccCCChHHHHHHHhhhh---hhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhccC----
Q psy8873 237 CLVKQRALIAGGGAPEIELSLKLTK---YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ---- 309 (841)
Q Consensus 237 ~~~~~~~vvpGgGa~e~~~~~~L~~---~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~~~~~---- 309 (841)
++++||++|||||++|++++.+|++ |+++.++++|+++++|++||+.|||+||+|||+|+.+++.+|++.|.+
T Consensus 404 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~ 483 (546)
T 3p9d_F 404 NVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDS 483 (546)
T ss_dssp HHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTS
T ss_pred HHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999 688999999999999999999999999999999999999999999863
Q ss_pred -CCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhh
Q psy8873 310 -GETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361 (841)
Q Consensus 310 -~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~ 361 (841)
++.++|||+.+|.+.||++.|||||+.||+++|++|+++|+++|++|++|+.
T Consensus 484 ~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 536 (546)
T 3p9d_F 484 DETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRA 536 (546)
T ss_dssp TTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999999999999999999999864
No 49
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=3.1e-48 Score=447.11 Aligned_cols=339 Identities=22% Similarity=0.308 Sum_probs=301.1
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------ 85 (841)
|.|++.||.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+||+|+++++|| +|||+.
T Consensus 1 ~~k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~q 80 (543)
T 1we3_A 1 MAKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKT 80 (543)
T ss_dssp -CEEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999999999999999999999999999999999999 988850
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 81 d~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~~~~i~~li 160 (543)
T 1we3_A 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISANDPEVGKLI 160 (543)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHTCHHHHHHH
T ss_pred heecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcCCHHHHHHH
Confidence
Q ss_pred --------------------------------------cceeecCHHHHHHH------------HHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HKVVVSDYSAMDRV------------LKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~~~i~~~~~l~~~------------~~~E~~~i~~~l~~i~ 115 (841)
+++.+++++.+... +.. .+.+.++++++.
T Consensus 161 ~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~-~~~l~~~le~i~ 239 (543)
T 1we3_A 161 ADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSN-VRELLPILEQVA 239 (543)
T ss_dssp HHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCC-HHHHHHHHHHHH
T ss_pred HHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCC-HHHHHHHHHHHH
Confidence 01111111111000 011 134678999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe-----------eeeccccchhHHHHHHHhCCeEeec-----ccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV-----------LVVKDIEREDIEFVCKTLNTRPIAS-----LDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i-----------~~v~~~~~~~L~~ia~~tGa~~i~~-----l~~l~~~~ 179 (841)
+.|+||||++++ |+++|++||..+++ |+++++++++|+|||++|||+++++ ++++++++
T Consensus 240 ~~g~~lvii~~~-----I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~ 314 (543)
T 1we3_A 240 QTGKPLLIIAED-----VEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSM 314 (543)
T ss_dssp TTTCCEEEEESC-----BCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGG
T ss_pred hcCCCEEEEcCC-----ccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHH
Confidence 999999999998 78899999887654 5566899999999999999999995 89999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|+.|++. ++++++|+||+++ +++|||+|||+|+.+++|+|
T Consensus 315 LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~ 391 (543)
T 1we3_A 315 LGRAERVRIT---KDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKK 391 (543)
T ss_dssp CEEEEEEEEC---SSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHH
T ss_pred CCCceEEEEE---cCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHH
Confidence 9999999764 7999999999753 47899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|++|||||++|+++++| +|||||++|++++.+|++++.+.++++|+++++|++||+.||++||+|||+|+.+++.+|++
T Consensus 392 r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~ 470 (543)
T 1we3_A 392 HRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILA 470 (543)
T ss_dssp HHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999888999999999999999999999999999999999999999
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
.|. +.++|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.+.++..
T Consensus 471 ~h~--~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~ 529 (543)
T 1we3_A 471 ETK--NPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKK 529 (543)
T ss_dssp CCS--CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC-
T ss_pred hcC--CCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 884 46799999999999999999999999999999999999999999999998766533
No 50
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=3.3e-48 Score=446.42 Aligned_cols=336 Identities=19% Similarity=0.293 Sum_probs=269.1
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------ 85 (841)
|.|++.||.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+||+|+++++|| +|||+.
T Consensus 2 ~~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~q 81 (545)
T 1iok_A 2 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRT 81 (545)
T ss_dssp CCEEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHG
T ss_pred CchhhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999999999999 988750
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 d~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~va~iS~~~~~~i~~l 161 (545)
T 1iok_A 82 NDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQ 161 (545)
T ss_dssp GGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCSTTTTTHHHHHTTTTCHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHhhcCCchhHHHH
Confidence
Q ss_pred ---------------------------------------cceeecCHHHHHH-H-----------HHHHHHHHHHHHHHH
Q psy8873 86 ---------------------------------------HKVVVSDYSAMDR-V-----------LKEERAYILNIVKQI 114 (841)
Q Consensus 86 ---------------------------------------~~~~i~~~~~l~~-~-----------~~~E~~~i~~~l~~i 114 (841)
+++.+++++.+.. + +.. .+.+.++++++
T Consensus 162 i~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~-~~~l~~~le~i 240 (545)
T 1iok_A 162 IAEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSS-LQPMVPLLESV 240 (545)
T ss_dssp HHHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCC-CCC--------
T ss_pred HHHHHHHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcCC-HHHHHHHHHHH
Confidence 0111111111000 0 000 02356889999
Q ss_pred HHhCCCeEEEecchhhhhHHHHHHHHHhhhhe-----------eeeccccchhHHHHHHHhCCeEeec-----ccccCCC
Q psy8873 115 KKAGCNVLLVQKSILRDAISDLAIHFLDKIKV-----------LVVKDIEREDIEFVCKTLNTRPIAS-----LDHFLPE 178 (841)
Q Consensus 115 ~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i-----------~~v~~~~~~~L~~ia~~tGa~~i~~-----l~~l~~~ 178 (841)
.+.|+||||++++ |+++|++||..+++ |+++++++++|+|||++|||+++++ +++++++
T Consensus 241 ~~~g~~lvIi~~~-----I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~ 315 (545)
T 1iok_A 241 IQSQKPLLIVAED-----VEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTID 315 (545)
T ss_dssp ---CCCCEEEESC-----BC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CT
T ss_pred HhcCCCEEEECCC-----cCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHH
Confidence 9999999999998 79999999998665 6666999999999999999999996 9999999
Q ss_pred CCcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHH
Q psy8873 179 HLSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEA 224 (841)
Q Consensus 179 ~lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~ 224 (841)
+||+|++|++. ++++++|+||+++ +++|||+|||+|+.+++|+
T Consensus 316 ~LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~ 392 (545)
T 1iok_A 316 MLGRAKKVSIN---KDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKER 392 (545)
T ss_dssp TSEEEEEEEEC---SSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHH
T ss_pred HcCcCcEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHH
Confidence 99999999874 6999999999753 4789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q psy8873 225 ARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 304 (841)
Q Consensus 225 k~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~ 304 (841)
||++|||+|++|+++++| +|||||++|++++.+|++++. .++++|+++++|++||+.||++||+|||+|+.+++.+|+
T Consensus 393 kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~ 470 (545)
T 1iok_A 393 KDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVR 470 (545)
T ss_dssp HHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999 999999999999999999977 889999999999999999999999999999999999999
Q ss_pred hhccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhcc
Q psy8873 305 NRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365 (841)
Q Consensus 305 ~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~ 365 (841)
+.| +.++|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.+.+..
T Consensus 471 ~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 528 (545)
T 1iok_A 471 ESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEP 528 (545)
T ss_dssp SCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC--
T ss_pred hhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCcc
Confidence 876 3579999999999999999999999999999999999999999999999887654
No 51
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=1.4e-47 Score=440.82 Aligned_cols=335 Identities=19% Similarity=0.293 Sum_probs=297.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhccccc----cccccc-------
Q psy8873 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP----AAKMMD------- 85 (841)
Q Consensus 17 ~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p----~ak~~~------- 85 (841)
.|++.||.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+||+|+++++|| +|||+.
T Consensus 2 ~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd 81 (547)
T 1kp8_A 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81 (547)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhc
Confidence 488999999999999999999999999999999999999999999999999999999999999 988850
Q ss_pred --------------------------------------------------------------------------------
Q psy8873 86 -------------------------------------------------------------------------------- 85 (841)
Q Consensus 86 -------------------------------------------------------------------------------- 85 (841)
T Consensus 82 ~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~li 161 (547)
T 1kp8_A 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLI 161 (547)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHHH
Confidence
Q ss_pred --------------------------------------cceeecCHHHHHHH------------HHHHHHHHHHHHHHHH
Q psy8873 86 --------------------------------------HKVVVSDYSAMDRV------------LKEERAYILNIVKQIK 115 (841)
Q Consensus 86 --------------------------------------~~~~i~~~~~l~~~------------~~~E~~~i~~~l~~i~ 115 (841)
+++.+++++.+... +.. .+.+.++++++.
T Consensus 162 adAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~-~~~l~~~le~i~ 240 (547)
T 1kp8_A 162 AEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN-IREMLPVLEAVA 240 (547)
T ss_dssp HHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECC-GGGTHHHHHHHH
T ss_pred HHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCC-HHHHHHHHHHHH
Confidence 01111111110000 000 134678999999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhhe-----------eeeccccchhHHHHHHHhCCeEeec-----ccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIKV-----------LVVKDIEREDIEFVCKTLNTRPIAS-----LDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i-----------~~v~~~~~~~L~~ia~~tGa~~i~~-----l~~l~~~~ 179 (841)
+.|+||||++++ |+++|++||..+++ |+++++++++|+|||++|||+++++ ++++++++
T Consensus 241 ~~g~~lvIi~~~-----I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~ 315 (547)
T 1kp8_A 241 KAGKPLLIIAED-----VEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLED 315 (547)
T ss_dssp GGGCCEEEEESE-----ECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTT
T ss_pred hcCCCEEEECCC-----cCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHH
Confidence 999999999998 79999999988765 6666999999999999999999996 99999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|++|++. ++++++|+||+++ +++|||+|||+|+.+++|+|
T Consensus 316 LG~a~~v~~~---~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~k 392 (547)
T 1kp8_A 316 LGQAKRVVIN---KDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKK 392 (547)
T ss_dssp SEEEEEEEEC---SSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHH
T ss_pred CCceeEEEEc---cceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHH
Confidence 9999999774 7999999999753 36899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|++|||+|++|+++++| +|||||++|++++.+|++++. .++++|+++++|++||+.|||+||+|||+|+.+++.+|++
T Consensus 393 r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~ 470 (547)
T 1kp8_A 393 ARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470 (547)
T ss_dssp HHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999999 999999999999999999977 8899999999999999999999999999999999999996
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
. +.++|||+.+|.+.||++.|||||+.||++++++|+++|+++|++|++|.+.++..
T Consensus 471 ~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~ 527 (547)
T 1kp8_A 471 G----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKND 527 (547)
T ss_dssp S----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--
T ss_pred c----CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccC
Confidence 4 35799999999999999999999999999999999999999999999998876543
No 52
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=1.1e-47 Score=440.26 Aligned_cols=335 Identities=21% Similarity=0.306 Sum_probs=227.5
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhHhhhcccccccccccccCCCceEEeccHHHHHhhhcccccc----ccccc------
Q psy8873 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPA----AKMMD------ 85 (841)
Q Consensus 16 ~~k~~~~~~~~~~~~i~~~~~la~~v~~tlGP~G~~k~i~~~~g~~~itnDg~ti~k~~~~~~p~----ak~~~------ 85 (841)
|.|++.||++||.+|+.|++.||++|||||||+||||||++++|+|+|||||+||+|+|+++||. |||+.
T Consensus 1 ~~k~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~q 80 (546)
T 3rtk_A 1 MAKTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT 80 (546)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHHHHHHTSC
T ss_pred CCceeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999999999999999999999999999996 77640
Q ss_pred ----------------------------------------------------cceeecCHHHHHHH--------------
Q psy8873 86 ----------------------------------------------------HKVVVSDYSAMDRV-------------- 99 (841)
Q Consensus 86 ----------------------------------------------------~~~~i~~~~~l~~~-------------- 99 (841)
....+++.+.+..+
T Consensus 81 d~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~~~~i~~li 160 (546)
T 3rtk_A 81 DDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLI 160 (546)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCCchHHHHHH
Confidence 00111111111000
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHHHH
Q psy8873 100 ----------------------------------------------------------------LKEERAYILNIVKQIK 115 (841)
Q Consensus 100 ----------------------------------------------------------------~~~E~~~i~~~l~~i~ 115 (841)
+. ..+.+.+++++|.
T Consensus 161 adAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs-~~~~l~~~le~I~ 239 (546)
T 3rtk_A 161 AEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVS-TVKDLLPLLEKVI 239 (546)
T ss_dssp HHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEEC-CSTTTHHHHHHHH
T ss_pred HHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccC-CHHHHHHHHHHHH
Confidence 00 0033677899999
Q ss_pred HhCCCeEEEecchhhhhHHHHHHHHHhhhh------eee-----eccccchhHHHHHHHhCCeEee-----cccccCCCC
Q psy8873 116 KAGCNVLLVQKSILRDAISDLAIHFLDKIK------VLV-----VKDIEREDIEFVCKTLNTRPIA-----SLDHFLPEH 179 (841)
Q Consensus 116 ~~~~~lvi~~~~i~~~~v~~lal~~l~~~~------i~~-----v~~~~~~~L~~ia~~tGa~~i~-----~l~~l~~~~ 179 (841)
+.|+||||++++ |+++|++||..++ +.+ |++.++++|+|||++|||++++ +++++++++
T Consensus 240 ~~g~~lvIi~~~-----I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~ 314 (546)
T 3rtk_A 240 GAGKPLLIIAED-----VEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSL 314 (546)
T ss_dssp TTTCCEEEEESE-----ECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTT
T ss_pred hcCCCEEEEcCC-----CCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhh
Confidence 999999999998 7889999888654 344 4566788999999999999999 699999999
Q ss_pred CcccceeeeeecCCceEEEEEcccCC----------------------------------CCeEEEEEcccchhhHHHHH
Q psy8873 180 LSSADLVEEIPAGNSRFVKISGIQNP----------------------------------GRTLTVVVRGSNKLVLDEAA 225 (841)
Q Consensus 180 lG~~~~~~~~~ig~~~~~~~~g~~~~----------------------------------~~~~tI~lrG~t~~~l~e~k 225 (841)
||+|++|+ ++++++++|+||+++ |++|||+|||+|+.+++|+|
T Consensus 315 LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~e 391 (546)
T 3rtk_A 315 LGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERK 391 (546)
T ss_dssp SEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHH
T ss_pred CCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Confidence 99999987 468999999998763 45899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccCCChHHHHHHHhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHh
Q psy8873 226 RSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305 (841)
Q Consensus 226 ~~l~dal~~~~~~~~~~~vvpGgGa~e~~~~~~L~~~~~~~~~~e~~~i~~~~~AL~~ip~~la~NaG~d~~~~~~~l~~ 305 (841)
|++|||||++|+++++| +|||||++|++++.+|++++ .++++|+++++|++||+.||||||+|||+|+.+++.+|++
T Consensus 392 r~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~ 468 (546)
T 3rtk_A 392 HRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN 468 (546)
T ss_dssp HHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999999 99999999999999999987 7999999999999999999999999999999999999997
Q ss_pred hccCCCcceeeecCCCccccccccccccceeeechhhhhhHHHHHHHHhhhhHHhhhhccc
Q psy8873 306 RHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366 (841)
Q Consensus 306 ~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~al~~a~~~a~~il~i~~ii~~~ak~q 366 (841)
.+ ..+|||+.+|.+.||++.|||||++||+++|++|+++|+++|++|++|++.+...
T Consensus 469 ~~----~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~ 525 (546)
T 3rtk_A 469 LP----AGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKE 525 (546)
T ss_dssp SC----TTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred hc----CCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 52 2389999999999999999999999999999999999999999999999876543
No 53
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=3.1e-34 Score=283.68 Aligned_cols=173 Identities=20% Similarity=0.397 Sum_probs=149.5
Q ss_pred cccceeEEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy8873 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN 565 (841)
Q Consensus 486 ~~dS~li~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~ 565 (841)
++||++++|++|++++...+||+.++||||++++|+|++++++++.++.++++++++++.++|++++++++++|++.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36899999999999994448999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCcee-eeeEEEEEecCeeEEEE
Q psy8873 566 VLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKI 644 (841)
Q Consensus 566 lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~ 644 (841)
|||++++| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|
T Consensus 81 VVl~~k~I-----~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~ 155 (178)
T 1gml_A 81 VVITEKGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFI 155 (178)
T ss_dssp EEEESSCB-----CHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEE
T ss_pred EEEECCcc-----cHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEE
Confidence 99999999 9999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred EccCCCCceEEEEEeCCCHH
Q psy8873 645 SGIQNPGRTLTVVVRGSNKL 664 (841)
Q Consensus 645 ~~~~~~~~~~TIllrG~t~~ 664 (841)
++|+++ +.|||+|||++.+
T Consensus 156 ~gc~~~-~~~TIllRG~~~~ 174 (178)
T 1gml_A 156 TDCKDP-KACTILLRGASHH 174 (178)
T ss_dssp EEESST-TSCEEEEEC----
T ss_pred ECCCCC-CEEEEEEECCCcc
Confidence 999987 9999999999864
No 54
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.96 E-value=8.9e-30 Score=246.63 Aligned_cols=154 Identities=32% Similarity=0.524 Sum_probs=147.9
Q ss_pred EEeEEEecCCCCCCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecC
Q psy8873 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQK 571 (841)
Q Consensus 492 i~G~v~~~~~~~~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 571 (841)
++|++|++++...+||+.++||||++++|+|+++++++++++.++++++++.+.++|++++.+++++|++.|+||||+++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 47999999994448999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCcccccCCCCCCCCceeeeeEEEEEecCeeEEEEEccCCC
Q psy8873 572 SILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650 (841)
Q Consensus 572 ~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~ 650 (841)
+| ++++++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++.
T Consensus 81 ~I-----~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 81 GI-----DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp CB-----CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred cc-----CHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999999875
No 55
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=99.92 E-value=1.7e-25 Score=221.14 Aligned_cols=146 Identities=20% Similarity=0.382 Sum_probs=121.3
Q ss_pred HHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhhe
Q psy8873 67 GATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146 (841)
Q Consensus 67 g~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i 146 (841)
....+-+.+++.|..++ +.++.+++++++++++++|++++++++++|++.|+|||+++++ |+++|+|||.++||
T Consensus 28 akI~ll~~~Le~~k~e~-~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~-----I~d~a~~~l~k~gI 101 (178)
T 1gml_A 28 PRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANV 101 (178)
T ss_dssp CCEEEESSCBSCC---------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSC-----BCHHHHHHHHHTTC
T ss_pred ceEEEEecccCCccccC-ccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCc-----ccHHHHHHHHHCCC
Confidence 44555567777777776 8899999999999999999999999999999999999999998 89999999999999
Q ss_pred eeeccccchhHHHHHHHhCCeEeecccccCCCCCcc-cceeeeeecCCceEEEEEcccCCCCeEEEEEcccchh
Q psy8873 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSS-ADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKL 219 (841)
Q Consensus 147 ~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~-~~~~~~~~ig~~~~~~~~g~~~~~~~~tI~lrG~t~~ 219 (841)
++++++++++|+|||++|||+++++++++++++||+ |+.|+++++|+++|++|+||+++ .+|||+|||++..
T Consensus 102 ~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~~-~~~TIllRG~~~~ 174 (178)
T 1gml_A 102 TAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRGASHH 174 (178)
T ss_dssp EEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESST-TSCEEEEEC----
T ss_pred EEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCCC-CEEEEEEECCCcc
Confidence 999999999999999999999999999999999999 99999999999999999999985 8999999999875
No 56
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.86 E-value=2.6e-22 Score=194.22 Aligned_cols=134 Identities=30% Similarity=0.471 Sum_probs=123.4
Q ss_pred cHHHHHhhhccccccccccccceeecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhh
Q psy8873 66 DGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145 (841)
Q Consensus 66 Dg~ti~k~~~~~~p~ak~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~ 145 (841)
|+...+-+++++.|..++ ++++.+++++++++++++|++++++++++|+++|+|||+++++ |+++|+|||.++|
T Consensus 21 nakI~ll~~~Le~~k~e~-~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~-----I~d~a~~~l~k~g 94 (159)
T 1ass_A 21 NAKIALIDSALEIKKTEI-EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEG 94 (159)
T ss_dssp EEEEEEESSCBSCCHHHH-HHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSC-----BCHHHHHHHHHTT
T ss_pred CccEEEEecCcCCccccc-ceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCc-----cCHHHHHHHHHCC
Confidence 355555567777776666 7889999999999999999999999999999999999999998 8999999999999
Q ss_pred eeeeccccchhHHHHHHHhCCeEeecccccCCCCCcccceeeeeecCCceEEEEEcccCC
Q psy8873 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 205 (841)
Q Consensus 146 i~~v~~~~~~~L~~ia~~tGa~~i~~l~~l~~~~lG~~~~~~~~~ig~~~~~~~~g~~~~ 205 (841)
|++++++++++|+|||++|||++++++++++++.||+|+.|+++++|++++++|+||++.
T Consensus 95 I~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 95 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp CEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred CEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 999999999999999999999999999999999999999999999999999999999863
No 57
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.37 E-value=1.6e-12 Score=125.31 Aligned_cols=146 Identities=23% Similarity=0.279 Sum_probs=111.7
Q ss_pred ceeEEeEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8873 489 TELVDGLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKK 561 (841)
Q Consensus 489 S~li~G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~ 561 (841)
.++++||.|+++|.| +.|.-.++||.|++.+ .+ |++. +.+.++++++.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitd-----------kK--Is~i-----------~~ilP~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQ-----------DK--ISSL-----------PDLLPLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBS-----------SE--ECCH-----------HHHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEc-----------Cc--cCCH-----------HHHHHHHHHHHH
Confidence 468899999999955 2333445555555443 33 4666 357889999999
Q ss_pred cCCcEEEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeee
Q psy8873 562 AGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADL 630 (841)
Q Consensus 562 ~g~~lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~ 630 (841)
.+.+|+|++.+|++|||..++.|.++ ..+++||+.+. +..|++||.+|||++++. +++.+.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 99999999999999999999999999 58999999885 788999999999999984 67888999999999
Q ss_pred EEEEEecCeeEEEEEccCCCCceEEEEEeC-CCHHHHHHHHHHHHH
Q psy8873 631 VEEIPAGNSRFVKISGIQNPGRTLTVVVRG-SNKLVLDEAARSLHD 675 (841)
Q Consensus 631 v~~~~ig~~~~~~~~~~~~~~~~~TIllrG-~t~~~l~e~~r~i~d 675 (841)
|.+. +--|.+++| .+...++++-.-+..
T Consensus 138 v~vt-----------------kd~T~iv~G~g~~~~I~~Rv~qIr~ 166 (194)
T 3m6c_A 138 VVVS-----------------KDDTVIVDGGGTAEAVANRAKHLRA 166 (194)
T ss_dssp EEEC-----------------SSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEc-----------------CCceEEecCCCCHHHHHHHHHHHHH
Confidence 8861 233455544 555666555554443
No 58
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.28 E-value=1.2e-11 Score=113.81 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=97.0
Q ss_pred eEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Q psy8873 494 GLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 566 (841)
Q Consensus 494 G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~l 566 (841)
||.|+++|.| +.|.-.++||.|++.+-. |++. +.+.++++++.+.+.+|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkK-------------Is~i-----------~~llP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNV-----------RELLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSE-------------ECCH-----------HHHHHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccc-------------ccCH-----------HHHHHHHHHHHHHCCCE
Confidence 8999999944 344455667776655433 4666 45788999999999999
Q ss_pred EEecCCcccccccHHHHHHHH-hcCcEEEecC-----ChhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEE
Q psy8873 567 LLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEE 633 (841)
Q Consensus 567 vi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v-----~~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~ 633 (841)
+|++++|++|||..++.|.++ ..+++||+.+ ++..|++||.+||+++++. +++.+.++||+|+++.+
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v 134 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEE
Confidence 999999999999999999999 6899999988 5888999999999999984 67788899999999986
No 59
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.28 E-value=3.9e-11 Score=115.92 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=110.2
Q ss_pred EeEEEecCCCC-------CCCCceeecceEEEEEeecCCCcccCCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy8873 493 DGLVFTQKSAN-------VNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCN 565 (841)
Q Consensus 493 ~G~v~~~~~~~-------~~m~~~~~n~killl~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~i~~~v~~i~~~g~~ 565 (841)
+|+.|+++|.+ +.|.-.++||.|++.+-. |++. +.+.++++++.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkK-------------Is~i-----------~~ilP~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKK-------------ISNI-----------RELLPVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEE-------------ECCH-----------HHHHHHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCc-------------cCCH-----------HHHHHHHHHHHHhCCC
Confidence 59999999944 234445666666666544 3566 4588899999999999
Q ss_pred EEEecCCcccccccHHHHHHHH-hcCcEEEecCC-----hhHHHHHHHHcCCccccc-----CCCCCCCCceeeeeEEEE
Q psy8873 566 VLLVQKSILRDAISDLAIHFLD-KIKVLVVKDIE-----REDIEFVCKTLNTRPIAS-----LDHFLPEHLSSADLVEEI 634 (841)
Q Consensus 566 lvi~~~~I~~~~l~~~~~~~l~-~~~I~~v~~v~-----~~~L~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~ 634 (841)
|+|++++|++|||..++.|.++ ..+++||+.+. +..|++||.+|||++++. +++++.++||+|++|.+.
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vt 148 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVIN 148 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEEC
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEc
Confidence 9999999999999999999999 58999999885 788999999999999984 678889999999998861
Q ss_pred EecCeeEEEEEccCCCCceEEEEEeC-CCHHHHHHHHHHHHH
Q psy8873 635 PAGNSRFVKISGIQNPGRTLTVVVRG-SNKLVLDEAARSLHD 675 (841)
Q Consensus 635 ~ig~~~~~~~~~~~~~~~~~TIllrG-~t~~~l~e~~r~i~d 675 (841)
+--|.++.| .+...++++-.-+..
T Consensus 149 -----------------kd~TtIv~G~G~~~~I~~Rv~qIr~ 173 (201)
T 3osx_A 149 -----------------KDTTTIIDGVGEEGAIAARVTQIRQ 173 (201)
T ss_dssp -----------------SSCEEEEEECCCHHHHHHHHHHHHH
T ss_pred -----------------CCceEEecCCCCHHHHHHHHHHHHH
Confidence 233555544 555666655554443
No 60
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=98.99 E-value=1.1e-09 Score=100.68 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.+.+|++.+.+.|++|++++++++++..++.+.++ ..++.+++.+ +++.|+|||.+|||++++ +++
T Consensus 40 ~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le 119 (145)
T 1srv_A 40 RELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLE 119 (145)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGG
T ss_pred HHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccc
Confidence 57889999999999999999999999999999999998 4566555555 677899999999999997 578
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+.+.++||+|+++.+. .+.++++.|
T Consensus 120 ~~~~~~LG~a~~v~vt---kd~TtIv~G 144 (145)
T 1srv_A 120 NATLSMLGRAERVRIT---KDETTIVGG 144 (145)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHhHCCccCEEEEc---CCCeEEeCC
Confidence 8899999999888765 667766654
No 61
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=98.82 E-value=2e-08 Score=97.18 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh-hhheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD-KIKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~-~~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.+++|.+.+.+.||+|++++++++++..++++.++ ..++.+++.+ ++..|+|||.+|||++++ +++
T Consensus 53 ~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le 132 (201)
T 3osx_A 53 RELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELE 132 (201)
T ss_dssp HHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccc
Confidence 57889999999999999999999999999999999998 4666555555 567799999999999997 578
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+++.++||+|+++.+. .+.++++.|
T Consensus 133 ~~~~~~LG~a~~V~vt---kd~TtIv~G 157 (201)
T 3osx_A 133 KATLEDLGQAKRVVIN---KDTTTIIDG 157 (201)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHhhCCCccEEEEc---CCceEEecC
Confidence 8999999999887765 444444443
No 62
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=98.81 E-value=2.9e-08 Score=95.87 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhh-hheeeeccc-----cchhHHHHHHHhCCeEee-----ccc
Q psy8873 105 AYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK-IKVLVVKDI-----EREDIEFVCKTLNTRPIA-----SLD 173 (841)
Q Consensus 105 ~~i~~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~-~~i~~v~~~-----~~~~L~~ia~~tGa~~i~-----~l~ 173 (841)
+.+.+.+|.+.+.+.||+|+++++++++++.++.+.++. .++.+++.+ ++..|+|||.+|||++++ +++
T Consensus 46 ~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le 125 (194)
T 3m6c_A 46 PDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLR 125 (194)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred HHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccc
Confidence 578899999999999999999999999999999999984 666555555 577799999999999998 678
Q ss_pred ccCCCCCcccceeeeeecCCceEEEEEc
Q psy8873 174 HFLPEHLSSADLVEEIPAGNSRFVKISG 201 (841)
Q Consensus 174 ~l~~~~lG~~~~~~~~~ig~~~~~~~~g 201 (841)
+++.++||+|+++.+. .+.++++.|
T Consensus 126 ~~~~~~LG~a~~v~vt---kd~T~iv~G 150 (194)
T 3m6c_A 126 EVGLEVLGSARRVVVS---KDDTVIVDG 150 (194)
T ss_dssp GCCGGGCEEEEEEEEC---SSCEEEEEE
T ss_pred cCCHHHCCCccEEEEc---CCceEEecC
Confidence 8999999999887765 445444443
No 63
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=50.50 E-value=18 Score=29.80 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
.++.+.+-++.+|+++.|.+.+ +-.....++.+++||.+...++.+|.+.+
T Consensus 19 v~kai~~gkaklViiA~D~~~~-~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADPI-LTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred HHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 4455556678999999997764 45556777889999999877776665444
No 64
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=48.19 E-value=32 Score=30.93 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
.++.+.+-++.+|+++.+.+..-+-.....++.+++||.+...++.+|.+.+
T Consensus 32 v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~ 83 (126)
T 2xzm_U 32 VLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYL 83 (126)
T ss_dssp HHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHH
T ss_pred HHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHH
Confidence 3455566789999999997654555677788889999998766665555443
No 65
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=46.99 E-value=28 Score=29.80 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
..+.+.+-++.+||++.|.+......+ .+++..++||.+...++.+ +..++|-.
T Consensus 27 v~kai~~gka~lViiA~D~~~~~~~~i-~~~c~~~~vp~~~~~s~~e---LG~A~Gk~ 80 (101)
T 3v7q_A 27 VIKEIRNARAKLVLLTEDASSNTAKKV-TDKCNYYKVPYKKVESRAV---LGRSIGKE 80 (101)
T ss_dssp HHHHHHTTCCSEEEEETTSCHHHHHHH-HHHHHHTTCCEEEESCHHH---HHHHTTSS
T ss_pred hHHHHhcCceeEEEEeccccccchhhh-cccccccCCCeeeechHHH---HHhhhCcc
Confidence 345556677999999999877755544 6777889999988755544 55556654
No 66
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=45.91 E-value=42 Score=29.78 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHH
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 160 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~i 160 (841)
.++.+.+-.+.+||++.|.+...+-.....++.+++||.+...++.+|.+.
T Consensus 28 v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a 78 (121)
T 2lbw_A 28 VVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAA 78 (121)
T ss_dssp HHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHH
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHH
Confidence 346666678999999999776555555667888999999877777666654
No 67
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=39.89 E-value=29 Score=30.86 Aligned_cols=50 Identities=4% Similarity=0.124 Sum_probs=35.0
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHH
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 160 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~i 160 (841)
.+.+.+-.+.+||++.|.+...+-.....++.+++||.+...++.+|...
T Consensus 38 ~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a 87 (120)
T 1xbi_A 38 TKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKA 87 (120)
T ss_dssp HHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHH
T ss_pred HHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 45556667999999999766554555667777889987766666555443
No 68
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=39.23 E-value=45 Score=28.47 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
..+.+.+-++.+||++.|.+..... ...+++..++||.+...++.+ +..++|-.
T Consensus 26 v~kai~~gka~lViiA~D~~~~~~~-~i~~~c~~~~ip~~~~~s~~e---LG~a~Gk~ 79 (101)
T 3on1_A 26 VVKAVQNGQVTLVILSSDAGIHTKK-KLLDKCGSYQIPVKVVGNRQM---LGRAIGKH 79 (101)
T ss_dssp HHHHHHTTCCSEEEEETTSCHHHHH-HHHHHHHHHTCCEEEESCHHH---HHHHTTSS
T ss_pred HHHHHHcCCCcEEEEeCCCCHHHHH-HHHHHHHHcCCCEEEeCCHHH---HHHHhCCc
Confidence 3455566679999999997776544 456777889999987655544 55556653
No 69
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=36.72 E-value=33 Score=30.44 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.+.+-.+.+||++.|.+...+-.....++..++||.+...++.+|. .++|-
T Consensus 38 ~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG---~a~G~ 90 (120)
T 1vq8_F 38 TKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLG---HAAGL 90 (120)
T ss_dssp HHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHH---HHTTC
T ss_pred HHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH---HHhCC
Confidence 455566678999999997665545556667778899877666655544 44454
No 70
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=35.49 E-value=67 Score=28.30 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
..+.+.+.++++||+.. +..-+.+.|.+.||.++.......-+-+.....++
T Consensus 57 ~~~~l~~~gv~~vi~~~------iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIASS------PGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEECC------SSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEECC------cCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 34555678999999987 79999999999999999865543334444444443
No 71
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=35.06 E-value=78 Score=28.32 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=39.2
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHH
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCK 607 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~ 607 (841)
.++.|.+-.+.+||.+.+.+|..+-.....+|.+++|-.+...++.+|-+.+-
T Consensus 32 v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 32 VLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp HHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred HHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 45555566789999999996655556777889999999998777766554433
No 72
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=34.90 E-value=34 Score=30.53 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHH
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIE 158 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~ 158 (841)
.+.+.+-.+.+||++.|.+...+-.....++.+++||.+...++.+|.
T Consensus 37 ~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG 84 (124)
T 2fc3_A 37 TKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLG 84 (124)
T ss_dssp HHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHH
T ss_pred HHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 455556678899999987665444555667777888876665554444
No 73
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=33.28 E-value=31 Score=30.51 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=33.3
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHH
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEF 159 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ 159 (841)
.+.+.+-.+.+||++.|.+...+-.....++.+++||.+...++.+|..
T Consensus 36 ~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~ 84 (119)
T 1rlg_A 36 TKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGR 84 (119)
T ss_dssp HHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHH
T ss_pred HHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHH
Confidence 4555556688999999876654445566677788888776666555443
No 74
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=33.25 E-value=41 Score=30.55 Aligned_cols=53 Identities=8% Similarity=-0.037 Sum_probs=36.9
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.+.+-++.+||++.|.+...+-.....++..++||.+...++.+ +..++|-
T Consensus 50 ~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~e---LG~a~G~ 102 (135)
T 2aif_A 50 TKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVA---LGRACGV 102 (135)
T ss_dssp HHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHH---HHHHhCC
Confidence 4555556688999999977665545666777889999887655544 4455554
No 75
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=32.71 E-value=77 Score=27.16 Aligned_cols=54 Identities=4% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeec-cccchhHHHHHHHhCC
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK-DIEREDIEFVCKTLNT 166 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~-~~~~~~L~~ia~~tGa 166 (841)
+.++.+.+-.+.+||++.|.+.... ....+++..++||.+. ..++.+| ..++|-
T Consensus 29 ~v~kai~~gkaklViiA~D~~~~~~-~~i~~~c~~~~ip~~~~~~s~~eL---G~a~Gk 83 (104)
T 4a18_G 29 STIKAIRNGTAKLVFISNNCPTVRK-SEIEYYASLAQISIHHFVGSNVEL---GTACGK 83 (104)
T ss_dssp HHHHHHHHTCCCEEEECTTSCHHHH-HHHHHHHHHHTCEEEECSSCHHHH---HHHTTC
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHH-HHHHHHHHHcCCcEEEecCCHHHH---HHHhCC
Confidence 3456666777999999999766543 3445677788999985 6666554 455564
No 76
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=32.57 E-value=56 Score=29.59 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
+.+.+.+.++++||+.. +..-+.+.|.+.||.++.......-+-+.....++
T Consensus 68 ~a~~L~~~gv~vVI~g~------IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIVRG------IGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEECSC------CCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEECC------CCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 44556678999999986 79999999999999999876543334444444443
No 77
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=32.40 E-value=86 Score=28.29 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
..+.|.+.++++||+. +| .+-+...|.+.||-++.......-+-|.....++
T Consensus 68 ~a~~L~~~gv~vVI~g-~I-----G~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GI-----GRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEECS-CC-----CHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CC-----CHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 4566677899999995 68 8999999999999999876654445555555444
No 78
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=32.05 E-value=42 Score=29.88 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
.+.+.+-++.+|+++.|.+...+-.....++.+++||.+...++.+|. +++|-
T Consensus 40 ~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG---~a~Gk 92 (122)
T 3o85_A 40 LKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALG---RACNV 92 (122)
T ss_dssp HHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHH---HHTTC
T ss_pred HHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH---HHhCC
Confidence 455556678999999987654443445667778889877666555444 44454
No 79
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.07 E-value=66 Score=28.22 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCCe
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 167 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa~ 167 (841)
...+.+.+.++++||+.. +..-+.+.|.+.||.++.......-+-+.....++
T Consensus 54 ~~~~~L~~~gv~~vi~~~------iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYG------IGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECSB------CCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEECC------CCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 345556678999999986 79999999999999999865433333444444443
No 80
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=30.99 E-value=1.2e+02 Score=26.60 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=39.0
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
..+.|...||++|||. .| .+-+...|.+.||-++.......-+-|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SP-----GPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CS-----SHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-Cc-----CHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 3555668899999996 58 9999999999999999865544445555555444
No 81
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.40 E-value=1e+02 Score=26.88 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 554 ~~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
...+.|...++++||+. .| .+-+...|.+.||-++.......-+-|.....+.
T Consensus 54 ~~~~~L~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GI-----GRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BC-----CHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CC-----CHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 34566678899999996 68 9999999999999999865544445555555444
No 82
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=30.23 E-value=55 Score=26.79 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=36.4
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
.++.+.+-.+.+||.+.+++++ +-.....++.+++|-.+...++.+|- +++|-
T Consensus 19 v~kai~~gkaklViiA~D~~~~-~~~~i~~lc~~~~Ip~~~v~sk~eLG---~a~Gk 71 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADPI-LTSSVVSLAEDQGISVSMVESMKKLG---KACGI 71 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHH---HHHTC
T ss_pred HHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHH---HHhCC
Confidence 3445555668899999999552 33344567788999999888886654 44553
No 83
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=30.12 E-value=30 Score=30.44 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHH
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia 161 (841)
..+.+.+-.+.+|+++.|.+...+-.....++.++|||.+...++.+|.+.+
T Consensus 33 v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~ 84 (113)
T 3jyw_G 33 VVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLV 84 (113)
T ss_dssp HHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHH
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 3444555678999999996554333445567779999999887777666554
No 84
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=30.01 E-value=95 Score=27.10 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecc-ccchhHHHHH
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD-IEREDIEFVC 161 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~-~~~~~L~~ia 161 (841)
+.++.|.+-.+.+||++.|.+.. +-....+++..++||++.. .++.+|...|
T Consensus 33 ~t~kai~~gkakLVilA~D~~~~-~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~ 85 (112)
T 3iz5_f 33 TVLKTLRSSLGKLIILANNCPPL-RKSEIETYAMLAKISVHHFHGNNVDLGTAC 85 (112)
T ss_dssp HHHHHHHTTCCSEEEECSCCCHH-HHHHHHHHHHHTTCCEECCCCTTCTHHHHH
T ss_pred HHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEeCCCHHHHHHHh
Confidence 34566667789999999997654 4555677788999999987 6777776655
No 85
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=29.77 E-value=1.2e+02 Score=26.68 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLN 610 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG 610 (841)
.++.|.+-.+.+||++.++++.-+-.....+|.+++|..+...++.+|-+ ++|
T Consensus 28 v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~---a~g 80 (121)
T 2lbw_A 28 VVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGA---AGA 80 (121)
T ss_dssp HHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHH---HHT
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHH---HhC
Confidence 45555666789999999995533333455788899999988888866554 455
No 86
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=29.45 E-value=79 Score=27.41 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecc-ccchhHHHHHHHhCC
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD-IEREDIEFVCKTLNT 166 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~-~~~~~L~~ia~~tGa 166 (841)
..+.+.+-.+.+||++.|.+.+. -....+++..++||++.. .++.+ +..++|-
T Consensus 29 v~kai~~gka~lViiA~D~~~~~-~~~l~~~c~~~~Vp~~~~~~sk~e---LG~a~G~ 82 (110)
T 3cpq_A 29 TIKFVKHGEGKLVVLAGNIPKDL-EEDVKYYAKLSNIPVYQHKITSLE---LGAVCGK 82 (110)
T ss_dssp HHHHHHTTCCSEEEECTTCBHHH-HHHHHHHHHHTTCCEEECCSCHHH---HHHHTTC
T ss_pred HHHHHHcCCceEEEEeCCCCHHH-HHHHHHHHHHcCCCEEEEcCCHHH---HHHHhCC
Confidence 34555566789999999974333 444556777889998766 55544 4455564
No 87
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=27.95 E-value=97 Score=26.28 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecc-ccchhHHHHHHHhCC
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD-IEREDIEFVCKTLNT 166 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~-~~~~~L~~ia~~tGa 166 (841)
..+.+.+-++.+||++.|.+ +-+-....+++..++||.+.. .++.+| ..++|-
T Consensus 24 v~kai~~gka~lViiA~D~~-~~~~~~l~~~c~~~~vp~~~~~~s~~eL---G~a~G~ 77 (101)
T 1w41_A 24 SIQYAKMGGAKLIIVARNAR-PDIKEDIEYYARLSGIPVYEFEGTSVEL---GTLLGR 77 (101)
T ss_dssp HHHHHHHTCCSEEEEETTSC-HHHHHHHHHHHHHHTCCEEEESSCHHHH---HHHTTC
T ss_pred HHHHHHcCCCcEEEEeCCCC-HHHHHHHHHHHHhcCCCEEEecCCHHHH---HHHhCC
Confidence 34555666799999999843 334445566777889998764 555544 455564
No 88
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=27.22 E-value=78 Score=31.56 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc------chhHHHHHHHhCCe
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE------REDIEFVCKTLNTR 167 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~------~~~L~~ia~~tGa~ 167 (841)
+|.|.+.+|+|||.... ......+.|.+.+|+++.-.. .+.++.++.++|..
T Consensus 53 ~E~i~~l~PDLIi~~~~-----~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVST-----IKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGG-----GHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCc-----cCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 67788899999998764 334566788888988664211 33488888888864
No 89
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=26.82 E-value=43 Score=30.73 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHh--hhheeeeccccchhHHHHH
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD--KIKVLVVKDIEREDIEFVC 161 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~--~~~i~~v~~~~~~~L~~ia 161 (841)
+.++.|.+-.+.+++++.+.+...+-.+...++. .++||.+.-.++.+|.+.|
T Consensus 47 et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~ 101 (143)
T 3u5c_M 47 ESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWA 101 (143)
T ss_dssp HHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHS
T ss_pred HHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHh
Confidence 3455566667899999999776677778888899 9999999887665555444
No 90
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=26.74 E-value=56 Score=29.59 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
++.+.+-++.+|+++.|.+..-+-.....++.++|||.+...++.+ +.+++|-
T Consensus 41 ~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e---LG~a~G~ 93 (134)
T 2ale_A 41 TKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVA---LGRACGV 93 (134)
T ss_dssp HHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCC
Confidence 4555566788999998866532233445677788888766655544 4444443
No 91
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=26.50 E-value=1.2e+02 Score=26.46 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=38.3
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCCh-hHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIER-EDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~-~~L~~ia~~tGa 611 (841)
..+.|...+|++|||. +| .+-+...|.+.||-++..... ..-+-|.....+
T Consensus 59 ~~~~l~~~gv~~vi~~-~i-----G~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g 110 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YV-----GPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDG 110 (120)
T ss_dssp HHHHHHHHTEEEEECS-CC-----CHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEC-CC-----CHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcC
Confidence 4566667899999996 58 999999999999999987654 444445554444
No 92
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=26.26 E-value=1.2e+02 Score=26.76 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
..+.+.+-.+.+||.+.++++.-+-.....+|.+++|-.+...++.+| ..++|-
T Consensus 37 v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eL---G~a~G~ 90 (120)
T 1vq8_F 37 TTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDL---GHAAGL 90 (120)
T ss_dssp HHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHH---HHHhCC
Confidence 345555566889999999976544445567888899988877777654 455554
No 93
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=25.89 E-value=1.1e+02 Score=27.09 Aligned_cols=54 Identities=6% Similarity=0.157 Sum_probs=37.9
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
..+.|.+-.+.+||.+.++++.-+-.....+|.+++|..+...++.+| ..++|-
T Consensus 37 v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eL---G~a~G~ 90 (120)
T 1xbi_A 37 VTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDL---GKAAGL 90 (120)
T ss_dssp HHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHH---HHHhCC
Confidence 445555667899999999966544445567888889988777777654 455553
No 94
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=25.60 E-value=1.1e+02 Score=26.14 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeec-cccchhHHHHHHHhCC
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK-DIEREDIEFVCKTLNT 166 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~-~~~~~~L~~ia~~tGa 166 (841)
+.++.|.+-++.+||++.|.+... -....+++..++||++. ..++.+ +..++|-
T Consensus 29 ~v~kai~~gkaklVilA~D~~~~~-~~~i~~~c~~~~ip~~~~~~s~~e---LG~A~Gk 83 (105)
T 3u5e_c 29 STVKSLRQGKSKLIIIAANTPVLR-KSELEYYAMLSKTKVYYFQGGNNE---LGTAVGK 83 (105)
T ss_dssp HHHHHHHTTCCSEEEECTTSCHHH-HHHHHHHHHHHTCEEEECSSCHHH---HHHHTTC
T ss_pred HHHHHHHcCCceEEEEeCCCCHHH-HHHHHHHHHHcCCCEEEeCCCHHH---HHHHhCC
Confidence 345666667799999999976544 34556777889999984 555544 4555564
No 95
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=24.18 E-value=1.2e+02 Score=26.91 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=36.9
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
..+.|.+-.+.+||.+.++++.-+-.....+|.+++|-.+...++.+ |..++|-
T Consensus 36 v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~e---LG~a~G~ 89 (124)
T 2fc3_A 36 TTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKR---LGEAAGI 89 (124)
T ss_dssp HHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHhCC
Confidence 34445555688999999996654444456788888988877777755 4455553
No 96
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=24.17 E-value=73 Score=27.84 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccc
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIER 154 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~ 154 (841)
..+.+.+.++++||+.. +..-+.+.|.+.||-++.....
T Consensus 59 ~~~~l~~~gv~~vi~~~------iG~~a~~~L~~~GI~v~~~~~g 97 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTGY------VGPKAFQALQAAGIKVGQDLEG 97 (120)
T ss_dssp HHHHHHHHTEEEEECSC------CCHHHHHHHHHTTCEEECCCTT
T ss_pred HHHHHHHCCCCEEEECC------CCHhHHHHHHHCCCEEEEcCCC
Confidence 44555668999999986 7999999999999999987554
No 97
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=24.10 E-value=96 Score=26.37 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
..+.+.+-.+.+||.+.+.++..... ..++|..++|..+...++.+ |..++|-.
T Consensus 27 v~kai~~gka~lViiA~D~~~~~~~~-i~~~c~~~~vp~~~~~s~~e---LG~A~Gk~ 80 (101)
T 3v7q_A 27 VIKEIRNARAKLVLLTEDASSNTAKK-VTDKCNYYKVPYKKVESRAV---LGRSIGKE 80 (101)
T ss_dssp HHHHHHTTCCSEEEEETTSCHHHHHH-HHHHHHHTTCCEEEESCHHH---HHHHTTSS
T ss_pred hHHHHhcCceeEEEEeccccccchhh-hcccccccCCCeeeechHHH---HHhhhCcc
Confidence 34455556689999999995553333 25667789999888877765 55666654
No 98
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=23.48 E-value=1.1e+02 Score=26.86 Aligned_cols=54 Identities=7% Similarity=0.131 Sum_probs=37.5
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
..+.+.+-.+.+||.+.++++.-+-.....+|.+++|..+...++.+| ..++|-
T Consensus 35 v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eL---G~a~G~ 88 (119)
T 1rlg_A 35 TTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDL---GRAVGI 88 (119)
T ss_dssp HHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHH---HHHTTC
T ss_pred HHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHH---HHHhCC
Confidence 344444455789999999977654555667888889988777777654 455554
No 99
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=22.68 E-value=89 Score=31.49 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 109 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 109 ~~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
..++.|.+-.+.+||++.|.+...+......++.++||+.+..-++.+ |..++|-
T Consensus 138 eV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~e---LG~A~Gk 192 (256)
T 3izc_H 138 HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKAR---LGTLVNQ 192 (256)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCC
Confidence 345566667789999999976655566667788889999876555544 4455564
No 100
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=21.89 E-value=1.8e+02 Score=26.02 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCCc
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTR 612 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ 612 (841)
..+.|...++++|||. +| .+-+...|.+ ||-++.......-+-+.....+.
T Consensus 71 ~~~~L~~~gv~~VI~g-~i-----G~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 71 MLKSALDHGANALVLS-EI-----GSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHTTCSEEEES-CC-----BHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEC-CC-----CHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 4566667899999994 68 8999999999 99999876534444455444443
No 101
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=21.76 E-value=2.2e+02 Score=29.86 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=50.2
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc------hhhhhHHHHHHHHHhh-----hheeeecccc--chh
Q psy8873 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS------ILRDAISDLAIHFLDK-----IKVLVVKDIE--RED 156 (841)
Q Consensus 90 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~------i~~~~v~~lal~~l~~-----~~i~~v~~~~--~~~ 156 (841)
..+|+.+..+++.=.+.+...++...+.|++.|.+..+ ++.+-..+.+..++.+ .+++++...+ ...
T Consensus 175 ~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~iih~~g~~~~~ 254 (348)
T 4ay7_A 175 IKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVTVLHICGNVNPI 254 (348)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEEEEECCSCCHHH
T ss_pred HHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCCcEEEecCCcHHH
Confidence 46677777776655566777778888899999888765 3344455555555543 2334443333 234
Q ss_pred HHHHHHHhCCeEee
Q psy8873 157 IEFVCKTLNTRPIA 170 (841)
Q Consensus 157 L~~ia~~tGa~~i~ 170 (841)
+++++. +|+.+++
T Consensus 255 l~~~~~-~g~d~i~ 267 (348)
T 4ay7_A 255 LSDMAD-CGFEGLS 267 (348)
T ss_dssp HHHHHT-SCCSEEE
T ss_pred HHHHHH-hcccccc
Confidence 777776 6888775
No 102
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.25 E-value=1.3e+02 Score=25.36 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecc-ccchhHH
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD-IEREDIE 158 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~-~~~~~L~ 158 (841)
.++.+.+-++.+||++.|.+.+ +-....+++..++||++.. .++.+|.
T Consensus 23 v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 23 TIRLAKTGGAKLIIVAKNAPKE-IKDDIYYYAKLSDIPVYEFEGTSVELG 71 (99)
T ss_dssp HHHHHHHTCCSEEEEECCCCHH-HHHHHHHHHHHTTCCEEEECCCSCGGG
T ss_pred HHHHHHcCCccEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHH
Confidence 4455666779999999994433 3444556677888887655 4555544
No 103
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=21.19 E-value=92 Score=32.29 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeecccc--------------------------chhHHHHHHHh
Q psy8873 111 VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIE--------------------------REDIEFVCKTL 164 (841)
Q Consensus 111 l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~--------------------------~~~L~~ia~~t 164 (841)
+|+|.+.+|+|||.... ...-..+.|.+.||+++.... .+.++.+++++
T Consensus 77 ~E~i~~l~PDlIi~~~~-----~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~l 151 (326)
T 3psh_A 77 IESLLALKPDVVFVTNY-----APSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVF 151 (326)
T ss_dssp HHHHHHTCCSEEEEETT-----CCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCEEEEeCC-----CChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHc
Confidence 68899999999998753 234456778888998875321 24588889988
Q ss_pred CCe
Q psy8873 165 NTR 167 (841)
Q Consensus 165 Ga~ 167 (841)
|..
T Consensus 152 g~e 154 (326)
T 3psh_A 152 EKK 154 (326)
T ss_dssp TCH
T ss_pred CCH
Confidence 865
No 104
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=20.73 E-value=1.5e+02 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=36.9
Q ss_pred HHHHHHHcCCcEEEecCCcccccccHHHHHHHHhcCcEEEecCChhHHHHHHHHcCC
Q psy8873 555 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611 (841)
Q Consensus 555 ~v~~i~~~g~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa 611 (841)
..+.+.+-.+.+||.+.+.++.-+-.....+|.+++|..+...++.+ |.+++|-
T Consensus 39 v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e---LG~a~Gk 92 (122)
T 3o85_A 39 ALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNA---LGRACNV 92 (122)
T ss_dssp HHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHH---HHHHhCC
Confidence 34444455688999999996544333456778889998887777755 5555664
No 105
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=20.59 E-value=1.2e+02 Score=27.28 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCeEEEecchhhhhHHHHHHHHHhhhheeeeccccchhHHHHHHHhCC
Q psy8873 110 IVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 166 (841)
Q Consensus 110 ~l~~i~~~~~~lvi~~~~i~~~~v~~lal~~l~~~~i~~v~~~~~~~L~~ia~~tGa 166 (841)
..+.+.+.++++||+.+ +..-+.+.|.+ ||.++.......-+-+.....+
T Consensus 71 ~~~~L~~~gv~~VI~g~------iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G 120 (136)
T 2re2_A 71 MLKSALDHGANALVLSE------IGSPGFNFIKN-KMDVYIVPEMPVADALKLILEG 120 (136)
T ss_dssp HHHHHHHTTCSEEEESC------CBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECC------CCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhC
Confidence 44555667999999987 79999999999 9999987553333333333333
Done!