RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8873
(841 letters)
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 766 bits (1980), Expect = 0.0
Identities = 333/483 (68%), Positives = 398/483 (82%), Gaps = 34/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVV++AG+LL A E LL KGIHPT IS++FQ AA K VEIL
Sbjct: 66 MLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILD 125
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
MS P+ L DRE+LIKSA TSLNSKVVSQ +SLLAPIAVDAVLKV++P TNVDLKDI+
Sbjct: 126 SMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIR 185
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANV-NGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+++KLGGT+EDTELVDGLVFTQK++ GP R+EKAKIGLIQFC+SPPKTDMD+ +VV+
Sbjct: 186 IVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVN 245
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY+ MDR+L+EER YILN+ K+IKK+GCNVLL+QKSILRDA+SDLA+HFL K+K++VVKD
Sbjct: 246 DYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKD 305
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
IERE+IEF+CKT+ +P+AS+DHF + L SADLVEE+ G+ + VKI+G++NPG+T+T+
Sbjct: 306 IEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTI 365
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
+VRGSNKLVLDEA RSLHDALCV+RCLVK+
Sbjct: 366 LVRGSNKLVLDEAERSLHDALCVIRCLVKK------------------------------ 395
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
RALI GGGAPEIE++L+L+++A T++G++ YC RAFA ALEVIP TLAENAGLNPIS
Sbjct: 396 ---RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPIS 452
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
VTELRNRHAQGE GINVRKGAITNILEENVVQPLLVSTSAITL+TETVR ILKIDDI
Sbjct: 453 IVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDI 512
Query: 837 VNT 839
V
Sbjct: 513 VLA 515
Score = 496 bits (1279), Expect = e-168
Identities = 203/276 (73%), Positives = 249/276 (90%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
MD+ +VV+DY+ MDR+L+EER YILN+ K+IKK+GCNVLL+QKSILRDA+SDLA+HFL K
Sbjct: 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK 297
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+K++VVKDIERE+IEF+CKT+ +P+AS+DHF + L SADLVEE+ G+ + VKI+G++
Sbjct: 298 LKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVK 357
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NPG+T+T++VRGSNKLVLDEA RSLHDALCV+RCLVK+RALI GGGAPEIE++L+L+++A
Sbjct: 358 NPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWA 417
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T++G++ YC RAFA ALEVIP TLAENAGLNPIS VTELRNRHAQGE GINVRKGAI
Sbjct: 418 RTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAI 477
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
TNILEENVVQPLLVSTSAITL+TETVR ILKIDDI+
Sbjct: 478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513
Score = 130 bits (329), Expect = 9e-32
Identities = 53/67 (79%), Positives = 57/67 (85%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
DK K D+R SNI AAKAVADAIRTSLGPRGMDKMIQ GEV ITNDGATILKQM+V+
Sbjct: 1 TDKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVL 60
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 61 HPAAKML 67
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 704 bits (1819), Expect = 0.0
Identities = 323/483 (66%), Positives = 398/483 (82%), Gaps = 34/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AG+LL A E+LL+KGIHPT IS++FQ AA + ++IL
Sbjct: 67 MLVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEAIKILD 126
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EMS P+ L+DRE L+KSA TSL+SKVVSQ +SLLAP+AVDAVLKV++P+ NVDL DIK
Sbjct: 127 EMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVDLNDIK 186
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNG-PKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
V++KLGGT++DTEL++GLVFTQK++ G P R+EKAKIGLIQF ISPPKTDM+++++V+
Sbjct: 187 VVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQISPPKTDMENQIIVN 246
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY+ MDRVLKEERAYILNIVK+IKK GCNVLL+QKSILRDA++DLA+HFL K+K++VVKD
Sbjct: 247 DYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKD 306
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
IERE+IEF+CKT+ +PIAS+DHF + L SA+LVEE+ + + +KI+GIQN G+T+TV
Sbjct: 307 IEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTV 366
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV+DEA RSLHDALCV+RCLVK+
Sbjct: 367 VVRGSNKLVIDEAERSLHDALCVIRCLVKK------------------------------ 396
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
R LIAGGGAPEIE++ +L+KYA T+ G+++YC RAFA ALEVIP TLAENAGLNPI
Sbjct: 397 ---RGLIAGGGAPEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIK 453
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
VTELRNRHA GE T GI+VRKG ITN+LEE+V+QPLLV+TSAITL++ETVRSILKIDDI
Sbjct: 454 VVTELRNRHANGEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDI 513
Query: 837 VNT 839
V T
Sbjct: 514 VFT 516
Score = 458 bits (1180), Expect = e-153
Identities = 212/343 (61%), Positives = 268/343 (78%), Gaps = 3/343 (0%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGM--DKMIQASNGEVTITNDGATILKQMNV 76
D A ++ ++I K + I + G+ + S G T L Q
Sbjct: 173 DPENAKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASKSAGGPTRIEKAKIGLIQFQ- 231
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
I P M+++++V+DY+ MDRVLKEERAYILNIVK+IKK GCNVLL+QKSILRDA++DL
Sbjct: 232 ISPPKTDMENQIIVNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDL 291
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRF 196
A+HFL K+K++VVKDIERE+IEF+CKT+ +PIAS+DHF + L SA+LVEE+ + +
Sbjct: 292 ALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEVDSDGGKI 351
Query: 197 VKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELS 256
+KI+GIQN G+T+TVVVRGSNKLV+DEA RSLHDALCV+RCLVK+R LIAGGGAPEIE++
Sbjct: 352 IKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIA 411
Query: 257 LKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGI 316
+L+KYA T+ G+++YC RAFA ALEVIP TLAENAGLNPI VTELRNRHA GE T GI
Sbjct: 412 RRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHANGEKTAGI 471
Query: 317 NVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+VRKG ITN+LEE+V+QPLLV+TSAITL++ETVRSILKIDDI+
Sbjct: 472 SVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDIV 514
Score = 127 bits (320), Expect = 1e-30
Identities = 53/68 (77%), Positives = 58/68 (85%)
Query: 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
F+DK K D+R SNI AAKAVADAIRTSLGP+GMDKMIQ GEV ITNDGATILKQM V
Sbjct: 1 FQDKDKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAV 60
Query: 77 IHPAAKMM 84
+HPAAKM+
Sbjct: 61 LHPAAKML 68
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 434 bits (1118), Expect = e-144
Identities = 183/480 (38%), Positives = 257/480 (53%), Gaps = 82/480 (17%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE++K+QD E GDGTT+VV++AG LL+ AEKLL GIHPT I ++KA K +EIL
Sbjct: 66 LLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILK 125
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E++ PI + DRE L+K A TSLNSK+VS L + VDAVLKV + +VDL I+
Sbjct: 126 EIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKE--NGDVDLGVIR 183
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
V +K GG++ED+ELV G+VF + + PKR+E AKI L+ + VV++
Sbjct: 184 VEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY--------VVIA- 234
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
I D A+H+L K+ ++ V+ +
Sbjct: 235 -------------------------------------EKGIDDEALHYLAKLGIMAVRRV 257
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
+ED+E + K ++ L+ PE L +A LVEE G+ ++ I G + T++
Sbjct: 258 RKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGK-VATIL 316
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ ++ LDEA RSLHDALC VR V+ ++ GGGA EIELS L + A T+ G +
Sbjct: 317 LRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQL 376
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
A FA ALEVIP TLAENAGL+PI
Sbjct: 377 GIEA---------------------------------FADALEVIPRTLAENAGLDPIEV 403
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
VT+LR +HA+G G +V G I ++ E ++ PL V A+ +TE IL IDDI+
Sbjct: 404 VTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDII 463
Score = 274 bits (704), Expect = 2e-83
Identities = 109/300 (36%), Positives = 158/300 (52%), Gaps = 35/300 (11%)
Query: 95 AMDRVLKEERAYILNIVKQIKKAG-----------------------------CNVLLVQ 125
A+ +V KE L +++ KK G +LL+
Sbjct: 166 AVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLD 225
Query: 126 KS-----ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL 180
I I D A+H+L K+ ++ V+ + +ED+E + K ++ L+ PE L
Sbjct: 226 CKLEYVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDL 285
Query: 181 SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK 240
+A LVEE G+ ++ I G + T+++RG+ ++ LDEA RSLHDALC VR V+
Sbjct: 286 GTAGLVEETKIGDEKYTFIEGCKGGK-VATILLRGATEVELDEAERSLHDALCAVRAAVE 344
Query: 241 QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTV 300
++ GGGA EIELS L + A T+ G + AFA ALEVIP TLAENAGL+PI V
Sbjct: 345 DGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVV 404
Query: 301 TELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360
T+LR +HA+G G +V G I ++ E ++ PL V A+ +TE IL IDDI+V
Sbjct: 405 TKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
Score = 111 bits (281), Expect = 7e-26
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 51/230 (22%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K++ + R SNI AAKA+ADA++T+LGP+GMDKM+ S G+ TITNDGATILK++ V
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60
Query: 78 HPAAKMMDHKVVVSDYSAMDR----------VLKEERAYILNIVKQIKKAGCNVLLVQK- 126
HPAAK++ V V+ + D VL E ++K+ +K L+
Sbjct: 61 HPAAKLL---VEVA--KSQDDEVGDGTTTVVVLAGE------LLKEAEK------LLAAG 103
Query: 127 ---SILRDAI---SDLAIHFLDKIKVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEH 179
+ + + A+ L +I V + + +RE++ V T LN++ ++ D FL E
Sbjct: 104 IHPTEIIRGYEKAVEKALEILKEIAVPIDVE-DREELLKVATTSLNSKLVSGGDDFLGEL 162
Query: 180 LSSA-----DLVEEIPAGNSRFVKISGIQNPGRTL--TVVVRGSNKLVLD 222
+ A ++ G R K G +L + +V G +V D
Sbjct: 163 VVDAVLKVGKENGDVDLGVIRVEKK-----KGGSLEDSELVVG---MVFD 204
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 396 bits (1019), Expect = e-129
Identities = 188/494 (38%), Positives = 281/494 (56%), Gaps = 47/494 (9%)
Query: 352 ILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDA 404
ILK DI LVE++K QD E GDGTT+ V++AG LLE AE LL + IHPT I +
Sbjct: 60 ILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEG 119
Query: 405 FQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVN 464
++ AA K +E+L E++ + D++ L K A TSL K LA + VDAVL+V
Sbjct: 120 YRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAE 179
Query: 465 PQRD-TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCIS 523
+ VDL +IK+ +K GG+V+DTEL+ G+V ++ + PKRVE AKI L+ +
Sbjct: 180 KRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLE 239
Query: 524 PPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAI 583
KT++D K+ ++ + L++E A + +V +I G NV+ QK I DLA
Sbjct: 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKG-----IDDLAQ 294
Query: 584 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK 643
H+L K +L V+ +++ D+E + + + + ++D PE L A+LVEE G+ + V
Sbjct: 295 HYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVF 354
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703
+ G +NP + +T+++RG + V+DE R+L DAL VV ++ ++AGGGA EIEL+ +
Sbjct: 355 VEGCKNP-KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKR 413
Query: 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 763
L +YA +V G R +A AFA ALE IP
Sbjct: 414 LREYARSVGG------REQLA---------------------------VEAFADALEEIP 440
Query: 764 LTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 823
TLAENAGL+PI T+ ELR H +G G++V G + ++LE+ V++PL V AI +
Sbjct: 441 RTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSA 500
Query: 824 TETVRSILKIDDIV 837
TE IL+IDD++
Sbjct: 501 TEAATMILRIDDVI 514
Score = 241 bits (618), Expect = 9e-71
Identities = 106/275 (38%), Positives = 166/275 (60%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D K+ ++ + L++E A + +V +I G NV+ QK I DLA H+L K
Sbjct: 246 DAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGI-----DDLAQHYLAKA 300
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
+L V+ +++ D+E + + + + ++D PE L A+LVEE G+ + V + G +N
Sbjct: 301 GILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKN 360
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE R+L DAL VV ++ ++AGGGA EIEL+ +L +YA
Sbjct: 361 P-KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYAR 419
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
+V G + AFA ALE IP TLAENAGL+PI T+ ELR H +G G++V G +
Sbjct: 420 SVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVV 479
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE+ V++PL V AI +TE IL+IDD++
Sbjct: 480 DMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVI 514
Score = 101 bits (253), Expect = 3e-22
Identities = 41/60 (68%), Positives = 52/60 (86%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D + NI AAKAVA+A+RT+LGP+GMDKM+ S G+VTITNDGATILK+M++ HPAAKM+
Sbjct: 15 DAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKML 74
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 387 bits (997), Expect = e-126
Identities = 172/480 (35%), Positives = 266/480 (55%), Gaps = 49/480 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE +K+QD E GDGTT+ V++AG LLE AEKL+ GIHPT I ++ A ++ L
Sbjct: 47 LLVEAAKSQDEEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALE 106
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E+S P++ D E+L+ A TSLNSK+ S+++ LL + VDAVL ++ D+ +I
Sbjct: 107 ELSIPVS-DDDEDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIE-----KFDVGNIG 160
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
VI+ GG++ED+EL++G+V + + + PKR+E KI L+ + KT+ +
Sbjct: 161 VIKIEGGSLEDSELIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEKVIISTAEE 220
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+R+L+ E +L ++++I AG N++++QK I DLA+HFL K +L ++ +
Sbjct: 221 L---ERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGI-----DDLALHFLAKNGILALRRV 272
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ED+E + K ++SLD P+ L SA VEE G + I G + T++
Sbjct: 273 KKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIGEDKTTFIEGCLSGK-VATIL 331
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ LDE R++ DAL V+ +K ++ GGGA E+ELS L +YA +VSG +
Sbjct: 332 LRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELSRALREYAKSVSGKEQL 391
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
A FA+ALEVIP TLAENAGL+PI
Sbjct: 392 GIEA---------------------------------FAEALEVIPRTLAENAGLDPIEV 418
Query: 778 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
+ +L+ H +G GI+ G I ++ E ++ PL V SA+ + E IL ID I+
Sbjct: 419 LAKLKAAHKKGN-NLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQII 477
Score = 247 bits (632), Expect = 5e-73
Identities = 100/285 (35%), Positives = 156/285 (54%), Gaps = 10/285 (3%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDL 136
+ + +R+L+ E +L ++++I AG N++++QK I DL
Sbjct: 205 LEYEKTEKVIISTAEEL---ERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGI-----DDL 256
Query: 137 AIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRF 196
A+HFL K +L ++ +++ED+E + K ++SLD P+ L SA VEE G +
Sbjct: 257 ALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIGEDKT 316
Query: 197 VKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELS 256
I G + T+++RG+ LDE R++ DAL V+ +K ++ GGGA E+ELS
Sbjct: 317 TFIEGCLSGK-VATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELS 375
Query: 257 LKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGI 316
L +YA +VSG + AFA+ALEVIP TLAENAGL+PI + +L+ H +G GI
Sbjct: 376 RALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKGN-NLGI 434
Query: 317 NVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361
+ G I ++ E ++ PL V SA+ + E IL ID I+
Sbjct: 435 DADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIKA 479
Score = 82.7 bits (205), Expect = 2e-16
Identities = 27/48 (56%), Positives = 41/48 (85%)
Query: 37 VADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+ADA++T+LGP+G +KM+ G++TITNDGATILK++ + HPAAK++
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLL 48
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 367 bits (945), Expect = e-118
Identities = 195/497 (39%), Positives = 288/497 (57%), Gaps = 49/497 (9%)
Query: 351 SILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403
+ILK DI LVE++K QD E GDGTT+ V++AG LLE AE LL + IHPT I +
Sbjct: 60 TILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIE 119
Query: 404 AFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVVSQQA-SLLAPIAVDAVLKV 462
++KAA K +EI+ E++T I+ DR+ L K A TSL SK ++ A LA + V+AV +V
Sbjct: 120 GYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQV 179
Query: 463 VNPQRD--TNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520
+ D VDL +IK+++K GG+++DTELV+G+V ++ + PKRVE AKI L+
Sbjct: 180 AELRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDA 239
Query: 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISD 580
+ KT++D ++ ++D + + L +E A + +V +I AG NV++ QK I D
Sbjct: 240 PLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKG-----IDD 294
Query: 581 LAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSR 640
+A H+L K +L V+ +++ DIE + + R ++S+D L A LVEE G +
Sbjct: 295 VAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDK 354
Query: 641 FVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIEL 700
V + G +NP + +T+++RG + V+DE RSL DAL VV ++ ++AGGGA EIE+
Sbjct: 355 MVFVEGCKNP-KAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEI 413
Query: 701 SLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALE 760
+L+L YA + G R +A AFA ALE
Sbjct: 414 ALRLRSYARKIGG------REQLA---------------------------IEAFADALE 440
Query: 761 VIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 820
IP LAENAGL+PI + ELR +H +G GINV G I ++LE V++PL V AI
Sbjct: 441 EIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAI 500
Query: 821 TLSTETVRSILKIDDIV 837
+TE IL+IDD++
Sbjct: 501 KSATEAATMILRIDDVI 517
Score = 229 bits (586), Expect = 3e-66
Identities = 108/275 (39%), Positives = 163/275 (59%), Gaps = 6/275 (2%)
Query: 85 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 144
D ++ ++D + + L +E A + +V +I AG NV++ QK I D+A H+L K
Sbjct: 249 DAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGI-----DDVAQHYLAKA 303
Query: 145 KVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN 204
+L V+ +++ DIE + + R ++S+D L A LVEE G + V + G +N
Sbjct: 304 GILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDKMVFVEGCKN 363
Query: 205 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 264
P + +T+++RG + V+DE RSL DAL VV ++ ++AGGGA EIE++L+L YA
Sbjct: 364 P-KAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRSYAR 422
Query: 265 TVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 324
+ G + AFA ALE IP LAENAGL+PI + ELR +H +G GINV G I
Sbjct: 423 KIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIE 482
Query: 325 NILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++LE V++PL V AI +TE IL+IDD++
Sbjct: 483 DMLELGVIEPLRVKEQAIKSATEAATMILRIDDVI 517
Score = 97.8 bits (244), Expect = 4e-21
Identities = 41/67 (61%), Positives = 56/67 (83%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
++K D + +NI AAKAVA+A++++LGPRGMDKM+ S G+VTITNDGATILK+M++
Sbjct: 9 TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIE 68
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 69 HPAAKML 75
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 349 bits (898), Expect = e-111
Identities = 160/490 (32%), Positives = 257/490 (52%), Gaps = 57/490 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE++K QD EAGDGTT+ V++AG+LL+ AEKL+ GIHPT I ++ A K VE L
Sbjct: 69 LLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELK 128
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
E++ P++ ++ E +K A TS+ SK + + + V+AV KV DL I
Sbjct: 129 EIAKPVSDSEEE--LKIAITSVASKSANSD-EEIGELVVEAVEKV----GKEQSDLDGII 181
Query: 478 VIRKLGGTVEDTELVDGLVFTQK---SANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
++++ GG+ + E+V+G+VF + + KR+E KI L+ + K ++ ++V
Sbjct: 182 IVKESGGSETELEVVEGMVFDKGYLSPYFMP-DKRLENPKILLLDKKLEIKKPELPLEIV 240
Query: 535 VSDYSAMDRVLKEER-AYILNIVKQIKKAGCNVLLV-QKSILRDAISDLAIHFLDKIKVL 592
+S + + ++E + +V I + G NV++V I DLA +L+ I +L
Sbjct: 241 ISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPG-----IDDLAKAYLEDIAIL 295
Query: 593 VVKDIEREDI-EFVCKTLNTRPIASLDHFLPEHL--SSADLVEEIPAGNSRFVKISGIQN 649
+ +++ED+ E + K + ++ L L +A LVEE G+ K+ +
Sbjct: 296 TGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355
Query: 650 P-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 708
G T++VRG+ ++ LDE R + DAL VVR V++ ++ GGGA EIE +L+L +YA
Sbjct: 356 KAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYA 415
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAE 768
TV G G + AFA+ALE P LAE
Sbjct: 416 MTVEG--------------------------------GDEQLGIEAFARALEAPPRQLAE 443
Query: 769 NAGLNPISTVTELRNRHAQGETTTGINVRKGAIT-NILEENVVQPLLVSTSAITLSTETV 827
NAGL+PI +++LR+ HA T GI+ G +++E ++ PL V SA+ + E
Sbjct: 444 NAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAA 501
Query: 828 RSILKIDDIV 837
+L IDDI+
Sbjct: 502 GLLLTIDDII 511
Score = 221 bits (566), Expect = 2e-63
Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 15/293 (5%)
Query: 77 IHPAAKMMDHKVVVSDYSAMDRVLKEER-AYILNIVKQIKKAGCNVLLV-QKSILRDAIS 134
+ + ++V+S + + ++E + +V I + G NV++V I
Sbjct: 228 LEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI-----D 282
Query: 135 DLAIHFLDKIKVLVVKDIEREDI-EFVCKTLNTRPIASLDHFLPEHL--SSADLVEEIPA 191
DLA +L+ I +L + +++ED+ E + K + ++ L L +A LVEE
Sbjct: 283 DLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKT 342
Query: 192 GNSRFVKISGIQNP-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 250
G+ K+ + G T++VRG+ ++ LDE R + DAL VVR V++ ++ GGGA
Sbjct: 343 GDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGA 402
Query: 251 PEIELSLKLTKYADTVSGID-AYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQ 309
EIE +L+L +YA TV G D AFA+ALE P LAENAGL+PI +++LR+ HA
Sbjct: 403 AEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA- 461
Query: 310 GETTTGINVRKGAIT-NILEENVVQPLLVSTSAITLSTETVRSILKIDDILVE 361
T GI+ G +++E ++ PL V SA+ + E +L IDDI+
Sbjct: 462 -TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAA 513
Score = 93.8 bits (234), Expect = 6e-20
Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K++ D R SNI AA+A+ADA++T+LGP+G +KM+ S G++TITNDG TILK++ +
Sbjct: 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELE 63
Query: 78 HPAAKMM 84
HP AK++
Sbjct: 64 HPGAKLL 70
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 346 bits (890), Expect = e-110
Identities = 187/489 (38%), Positives = 273/489 (55%), Gaps = 47/489 (9%)
Query: 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414
I +LVELSK+QD E GDGTT VV++AG+LLE AEKLL +GIHP I+D +++A VE
Sbjct: 78 IAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVE 137
Query: 415 ILTEMST--PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNV 471
L E++ + ++E LI++A TSL SK+VS+ A IAVDAVL V + +R D N
Sbjct: 138 HLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNF 197
Query: 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH 531
+L IKV K+GG +EDT+LV G+V + ++ PK V+ AKI ++ PPK H
Sbjct: 198 EL--IKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKH 255
Query: 532 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
K+ ++ ++ + E+ Y +V+Q+K AG N+++ Q D A H L + +
Sbjct: 256 KLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQW-----GFDDEANHLLLQNGL 310
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQN 649
V+ + +IE + R + + PE L A LV EI G + + I G N
Sbjct: 311 PAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPN 370
Query: 650 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
+ +T+ +RG NK++++EA RSLHDALCVVR L++ ++ GGGA EI
Sbjct: 371 -SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEI----------- 418
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
C SL + K AD SGI+ Y RAFA ALE IPL LAEN
Sbjct: 419 -------SC---------------SLAVEKAADKCSGIEQYAMRAFADALESIPLALAEN 456
Query: 770 AGLNPISTVTELRNRH-AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828
+GLNPI T++E++ R + GI+ ++ E+ V + L+ I L+T+ V+
Sbjct: 457 SGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVK 516
Query: 829 SILKIDDIV 837
ILKIDD++
Sbjct: 517 MILKIDDVI 525
Score = 201 bits (513), Expect = 5e-56
Identities = 103/278 (37%), Positives = 157/278 (56%), Gaps = 9/278 (3%)
Query: 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145
HK+ ++ ++ + E+ Y +V+Q+K AG N+++ Q D A H L +
Sbjct: 255 HKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQW-----GFDDEANHLLLQNG 309
Query: 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQ 203
+ V+ + +IE + R + + PE L A LV EI G + + I G
Sbjct: 310 LPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCP 369
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +T+ +RG NK++++EA RSLHDALCVVR L++ ++ GGGA EI SL + K A
Sbjct: 370 N-SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAA 428
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH-AQGETTTGINVRKGA 322
D SGI+ Y RAFA ALE IPL LAEN+GLNPI T++E++ R + GI+
Sbjct: 429 DKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRG 488
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILV 360
++ E+ V + L+ I L+T+ V+ ILKIDD++V
Sbjct: 489 TNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526
Score = 99.7 bits (249), Expect = 1e-21
Identities = 37/67 (55%), Positives = 53/67 (79%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K + K + S+I AAK+VA+ +RTSLGPRGMDK++ + +GEVT+TNDGATIL++M+V
Sbjct: 16 KKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVD 75
Query: 78 HPAAKMM 84
H AK++
Sbjct: 76 HQIAKLL 82
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 300 bits (771), Expect = 1e-92
Identities = 181/489 (37%), Positives = 274/489 (56%), Gaps = 47/489 (9%)
Query: 355 IDDILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVE 414
I ++VELSK+QD E GDGTT VV++AG+LLE AE+LL KGIHP I++ F++AA VE
Sbjct: 82 IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVE 141
Query: 415 ILTEMSTPITLA--DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNV 471
L E+S I+ +RE LI++A TSL SK+VS+ A IAVDAVL V + +R D +
Sbjct: 142 HLEEISDEISADNNNREPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERRDVDF 201
Query: 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH 531
DL IKV K+GG++EDT+L+ G++ + ++ PK V+ AKI ++ PPK H
Sbjct: 202 DL--IKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKH 259
Query: 532 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
K+ +S ++ K E+ ++ IKK+G N+++ Q D A H L + +
Sbjct: 260 KLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQW-----GFDDEANHLLLQNDL 314
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQN 649
V+ + +++E + R + + L A LV EI G R + I +N
Sbjct: 315 PAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKN 374
Query: 650 PGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
+ +T+ +RG NK++++EA RS+HDALCVVR L+K ++ GGGA EI SL +++ AD
Sbjct: 375 -SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEAD 433
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
KY SG++ Y RAFA ALE IP+ LAEN
Sbjct: 434 -----------------------------KY----SGVEQYAIRAFADALETIPMALAEN 460
Query: 770 AGLNPISTVTELRNRH-AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVR 828
+GL+PI T++ L++ + G++ ++ E+ V + L+ I L+T+ VR
Sbjct: 461 SGLDPIGTLSTLKSLQLKEKNPNIGVDCLGYGTNDMKEQFVFETLIGKKQQILLATQLVR 520
Query: 829 SILKIDDIV 837
ILKIDD++
Sbjct: 521 MILKIDDVI 529
Score = 174 bits (443), Expect = 1e-46
Identities = 94/277 (33%), Positives = 153/277 (55%), Gaps = 9/277 (3%)
Query: 86 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 145
HK+ +S ++ K E+ ++ IKK+G N+++ Q D A H L +
Sbjct: 259 HKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQW-----GFDDEANHLLLQND 313
Query: 146 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAG--NSRFVKISGIQ 203
+ V+ + +++E + R + + L A LV EI G R + I +
Sbjct: 314 LPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCK 373
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +T+ +RG NK++++EA RS+HDALCVVR L+K ++ GGGA EI SL +++ A
Sbjct: 374 N-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAVSQEA 432
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH-AQGETTTGINVRKGA 322
D SG++ Y RAFA ALE IP+ LAEN+GL+PI T++ L++ + G++
Sbjct: 433 DKYSGVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKEKNPNIGVDCLGYG 492
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E+ V + L+ I L+T+ VR ILKIDD++
Sbjct: 493 TNDMKEQFVFETLIGKKQQILLATQLVRMILKIDDVI 529
Score = 92.9 bits (231), Expect = 1e-19
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K + K + + SNI AAK+VA +RTSLGP+GMDKM+ + +G++T+TNDGATIL QM+V
Sbjct: 20 KKRLKGLEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVD 79
Query: 78 HPAAKMM 84
+P AK+M
Sbjct: 80 NPIAKLM 86
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 270 bits (693), Expect = 2e-81
Identities = 156/502 (31%), Positives = 256/502 (50%), Gaps = 61/502 (12%)
Query: 352 ILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDA 404
ILK+ DI LV+++K+QD E GDGTTSVV++AG L+ A+ + G+HP I
Sbjct: 61 ILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120
Query: 405 FQKAAAKCVEILTEMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAVL 460
++KA +E + E++ I D RE L K AAT+LNSK+++ + A + VDAVL
Sbjct: 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVL 180
Query: 461 KVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNG----PKRVEKAKIG 516
+ D ++DL I + + GG++ED++LV+G+ F +K+ + G PK+ + KI
Sbjct: 181 SL-----DDDLDLDMIGIKKVPGGSLEDSQLVNGVAF-KKTFSYAGFEQQPKKFKNPKIL 234
Query: 517 LIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRD 576
L+ + + +V V D ++ E I + +++I K+G NV+L +
Sbjct: 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLP---- 290
Query: 577 AISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA 636
I DLA + + + ED++ V + ++ + + L + L EE
Sbjct: 291 -IGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQV 349
Query: 637 GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 696
G R+ +G +T T+++RG + ++EA RSLHDA+ +VR +K +++AGGGA
Sbjct: 350 GGERYNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAI 408
Query: 697 EIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFA 756
E+ELS KY L Y+ T++G AFA
Sbjct: 409 EMELS----KY-----------------------------LRDYSRTIAGKQQLVINAFA 435
Query: 757 QALEVIPLTLAENAGLNPISTVTELRNRHAQGETT-TGINVRKGAITNILEENVVQPLLV 815
+ALE+IP L +NAG + + +LR +HAQG G+++ I + E V +P LV
Sbjct: 436 KALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLV 495
Query: 816 STSAITLSTETVRSILKIDDIV 837
+A+T +TE IL +D+ +
Sbjct: 496 KINALTAATEAACLILSVDETI 517
Score = 165 bits (420), Expect = 1e-43
Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 7/270 (2%)
Query: 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 147
V V D ++ E I + +++I K+G NV+L + I DLA + +
Sbjct: 251 VRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPI-----GDLATQYFADRDIF 305
Query: 148 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 207
+ ED++ V + ++ + + L + L EE G R+ +G +
Sbjct: 306 CAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK-AK 364
Query: 208 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 267
T T+++RG + ++EA RSLHDA+ +VR +K +++AGGGA E+ELS L Y+ T++
Sbjct: 365 TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIA 424
Query: 268 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT-TGINVRKGAITNI 326
G AFA+ALE+IP L +NAG + + +LR +HAQG G+++ I +
Sbjct: 425 GKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADN 484
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKID 356
E V +P LV +A+T +TE IL +D
Sbjct: 485 FEAFVWEPSLVKINALTAATEAACLILSVD 514
Score = 98.1 bits (245), Expect = 3e-21
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI A +A+ADA+RT+LGPRGMDK+I G+VTI+NDGATILK ++++HPAAK +
Sbjct: 20 SNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTL 75
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 266 bits (682), Expect = 7e-80
Identities = 152/491 (30%), Positives = 247/491 (50%), Gaps = 63/491 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV++SK QD E GDGTTSV ++A LL AEKL+ + IHP TI + ++ A A E L
Sbjct: 73 VLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALL 132
Query: 418 EMSTPITL---ADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + A RE+L+ A T+L+SK+++Q A +AVDAVL++ + +L
Sbjct: 133 SSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRL-----KGSGNLD 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH--- 531
I++I+KLGG+++D+ L +G + K VN PKR+E AKI LI T MD
Sbjct: 188 AIQIIKKLGGSLKDSYLDEGFLL-DKKIGVNQPKRIENAKI-LIA------NTPMDTDKI 239
Query: 532 -----KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586
KV V + + + + E+ + N V++I K G N I R I +
Sbjct: 240 KIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCF-----INRQLIYNYPEQLF 294
Query: 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 646
++ ++ + + +E + ++ DH L + L+EEI G + ++ SG
Sbjct: 295 ADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSG 354
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
+ G T+V+RG+++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + +
Sbjct: 355 VAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEE 413
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
A G K + + AFA+AL +P +
Sbjct: 414 LAKKTPG-------------------------KKSLAIE--------AFAKALRQLPTII 440
Query: 767 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826
A+NAG + V +LR H G TT G+++RKG + ++ E + + V + ++E
Sbjct: 441 ADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEA 500
Query: 827 VRSILKIDDIV 837
IL++DDI+
Sbjct: 501 AEMILRVDDII 511
Score = 164 bits (417), Expect = 4e-43
Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 6/273 (2%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
KV V + + + + E+ + N V++I K G N I R I + +
Sbjct: 245 KVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCF-----INRQLIYNYPEQLFADAGI 299
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 206
+ ++ + + +E + ++ DH L + L+EEI G + ++ SG+ G
Sbjct: 300 MAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-G 358
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
T+V+RG+++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + + A
Sbjct: 359 EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKT 418
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
G + AFA+AL +P +A+NAG + V +LR H G TT G+++RKG + ++
Sbjct: 419 PGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDM 478
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
E + + V + ++E IL++DDI+
Sbjct: 479 KELGITESFKVKRQVLLSASEAAEMILRVDDII 511
Score = 71.2 bits (175), Expect = 9e-13
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASN--GEVTITNDGATILKQMNV 76
+ K R S+ A A+ D ++T+LGP+GMDK++Q+ G VT+TNDGATILK + V
Sbjct: 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGV 66
Query: 77 IHPAAKMM 84
+PAAK++
Sbjct: 67 DNPAAKVL 74
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 264 bits (676), Expect = 8e-79
Identities = 155/535 (28%), Positives = 264/535 (49%), Gaps = 62/535 (11%)
Query: 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID----DILVELSKAQD 367
T+ G N + N L++ L V+ A T+ E L++ +LV S+ Q+
Sbjct: 36 TSLGPNGMNKMVINHLDK-----LFVTNDAATILRE-----LEVQHPAAKLLVMASEMQE 85
Query: 368 IEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMS--TPITL 425
E GDGT V+++AG LL AE+L+ G+HP+ I ++ A K +E+L E+ L
Sbjct: 86 NEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDL 145
Query: 426 ADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGT 485
D++ LIK+ S++SK L+ + A V+ P+ N ++ +I+V++ +GG+
Sbjct: 146 RDKKELIKALKASISSKQYGN-EDFLSQLVAKACSTVL-PKNPQNFNVDNIRVVKIMGGS 203
Query: 486 VEDTELVDGLVFTQKSANVNGP-KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRV 544
+ ++E++ G+VF + G KRV+KAK+ + + T+ V++ + +
Sbjct: 204 LSNSEVIKGMVFNR---EAEGSVKRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLNY 260
Query: 545 LKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEF 604
K E I ++K I +G NV++ S+ D+A+H+L++ ++V+K + ++
Sbjct: 261 SKGEENQIEAMIKAIADSGVNVIVTGGSV-----GDMALHYLNRYGIMVLKIPSKFELRR 315
Query: 605 VCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKL 664
+CKT+ P+ L PE L D V G + R T+++RGS K
Sbjct: 316 LCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGSTKN 375
Query: 665 VLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIA 724
+LD+ R++ D + VV+ LVK +
Sbjct: 376 LLDDIERAIDDGVNVVKALVKD---------------------------------GRFLP 402
Query: 725 GGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNR 784
G GA EIEL+ +LTKYA+ G+D Y + FA+A E+IP TLAENAGLNP + +L
Sbjct: 403 GAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAA 462
Query: 785 HAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
H +G T+ GI++ + + E + L AI L+TE ++L++D I+
Sbjct: 463 HKKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQII 517
Score = 188 bits (480), Expect = 2e-51
Identities = 96/303 (31%), Positives = 156/303 (51%), Gaps = 25/303 (8%)
Query: 60 EVTITNDGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGC 119
+ T T+L IH A ++++ YS K E I ++K I +G
Sbjct: 239 DTATTETKGTVL-----IHNAEELLN-------YS------KGEENQIEAMIKAIADSGV 280
Query: 120 NVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH 179
NV++ S+ D+A+H+L++ ++V+K + ++ +CKT+ P+ L PE
Sbjct: 281 NVIVTGGSV-----GDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEE 335
Query: 180 LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLV 239
L D V G + R T+++RGS K +LD+ R++ D + VV+ LV
Sbjct: 336 LGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALV 395
Query: 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299
K + G GA EIEL+ +LTKYA+ G+D Y + FA+A E+IP TLAENAGLNP
Sbjct: 396 KDGRFLPGAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEV 455
Query: 300 VTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 357
+ +L H +G T+ GI++ + + E + L AI L+TE ++L++D
Sbjct: 456 IPKLYAAHKKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQ 515
Query: 358 ILV 360
I++
Sbjct: 516 IIM 518
Score = 64.4 bits (157), Expect = 1e-10
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
NI A K ++ RTSLGP GM+KM+ ++ +TND ATIL+++ V HPAAK++
Sbjct: 23 NIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLL 77
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 260 bits (667), Expect = 4e-78
Identities = 153/557 (27%), Positives = 263/557 (47%), Gaps = 101/557 (18%)
Query: 289 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 348
E A L I EL T+ G N + N LE+ L V++ A T+ E
Sbjct: 6 LEEAVLRNIEACKEL---SQITRTSYGPNGMNKMVINHLEK-----LFVTSDAATILRE- 56
Query: 349 VRSILKID----DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDA 404
L++ +LV S+ Q+ E GDGT VV++AG LLE AE+LL G+HP+ I +
Sbjct: 57 ----LEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEG 112
Query: 405 FQKAAAKCVEILTEMS--TPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV 462
++KA K +EIL E+ L ++E + K+ T++ SK + L+P+ +A + V
Sbjct: 113 YEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNE-DFLSPLVAEACISV 171
Query: 463 VNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCI 522
+ P+ N ++ +I+V++ LGG++ED+++V G+VF ++ KRV+KAK+ +
Sbjct: 172 L-PENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGS--VKRVKKAKVAVF---S 225
Query: 523 SPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLA 582
P D+ V+V+ ++ DLA
Sbjct: 226 CP--FDIGVNVIVAG--------------------------------------GSVGDLA 245
Query: 583 IHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFV 642
+H+ +K ++V+K + ++ +C+T+ P+ L PE + D V G+++ V
Sbjct: 246 LHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVV 305
Query: 643 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 702
+ + T+V+RG+ + +LD+ R++ D + V + L K
Sbjct: 306 VFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTK----------------- 348
Query: 703 KLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVI 762
D + G GA EIEL+ KL +Y + G++ Y + FA+A EV+
Sbjct: 349 ------------DG----RFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVV 392
Query: 763 PLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAI 820
P TLAENAGL+ ++EL H +G + G+++ G + E + L AI
Sbjct: 393 PRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAI 452
Query: 821 TLSTETVRSILKIDDIV 837
L+TE ++L++D I+
Sbjct: 453 KLATEAAVTVLRVDQII 469
Score = 188 bits (479), Expect = 8e-52
Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 18/265 (6%)
Query: 109 NIVKQIKKA-----------GCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 157
VK++KKA G NV++ S+ DLA+H+ +K ++V+K + ++
Sbjct: 211 GSVKRVKKAKVAVFSCPFDIGVNVIVAGGSV-----GDLALHYCNKYGIMVIKINSKFEL 265
Query: 158 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 217
+C+T+ P+ L PE + D V G+++ V + + T+V+RG+
Sbjct: 266 RRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGAT 325
Query: 218 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 277
+ +LD+ R++ D + V + L K + G GA EIEL+ KL +Y + G++ Y + F
Sbjct: 326 QNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKF 385
Query: 278 AQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPL 335
A+A EV+P TLAENAGL+ ++EL H +G + G+++ G + E + L
Sbjct: 386 AEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHL 445
Query: 336 LVSTSAITLSTETVRSILKIDDILV 360
AI L+TE ++L++D I++
Sbjct: 446 ATKKWAIKLATEAAVTVLRVDQIIM 470
Score = 69.6 bits (171), Expect = 3e-12
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
NI A K ++ RTS GP GM+KM+ ++ +T+D ATIL+++ V HPAAK+
Sbjct: 12 RNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKL 66
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 261 bits (668), Expect = 1e-77
Identities = 157/491 (31%), Positives = 248/491 (50%), Gaps = 63/491 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
ILV++SK QD E GDGTTSVV++AG LL AEKLL + IHP TI + ++ A + L
Sbjct: 85 ILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALE 144
Query: 418 EMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
E++ + +E+L+ A T+L+SK+++ + A +AVDAVL++ + N+D
Sbjct: 145 EIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRL---KGSGNLDY- 200
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDH--- 531
I++I+K GGT+ D+ L DG + +K V PKR+E KI L+ T MD
Sbjct: 201 -IQIIKKPGGTLRDSYLEDGFIL-EKKIGVGQPKRLENCKI-LVA------NTPMDTDKI 251
Query: 532 -----KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 586
KV V + + E+ + N V +I GCNV I R I +
Sbjct: 252 KIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVF-----INRQLIYNYPEQLF 306
Query: 587 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 646
+ ++ ++ + + +E + L +++ D L DL+EEI G + ++ SG
Sbjct: 307 AEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSG 366
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
G T+V+RG++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + +
Sbjct: 367 CAK-GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEE 425
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
A V G + +A IE AFA+AL IP +
Sbjct: 426 LAKKVEGKKS------LA------IE---------------------AFAKALRQIPTII 452
Query: 767 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 826
A+N G + V++LR H +G T GI++ KG + ++ E + + V S + +TE
Sbjct: 453 ADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEA 512
Query: 827 VRSILKIDDIV 837
IL++DDI+
Sbjct: 513 AEMILRVDDII 523
Score = 162 bits (413), Expect = 1e-42
Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 6/273 (2%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
KV V + + E+ + N V +I GCNV I R I + + +
Sbjct: 257 KVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVF-----INRQLIYNYPEQLFAEAGI 311
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 206
+ ++ + + +E + L +++ D L DL+EEI G + ++ SG G
Sbjct: 312 MAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-G 370
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
T+V+RG++ +LDEA RSLHDALCV+ VK ++ GGG E+ ++ + + A V
Sbjct: 371 EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKV 430
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
G + AFA+AL IP +A+N G + V++LR H +G T GI++ KG + ++
Sbjct: 431 EGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDM 490
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
E + + V S + +TE IL++DDI+
Sbjct: 491 KELGITESYKVKLSQLCSATEAAEMILRVDDII 523
Score = 70.4 bits (173), Expect = 2e-12
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 21 SKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASN-----GEVTITNDGATILKQMN 75
K R + A AVAD ++T+LGP+GMDK++Q + G VT+TNDGATILK +
Sbjct: 18 EKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVW 77
Query: 76 VIHPAAKMM 84
+ +PAAK++
Sbjct: 78 LDNPAAKIL 86
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 254 bits (650), Expect = 3e-75
Identities = 156/502 (31%), Positives = 257/502 (51%), Gaps = 60/502 (11%)
Query: 351 SILKIDDI-------LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISD 403
+ILK+ DI LV+++K+QD E GDGTTSVVI+AG LL+ A+ + +G+HP I
Sbjct: 62 TILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIR 121
Query: 404 AFQKAAAKCVEILTEMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVL 460
+++A + +E + E++ I RE L K AAT+L+SK+++ + + VDAVL
Sbjct: 122 GYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVL 181
Query: 461 KVVNPQRDTN-VDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNG----PKRVEKAKI 515
D + +DLK I V + GG +ED+ LV+G+ F +K+ + G PK+ KI
Sbjct: 182 -----SLDRDDLDLKLIGVKKVQGGALEDSVLVNGVAF-KKTFSYAGFEQQPKKFANPKI 235
Query: 516 GLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILR 575
L+ + + ++ V D ++ E A I +++I ++G N++L +
Sbjct: 236 LLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLP--- 292
Query: 576 DAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP 635
I DLA + + + ED++ V K ++ + L + L EE
Sbjct: 293 --IGDLATQYFADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQ 350
Query: 636 AGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGA 695
G+ R+ +G + +T T+++RG + ++EA RSLHDA+ +VR +K + ++AGGGA
Sbjct: 351 IGSERYNLFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGA 409
Query: 696 PEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 755
E+ELS L Y+ T+ G + LI AF
Sbjct: 410 IEMELSKCLRDYSKTIDGK-----QQLIIN----------------------------AF 436
Query: 756 AQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLV 815
A+ALEVIP L ENAG + I + +LR+ HA+G G+++ I + E V +P LV
Sbjct: 437 AKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDINTEDIGDNFENFVWEPALV 496
Query: 816 STSAITLSTETVRSILKIDDIV 837
+A+ +TE +IL +D+ +
Sbjct: 497 KINALKAATEAACTILSVDETI 518
Score = 163 bits (413), Expect = 9e-43
Identities = 83/263 (31%), Positives = 140/263 (53%), Gaps = 6/263 (2%)
Query: 98 RVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDI 157
++ E A I +++I ++G N++L + I DLA + + + ED+
Sbjct: 263 AIVDAEWAIIFEKLRKIVESGANIVLSKLPI-----GDLATQYFADHNIFCAGRVSAEDM 317
Query: 158 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 217
+ V K ++ + L + L EE G+ R+ +G + +T T+++RG
Sbjct: 318 KRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLFTGCPH-AKTCTIILRGGA 376
Query: 218 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 277
+ ++EA RSLHDA+ +VR +K + ++AGGGA E+ELS L Y+ T+ G AF
Sbjct: 377 EQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYSKTIDGKQQLIINAF 436
Query: 278 AQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLV 337
A+ALEVIP L ENAG + I + +LR+ HA+G G+++ I + E V +P LV
Sbjct: 437 AKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDINTEDIGDNFENFVWEPALV 496
Query: 338 STSAITLSTETVRSILKIDDILV 360
+A+ +TE +IL +D+ +
Sbjct: 497 KINALKAATEAACTILSVDETIT 519
Score = 84.8 bits (210), Expect = 4e-17
Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM---- 84
SNI A A+A+A++T+LGPRGMDK+I SNG+ T++NDGATILK ++++HPAAK +
Sbjct: 22 SNINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPAAKTLVDIA 81
Query: 85 -DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
V D + +L E +L K + G + L+ + R+A+S LAI + +
Sbjct: 82 KSQDSEVGDGTTSVVILAGE---LLKEAKPFIEEGVHPQLIIRG-YREALS-LAIEKIKE 136
Query: 144 IKVLV--VKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200
I V + K +RE +E T L+++ IA F + + A L + + + + +
Sbjct: 137 IAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAVLSLDRDDLDLKLIGVK 196
Query: 201 GIQNPGRTLTVVVRG 215
+Q +V+V G
Sbjct: 197 KVQGGALEDSVLVNG 211
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 251 bits (642), Expect = 5e-74
Identities = 163/562 (29%), Positives = 281/562 (50%), Gaps = 73/562 (12%)
Query: 310 GETTTGINVRKG------AITNILEENV----VQPLLVSTSA---ITLSTETVRSILKID 356
GE T+G +VR AI NI++ ++ + +LV IT T+ +L+++
Sbjct: 1 GERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 60
Query: 357 D----ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKC 412
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ + IHPTTI ++ A +
Sbjct: 61 HPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEA 120
Query: 413 VEILTE-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVL--KVVNPQRDT 469
V+ + E +S + +E+LI A TS++SK++ + A + VDA+L K N + T
Sbjct: 121 VKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKT 180
Query: 470 NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM 529
+K + +++ G + +++ LV+G A+ P RV+ AKI + F + K +
Sbjct: 181 KYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240
Query: 530 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589
+VVV+D ++++ + E +K+I AG NV+L I D+ + + +
Sbjct: 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTG-----GIDDMCLKYFVEA 295
Query: 590 KVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVK 643
+ V+ +++ED+ + K +++L + F P +L A+ V + G+ +
Sbjct: 296 GAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELIL 355
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703
I G + + ++++RG+N +LDE RSLHDALCVV+ R L +
Sbjct: 356 IKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVK-----RTLESN----------- 398
Query: 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 763
+++ GGGA E LS+ L +A T+ + FA+AL VIP
Sbjct: 399 -----------------SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIP 441
Query: 764 LTLAENAGLNPISTVTELRNRHAQGETT--------TGINVRKGAITNILEENVVQPLLV 815
TLA NA + V +LR HA + G+++ G + + LE V++P +
Sbjct: 442 KTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVS 501
Query: 816 STSAITLSTETVRSILKIDDIV 837
++ +TE +IL+IDD++
Sbjct: 502 KIKSLKFATEAAITILRIDDLI 523
Score = 142 bits (359), Expect = 1e-35
Identities = 83/285 (29%), Positives = 148/285 (51%), Gaps = 20/285 (7%)
Query: 87 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 146
+VVV+D ++++ + E +K+I AG NV+L I D+ + + +
Sbjct: 243 QVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTG-----GIDDMCLKYFVEAGA 297
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVKIS 200
+ V+ +++ED+ + K +++L + F P +L A+ V + G+ + I
Sbjct: 298 MAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIK 357
Query: 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 260
G + + ++++RG+N +LDE RSLHDALCVV+ ++ +++ GGGA E LS+ L
Sbjct: 358 GTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLE 416
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT------- 313
+A T+ + FA+AL VIP TLA NA + V +LR HA +
Sbjct: 417 NFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLK 476
Query: 314 -TGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 357
G+++ G + + LE V++P + ++ +TE +IL+IDD
Sbjct: 477 WYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDD 521
Score = 89.3 bits (222), Expect = 2e-18
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D+R N+ AA A+A+ +++SLGP G+DKM+ G+VTITNDGATILK + V HPAAK++
Sbjct: 8 DVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKIL 67
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 247 bits (633), Expect = 1e-72
Identities = 158/562 (28%), Positives = 275/562 (48%), Gaps = 73/562 (12%)
Query: 310 GETTTGINVRKG------AITNILEENV----VQPLLVSTSA---ITLSTETVRSILKID 356
GE T+G +VR A+ NI++ ++ + +LV IT T+ +L+++
Sbjct: 5 GERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 64
Query: 357 D----ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKC 412
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ +HPT+I ++ A +
Sbjct: 65 HPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEA 124
Query: 413 VEILTE-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVL--KVVNPQRDT 469
V+ + E +S + +E LI A TS++SK++ + + I VDAVL K N +
Sbjct: 125 VKYIKENLSVSVDTLGKEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEI 184
Query: 470 NVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM 529
+K + +++ G + ++ LV G A+ PKR++KAKI + F + K +
Sbjct: 185 KYPIKAVNILKAHGKSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKAKMAL 244
Query: 530 DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKI 589
++VV D + ++++ + E +K+I AG NV+L I D+ + + +
Sbjct: 245 GVQIVVDDPAKLEQIRQREADITKERIKKILDAGANVVLTTG-----GIDDMCLKYFVEA 299
Query: 590 KVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGNSRFVK 643
+ V+ ++ED++ + K +++L + F +L AD V + + +
Sbjct: 300 GAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDECIL 359
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 703
I G + + ++++RG+N +LDE RSLHDALCVV+ R L +
Sbjct: 360 IKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVK-----RTLESN----------- 402
Query: 704 LTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIP 763
+++ GGGA E LS+ L +A T+ + FA+AL +IP
Sbjct: 403 -----------------SVVPGGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIP 445
Query: 764 LTLAENAGLNPISTVTELRNRHAQGETTT--------GINVRKGAITNILEENVVQPLLV 815
TLA NA + V +LR HA + G+++ G I + E V++P +
Sbjct: 446 KTLAVNAAKDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVS 505
Query: 816 STSAITLSTETVRSILKIDDIV 837
++ +TE +IL+IDD++
Sbjct: 506 KVKSLKFATEAAITILRIDDLI 527
Score = 136 bits (345), Expect = 9e-34
Identities = 83/294 (28%), Positives = 151/294 (51%), Gaps = 21/294 (7%)
Query: 81 AKM-MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIH 139
AKM + ++VV D + ++++ + E +K+I AG NV+L I D+ +
Sbjct: 240 AKMALGVQIVVDDPAKLEQIRQREADITKERIKKILDAGANVVLTTG-----GIDDMCLK 294
Query: 140 FLDKIKVLVVKDIEREDIEFVCKTLNTRPIASL------DHFLPEHLSSADLVEEIPAGN 193
+ + + V+ ++ED++ + K +++L + F +L AD V + +
Sbjct: 295 YFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIAD 354
Query: 194 SRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEI 253
+ I G + + ++++RG+N +LDE RSLHDALCVV+ ++ +++ GGGA E
Sbjct: 355 DECILIKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVEA 413
Query: 254 ELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT 313
LS+ L +A T+ + FA+AL +IP TLA NA + V +LR HA +
Sbjct: 414 ALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAKLRAYHAAAQLK 473
Query: 314 T--------GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G I + E V++P + ++ +TE +IL+IDD++
Sbjct: 474 PEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLI 527
Score = 89.8 bits (223), Expect = 1e-18
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIH 78
+++ D+R N+ A AVA+ ++TSLGP G+DKM+ G+VTITNDGATILK + V H
Sbjct: 6 ERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 65
Query: 79 PAAKMM 84
PAAK++
Sbjct: 66 PAAKIL 71
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 237 bits (606), Expect = 2e-69
Identities = 148/485 (30%), Positives = 240/485 (49%), Gaps = 87/485 (17%)
Query: 359 LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE 418
++ELS+ QD E GDGTTSV+I+AG +L AE L +GIHPT I A++KA ++IL E
Sbjct: 75 MIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEE 134
Query: 419 MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVV--NPQRDTNVDLKD- 475
+S P+ + DR ++K + + +K VS+ + L+ +A+DAV V R +D+K
Sbjct: 135 ISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRY 194
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
KV + GG +ED+ ++DG++ + +V PK
Sbjct: 195 AKVEKIPGGEIEDSRVLDGVMLNK---DVTHPK--------------------------- 224
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNV-LLVQKSILRDAISDLAIHFLDKIKVLVV 594
M R ++ R +L+ C + LV I +SDLA H+L K + +
Sbjct: 225 -----MRRRIENPRIVLLD---------CPLEYLV---ITEKGVSDLAQHYLVKAGITAL 267
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRT 653
+ + + D + + + + + + A L E G+ F I+ ++P +
Sbjct: 268 RRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-KA 326
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+++RG++K VL+E R+L DA+ V R ++ P+
Sbjct: 327 CTILLRGASKDVLNEVERNLQDAMAVARNIILN---------PK---------------- 361
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
L+ GGGA E+ +S L++ A ++ G++ + ++A A ALEVIP TLA+N G N
Sbjct: 362 --------LVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGAN 413
Query: 774 PISTVTELRNRHAQGE-TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
I T+TELR +HAQGE +T GI+ G I ++ E + PL V + E +L+
Sbjct: 414 VIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLR 473
Query: 833 IDDIV 837
IDDIV
Sbjct: 474 IDDIV 478
Score = 150 bits (381), Expect = 8e-39
Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 3/229 (1%)
Query: 133 ISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPA 191
+SDLA H+L K + ++ + + D + + + + + + A L E
Sbjct: 251 VSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKI 310
Query: 192 GNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAP 251
G+ F I+ ++P + T+++RG++K VL+E R+L DA+ V R ++ L+ GGGA
Sbjct: 311 GDEYFTFITECKDP-KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGAT 369
Query: 252 EIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGE 311
E+ +S L++ A ++ G++ + ++A A ALEVIP TLA+N G N I T+TELR +HAQGE
Sbjct: 370 EMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGE 429
Query: 312 -TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+T GI+ G I ++ E + PL V + E +L+IDDI+
Sbjct: 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478
Score = 79.6 bits (197), Expect = 2e-15
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 26 IRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
+ NI AAK VAD IRT LGPR M KM+ G + +TNDG IL++++V HPAAK M
Sbjct: 17 AQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSM 75
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 231 bits (590), Expect = 9e-67
Identities = 150/496 (30%), Positives = 251/496 (50%), Gaps = 68/496 (13%)
Query: 359 LVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTE 418
++ELS+ QD E GDGTTSV+I+AG +L AE L + IHPT I A++KA + +L E
Sbjct: 75 MIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEE 134
Query: 419 MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVV--NPQRDTNVDLKD- 475
+S P+ + D ++K + + +K VS+ + L+ +A+DAV V +D+K
Sbjct: 135 ISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRY 194
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPK---RVEKAKIGLIQFCISPPKTDMDHK 532
KV + GG +ED+ ++ G++ + +V PK +E +I L+ + K +
Sbjct: 195 AKVEKIPGGDIEDSCVLKGVMINK---DVTHPKMRRYIENPRIVLLDCPLEYKKGESQTN 251
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
V + +R+L+ E Y+ + + I ++++ +K +SDLA H+L K +
Sbjct: 252 VEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEK-----GVSDLAQHYLLKANIS 306
Query: 593 VVKDIERED---IEFVC-KTLNTRPIASLDHFLPEHLSSAD------LVEEIPAGNSRFV 642
++ + + D I C T+ R PE L +D L E G+ F
Sbjct: 307 AIRRVRKTDNNRIARACGATIVNR---------PEELRESDVGTGCGLFEVKKIGDEYFT 357
Query: 643 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 702
+ ++P + T+++RG++K VL+E R+L DA+ V R ++ + L+ GGGA E+ +S+
Sbjct: 358 FFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSV 416
Query: 703 KLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVI 762
L K A + G+ + +RA+ A ALE+I
Sbjct: 417 YLAKKASKLEGVQQWPYRAV---------------------------------ADALEII 443
Query: 763 PLTLAENAGLNPISTVTELRNRHAQGET-TTGINVRKGAITNILEENVVQPLLVSTSAIT 821
P TLA+N G+N I T+TELR +HAQ T GI+ G I ++ E+ + +PL V
Sbjct: 444 PRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYK 503
Query: 822 LSTETVRSILKIDDIV 837
+ E+ +L+IDDIV
Sbjct: 504 TAIESACMLLRIDDIV 519
Score = 151 bits (383), Expect = 9e-39
Identities = 91/288 (31%), Positives = 153/288 (53%), Gaps = 26/288 (9%)
Query: 88 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 147
V + +R+L+ E Y+ + + I ++++ +K +SDLA H+L K +
Sbjct: 252 VEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEK-----GVSDLAQHYLLKANIS 306
Query: 148 VVKDIERED---IEFVC-KTLNTRPIASLDHFLPEHLSSAD------LVEEIPAGNSRFV 197
++ + + D I C T+ RP E L +D L E G+ F
Sbjct: 307 AIRRVRKTDNNRIARACGATIVNRP---------EELRESDVGTGCGLFEVKKIGDEYFT 357
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 257
+ ++P + T+++RG++K VL+E R+L DA+ V R ++ + L+ GGGA E+ +S+
Sbjct: 358 FFTECKDP-KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSV 416
Query: 258 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET-TTGI 316
L K A + G+ + +RA A ALE+IP TLA+N G+N I T+TELR +HAQ T GI
Sbjct: 417 YLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476
Query: 317 NVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364
+ G I ++ E+ + +PL V + E+ +L+IDDI+ + K
Sbjct: 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKK 524
Score = 74.0 bits (182), Expect = 1e-13
Identities = 34/56 (60%), Positives = 42/56 (75%)
Query: 29 SNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
SNI AAKAVAD IRT+LGPR M KM+ G + +TNDG IL++++V HPAAK M
Sbjct: 20 SNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSM 75
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 220 bits (561), Expect = 9e-63
Identities = 151/484 (31%), Positives = 249/484 (51%), Gaps = 49/484 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV +SK QD E GDGTTSV ++A LL AEKL+++ IHP TI + ++ A ++ LT
Sbjct: 73 VLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYRLATKAALDALT 132
Query: 418 EMSTPIT---LADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + + RE+LI A T+L+SK++SQ A +AVDAVL++ + TN++
Sbjct: 133 KSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLRL---KGSTNLE-- 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHKV 533
I++I+ LGG + D+ L +G + K VN PKR+E AKI + + K + +V
Sbjct: 188 AIQIIKILGGKLSDSFLDEGFIL-AKKIGVNQPKRIENAKILIANTTMDTDKVKIFGSRV 246
Query: 534 VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593
V + + + K ER + V++I K G N I R I + ++
Sbjct: 247 RVDSTAKLAELEKAEREKMKEKVEKILKHGINCF-----INRQLIYNYPEQLFADAGIMS 301
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ + E +E + +++ DH L S DL+EEI G + +K SG++ G
Sbjct: 302 IEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVK-AGEA 360
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+V+RG+ + +LDEA RSLHDALCV+ VK+ + GGG E+ +S + A + G
Sbjct: 361 CTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVDTEAQNIPG 420
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
K A V AFA+AL +P LA+NAG +
Sbjct: 421 -------------------------KKALAVE--------AFARALRQLPTILADNAGFD 447
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
V +LR H G +T G+++ +G I ++ + +V+ + + ++ ++E +L++
Sbjct: 448 SSELVAQLRAAHYNGNSTMGLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRV 507
Query: 834 DDIV 837
D+I+
Sbjct: 508 DNII 511
Score = 138 bits (350), Expect = 1e-34
Identities = 82/278 (29%), Positives = 144/278 (51%), Gaps = 6/278 (2%)
Query: 82 KMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFL 141
K+ +V V + + + K ER + V++I K G N I R I +
Sbjct: 240 KIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCF-----INRQLIYNYPEQLF 294
Query: 142 DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 201
++ ++ + E +E + +++ DH L S DL+EEI G + +K SG
Sbjct: 295 ADAGIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSG 354
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
++ G T+V+RG+ + +LDEA RSLHDALCV+ VK+ + GGG E+ +S +
Sbjct: 355 VK-AGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVDT 413
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321
A + G A AFA+AL +P LA+NAG + V +LR H G +T G+++ +G
Sbjct: 414 EAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYNGNSTMGLDMNEG 473
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
I ++ + +V+ + + ++ ++E +L++D+I+
Sbjct: 474 TIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 511
Score = 61.4 bits (149), Expect = 1e-09
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASN-GEVTITNDGATILKQMNVI 77
+ +A + R S+ A AV D ++++LGP+GMDK++Q+++ + +TNDGATILK + +
Sbjct: 8 TEERAENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGLD 67
Query: 78 HPAAKMMDHKVVVSDYSAMD 97
+PAAK++ + V D D
Sbjct: 68 NPAAKVLVNISKVQDDEVGD 87
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 190 bits (486), Expect = 7e-56
Identities = 87/258 (33%), Positives = 129/258 (50%), Gaps = 50/258 (19%)
Query: 428 RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVE 487
RE L++ A TSLNSK+ S L + VDAVLKV R DL IKV + GG++E
Sbjct: 1 RELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRM--DDLGVIKVEKIPGGSLE 57
Query: 488 DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKE 547
D+ELV G+VF + A+ PKR+E AKI L+ +
Sbjct: 58 DSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY----------------------- 94
Query: 548 ERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCK 607
V++ +K I DLA+H+L K ++ V+ +++ED+E + +
Sbjct: 95 ------------------VVIAEKGI-----DDLALHYLAKAGIMAVRRVKKEDLERIAR 131
Query: 608 TLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLD 667
++SL+ PE L +A+LVEE G + I G + T+++RG+ ++ LD
Sbjct: 132 ATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGK-AATILLRGATEVELD 190
Query: 668 EAARSLHDALCVVRCLVK 685
E RSLHDALC VR V+
Sbjct: 191 EVKRSLHDALCAVRAAVE 208
Score = 122 bits (308), Expect = 1e-31
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 95 AMDRVLKEERAYILNIVKQIKKAG-----------------------------CNVLLVQ 125
A+ +V + R L ++K K G +LL+
Sbjct: 30 AVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLD 89
Query: 126 KS-----ILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL 180
I I DLA+H+L K ++ V+ +++ED+E + + ++SL+ PE L
Sbjct: 90 CPLEYVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDL 149
Query: 181 SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVK 240
+A+LVEE G + I G + T+++RG+ ++ LDE RSLHDALC VR V+
Sbjct: 150 GTAELVEETKIGEEKLTFIEGCKGGK-AATILLRGATEVELDEVKRSLHDALCAVRAAVE 208
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 185 bits (473), Expect = 5e-51
Identities = 131/475 (27%), Positives = 223/475 (46%), Gaps = 73/475 (15%)
Query: 365 AQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPI- 423
AQD GDGTTS V++ G LL+ AE+ + +G+HP I++ F+ A K ++ L P+
Sbjct: 77 AQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVE 136
Query: 424 TLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483
DRE L+ A TSL +K+ + A L I VDAVL + P D +DL +++++
Sbjct: 137 IDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP--DEPIDLHMVEIMQMQH 194
Query: 484 GTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDR 543
+ DT+L+ GLV + + + PKRVE A I + KT+++ YS
Sbjct: 195 KSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFF---YS---- 247
Query: 544 VLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAIS-DLAIHFLDKIKVLVVKDIEREDI 602
V++ QK I D S D+ L K +L ++ +R ++
Sbjct: 248 ----------------------VVINQKGI--DPPSLDM----LAKEGILALRRAKRRNM 279
Query: 603 EFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 662
E + + S+D PE L A LV E G ++ I G++NP ++ T++++G N
Sbjct: 280 ERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-KSCTILIKGPN 338
Query: 663 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAL 722
+ + ++ D L V+ ++ + ++ G GA E+ L L ++ +V G +A
Sbjct: 339 DHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKG------KAK 392
Query: 723 IAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELR 782
+ G+ AFA AL VIP TLAEN+GL+ T+ +L+
Sbjct: 393 L----------------------GVQ-----AFADALLVIPKTLAENSGLDVQETLVKLQ 425
Query: 783 NRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
+ +A+G G+++ G + E + V + +T +L +D+I+
Sbjct: 426 DEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEII 480
Score = 111 bits (279), Expect = 1e-25
Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 8/241 (3%)
Query: 120 NVLLVQKSILRDAIS-DLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPE 178
+V++ QK I D S D+ L K +L ++ +R ++E + + S+D PE
Sbjct: 247 SVVINQKGI--DPPSLDM----LAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPE 300
Query: 179 HLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCL 238
L A LV E G ++ I G++NP ++ T++++G N + + ++ D L V+
Sbjct: 301 CLGYAGLVYERTLGEEKYTFIEGVKNP-KSCTILIKGPNDHTITQIKDAIRDGLRAVKNA 359
Query: 239 VKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 298
++ + ++ G GA E+ L L ++ +V G +AFA AL VIP TLAEN+GL+
Sbjct: 360 IEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQE 419
Query: 299 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
T+ +L++ +A+G G+++ G + E + V + +T +L +D+I
Sbjct: 420 TLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEI 479
Query: 359 L 359
+
Sbjct: 480 I 480
Score = 65.7 bits (161), Expect = 4e-11
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVV 89
NI AAK + D ++T+LGP+G KM+ + G++ +T DG +L +M + HP A M+
Sbjct: 17 NISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAA- 75
Query: 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLL--VQKSILRDAIS---DLAIHFLDKI 144
+A D + + + ++ ++ K + V I+ + + A+ FL+
Sbjct: 76 ----TAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESF 131
Query: 145 KVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSA--DLVEEIPAGNSRF----V 197
KV V D +RE + V +T L T L L + L+ D V I + V
Sbjct: 132 KVPVEIDTDRELLLSVARTSLRT----KLHADLADQLTEIVVDAVLAIYKPDEPIDLHMV 187
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAAR 226
+I +Q+ + T ++RG LVLD AR
Sbjct: 188 EIMQMQHKSDSDTKLIRG---LVLDHGAR 213
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 171 bits (436), Expect = 1e-45
Identities = 132/484 (27%), Positives = 228/484 (47%), Gaps = 52/484 (10%)
Query: 365 AQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPIT 424
AQD GDGTTS VI+ G LL+ AE+ + +G+HP I++ F+ A + +E L +
Sbjct: 81 AQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTE 140
Query: 425 LA-DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLG 483
DRE L+ A TSL +K+ A L I VDAVL + D ++ + +I ++
Sbjct: 141 DEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDIDLFMVEIMEMKHKS 200
Query: 484 GTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDR 543
T DT L+ GLV + + + P+RV+ A I + KT+++ S ++
Sbjct: 201 AT--DTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSSAEQREK 258
Query: 544 VLKEERAYILNIVKQI---KKAGCN-------VLLVQKSILRDAISDLAIHFLDKIKVLV 593
++ ER ++ + VK+I KK C V++ QK I D S + L K +L
Sbjct: 259 LVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI--DPPS---LDLLAKEGILA 313
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ +R ++E + + S++ PE L A LV E G ++ I ++NP ++
Sbjct: 314 LRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYTFIEEVKNP-KS 372
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T++++G N + + ++ D L V+ ++ + ++ G GA EI L + +V G
Sbjct: 373 CTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSVKG 432
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
+A KL G++ AFA AL VIP TLAEN+G +
Sbjct: 433 ------KA--------------KL--------GVE-----AFANALLVIPKTLAENSGFD 459
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
T+ +L + H +G G+++ G + + + V I +T +L +
Sbjct: 460 AQDTLVKLEDEHDEGGEVVGVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519
Query: 834 DDIV 837
D+++
Sbjct: 520 DEVM 523
Score = 100 bits (251), Expect = 5e-22
Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 16/273 (5%)
Query: 97 DRVLKEERAYILNIVKQI---KKAGCN-------VLLVQKSILRDAISDLAIHFLDKIKV 146
++++ ER ++ + VK+I KK C V++ QK I D S + L K +
Sbjct: 257 EKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI--DPPS---LDLLAKEGI 311
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 206
L ++ +R ++E + + S++ PE L A LV E G ++ I ++NP
Sbjct: 312 LALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYTFIEEVKNP- 370
Query: 207 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 266
++ T++++G N + + ++ D L V+ ++ + ++ G GA EI L + +V
Sbjct: 371 KSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKENKKSV 430
Query: 267 SGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNI 326
G AFA AL VIP TLAEN+G + T+ +L + H +G G+++ G +
Sbjct: 431 KGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVDLNTGEPIDP 490
Query: 327 LEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ + V I +T +L +D+++
Sbjct: 491 EIKGIWDNYRVKKQLIQSATVIASQLLLVDEVM 523
Score = 68.6 bits (168), Expect = 7e-12
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 30 NIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMMDHKVV 89
NI AA+ + D ++T+LGP+G KM+ + G++ +T DG +L +M + HP A M+
Sbjct: 21 NINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAA- 79
Query: 90 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLL--VQKSILRDAIS---DLAIHFLDKI 144
+A D + + + ++ ++ K +L V I+ + + FLDK
Sbjct: 80 ----TAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDKF 135
Query: 145 KVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLPEHLSSADLVEEIP--AGNSRFVKISG 201
KV +++RE + V +T L T+ L L E + A L + + V+I
Sbjct: 136 KVKTEDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEDIDLFMVEIME 195
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAAR 226
+++ T T ++RG LVLD AR
Sbjct: 196 MKHKSATDTTLIRG---LVLDHGAR 217
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 72.3 bits (178), Expect = 7e-14
Identities = 47/218 (21%), Positives = 100/218 (45%), Gaps = 33/218 (15%)
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+K+ + GG+ D+E+VDG+VFT+ A+ P +++ +I L+Q + +++ V
Sbjct: 50 VKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPL-------EYQRVE 102
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ ++D V+ +E+ Y+ N+V +I +V+LV+KS +S +A L + + +V
Sbjct: 103 NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKS-----VSRIAQDLLLEAGITLVL 157
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFL-PEHLSSADLVEEIPAGNSRFVKISGIQNPGRTL 654
+++ +E + + I+S+D L L + + R +TL
Sbjct: 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESF--------RVRTYVEEHGRSKTL 209
Query: 655 ------------TVVVRGSNKLVLDEAARSLHDALCVV 680
T+++RG + L + R + +
Sbjct: 210 MFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAA 247
Score = 42.2 bits (100), Expect = 6e-04
Identities = 33/184 (17%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 71 LKQMNVIHPAAKMM------DHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLV 124
K+M +++ +++ V + ++D V+ +E+ Y+ N+V +I +V+LV
Sbjct: 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV 136
Query: 125 QKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFL-PEHLSSA 183
+KS +S +A L + + +V +++ +E + + I+S+D L L +
Sbjct: 137 EKS-----VSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTC 191
Query: 184 DLVEEIPAGNSRFVKISGIQNPGRTL------------TVVVRGSNKLVLDEAARSLHDA 231
+ R +TL T+++RG + L + R +
Sbjct: 192 ESF--------RVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFM 243
Query: 232 LCVV 235
+
Sbjct: 244 VFAA 247
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 55.7 bits (135), Expect = 6e-08
Identities = 106/497 (21%), Positives = 193/497 (38%), Gaps = 97/497 (19%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D AGDGTT+ I+A ++ K + G++P + A +E L E S P
Sbjct: 90 SKTNDK-AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRP 148
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +E+++ A S N V + + DA+ KV +D + ++D
Sbjct: 149 VK--TKEDILNVATISANGDVE------IGSLIADAMDKV---GKDGTITVED------- 190
Query: 483 GGTVEDT-ELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDY--S 539
G T+ED E+V+G+ F + + P V K ++ + ++V+D S
Sbjct: 191 GKTLEDELEVVEGMSFDRGYIS---PYFVTNEKTQKVEL--------ENPLILVTDKKIS 239
Query: 540 AMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAI-HFLDKIKVLVVK--- 595
++ +L IL + K+ +L++ + + +A+ L I +KV VK
Sbjct: 240 SIQSILP-----ILEHAVKNKR---PLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPG 291
Query: 596 --DIEREDIEFVCKTLNTRPI------ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGI 647
D ++ ++ + + LD F P L SA K+
Sbjct: 292 FGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSA-------------KKV--T 336
Query: 648 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCV-----VRCLVKQR--------ALIAGGG 694
T+ + G + E L + + +K+R A+I GG
Sbjct: 337 VTKDETVILTGGGDKAEI-KERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGG 395
Query: 695 APEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTK-------YADTVSGI 747
A E+E++ K + D ++ A ++ GGG + S L K D +G+
Sbjct: 396 ASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGV 455
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
AL + +AENAG+ V ++ + + + G + + G N+ E
Sbjct: 456 K-----IVRNALRLPTKQIAENAGVEGAVVVEKILEK---KDPSFGYDAQTGEYVNMFEA 507
Query: 808 NVVQPLLVSTSAITLST 824
++ P V SA+ +
Sbjct: 508 GIIDPTKVVRSALVDAA 524
Score = 44.5 bits (106), Expect = 2e-04
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 4 NASGDSKNSKSSAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTI 63
N S + K+ + R S + + +ADA+ +LGP+G + +I+ G I
Sbjct: 1 NRSKMFSSRYRFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKI 60
Query: 64 TNDGATILK 72
T DG T+ K
Sbjct: 61 TKDGVTVAK 69
Score = 38.4 bits (90), Expect = 0.016
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTK-------YADTVSGIDAYCFRAFAQALE 282
DAL R V++ ++ GGG + S L K D +G+ AL
Sbjct: 410 DALNATRAAVEE-GIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVK-----IVRNALR 463
Query: 283 VIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 342
+ +AENAG+ V ++ + + + G + + G N+ E ++ P V SA+
Sbjct: 464 LPTKQIAENAGVEGAVVVEKILEK---KDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSAL 520
Query: 343 TLST 346
+
Sbjct: 521 VDAA 524
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 47.1 bits (113), Expect = 4e-05
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D AGDGTT+ ++A ++++ K + G +P + +KA VE L ++S P
Sbjct: 76 SKTND-VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKP 134
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKL 482
+ +E + + A S N + L+A +A+ KV +D + +++
Sbjct: 135 VK--TKEEIAQVATISANGDE--EIGELIA----EAMEKV---GKDGVITVEE------- 176
Query: 483 GGTVEDT-ELVDGLVF 497
G T+E E+V+G+ F
Sbjct: 177 GKTLETELEVVEGMQF 192
Score = 42.1 bits (100), Expect = 0.001
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 34 AKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + +I+ S G IT DG T+ K
Sbjct: 17 VNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAK 55
Score = 37.8 bits (89), Expect = 0.025
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 29/138 (21%)
Query: 228 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA----DTVSGIDAYCFRAFAQALEV 283
+ DAL R V++ ++ GGG + S L K D GI+ +ALE
Sbjct: 393 VEDALNATRAAVEE-GIVPGGGVALLRASPALDKLKALNGDEKLGIEI-----VRRALEA 446
Query: 284 IPLTLAENAGLNP---ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTS 340
+AENAG++ + V E + G + G +++E ++ P V S
Sbjct: 447 PLRQIAENAGVDGSVVVEKVLESPDGF-------GYDAATGEYVDMIEAGIIDPTKVVRS 499
Query: 341 AIT---------LSTETV 349
A+ L+TE +
Sbjct: 500 ALQNAASVASLLLTTEAL 517
Score = 35.9 bits (84), Expect = 0.085
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 44/164 (26%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVS--------GIDAYCFRALIAGGGAPEIELSLKLTK 739
A+I GGA E+EL K + D ++ GI + GGG + S L K
Sbjct: 374 AVIKVGGATEVELKEKKDRVEDALNATRAAVEEGI--------VPGGGVALLRASPALDK 425
Query: 740 YA----DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP---ISTVTELRNRHAQGETTT 792
D GI+ +ALE +AENAG++ + V E +
Sbjct: 426 LKALNGDEKLGIEI-----VRRALEAPLRQIAENAGVDGSVVVEKVLESPDGF------- 473
Query: 793 GINVRKGAITNILEENVVQPLLVSTSAIT---------LSTETV 827
G + G +++E ++ P V SA+ L+TE +
Sbjct: 474 GYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEAL 517
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 44.0 bits (105), Expect = 3e-04
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLT-L 288
DAL R V++ ++ GGG + + L + A A +ALE PL +
Sbjct: 397 DALNATRAAVEE-GIVPGGGVALLRAAKALDELAGLNGDQAAGV-EIVRRALEA-PLRQI 453
Query: 289 AENAGLNP---ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLS 345
AENAGL+ ++ V EL + G N G +++ ++ P+ V+ SA+ +
Sbjct: 454 AENAGLDGSVVVAKVLELEDGF-------GFNAATGEYGDLIAAGIIDPVKVTRSALQNA 506
Query: 346 TETVRSILKIDDILVELSKAQDIEAGDG 373
+L + ++ + + +D G G
Sbjct: 507 ASVAGLLLTTEALVADKPEEEDPPGGMG 534
Score = 43.6 bits (104), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + +I S G TIT DG +I K
Sbjct: 21 KLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAK 57
Score = 42.9 bits (102), Expect = 7e-04
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G A E+EL + + D ++ A ++ GGG + + L + A
Sbjct: 376 AVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQ 435
Query: 748 DAYCFRAFAQALEVIPLT-LAENAGLNP---ISTVTELRNRHAQGETTTGINVRKGAITN 803
A +ALE PL +AENAGL+ ++ V EL + G N G +
Sbjct: 436 AAGV-EIVRRALEA-PLRQIAENAGLDGSVVVAKVLELEDGF-------GFNAATGEYGD 486
Query: 804 ILEENVVQPLLVSTSA 819
++ ++ P+ V+ SA
Sbjct: 487 LIAAGIIDPVKVTRSA 502
Score = 38.2 bits (90), Expect = 0.016
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +L++ K + G +P + KA VE L ++ P
Sbjct: 78 SKTNDV-AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARP 136
Query: 423 ITLADRENLIKSAATSLNS 441
+ + E + + A S N
Sbjct: 137 V--SGSEEIAQVATISANG 153
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 44.0 bits (104), Expect = 3e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 34 AKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
+ADA++ +LGP+G + +I S G TITNDG TI K++ + M
Sbjct: 20 VNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENM 69
Score = 38.6 bits (90), Expect = 0.015
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G + E+E+ K + D + A ++ GGG + L K +T +G
Sbjct: 377 AVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDK-LETANGD 435
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
+ALE +AENAG V +LR G N ++ +
Sbjct: 436 QRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE----KPGGYGFNAATNEYGDLYAQ 491
Query: 808 NVVQPLLV---------STSAITLSTETV 827
V+ P+ V S + + L+TE +
Sbjct: 492 GVIDPVKVVRTALQNAASVAGLLLTTEAM 520
Score = 32.0 bits (73), Expect = 1.4
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +++ K + G +P + +A A VE L + P
Sbjct: 79 SKTNDV-AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARP 137
Query: 423 ITLADRENLIKSAATSLN 440
+T + + A S N
Sbjct: 138 VT--TNAEIAQVATISAN 153
Score = 30.9 bits (70), Expect = 2.9
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 15/146 (10%)
Query: 213 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 272
V S ++ + E + DAL R V++ ++ GGG + L K +T +G
Sbjct: 381 VGASTEVEVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRAVKALDK-LETANGDQRT 438
Query: 273 CFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVV 332
+ALE +AENAG V +LR G N ++ + V+
Sbjct: 439 GVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE----KPGGYGFNAATNEYGDLYAQGVI 494
Query: 333 QPLLV---------STSAITLSTETV 349
P+ V S + + L+TE +
Sbjct: 495 DPVKVVRTALQNAASVAGLLLTTEAM 520
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of
GroEL, the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 41.5 bits (98), Expect = 0.002
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 35 KAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
+ADA++ +LGP+G + +++ S G TIT DG T+ K++ + M
Sbjct: 19 DKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENM 67
Score = 41.5 bits (98), Expect = 0.002
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A ++++ K + G +P + +KA VE L ++S P
Sbjct: 77 SKTNDV-AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAVVEELKKLSKP 135
Query: 423 ITLADRENLIKSAATSLNS 441
+ ++ + + A S N+
Sbjct: 136 VK--GKKEIAQVATISANN 152
Score = 38.4 bits (90), Expect = 0.016
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 5/133 (3%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G A E E+ K + D ++ A ++ GGG + + L
Sbjct: 375 AVIKVGAATETEMKEKKLRIEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDGED 433
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
+A +ALE +AENAGL+ +++ + G N G +++E
Sbjct: 434 EAIGIDIVKRALEAPLRQIAENAGLDGAVVAEKVKE----LKGNFGFNAATGEYEDLVEA 489
Query: 808 NVVQPLLVSTSAI 820
++ P V+ SA+
Sbjct: 490 GIIDPTKVTRSAL 502
Score = 33.0 bits (76), Expect = 0.74
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLA 289
DAL R V++ ++ GGG + + L +A +ALE +A
Sbjct: 396 DALNATRAAVEE-GIVPGGGVALLRAAAALEG-LKGDGEDEAIGIDIVKRALEAPLRQIA 453
Query: 290 ENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 342
ENAGL+ +++ + G N G +++E ++ P V+ SA+
Sbjct: 454 ENAGLDGAVVAEKVKE----LKGNFGFNAATGEYEDLVEAGIIDPTKVTRSAL 502
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 41.2 bits (97), Expect = 0.002
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 24 TDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKM 83
TD R+ + +A+A++ +LGP+G + +++ S G IT DG T+ K++ + M
Sbjct: 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENM 69
Score = 33.2 bits (76), Expect = 0.59
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +++ KL+ G++P + A A V+ L +++
Sbjct: 79 SKTNDL-AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKK 137
Query: 423 IT 424
+T
Sbjct: 138 VT 139
Score = 32.0 bits (73), Expect = 1.3
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKY----ADT 743
A+I GGA E+E+ K + D + A ++ GGG + L AD
Sbjct: 377 AVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADE 436
Query: 744 VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 803
+GID +ALE +A NAG V ++ G N + G +
Sbjct: 437 TAGID-----IVRRALEEPLRQIATNAGFEGSVVVGKVAE----LPGNFGFNAQTGEYGD 487
Query: 804 ILEENVVQPLLVSTSAI 820
++E ++ P V+ +A+
Sbjct: 488 MVEAGIIDPAKVTRTAL 504
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 40.6 bits (95), Expect = 0.003
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQM 74
A KD + D R+ + +A+A++ +LGP+G + +I+ S G IT DG T+ K++
Sbjct: 2 AAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI 60
Score = 32.9 bits (75), Expect = 0.76
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I GGA E+E+ K + D ++ A ++ GGG + + + + + +
Sbjct: 377 AVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADV 436
Query: 748 DAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEE 807
A +ALE +AENAG+ V ++ ++ T G + + +++ +
Sbjct: 437 QA-GINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSE---TFGFDAQTEEYVDMVAK 492
Query: 808 NVVQPLLVSTSAI 820
++ P V +A+
Sbjct: 493 GIIDPAKVVRTAL 505
Score = 32.9 bits (75), Expect = 0.85
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +++ K + G++P + A A V+ + + + P
Sbjct: 79 SKTNDL-AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKP 137
Query: 423 I 423
+
Sbjct: 138 V 138
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 39.0 bits (92), Expect = 0.010
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +++ K + G +P + KA VE L ++S P
Sbjct: 78 SKTNDV-AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKP 136
Query: 423 ITLADRENLIKSAATSLNS 441
+ D+E + + A S N
Sbjct: 137 VE--DKEEIAQVATISANG 153
Score = 37.8 bits (89), Expect = 0.023
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + +++ S G TIT DG T+ K
Sbjct: 21 KLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAK 57
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 37.2 bits (86), Expect = 0.043
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMS 420
+K D+ AGDGTT+ V++A L+ K++ G +P I+ +K A V+ L +MS
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMS 190
Score = 31.4 bits (71), Expect = 2.0
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 24 TDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP 79
+ I+ G K +AD + +LGP+G + ++++ G I NDG T+ K++ + P
Sbjct: 66 SAIKKLQAGVNK-LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDP 120
Score = 30.3 bits (68), Expect = 4.7
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 10/181 (5%)
Query: 193 NSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPE 252
N R K+SG + V + L E + DAL + V++ ++ GGG
Sbjct: 420 NERIAKLSG-----GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEE-GIVVGGGCTL 473
Query: 253 IELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL-AENAGLNPISTVTELRNRHAQGE 311
+ L+ K+ DT+ + + PL L A+NAG+N S V+E +
Sbjct: 474 LRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNG-SVVSE--KVLSNDN 530
Query: 312 TTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAG 371
G N G +++ ++ P V + + ++ L D ++VE+ + + + AG
Sbjct: 531 PKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAG 590
Query: 372 D 372
+
Sbjct: 591 N 591
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 35.5 bits (82), Expect = 0.11
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYA-DTVSG 746
A+I G A E E+ K + D ++ A ++ GGGA + LS L +A + +
Sbjct: 376 AVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKE 435
Query: 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILE 806
+ A+A+ +AENAG N + +++ + + G N N+ E
Sbjct: 436 DELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYE 491
Query: 807 ENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
++ P V+ SA+ + IL + I+
Sbjct: 492 AGIIDPAKVTRSALQNAASIASMILTTECII 522
Score = 34.7 bits (80), Expect = 0.24
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A ++++ K + G +P ++ +KA V + E + P
Sbjct: 78 SKTNDV-AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARP 136
Query: 423 I 423
+
Sbjct: 137 V 137
Score = 32.4 bits (74), Expect = 1.2
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 228 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA-DTVSGIDAYCFRAFAQALEVIPL 286
L DA+ + V++ ++ GGGA + LS L +A + + + A+A+
Sbjct: 395 LEDAINATKAAVEE-GIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLK 453
Query: 287 TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLST 346
+AENAG N + +++ + + G N N+ E ++ P V+ SA+ +
Sbjct: 454 RIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAA 509
Query: 347 ETVRSILKIDDILVELSKAQ 366
IL + I+V+ ++
Sbjct: 510 SIASMILTTECIIVDKKESS 529
Score = 31.6 bits (72), Expect = 2.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 38 ADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMN 75
A+A+ +LGP+G + +++ G I NDG TI K++
Sbjct: 23 AEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIE 60
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 34.6 bits (79), Expect = 0.26
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
K+ D R+ + +A+A++ +LGP+G + ++ S G IT DG T+ K++ +
Sbjct: 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIEL 62
Score = 29.6 bits (66), Expect = 7.5
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK+ D AGDGTT+ ++A +++ K + G++P + A V L + S
Sbjct: 79 SKSADA-AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKK 137
Query: 423 ITLAD 427
+T D
Sbjct: 138 VTSND 142
>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase,
SPINDLY family [Posttranslational modification, protein
turnover, chaperones].
Length = 620
Score = 30.9 bits (70), Expect = 3.3
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 511 EKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQ 570
++ K + + + PP TD + + +A+++ R I I+ G ++L+
Sbjct: 286 DRDKFEVFAYSLGPPHTDALQERI---SAAVEKWYPIGRMDDAEIANAIRTDGIDILVDL 342
Query: 571 KSILRDAISDLAIHFLDKIKV 591
D + H I+V
Sbjct: 343 DGHTVDTRCQVFAHRPAPIQV 363
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 30.6 bits (70), Expect = 3.4
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 644 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA---------LIAGGG 694
+ + + ++ GSN LV D VV L K + AG G
Sbjct: 37 LKYAKAEDLPVLILGGGSNLLVRDGGIG------GVVIKLGKLNFIEIEGDDGLIEAGAG 90
Query: 695 APEIELSLKLTKYADTVSGIDAYCFRALIAG--GGAP 729
AP +L + +SG++ F A I G GGA
Sbjct: 91 APWHDLVRFALENG--LSGLE---FLAGIPGSVGGAV 122
>gnl|CDD|200572 cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of
Bacillus subtilis polysaccharide deacetylase PdaA, and
its bacterial homologs. The Bacillus subtilis genome
contains six polysaccharide deacetylase gene homologs:
pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH
and ylxY. This family is represented by Bacillus
subtilis pdaA gene encoding polysaccharide deacetylase
BsPdaA, which is a member of the carbohydrate esterase 4
(CE4) superfamily. BsPdaA deacetylates peptidoglycan
N-acetylmuramic acid (MurNAc) residues to facilitate the
formation of muramic delta-lactam, which is required for
recognition of germination lytic enzymes. BsPdaA
deficiency leads to the absence of muramic delta-lactam
residues in the spore cortex. Like other CE4 esterases,
BsPdaA consists of a single catalytic NodB homology
domain that appears to adopt a deformed (beta/alpha)8
barrel fold with a putative substrate binding groove
harboring the majority of the conserved residues. It
utilizes a general acid/base catalytic mechanism
involving a tetrahedral transition intermediate, where a
water molecule functions as the nucleophile tightly
associated to the zinc cofactor.
Length = 223
Score = 30.3 bits (69), Expect = 3.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 65 NDGATILKQ-MNVIHPAAKMMDHKVVVSDYSAMDRVLKEERA 105
LK+ MN +HP A + H V ++ A+D ++K+ R
Sbjct: 174 PGPEEALKKIMNQLHPGAIYLLHAVSKTNAEALDDIIKDLRK 215
>gnl|CDD|237530 PRK13843, PRK13843, conjugal transfer protein TraH; Provisional.
Length = 207
Score = 29.6 bits (67), Expect = 4.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 190 PAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVR 236
PA +F++ +G +P L V VR +LVL ++ +A+ ++R
Sbjct: 17 PAIVEQFIEAAGSPDP---LAVTVRSGGRLVLVPKPKTPDEAMALIR 60
Score = 29.6 bits (67), Expect = 4.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 635 PAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVR 681
PA +F++ +G +P L V VR +LVL ++ +A+ ++R
Sbjct: 17 PAIVEQFIEAAGSPDP---LAVTVRSGGRLVLVPKPKTPDEAMALIR 60
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 30.1 bits (68), Expect = 5.4
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 340 SAITLSTE-----TVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSL-LEAAEKLLH 393
SA +L E T+R++ D I Q I+A ++V+ AG + LE E L
Sbjct: 116 SANSLGFESDITFTLRNLEDTDAI------DQFIKANQVDKALVVGAGYISLEVLENLYE 169
Query: 394 KGIHPTTI--SDAFQK 407
+G+HPT I SD K
Sbjct: 170 RGLHPTLIHRSDKINK 185
>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 2. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
asimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 29.5 bits (67), Expect = 5.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 377 VVIVAGS---LLEAAEKLLHKGIHPTTISDAF 405
V ++GS AAEKLL G T+SD+
Sbjct: 40 RVAISGSGNVAQYAAEKLLELGAKVVTLSDSK 71
>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB. Members of
this protein are LonB, a paralog of the ATP-dependent
protease La (LonA, TIGR00763). LonB proteins are found
strictly, and almost universally, in endospore-forming
bacteria. This protease was shown, in Bacillus subtilis,
to be expressed specifically in the forespore, during
sporulation, under control of sigma(F). The lonB gene,
despite location immediately upstream of lonA, was shown
to be monocistronic. LonB appears able to act on
sigma(H) for post-translation control, but lonB mutation
did not produce an obvious sporulation defect under the
conditions tested. Note that additional paralogs of LonA
and LonB occur in the Clostridium lineage and this model
selects only one per species as the protein that
corresponds to LonB in B. subtilis [Protein fate,
Degradation of proteins, peptides, and glycopeptides,
Cellular processes, Sporulation and germination].
Length = 531
Score = 29.7 bits (67), Expect = 7.5
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 9 SKNSKSSAFKDKSK-----ATDIRNSNIGAAK----AVADAIRTSLGPRGMDKMIQASNG 59
+K + +S FK+ + AT R G A +V D I GP G+ + Q G
Sbjct: 110 AKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPG 169
Query: 60 EVTITNDGATILKQMNVIHP 79
VT + G + ++ +HP
Sbjct: 170 AVTRAHGGVLFIDEIGELHP 189
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 28.8 bits (65), Expect = 9.7
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 335 LLVSTSAITLST--------ETVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSLLE 386
+V+ + I L+ V+ +LKI +L + K+ D + + T S+
Sbjct: 59 FMVTKAHIKLNPKKLYAADGYAVKELLKITSVLYKAMKSTDGDEEENTRSLAKFD----- 113
Query: 387 AAEKLLHKGIHPTTISDAFQKAAAKCVEILTE----------MSTPITLADRENLIKSAA 436
K+ S+ ++ AA + E +S P+ LA+ E +K A
Sbjct: 114 LGSKISDLKAARQLASEITERGAALYDLLGKELDLRESRQKALSRPLELAEVEKALKEAI 173
Query: 437 TSLNSKVVSQQASL 450
+L +++ QA L
Sbjct: 174 KNLAARLQQLQAEL 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.360
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,927,837
Number of extensions: 4289297
Number of successful extensions: 4338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4161
Number of HSP's successfully gapped: 159
Length of query: 841
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 736
Effective length of database: 6,280,432
Effective search space: 4622397952
Effective search space used: 4622397952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.9 bits)