RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8873
(841 letters)
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 614 bits (1587), Expect = 0.0
Identities = 327/483 (67%), Positives = 401/483 (83%), Gaps = 35/483 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVELSKAQDIEAGDGTTSVVI+AGSLL++ KLL KGIHPT IS++FQKA K +EILT
Sbjct: 69 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 128
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
+MS P+ L+DRE L+ SAATSLNSKVVSQ +SLL+P++VDAV+KV++P T+VDL+DIK
Sbjct: 129 DMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIK 188
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+++KLGGT++D ELV+GLV TQK AN +G RVEKAKIGLIQFC+S PKTDMD+++VVSD
Sbjct: 189 IVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSD 247
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
Y MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K+K++VVKDI
Sbjct: 248 YVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDI 307
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP-AGNSRFVKISGIQNPGRTLTV 656
EREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G +PG+T+T+
Sbjct: 308 EREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTI 367
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
VVRGSNKLV++EA RS+HDALCV+RCLVK+
Sbjct: 368 VVRGSNKLVIEEAERSIHDALCVIRCLVKK------------------------------ 397
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
RALIAGGGAPEIEL+L+LT+Y+ T+SG+++YC RAFA A+EVIP TLAENAGLNPIS
Sbjct: 398 ---RALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPIS 454
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
TVTELRNRHAQGE TTGINVRKG I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD+
Sbjct: 455 TVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV 514
Query: 837 VNT 839
VNT
Sbjct: 515 VNT 517
Score = 385 bits (992), Expect = e-125
Identities = 203/277 (73%), Positives = 250/277 (90%), Gaps = 1/277 (0%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
MD+++VVSDY MDRVL+EERAYILN+VKQIKK GCNVLL+QKSILRDA+SDLA+HFL+K
Sbjct: 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIP-AGNSRFVKISGI 202
+K++VVKDIEREDIEF+CKT+ T+P+A +D F + L SA+L EE+ G+ + +KI+G
Sbjct: 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGC 358
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
+PG+T+T+VVRGSNKLV++EA RS+HDALCV+RCLVK+RALIAGGGAPEIEL+L+LT+Y
Sbjct: 359 ASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEY 418
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGA 322
+ T+SG+++YC RAFA A+EVIP TLAENAGLNPISTVTELRNRHAQGE TTGINVRKG
Sbjct: 419 SRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGG 478
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
I+NILEE VVQPLLVS SA+TL+TETVRSILKIDD++
Sbjct: 479 ISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 515
Score = 134 bits (339), Expect = 3e-33
Identities = 52/70 (74%), Positives = 60/70 (85%)
Query: 15 SAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQM 74
SA++D+ K IR SNI AAKAVADAIRTSLGP+GMDKMIQ G+VTITNDGATILKQM
Sbjct: 1 SAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQM 60
Query: 75 NVIHPAAKMM 84
V+HPAA+M+
Sbjct: 61 QVLHPAARML 70
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 610 bits (1576), Expect = 0.0
Identities = 269/485 (55%), Positives = 363/485 (74%), Gaps = 37/485 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LVE+S AQD EAGDGTTSVVI+ G+LL AAE+LL+KGIHPT I+D+FQ AA + V+IL
Sbjct: 77 MLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILL 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
EM ++L+DRE L+++A+TSL+SK+VSQ +S LAP+AVD+VLK+ + NVDL DI+
Sbjct: 137 EMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSK-NVDLNDIR 195
Query: 478 VIRKLGGTVEDTELVDGLVFTQK-SANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+++K+GGT++DTE++DG+V TQ + GP R EKAKIGLIQF ISPPK D ++ ++V+
Sbjct: 196 LVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVN 255
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
DY MD++LKEERAY+LNI K+IKKA CNVLL+QKSILRDA++DLA+HFL K+ ++VVKD
Sbjct: 256 DYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKD 315
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP--GRTL 654
IERE+IEF+ K L +PIA ++ F + L SADLVEEI + S+ V+++GI+N T+
Sbjct: 316 IEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTV 375
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
+VV+RG+N +++DE RSLHDALCV+RCLVK+
Sbjct: 376 SVVIRGANNMIIDETERSLHDALCVIRCLVKE---------------------------- 407
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
R LIAGGGAPEIE+S +L+K A ++ G+ A+ ++ FA ALEVIP TLAENAGLN
Sbjct: 408 -----RGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNS 462
Query: 775 ISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKID 834
I VTELR++H GE GI+VR+ TN EE+++QP+LVSTSAITL++E V+SIL+ID
Sbjct: 463 IKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRID 522
Query: 835 DIVNT 839
DI +
Sbjct: 523 DIAFS 527
Score = 384 bits (988), Expect = e-124
Identities = 165/278 (59%), Positives = 223/278 (80%), Gaps = 2/278 (0%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ ++V+DY MD++LKEERAY+LNI K+IKKA CNVLL+QKSILRDA++DLA+HFL K
Sbjct: 248 TENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSK 307
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ ++VVKDIERE+IEF+ K L +PIA ++ F + L SADLVEEI + S+ V+++GI+
Sbjct: 308 LNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIR 367
Query: 204 NP--GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
N T++VV+RG+N +++DE RSLHDALCV+RCLVK+R LIAGGGAPEIE+S +L+K
Sbjct: 368 NNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSK 427
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG 321
A ++ G+ A+ ++ FA ALEVIP TLAENAGLN I VTELR++H GE GI+VR+
Sbjct: 428 EARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRS 487
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
TN EE+++QP+LVSTSAITL++E V+SIL+IDDI
Sbjct: 488 GTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIA 525
Score = 131 bits (332), Expect = 3e-32
Identities = 43/70 (61%), Positives = 58/70 (82%)
Query: 15 SAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQM 74
+ FK+K K ++R +NI AA++VADAIRTSLGP+GMDKMI+ S GE+ I+NDG TILKQM
Sbjct: 9 ATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQM 68
Query: 75 NVIHPAAKMM 84
++HP A+M+
Sbjct: 69 AILHPVARML 78
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 594 bits (1534), Expect = 0.0
Identities = 156/483 (32%), Positives = 262/483 (54%), Gaps = 40/483 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SK QD GDGTT+ VI+AG LL+ A+ L+++ +HPT IS+ ++ A+ + ++
Sbjct: 79 MMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVID 138
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDI 476
E+ST I ++ L+K A TSLNSK S LA I+ +AV V + VD +I
Sbjct: 139 EISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNI 198
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
+V++K GG ++DT+L++G++ ++ + P V+ AKI L+ + K + D + +
Sbjct: 199 QVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIE 258
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D S + + L +E + +V +IK G NV++ QK I D+A H+L + + V+
Sbjct: 259 DPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAGIYAVRR 313
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
+++ D++ + K ++++D L +A+ VE++ G ++G +NP + +++
Sbjct: 314 VKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP-KAVSI 372
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
+VRG + V+DE RS+ D+L VV ++
Sbjct: 373 LVRGETEHVVDEMERSITDSLHVVASALED------------------------------ 402
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
A AGGGA E++ +L YA + G FA A+E IP LAENAGL+PI
Sbjct: 403 ---GAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPID 459
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ +LR HA+G T GINV G I ++++ V++P+ V AI +TE IL+IDD+
Sbjct: 460 ILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDV 519
Query: 837 VNT 839
+ T
Sbjct: 520 IAT 522
Score = 369 bits (950), Expect = e-118
Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 7/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D + + D S + + L +E + +V +IK G NV++ QK I D+A H+L +
Sbjct: 251 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSR 305
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K ++++D L +A+ VE++ G ++G +
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + ++++VRG + V+DE RS+ D+L VV ++ A AGGGA E++ +L YA
Sbjct: 366 NP-KAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYA 424
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
+ G FA A+E IP LAENAGL+PI + +LR HA+G T GINV G I
Sbjct: 425 QKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEI 484
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++++ V++P+ V AI +TE IL+IDD+ + +
Sbjct: 485 EDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDV-IATKSSSSSSNPPK 533
Score = 129 bits (327), Expect = 1e-31
Identities = 37/67 (55%), Positives = 49/67 (73%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D NI AA A+++++R+SLGPRGMDKM+ S G++ ITNDG TILK+M+V
Sbjct: 14 TKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVE 73
Query: 78 HPAAKMM 84
HPAAKMM
Sbjct: 74 HPAAKMM 80
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 593 bits (1532), Expect = 0.0
Identities = 167/481 (34%), Positives = 268/481 (55%), Gaps = 40/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE++K QD EAGDGTT+ V++AG LL AE+LL + IHP+ I+ + AA K EIL
Sbjct: 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILD 140
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDI 476
E++ + D E L+K AATS+ K LLA +AV+AV +V + VDL +I
Sbjct: 141 EIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNI 200
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
K +K G VE++ELV G+V ++ + PKRVE AKI LI + KT+ D K+ ++
Sbjct: 201 KFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINIT 260
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
+ L++E + ++V I + G NV+ VQK I DLA H+L K ++ V+
Sbjct: 261 SPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVRR 315
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
+++ D+E + K + + ++ PE L A++VEE + + G +NP + +T+
Sbjct: 316 VKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP-KAVTI 374
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG + V+DE R+L DA+ VV+ +++
Sbjct: 375 LIRGGTEHVIDEVERALEDAVKVVKDVMED------------------------------ 404
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
A++ GGAPEIEL+++L +YA V G +A FA AL++IP TLAENAGL+ +
Sbjct: 405 ---GAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVE 461
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD+
Sbjct: 462 MLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDV 521
Query: 837 V 837
+
Sbjct: 522 I 522
Score = 368 bits (948), Expect = e-118
Identities = 94/291 (32%), Positives = 166/291 (57%), Gaps = 6/291 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAK 307
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +
Sbjct: 308 YGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 367
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + +T+++RG + V+DE R+L DA+ VV+ +++ A++ GGAPEIEL+++L +YA
Sbjct: 368 NP-KAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
V G +A FA AL++IP TLAENAGL+ + + ++ + H GI+V +G
Sbjct: 427 KQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKP 486
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDGT 374
++LE+ +++PL V AI ++E IL+IDD++ + + G G
Sbjct: 487 ADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEGGQGGGM 537
Score = 117 bits (296), Expect = 1e-27
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TND ATIL ++++
Sbjct: 16 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQ 75
Query: 78 HPAAKMM 84
HPAAKMM
Sbjct: 76 HPAAKMM 82
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 592 bits (1528), Expect = 0.0
Identities = 159/482 (32%), Positives = 269/482 (55%), Gaps = 41/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SK QD E GDGTT+ +++G LL AE+L+ KG+H T IS+ ++ AA KC EIL
Sbjct: 31 MIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILE 90
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD--TNVDLKD 475
++ I+ D LIK A T++ K L+ + V AV +V + D L++
Sbjct: 91 TITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLEN 150
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IK+ ++ GG+++D+EL+DGLV ++ ++ N P++VE AKI L+ + KT++D ++ +
Sbjct: 151 IKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKI 210
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ M L +E + + +++ +G NV+ QK I D+A ++++K + V+
Sbjct: 211 TSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKG-----IDDMAQYYIEKAGIYAVR 265
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+++ D++ + K I LD E + +A LVEE + ++G QN + +T
Sbjct: 266 RVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNS-KAVT 324
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
V++ G + V+D +L+DAL VV +++
Sbjct: 325 VLLHGGTEHVVDSLDHALNDALHVVGVVIED----------------------------- 355
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
++ GGG+ E+ELSL+L++YA T+ G + FA+ALEVIP+ LAENAGL+PI
Sbjct: 356 ----GKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPI 411
Query: 776 STVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ ELR++H +G G+NV G + ++ E +V++PL + T AI + E IL+IDD
Sbjct: 412 DIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDD 471
Query: 836 IV 837
+V
Sbjct: 472 VV 473
Score = 369 bits (950), Expect = e-119
Identities = 94/290 (32%), Positives = 165/290 (56%), Gaps = 7/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+D ++ ++ M L +E + + +++ +G NV+ QK I D+A ++++K
Sbjct: 204 VDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGI-----DDMAQYYIEK 258
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K I LD E + +A LVEE + ++G Q
Sbjct: 259 AGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQ 318
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
N + +TV++ G + V+D +L+DAL VV +++ ++ GGG+ E+ELSL+L++YA
Sbjct: 319 NS-KAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYA 377
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T+ G + FA+ALEVIP+ LAENAGL+PI + ELR++H +G G+NV G +
Sbjct: 378 STLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEV 437
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++ E +V++PL + T AI + E IL+IDD+ V + + G G
Sbjct: 438 VDMWENDVIEPLRIKTQAINAAMEATVMILRIDDV-VASKGSANQGMGPG 486
Score = 69.1 bits (170), Expect = 3e-12
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 53 MIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
M+ S G++ ITNDGATILK+M++ HPAAKM+
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMI 32
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 590 bits (1523), Expect = 0.0
Identities = 163/481 (33%), Positives = 269/481 (55%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L+E++K Q+ E GDGTT+ V+VAG LL AE+LL + +HPT + +Q AA K E+L
Sbjct: 77 MLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLK 136
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + D+E L K A TS+ K + LA I V+AV VV+ + VD IK
Sbjct: 137 TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGK--VDKDLIK 194
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
+ +K G +++DTEL+ G++ ++ + PK+V AKI L+ I +T+ D ++ ++D
Sbjct: 195 IEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITD 254
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDI 597
+ + +++E + ++V +IK +G NVL QK I DLA H+L K ++ + +
Sbjct: 255 PAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKG-----IDDLAQHYLAKEGIVAARRV 309
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVV 657
++ D+E + K IA++ + L A LVEE + + ++P + +T++
Sbjct: 310 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHP-KAVTML 368
Query: 658 VRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAY 717
+RG+ + V++E AR++ DA+ VV C ++
Sbjct: 369 IRGTTEHVIEEVARAVDDAVGVVGCTIED------------------------------- 397
Query: 718 CFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 777
+++GGG+ E+ELS+KL +YA+ +SG + RAFA ALEVIP TLAENAGL+ I
Sbjct: 398 --GRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEI 455
Query: 778 VTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
+ ++R HA G G+NV GA+ ++ E VV+PL V T AI + E+ +L+IDD+
Sbjct: 456 LVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDV 515
Query: 837 V 837
+
Sbjct: 516 I 516
Score = 366 bits (941), Expect = e-117
Identities = 100/291 (34%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D ++ ++D + + +++E + ++V +IK +G NVL QK I DLA H+L K
Sbjct: 246 TDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI-----DDLAQHYLAK 300
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
++ + +++ D+E + K IA++ + L A LVEE + + +
Sbjct: 301 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 360
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
+P + +T+++RG+ + V++E AR++ DA+ VV C ++ +++GGG+ E+ELS+KL +YA
Sbjct: 361 HP-KAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGA 322
+ +SG + RAFA ALEVIP TLAENAGL+ I + ++R HA G G+NV GA
Sbjct: 420 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 479
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
+ ++ E VV+PL V T AI + E+ +L+IDD++ + GD
Sbjct: 480 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAPDMGDM 530
Score = 118 bits (299), Expect = 4e-28
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D + NI A + +A+ +R++LGP+GMDKM+ G+V +TNDG TIL++M+V
Sbjct: 12 MKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVE 71
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 72 HPAAKML 78
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 589 bits (1521), Expect = 0.0
Identities = 163/481 (33%), Positives = 262/481 (54%), Gaps = 42/481 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SKAQD GDGTT+ V+++G LL+ AE LL +G+HPT IS+ ++ A + +I+
Sbjct: 80 MIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIID 139
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR-DTNVDLKDI 476
E++ T D L K A T+L+ K LA + V AV V + T VD +I
Sbjct: 140 EIAEKST--DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANI 197
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
KV +K GG+V DT+ + G+V ++ + P V+ AKI LI + KT+++ KV +S
Sbjct: 198 KVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQIS 257
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D S + L +E +V++IKK+G NV+L QK I D+A H+L K + V+
Sbjct: 258 DPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRR 312
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
+++ D+E + K + + LD P L A+ VEE G+ R + G +NP + +++
Sbjct: 313 VKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP-KAVSI 371
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG V+ E R+L+DA+ VV +
Sbjct: 372 LIRGGTDHVVSEVERALNDAIRVVAITKED------------------------------ 401
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
+ GGGA E EL+++L KYA++V G + AFA+ALE+IP TLAENAG++PI+
Sbjct: 402 ---GKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPIN 458
Query: 777 TVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 836
T+ +L+ +G + G+++ + ++ + VV PL V T A+ + E IL+IDD+
Sbjct: 459 TLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDV 518
Query: 837 V 837
+
Sbjct: 519 I 519
Score = 369 bits (951), Expect = e-119
Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 6/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 250 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAK 304
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G +
Sbjct: 305 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 364
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP + +++++RG V+ E R+L+DA+ VV + + GGGA E EL+++L KYA
Sbjct: 365 NP-KAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYA 423
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
++V G + AFA+ALE+IP TLAENAG++PI+T+ +L+ +G + G+++ +
Sbjct: 424 NSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGV 483
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++ + VV PL V T A+ + E IL+IDD++ G
Sbjct: 484 GDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSGQGGQ 533
Score = 129 bits (327), Expect = 1e-31
Identities = 37/67 (55%), Positives = 53/67 (79%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ + + + +NI AAKA+ADA+RT+LGP+GMDKM+ S G++ I+NDGATILK+M+V
Sbjct: 15 TQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVE 74
Query: 78 HPAAKMM 84
HP AKM+
Sbjct: 75 HPTAKMI 81
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 589 bits (1521), Expect = 0.0
Identities = 158/482 (32%), Positives = 263/482 (54%), Gaps = 41/482 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV+++K QD E DGT + VI +G L++ AE LL+K +HPT I ++KA ++ +
Sbjct: 88 LLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQ 147
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDI 476
E++ +++ D + L K A TSL+SK V+ +A I V AV +V + D VDL +I
Sbjct: 148 ELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNI 207
Query: 477 KVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVS 536
++++K GG++ DT+LV G+V ++ + PKR+E AKI LI + K ++D ++ ++
Sbjct: 208 QIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRIN 267
Query: 537 DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKD 596
D + M + L EE I V +I G NV++ QK I ++A +L K VL V+
Sbjct: 268 DPTQMQKFLDEEENLIKEKVDKILATGANVIICQKG-----IDEVAQSYLAKKGVLAVRR 322
Query: 597 IEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTV 656
++ D+E + + R ++++D + L A L+EE G + V + G +NP +++++
Sbjct: 323 AKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNP-KSISI 381
Query: 657 VVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDA 716
++RG + ++DE R+L DAL V ++K
Sbjct: 382 LIRGGLERLVDETERALRDALGTVADVIKD------------------------------ 411
Query: 717 YCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIS 776
IAGGGA EIE++ KL KYA V G + A+A ALE + L ENAG +PI
Sbjct: 412 ---GRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPID 468
Query: 777 TVTELRNRHA-QGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDD 835
+ +LR+ H + GI++ G ++ ++ V++P LV +AI +TE +L+IDD
Sbjct: 469 LLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDD 528
Query: 836 IV 837
+V
Sbjct: 529 VV 530
Score = 363 bits (935), Expect = e-116
Identities = 94/291 (32%), Positives = 160/291 (54%), Gaps = 7/291 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+D ++ ++D + M + L EE I V +I G NV++ QK I ++A +L K
Sbjct: 260 LDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGI-----DEVAQSYLAK 314
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
VL V+ ++ D+E + + R ++++D + L A L+EE G + V + G +
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAK 374
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
NP +++++++RG + ++DE R+L DAL V ++K IAGGGA EIE++ KL KYA
Sbjct: 375 NP-KSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYA 433
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHA-QGETTTGINVRKGA 322
V G + A+A ALE + L ENAG +PI + +LR+ H + GI++ G
Sbjct: 434 PQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQ 493
Query: 323 ITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
++ ++ V++P LV +AI +TE +L+IDD++ K+ G
Sbjct: 494 PVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPG 544
Score = 129 bits (327), Expect = 1e-31
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
++ + +NI A KAV +A++++ GPRGMDKM+ S G++TITNDGATIL +M++
Sbjct: 23 SSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQ 82
Query: 78 HPAAKMM 84
HPAAK++
Sbjct: 83 HPAAKLL 89
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 582 bits (1503), Expect = 0.0
Identities = 137/486 (28%), Positives = 233/486 (47%), Gaps = 49/486 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
LV++S+AQD E GDGTTSV I+AG L++ A+ L +GI I ++KA + VE +
Sbjct: 82 TLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKIN 141
Query: 418 EMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
E++ IT RE L + A T+++SK++ A + VDAVL + ++D K
Sbjct: 142 ELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSL----DRNDLDDK 197
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQK---SANVNGPKRVEKAKIGLIQFCISPPKTDMDH 531
I + + GG +E++ ++G+ F + + PK+ KI + + +
Sbjct: 198 LIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNA 257
Query: 532 KVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKV 591
+V V ++ E I ++Q+++ G N++L + I DLA F +
Sbjct: 258 EVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLP-----IGDLATQFFADRNI 312
Query: 592 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPG 651
+ +D+ V + + ++ PEHL + L EE+ G+ R+ G
Sbjct: 313 FCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQA- 371
Query: 652 RTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTV 711
+T T+++RG + V+ E RSLHDA+ +V+ ++
Sbjct: 372 KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQN------------------------- 406
Query: 712 SGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAG 771
+ ++AGGGA E+E+S L Y+ T++G AFA+ALEVIP L ENAG
Sbjct: 407 --------KLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAG 458
Query: 772 LNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSIL 831
+ I + +LR H++GE G+ I + + V +P LV +A+ +TE IL
Sbjct: 459 FDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLIL 518
Query: 832 KIDDIV 837
+D+ +
Sbjct: 519 SVDETI 524
Score = 368 bits (948), Expect = e-118
Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 7/290 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ +V V ++ E I ++Q+++ G N++L + I DLA F
Sbjct: 255 DNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI-----GDLATQFFAD 309
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ + +D+ V + + ++ PEHL + L EE+ G+ R+ G
Sbjct: 310 RNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCP 369
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
+T T+++RG + V+ E RSLHDA+ +V+ ++ + ++AGGGA E+E+S L Y+
Sbjct: 370 QA-KTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYS 428
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T++G AFA+ALEVIP L ENAG + I + +LR H++GE G+ I
Sbjct: 429 KTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENI 488
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQDIEAGDG 373
+ + V +P LV +A+ +TE IL +D+ + ++ AG
Sbjct: 489 GDNFAKFVWEPALVKINALNSATEATNLILSVDET-ITNKGSESANAGMM 537
Score = 129 bits (328), Expect = 1e-31
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
D S+ SNI A AV +A++ +LGP G D +I SN + TI+NDGATILK ++V+
Sbjct: 17 TDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVV 76
Query: 78 HPAAKMM 84
HPAAK +
Sbjct: 77 HPAAKTL 83
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 578 bits (1493), Expect = 0.0
Identities = 175/486 (36%), Positives = 271/486 (55%), Gaps = 45/486 (9%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VELSK+QD E GDGTT VV++AG+LLE AE+LL +GIHP I+D +++AA +E L
Sbjct: 68 LMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD 127
Query: 418 EMST--PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKD 475
++S + + + E LI++A T+L SKVV+ +A IAV+AVL V + QR +VD +
Sbjct: 128 KISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQR-RDVDFEL 186
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
IKV K+GG +EDT+L+ G++ + ++ PK+VE AKI ++ PPK HK+ V
Sbjct: 187 IKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDV 246
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ + K E+ +++QIK+ G N+ + Q D A H L + + V+
Sbjct: 247 TSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWG-----FDDEANHLLLQNDLPAVR 301
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKISGIQNPGRT 653
+ +IE + R + E L A LV+EI G + + + I +N R
Sbjct: 302 WVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNS-RA 360
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
+T+ +RG NK++++EA RSLHDALCV+R L++
Sbjct: 361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRD--------------------------- 393
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
++ GGGA EI +L +++ AD ++ Y RAFA ALEVIP+ LAEN+G+N
Sbjct: 394 ------NRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMN 447
Query: 774 PISTVTELRNRHAQGETTT-GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
PI T+TE+R R + GI+ ++ ++V++ L+ I+L+T+ VR ILK
Sbjct: 448 PIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILK 507
Query: 833 IDDIVN 838
IDDI
Sbjct: 508 IDDIRK 513
Score = 358 bits (922), Expect = e-115
Identities = 97/279 (34%), Positives = 154/279 (55%), Gaps = 9/279 (3%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
HK+ V+ + K E+ +++QIK+ G N+ + Q D A H L +
Sbjct: 240 TKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGF-----DDEANHLLLQ 294
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKISG 201
+ V+ + +IE + R + E L A LV+EI G + + + I
Sbjct: 295 NDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQ 354
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
+N R +T+ +RG NK++++EA RSLHDALCV+R L++ ++ GGGA EI +L +++
Sbjct: 355 CKNS-RAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQ 413
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT-GINVRK 320
AD ++ Y RAFA ALEVIP+ LAEN+G+NPI T+TE+R R + GI+
Sbjct: 414 EADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLH 473
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ ++V++ L+ I+L+T+ VR ILKIDDI
Sbjct: 474 KGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIR 512
Score = 119 bits (300), Expect = 3e-28
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K + + S+I AAKAVA+ ++TSLGP G+DKM+ +G+VT+TNDGATIL M+V
Sbjct: 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVD 62
Query: 78 HPAAKMM 84
H AK+M
Sbjct: 63 HQIAKLM 69
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 576 bits (1487), Expect = 0.0
Identities = 130/487 (26%), Positives = 231/487 (47%), Gaps = 51/487 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
LV+++K+QD E GDGTTSV ++A L+ + + +G+HP I AF+ A V +
Sbjct: 69 TLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIK 128
Query: 418 EMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
E++ + D R+ L K A T+L+SK++SQQ + A + VDAV+ + D + L
Sbjct: 129 EIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML-----DDLLQL 183
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQK---SANVNGPKRVEKAKIGLIQFCISPPKTDMD 530
K I + + GG +E+++LV G+ F + + PK+ I L+ + +
Sbjct: 184 KMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDN 243
Query: 531 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590
++ V ++ E + + +++I +G V+L + I D+A +
Sbjct: 244 AEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLP-----IGDVATQYFADRD 298
Query: 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+ + ED++ S++ + L + EE G R+ +G
Sbjct: 299 MFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKA 358
Query: 651 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADT 710
+T T+++RG + ++E RSLHDA+ +VR +K
Sbjct: 359 -KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKN------------------------ 393
Query: 711 VSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770
+++AGGGA E+ELS L Y+ T+ G A+A+ALE+IP L +NA
Sbjct: 394 ---------DSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNA 444
Query: 771 GLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830
G + + + +LR RHAQG G+++ I + E V +P +V +A+T ++E I
Sbjct: 445 GFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLI 504
Query: 831 LKIDDIV 837
+ +D+ +
Sbjct: 505 VSVDETI 511
Score = 365 bits (939), Expect = e-117
Identities = 74/276 (26%), Positives = 137/276 (49%), Gaps = 6/276 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ ++ V ++ E + + +++I +G V+L + I D+A +
Sbjct: 242 DNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFAD 296
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ + ED++ S++ + L + EE G R+ +G
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCP 356
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
+T T+++RG + ++E RSLHDA+ +VR +K +++AGGGA E+ELS L Y+
Sbjct: 357 KA-KTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 415
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAI 323
T+ G A+A+ALE+IP L +NAG + + + +LR RHAQG G+++ I
Sbjct: 416 RTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDI 475
Query: 324 TNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ E V +P +V +A+T ++E I+ +D+ +
Sbjct: 476 ADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 511
Score = 128 bits (325), Expect = 2e-31
Identities = 36/67 (53%), Positives = 49/67 (73%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
D S+ SNI A + +A+A+RT+LGPRGMDK+I G+ TI+NDGATILK ++V+
Sbjct: 4 TDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVV 63
Query: 78 HPAAKMM 84
HPAAK +
Sbjct: 64 HPAAKTL 70
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 573 bits (1479), Expect = 0.0
Identities = 134/484 (27%), Positives = 248/484 (51%), Gaps = 43/484 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++E+S+ QD E GDGTTSV+I+AG +L AE L + +HPT + A++KA + L
Sbjct: 67 SMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLK 126
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV-VNPQRDTNVDLKD- 475
++S P+ ++R+ ++ +S+ +KV+S+ +SL IA+DAV V +D+K
Sbjct: 127 KISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKY 186
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+V + GG +ED+ ++ G++ + + + ++ +I L+ + K + + +
Sbjct: 187 ARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEI 246
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ R+L+ E YI + + I + +V++ +K ISDLA H+L + + ++
Sbjct: 247 TREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANITAIR 301
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRTL 654
+ + D + + R ++ + E + + A L+E G+ F I+ ++P +
Sbjct: 302 RVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP-KAC 360
Query: 655 TVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGI 714
T+++RG++K +L E R+L DA+ V R ++
Sbjct: 361 TILLRGASKEILSEVERNLQDAMQVCRNVLLD---------------------------- 392
Query: 715 DAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNP 774
L+ GGGA E+ ++ LT+ + ++G++ + +RA AQALEVIP TL +N G +
Sbjct: 393 -----PQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGAST 447
Query: 775 ISTVTELRNRHAQGETTT-GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
I +T LR +H Q T G+N G + ++ E + +PL V + ET +L+I
Sbjct: 448 IRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRI 507
Query: 834 DDIV 837
DDIV
Sbjct: 508 DDIV 511
Score = 356 bits (917), Expect = e-114
Identities = 81/278 (29%), Positives = 149/278 (53%), Gaps = 8/278 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ ++ R+L+ E YI + + I + +V++ +K I SDLA H+L +
Sbjct: 240 SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGI-----SDLAQHYLMR 294
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 202
+ ++ + + D + + R ++ + E + + A L+E G+ F I+
Sbjct: 295 ANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY 262
++P + T+++RG++K +L E R+L DA+ V R ++ L+ GGGA E+ ++ LT+
Sbjct: 355 KDP-KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEK 413
Query: 263 ADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT-GINVRKG 321
+ ++G++ + +RA AQALEVIP TL +N G + I +T LR +H Q T G+N G
Sbjct: 414 SKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETG 473
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ ++ E + +PL V + ET +L+IDDI+
Sbjct: 474 TLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511
Score = 126 bits (320), Expect = 7e-31
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIH 78
+ +++ NI AAK +AD IRT LGP+ M KM+ G + +TNDG IL+++ V H
Sbjct: 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 79 PAAKMM 84
PAAK M
Sbjct: 63 PAAKSM 68
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 572 bits (1477), Expect = 0.0
Identities = 136/485 (28%), Positives = 239/485 (49%), Gaps = 50/485 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKG-IHPTTISDAFQKAAAKCVEIL 416
+LV +SK QD E GDGTTSV +++ LL AEKL+ + IHP TI + ++ A+A ++ L
Sbjct: 76 VLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDAL 135
Query: 417 TEMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
T+ + + RE+LI A T+L+SK++SQ A +A +A+L++ + +L
Sbjct: 136 TKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL-----KGSTNL 190
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHK 532
+ I++I+ LGG + D+ L +G + K N PKR+E AKI + + K + K
Sbjct: 191 EHIQIIKILGGKLSDSFLDEGFILA-KKFGNNQPKRIENAKILIANTTLDTDKVKIFGTK 249
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
V + + ++ K ER + N + +I K G N + ++ I D + +
Sbjct: 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQ-----LIYDYPEQLFTDLGIN 304
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGR 652
++ + E +E + +++ D L D++EEI G F+K SG +
Sbjct: 305 SIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG-E 363
Query: 653 TLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 712
T+V+RG+ LDEA RSLHDAL V+ K+
Sbjct: 364 ACTIVLRGATDQTLDEAERSLHDALSVLSQTTKE-------------------------- 397
Query: 713 GIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGL 772
+ GGG E+ +S + A + G + AFA+AL +P LA+NAG
Sbjct: 398 -------TRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGF 450
Query: 773 NPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILK 832
+ V++LR+ G +T+G+++ G I ++ + +V+ + + ++ ++E +L+
Sbjct: 451 DSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLR 510
Query: 833 IDDIV 837
+D+I+
Sbjct: 511 VDNII 515
Score = 367 bits (944), Expect = e-118
Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 6/287 (2%)
Query: 81 AKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHF 140
K+ K V + + ++ K ER + N + +I K G N + ++ I D
Sbjct: 243 VKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQ-----LIYDYPEQL 297
Query: 141 LDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200
+ + ++ + E +E + +++ D L D++EEI G F+K S
Sbjct: 298 FTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFS 357
Query: 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 260
G + T+V+RG+ LDEA RSLHDAL V+ K+ + GGG E+ +S +
Sbjct: 358 GCKAG-EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD 416
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 320
A + G + AFA+AL +P LA+NAG + V++LR+ G +T+G+++
Sbjct: 417 TEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNN 476
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQD 367
G I ++ + +V+ + + ++ ++E +L++D+I+ + +
Sbjct: 477 GTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTAN 523
Score = 123 bits (312), Expect = 7e-30
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEV-TITNDGATILKQMNV 76
+ +A + R S A AV D ++++LGP+GMDK++Q+++ +TNDGATILK + +
Sbjct: 10 VTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPL 69
Query: 77 IHPAAKMM 84
+PAAK++
Sbjct: 70 DNPAAKVL 77
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 573 bits (1480), Expect = 0.0
Identities = 158/493 (32%), Positives = 267/493 (54%), Gaps = 53/493 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV+LSK+QD E GDGTT VV++A +LL+ A +L+ KGIHP I++ F +AA + L
Sbjct: 103 LLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLE 162
Query: 418 EMSTPITLAD----RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDL 473
E I+ ++ R+ L+++A TSL SK+VS+ A +AV+AV+ V++ R +VD
Sbjct: 163 ETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRK-DVDF 221
Query: 474 KDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRV------EKAKIGLIQFCISPPKT 527
IK+ ++GG++ D++L++G++ + ++ PK V + K+ ++ PPK
Sbjct: 222 DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP 281
Query: 528 DMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLD 587
HK+ +S ++ E+ ++ +KKAG +V++ Q D A H L
Sbjct: 282 KTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG-----FDDEANHLLL 336
Query: 588 KIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKIS 645
+ + V+ + +++E + + N R + + L + + E G + R + I
Sbjct: 337 QNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIE 396
Query: 646 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 705
+ +T+T VRGSNK+++DEA R+LHD+LCVVR LVK
Sbjct: 397 QSKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKD------------------- 436
Query: 706 KYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLT 765
++ GGGA E+ +SL +++ AD GID Y FR FAQAL+ IP+T
Sbjct: 437 --------------SRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMT 482
Query: 766 LAENAGLNPISTVTELRNRHAQGETTT-GINVRKGAITNILEENVVQPLLVSTSAITLST 824
LAEN+GL+PI T++ L+++ + + + G++ ++ E VV P + I L+T
Sbjct: 483 LAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLAT 542
Query: 825 ETVRSILKIDDIV 837
+ R ILKID+++
Sbjct: 543 QLCRMILKIDNVI 555
Score = 361 bits (928), Expect = e-115
Identities = 93/279 (33%), Positives = 156/279 (55%), Gaps = 9/279 (3%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
HK+ +S ++ E+ ++ +KKAG +V++ Q D A H L +
Sbjct: 283 TKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF-----DDEANHLLLQ 337
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNS--RFVKISG 201
+ V+ + +++E + + N R + + L + + E G + R + I
Sbjct: 338 NDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ 397
Query: 202 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
+ +T+T VRGSNK+++DEA R+LHD+LCVVR LVK ++ GGGA E+ +SL +++
Sbjct: 398 SKET-KTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSE 456
Query: 262 YADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT-GINVRK 320
AD GID Y FR FAQAL+ IP+TLAEN+GL+PI T++ L+++ + + + G++
Sbjct: 457 EADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLG 516
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
++ E VV P + I L+T+ R ILKID+++
Sbjct: 517 YGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
Score = 130 bits (329), Expect = 8e-32
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 13 KSSAFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
K K + + + S+I AA++VA I+TSLGPRG+DK++ + +GE+TITNDGATIL
Sbjct: 33 KDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILS 92
Query: 73 QMNVIHPAAKMM 84
QM + + AK++
Sbjct: 93 QMELDNEIAKLL 104
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 571 bits (1475), Expect = 0.0
Identities = 133/484 (27%), Positives = 236/484 (48%), Gaps = 49/484 (10%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV++S+ QD E GDGTTSV ++A LL AE L+ K IHP TI +++A + L
Sbjct: 70 VLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALL 129
Query: 418 EMSTPITLAD---RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLK 474
+ + R++L+ A T+L+SK+++ +AV+AVL++ + +L+
Sbjct: 130 NSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL-----KGSGNLE 184
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDM-DHKV 533
I VI+KLGG++ D+ L +G + K VN PKR+E AKI + + K + +V
Sbjct: 185 AIHVIKKLGGSLADSYLDEGFLLD-KKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRV 243
Query: 534 VVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLV 593
V + + + E+ + V++I K G N + ++ I + V+
Sbjct: 244 RVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQ-----LIYNYPEQLFGAAGVMA 298
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ + +E + ++ DH L S L+EE+ G + + SG+
Sbjct: 299 IEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALG-EA 357
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
T+V+RG+ + +LDEA RSLHDALCV+ VK
Sbjct: 358 CTIVLRGATQQILDEAERSLHDALCVLAQTVKD--------------------------- 390
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
+ GGG E+ ++ +T+ A G +A ++A+AL ++P +A+NAG +
Sbjct: 391 ------SRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYD 444
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
V +LR H++G+TT G+++++G I ++ + + V + + E IL++
Sbjct: 445 SADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRV 504
Query: 834 DDIV 837
D+I+
Sbjct: 505 DNII 508
Score = 363 bits (935), Expect = e-117
Identities = 73/279 (26%), Positives = 139/279 (49%), Gaps = 6/279 (2%)
Query: 81 AKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHF 140
K+ +V V + + + E+ + V++I K G N + ++ I +
Sbjct: 236 IKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQ-----LIYNYPEQL 290
Query: 141 LDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKIS 200
V+ ++ + +E + ++ DH L S L+EE+ G + + S
Sbjct: 291 FGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFS 350
Query: 201 GIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLT 260
G+ T+V+RG+ + +LDEA RSLHDALCV+ VK + GGG E+ ++ +T
Sbjct: 351 GVALG-EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 409
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 320
+ A G +A ++A+AL ++P +A+NAG + V +LR H++G+TT G+++++
Sbjct: 410 QLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKE 469
Query: 321 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G I ++ + + V + + E IL++D+I+
Sbjct: 470 GTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNII 508
Score = 126 bits (319), Expect = 1e-30
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQAS--NGEVTITNDGATILKQ 73
A D+ +A R S+ A A+ D ++++LGP+GMDK++ +S + + +TNDGATILK
Sbjct: 1 AGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKN 60
Query: 74 MNVIHPAAKMM 84
+ V +PAAK++
Sbjct: 61 IGVDNPAAKVL 71
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 567 bits (1465), Expect = 0.0
Identities = 129/497 (25%), Positives = 236/497 (47%), Gaps = 56/497 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+L EL+ QD E GDGTTSVVI+A LL+ A++L+ + IHPT++ ++ A + V ++
Sbjct: 68 VLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYIS 127
Query: 418 E-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV--VNPQRDTNVDLK 474
E + R+ LI +A TS++SKV+ A + VDAVL + + + +
Sbjct: 128 ENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVN 187
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVV 534
I V++ G + ++ L++G + PKR+ AKI + F + K + +VV
Sbjct: 188 SINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVV 247
Query: 535 VSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVV 594
++D +D++ + E +++I G NV+L I D+ + + + + V
Sbjct: 248 ITDPEKLDQIRQRESDITKERIQKILATGANVILTTGG-----IDDMCLKYFVEAGAMAV 302
Query: 595 KDIEREDIEFVCKTLNTRPIASLDHFLPEH------LSSADLVEEIPAGNSRFVKISGIQ 648
+ + + D++ + K +++L + E L A+ V + + + I +
Sbjct: 303 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 362
Query: 649 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 708
+ +V++RG+N + DE RSLHDALCVV+ +++
Sbjct: 363 AR-TSASVILRGANDFMCDEMERSLHDALCVVKRVLES---------------------- 399
Query: 709 DTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAE 768
++++ GGGA E LS+ L YA ++ + FA++L VIP TLA
Sbjct: 400 -----------KSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 448
Query: 769 NAGLNPISTVTELRNRHAQGET--------TTGINVRKGAITNILEENVVQPLLVSTSAI 820
NA + V +LR H + + G+++ G + + V +P +V ++
Sbjct: 449 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSL 508
Query: 821 TLSTETVRSILKIDDIV 837
+TE +IL+IDD++
Sbjct: 509 KFATEAAITILRIDDLI 525
Score = 349 bits (898), Expect = e-111
Identities = 74/290 (25%), Positives = 144/290 (49%), Gaps = 20/290 (6%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ +VV++D +D++ + E +++I G NV+L I D+ + + +
Sbjct: 242 LGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYFVE 296
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH------LSSADLVEEIPAGNSRFV 197
+ V+ + + D++ + K +++L + E L A+ V + + +
Sbjct: 297 AGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELI 356
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 257
I + + +V++RG+N + DE RSLHDALCVV+ +++ ++++ GGGA E LS+
Sbjct: 357 LIKNTKAR-TSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSI 415
Query: 258 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET----- 312
L YA ++ + FA++L VIP TLA NA + V +LR H + +
Sbjct: 416 YLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERK 475
Query: 313 ---TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G + + V +P +V ++ +TE +IL+IDD++
Sbjct: 476 NLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525
Score = 133 bits (337), Expect = 6e-33
Identities = 36/68 (52%), Positives = 51/68 (75%)
Query: 17 FKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNV 76
F D+S IR+ N+ AA ++A+ +++SLGP G+DKM+ G+VTITNDGATILK + V
Sbjct: 2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEV 61
Query: 77 IHPAAKMM 84
HPAAK++
Sbjct: 62 EHPAAKVL 69
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 565 bits (1460), Expect = 0.0
Identities = 121/484 (25%), Positives = 226/484 (46%), Gaps = 47/484 (9%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++V S Q+ E GDGT V++ AG+LLE AE+LL G+ + + + ++ A K EIL
Sbjct: 69 MIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILP 128
Query: 418 EMS--TPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKD 475
++ + L D + + TS+ SK LA + A + + + ++ +
Sbjct: 129 DLVCCSAKNLRDVDEVSSLLHTSVMSKQYGN-EVFLAKLIAQACVSIFPD--SGHFNVDN 185
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
I+V + LG V + ++ G+VF +++ V+ AKI + T+ V++
Sbjct: 186 IRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLI 243
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVK 595
+ K E + VK I G NV++ + +D+A+H+ +K +++V+
Sbjct: 244 KSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANKYNIMLVR 298
Query: 596 DIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLT 655
+ D+ +CKT+ + L+ + E + D V G+++ V + G T
Sbjct: 299 LNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIST 358
Query: 656 VVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGID 715
+V+RGS ++D+ R++ D + + L +
Sbjct: 359 IVLRGSTDNLMDDIERAVDDGVNTFKVLTRD----------------------------- 389
Query: 716 AYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPI 775
+ L+ GGGA EIEL+ ++T Y +T G++ Y + FA+A E IP LAEN+G+
Sbjct: 390 ----KRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKAN 445
Query: 776 STVTELRNRHAQGETTTGINVRKG--AITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
+++L H +G G+++ A+ ++LE V+ L AI L+T ++L++
Sbjct: 446 EVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRV 505
Query: 834 DDIV 837
D I+
Sbjct: 506 DQII 509
Score = 364 bits (937), Expect = e-117
Identities = 75/277 (27%), Positives = 141/277 (50%), Gaps = 7/277 (2%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
V++ + K E + VK I G NV++ + +D+A+H+ +K
Sbjct: 237 TKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRV-----ADMALHYANK 291
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+++V+ + D+ +CKT+ + L+ + E + D V G+++ V +
Sbjct: 292 YNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEK 351
Query: 204 NPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYA 263
G T+V+RGS ++D+ R++ D + + L + + L+ GGGA EIEL+ ++T Y
Sbjct: 352 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYG 411
Query: 264 DTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKG-- 321
+T G++ Y + FA+A E IP LAEN+G+ +++L H +G G+++
Sbjct: 412 ETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVP 471
Query: 322 AITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
A+ ++LE V+ L AI L+T ++L++D I
Sbjct: 472 AVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQI 508
Score = 124 bits (313), Expect = 5e-30
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
K S + NI A K +A RT+ GP GM+KM+ ++ +TND ATIL+++ V
Sbjct: 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQ 63
Query: 78 HPAAKMM 84
HPAAKM+
Sbjct: 64 HPAAKMI 70
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 564 bits (1455), Expect = 0.0
Identities = 135/503 (26%), Positives = 235/503 (46%), Gaps = 62/503 (12%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
ILVEL++ QD E GDGTTSVVI+A LL+ A +L+ IHPTTI F+ A + + +
Sbjct: 82 ILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFIN 141
Query: 418 E-MSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV--VNPQRDTNVDLK 474
E +ST + +E LI A TS++SK++ + + + VDA+L V N + + +K
Sbjct: 142 EVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVK 201
Query: 475 DIKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVE--KAKIGLIQFCISPPKTDMDHK 532
+ V++ G + ++ LV G A+ PKR+ KI + + + M +
Sbjct: 202 AVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQ 261
Query: 533 VVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVL 592
+ + D ++++ K E +L VK+I AG V+L K I DL + + K++
Sbjct: 262 INIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVEAKIM 316
Query: 593 VVKDIEREDIEFVCKTLNTRPIASLDHFLPE------HLSSADLVEEIPAGNSRFVKISG 646
V+ ++ED+ + + ++S+ + E +L D V + + + I G
Sbjct: 317 GVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKG 376
Query: 647 IQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 706
+ ++++RG+N LDE RSLHD+L VV+ ++
Sbjct: 377 TSKH-SSSSIILRGANDYSLDEMERSLHDSLSVVKRTLES-------------------- 415
Query: 707 YADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 766
++ GGG E L++ L +A TV + FA AL +IP TL
Sbjct: 416 -------------GNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTL 462
Query: 767 AENAGLNPISTVTELRNRHAQGET------------TTGINVRKGAITNILEENVVQPLL 814
A NA + V +LR+ HA + G+++ +G I + + V++P +
Sbjct: 463 AVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTI 522
Query: 815 VSTSAITLSTETVRSILKIDDIV 837
++ + E +IL+ID ++
Sbjct: 523 SKVKSLKSALEACVAILRIDTMI 545
Score = 351 bits (904), Expect = e-112
Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 25/308 (8%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
M ++ + D ++++ K E +L VK+I AG V+L K I DL + +
Sbjct: 258 MGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGI-----DDLCLKEFVE 312
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPE------HLSSADLVEEIPAGNSRFV 197
K++ V+ ++ED+ + + ++S+ + E +L D V + + +
Sbjct: 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECI 372
Query: 198 KISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSL 257
I G + ++++RG+N LDE RSLHD+L VV+ ++ ++ GGG E L++
Sbjct: 373 LIKGTSKH-SSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNI 431
Query: 258 KLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGET----- 312
L +A TV + FA AL +IP TLA NA + V +LR+ HA +
Sbjct: 432 YLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPED 491
Query: 313 -------TTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKA 365
G+++ +G I + + V++P + ++ + E +IL+ID + + +
Sbjct: 492 VKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTM-ITVDPE 550
Query: 366 QDIEAGDG 373
E
Sbjct: 551 PPKEDPHD 558
Score = 128 bits (325), Expect = 2e-31
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 19 DKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIH 78
+K DIRN N+ A AVA+ +++SLGP G+DKM+ G+ T+TNDGATIL ++V H
Sbjct: 18 EKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQH 77
Query: 79 PAAKMM 84
PA K++
Sbjct: 78 PAGKIL 83
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 557 bits (1438), Expect = 0.0
Identities = 122/499 (24%), Positives = 222/499 (44%), Gaps = 56/499 (11%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
+LV ++ Q I+ GDGT V+I+AG LL +EKL+ G+ I + A ++ L
Sbjct: 84 VLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELD 143
Query: 418 EMST--PITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQR----DTNV 471
EM D+ L+K ++SK + +L+ + +AV V+ +
Sbjct: 144 EMVVGEITDKNDKNELLKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYF 202
Query: 472 DLKDIKVIRKLGGTVEDTELVDGLVFTQKSA-NVNGPKRVEKAKIGLIQFCISPPKTDMD 530
++ I+V++ +GG++ ++ ++ G+VF ++ +V +K K+ + + T+
Sbjct: 203 NVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETK 262
Query: 531 HKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIK 590
V++ + M K E I ++K+I G ++ + +LA+H+L++
Sbjct: 263 GTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAG-----VGELALHYLNRYG 317
Query: 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+LV+K + ++ +C+ P+ L PE L + V+ + G R Q
Sbjct: 318 ILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGE 377
Query: 651 -GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYAD 709
RT T+++RG+ + LD+ R++ D + V+ L+K
Sbjct: 378 ISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSG--------------------- 416
Query: 710 TVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAEN 769
L+ G GA EIEL ++TKY + G+ + FA A EV+P TLAE
Sbjct: 417 ----------GKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAET 466
Query: 770 AGLNPISTVTELRNRHAQGETT--------TGINV---RKGAITNILEENVVQPLLVSTS 818
AGL+ + L H E G+++ + +I EEN+ L
Sbjct: 467 AGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKF 526
Query: 819 AITLSTETVRSILKIDDIV 837
AI ++TE ++L ID I+
Sbjct: 527 AINVATEAATTVLSIDQII 545
Score = 349 bits (899), Expect = e-111
Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 19/289 (6%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
V++ + M K E I ++K+I G ++ + +LA+H+L++
Sbjct: 261 TKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGV-----GELALHYLNR 315
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+LV+K + ++ +C+ P+ L PE L + V+ + G R Q
Sbjct: 316 YGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQ 375
Query: 204 NP-GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRA--LIAGGGAPEIELSLKLT 260
RT T+++RG+ + LD+ R++ D + V+ L+K L+ G GA EIEL ++T
Sbjct: 376 GEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRIT 435
Query: 261 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETT------- 313
KY + G+ + FA A EV+P TLAE AGL+ + L H E
Sbjct: 436 KYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHL 495
Query: 314 -TGINV---RKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDI 358
G+++ + +I EEN+ L AI ++TE ++L ID I
Sbjct: 496 YKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQI 544
Score = 125 bits (317), Expect = 2e-30
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
S A +I A + + TS+GP G +K+I G++ ITND AT+L++++++
Sbjct: 19 NSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIV 78
Query: 78 HPAAKMM 84
HPA K++
Sbjct: 79 HPAVKVL 85
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 549 bits (1417), Expect = 0.0
Identities = 121/484 (25%), Positives = 221/484 (45%), Gaps = 41/484 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++ +++ AQD GDGTTS V++ G LL+ A+ + +G+HP I++ F+ A K ++ L
Sbjct: 68 LIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLE 127
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIK 477
++ + DRE LI A TSL +KV ++ A +L VD++L + D +DL ++
Sbjct: 128 QVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQ--DEPIDLFMVE 184
Query: 478 VIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSD 537
++ + DT L+ GLV + + + KRVE A I + KT+++
Sbjct: 185 IMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKS 244
Query: 538 YSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS----ILRDAISDLAIHFLDKIKVLV 593
++++K ER +I + VK+I + V I + I ++ L K ++
Sbjct: 245 AEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIA 304
Query: 594 VKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRT 653
++ +R ++E + + SLD P+ L V E G +F I NP R+
Sbjct: 305 LRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNP-RS 363
Query: 654 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 713
+T++++G NK L + ++ D L V+ +
Sbjct: 364 VTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDD--------------------------- 396
Query: 714 IDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLN 773
++ G GA E+ ++ L KY +V G +AFA AL +IP LA+N+G +
Sbjct: 397 ------GCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFD 450
Query: 774 PISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKI 833
T+ +++ H++ G+++ G E + V + T +IL +
Sbjct: 451 LQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLV 510
Query: 834 DDIV 837
D+I+
Sbjct: 511 DEIM 514
Score = 339 bits (873), Expect = e-108
Identities = 66/280 (23%), Positives = 127/280 (45%), Gaps = 5/280 (1%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS----ILRDAISDLAIH 139
++ ++++K ER +I + VK+I + V I + I ++
Sbjct: 236 VNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLD 295
Query: 140 FLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKI 199
L K ++ ++ +R ++E + + SLD P+ L V E G +F I
Sbjct: 296 ALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFI 355
Query: 200 SGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKL 259
NP R++T++++G NK L + ++ D L V+ + ++ G GA E+ ++ L
Sbjct: 356 EKCNNP-RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEAL 414
Query: 260 TKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVR 319
KY +V G +AFA AL +IP LA+N+G + T+ +++ H++ G+++
Sbjct: 415 VKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLN 474
Query: 320 KGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G E + V + T +IL +D+I+
Sbjct: 475 TGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
Score = 124 bits (315), Expect = 3e-30
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 56/237 (23%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ ++A NI AA+ + D +RT+LGP+G KM+ + G++ +T DG +L +M +
Sbjct: 3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ 62
Query: 78 HPAAKMM-------DHKV------VVSDYSAMDRVLKEERAYILN------IVKQIKKAG 118
HP A ++ D V + LK+ YI I + + A
Sbjct: 63 HPTASLIAKVATAQDDITGDGTTSNVLIIGEL---LKQADLYISEGLHPRIITEGFEAA- 118
Query: 119 CNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKT-LNTRPIASLDHFLP 177
+ A+ FL+++KV +++RE + V +T L T+ A L L
Sbjct: 119 ---------------KEKALQFLEQVKVSK--EMDRETLIDVARTSLRTKVHAELADVLT 161
Query: 178 EH-----LSSADLVEEIPAGNSRFVKISGIQNPGRTL--TVVVRGSNKLVLDEAARS 227
E L+ E I +++ ++ T ++RG LVLD AR
Sbjct: 162 EAVVDSILAIKKQDEPIDLFMVEIMEM-----KHKSETDTSLIRG---LVLDHGARH 210
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 543 bits (1402), Expect = 0.0
Identities = 118/492 (23%), Positives = 219/492 (44%), Gaps = 44/492 (8%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++ + AQD GDGTT+VV + G LL A + + +G+HP I+D F+ A + ++ L
Sbjct: 75 LIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLD 134
Query: 418 EM--STPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRDTNVDLKD 475
E S DRE L++ A +SL +KV + +L PI DAVL V + Q D N+DL
Sbjct: 135 EFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQAD-NLDLHM 193
Query: 476 IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVV 535
+++++ + +DT + GLV + + P RV+ A + ++ + KT+++
Sbjct: 194 VEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFY 253
Query: 536 SDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS-----ILRDAISDLAIHFLDKIK 590
S D++ ER ++ +K+I V + I + I +++ K
Sbjct: 254 SSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHN 313
Query: 591 VLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+L ++ +R ++E + S++ P+ L + LV + G +F ++ +P
Sbjct: 314 ILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDP 373
Query: 651 GRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADT 710
++ T++++GS L + ++ D L V ++K + +I G GA I LS L
Sbjct: 374 -KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMN 432
Query: 711 VSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770
G AFA+AL VIP TL +N+
Sbjct: 433 ------------------------------KLGAKGKTKTGIEAFAEALLVIPKTLVKNS 462
Query: 771 GLNPISTVTELRNRH-----AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTE 825
G +P+ + + + + G+++ G + E + V +AIT +T
Sbjct: 463 GFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATG 522
Query: 826 TVRSILKIDDIV 837
++L D+++
Sbjct: 523 IASNLLLCDELL 534
Score = 326 bits (839), Expect = e-102
Identities = 62/289 (21%), Positives = 124/289 (42%), Gaps = 14/289 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKS-----ILRDAISDLAI 138
++ S D++ ER ++ +K+I V + I + I +++
Sbjct: 247 VNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSL 306
Query: 139 HFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK 198
K +L ++ +R ++E + S++ P+ L + LV + G +F
Sbjct: 307 DVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTY 366
Query: 199 ISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLK 258
++ +P ++ T++++GS L + ++ D L V ++K + +I G GA I LS
Sbjct: 367 VTENTDP-KSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRY 425
Query: 259 LTKYADT---VSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH-----AQG 310
L G AFA+AL VIP TL +N+G +P+ + + + +
Sbjct: 426 LRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDE 485
Query: 311 ETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
G+++ G + E + V +AIT +T ++L D++L
Sbjct: 486 TRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
Score = 123 bits (311), Expect = 1e-29
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ + N+ +A+ + + T+LGP+G KM+ G + +T DG +L +M +
Sbjct: 10 AESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQ 69
Query: 78 HPAAKMM 84
P A ++
Sbjct: 70 SPTAVLI 76
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 494 bits (1275), Expect = e-166
Identities = 122/512 (23%), Positives = 243/512 (47%), Gaps = 37/512 (7%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLL-EAAEKLLHKGIHPTTISDAFQKAAAKCVEIL 416
++ELS+ QD E GDGTT+V+I+AG +L + A L+ K IHP I A +KA +E++
Sbjct: 77 SMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVI 136
Query: 417 TEMSTPITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV-------VNPQRDT 469
++S P+ + + + K S+ +K V + + +A+DAV V V + +
Sbjct: 137 KQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNF 196
Query: 470 NVDLKD-IKVIRKLGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTD 528
+D+K ++V + GG V D+ ++ G++ + + + +E ++ L+ + K +
Sbjct: 197 EIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGE 256
Query: 529 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 588
+ + +R+L+ E + + +QI +++ +K +SDLA H+L K
Sbjct: 257 SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKG-----VSDLAQHYLLK 311
Query: 589 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 647
V++ +++ D + + + ++ + ++ L + G+ F +
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNC 371
Query: 648 QNP-------------------GRTLTVVVRGSNKLVLDEAARSL---HDALCVVRCLVK 685
+ P + + V +N+ ++ +L H K
Sbjct: 372 KEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGK 431
Query: 686 QRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVS 745
++ GG+ +I + + +L GGGA E+ +S+KL + A +
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLE 491
Query: 746 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 805
GI + ++A A A+E IP TL +NAG +PI +++LR +HAQG TTGI+ KG I +++
Sbjct: 492 GIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMV 551
Query: 806 EENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
+ +P ++ ++ + E+ +L++DDIV
Sbjct: 552 SYGIWEPEVIKQQSVKTAIESACLLLRVDDIV 583
Score = 279 bits (716), Expect = 4e-84
Identities = 74/339 (21%), Positives = 143/339 (42%), Gaps = 61/339 (17%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ + +R+L+ E + + +QI +++ +K +SDLA H+L K
Sbjct: 257 SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKG-----VSDLAQHYLLK 311
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 202
V++ +++ D + + + ++ + ++ L + G+ F +
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNC 371
Query: 203 QNP--------------------------------------------GRTLTVVVRGSNK 218
+ P G GS K
Sbjct: 372 KEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGK 431
Query: 219 LVLDE-----------AARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVS 267
R+L DA+ V R ++ +L GGGA E+ +S+KL + A +
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLE 491
Query: 268 GIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNIL 327
GI + ++A A A+E IP TL +NAG +PI +++LR +HAQG TTGI+ KG I +++
Sbjct: 492 GIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMV 551
Query: 328 EENVVQPLLVSTSAITLSTETVRSILKIDDILVELSKAQ 366
+ +P ++ ++ + E+ +L++DDI+ + K +
Sbjct: 552 SYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 590
Score = 126 bits (319), Expect = 2e-30
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
++++ + SNI AAKAVAD IRT LGP+ M KM+ G + +TNDG IL++++V
Sbjct: 12 QERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVA 71
Query: 78 HPAAKMM 84
HPAAK M
Sbjct: 72 HPAAKSM 78
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 136 bits (346), Expect = 1e-37
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551
+ G+V ++ + P V+ AKI LI + KT+++ KV +SD S + L +E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611
+V++IKK+G NV+L QK I D+A H+L K + V+ +++ D+E + K
Sbjct: 61 FKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGA 115
Query: 612 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+ + LD P L A+ VEE G+ R + G +N
Sbjct: 116 KIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154
Score = 104 bits (261), Expect = 5e-26
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 38 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAK 92
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G +
Sbjct: 93 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152
Query: 204 NP 205
N
Sbjct: 153 NH 154
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 129 bits (326), Expect = 1e-34
Identities = 34/184 (18%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Query: 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVL 545
+ED+ ++ G++ + + + ++ +I L+ + K + + ++ R+L
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 546 KEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV 605
+ E YI + + I + +V++ +K ISDLA H+L + V ++ + + D +
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANVTAIRRVRKTDNNRI 115
Query: 606 CKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKL 664
+ R ++ + + + + A L+E G+ F I+ ++P + T+++RG++
Sbjct: 116 ARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRGASHH 174
Query: 665 VLDE 668
Sbjct: 175 HHHH 178
Score = 95.3 bits (238), Expect = 1e-22
Identities = 28/141 (19%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
+ ++ R+L+ E YI + + I + +V++ +K ISDLA H+L +
Sbjct: 44 SQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMR 98
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHL-SSADLVEEIPAGNSRFVKISGI 202
V ++ + + D + + R ++ + + + + A L+E G+ F I+
Sbjct: 99 ANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDC 158
Query: 203 QNPGRTLTVVVRGSNKLVLDE 223
++P + T+++RG++
Sbjct: 159 KDP-KACTILLRGASHHHHHH 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.8 bits (232), Expect = 1e-19
Identities = 110/670 (16%), Positives = 215/670 (32%), Gaps = 169/670 (25%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAY--------ILNIVKQI-KKAGCNVLLVQKSILRDAIS 134
MD + Y D + E A+ + ++ K I K + +++ K +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV-SGTL 65
Query: 135 DLAIHFLDKIKVLV---VKDIEREDIEFVCKTLNTR---PIASLDHFLPEHLSSADLVEE 188
L L K + +V V+++ R + +F+ + T P ++ + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-------DR 118
Query: 189 IPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAG- 247
+ N F K + V R L L +A L A V+ I G
Sbjct: 119 LYNDNQVFAKYN-----------VSRLQPYLKLRQALLELRPAKNVL---------IDGV 158
Query: 248 GGAPEIELSLK--LTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRN 305
G+ K + D C F ++ L L +P + + L+
Sbjct: 159 LGSG------KTWVA--LDVCLSYKVQCKMDF----KIFWLNLKNCN--SPETVLEMLQK 204
Query: 306 RHAQGETTTGINVRKGAITNI-LEENVVQPLLVSTSAITLSTETVRSILKIDDILVELSK 364
Q R +NI L + +Q L + S +L + ++
Sbjct: 205 LLYQ--IDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNV----QN 255
Query: 365 AQDIEAGDG------TTSVVIVAGSLLEAAEK---LLH--KGIHPTTISDAFQKAAAKCV 413
A+ A + TT V L A L H + P + K +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYL 311
Query: 414 EILT-----EMST--PITLAD-RENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNP 465
+ E+ T P L+ E++ AT N K V+ L I +++ L V+ P
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTI-IESSLNVLEP 368
Query: 466 --QRDTNVDL----KDIKVIRKL------GGTVEDTE-LVDGLVFTQKSANVNGPKRVEK 512
R L + L D +V+ L + S V K+ ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSL-VE--KQPKE 423
Query: 513 AKIGL--IQFCISPPKTDMD--HKVVVSDYSAM------DRVLKEERAYILN-IVKQIKK 561
+ I + I + + H+ +V Y+ D + Y + I +K
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 562 AGCNVLLVQK-SILRDAISDLAIHFLD-KIK-----------VL-VVKDIEREDIEFVCK 607
++ ++ R D FL+ KI+ +L ++ ++ ++C
Sbjct: 484 IE----HPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICD 536
Query: 608 --TLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKI--SGIQNPGRTLTVVVRGSNK 663
R + ++ FLP+ +L+ S++ + + ++
Sbjct: 537 NDPKYERLVNAILDFLPKI--EENLI------CSKYTDLLRIALMAE-----------DE 577
Query: 664 LVLDEAARSL 673
+ +EA + +
Sbjct: 578 AIFEEAHKQV 587
Score = 56.4 bits (135), Expect = 4e-08
Identities = 70/487 (14%), Positives = 149/487 (30%), Gaps = 143/487 (29%)
Query: 401 ISDAFQKAAAK---CVEILTEMSTPITLADRENLIKSAATSLNSKVV-----SQQASLLA 452
I F+ A C ++ + ++ + +++I S + + S+Q ++
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 453 PIAVDAVLK-----VVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANVNGP 507
V+ VL+ +++P + + ++ ++ D D VF + NV+
Sbjct: 81 -KFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRL 134
Query: 508 KRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVL 567
+ K + L++ + P K V++ + G
Sbjct: 135 QPYLKLRQALLE--LRPAK-----NVLID---GV--------------------LGSG-- 162
Query: 568 LVQKSIL-RDAISDLAIH--FLDKIKVLVVKDIERED--IEFVCKTLNTRPIASLDHFLP 622
K+ + D + KI L +K+ + +E + + L + I
Sbjct: 163 ---KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQ-IDPNWTSRS 217
Query: 623 EHLSSADL-VEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDALCV-- 679
+H S+ L + I A R +K L LVL + +A
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSK--PYE-NCL---------LVLLN----VQNAKAWNA 261
Query: 680 --VRCLVKQRALIAGGGAPEIELSLKLTKY---ADTVSGIDAYCFRALIAGGGAPEIE-L 733
+ C + L+ T++ D +S E
Sbjct: 262 FNLSC----KILL-------------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 734 SLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE-LRN--------R 784
SL L KY + L P +S + E +R+ +
Sbjct: 305 SL-LLKYL----DCRPQDLPR--EVLTTNPRR---------LSIIAESIRDGLATWDNWK 348
Query: 785 HAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI----TLSTETVRSIL-------KI 833
H + T + + ++ N+LE + + ++ + S++ +
Sbjct: 349 HVNCDKLT--TIIESSL-NVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 834 DDIVNTL 840
+VN L
Sbjct: 405 MVVVNKL 411
Score = 47.9 bits (113), Expect = 1e-05
Identities = 47/393 (11%), Positives = 109/393 (27%), Gaps = 124/393 (31%)
Query: 8 DSKNSKSSAFKDKSKAT------DIRNSNIGAA-------------KAVADAIRTSLGPR 48
+ K K +++N+ A K V D + +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-- 286
Query: 49 GMDKMIQASNGEVTITND-GATIL------------KQMNVIHP------AAKMMDH--- 86
I + +T+T D ++L +++ +P A + D
Sbjct: 287 ---THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 87 ----KVVVSDYSAMDRVLK---------EERAY-----IL----NI-------------- 110
K V + + +++ E R + +I
Sbjct: 344 WDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 111 --VKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFV----CKTL 164
V + LV+K IS +I+ K+K+ + R ++
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 165 NTRPIASLD----HFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLV 220
+ LD + HL + + E + F+ ++ K+
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-------------QKIR 508
Query: 221 LDEAAR----SLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRA 276
D A S+ + L ++ + I + + + D + I+
Sbjct: 509 HDSTAWNASGSILNTLQQLK---FYKPYICDN---DPKYERLVNAILDFLPKIEENLIC- 561
Query: 277 FAQALEVIPLTLAENAGLNPISTVTELRNRHAQ 309
++ +++ + L + + E ++ Q
Sbjct: 562 -SKYTDLLRIAL-----MAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.9 bits (194), Expect = 5e-15
Identities = 116/689 (16%), Positives = 201/689 (29%), Gaps = 225/689 (32%)
Query: 166 TRPI----ASLDHFLP----EHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN 217
TRP+ SL+H L ++ L E+ F KI + P +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQ-------FNKI--LPEP----------TE 46
Query: 218 KLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAF 277
D+ + EL K Y ++ ++ F
Sbjct: 47 GFAADDEPTT------------------------PAELVGKFLGYVSSL--VEPSKVGQF 80
Query: 278 AQALEVIPLTLAENAGL--NPISTVTELRNRHAQGETTTGINVRKGAITNILEENVV--Q 333
Q L + LT EN L N I + E T + K I N + ++ +
Sbjct: 81 DQVLNLC-LTEFENCYLEGNDIHALA----AKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 334 PLL-VSTSAI--TLSTETVRSIL------KIDDILVELSKAQDIEAGDGTTSVVIVAGSL 384
P S SA+ + + + DD EL +D+ T V+V +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL---RDL----YQTYHVLVGDLI 188
Query: 385 LEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTPITLADRENLIKSAATSLNSKVV 444
+AE L F + + IL + P D++ L+ S S V
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQG----LNILEWLENPSNTPDKDYLL-SIPISCPLIGV 243
Query: 445 SQQASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVFTQKSANV 504
Q LA V A L P +L+ L G T GLV +A
Sbjct: 244 IQ----LAHYVVTAKLLGFTPG-----ELRSY-----LKGA---TGHSQGLV----TA-- 280
Query: 505 NGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGC 564
I+ + S + ++ + + +L + G
Sbjct: 281 ---------------VAIAETDSW------ESFFVSVRKAIT-----VLFFI------GV 308
Query: 565 NVLLVQKSILRDAISDLAIHFLDKIKV--------LVVKDIEREDIEFVCKTLNTRPIAS 616
++ ++ + D ++ L + ++ +E ++ N+
Sbjct: 309 RC---YEAYPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH---- 359
Query: 617 LDHFLPE--HLSSADLVEEIPAGNSR--FVKISGIQNPGRTLTVVVRGSNKLVLDEAARS 672
LP + + LV N V +SG P ++L G N + A S
Sbjct: 360 ----LPAGKQVEIS-LV------NGAKNLV-VSG---PPQSL----YGLNLTLRKAKAPS 400
Query: 673 LHDALCVVRCLVKQRALIAGGGAPEIELS-LKLT-----KY-ADTVSGIDAYCFRALIAG 725
D R +R + L + I+ + ++
Sbjct: 401 GLD---QSRIPFSER-------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 726 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQAL-----EVI-------PLTLAENA--- 770
+++ Y DT G D R + ++ + I T A
Sbjct: 451 NAK-----DIQIPVY-DTFDGSD---LRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 771 ---GLNPISTVTELRNRHAQGETTTGINV 796
G S + L +R+ G TG+ V
Sbjct: 502 LDFGPGGASGLGVLTHRNKDG---TGVRV 527
Score = 73.9 bits (181), Expect = 2e-13
Identities = 118/673 (17%), Positives = 207/673 (30%), Gaps = 252/673 (37%)
Query: 154 REDIEFVCKTLN--TRPIASLDHFLPEHLSSADLVEEIPAGNSRFVK-ISGIQNP---GR 207
+E +F K L T A+ D E + A+LV +F+ +S + P G+
Sbjct: 34 QE--QFN-KILPEPTEGFAADD----EPTTPAELV-------GKFLGYVSSLVEPSKVGQ 79
Query: 208 TLTVVVRGSNKLVLDEAARS------LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTK 261
V+ L L E +H AL A KL +
Sbjct: 80 FDQVL-----NLCLTEFENCYLEGNDIH-------------ALAA-----------KLLQ 110
Query: 262 YADTVSGIDAYCFRAFAQALEVI--PLTLAENAGLNPISTVTELRNRHAQ-GETTT---- 314
DT + + A + P N+ L R G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----------RAVGEGNAQLVAIF 160
Query: 315 -GINVRKGAITNILEE-----NVVQPL---LVSTSAITLSTETVRSILKID-------DI 358
G +G + EE L L+ SA TLS E +R+ L + +I
Sbjct: 161 GG----QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNI 215
Query: 359 LVELSKAQDIEAGDGTTSV-----VIVAGSLL--EAAEKLLHKGIHPTTISDAFQKAAAK 411
L L + D S+ +I L KLL G P + + A
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL--GFTPGELRSYLK-GATG 272
Query: 412 CVE-ILTEMSTPITLAD-RENLIKSAATSLNSKVV------SQQA---SLLAPIAV-DAV 459
+ ++T + I D E+ S ++ V+ +A + L P + D++
Sbjct: 273 HSQGLVT--AVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 460 ----------LKVVNPQRDTNVDLKDI-KVIRKLGGTVEDTELVDGLVFTQKS-ANVNGP 507
L + +N+ + + + K + + V + VNG
Sbjct: 329 ENNEGVPSPMLSI------SNLTQEQVQDYVNKTNSHLPAGKQV--------EISLVNGA 374
Query: 508 KRVEKAKIGLIQFCIS-PPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 566
K +S PP+ S Y ++ L++ +A +G +
Sbjct: 375 K----------NLVVSGPPQ---------SLY-GLNLTLRKAKA----------PSGLD- 403
Query: 567 LLVQKSI------LRDAISDLAI------HFLDKIKVLVVKDIEREDIEFVCKTLNTRPI 614
Q I L+ + L + H L L+ KD+ + ++ F
Sbjct: 404 ---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF---------- 450
Query: 615 ASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSN-KLVLDEAARSL 673
++ D+ +IP V T GS+ +++ + +
Sbjct: 451 -----------NAKDI--QIP------VY--------DTFD----GSDLRVLSGSISERI 479
Query: 674 HDALCVVRC----LVKQRA---LIAG-GGAPEIELSLKLTKYADTVSGIDAYCFRALIAG 725
D + + + +A L G GGA + LT +G+ R ++AG
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLG---VLTHRNKDGTGV-----RVIVAG 531
Query: 726 --GGAPEIELSLK 736
P+ + K
Sbjct: 532 TLDINPDDDYGFK 544
Score = 59.7 bits (144), Expect = 4e-09
Identities = 47/291 (16%), Positives = 100/291 (34%), Gaps = 87/291 (29%)
Query: 268 GIDAYCFRAFAQALEV---IPLTLAENAGL--------NPIS-TVTELRNRHAQGETTTG 315
G+D Y + A +V + G NP++ T+ H GE
Sbjct: 1632 GMDLY--KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI------HFGGEKGKR 1683
Query: 316 INVRKGAIT-------NILEENVVQPLLVSTSAITLS--------TE-TVRSILKIDDIL 359
I A+ + E + + + +++ T T+ T ++ L
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT-----L 1738
Query: 360 VELSKAQDIEAGDGTTSVVIVAG-SL--------------LEAAEKLLHK-GIHPTTISD 403
+E + +D+++ + AG SL +E+ +++ G+ T+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM---TMQV 1795
Query: 404 AFQK--AAAKCVEIL----TEMSTPITLADRENLIKSAATSLNSKVVS--------QQ-- 447
A + ++ ++ + + +++ +V QQ
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR-TGWLVEIVNYNVENQQYV 1854
Query: 448 -ASLLAPIAVDAVLKVVNPQRDTNVDLKDIKVIRKLGGTVEDTELVDGLVF 497
A L A+D V V+N + L+ I +I +L ++ E V+G +F
Sbjct: 1855 AAGDLR--ALDTVTNVLN-----FIKLQKIDII-ELQKSLS-LEEVEGHLF 1896
Score = 54.7 bits (131), Expect = 1e-07
Identities = 39/222 (17%), Positives = 66/222 (29%), Gaps = 83/222 (37%)
Query: 147 LVVKDIEREDIEFVCKTLNTRPIASLDHFLPE--HLSSADLVEEIPAGNSR--FVKISGI 202
L + ++ +E ++ N+ LP + + LV N V +SG
Sbjct: 339 LSISNLTQEQVQDYVNKTNSH--------LPAGKQVEIS-LV------NGAKNLV-VSG- 381
Query: 203 QNPGRTLTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGG-----GAP------ 251
P ++L G N + A S D R +R L +P
Sbjct: 382 --PPQSL----YGLNLTLRKAKAPSGLD---QSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 252 --------------EIEL---SLKLTKYADTVSGIDAYCFRAFAQAL-----EVI----- 284
+ +++ Y DT G D R + ++ + I
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSD---LRVLSGSISERIVDCIIRLPV 488
Query: 285 --PLTLAENA------GLNPISTVTELRNRHAQGETTTGINV 318
T A G S + L +R+ G TG+ V
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDG---TGVRV 527
Score = 45.4 bits (107), Expect = 8e-05
Identities = 58/317 (18%), Positives = 102/317 (32%), Gaps = 103/317 (32%)
Query: 79 PAAKMMDHKVVVSDYSAMDRVLKEERAY-ILNIVKQIKKAGCNVLLVQKSILRDAISDLA 137
AA+ V ++ D K+ + IL+IV + +L
Sbjct: 1640 KAAQ----DV----WNRADNHFKDTYGFSILDIV------------------INNPVNLT 1673
Query: 138 IHFLDKIKVLVVKDIERED-IEFVCKTLNTRPIASLDHF--LPEHLSSADLVEEIPAG-- 192
IHF + K I RE+ + +T+ + + F + EH +S G
Sbjct: 1674 IHFGGEKG----KRI-RENYSAMIFETIVDGKLKTEKIFKEINEHSTS--YTFRSEKGLL 1726
Query: 193 ----NS------------RFVKISGIQNPGRTLTVVVRG-SNKLVLDE----AAR----S 227
+ +K G+ G S L E A+ S
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPAD----ATFAGHS----LGEYAALASLADVMS 1778
Query: 228 LHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKY---ADTVSGIDAYCFRAFAQ-ALEV 283
+ V +V R + P EL + Y A + A +F+Q AL+
Sbjct: 1779 IESL---VE-VVFYRGMTMQVAVPRDELGR--SNYGMIAINPGRVAA----SFSQEALQY 1828
Query: 284 IPLTLAENAGLNPISTVTELRN---RHAQ----GETTTGINVRKGAITNILEENVVQPLL 336
+ + + G + E+ N + Q G+ ++ +TN+L +Q +
Sbjct: 1829 VVERVGKRTGW-----LVEIVNYNVENQQYVAAGDLR-ALD----TVTNVLNFIKLQKID 1878
Query: 337 VSTSAITLSTETVRSIL 353
+ +LS E V L
Sbjct: 1879 IIELQKSLSLEEVEGHL 1895
Score = 45.0 bits (106), Expect = 1e-04
Identities = 43/278 (15%), Positives = 74/278 (26%), Gaps = 96/278 (34%)
Query: 618 DHFLPEHL--SSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDE-----AA 670
D+ + S D+V NP LT+ G + E
Sbjct: 1650 DNHFKDTYGFSILDIVIN---------------NP-VNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 671 RSLHDALCVVRCLVKQ-----RALIAGGGAPEIELSLKLTKYAD----TVS--------- 712
++ D + K+ + + L L T++ +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRS--EK-GL-LSATQFTQPALTLMEKAAFEDLKS 1749
Query: 713 -GI---DAYC-------FRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFR--AFAQAL 759
G+ DA + AL + IE +++ Y R A+
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY------------RGMTMQVAV 1797
Query: 760 EVIPLTLAEN--AGLNPISTVTELRNRHAQ------GETTTGI------NVR-------- 797
L + +NP Q G+ T + NV
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 798 -KGAI---TNILEENVVQPLLVSTSAITLSTETVRSIL 831
A+ TN+L +Q + + +LS E V L
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 43.5 bits (102), Expect = 3e-04
Identities = 38/255 (14%), Positives = 79/255 (30%), Gaps = 84/255 (32%)
Query: 458 AVLKVV--NPQRDT-NVDLKDIKVIRKLGGTVEDTELVDGLVF-TQKSANVNGPKRVEKA 513
++L +V NP T + + K IR E ++F T + K ++
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIR---------ENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 514 KIGLIQFCISPPKTDMDHK-------VVVSDYSAMDRVLKEE------------------ 548
+ K + ++ +A LK +
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLME-KAAF-EDLKSKGLIPADATFAGHSLGEYA 1768
Query: 549 ----RAYILNI---VKQIKKAGCNVLLVQKSILRDAI--SDLAIHFLDKIKVLVVKDIER 599
A +++I V+ + G + +Q ++ RD + S+ + ++ +V +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRG---MTMQVAVPRDELGRSNYGMIAINPGRV--AASFSQ 1823
Query: 600 EDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQN-PGRTLTVVV 658
E +++V + + R + LVE N + N + V
Sbjct: 1824 EALQYVVERVGKR--------------TGWLVE--IV-N--Y-------NVENQ--QYVA 1855
Query: 659 RGSNKLVLDEAARSL 673
G + LD L
Sbjct: 1856 AGDLR-ALDTVTNVL 1869
Score = 35.8 bits (82), Expect = 0.073
Identities = 46/292 (15%), Positives = 88/292 (30%), Gaps = 114/292 (39%)
Query: 17 FKDKSKATDIRNSNIGAAKAVA-------------DAIRTS--LGPRGMD---------K 52
+ K + + A A+A AI +G R +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 53 MIQAS--NGE------VTITNDGAT------ILKQMNVIHPAAKMM--------DHKVVV 90
+++ S N E ++I+ T + + N PA K + + +VV
Sbjct: 323 ILEDSLENNEGVPSPMLSIS--NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LVV 379
Query: 91 S----DYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSI------LRDAISDLAI-- 138
S ++ L++ +A +G + Q I L+ + L +
Sbjct: 380 SGPPQSLYGLNLTLRKAKA----------PSGLD----QSRIPFSERKLKFSNRFLPVAS 425
Query: 139 ----HFLDKIKVLVVKDIEREDIEF--------VCKTLNTRPIASLDHFLPEHLSSADLV 186
H L L+ KD+ + ++ F V T + + L + E +V
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE-----RIV 480
Query: 187 EEI----------------------PAGNSRFVKISGIQNPGRTLTVVVRGS 216
+ I P G S ++ G + V+V G+
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 39.1 bits (92), Expect = 0.006
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGI 747
A+I G A E EL K ++ D ++ A ++ GGG + + + + G
Sbjct: 375 AVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGD 434
Query: 748 DAYCFRAFAQALEVIPL-TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILE 806
+A + +ALE P +AENAG S + + + G N G +++E
Sbjct: 435 EATGAKIVRRALEE-PARQIAENAGYEG-SVIVQ-QILAETKNPRYGFNAATGEFVDMVE 491
Query: 807 ENVVQPLLVSTSAI 820
+V P V+ SA+
Sbjct: 492 AGIVDPAKVTRSAL 505
Score = 39.1 bits (92), Expect = 0.007
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
AVA+A++ +LGPRG + +++ G TIT DG T+ K
Sbjct: 21 AVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAK 57
Score = 37.5 bits (88), Expect = 0.017
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SK D+ AGDGTT+ ++A +++ K + G +P + +KA VE + ++ P
Sbjct: 78 SKTNDV-AGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIP 136
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKV 462
+ DR+ + + A S N V + IA DA+ KV
Sbjct: 137 VE--DRKAIEEVATISANDPEVGKL------IA-DAMEKV 167
Score = 37.1 bits (87), Expect = 0.024
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPL-TL 288
DAL R V + ++ GGG + + + + G +A + +ALE P +
Sbjct: 396 DALNATRAAV-EEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEE-PARQI 453
Query: 289 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 342
AENAG S + + + G N G +++E +V P V+ SA+
Sbjct: 454 AENAGYEG-SVIVQ-QILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSAL 505
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 39.1 bits (92), Expect = 0.006
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
A+ADA++ +LGP+G + +++ G TITNDG +I K
Sbjct: 21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAK 57
Score = 37.9 bits (89), Expect = 0.014
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
K D+ AGDGTT+ ++A +L+ + + G +P + +KA K E L + +
Sbjct: 78 KKTDDV-AGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKE 136
Query: 423 ITLADRENLIKSAATSLNSKVV 444
+ +E + +AA S + +
Sbjct: 137 VE--TKEQIAATAAISAGDQSI 156
Score = 34.4 bits (80), Expect = 0.15
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKY---ADTV 744
A+I G A E+EL + + D V A ++AGGG ++ + L + D
Sbjct: 375 AVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDELKLEGDEA 434
Query: 745 SGIDAYCFRAFAQALEVIPL-TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITN 803
+G + ALE PL +A N+GL P ++RN G+N + G +
Sbjct: 435 TGANI-----VKVALEA-PLKQIAFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYED 484
Query: 804 ILEENVVQPLLVSTSAI 820
+L V P+ V+ SA+
Sbjct: 485 LLAAGVADPVKVTRSAL 501
Score = 32.1 bits (74), Expect = 0.82
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKY---ADTVSGIDAYCFRAFAQALEVIPL 286
DA+ + V + ++AGGG ++ + L + D +G + ALE PL
Sbjct: 396 DAVRNAKAAV-EEGIVAGGGVTLLQAAPTLDELKLEGDEATGANI-----VKVALEA-PL 448
Query: 287 -TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 342
+A N+GL P ++RN G+N + G ++L V P+ V+ SA+
Sbjct: 449 KQIAFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLAAGVADPVKVTRSAL 501
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 39.1 bits (92), Expect = 0.006
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + +I S G IT DG ++ K
Sbjct: 22 ILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAK 58
Score = 38.7 bits (91), Expect = 0.008
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
S+ D AGDGTT+ ++A +++ K + G++P + A AK VE + + P
Sbjct: 79 SRTNDE-AGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARP 137
Query: 423 ITLADRENLIKSAATSLNS 441
+ D + + S N
Sbjct: 138 VN--DSSEVAQVGTISANG 154
Score = 34.1 bits (79), Expect = 0.20
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKY----ADT 743
A+I GG EIE+ + + D ++ A ++ GGG ++ + L +D
Sbjct: 377 AVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQ 436
Query: 744 VSGIDAYCFRAFAQALEVIPL-TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 802
+GI +ALE P+ +AENAG++ ++R + G N +
Sbjct: 437 DAGIAI-----IRRALEA-PMRQIAENAGVDGAVVAGKVRE---SSDKAFGFNAQTEEYG 487
Query: 803 NILEENVVQPLLVSTSAI 820
++ + V+ P V +A+
Sbjct: 488 DMFKFGVIDPAKVVRTAL 505
Score = 31.4 bits (72), Expect = 1.3
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKY----ADTVSGIDAYCFRAFAQALEVIP 285
DAL R V Q ++ GGG ++ + L +D +GI +ALE P
Sbjct: 398 DALNATRAAV-QEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAI-----IRRALEA-P 450
Query: 286 L-TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 342
+ +AENAG++ ++R + G N + ++ + V+ P V +A+
Sbjct: 451 MRQIAENAGVDGAVVAGKVRE---SSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTAL 505
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 38.7 bits (91), Expect = 0.008
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 36 AVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILK 72
+ADA++ +LGP+G + ++ S G TIT DG ++ +
Sbjct: 21 VLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAR 57
Score = 37.9 bits (89), Expect = 0.015
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 363 SKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILTEMSTP 422
SKA D AGDGTT+ ++A +++ K + G++P + KA VE L +S P
Sbjct: 78 SKANDA-AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP 136
Query: 423 ITLADRENLIKSAATSLNS 441
+ D + + + S NS
Sbjct: 137 CS--DSKAIAQVGTISANS 153
Score = 34.1 bits (79), Expect = 0.19
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 688 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLTKY----ADT 743
A+I G A E+E+ K + D + A ++AGGG I ++ KL AD
Sbjct: 376 AVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNADQ 435
Query: 744 VSGIDAYCFRAFAQALEVIPL-TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAIT 802
GI +A+E PL + N G P ++ G+ G N
Sbjct: 436 NVGIKV-----ALRAMEA-PLRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYG 485
Query: 803 NILEENVVQPLLVSTSAI 820
N+++ ++ P V+ SA+
Sbjct: 486 NMIDMGILDPTKVTRSAL 503
Score = 32.5 bits (75), Expect = 0.70
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 230 DALCVVRCLVKQRALIAGGGAPEIELSLKLTKY----ADTVSGIDAYCFRAFAQALEVIP 285
DAL R V + ++AGGG I ++ KL AD GI +A+E P
Sbjct: 397 DALHATRAAV-EEGVVAGGGVALIRVASKLADLRGQNADQNVGIKV-----ALRAMEA-P 449
Query: 286 L-TLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAI 342
L + N G P ++ G+ G N N+++ ++ P V+ SA+
Sbjct: 450 LRQIVLNCGEEPSVVANTVKG----GDGNYGYNAATEEYGNMIDMGILDPTKVTRSAL 503
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.039
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 27/54 (50%)
Query: 685 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIELSLKLT 738
KQ AL +++ SLKL YAD D+ AP L++K T
Sbjct: 19 KQ-AL------KKLQASLKL--YAD-----DS-----------AP--ALAIKAT 45
Score = 32.6 bits (73), Expect = 0.22
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 27/55 (49%)
Query: 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGL 294
KQ AL +++ SLKL YAD D+ A AL + A +
Sbjct: 19 KQ-AL------KKLQASLKL--YAD-----DS------APALAI-------KATM 46
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 35.6 bits (83), Expect = 0.067
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 354 KIDDILVELSKAQDIEAGDGTTSVV---IVAGSLLEAAEKLLHKGI-----HPTTI---- 401
KI+ ++ + E D VV IVA S L A + L +GI TI
Sbjct: 273 KIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFD 332
Query: 402 SDAFQKAAAKCVEILT-EMST 421
+ ++ A + ++ EM+
Sbjct: 333 FELIERIAERVDKLYVPEMNL 353
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Length = 247
Score = 32.1 bits (72), Expect = 0.66
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 153 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 211
+ +E++ +N I +D FL + + +E+ A ++ + + +
Sbjct: 12 LKLALEYIVPCMNKHGICVVDDFLGKETGQQ-IGDEVRALHDTGKFTDGQLVSQKSDSSK 70
Query: 212 VVRGSNKLVLDE 223
+RG ++
Sbjct: 71 DIRGDKITWIEG 82
Score = 32.1 bits (72), Expect = 0.66
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 598 EREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPA-GNSRFVKISGIQNPGRTLTV 656
+ +E++ +N I +D FL + + +E+ A ++ + + +
Sbjct: 12 LKLALEYIVPCMNKHGICVVDDFLGKETGQQ-IGDEVRALHDTGKFTDGQLVSQKSDSSK 70
Query: 657 VVRGSNKLVLDE 668
+RG ++
Sbjct: 71 DIRGDKITWIEG 82
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.0 bits (66), Expect = 7.0
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 348 TVRSILKIDDILVELSKAQDIEAGDGTTSVVIVAGSL-LEAAEKLLHKGIHPTTI 401
++ + E KA+ I +I +G + E AE ++ + I
Sbjct: 132 LCKNYNDAKKLFEEAPKAKTI--------TIIGSGYIGAELAEAYSNQNYNVNLI 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.360
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,471,153
Number of extensions: 820467
Number of successful extensions: 2343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 140
Length of query: 841
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 739
Effective length of database: 3,853,851
Effective search space: 2847995889
Effective search space used: 2847995889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)