RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8873
(841 letters)
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 131 bits (331), Expect = 4e-36
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 494 GLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYIL 553
G+V ++ + PKRVE AKI LI + KT+ D K+ ++ + L++E +
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLK 61
Query: 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 613
++V I + G NV+ VQK I DLA H+L K ++ V+ +++ D+E + K +
Sbjct: 62 DMVDHIAQTGANVVFVQKG-----IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKI 116
Query: 614 IASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
+ ++ PE L A++VEE + + G +NP
Sbjct: 117 VTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP 153
Score = 96.2 bits (239), Expect = 8e-24
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D K+ ++ + L++E + ++V I + G NV+ VQK I DLA H+L K
Sbjct: 37 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGI-----DDLAQHYLAK 91
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
++ V+ +++ D+E + K + + ++ PE L A++VEE + + G +
Sbjct: 92 YGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 151
Query: 204 NP 205
NP
Sbjct: 152 NP 153
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 127 bits (320), Expect = 9e-35
Identities = 38/157 (24%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 494 GLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAYIL 553
G++ ++ + P V+ AKI L+ + K + D + + D S + + L +E +
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 60
Query: 554 NIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRP 613
+V +IK G NV++ QK I D+A H+L + + V+ +++ D++ + K
Sbjct: 61 EMVDKIKSVGANVVITQKG-----IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASI 115
Query: 614 IASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQNP 650
++++D L +A+ VE++ G ++G +NP
Sbjct: 116 VSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP 152
Score = 94.3 bits (234), Expect = 3e-23
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
D + + D S + + L +E + +V +IK G NV++ QK I D+A H+L +
Sbjct: 36 FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI-----DDMAQHYLSR 90
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISGIQ 203
+ V+ +++ D++ + K ++++D L +A+ VE++ G ++G +
Sbjct: 91 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 150
Query: 204 NP 205
NP
Sbjct: 151 NP 152
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 125 bits (314), Expect = 7e-34
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 492 VDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKEERAY 551
+ G+V ++ + P V+ AKI LI + KT+++ KV +SD S + L +E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 552 ILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNT 611
+V++IKK+G NV+L QK I D+A H+L K + V+ +++ D+E + K
Sbjct: 61 FKQMVEKIKKSGANVVLCQKG-----IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGA 115
Query: 612 RPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 646
+ + LD P L A+ VEE G+ R + G
Sbjct: 116 KIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG 150
Score = 88.1 bits (218), Expect = 5e-21
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 84 MDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDK 143
++ KV +SD S + L +E +V++IKK+G NV+L QK I D+A H+L K
Sbjct: 38 IEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGI-----DDVAQHYLAK 92
Query: 144 IKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSADLVEEIPAGNSRFVKISG 201
+ V+ +++ D+E + K + + LD P L A+ VEE G+ R + G
Sbjct: 93 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG 150
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 121 bits (304), Expect = 2e-32
Identities = 33/174 (18%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 488 DTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHKVVVSDYSAMDRVLKE 547
D+ ++ G++ + + + ++ +I L+ + K + + ++ R+L+
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 548 ERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCK 607
E YI + + I + +V++ +K ISDLA H+L + V ++ + + D + +
Sbjct: 61 EEEYIHQLCEDIIQLKPDVVITEKG-----ISDLAQHYLMRANVTAIRRVRKTDNNRIAR 115
Query: 608 TLNTRPIASLDHFLPEH-LSSADLVEEIPAGNSRFVKISGIQNPGRTLTVVVRG 660
R ++ + + + A L+E G+ F I+ ++P + T+++RG
Sbjct: 116 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP-KACTILLRG 168
Score = 78.9 bits (194), Expect = 1e-17
Identities = 29/151 (19%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Query: 66 DGATILKQMNVIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQ 125
I+ + + + ++ R+L+ E YI + + I + +V++ +
Sbjct: 24 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 83
Query: 126 KSILRDAISDLAIHFLDKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEH-LSSAD 184
K I SDLA H+L + V ++ + + D + + R ++ + + + A
Sbjct: 84 KGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAG 138
Query: 185 LVEEIPAGNSRFVKISGIQNPGRTLTVVVRG 215
L+E G+ F I+ ++P + T+++RG
Sbjct: 139 LLEIKKIGDEYFTFITDCKDP-KACTILLRG 168
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 110 bits (275), Expect = 1e-27
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 674 HDALCVVRCLVKQR-ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAGGGAPEIE 732
A+ + L+KQ L+ G P + + + ID ++ + GGGA E E
Sbjct: 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAE 140
Query: 733 LSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTT 792
L+++L KYA++V G + AFA+ALE+IP TLAENAG++PI+T+ +L+ +G +
Sbjct: 141 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 200
Query: 793 GINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
G+++ + ++ + VV PL V T A+ + E IL+IDD++
Sbjct: 201 GVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245
Score = 102 bits (254), Expect = 7e-25
Identities = 51/151 (33%), Positives = 91/151 (60%)
Query: 209 LTVVVRGSNKLVLDEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSG 268
T++ +G + V+ R + + + +++ + GGGA E EL+++L KYA++V G
Sbjct: 95 ETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGG 154
Query: 269 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILE 328
+ AFA+ALE+IP TLAENAG++PI+T+ +L+ +G + G+++ + ++
Sbjct: 155 REQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKA 214
Query: 329 ENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ VV PL V T A+ + E IL+IDD++
Sbjct: 215 KGVVDPLRVKTHALESAVEVATMILRIDDVI 245
Score = 83.2 bits (205), Expect = 3e-18
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 20 KSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHP 79
+ + + + +NI AAKA+ADA+RT+LGP+GMDKM+ S G++ I+NDGATILK+M+V HP
Sbjct: 1 REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHP 60
Query: 80 AAKMMDHKVVVSDYSA 95
AKM+ D +
Sbjct: 61 TAKMIVEVSKAQDTAV 76
Score = 59.4 bits (143), Expect = 3e-10
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 358 ILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEILT 417
++VE+SKAQD GDGTT+ V+++G LL+ AE LL +G+HPT IS+ ++ A + +I+
Sbjct: 64 MIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIID 123
Query: 418 EMSTPITLADRENLIKSAATSLNSKVVSQQAS-LLAPIAVDAVLKVVNPQRDTNVDLKDI 476
E++ L + A L S LA A L+++ N + I
Sbjct: 124 EIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPI 183
Query: 477 KVIRKLGGTVEDTELVDGLVFT------QKSANVNGPKRVEKAKI 515
+ KL E + G+ K+ V P RV+ +
Sbjct: 184 NTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHAL 228
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 108 bits (271), Expect = 4e-27
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 668 EAARSLHDALCVVRCLVKQ--RALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRALIAG 725
A+ + L++Q + I ++ + A AG
Sbjct: 71 FVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAG 130
Query: 726 GGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRH 785
GGA E++ +L YA + G FA A+E IP LAENAGL+PI + +LR H
Sbjct: 131 GGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEH 190
Query: 786 AQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
A+G T GINV G I ++++ V++P+ V AI +TE IL+IDD++
Sbjct: 191 AKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242
Score = 107 bits (267), Expect = 1e-26
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 243 ALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTE 302
A AGGGA E++ +L YA + G FA A+E IP LAENAGL+PI + +
Sbjct: 126 AYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLK 185
Query: 303 LRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
LR HA+G T GINV G I ++++ V++P+ V AI +TE IL+IDD++
Sbjct: 186 LRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242
Score = 87.8 bits (217), Expect = 5e-20
Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
D NI AA A+++++R+SLGPRGMDKM+ S G++ ITNDG TILK+M+V HPAAKMM
Sbjct: 2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMM 61
Query: 85 DHKVVVSDYSA 95
D
Sbjct: 62 VEVSKTQDSFV 72
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 84.8 bits (209), Expect = 8e-19
Identities = 43/148 (29%), Positives = 69/148 (46%)
Query: 18 KDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVI 77
+ D + NI AA+ +A+ +RT+LGP+GMDKM+ S G++ +TND ATIL ++++
Sbjct: 8 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQ 67
Query: 78 HPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLA 137
HPAAKMM D A D + K + N+ + ++ A
Sbjct: 68 HPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKA 127
Query: 138 IHFLDKIKVLVVKDIEREDIEFVCKTLN 165
LD+I + V + L+
Sbjct: 128 QEILDEIAIRAVLPAGGAPEIELAIRLD 155
Score = 80.6 bits (198), Expect = 2e-17
Identities = 49/127 (38%), Positives = 78/127 (61%)
Query: 711 VSGIDAYCFRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENA 770
+D RA++ GGAPEIEL+++L +YA V G +A FA AL++IP TLAENA
Sbjct: 128 QEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENA 187
Query: 771 GLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSI 830
GL+ + + ++ + H GI+V +G ++LE+ +++PL V AI ++E I
Sbjct: 188 GLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 247
Query: 831 LKIDDIV 837
L+IDD++
Sbjct: 248 LRIDDVI 254
Score = 76.4 bits (187), Expect = 5e-16
Identities = 48/120 (40%), Positives = 76/120 (63%)
Query: 240 KQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPIST 299
RA++ GGAPEIEL+++L +YA V G +A FA AL++IP TLAENAGL+ +
Sbjct: 135 AIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEM 194
Query: 300 VTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIL 359
+ ++ + H GI+V +G ++LE+ +++PL V AI ++E IL+IDD++
Sbjct: 195 LVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 254
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 79.1 bits (195), Expect = 2e-18
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDIKVIRKLGGT 485
++ L+K A TSLNSK S LA I+ +AV V + VD +I+V++K GG
Sbjct: 4 EKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGA 63
Query: 486 VEDTELVDGLVFTQK-----SANVNGPKRVEKAKIGLI 518
++DT+L++ V + + + + ++
Sbjct: 64 IDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVV 100
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 78.0 bits (192), Expect = 5e-18
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 423 ITLADRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNP-QRDTNVDLKDIKVIRK 481
+ D E L+K AATS+ K LLA +AV+AV +V VDL +IK +K
Sbjct: 1 VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKK 60
Query: 482 LGGTVEDTELVDGLVFTQKSANVNGPKRVEKAKIGLI 518
G VE++ELV + + +++ + L
Sbjct: 61 AGEGVEESELVKAVTILIRG---GTEHVIDEVERALE 94
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 74.6 bits (183), Expect = 7e-17
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 427 DRENLIKSAATSLNSKVVSQQASLLAPIAVDAVLKVVNPQRD-TNVDLKDIKVIRKLGGT 485
D L K A T+L+ K LA + V AV V + T VD +IKV +K GG+
Sbjct: 2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGS 61
Query: 486 VEDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQFCISPPKTDMDHK 532
V DT+ + + + V + + L T D K
Sbjct: 62 VNDTQFISAVSILIRG---GTDHVVSEVERALNDAIRVVAITKEDGK 105
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 65.9 bits (160), Expect = 2e-12
Identities = 24/106 (22%), Positives = 41/106 (38%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMN 75
A KD D + +ADA++ +LGP+G + ++ S G TIT DG ++ +++
Sbjct: 1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 60
Query: 76 VIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 121
+ M V A D + I + V
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAV 106
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 65.6 bits (159), Expect = 2e-12
Identities = 23/106 (21%), Positives = 43/106 (40%)
Query: 16 AFKDKSKATDIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMN 75
A K+ +D R+ + +ADA++ +LGP+G + +I S G IT DG ++ K++
Sbjct: 1 AAKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIE 60
Query: 76 VIHPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNV 121
+ M V D + +++ V
Sbjct: 61 LSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAV 106
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 57.2 bits (137), Expect = 1e-09
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 25 DIRNSNIGAAKAVADAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMNVIHPAAKMM 84
R + AVA+A++ +LGPRG + +++ G TIT DG T+ K++ + +
Sbjct: 9 AARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIG 68
Query: 85 DHKVVVSDYSAMD 97
+ D
Sbjct: 69 AQLLKEVASKTND 81
Score = 49.5 bits (117), Expect = 5e-07
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 222 DEAARSLHDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQAL 281
+++ A+ ++ L ++ GGG + + + + G +A + +AL
Sbjct: 116 RGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRAL 175
Query: 282 EVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSA 341
E +AENAG +V + G N G +++E +V P V+ SA
Sbjct: 176 EEPARQIAENAGYEG--SVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSA 233
Query: 342 ITLSTETVRSILKIDDILVEL 362
+ + IL + ++ E
Sbjct: 234 LQNAASIGALILTTEAVVAEK 254
Score = 48.8 bits (115), Expect = 1e-06
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 739 KYADTVSGIDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRK 798
+ + G +A + +ALE +AENAG +V + G N
Sbjct: 155 ELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEG--SVIVQQILAETKNPRYGFNAAT 212
Query: 799 GAITNILEENVVQPLLVSTSAITLSTETVRSILKIDDIV 837
G +++E +V P V+ SA+ + IL + +V
Sbjct: 213 GEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVV 251
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 49.8 bits (118), Expect = 2e-07
Identities = 19/91 (20%), Positives = 39/91 (42%)
Query: 357 DILVELSKAQDIEAGDGTTSVVIVAGSLLEAAEKLLHKGIHPTTISDAFQKAAAKCVEIL 416
+++ E++K D AGDGTT+ ++A +L+ + + G +P + +KA K E L
Sbjct: 9 ELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETL 68
Query: 417 TEMSTPITLADRENLIKSAATSLNSKVVSQQ 447
+ + + L + +
Sbjct: 69 LKGAKIVAGGGVTLLQAAPTLDELKLEGDEA 99
Score = 44.0 bits (103), Expect = 2e-05
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Query: 229 HDALCVVRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVIPLTL 288
V L+K ++AGGG ++ + L + +A ALE +
Sbjct: 59 KAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEG--DEATGANIVKVALEAPLKQI 116
Query: 289 AENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILEENVVQPLLVSTSAITLSTET 348
A N+GL P ++RN G+N + G ++L V P+ V+ SA+ +
Sbjct: 117 AFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASI 172
Query: 349 VRSIL 353
L
Sbjct: 173 AGLFL 177
Score = 42.9 bits (100), Expect = 4e-05
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 747 IDAYCFRAFAQALEVIPLTLAENAGLNPISTVTELRNRHAQGETTTGINVRKGAITNILE 806
+A ALE +A N+GL P ++RN G+N + G ++L
Sbjct: 97 DEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLA 152
Query: 807 ENVVQPLLVSTSAITLSTETVRSIL 831
V P+ V+ SA+ + L
Sbjct: 153 AGVADPVKVTRSALQNAASIAGLFL 177
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase
2A regulatory subunit B56-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 343
Score = 27.5 bits (61), Expect = 7.0
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 78 HPAAKMMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVLLVQKSILRDAISDLA 137
+ A K +D K V+ D ER ++ + +I L ++ +R I+++
Sbjct: 124 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGK----FLGLRAYIRKQINNIF 179
Query: 138 IHFLDKI 144
F+ +
Sbjct: 180 YRFIYET 186
>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
(Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 249
Score = 26.9 bits (59), Expect = 8.9
Identities = 20/170 (11%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 125 QKSILRDAISDLAIHFL-DKIKVLVVKDIEREDIEFVCKTLNTRPIASLDHFLPEHLSSA 183
+ + D I + L + D E++D+ + R + +P +
Sbjct: 65 RVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIP 124
Query: 184 DLVEEIPAGNSRFVKISGIQNPGRTLTVVVRGSNKLVLDEAARSLHDA---------LCV 234
++ + + + +++ + P L + + +K + + + ++ L
Sbjct: 125 EVSDMVVKAITDIIEMDSKRVPRDKLACITK-CSKHIFNAIKITKNEPASADDFLPTLIY 183
Query: 235 VRCLVKQRALIAGGGAPEIELSLKLTKYADTVSGIDAYCFRAFAQALEVI 284
+ L + I+ + + ++G D Y F A+ I
Sbjct: 184 IVLKGNPPRLQS-----NIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFI 228
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga
(Porphyridium purpureum) [TaxId: 35688]}
Length = 239
Score = 27.0 bits (59), Expect = 9.8
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 10/132 (7%)
Query: 463 VNPQRDTNVDLKDIKVIRKLGGTV--EDTELVDGLVFTQKSANVNGPKRVEKAKIGLIQF 520
V + N+ ++ V R + D + L + + V G
Sbjct: 83 VPANQIINLPAGEVFVHRNIANQCIHSDMSFLSVLQYAVQYLKVKRVVVCGHYACGGCAA 142
Query: 521 CISPPKTDMDHKVVVSDYSAMDRVLKEERAYILNIVKQIKKAGCNVL-----LVQKSILR 575
+ + + + E + NVL + SI++
Sbjct: 143 ALGDSRLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQ 202
Query: 576 DAIS---DLAIH 584
DA +L +
Sbjct: 203 DAWDAGQELEVQ 214
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.360
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,874,941
Number of extensions: 137421
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 35
Length of query: 841
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 748
Effective length of database: 1,130,706
Effective search space: 845768088
Effective search space used: 845768088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)