BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8875
(734 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 250/668 (37%), Positives = 358/668 (53%), Gaps = 69/668 (10%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
F+C G CI WVCDG +C DG DE + C C +F+C C+P W CD
Sbjct: 29 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 88
Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
DC +GSDE+ C +TC EFRC + +CI + CD + DC D SDE V C
Sbjct: 89 QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE---ASCPVLTC 145
Query: 178 AAVNGHC-SHLCLPAPQINAHSPKISCACPEGLKLLPDL---LMCAEAGSKPCRNSTMFR 233
+ C S C+P + P C +G P L + S PC ++ F
Sbjct: 146 GPASFQCNSSTCIPQLWACDNDPD----CEDGSDEWPQRCRGLYVFQGDSSPC-SAFEFH 200
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLXXXXXXXXX 292
C G CI S+W CDG DC D DE+ C TCR DEF C++GNCI
Sbjct: 201 CLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIH---------GSRQ 251
Query: 293 XXXXXXCQPVKCTAGQFTCQNLTACI-PDKWVC-DGDTVEKDSTCPNATPMNSSVRIEGA 350
C+ + G C N+T C P+K+ C G+ + D
Sbjct: 252 CDREYDCKDMSDEVG---CVNVTLCEGPNKFKCHSGECITLDK----------------- 291
Query: 351 VAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGY 410
VC+ DC DE +CG +EC +NGGC H C DL +GY
Sbjct: 292 ------------------VCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 333
Query: 411 MCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470
C C +G++L + R C DIDEC+ P +CSQ+C+N +GG+KC+C G+ DPH CKA
Sbjct: 334 ECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKA 391
Query: 471 AEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKA 530
A L F +H++RK++LD E T+++ + ++ A+D + I+WSD+S++ I
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 451
Query: 531 PIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS 587
+D S VI D DGLAVDWI+S+IYWTD+ T+ +A+ +G RK L R
Sbjct: 452 QLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 511
Query: 588 YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647
+PR++ ++P+ G+MYW+DWG AKI++ G++G ++ +I+WPNG+TLDL+ R
Sbjct: 512 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 571
Query: 648 LYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKF 707
LYWVD+KL+ ISS D NGGNR+ +L + L+HPFS++ FED ++W+D +AI+ AN+
Sbjct: 572 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 631
Query: 708 TGDNLTAI 715
TG ++ +
Sbjct: 632 TGSDVNLL 639
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC---AEAGSKPC 226
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C AEA
Sbjct: 660 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQ 719
Query: 227 RNSTM 231
ST+
Sbjct: 720 ETSTV 724
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 20/138 (14%)
Query: 263 ETCRSDEFTCANGNCIQRIWL--XXXXXXXXXXXXXXXCQPVKCTAGQFTCQN-LTACIP 319
+ C +EF C +G CI W+ C V C +G F+C + CIP
Sbjct: 22 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 81
Query: 320 DKWVCDG----DTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPD 375
W CDG D + CP T R I R VCD D
Sbjct: 82 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKC-----------ISRQFVCDSDRD 130
Query: 376 CPLMQDEDPTKCGVDECA 393
C + D C V C
Sbjct: 131 C--LDGSDEASCPVLTCG 146
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/668 (37%), Positives = 355/668 (53%), Gaps = 67/668 (10%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
F+C G CI WVCDG +C DG DE + C C +F+C C+P W CD
Sbjct: 11 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 70
Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
DC +GSDE+ C +TC EFRC + +CI + CD + DC D SDE V C
Sbjct: 71 QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE---ASCPVLTC 127
Query: 178 AAVNGHC-SHLCLPAPQINAHSPKISCACPEGLKLLPDL---LMCAEAGSKPCRNSTMFR 233
+ C S C+P + P C +G P L + S PC ++ F
Sbjct: 128 GPASFQCNSSTCIPQLWACDNDPD----CEDGSDEWPQRCRGLYVFQGDSSPC-SAFEFH 182
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLXXXXXXXXX 292
C G CI S+W CDG DC D DE+ C TCR DEF C++GNCI
Sbjct: 183 CLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIH---------GSRQ 233
Query: 293 XXXXXXCQPVKCTAGQFTCQNLTACI-PDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAV 351
C+ + G C N+T C P+K+ C
Sbjct: 234 CDREYDCKDMSDEVG---CVNVTLCEGPNKFKCHSGEC---------------------- 268
Query: 352 AFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYM 411
I VC+ DC DE +CG +EC +NGGC H C DL +GY
Sbjct: 269 ------------ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 316
Query: 412 CECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA 471
C C +G++L + R C DIDEC+ P +CSQ+C+N +GG+KC+C G+ DPH CKA
Sbjct: 317 CLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAV 374
Query: 472 EGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAP 531
A L F +H++RK++LD E T+++ + ++ A+D + I+WSD+S++ I
Sbjct: 375 GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 434
Query: 532 IDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY 588
+D S VI D DGLAVDWI+S+IYWTD+ T+ +A+ +G RK L R
Sbjct: 435 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ 494
Query: 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648
+PR++ ++P+ G+MYW+DWG AKI++ G++G ++ +I+WPNG+TLDL+ RL
Sbjct: 495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554
Query: 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT 708
YWVD+KL+ ISS D NGGNR+ +L + L+HPFS++ FED ++W+D +AI+ AN+ T
Sbjct: 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614
Query: 709 GDNLTAIT 716
G ++ +
Sbjct: 615 GSDVNLLA 622
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 642 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 690
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 20/138 (14%)
Query: 263 ETCRSDEFTCANGNCIQRIWL--XXXXXXXXXXXXXXXCQPVKCTAGQFTCQN-LTACIP 319
+ C +EF C +G CI W+ C V C +G F+C + CIP
Sbjct: 4 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 320 DKWVCDG----DTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPD 375
W CDG D + CP T R I R VCD D
Sbjct: 64 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKC-----------ISRQFVCDSDRD 112
Query: 376 CPLMQDEDPTKCGVDECA 393
C + D C V C
Sbjct: 113 C--LDGSDEASCPVLTCG 128
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 229/355 (64%), Gaps = 5/355 (1%)
Query: 364 IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSN 423
I VC+ DC DE +CG +EC +NGGC H C DL +GY C C +G++L +
Sbjct: 15 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 74
Query: 424 RHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKH 483
R C DIDEC+ P +CSQ+C+N +GG+KC+C G+ DPH CKA A L F +H
Sbjct: 75 RR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH-TKACKAVGSIAYLFFTNRH 132
Query: 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---SERTV 540
++RK++LD E T+++ + ++ A+D + I+WSD+S++ I +D S
Sbjct: 133 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 192
Query: 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600
VI D DGLAVDWI+S+IYWTD+ T+ +A+ +G RK L R +PR++ ++P+
Sbjct: 193 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 252
Query: 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660
G+MYW+DWG AKI++ G++G ++ +I+WPNG+TLDL+ RLYWVD+KL+ ISS
Sbjct: 253 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 661 CDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715
D NGGNR+ +L + L+HPFS++ FED ++W+D +AI+ AN+ TG ++ +
Sbjct: 313 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 367
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 388 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 436
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 33/141 (23%)
Query: 95 GQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQ---------ASEFRCG 143
G +F C S GEC+ L +C+ DC D SDE K C C ++ + G
Sbjct: 3 GPNKFKCHS--GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG 60
Query: 144 NNRCIPNHWQCDGEFDCSDKSD-EDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKIS 202
P+ +Q + C D + +DP+ C+ + C + G
Sbjct: 61 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQL--CVNLEG-----------------GYK 101
Query: 203 CACPEGLKLLPDLLMCAEAGS 223
C C EG +L P C GS
Sbjct: 102 CQCEEGFQLDPHTKACKAVGS 122
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 311 bits (797), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 218/329 (66%), Gaps = 5/329 (1%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG 449
+EC +NGGC H C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +GG
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEGG 59
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509
+KC+C G+ DPH CKA A L F +H++RK++LD E T+++ + ++ A+D
Sbjct: 60 YKCQCEEGFQLDPH-TKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 510 FVFRTGMIFWSDISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
+ I+WSD+S++ I +D S VI D DGLAVDWI+S+IYWTD+
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
T+ +A+ +G RK L R +PR++ ++P+ G+MYW+DWG AKI++ G++G
Sbjct: 179 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238
Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
++ +I+WPNG+TLDL+ RLYWVD+KL+ ISS D NGGNR+ +L + L+HPFS++
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298
Query: 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715
FED ++W+D +AI+ AN+ TG ++ +
Sbjct: 299 FEDKVFWTDIINEAIFSANRLTGSDVNLL 327
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 348 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 285 bits (730), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 211/339 (62%), Gaps = 6/339 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
G + C +NGGC KC + C C+ GY+L+ + TC D++EC G CSQ C N +
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 448 GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATA 507
G F+C C AGY P + CKA LLFA + DIR++ E T ++N+ ++A A
Sbjct: 62 GAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH 567
+DF R ++FWSD++ +I +A ++ GS V+ GLAVDW++ +YWTD+
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG 179
Query: 568 KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627
+ IE+AN +G RKVL+ L++PR++AL+P++G +YW+DWG +IE + MDGS R +
Sbjct: 180 TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239
Query: 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687
+ + + WPNGLT+D RR+YWVDAK + I + +G +R+ V+ Q L HPF+I+ F
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI--SQGLPHPFAITVF 297
Query: 688 EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN 726
ED LYW+DW K+I ANKFTG N I ++ H P++
Sbjct: 298 EDSLYWTDWHTKSINSANKFTGKNQEIIR--NKLHFPMD 334
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLK 210
G N C NG C+HLCLP+ Q +CACP G +
Sbjct: 346 GKNRCGDNNGGCTHLCLPSGQ------NYTCACPTGFR 377
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
G + C +NGGC H C+ Y C C G++ N H C
Sbjct: 346 GKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHAC 384
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 166 EDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKP 225
ED C VN CA G+CS C + C C G +L PD C G +P
Sbjct: 36 EDGRTCQDVNECAE-EGYCSQGCTNS------EGAFQCWCEAGYELRPDRRSCKALGPEP 88
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 188/297 (63%), Gaps = 6/297 (2%)
Query: 430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKIS 489
++EC G CSQ C N +G F+C C AGY P + CKA LLFA + DIR++
Sbjct: 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVL 59
Query: 490 LDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549
E T ++N+ ++A A+DF R ++FWSD++ +I +A ++ GS V+
Sbjct: 60 PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESP 118
Query: 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW 609
GLAVDW++ +YWTD+ + IE+AN +G RKVL+ L++PR++AL+P++G +YW+DW
Sbjct: 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178
Query: 610 GQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669
G +IE + MDGS R ++ + + WPNGLT+D RR+YWVDAK + I + +G +R+
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN 726
V+ Q L HPF+I+ FED LYW+DW K+I ANKFTG N I ++ H P++
Sbjct: 239 AVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR--NKLHFPMD 291
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLK 210
G N C NG C+HLCLP+ Q +CACP G +
Sbjct: 303 GKNRCGDNNGGCTHLCLPSGQ------NYTCACPTGFR 334
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 387 CGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
G + C +NGGC H C+ Y C C G++ N H C
Sbjct: 302 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHAC 341
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
LL+A + D+R + + T +V + A A+DFVF G+I+WSD+SE+ I + ++
Sbjct: 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
V+ DGLA DW+ +YWTD+ N IE++N +G++RKVL LD+PR+
Sbjct: 67 TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 126
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
+AL+P G+MYW+DWG+ KIERAGMDGS R ++I S+I WPNGLTLD +++LYW DAK
Sbjct: 127 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
LN I + +G NR+ V+ +L HPF+++ FED LYW+DW +I NK+TG+
Sbjct: 187 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 240
Query: 715 ITGVHQTHEPLNSP 728
G+ + H + SP
Sbjct: 241 --GLREIHSDIFSP 252
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGS 223
N N C NG CSHLCL +P P CACP G+KLL + C + S
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPV----KPFYQCACPTGVKLLENGKTCKDGNS 312
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 392 CAKDNGGCLHKCVDLPVG--YMCECNEGYKLSSNRHTCID 429
C DNGGC H C+ PV Y C C G KL N TC D
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
LL+A + D+R + + T +V + A A+DFVF G+I+WSD+SE+ I + ++
Sbjct: 4 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 63
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
V+ DGLA DW+ +YWTD+ N IE++N +G++RKVL LD+PR+
Sbjct: 64 TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
+AL+P G+MYW+DWG+ KIERAGMDGS R ++I S+I WPNGLTLD +++LYW DAK
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
LN I + +G NR+ V+ +L HPF+++ FED LYW+DW +I NK+TG+
Sbjct: 184 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 237
Query: 715 ITGVHQTHEPLNSP 728
G+ + H + SP
Sbjct: 238 --GLREIHSDIFSP 249
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSK 224
N N C NG CSHLCL +P P CACP G+KLL + C + ++
Sbjct: 262 NATNPCGIDNGGCSHLCLMSPV----KPFYQCACPTGVKLLENGKTCKDGATE 310
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 392 CAKDNGGCLHKCVDLPVG--YMCECNEGYKLSSNRHTCID 429
C DNGGC H C+ PV Y C C G KL N TC D
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 306
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
LL+A + D+R + + T +V + A A+DFVF G+I+WSD+SE+ I + ++
Sbjct: 4 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 63
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
V+ DGLA DW+ +YWTD+ N IE++N +G++RKVL LD+PR+
Sbjct: 64 TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
+AL+P G+MYW+DWG+ KIERAGMDGS R ++I S+I WPNGLTLD +++LYW DAK
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
LN I + +G NR+ V+ +L HPF+++ FED LYW+DW +I NK+TG+
Sbjct: 184 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 237
Query: 715 ITGVHQTHEPLNSP 728
G+ + H + SP
Sbjct: 238 --GLREIHSDIFSP 249
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 178/342 (52%), Gaps = 56/342 (16%)
Query: 392 CAKDNGGCLHKCVDLPVG--YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG 449
C DNGGC H C+ PV Y C C G KL N TC D
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD-------------------- 306
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIV---NSTKSAT 506
A E LL AR+ D+R+ISLD + T IV + A
Sbjct: 307 -------------------GATE---LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAI 344
Query: 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
AID+ G I+W+D + I ++ ID GS V+ DG+AVDW+ ++YWTD
Sbjct: 345 AIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT 403
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
+ IE+ GTMRK+L+ L+EPR++ L+P+ G+MYW+DWG+ KIERA +DGS R
Sbjct: 404 GTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV 463
Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
+++ + + WPNGL LD + ++YW DAK ++I + +G RR+++ + H F +
Sbjct: 464 VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV--EDKIPHIFGFTL 521
Query: 687 FEDWLYWSDWQQKAIYKANKFTG------DNLTAITGVHQTH 722
D++YW+DWQ+++I + +K + D L + G+ T+
Sbjct: 522 LGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 563
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 366 RTAVCDKHPDCPLMQDEDPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNR 424
R + D+ PD ++ + + G + CA++NGGC H C+ P G C C G++L S+
Sbjct: 546 REVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDM 605
Query: 425 HTCI 428
TCI
Sbjct: 606 KTCI 609
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
G N CA NG CSHLCL PQ + CACP G +L+ D+ C
Sbjct: 569 GSNPCAEENGGCSHLCLYRPQ------GLRCACPIGFELISDMKTC 608
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSK 224
N N C NG CSHLCL +P P CACP G+KLL + C + ++
Sbjct: 262 NATNPCGIDNGGCSHLCLMSPV----KPFYQCACPTGVKLLENGKTCKDGATE 310
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 421 SSNRHTCIDIDEC-ETPGSCSQICLNEKGGFKCECVAGY 458
++N H I + C E G CS +CL G +C C G+
Sbjct: 561 ATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGF 599
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
LL+A + D+R + + T +V + A A+DFVF G+I+WSD+SE+ I + ++
Sbjct: 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 71
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
V+ DGLA DW+ +YWTD+ N IE++N +G++RKVL LD+PR+
Sbjct: 72 TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 131
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
+AL+P G+MYW+DWG+ KIERAGMDGS R ++I S+I WPNGLTLD +++LYW DAK
Sbjct: 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 191
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
LN I + +G NR+ V+ +L HPF+++ FED LYW+DW +I NK+TG+
Sbjct: 192 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 245
Query: 715 ITGVHQTHEPLNSP 728
G+ + H + SP
Sbjct: 246 --GLREIHSDIFSP 257
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 178/342 (52%), Gaps = 56/342 (16%)
Query: 392 CAKDNGGCLHKCVDLPVG--YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG 449
C DNGGC H C+ PV Y C C G KL N TC D
Sbjct: 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD-------------------- 314
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIV---NSTKSAT 506
A E LL AR+ D+R+ISLD + T IV + A
Sbjct: 315 -------------------GATE---LLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAI 352
Query: 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
AID+ G I+W+D + I ++ ID GS V+ DG+AVDW+ ++YWTD
Sbjct: 353 AIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT 411
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
+ IE+ GTMRK+L+ L+EPR++ L+P+ G+MYW+DWG+ KIERA +DGS R
Sbjct: 412 GTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV 471
Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
+++ + + WPNGL LD + ++YW DAK ++I + +G RR+++ + H F +
Sbjct: 472 VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV--EDKIPHIFGFTL 529
Query: 687 FEDWLYWSDWQQKAIYKANKFTG------DNLTAITGVHQTH 722
D++YW+DWQ+++I + +K + D L + G+ T+
Sbjct: 530 LGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 571
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 366 RTAVCDKHPDCPLMQDEDPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNR 424
R + D+ PD ++ + + G + CA++NGGC H C+ P G C C G++L S+
Sbjct: 554 REVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDM 613
Query: 425 HTCI 428
TCI
Sbjct: 614 KTCI 617
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
G N CA NG CSHLCL PQ + CACP G +L+ D+ C
Sbjct: 577 GSNPCAEENGGCSHLCLYRPQ------GLRCACPIGFELISDMKTC 616
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSK 224
N N C NG CSHLCL +P P CACP G+KLL + C + ++
Sbjct: 270 NATNPCGIDNGGCSHLCLMSPV----KPFYQCACPTGVKLLENGKTCKDGATE 318
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 421 SSNRHTCIDIDEC-ETPGSCSQICLNEKGGFKCECVAGY 458
++N H I + C E G CS +CL G +C C G+
Sbjct: 569 ATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGF 607
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 162/244 (66%), Gaps = 3/244 (1%)
Query: 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
A L F +H++RK++LD E T+++ + ++ A+D + I+WSD+S++ I +D
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 535 G---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
S VI D DGLAVDWI+S+IYWTD+ T+ +A+ +G RK L R +
Sbjct: 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
PR++ ++P+ G+MYW+DWG AKI++ G++G ++ +I+WPNG+TLDL+ RLYWV
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
D+KL+ ISS D NGGNR+ +L + L+HPFS++ FED ++W+D +AI+ AN+ TG +
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241
Query: 712 LTAI 715
+ +
Sbjct: 242 VNLL 245
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 157/249 (63%), Gaps = 7/249 (2%)
Query: 471 AEGHASLLFARKHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIY 528
A+ A LLF+R+ DIR+ISL+ ++ + + K A+A+DF I+W+DIS K I
Sbjct: 1 ADPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 60
Query: 529 KAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY 588
+A ++ GS V+E +G+AVDW+ ++YW D N IE++ +G R+VLV
Sbjct: 61 RAFMN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD 119
Query: 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648
LD PR+LAL+P +G+MYW++WG KI+RA MDGS R +V ++ NGLT+D +RRL
Sbjct: 120 LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRL 178
Query: 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT 708
YW D N I S + G NR ++ L HPF ++ ++D++YW+DW +++I +ANK +
Sbjct: 179 YWTDLDTNLIESSNMLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS 235
Query: 709 GDNLTAITG 717
G N T I G
Sbjct: 236 GQNRTIIQG 244
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 55/328 (16%)
Query: 386 KCGVDECAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICL 444
+ G +ECA NG C H C+ +PV G++C C Y L+++ TC
Sbjct: 260 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC----------------- 302
Query: 445 NEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---VNS 501
PT LLF++K I ++ +D + I ++S
Sbjct: 303 ------------------SAPTTF--------LLFSQKSAINRMVIDEQQSPDIILPIHS 336
Query: 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDW 556
++ AID+ ++W D + I KA D TVV+ + + L++D
Sbjct: 337 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 396
Query: 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KI 615
+IYWT N I + +G V+++ D PR++ +NP G+MY+++ + + KI
Sbjct: 397 YSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERSPKI 456
Query: 616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP 675
ERA +DG+ R ++ S + P L LD +L+W D+ L I S D +G NR ++
Sbjct: 457 ERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR--IVLED 514
Query: 676 QTLSHPFSISTFEDWLYWSDWQQKAIYK 703
+ P ++ FE+WLYW D QQ+ I K
Sbjct: 515 SNILQPVGLTVFENWLYWIDKQQQMIEK 542
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 57/266 (21%)
Query: 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV 541
K I + ++D E T +V + A + + ++W+D+ I + + G R V+
Sbjct: 143 KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM-LGLNREVI 201
Query: 542 IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD---------EP 592
++ + + +IYWTD + +IE AN + +++ +LD
Sbjct: 202 ADD---LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS 258
Query: 593 RSLALN----------------PIDGWM--------------------YWSDWGQNAKIE 616
R N P+ G++ + + Q + I
Sbjct: 259 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAIN 318
Query: 617 RAGMDGSHRNMVI--VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS 674
R +D +I + ++ + D + ++LYW+D++ N I +G V+ S
Sbjct: 319 RMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS 378
Query: 675 ---PQTLS---HPFSISTFEDWLYWS 694
Q L + SI + ++YW+
Sbjct: 379 SVPSQNLEIQPYDLSIDIYSRYIYWT 404
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCA 219
+G N CA+ NGHCSHLCL P C CP L D C+
Sbjct: 261 SGWNECASSNGHCSHLCLAVP-----VGGFVCGCPAHYSLNADNRTCS 303
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 478 LFARKHDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISEKKIYKAPIDEGS 536
L R I + +LD E + S S A+ R G +FW+D ++I + + G+
Sbjct: 449 LQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL-SGA 507
Query: 537 ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL 589
R V+ ED I + + + +YW D + IE + G + V++ +
Sbjct: 508 NRIVL--EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARI 558
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
CA NG CSH+CL C+CP L LL D L C E
Sbjct: 580 CAQDNGGCSHICLV-----KGDGTTRCSCPMHLVLLQDELSCGE 618
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 155/246 (63%), Gaps = 7/246 (2%)
Query: 474 HASLLFARKHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAP 531
A LLF+R+ DIR+ISL+ ++ + + K A+A+DF I+W+DIS K I +A
Sbjct: 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 532 IDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
++ GS V+E +G+AVDW+ ++YW D N IE++ +G R+VLV LD
Sbjct: 66 MN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 124
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
PR+LAL+P +G+MYW++WG KI+RA MDGS R +V ++ NGLT+D +RRLYW
Sbjct: 125 PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWT 183
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
D N I S + G NR ++ L HPF ++ ++D++YW+DW +++I +ANK +G N
Sbjct: 184 DLDTNLIESSNMLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240
Query: 712 LTAITG 717
T I G
Sbjct: 241 RTIIQG 246
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 55/328 (16%)
Query: 386 KCGVDECAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICL 444
+ G +ECA NG C H C+ +PV G++C C Y L+++ TC
Sbjct: 262 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC----------------- 304
Query: 445 NEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---VNS 501
PT LLF++K I ++ +D + I ++S
Sbjct: 305 ------------------SAPTTF--------LLFSQKSAINRMVIDEQQSPDIILPIHS 338
Query: 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDW 556
++ AID+ ++W D + I KA D TVV+ + + L++D
Sbjct: 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 398
Query: 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KI 615
+IYWT N I + +G V+++ D PR++ +NP G+MY+++ + + KI
Sbjct: 399 YSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKI 458
Query: 616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP 675
ERA +DG+ R ++ S + P L LD +L+W D+ L I S D +G NR ++
Sbjct: 459 ERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR--IVLED 516
Query: 676 QTLSHPFSISTFEDWLYWSDWQQKAIYK 703
+ P ++ FE+WLYW D QQ+ I K
Sbjct: 517 SNILQPVGLTVFENWLYWIDKQQQMIEK 544
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 57/266 (21%)
Query: 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV 541
K I + ++D E T +V + A + + ++W+D+ I + + G R V+
Sbjct: 145 KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM-LGLNREVI 203
Query: 542 IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD---------EP 592
++ + + +IYWTD + +IE AN + +++ +LD
Sbjct: 204 ADD---LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS 260
Query: 593 RSLALN----------------PIDGWM--------------------YWSDWGQNAKIE 616
R N P+ G++ + + Q + I
Sbjct: 261 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAIN 320
Query: 617 RAGMDGSHRNMVI--VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS 674
R +D +I + ++ + D + ++LYW+D++ N I +G V+ S
Sbjct: 321 RMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS 380
Query: 675 ---PQTLS---HPFSISTFEDWLYWS 694
Q L + SI + ++YW+
Sbjct: 381 SVPSQNLEIQPYDLSIDIYSRYIYWT 406
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCA 219
+G N CA+ NGHCSHLCL P C CP L D C+
Sbjct: 263 SGWNECASSNGHCSHLCLAVP-----VGGFVCGCPAHYSLNADNRTCS 305
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 478 LFARKHDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISEKKIYKAPIDEGS 536
L R I + +LD E + S S A+ R G +FW+D ++I + + G+
Sbjct: 451 LQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL-SGA 509
Query: 537 ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
R V+ ED I + + + +YW D + IE + G + V++ + +
Sbjct: 510 NRIVL--EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 562
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCA 219
CA NG CSH+CL C+CP L LL D L C
Sbjct: 582 CAQDNGGCSHICLVKG-----DGTTRCSCPMHLVLLQDELSCG 619
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 155/246 (63%), Gaps = 7/246 (2%)
Query: 474 HASLLFARKHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAP 531
A LLF+R+ DIR+ISL+ ++ + + K A+A+DF I+W+DIS K I +A
Sbjct: 11 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 70
Query: 532 IDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
++ GS V+E +G+AVDW+ ++YW D N IE++ +G R+VLV LD
Sbjct: 71 MN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 129
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
PR+LAL+P +G+MYW++WG KI+RA MDGS R +V ++ NGLT+D +RRLYW
Sbjct: 130 PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWT 188
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
D N I S + G NR ++ L HPF ++ ++D++YW+DW +++I +ANK +G N
Sbjct: 189 DLDTNLIESSNMLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 245
Query: 712 LTAITG 717
T I G
Sbjct: 246 RTIIQG 251
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 55/328 (16%)
Query: 386 KCGVDECAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICL 444
+ G +ECA NG C H C+ +PV G++C C Y L+++ TC
Sbjct: 267 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC----------------- 309
Query: 445 NEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---VNS 501
PT LLF++K I ++ +D + I ++S
Sbjct: 310 ------------------SAPTTF--------LLFSQKSAINRMVIDEQQSPDIILPIHS 343
Query: 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDW 556
++ AID+ ++W D + I KA D TVV+ + + L++D
Sbjct: 344 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 403
Query: 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KI 615
+IYWT N I + +G V+++ D PR++ +NP G+MY+++ + + KI
Sbjct: 404 YSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERSPKI 463
Query: 616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP 675
ERA +DG+ R ++ S + P L LD +L+W D+ L I S D +G NR ++
Sbjct: 464 ERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR--IVLED 521
Query: 676 QTLSHPFSISTFEDWLYWSDWQQKAIYK 703
+ P ++ FE+WLYW D QQ+ I K
Sbjct: 522 SNILQPVGLTVFENWLYWIDKQQQMIEK 549
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 57/266 (21%)
Query: 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV 541
K I + ++D E T +V + A + + ++W+D+ I + + G R V+
Sbjct: 150 KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM-LGLNREVI 208
Query: 542 IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD---------EP 592
++ + + +IYWTD + +IE AN + +++ +LD
Sbjct: 209 ADD---LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS 265
Query: 593 RSLALN----------------PIDGWM--------------------YWSDWGQNAKIE 616
R N P+ G++ + + Q + I
Sbjct: 266 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAIN 325
Query: 617 RAGMDGSHRNMVI--VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS 674
R +D +I + ++ + D + ++LYW+D++ N I +G V+ S
Sbjct: 326 RMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS 385
Query: 675 ---PQTLS---HPFSISTFEDWLYWS 694
Q L + SI + ++YW+
Sbjct: 386 SVPSQNLEIQPYDLSIDIYSRYIYWT 411
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCA 219
+G N CA+ NGHCSHLCL P C CP L D C+
Sbjct: 268 SGWNECASSNGHCSHLCLAVP-----VGGFVCGCPAHYSLNADNRTCS 310
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 478 LFARKHDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISEKKIYKAPIDEGS 536
L R I + +LD E + S S A+ R G +FW+D ++I + + G+
Sbjct: 456 LQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL-SGA 514
Query: 537 ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
R V+ ED I + + + +YW D + IE + G + V++ + +
Sbjct: 515 NRIVL--EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 567
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
CA NG CSH+CL C+CP L LL D L C
Sbjct: 587 CAQDNGGCSHICLV-----KGDGTTRCSCPMHLVLLQDELSC 623
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 131/232 (56%), Gaps = 11/232 (4%)
Query: 477 LLFARKHDIRKISLDHHEMT-----AIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKA 530
LLFA+ I ++ L+ + M A ++ K + F +++W+DISE I +A
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
+ G E T +I +D +G+A+D + I+WTD+ + IE+A +GT R+VL + L
Sbjct: 64 SL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 591 EPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY 649
PR + +P+ G +YW+DW + N KIE + MDG++R ++ ++ PNGLT D +L
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182
Query: 650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAI 701
WVDA + + RR VL + L +PF+++++ LY++DW+ ++
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGKNLYYTDWKTNSV 231
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
G +EC +NGGC H C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +
Sbjct: 28 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 86
Query: 448 GGFKCECVAGYIKDPH 463
GG+KC+C G+ DPH
Sbjct: 87 GGYKCQCEEGFQLDPH 102
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC +D C CV+L GY C+C EG++L + C
Sbjct: 69 IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
G +EC +NGGC H C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +
Sbjct: 4 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 62
Query: 448 GGFKCECVAGYIKDPH 463
GG+KC+C G+ DPH
Sbjct: 63 GGYKCQCEEGFQLDPH 78
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC +D C CV+L GY C+C EG++L + C
Sbjct: 45 IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
G +EC +NGGC + C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +
Sbjct: 28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 86
Query: 448 GGFKCECVAGYIKDPH 463
GG+KC+C G+ DPH
Sbjct: 87 GGYKCQCEEGFQLDPH 102
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC +D C CV+L GY C+C EG++L + C
Sbjct: 69 IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
+EC +NGGC H C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +G
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEG 60
Query: 449 GFKCECVAGYIKDPHHPTQCKAA 471
G+KC+C G+ DPH CKA
Sbjct: 61 GYKCQCEEGFQLDPHTKA-CKAV 82
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
G +EC +NGGC + C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +
Sbjct: 4 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 62
Query: 448 GGFKCECVAGYIKDPH 463
GG+KC+C G+ DPH
Sbjct: 63 GGYKCQCEEGFQLDPH 78
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC +D C CV+L GY C+C EG++L + C
Sbjct: 45 IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
+EC +NGGC H C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +G
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEG 60
Query: 449 GFKCECVAGYIKDPH 463
G+KC+C G+ DPH
Sbjct: 61 GYKCQCEEGFQLDPH 75
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC +D C CV+L GY C+C EG++L + C
Sbjct: 42 IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNH 151
+ C Q EF C G+C+ ++CD + DC DGSDE SC TC + F+C ++ CIP
Sbjct: 1 KTCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL 58
Query: 152 WQCDGEFDCSDKSDEDPEMCNG 173
W CD + DC D SDE P+ C G
Sbjct: 59 WACDNDPDCEDGSDEWPQRCRG 80
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNP 119
FRC G CI +VCD DC DG DE C CG F C SS C+P W CD++P
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS--TCIPQLWACDNDP 65
Query: 120 DCSDGSDE 127
DC DGSDE
Sbjct: 66 DCEDGSDE 73
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE-TCRSDEFTCANGNCIQRIW 282
FRC G CI +VCD DC DG DE C TC F C + CI ++W
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLW 59
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 44/126 (34%), Gaps = 53/126 (42%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAP 192
+TC +EFRC + +CI + CD + DC D SDE
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA------------------------- 35
Query: 193 QINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDC 252
+CP +L C A F+C CIP W CD DC
Sbjct: 36 -----------SCP--------VLTCGPAS---------FQCNSSTCIPQLWACDNDPDC 67
Query: 253 PDGVDE 258
DG DE
Sbjct: 68 EDGSDE 73
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 263 ETCRSDEFTCANGNCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKW 322
+TC EF C +G CI R ++ C + C F C N + CIP W
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQC-NSSTCIPQLW 59
Query: 323 VCDGD 327
CD D
Sbjct: 60 ACDND 64
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 6/77 (7%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCGN--NRCIP 149
C + EF C+ G+C+ W+CD + +C DGSDE ++C + TC++ +F CG NRCIP
Sbjct: 8 CERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 150 NHWQCDGEFDCSDKSDE 166
W+CDG+ DC + SDE
Sbjct: 66 QFWRCDGQVDCDNGSDE 82
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
F+C G CI WVCDG +C DG DE + C C +F+C C+P W CD
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 72
Query: 118 NPDCSDGSDEKSC 130
DC +GSDE+ C
Sbjct: 73 QVDCDNGSDEQGC 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 53/129 (41%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQI 194
C+ +EF+C + +CI W CDG +C D SDE E C
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------------------- 44
Query: 195 NAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGM--CIPSTWVCDGQNDC 252
+S C G F C G + CIP W CDGQ DC
Sbjct: 45 ------LSVTCKSG----------------------DFSCGGRVNRCIPQFWRCDGQVDC 76
Query: 253 PDGVDEKKC 261
+G DE+ C
Sbjct: 77 DNGSDEQGC 85
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK---CHETCRSDEFTCAN--GNCIQRIW 282
F+C G CI WVCDG +C DG DE + TC+S +F+C CI + W
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFW 68
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 263 ETCRSDEFTCANGNCIQRIWL--XXXXXXXXXXXXXXXCQPVKCTAGQFTCQN-LTACIP 319
+ C +EF C +G CI W+ C V C +G F+C + CIP
Sbjct: 6 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 320 DKWVCDG 326
W CDG
Sbjct: 66 QFWRCDG 72
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 303 KCTAGQFTCQNLTACIPDKWVCDGD------TVEKDSTCPNATPMNSSVRIEGAVAFIPP 356
+C +F CQ+ CI KWVCDG + E TC + T + G V P
Sbjct: 7 RCERNEFQCQD-GKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 357 GFAMAMKIVRTAVCDKHPDCPLMQDE 382
F CD DC DE
Sbjct: 66 QFWR---------CDGQVDCDNGSDE 82
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 90 QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK-SCKNRTC-QASEFRCGNNRC 147
R C +F+C S G C+P++W CD + DC D SDE SC TC ++F C N RC
Sbjct: 1 SARTCPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRC 58
Query: 148 IPNHWQCDGEFDCSDKSDE 166
I +W+CD + DC D SDE
Sbjct: 59 ININWRCDNDNDCGDNSDE 77
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 59 MFRCTGGMCIPSTWVCDGQNDCPDGVDEK-KCQKRICGQ-EEFTCRSSPGECVPLTWMCD 116
F C G CIP +W CD +DC D DE C C +FTC + G C+ + W CD
Sbjct: 9 QFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN--GRCININWRCD 66
Query: 117 DNPDCSDGSDEKSCK 131
++ DC D SDE C
Sbjct: 67 NDNDCGDNSDEAGCS 81
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 44/129 (34%), Gaps = 51/129 (39%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAP 192
RTC ++F C + RCIP W CD + DC D+SDE
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE-------------------------- 36
Query: 193 QINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDC 252
SCA P L T F C G CI W CD NDC
Sbjct: 37 -------SASCAYPTCFPL------------------TQFTCNNGRCININWRCDNDNDC 71
Query: 253 PDGVDEKKC 261
D DE C
Sbjct: 72 GDNSDEAGC 80
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CHETCRS-DEFTCANGNCIQRIW 282
F C G CIP +W CD +DC D DE + TC +FTC NG CI W
Sbjct: 9 QFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
T F C G CI W CD NDC D DE C
Sbjct: 49 TQFTCNNGRCININWRCDNDNDCGDNSDEAGCS 81
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCQ--------KRICGQEEFTCRSSPGECV 109
F+C CIP W CD DC DG DE ++C+ C EF C S GEC+
Sbjct: 12 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS--GECI 69
Query: 110 PLTWMCDDNPDCSDGSDEKSCKNRT 134
+W CD PDC D SDE++C T
Sbjct: 70 HSSWRCDGGPDCKDKSDEENCAVAT 94
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 43/128 (33%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQ 193
TC + F+C ++ CIP W CD + DC D SDE P+ C G
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG-------------------- 45
Query: 194 INAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCP 253
L + S PC ++ F C G CI S+W CDG DC
Sbjct: 46 ----------------------LYVFQGDSSPC-SAFEFHCLSGECIHSSWRCDGGPDCK 82
Query: 254 DGVDEKKC 261
D DE+ C
Sbjct: 83 DKSDEENC 90
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCH---------ETCRSDEFTCANGNCIQR 280
F+C CIP W CD DC DG DE ++C C + EF C +G CI
Sbjct: 12 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 71
Query: 281 IW 282
W
Sbjct: 72 SW 73
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
S PC ++ F C G CI S+W CDG DC D DE+ C
Sbjct: 53 SSPC-SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 90
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 364 IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSN 423
I VC+ DC DE +CG +EC +NGGC H C DL +GY C C +G++L +
Sbjct: 20 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 79
Query: 424 RH 425
R
Sbjct: 80 RR 81
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 138 SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAH 197
++F+C + CI C+ DC D SDE + C G N C NG CSH+C N
Sbjct: 10 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC-GTNECLDNNGGCSHVC------NDL 62
Query: 198 SPKISCACPEGLKLL 212
C CP+G +L+
Sbjct: 63 KIGYECLCPDGFQLV 77
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 106 GECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSD 165
G+ + CD DC D SDE CK CQ F C + CIP+ +QC+GE DC +
Sbjct: 214 GKYISQMKACDGINDCGDQSDELCCK--ACQGKGFHCKSGVCIPSQYQCNGEVDCI--TG 269
Query: 166 EDPEMCNGVNHCAAVNGHCSHLCLPAP--QINAHSPKISCACPEGLKLLPDLLMC---AE 220
ED C G A + A +I + PK+SC + + ++ A+
Sbjct: 270 EDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRKRIVGGKRAQ 329
Query: 221 AGSKP----CRNSTMFRCTGGMCIPSTWV 245
G P ++++ C GG+ I W+
Sbjct: 330 LGDLPWQVAIKDASGITC-GGIYIGGCWI 357
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 37 VDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQ 96
+ Y F Y + F+C G I CDG NDC D DE C + C
Sbjct: 186 MGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCC--KACQG 243
Query: 97 EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASE 139
+ F C+S G C+P + C+ DC G DE C A E
Sbjct: 244 KGFHCKS--GVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQE 284
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCI 278
F+C G I CDG NDC D DE C + C+ F C +G CI
Sbjct: 208 FFQCVNGKYISQMKACDGINDCGDQSDE-LCCKACQGKGFHCKSGVCI 254
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
F C G+CIPS + C+G+ DC G DE C
Sbjct: 246 FHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 140 FRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHC-SHLCLPA 191
F+C N + I CDG DC D+SD E+C C HC S +C+P+
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSD---ELC--CKACQGKGFHCKSGVCIPS 256
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
CQ EF C N+RCI W+CDG+ DC D SDE P +C+
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CHE 263
F C CI W CDG NDC D DE CH+
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDE 86
F C CI W CDG NDC D DE
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGDT 328
P +C G+F C N + CI ++W CDGD
Sbjct: 3 PPQCQPGEFACAN-SRCIQERWKCDGDN 29
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 389 VDECAKDNGGC-LHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
VDEC+ C C ++P + CEC EGY+ + +C DIDEC + C+Q+C+N
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC-SENMCAQLCVNYP 61
Query: 448 GGFKCEC 454
GG+ C C
Sbjct: 62 GGYTCYC 68
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECN--EGYKLSSNRHTC 427
+DEC+++ C CV+ P GY C C+ +G+KL+ ++ +C
Sbjct: 45 IDECSENM--CAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
+C +++F+C + RCIP HW CDG+ DC D SDE C
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 258
GS C +ST F+C G CIP W CDG NDC D DE
Sbjct: 1 GSHSC-SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 57 STMFRCTGGMCIPSTWVCDGQNDCPDGVDE 86
ST F+C G CIP W CDG NDC D DE
Sbjct: 7 STQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
C +F C S G C+P W CD + DC D SDE
Sbjct: 5 CSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDE 36
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 303 KCTAGQFTCQNLTACIPDKWVCDGD 327
C++ QF C N CIP+ W CDGD
Sbjct: 4 SCSSTQFKC-NSGRCIPEHWTCDGD 27
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 134 TCQASEFRCGN--NRCIPNHWQCDGEFDCSDKSDE 166
TC++ +F CG NRCIP W+CDG+ DC + SDE
Sbjct: 6 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
C +F+C C+P W CD DC +GSDE+ C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 57 STMFRCTGGM--CIPSTWVCDGQNDCPDGVDEKKC 89
S F C G + CIP W CDGQ DC +G DE+ C
Sbjct: 9 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 229 STMFRCTGGM--CIPSTWVCDGQNDCPDGVDEKKC 261
S F C G + CIP W CDGQ DC +G DE+ C
Sbjct: 9 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
TC + F+C ++ CIP W CD + DC D SDE P+ C G
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG 40
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 93 ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
CG F C SS C+P W CD++PDC DGSDE
Sbjct: 1 TCGPASFQCNSS--TCIPQLWACDNDPDCEDGSDE 33
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDE 86
F+C CIP W CD DC DG DE
Sbjct: 7 FQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDE 258
F+C CIP W CD DC DG DE
Sbjct: 7 FQCNSSTCIPQLWACDNDPDCEDGSDE 33
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
+ C+ +F+C N RCIP+ W+CD + DC D SDED
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 59 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK 91
F+C CIPS W CD +DC D DE C K
Sbjct: 12 QFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 222 GSKPCRN--STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
GS P + F+C CIPS W CD +DC D DE C
Sbjct: 1 GSGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
+ C +++F CR+ C+P W CD++ DC D SDE C
Sbjct: 6 KECEKDQFQCRNE--RCIPSVWRCDEDDDCLDHSDEDDC 42
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ-ICLNE 446
+DEC K+ C H +C++ Y CEC GY L+ N C+D DEC C C N
Sbjct: 5 MDEC-KEPDVCKHGQCINTDGSYRCECPFGYILAGNE--CVDTDECSVGNPCGNGTCKNV 61
Query: 447 KGGFKCECVAGYIKDP 462
GGF+C C G+ P
Sbjct: 62 IGGFECTCEEGFEPGP 77
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 428 IDIDECETPGSCSQ-ICLNEKGGFKCECVAGYI 459
+D+DEC+ P C C+N G ++CEC GYI
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI 35
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
C +EF CR G C+PL W CD + DC D SDEKSC+
Sbjct: 4 CHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 135 CQASEFRCG-NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
C EF+C + CIP W+CDG+ DC D SDE + C GV
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE--KSCEGV 42
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 65 GMCIPSTWVCDGQNDCPDGVDEKKCQ 90
G+CIP W CDG DC D DEK C+
Sbjct: 15 GLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 237 GMCIPSTWVCDGQNDCPDGVDEKKCH 262
G+CIP W CDG DC D DEK C
Sbjct: 15 GLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDST 334
P C +F C+ CIP +W CDGDT DS+
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSS 34
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 412 CECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCEC 454
CEC EGY L + C DIDECE G CS +C N G F+C C
Sbjct: 63 CECPEGYILD-DGFICTDIDECENGGFCSGVCHNLPGTFECIC 104
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 412 CECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCEC 454
CEC EGY L + C DIDECE G CS +C N G F+C C
Sbjct: 63 CECPEGYILD-DGFICTDIDECENGGFCSGVCHNLPGTFECIC 104
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 230 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET 264
T + C CI WVCD NDC DG DEK C+ T
Sbjct: 10 TQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNST 44
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
T + C CI WVCD NDC DG DEK C
Sbjct: 10 TQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK 131
C ++TC + +C+ W+CD + DC DGSDEK+C
Sbjct: 7 CLDTQYTCDNH--QCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
+C +++ C N++CI +W CD + DC D SDE
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 135 CQASEFRCGNNR--CIPNHWQCDGEFDCSDKSDEDPEMCN 172
C+ F+CG N CI + CDG DC + DEDP++C+
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 92
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGN 144
C + F C + EC+ +CD + DC + DE C S + GN
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP---DVCDTSVVKAGN 100
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
C+ +EF+C + +CI W CDG +C D SDE E C V
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV 47
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRS 267
F+C G CI WVCDG +C DG DE + ETC S
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQ--ETCLS 46
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK 88
F+C G CI WVCDG +C DG DE +
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQ 41
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
C + EF C+ G+C+ W+CD + +C DGSDE
Sbjct: 8 CERNEFQCQ--DGKCISYKWVCDGSAECQDGSDE 39
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 402 KCVDLPVGYMCECNEGYKLS-SNRHTCIDIDECET-PGSC-SQICLNEKGGFKCECVAGY 458
+CV+ P + C+C+EGY+ C+DIDEC+ P C +C N +G ++CEC G+
Sbjct: 17 QCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGH 76
Query: 459 IKDPH 463
P+
Sbjct: 77 QLSPN 81
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 131 KNRTCQASEFRC-GNNRCIPNHWQCDGEFDCSDKSDE 166
+ +TC S F C G + C+P W CDG+ DC+D +DE
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 88 KCQKRICGQEEFTCRSSPGE--CVPLTWMCDDNPDCSDGSDE 127
K + + CG F+C PG CVP W+CD + DC+DG+DE
Sbjct: 3 KLEGKTCGPSSFSC---PGTHVCVPERWLCDGDKDCADGADE 41
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 58 TMFRCTGG-MCIPSTWVCDGQNDCPDGVDE 86
+ F C G +C+P W+CDG DC DG DE
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 230 TMFRCTGG-MCIPSTWVCDGQNDCPDGVDE 258
+ F C G +C+P W+CDG DC DG DE
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 304 CTAGQFTCQNLTACIPDKWVCDGD 327
C F+C C+P++W+CDGD
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGD 32
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
R C E +C + +C+P++W CD DC G DE++C N
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 41
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 133 RTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDED 167
RTC+ E CG + +CIP W+CDGE DC DE+
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 37
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 66 MCIPSTWVCDGQNDCPDGVDEKKC 89
CIP +W CDG+NDC G DE+ C
Sbjct: 16 QCIPVSWRCDGENDCDSGEDEENC 39
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 238 MCIPSTWVCDGQNDCPDGVDEKKC 261
CIP +W CDG+NDC G DE+ C
Sbjct: 16 QCIPVSWRCDGENDCDSGEDEENC 39
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 131 KNRTCQASEFRC-GNNRCIPNHWQCDGEFDCSDKSDE 166
+ +TC S F C G + C+P W CDG+ DC+D +DE
Sbjct: 3 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 90 QKRICGQEEFTCRSSPGE--CVPLTWMCDDNPDCSDGSDEK 128
+ + CG F+C PG CVP W+CD + DC+DG+DE
Sbjct: 3 EGKTCGPSSFSC---PGTHVCVPERWLCDGDKDCADGADES 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 58 TMFRCTGG-MCIPSTWVCDGQNDCPDGVDEK 87
+ F C G +C+P W+CDG DC DG DE
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 230 TMFRCTGG-MCIPSTWVCDGQNDCPDGVDEK 259
+ F C G +C+P W+CDG DC DG DE
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 304 CTAGQFTCQNLTACIPDKWVCDGD 327
C F+C C+P++W+CDGD
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGD 30
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 94 CGQEEFTCRSSPG---ECVPLTWMCDDNPDCSDGSDEKSC 130
C +F C PG EC P W+CD +PDC DG DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 219 AEAGSKPCRNSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 261
+E GS P FRC+ G C P W+CDG DC DG DE C
Sbjct: 2 SEFGSCP---PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 59 MFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 89
FRC+ G C P W+CDG DC DG DE C
Sbjct: 11 QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 134 TCQASEFRC-----GNNRCIPNHWQCDGEFDCSDKSDE 166
+C +FRC + C P W CDG DC D DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 94 CGQEEFTCRSSPG---ECVPLTWMCDDNPDCSDGSDEKSC 130
C +F C PG EC P W+CD +PDC DG DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 59 MFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 89
FRC+ G C P W+CDG DC DG DE C
Sbjct: 9 QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 231 MFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 261
FRC+ G C P W+CDG DC DG DE C
Sbjct: 9 QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 135 CQASEFRC-----GNNRCIPNHWQCDGEFDCSDKSDE 166
C +FRC + C P W CDG DC D DE
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
C A EF C + CI + W+CDG DC DKSDE+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE 34
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
C EF C S GEC+ +W CD PDC D SDE++C
Sbjct: 2 CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
PC ++ F C G CI S+W CDG DC D DE+ C
Sbjct: 1 PC-SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 225 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
PC ++ F C G CI S+W CDG DC D DE+ C
Sbjct: 1 PC-SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 126 DEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS 185
+E CKN+ FRC + RCI +C+GE DC D SDE C C+
Sbjct: 115 EEADCKNK------FRCDSGRCIARKLECNGENDCGDNSDE--------RDCGRTKAVCT 160
Query: 186 HLCLPAPQIN 195
P P +
Sbjct: 161 RKYNPIPSVQ 170
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 226 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET 264
C+N FRC G CI C+G+NDC D DE+ C T
Sbjct: 119 CKNK--FRCDSGRCIARKLECNGENDCGDNSDERDCGRT 155
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK 91
C+N FRC G CI C+G+NDC D DE+ C +
Sbjct: 119 CKNK--FRCDSGRCIARKLECNGENDCGDNSDERDCGR 154
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
TC+ EF+C + CI QCD E+DC D SDE
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
TC+ EF+C + CI QCD E+DC D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 414 CNEGYKLSSNRHTCIDIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKD 461
C +GY C DIDECE PG C +C+N +G FKC+C +G D
Sbjct: 92 CGKGYSRIKGTQ-CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLD 140
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 429 DIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
DIDECE+ + +C N G F CEC + DP
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTK 38
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
C E +C + +C+P++W CD DC G DE++C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 66 MCIPSTWVCDGQNDCPDGVDEKKC 89
CIP +W CDG+NDC G DE+ C
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENC 37
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 238 MCIPSTWVCDGQNDCPDGVDEKKC 261
CIP +W CDG+NDC G DE+ C
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENC 37
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 135 CQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDED 167
C+ E CG + +CIP W+CDGE DC DE+
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 429 DIDECE-TPG---SCSQICLNEKGGFKCECVAGYI 459
DIDEC+ PG +C C N GGF C C AGY+
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 389 VDECAKDNG---GCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC G C H C + G+ C C GY L N+ TC
Sbjct: 124 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 389 VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC-ETPGSCSQICLN 445
VDEC+ C H KC++ + C+C +GY ID++EC P CL+
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNPCQNDATCLD 61
Query: 446 EKGGFKCECVAGY 458
+ G F+C C+ GY
Sbjct: 62 QIGEFQCICMPGY 74
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 35/145 (24%)
Query: 331 KDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVD 390
+DS+C NAT + PGF+ +I+ T P+ +D +C
Sbjct: 11 QDSSCVNATACRCN-----------PGFSSFSEIITT---------PMETCDDINECAT- 49
Query: 391 ECAKDNGGCLHKCVDLPVGYMCECNEGYKLSS--------NRHTCIDIDECETPG---SC 439
+K + G C + Y C C+ GY+ S + +TC D+DEC +
Sbjct: 50 -LSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDS 108
Query: 440 SQICLNEKGGFKCECVAGYIKDPHH 464
S +C N G + C C G+ P H
Sbjct: 109 STVCFNTVGSYSCRCRPGW--KPRH 131
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 389 VDECAK---DNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLN 445
VDEC D+ C H C GY C C GY L N+HTC + CS
Sbjct: 120 VDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSAL--------CSGQVFT 171
Query: 446 EKGGF 450
+ GF
Sbjct: 172 GRSGF 176
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 136 QASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
SE R CI + CDGE DC D SDEDPE C+
Sbjct: 57 HESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 93
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 90 QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
++ C + E CR EC+ CD DC DGSDE
Sbjct: 50 EEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 206 PEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 261
P+ ++ L E P + +C G CI +VCDG NDC +G DEK C
Sbjct: 34 PKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 91
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 66 MCIPSTWVCDGQNDCPDGVDEKKC 89
CI +VCDG NDC +G DEK C
Sbjct: 68 QCISKLFVCDGHNDCRNGEDEKDC 91
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEF 140
C + E C +C+ ++CD + DC +G DEK C T +F
Sbjct: 55 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKF 101
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 389 VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC-ETPGSCSQICLN 445
VDEC+ C H KC++ + C+C +GY ID++EC P CL+
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNPCQNDATCLD 59
Query: 446 EKGGFKCECVAGY 458
+ G F+C C+ GY
Sbjct: 60 QIGEFQCICMPGY 72
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 135 CQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDE 166
C +++F+C + + CI + ++CDG +DC D SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 57 STMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQKR 92
S F+C G CI S + CDG DC D DE C R
Sbjct: 9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 229 STMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKC 261
S F+C G CI S + CDG DC D DE C
Sbjct: 9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 126 DEKSCKNRTCQASEFRCGNN-------RCIPNHWQCDGEFDCSDKSDED 167
D+ SC + T + +CG + RC+ H C+G+ DC D SDED
Sbjct: 50 DQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDED 98
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
CGQ+ F C+ + G C+ +C+ + DC DGSDE C++
Sbjct: 66 CGQD-FQCKET-GRCLKRHLVCNGDQDCLDGSDEDDCED 102
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 232 FRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDE 269
F+C G C+ VC+G DC DG DE C + DE
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDE 108
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 49 WRSKPCRNSTM----------FRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
W C +ST F+C G C+ VC+G DC DG DE C+
Sbjct: 49 WDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCE 101
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 389 VDECAKDNGG--------CLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DECA + C H C + GY C C GY+L +RH+C
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 51 SKPCRNSTMFRCTG------GMCIPSTWVCDGQNDCPDGVDEKKCQK 91
++PCR + RC G G C+ +C+G NDC D DE C++
Sbjct: 59 NRPCR--SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR 103
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 223 SKPCRNSTMFRCTG------GMCIPSTWVCDGQNDCPDGVDEKKCHE 263
++PCR + RC G G C+ +C+G NDC D DE C
Sbjct: 59 NRPCR--SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR 103
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 97 EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN--RTCQ 136
E F C + G CV +C+ + DC D SDE +C+ + CQ
Sbjct: 69 EGFVC-AQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQ 109
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 122 SDGSDEKSCKNRTCQASEFRC------GNNRCIPNHWQCDGEFDCSDKSDE 166
SD E NR C+ S+ RC RC+ C+G+ DC D+SDE
Sbjct: 49 SDKEVEDCVTNRPCR-SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
GC H C+ Y C C +GY+L + C+ D+C
Sbjct: 12 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
GC H C+ Y C C +GY+L + C+ D+C
Sbjct: 53 GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 399 CLH--KCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC--ETPGSCSQICLNEKGGFKCEC 454
CLH C D GY C C+ GY+ S+ + +EC E C CL + + C C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCE---LAKNECHPERTDGCQHFCLPGQESYTCSC 69
Query: 455 VAGY 458
GY
Sbjct: 70 AQGY 73
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 142 CGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN---GVNHCAAVNGHCSHLCLPAPQINAHS 198
CG+ CI G F C +S + C +C+ NG C+H CL
Sbjct: 23 CGHGTCIXG----IGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWR--- 75
Query: 199 PKISCACPEGLKLLPDLLMCAEAGSKPC 226
C+C G KL DLL C A PC
Sbjct: 76 ---RCSCAPGYKLGDDLLQCHPAVKFPC 100
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
C+ DNGGC H C++ C C GYKL + C
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 92
>pdb|2K2S|B Chain B, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
pdb|2K2T|A Chain A, Epidermal Growth Factor-Like Domain 2 From Toxoplasma
Gondii Microneme Protein 6
Length = 61
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLS---SNRHTCIDIDE 432
E P C + C + G C + GY+C CN+GY++S + TCI E
Sbjct: 8 SETPAACSSNPCGPEAAG---TCKETNSGYICRCNQGYRISLDGTGNVTCIVRQE 59
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 411 MCECNEGYKLSSNRHTCIDIDEC-ETPGSC-SQICLNEKGGFKCECVAGY 458
+C EG++ + DIDEC E PG C C+N G F+C C GY
Sbjct: 103 LCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 411 MCECNEGYKLSSNRHTCIDIDEC-ETPGSC-SQICLNEKGGFKCECVAGY 458
+C EG++ + DIDEC E PG C C+N G F+C C GY
Sbjct: 103 LCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 142 CGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN---GVNHCAAVNGHCSHLCLPAPQINAHS 198
CG+ CI G F C +S + C +C+ NG C+H CL
Sbjct: 16 CGHGTCIDG----IGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWR--- 68
Query: 199 PKISCACPEGLKLLPDLLMCAEAGSKPC 226
C+C G KL DLL C A PC
Sbjct: 69 ---RCSCAPGYKLGDDLLQCHPAVKFPC 93
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
C+ DNGGC H C++ C C GYKL + C
Sbjct: 50 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 85
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 424 RHTCIDIDEC----ETPGSCSQICLNEKGGFKCECVAGYI 459
+ +D+DEC + SC C N GG+ C C GYI
Sbjct: 115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 389 VDECAK---DNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
VDEC + + C H C + GY C C GY L ++ TC
Sbjct: 121 VDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 300 QPVKCTAGQFTCQNLTACIPDKWVCDG 326
Q VKC+ G F C N+T C+P C+G
Sbjct: 3 QDVKCSLGYFPCGNITKCLPQLLHCNG 29
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 131 KNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDED 167
++ C F CGN +C+P C+G DC +++DED
Sbjct: 3 QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 424 RHTCIDIDEC----ETPGSCSQICLNEKGGFKCECVAGYI 459
+ +D+DEC + SC C N GG+ C C GYI
Sbjct: 115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 389 VDECAK---DNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
VDEC + + C H C + GY C C GY L ++ TC
Sbjct: 121 VDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428
C+ DNG C C + +C C GY L+ N CI
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428
C+ DNG C C + +C C GY L+ N CI
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 80
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
C NG C C + A S K+ C+C G +L PD C A PC
Sbjct: 88 CNIKNGRCKQFC----KTGADS-KVLCSCTTGYRLAPDQKSCKPAVPFPC 132
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428
C+ DNG C C + +C C GY L+ N CI
Sbjct: 46 CSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKACI 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,562,589
Number of Sequences: 62578
Number of extensions: 1078202
Number of successful extensions: 2819
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2014
Number of HSP's gapped (non-prelim): 495
length of query: 734
length of database: 14,973,337
effective HSP length: 106
effective length of query: 628
effective length of database: 8,340,069
effective search space: 5237563332
effective search space used: 5237563332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)