Query psy8875
Match_columns 734
No_of_seqs 579 out of 3582
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 21:35:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 3.5E-50 7.5E-55 430.9 31.3 332 375-714 812-1233(1289)
2 KOG1215|consensus 100.0 4E-48 8.6E-53 465.1 44.4 573 51-711 28-643 (877)
3 KOG1214|consensus 100.0 1.2E-35 2.6E-40 319.4 26.5 316 402-728 800-1204(1289)
4 KOG1215|consensus 100.0 1.7E-33 3.7E-38 338.6 35.9 508 67-664 110-639 (877)
5 PF08450 SGL: SMP-30/Gluconola 99.8 3.2E-18 7E-23 176.0 23.9 212 505-728 2-231 (246)
6 PLN02919 haloacid dehalogenase 99.8 7.6E-17 1.6E-21 194.9 29.1 214 500-715 565-841 (1057)
7 PLN02919 haloacid dehalogenase 99.8 4.2E-16 9.1E-21 188.5 33.3 233 476-711 581-892 (1057)
8 PF08450 SGL: SMP-30/Gluconola 99.6 1.6E-13 3.5E-18 141.0 25.6 210 475-696 12-245 (246)
9 KOG4659|consensus 99.5 2.2E-13 4.9E-18 154.6 19.5 227 472-705 373-689 (1899)
10 COG3386 Gluconolactonase [Carb 99.5 8.4E-13 1.8E-17 137.8 22.6 209 502-718 24-253 (307)
11 PF10282 Lactonase: Lactonase, 99.4 1.9E-10 4E-15 124.3 30.4 224 501-726 85-342 (345)
12 COG3391 Uncharacterized conser 99.3 1.1E-09 2.5E-14 119.5 26.7 235 489-728 17-259 (381)
13 PRK11028 6-phosphogluconolacto 99.3 3.4E-09 7.3E-14 114.0 29.7 223 502-727 79-325 (330)
14 PRK11028 6-phosphogluconolacto 99.3 4.4E-09 9.6E-14 113.1 30.0 224 482-706 11-257 (330)
15 PF10282 Lactonase: Lactonase, 99.3 3.9E-09 8.5E-14 114.0 28.8 244 483-728 13-298 (345)
16 KOG4659|consensus 99.3 2.3E-10 4.9E-15 130.8 19.4 197 502-709 364-624 (1899)
17 COG3391 Uncharacterized conser 99.2 6.2E-09 1.3E-13 113.7 27.6 209 503-716 74-292 (381)
18 TIGR02604 Piru_Ver_Nterm putat 99.2 5.3E-09 1.2E-13 113.8 24.6 197 502-706 13-299 (367)
19 COG3386 Gluconolactonase [Carb 99.1 4E-08 8.7E-13 102.9 27.1 228 476-714 38-295 (307)
20 PF06977 SdiA-regulated: SdiA- 99.1 7.5E-08 1.6E-12 97.4 25.8 200 502-704 21-247 (248)
21 KOG4499|consensus 99.1 1.7E-08 3.8E-13 96.8 19.1 205 506-716 18-250 (310)
22 PF00057 Ldl_recept_a: Low-den 99.0 1.6E-10 3.4E-15 79.8 3.1 36 53-89 2-37 (37)
23 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.9E-07 1.1E-11 96.0 28.3 234 483-727 27-348 (352)
24 cd00112 LDLa Low Density Lipop 99.0 2.8E-10 6.1E-15 77.7 2.5 35 54-89 1-35 (35)
25 COG2706 3-carboxymuconate cycl 99.0 5.9E-07 1.3E-11 92.0 26.9 223 502-726 88-341 (346)
26 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 1.5E-06 3.3E-11 91.1 31.0 236 483-728 53-297 (300)
27 PF00058 Ldl_recept_b: Low-den 98.9 2.8E-09 6.1E-14 76.3 6.4 42 602-643 1-42 (42)
28 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 3E-06 6.5E-11 88.9 31.1 229 482-715 10-245 (300)
29 PF03022 MRJP: Major royal jel 98.9 4.5E-07 9.8E-12 94.7 24.1 191 504-697 2-255 (287)
30 TIGR02604 Piru_Ver_Nterm putat 98.8 1.6E-07 3.5E-12 102.2 19.7 152 545-706 12-212 (367)
31 COG2706 3-carboxymuconate cycl 98.8 5E-06 1.1E-10 85.3 26.9 228 482-710 15-279 (346)
32 PF00057 Ldl_recept_a: Low-den 98.8 3.3E-09 7.1E-14 73.2 2.7 35 134-168 2-36 (37)
33 PF00058 Ldl_recept_b: Low-den 98.8 2.2E-08 4.7E-13 71.7 6.4 41 559-599 1-42 (42)
34 PF07995 GSDH: Glucose / Sorbo 98.8 8.1E-07 1.8E-11 95.1 21.2 203 502-710 1-292 (331)
35 KOG1520|consensus 98.7 2.5E-07 5.4E-12 96.3 16.0 177 514-695 75-282 (376)
36 cd00112 LDLa Low Density Lipop 98.7 4.6E-09 9.9E-14 71.7 2.0 34 135-168 1-34 (35)
37 PF07995 GSDH: Glucose / Sorbo 98.7 1.8E-06 3.8E-11 92.6 22.9 224 476-703 14-331 (331)
38 PF14670 FXa_inhibition: Coagu 98.7 5.8E-09 1.3E-13 71.0 1.7 36 392-427 1-36 (36)
39 smart00192 LDLa Low-density li 98.7 1.7E-08 3.7E-13 68.0 2.9 32 54-86 2-33 (33)
40 KOG1520|consensus 98.6 1.4E-06 3.1E-11 90.8 17.4 142 503-651 115-280 (376)
41 COG4257 Vgb Streptogramin lyas 98.6 7.5E-06 1.6E-10 80.9 20.3 204 499-710 58-265 (353)
42 TIGR03118 PEPCTERM_chp_1 conse 98.6 1.4E-05 3E-10 80.7 22.4 219 499-728 19-298 (336)
43 COG4257 Vgb Streptogramin lyas 98.6 8.7E-06 1.9E-10 80.5 20.4 231 476-715 74-312 (353)
44 PF12999 PRKCSH-like: Glucosid 98.5 7.6E-08 1.6E-12 90.0 4.9 69 57-127 35-110 (176)
45 smart00192 LDLa Low-density li 98.5 4.6E-08 1E-12 65.9 2.4 32 135-166 2-33 (33)
46 TIGR03606 non_repeat_PQQ dehyd 98.5 1.2E-05 2.5E-10 88.2 21.8 166 494-662 21-260 (454)
47 PRK04043 tolB translocation pr 98.5 0.00014 2.9E-09 80.5 29.6 232 483-724 169-417 (419)
48 PRK04792 tolB translocation pr 98.5 7.7E-05 1.7E-09 83.5 27.8 227 484-717 199-434 (448)
49 PRK05137 tolB translocation pr 98.5 0.00013 2.7E-09 81.7 29.3 226 484-716 183-420 (435)
50 PRK04922 tolB translocation pr 98.5 7.9E-05 1.7E-09 83.3 27.2 226 484-716 185-419 (433)
51 PF06977 SdiA-regulated: SdiA- 98.4 1.8E-05 3.9E-10 80.3 19.5 181 545-728 20-228 (248)
52 COG3204 Uncharacterized protei 98.4 3.5E-05 7.5E-10 77.5 20.4 200 502-706 85-311 (316)
53 PF12999 PRKCSH-like: Glucosid 98.4 3.3E-07 7.2E-12 85.8 4.7 76 96-173 35-117 (176)
54 PRK03629 tolB translocation pr 98.4 0.00033 7.2E-09 78.1 29.2 227 484-717 180-415 (429)
55 smart00135 LY Low-density lipo 98.4 9.9E-07 2.1E-11 63.6 5.9 42 627-668 2-43 (43)
56 TIGR02800 propeller_TolB tol-p 98.3 0.00037 8E-09 77.4 28.8 227 484-716 171-405 (417)
57 PRK00178 tolB translocation pr 98.3 0.00035 7.7E-09 78.0 28.6 226 484-716 180-414 (430)
58 PF02239 Cytochrom_D1: Cytochr 98.3 0.00019 4.2E-09 77.9 25.3 245 476-727 50-363 (369)
59 TIGR03606 non_repeat_PQQ dehyd 98.3 0.00011 2.4E-09 80.7 22.2 154 542-699 25-251 (454)
60 PF03022 MRJP: Major royal jel 98.3 6.2E-05 1.3E-09 78.7 19.0 153 502-657 60-258 (287)
61 PRK01029 tolB translocation pr 98.3 0.00061 1.3E-08 75.8 27.9 228 483-715 165-411 (428)
62 PF03088 Str_synth: Strictosid 98.3 4.8E-06 1E-10 69.8 8.4 73 593-666 1-89 (89)
63 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00034 7.5E-09 74.5 24.0 198 514-718 12-298 (352)
64 PRK02889 tolB translocation pr 98.2 0.00077 1.7E-08 75.1 28.0 227 483-716 176-411 (427)
65 PF12662 cEGF: Complement Clr- 98.2 6.8E-07 1.5E-11 54.5 1.8 24 409-432 1-24 (24)
66 KOG4260|consensus 98.2 1.3E-06 2.8E-11 85.2 4.7 145 276-463 123-272 (350)
67 PF07645 EGF_CA: Calcium-bindi 98.2 1E-06 2.3E-11 63.1 2.7 40 388-427 1-42 (42)
68 cd00200 WD40 WD40 domain, foun 98.2 0.0023 5E-08 65.2 28.5 227 482-716 30-258 (289)
69 KOG1219|consensus 98.2 2E-06 4.3E-11 103.7 5.8 107 264-429 3866-3978(4289)
70 KOG4260|consensus 98.2 3.2E-06 7E-11 82.5 6.3 78 375-460 221-305 (350)
71 PRK04043 tolB translocation pr 98.1 0.00084 1.8E-08 74.3 25.2 192 483-681 213-417 (419)
72 KOG1219|consensus 98.1 4E-06 8.7E-11 101.2 6.1 83 375-462 3889-3975(4289)
73 smart00135 LY Low-density lipo 98.1 7.9E-06 1.7E-10 58.8 5.5 40 541-580 3-42 (43)
74 TIGR03118 PEPCTERM_chp_1 conse 98.1 0.00036 7.9E-09 70.7 19.0 182 541-729 17-251 (336)
75 PRK01742 tolB translocation pr 98.1 0.002 4.3E-08 71.9 27.2 223 483-716 184-412 (429)
76 PRK04792 tolB translocation pr 98.0 0.0013 2.7E-08 73.8 24.5 184 484-672 243-433 (448)
77 PF02239 Cytochrom_D1: Cytochr 98.0 0.0025 5.4E-08 69.3 25.6 188 482-673 15-211 (369)
78 PF14670 FXa_inhibition: Coagu 97.9 6.9E-06 1.5E-10 56.1 2.8 31 436-466 5-35 (36)
79 PRK05137 tolB translocation pr 97.9 0.0022 4.8E-08 71.7 24.3 185 483-672 226-420 (435)
80 KOG1217|consensus 97.9 0.00033 7.2E-09 79.1 18.0 274 121-456 114-421 (487)
81 PRK04922 tolB translocation pr 97.9 0.0021 4.6E-08 71.8 24.0 186 483-673 228-420 (433)
82 COG3204 Uncharacterized protei 97.9 0.00063 1.4E-08 68.6 17.2 165 485-652 110-301 (316)
83 PF03088 Str_synth: Strictosid 97.9 4.1E-05 9E-10 64.2 7.6 70 551-622 2-88 (89)
84 TIGR03032 conserved hypothetic 97.9 0.0065 1.4E-07 62.4 24.3 229 475-715 18-298 (335)
85 COG2133 Glucose/sorbosone dehy 97.9 0.00098 2.1E-08 71.6 18.7 157 547-707 177-397 (399)
86 cd00200 WD40 WD40 domain, foun 97.8 0.011 2.4E-07 60.1 26.4 212 482-701 72-285 (289)
87 PF07645 EGF_CA: Calcium-bindi 97.8 2.3E-05 4.9E-10 56.2 3.8 36 429-464 1-39 (42)
88 PRK01029 tolB translocation pr 97.7 0.0082 1.8E-07 66.8 24.5 189 483-673 211-412 (428)
89 PRK00178 tolB translocation pr 97.7 0.0083 1.8E-07 67.0 24.6 185 483-672 223-414 (430)
90 PRK03629 tolB translocation pr 97.7 0.0098 2.1E-07 66.3 24.8 186 483-673 223-415 (429)
91 PRK02889 tolB translocation pr 97.7 0.011 2.3E-07 66.0 24.5 185 483-672 220-411 (427)
92 TIGR02800 propeller_TolB tol-p 97.6 0.012 2.5E-07 65.4 24.2 184 483-671 214-404 (417)
93 KOG1217|consensus 97.6 0.00052 1.1E-08 77.5 12.3 209 198-460 107-349 (487)
94 KOG1446|consensus 97.6 0.11 2.5E-06 52.9 26.9 195 517-718 72-273 (311)
95 KOG4499|consensus 97.5 0.003 6.4E-08 61.6 14.6 93 486-579 141-243 (310)
96 COG4946 Uncharacterized protei 97.4 0.02 4.3E-07 61.1 20.5 220 454-704 38-302 (668)
97 PF05096 Glu_cyclase_2: Glutam 97.4 0.049 1.1E-06 55.3 22.7 173 483-665 68-262 (264)
98 COG5276 Uncharacterized conser 97.4 0.083 1.8E-06 53.5 23.7 219 475-704 97-326 (370)
99 PF02333 Phytase: Phytase; In 97.4 0.042 9.1E-07 58.9 22.9 190 474-667 67-293 (381)
100 KOG4289|consensus 97.4 0.0017 3.7E-08 76.6 13.0 78 375-457 1225-1308(2531)
101 PRK02888 nitrous-oxide reducta 97.2 0.017 3.6E-07 65.3 18.6 190 514-706 141-403 (635)
102 PF05096 Glu_cyclase_2: Glutam 97.2 0.049 1.1E-06 55.3 20.1 159 550-716 48-212 (264)
103 PF13360 PQQ_2: PQQ-like domai 97.2 0.31 6.6E-06 49.2 28.1 180 514-713 36-236 (238)
104 PRK01742 tolB translocation pr 97.2 0.069 1.5E-06 59.6 23.1 178 484-672 229-412 (429)
105 KOG1446|consensus 97.1 0.26 5.6E-06 50.4 23.6 205 502-715 14-225 (311)
106 KOG4289|consensus 97.1 0.00043 9.2E-09 81.5 4.3 85 199-300 1220-1316(2531)
107 PF06433 Me-amine-dh_H: Methyl 97.0 0.13 2.8E-06 54.1 21.6 198 509-717 101-330 (342)
108 PF01436 NHL: NHL repeat; Int 97.0 0.0015 3.3E-08 42.1 4.7 28 633-661 1-28 (28)
109 PF02333 Phytase: Phytase; In 97.0 0.078 1.7E-06 56.9 19.8 120 587-707 153-290 (381)
110 COG5276 Uncharacterized conser 96.9 0.17 3.7E-06 51.3 19.8 181 509-700 91-279 (370)
111 COG2133 Glucose/sorbosone dehy 96.8 0.069 1.5E-06 57.7 18.2 159 504-665 178-398 (399)
112 KOG0291|consensus 96.8 0.52 1.1E-05 53.6 25.1 160 502-666 350-510 (893)
113 COG4946 Uncharacterized protei 96.8 0.18 4E-06 54.0 20.5 131 561-697 374-509 (668)
114 KOG0279|consensus 96.8 0.44 9.5E-06 48.0 21.9 205 504-715 65-270 (315)
115 COG0823 TolB Periplasmic compo 96.7 0.3 6.4E-06 54.1 22.6 227 484-715 174-409 (425)
116 KOG1225|consensus 96.7 0.0069 1.5E-07 67.2 9.6 132 75-260 233-365 (525)
117 KOG0291|consensus 96.5 0.56 1.2E-05 53.3 22.6 212 500-715 390-620 (893)
118 KOG1225|consensus 96.5 0.011 2.3E-07 65.8 9.5 15 58-72 99-113 (525)
119 PF01436 NHL: NHL repeat; Int 96.5 0.0047 1E-07 39.8 4.1 28 546-574 1-28 (28)
120 KOG0315|consensus 96.5 1.1 2.3E-05 44.6 23.1 184 475-665 10-198 (311)
121 KOG0289|consensus 96.4 1.1 2.3E-05 47.9 22.9 201 500-705 301-503 (506)
122 PTZ00421 coronin; Provisional 96.4 2.4 5.2E-05 48.0 31.1 120 500-621 73-198 (493)
123 KOG0273|consensus 96.4 0.94 2E-05 48.8 22.3 136 482-622 256-392 (524)
124 smart00179 EGF_CA Calcium-bind 96.3 0.0038 8.3E-08 43.5 2.9 35 389-427 2-38 (39)
125 KOG0285|consensus 96.3 0.75 1.6E-05 47.9 20.1 224 482-716 172-398 (460)
126 PF12662 cEGF: Complement Clr- 96.3 0.0034 7.4E-08 38.5 2.1 23 449-472 1-23 (24)
127 PF12947 EGF_3: EGF domain; I 96.2 0.0017 3.7E-08 44.4 0.8 31 395-427 4-36 (36)
128 KOG2397|consensus 96.2 0.0043 9.3E-08 66.7 4.0 70 57-128 42-114 (480)
129 PF13449 Phytase-like: Esteras 96.2 0.29 6.3E-06 52.4 18.1 116 591-707 86-251 (326)
130 PLN00181 protein SPA1-RELATED; 96.2 2.4 5.3E-05 51.3 28.1 161 502-666 483-650 (793)
131 PF13449 Phytase-like: Esteras 96.1 1.2 2.7E-05 47.5 22.6 117 548-666 86-253 (326)
132 COG0823 TolB Periplasmic compo 96.1 0.54 1.2E-05 52.0 19.8 147 569-718 218-369 (425)
133 KOG0318|consensus 96.0 2.5 5.5E-05 46.3 23.5 194 501-705 319-515 (603)
134 KOG3509|consensus 95.9 0.054 1.2E-06 64.1 11.6 96 238-333 2-104 (964)
135 KOG0285|consensus 95.9 0.39 8.4E-06 49.9 16.1 157 501-663 150-306 (460)
136 TIGR03032 conserved hypothetic 95.8 1.6 3.5E-05 45.3 20.3 162 544-716 46-240 (335)
137 KOG0266|consensus 95.8 4.1 8.8E-05 45.8 26.0 158 502-665 203-365 (456)
138 COG4247 Phy 3-phytase (myo-ino 95.8 1.5 3.3E-05 43.7 19.2 109 544-656 150-270 (364)
139 cd01475 vWA_Matrilin VWA_Matri 95.8 0.0061 1.3E-07 61.5 3.0 41 386-426 183-224 (224)
140 KOG0994|consensus 95.8 0.076 1.7E-06 62.3 11.6 64 200-269 884-954 (1758)
141 PF06433 Me-amine-dh_H: Methyl 95.7 1.9 4.2E-05 45.5 20.9 174 482-662 117-318 (342)
142 PRK13616 lipoprotein LpqB; Pro 95.7 2.3 4.9E-05 49.3 23.7 187 504-705 351-565 (591)
143 PTZ00421 coronin; Provisional 95.5 5.8 0.00013 45.0 29.8 209 501-715 124-338 (493)
144 TIGR03300 assembly_YfgL outer 95.4 5.2 0.00011 43.6 25.5 63 645-713 241-303 (377)
145 cd01475 vWA_Matrilin VWA_Matri 95.4 0.013 2.8E-07 59.2 3.5 43 423-465 180-223 (224)
146 smart00179 EGF_CA Calcium-bind 95.3 0.017 3.6E-07 40.2 3.0 31 429-459 1-33 (39)
147 PRK02888 nitrous-oxide reducta 95.3 1.4 2.9E-05 50.4 19.2 134 546-682 320-491 (635)
148 PF13360 PQQ_2: PQQ-like domai 95.2 2.3 5E-05 42.7 19.7 145 557-712 35-196 (238)
149 KOG2397|consensus 95.2 0.018 4E-07 62.0 4.1 69 97-168 43-115 (480)
150 KOG0315|consensus 95.2 3.8 8.3E-05 40.9 23.0 233 476-717 54-298 (311)
151 PRK11138 outer membrane biogen 95.2 3.5 7.6E-05 45.3 22.2 105 601-715 256-361 (394)
152 PF02897 Peptidase_S9_N: Proly 95.0 4.2 9.2E-05 45.0 22.6 221 484-712 151-409 (414)
153 COG3823 Glutamine cyclotransfe 95.0 1.8 3.8E-05 42.1 16.2 173 483-665 68-260 (262)
154 KOG0279|consensus 94.9 4.9 0.00011 40.8 23.2 206 505-715 18-230 (315)
155 PF00930 DPPIV_N: Dipeptidyl p 94.9 2.3 4.9E-05 46.1 19.4 93 593-688 238-337 (353)
156 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.9 1.2 2.5E-05 51.1 17.7 42 684-726 468-510 (527)
157 smart00181 EGF Epidermal growt 94.8 0.025 5.3E-07 38.4 2.5 24 397-420 6-30 (35)
158 PF14583 Pectate_lyase22: Olig 94.7 2.5 5.4E-05 45.5 18.4 154 471-628 45-231 (386)
159 KOG4649|consensus 94.7 0.91 2E-05 45.4 13.8 139 547-714 31-172 (354)
160 PTZ00420 coronin; Provisional 94.4 12 0.00026 43.1 28.1 120 501-623 73-199 (568)
161 KOG4328|consensus 94.3 1.5 3.2E-05 47.2 15.3 160 501-662 185-353 (498)
162 PF14583 Pectate_lyase22: Olig 94.3 0.38 8.2E-06 51.6 11.1 124 603-728 50-197 (386)
163 cd00054 EGF_CA Calcium-binding 94.2 0.047 1E-06 37.4 3.0 30 389-419 2-33 (38)
164 KOG0286|consensus 94.2 7.5 0.00016 39.7 26.7 156 559-717 156-313 (343)
165 KOG0266|consensus 94.1 12 0.00027 41.9 24.8 206 503-715 160-372 (456)
166 PRK11138 outer membrane biogen 94.1 8.7 0.00019 42.2 22.1 62 645-712 256-317 (394)
167 PF01731 Arylesterase: Arylest 94.0 0.13 2.8E-06 43.0 5.6 35 629-663 49-83 (86)
168 KOG3509|consensus 94.0 0.04 8.7E-07 65.1 3.5 101 66-168 2-109 (964)
169 cd00216 PQQ_DH Dehydrogenases 93.9 9.7 0.00021 43.2 22.5 33 683-716 401-433 (488)
170 PLN00181 protein SPA1-RELATED; 93.9 20 0.00043 43.5 29.4 157 503-664 533-690 (793)
171 KOG0293|consensus 93.8 5 0.00011 42.8 17.8 210 500-717 267-480 (519)
172 TIGR03300 assembly_YfgL outer 93.7 12 0.00027 40.6 27.3 107 601-716 241-347 (377)
173 PF02897 Peptidase_S9_N: Proly 93.6 14 0.0003 40.8 24.8 202 507-715 128-365 (414)
174 KOG4378|consensus 93.5 3.2 7E-05 45.2 16.0 186 514-707 89-280 (673)
175 PTZ00420 coronin; Provisional 93.5 18 0.00039 41.7 27.3 199 501-708 124-334 (568)
176 PF00930 DPPIV_N: Dipeptidyl p 93.4 14 0.0003 40.0 21.8 76 643-718 245-326 (353)
177 KOG1274|consensus 93.3 21 0.00046 42.0 23.3 159 504-670 58-224 (933)
178 KOG2139|consensus 93.2 3.6 7.8E-05 43.2 15.3 151 512-666 160-313 (445)
179 cd00054 EGF_CA Calcium-binding 93.2 0.089 1.9E-06 36.0 2.8 31 430-460 2-34 (38)
180 KOG4441|consensus 93.2 8.2 0.00018 44.6 20.4 181 505-696 325-530 (571)
181 KOG2106|consensus 93.2 16 0.00034 40.2 22.7 165 540-715 323-497 (626)
182 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.1 20 0.00043 41.1 23.6 75 638-712 238-338 (527)
183 PF14339 DUF4394: Domain of un 93.0 5.5 0.00012 39.9 16.1 34 502-536 26-59 (236)
184 KOG0272|consensus 93.0 4.4 9.5E-05 43.3 16.0 214 496-717 211-428 (459)
185 PF05787 DUF839: Bacterial pro 92.9 1.1 2.4E-05 51.0 12.5 63 545-608 348-453 (524)
186 KOG1407|consensus 92.6 13 0.00027 37.6 21.5 178 480-665 84-262 (313)
187 KOG0272|consensus 92.6 4.2 9E-05 43.5 15.0 182 497-688 256-440 (459)
188 PF12947 EGF_3: EGF domain; I 92.5 0.091 2E-06 36.0 2.0 26 437-462 6-33 (36)
189 KOG0289|consensus 92.5 18 0.00039 39.0 19.5 143 569-716 283-428 (506)
190 smart00181 EGF Epidermal growt 92.4 0.13 2.8E-06 34.7 2.8 25 437-461 6-31 (35)
191 KOG0310|consensus 92.3 20 0.00043 39.2 21.3 174 505-687 113-288 (487)
192 KOG0650|consensus 92.2 6.9 0.00015 43.7 16.7 136 589-728 566-722 (733)
193 PF02191 OLF: Olfactomedin-lik 92.1 11 0.00023 38.6 17.4 142 514-659 78-244 (250)
194 KOG0308|consensus 92.0 17 0.00036 41.2 19.5 191 503-703 118-323 (735)
195 KOG0646|consensus 91.9 16 0.00034 39.7 18.6 201 505-713 84-313 (476)
196 cd00053 EGF Epidermal growth f 91.9 0.14 3E-06 34.4 2.4 20 401-420 12-31 (36)
197 PHA02713 hypothetical protein; 91.7 26 0.00057 40.4 22.2 186 514-711 303-537 (557)
198 KOG0270|consensus 91.6 11 0.00023 40.8 16.8 154 506-673 247-413 (463)
199 PF05787 DUF839: Bacterial pro 91.6 1.5 3.2E-05 49.9 11.5 65 501-566 348-454 (524)
200 COG1520 FOG: WD40-like repeat 91.5 23 0.00049 38.5 20.6 109 601-714 111-224 (370)
201 KOG0994|consensus 91.3 1.4 3.1E-05 52.3 10.9 70 346-428 933-1017(1758)
202 COG4247 Phy 3-phytase (myo-ino 91.1 19 0.0004 36.3 18.6 98 565-663 120-233 (364)
203 KOG0318|consensus 91.0 29 0.00063 38.4 26.1 194 504-705 192-390 (603)
204 PF00008 EGF: EGF-like domain 90.7 0.13 2.8E-06 34.3 1.2 18 402-419 11-29 (32)
205 COG1520 FOG: WD40-like repeat 90.7 26 0.00055 38.1 20.0 141 514-666 68-220 (370)
206 KOG0296|consensus 90.7 25 0.00054 37.2 19.4 173 547-724 65-237 (399)
207 PF00008 EGF: EGF-like domain 90.6 0.26 5.7E-06 32.8 2.6 24 438-461 5-31 (32)
208 smart00284 OLF Olfactomedin-li 90.5 18 0.00038 37.0 16.8 138 514-654 83-244 (255)
209 KOG0276|consensus 90.5 36 0.00077 38.6 20.6 156 503-663 14-170 (794)
210 KOG0268|consensus 90.5 5.2 0.00011 42.0 12.9 153 545-705 186-345 (433)
211 KOG0263|consensus 90.4 33 0.00071 39.7 20.2 199 498-705 447-647 (707)
212 KOG4378|consensus 90.1 19 0.0004 39.6 17.0 159 503-667 122-283 (673)
213 cd00053 EGF Epidermal growth f 90.0 0.32 6.9E-06 32.5 2.8 25 437-461 6-32 (36)
214 COG3823 Glutamine cyclotransfe 89.9 21 0.00045 35.0 16.1 153 550-716 49-213 (262)
215 KOG0281|consensus 89.8 1.2 2.5E-05 46.2 7.7 150 552-717 241-398 (499)
216 PF01731 Arylesterase: Arylest 89.7 0.71 1.5E-05 38.6 5.1 33 544-576 51-83 (86)
217 KOG0273|consensus 89.7 30 0.00065 37.8 18.2 155 502-665 235-392 (524)
218 PF07433 DUF1513: Protein of u 89.5 30 0.00065 36.3 21.0 159 555-716 59-256 (305)
219 KOG2111|consensus 89.5 26 0.00057 36.3 16.8 140 557-715 74-220 (346)
220 PRK13616 lipoprotein LpqB; Pro 89.4 39 0.00084 39.3 20.7 156 547-714 350-533 (591)
221 TIGR02276 beta_rpt_yvtn 40-res 89.3 1.6 3.4E-05 30.5 6.1 41 557-598 2-42 (42)
222 KOG2048|consensus 89.3 44 0.00095 38.2 19.8 194 468-665 387-602 (691)
223 KOG0772|consensus 89.2 30 0.00065 38.2 17.9 160 506-672 272-464 (641)
224 KOG0319|consensus 89.2 17 0.00038 41.7 16.7 179 480-663 37-221 (775)
225 KOG3914|consensus 89.1 10 0.00022 40.4 14.1 153 557-715 73-231 (390)
226 KOG1274|consensus 89.1 36 0.00077 40.3 19.5 152 505-665 16-169 (933)
227 PF02191 OLF: Olfactomedin-lik 88.7 30 0.00066 35.3 21.4 178 513-698 29-240 (250)
228 KOG0270|consensus 88.3 37 0.0008 36.8 17.6 173 485-662 268-447 (463)
229 PF07433 DUF1513: Protein of u 87.3 41 0.00089 35.3 21.4 229 476-710 19-288 (305)
230 KOG1273|consensus 86.7 43 0.00094 34.8 17.8 207 502-718 65-291 (405)
231 PF06247 Plasmod_Pvs28: Plasmo 86.6 0.16 3.5E-06 48.0 -0.7 86 375-464 73-165 (197)
232 PF08662 eIF2A: Eukaryotic tra 86.4 34 0.00074 33.4 19.4 121 526-652 40-162 (194)
233 KOG0268|consensus 86.3 17 0.00037 38.4 13.5 170 483-665 89-260 (433)
234 PF10647 Gmad1: Lipoprotein Lp 86.2 43 0.00093 34.3 23.3 202 504-717 25-245 (253)
235 KOG0310|consensus 86.1 23 0.00049 38.8 14.8 149 558-711 79-229 (487)
236 KOG4283|consensus 86.0 45 0.00097 34.3 17.3 210 501-712 42-281 (397)
237 KOG1539|consensus 85.7 69 0.0015 37.6 19.0 158 502-665 448-607 (910)
238 KOG0282|consensus 85.4 16 0.00034 39.9 13.2 193 505-704 261-469 (503)
239 PF06247 Plasmod_Pvs28: Plasmo 85.1 0.99 2.1E-05 42.9 3.7 59 404-463 14-83 (197)
240 TIGR02276 beta_rpt_yvtn 40-res 84.9 3.9 8.5E-05 28.5 6.1 40 644-686 2-41 (42)
241 KOG0276|consensus 84.7 78 0.0017 36.0 20.8 125 472-597 65-191 (794)
242 KOG4441|consensus 84.1 69 0.0015 37.2 19.0 154 551-710 327-502 (571)
243 KOG0303|consensus 83.7 53 0.0011 35.2 15.8 161 501-667 130-297 (472)
244 PRK10115 protease 2; Provision 83.2 1.1E+02 0.0023 36.5 24.4 194 505-706 129-345 (686)
245 KOG0286|consensus 83.2 60 0.0013 33.5 18.1 136 523-662 164-301 (343)
246 KOG0281|consensus 83.1 8.4 0.00018 40.2 9.6 150 501-665 236-389 (499)
247 KOG2111|consensus 83.0 63 0.0014 33.7 21.0 145 558-706 104-255 (346)
248 KOG0308|consensus 83.0 22 0.00047 40.4 13.4 152 504-663 173-326 (735)
249 KOG2106|consensus 83.0 82 0.0018 34.9 20.1 68 502-575 329-396 (626)
250 PF09910 DUF2139: Uncharacteri 82.8 27 0.00059 36.1 12.9 82 568-656 19-100 (339)
251 KOG0274|consensus 81.8 1E+02 0.0023 35.3 22.6 206 498-717 245-451 (537)
252 PF09064 Tme5_EGF_like: Thromb 81.8 1.6 3.5E-05 29.0 2.6 24 398-422 7-30 (34)
253 KOG0263|consensus 81.5 79 0.0017 36.8 17.3 175 483-664 473-649 (707)
254 KOG2096|consensus 81.3 73 0.0016 33.2 19.5 207 502-712 132-365 (420)
255 KOG0277|consensus 81.3 65 0.0014 32.6 17.9 154 504-663 62-220 (311)
256 KOG1407|consensus 81.2 67 0.0014 32.7 18.6 200 504-716 66-270 (313)
257 cd00216 PQQ_DH Dehydrogenases 80.8 1.1E+02 0.0023 34.8 23.2 14 639-652 222-235 (488)
258 TIGR03074 PQQ_membr_DH membran 80.7 1.1E+02 0.0024 36.7 19.3 20 698-717 413-432 (764)
259 TIGR02171 Fb_sc_TIGR02171 Fibr 79.6 56 0.0012 39.2 15.9 87 483-569 329-423 (912)
260 PF05935 Arylsulfotrans: Aryls 79.3 85 0.0018 35.5 17.2 156 558-718 113-312 (477)
261 KOG0645|consensus 78.9 80 0.0017 32.3 23.8 163 502-667 61-232 (312)
262 PF08662 eIF2A: Eukaryotic tra 78.8 68 0.0015 31.3 16.5 120 482-607 38-161 (194)
263 TIGR02171 Fb_sc_TIGR02171 Fibr 78.7 28 0.00062 41.6 13.1 96 514-611 319-422 (912)
264 PF12661 hEGF: Human growth fa 78.7 0.71 1.5E-05 24.0 0.1 12 202-213 1-12 (13)
265 KOG2048|consensus 78.3 1.3E+02 0.0029 34.5 20.4 159 500-664 380-548 (691)
266 KOG0640|consensus 76.9 49 0.0011 34.3 12.5 211 499-719 169-395 (430)
267 KOG2139|consensus 76.6 1.1E+02 0.0024 32.6 18.5 196 504-705 197-429 (445)
268 KOG4328|consensus 76.5 1.2E+02 0.0027 33.1 17.8 184 480-667 254-453 (498)
269 PRK10115 protease 2; Provision 76.4 1.7E+02 0.0038 34.8 25.9 180 484-671 154-353 (686)
270 KOG1645|consensus 75.5 1.2E+02 0.0027 32.7 16.0 55 480-534 213-267 (463)
271 smart00284 OLF Olfactomedin-li 75.4 1E+02 0.0022 31.6 20.6 147 550-704 77-249 (255)
272 KOG0269|consensus 73.9 58 0.0013 37.9 13.4 148 559-708 100-250 (839)
273 KOG0264|consensus 73.5 1.4E+02 0.0031 32.4 15.6 160 504-664 179-347 (422)
274 KOG3914|consensus 72.7 92 0.002 33.5 13.8 118 546-669 107-229 (390)
275 KOG0292|consensus 72.7 2.2E+02 0.0047 34.2 20.4 167 505-694 209-383 (1202)
276 PRK13684 Ycf48-like protein; P 71.9 1.5E+02 0.0032 31.8 23.0 198 505-715 92-295 (334)
277 KOG0294|consensus 71.9 1.3E+02 0.0029 31.4 21.3 152 502-665 43-198 (362)
278 PHA02713 hypothetical protein; 71.4 2E+02 0.0044 33.3 19.8 147 557-708 302-489 (557)
279 KOG3881|consensus 71.4 1.5E+02 0.0033 31.8 17.7 112 591-705 204-317 (412)
280 KOG1517|consensus 71.4 58 0.0013 39.4 13.0 175 508-687 1171-1360(1387)
281 KOG0292|consensus 71.2 59 0.0013 38.5 12.8 157 503-665 10-166 (1202)
282 KOG0282|consensus 70.8 56 0.0012 35.9 11.9 156 502-662 214-370 (503)
283 KOG3621|consensus 69.9 82 0.0018 36.4 13.4 116 590-714 125-252 (726)
284 COG3211 PhoX Predicted phospha 69.5 39 0.00084 38.2 10.6 23 545-567 415-437 (616)
285 KOG1226|consensus 69.2 31 0.00068 40.1 10.2 18 112-130 474-491 (783)
286 PF10647 Gmad1: Lipoprotein Lp 68.6 1.4E+02 0.0031 30.4 19.2 111 548-662 25-142 (253)
287 PF05694 SBP56: 56kDa selenium 68.4 29 0.00064 38.0 9.3 62 635-696 313-393 (461)
288 KOG0284|consensus 67.9 75 0.0016 34.3 11.8 102 504-608 140-241 (464)
289 KOG1036|consensus 67.5 1.6E+02 0.0035 30.6 15.7 99 550-653 181-294 (323)
290 KOG0275|consensus 67.2 1.4E+02 0.0031 31.0 13.3 105 612-717 360-477 (508)
291 KOG0295|consensus 67.0 1.8E+02 0.0039 31.0 17.1 226 482-716 129-373 (406)
292 KOG0288|consensus 66.0 2E+02 0.0044 31.2 15.3 81 636-717 344-427 (459)
293 KOG0306|consensus 65.2 2.8E+02 0.0061 32.6 17.9 151 503-662 509-662 (888)
294 KOG3567|consensus 65.2 2 4.3E-05 46.5 -0.2 35 631-666 464-498 (501)
295 KOG0301|consensus 64.9 2.5E+02 0.0054 32.6 15.8 79 500-585 138-216 (745)
296 KOG0645|consensus 63.9 1.8E+02 0.0039 29.9 24.7 156 502-661 14-177 (312)
297 KOG0269|consensus 63.8 1.3E+02 0.0029 35.2 13.6 123 501-625 132-254 (839)
298 KOG0271|consensus 63.5 2.2E+02 0.0047 30.7 14.5 159 551-717 120-286 (480)
299 PF14870 PSII_BNR: Photosynthe 63.5 2E+02 0.0044 30.3 23.4 190 504-703 105-300 (302)
300 KOG1036|consensus 63.3 2E+02 0.0042 30.1 20.1 98 476-578 27-125 (323)
301 KOG4649|consensus 63.2 1.8E+02 0.0039 29.7 23.3 26 594-621 140-165 (354)
302 KOG3621|consensus 63.2 1.4E+02 0.0031 34.6 13.6 59 548-608 126-187 (726)
303 KOG0288|consensus 63.1 2.3E+02 0.0049 30.8 14.5 124 483-608 322-450 (459)
304 KOG0283|consensus 63.1 3.1E+02 0.0067 32.3 19.0 88 509-600 374-462 (712)
305 PF05694 SBP56: 56kDa selenium 62.9 1.7E+02 0.0036 32.4 13.7 60 549-608 314-392 (461)
306 KOG2055|consensus 61.6 2.6E+02 0.0056 30.9 16.3 33 638-672 392-429 (514)
307 PF03178 CPSF_A: CPSF A subuni 60.4 1.9E+02 0.0041 30.5 14.0 106 592-705 91-202 (321)
308 KOG2055|consensus 60.2 2.7E+02 0.0059 30.7 20.1 196 502-704 213-414 (514)
309 KOG4532|consensus 59.2 2.2E+02 0.0047 29.3 15.0 175 474-652 129-321 (344)
310 KOG0299|consensus 57.8 2.9E+02 0.0064 30.4 18.4 211 495-717 135-366 (479)
311 KOG2321|consensus 57.8 2.7E+02 0.0058 31.7 14.2 68 549-620 136-204 (703)
312 KOG0296|consensus 57.3 2.7E+02 0.0059 29.8 23.6 197 502-705 64-271 (399)
313 KOG0316|consensus 57.2 2.2E+02 0.0047 28.7 16.9 63 645-713 154-219 (307)
314 KOG0264|consensus 56.6 3E+02 0.0065 30.1 18.4 103 564-667 195-306 (422)
315 KOG0649|consensus 56.4 2.3E+02 0.005 28.7 15.6 154 501-666 113-276 (325)
316 KOG0772|consensus 55.9 3.4E+02 0.0073 30.5 17.2 163 500-665 165-348 (641)
317 PF14517 Tachylectin: Tachylec 55.9 2.3E+02 0.0049 28.5 16.7 151 546-706 33-205 (229)
318 TIGR03074 PQQ_membr_DH membran 54.7 4.6E+02 0.0099 31.7 20.5 76 638-714 379-484 (764)
319 PRK13684 Ycf48-like protein; P 54.2 3E+02 0.0065 29.4 23.3 181 515-705 143-329 (334)
320 KOG4532|consensus 53.5 2.7E+02 0.0058 28.6 14.7 120 592-717 161-292 (344)
321 KOG1445|consensus 53.2 3E+02 0.0065 31.6 13.7 154 503-666 628-787 (1012)
322 KOG1334|consensus 52.8 1.4E+02 0.0031 33.0 11.0 62 547-608 233-300 (559)
323 KOG1524|consensus 52.8 3.5E+02 0.0075 30.6 13.9 106 495-608 138-246 (737)
324 PF04885 Stig1: Stigma-specifi 52.7 31 0.00067 31.6 5.3 53 79-147 76-133 (136)
325 KOG3545|consensus 52.4 1.9E+02 0.0042 29.3 11.2 144 557-705 76-244 (249)
326 PF08309 LVIVD: LVIVD repeat; 52.3 61 0.0013 23.0 5.6 35 680-715 3-37 (42)
327 KOG3881|consensus 52.2 1.1E+02 0.0024 32.8 9.9 89 516-605 217-306 (412)
328 KOG0271|consensus 52.0 3.4E+02 0.0073 29.3 15.4 96 502-600 115-211 (480)
329 KOG0294|consensus 51.7 3.1E+02 0.0067 28.8 22.3 210 482-705 62-279 (362)
330 KOG0650|consensus 51.7 52 0.0011 37.1 7.7 121 497-623 516-639 (733)
331 PF05935 Arylsulfotrans: Aryls 51.4 4.1E+02 0.0088 30.1 18.2 154 514-674 113-311 (477)
332 KOG0284|consensus 50.6 2.4E+02 0.0051 30.6 12.0 156 503-664 181-337 (464)
333 KOG0646|consensus 50.6 3.9E+02 0.0084 29.5 19.2 99 559-663 189-306 (476)
334 KOG2110|consensus 50.5 3.5E+02 0.0076 29.0 20.3 149 552-704 91-245 (391)
335 PF12946 EGF_MSP1_1: MSP1 EGF 49.3 10 0.00022 26.1 1.2 21 401-421 11-32 (37)
336 KOG1408|consensus 49.1 1.6E+02 0.0034 34.3 10.9 148 547-705 38-192 (1080)
337 COG3211 PhoX Predicted phospha 48.6 1.3E+02 0.0028 34.2 10.2 108 501-608 415-572 (616)
338 KOG1273|consensus 47.1 3.7E+02 0.008 28.3 19.7 111 504-618 108-223 (405)
339 KOG1587|consensus 47.1 5.1E+02 0.011 29.9 18.4 155 549-716 350-514 (555)
340 PF06739 SBBP: Beta-propeller 46.6 16 0.00035 25.2 2.0 19 634-653 13-31 (38)
341 KOG1334|consensus 46.6 1.2E+02 0.0027 33.5 9.4 65 502-566 232-301 (559)
342 KOG3545|consensus 46.3 2.5E+02 0.0055 28.4 11.0 137 514-653 77-237 (249)
343 KOG0283|consensus 45.9 5.7E+02 0.012 30.2 15.3 149 551-706 372-531 (712)
344 PF14870 PSII_BNR: Photosynthe 45.4 3.9E+02 0.0085 28.2 24.7 199 505-716 64-269 (302)
345 COG1770 PtrB Protease II [Amin 45.3 5.6E+02 0.012 29.9 22.2 200 505-713 131-354 (682)
346 KOG1272|consensus 45.3 63 0.0014 35.4 6.9 96 513-622 229-324 (545)
347 PF01011 PQQ: PQQ enzyme repea 44.1 71 0.0015 21.8 5.0 29 689-718 1-29 (38)
348 PHA02790 Kelch-like protein; P 43.5 5.3E+02 0.011 29.1 19.9 132 557-696 317-454 (480)
349 KOG1226|consensus 42.7 80 0.0017 37.0 7.7 14 202-215 479-492 (783)
350 KOG2280|consensus 42.5 4.1E+02 0.009 31.4 13.1 104 499-609 40-154 (829)
351 COG4222 Uncharacterized protei 41.5 4.7E+02 0.01 28.6 13.0 63 590-652 138-218 (391)
352 KOG0641|consensus 41.4 3.7E+02 0.008 26.7 18.3 168 491-665 172-350 (350)
353 PF08553 VID27: VID27 cytoplas 41.1 7.3E+02 0.016 30.0 19.9 55 637-696 581-638 (794)
354 KOG1836|consensus 40.6 31 0.00066 44.7 4.5 67 390-460 738-808 (1705)
355 KOG0277|consensus 40.0 4.3E+02 0.0092 27.0 17.9 32 638-669 152-185 (311)
356 PF14517 Tachylectin: Tachylec 39.6 4.1E+02 0.0089 26.7 15.9 146 507-662 38-204 (229)
357 KOG0321|consensus 39.6 6.6E+02 0.014 29.1 15.1 74 502-576 100-174 (720)
358 KOG2321|consensus 39.0 6.4E+02 0.014 28.8 18.7 92 569-666 116-207 (703)
359 PF03178 CPSF_A: CPSF A subuni 37.1 3.9E+02 0.0084 28.1 11.9 74 639-716 92-167 (321)
360 KOG0973|consensus 37.0 8.7E+02 0.019 29.8 19.1 142 549-697 132-283 (942)
361 smart00564 PQQ beta-propeller 36.7 87 0.0019 20.1 4.4 28 686-714 4-31 (33)
362 PF00780 CNH: CNH domain; Int 36.5 4.7E+02 0.01 26.5 26.1 114 590-717 139-265 (275)
363 PF04885 Stig1: Stigma-specifi 36.4 89 0.0019 28.6 5.6 26 125-151 82-109 (136)
364 KOG0973|consensus 36.3 8.9E+02 0.019 29.7 18.1 77 499-578 126-202 (942)
365 TIGR03547 muta_rot_YjhT mutatr 36.2 5.5E+02 0.012 27.2 20.4 38 569-608 168-207 (346)
366 COG3361 Uncharacterized conser 35.7 90 0.0019 30.0 5.6 72 590-672 41-112 (240)
367 KOG1517|consensus 35.3 7.1E+02 0.015 30.8 13.8 117 550-668 1167-1291(1387)
368 KOG0275|consensus 35.0 5.6E+02 0.012 26.9 13.0 76 566-644 412-490 (508)
369 KOG0274|consensus 34.5 7.7E+02 0.017 28.4 24.4 179 523-713 309-488 (537)
370 KOG0649|consensus 33.2 5.3E+02 0.012 26.2 18.0 111 589-702 114-232 (325)
371 PRK14131 N-acetylneuraminic ac 32.7 6.7E+02 0.014 27.1 19.7 183 507-694 33-285 (376)
372 KOG0319|consensus 32.7 8.9E+02 0.019 28.6 22.7 218 474-702 294-530 (775)
373 PF11134 Phage_stabilise: Phag 32.5 7.3E+02 0.016 27.5 18.8 191 508-706 139-362 (469)
374 COG3292 Predicted periplasmic 32.5 8.2E+02 0.018 28.1 13.7 202 503-715 165-370 (671)
375 KOG1539|consensus 32.5 9.5E+02 0.021 28.8 22.3 191 508-708 39-243 (910)
376 KOG0303|consensus 32.3 6.9E+02 0.015 27.2 15.2 38 675-712 248-289 (472)
377 KOG1034|consensus 32.0 6.5E+02 0.014 26.7 16.3 105 473-577 104-211 (385)
378 KOG0278|consensus 31.9 5.7E+02 0.012 26.1 15.5 197 505-710 103-300 (334)
379 KOG1524|consensus 31.8 6.1E+02 0.013 28.7 11.8 91 474-567 76-166 (737)
380 TIGR03547 muta_rot_YjhT mutatr 31.7 6.5E+02 0.014 26.7 20.1 93 514-608 17-125 (346)
381 KOG0640|consensus 31.3 6.4E+02 0.014 26.5 16.0 111 546-662 172-289 (430)
382 KOG0307|consensus 31.0 2E+02 0.0043 35.2 8.7 164 547-716 117-293 (1049)
383 PHA03098 kelch-like protein; P 30.9 8.4E+02 0.018 27.7 21.6 188 514-709 294-513 (534)
384 PF05262 Borrelia_P83: Borreli 30.7 3.4E+02 0.0073 30.7 10.1 73 652-725 414-486 (489)
385 COG3419 PilY1 Tfp pilus assemb 30.5 1.1E+03 0.023 29.2 14.5 21 646-667 773-793 (1036)
386 PF13570 PQQ_3: PQQ-like domai 30.5 75 0.0016 21.8 3.4 24 683-707 16-39 (40)
387 cd00041 CUB CUB domain; extrac 30.3 40 0.00087 28.8 2.4 38 3-40 73-112 (113)
388 KOG0307|consensus 30.3 3.9E+02 0.0085 32.8 11.0 161 502-665 116-285 (1049)
389 PF14251 DUF4346: Domain of un 29.9 1.2E+02 0.0025 26.9 4.9 51 507-568 11-61 (119)
390 KOG0295|consensus 29.6 7.4E+02 0.016 26.7 17.5 185 505-695 196-393 (406)
391 PF12920 TcdA_TcdB_pore: TcdA/ 29.3 6.6E+02 0.014 29.6 12.4 20 514-533 467-486 (663)
392 PF09910 DUF2139: Uncharacteri 29.2 6.9E+02 0.015 26.2 22.8 59 571-629 80-147 (339)
393 KOG2394|consensus 28.9 9E+02 0.02 27.5 14.3 30 503-532 220-249 (636)
394 KOG2110|consensus 28.2 7.8E+02 0.017 26.5 21.5 150 504-662 89-246 (391)
395 PF13970 DUF4221: Domain of un 28.0 7.5E+02 0.016 26.2 14.5 71 514-585 55-131 (333)
396 TIGR03548 mutarot_permut cycli 27.8 7.3E+02 0.016 26.0 22.4 93 514-608 72-178 (323)
397 KOG1310|consensus 27.8 2.9E+02 0.0064 31.2 8.7 115 504-620 52-177 (758)
398 KOG0643|consensus 27.6 7E+02 0.015 25.8 19.5 166 489-662 39-218 (327)
399 KOG2066|consensus 27.6 1.1E+03 0.024 28.1 17.0 137 563-705 87-233 (846)
400 COG4880 Secreted protein conta 27.2 8.8E+02 0.019 26.8 15.8 36 560-609 161-196 (603)
401 PF14339 DUF4394: Domain of un 27.1 6.7E+02 0.015 25.4 18.2 57 479-536 44-106 (236)
402 PF01826 TIL: Trypsin Inhibito 26.6 38 0.00083 25.3 1.4 21 412-433 35-55 (55)
403 KOG2314|consensus 26.5 6.7E+02 0.014 28.6 11.1 143 484-633 428-576 (698)
404 KOG1409|consensus 26.4 8.2E+02 0.018 26.2 18.1 159 501-667 67-230 (404)
405 KOG4714|consensus 25.7 6.5E+02 0.014 25.9 10.0 75 546-622 179-255 (319)
406 PF00431 CUB: CUB domain CUB d 25.6 49 0.0011 28.2 2.1 36 4-39 73-110 (110)
407 PF07974 EGF_2: EGF-like domai 25.5 73 0.0016 21.1 2.4 26 100-130 7-32 (32)
408 KOG0313|consensus 25.5 8.9E+02 0.019 26.2 14.2 147 553-714 265-412 (423)
409 KOG0301|consensus 25.3 1.1E+03 0.025 27.5 15.5 101 594-704 145-246 (745)
410 KOG0918|consensus 25.1 3E+02 0.0065 29.9 7.9 29 551-579 316-344 (476)
411 PF11134 Phage_stabilise: Phag 24.8 9.8E+02 0.021 26.5 13.9 64 639-702 139-206 (469)
412 KOG4283|consensus 24.7 8.2E+02 0.018 25.6 17.9 98 509-608 108-207 (397)
413 KOG4497|consensus 24.5 4.7E+02 0.01 27.7 9.0 84 523-608 69-152 (447)
414 PF04841 Vps16_N: Vps16, N-ter 24.1 9.9E+02 0.021 26.3 21.3 47 485-533 63-109 (410)
415 KOG0309|consensus 23.3 1.1E+03 0.023 28.2 12.1 33 632-664 200-232 (1081)
416 KOG0306|consensus 23.1 1.3E+03 0.029 27.4 21.5 177 519-704 428-619 (888)
417 PF15416 DUF4623: Domain of un 23.1 9.4E+02 0.02 25.7 17.2 65 514-579 193-273 (442)
418 PF14251 DUF4346: Domain of un 23.0 1.9E+02 0.0042 25.6 5.1 51 549-609 9-59 (119)
419 KOG4292|consensus 22.7 81 0.0018 34.7 3.4 73 8-86 367-441 (454)
420 PF08268 FBA_3: F-box associat 22.7 4.1E+02 0.0089 23.6 7.7 57 638-697 1-63 (129)
421 smart00042 CUB Domain first fo 22.5 76 0.0016 26.7 2.7 36 4-39 64-102 (102)
422 KOG0293|consensus 22.0 1.1E+03 0.023 26.0 17.2 126 570-702 292-420 (519)
423 KOG3567|consensus 21.8 1.2E+02 0.0026 33.5 4.4 54 525-579 445-498 (501)
424 PHA02790 Kelch-like protein; P 21.7 1.2E+03 0.025 26.3 17.7 125 514-653 318-454 (480)
425 smart00051 DSL delta serrate l 21.5 1.4E+02 0.0031 23.3 3.7 18 202-219 18-35 (63)
426 KOG1897|consensus 21.4 1.6E+03 0.034 27.7 16.3 131 568-705 806-940 (1096)
427 KOG4227|consensus 21.3 1.1E+03 0.023 25.7 11.7 72 503-577 106-179 (609)
428 KOG1538|consensus 21.2 1.4E+03 0.03 26.9 14.3 59 652-713 150-216 (1081)
429 KOG0290|consensus 20.6 9.9E+02 0.021 25.0 14.7 53 491-543 185-237 (364)
No 1
>KOG1214|consensus
Probab=100.00 E-value=3.5e-50 Score=430.88 Aligned_cols=332 Identities=32% Similarity=0.659 Sum_probs=272.6
Q ss_pred CCCCCCCCCCCCc-cccccccCCCCC--cCccccCCCcceeecCCCcEecCCCCccccc----cCcC-------------
Q psy8875 375 DCPLMQDEDPTKC-GVDECAKDNGGC--LHKCVDLPVGYMCECNEGYKLSSNRHTCIDI----DECE------------- 434 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~~~eC~~~~~~C--~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~----~eC~------------- 434 (734)
.|.+||.+++..| ++|||.. ..| .+.|.|++++|.|.|.+||+. |+..|+.. ..|.
T Consensus 812 ~CLPGfsGDG~~c~dvDeC~p--srChp~A~CyntpgsfsC~C~pGy~G--DGf~CVP~~~~~T~C~~er~hpl~chg~t 887 (1289)
T KOG1214|consen 812 ACLPGFSGDGHQCTDVDECSP--SRCHPAATCYNTPGSFSCRCQPGYYG--DGFQCVPDTSSLTPCEQERFHPLQCHGST 887 (1289)
T ss_pred eecCCccCCccccccccccCc--cccCCCceEecCCCcceeecccCccC--CCceecCCCccCCccccccccceeecccc
Confidence 8899998888777 9999984 466 458999999999999999987 56666421 1111
Q ss_pred ------------------CCC---------------Cccc--ceecc--CC-ceEEecCCC--eeeC-----CCCCcccc
Q psy8875 435 ------------------TPG---------------SCSQ--ICLNE--KG-GFKCECVAG--YIKD-----PHHPTQCK 469 (734)
Q Consensus 435 ------------------~~~---------------~C~~--~C~n~--~g-~~~C~C~~g--y~~~-----~~~~t~C~ 469 (734)
.++ .|+. .|..+ .| ++.|.|..+ -... +...-.|.
T Consensus 888 ~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gtr~~pg~tp~Ci 967 (1289)
T KOG1214|consen 888 GFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGTRSQPGTTPACI 967 (1289)
T ss_pred ceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCccccccCCCCCCCcc
Confidence 000 1211 22222 23 377777652 2111 10000122
Q ss_pred cc------------------cccceeeeeeccceEEeecCCCceEE------EecCCcceEEEeeeccCCeEEEEEeCCC
Q psy8875 470 AA------------------EGHASLLFARKHDIRKISLDHHEMTA------IVNSTKSATAIDFVFRTGMIFWSDISEK 525 (734)
Q Consensus 470 ~~------------------~~~~~l~~~~~~~I~~i~l~~~~~~~------l~~~~~~~~~i~~d~~~~~lyw~d~~~~ 525 (734)
.. ..--+|||+....|.+..+++..+.. |+-...-|+|||||-++.+|||+|+...
T Consensus 968 ptvApp~v~np~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~ 1047 (1289)
T KOG1214|consen 968 PTVAPPMVRNPTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGR 1047 (1289)
T ss_pred CCCCCCcccCCCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCC
Confidence 11 11137999999999999999876644 3334567899999999999999999999
Q ss_pred cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEE
Q psy8875 526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMY 605 (734)
Q Consensus 526 ~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LY 605 (734)
.|.|+.|. |...+.++..+|..|+||||||++++|||||+...+|+++.|||+.+++|+...|.+|++|++|+.+|.||
T Consensus 1048 SI~rasL~-G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLY 1126 (1289)
T KOG1214|consen 1048 SISRASLE-GAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLY 1126 (1289)
T ss_pred cccccccc-CCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCcee
Confidence 99999999 66677777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEE
Q psy8875 606 WSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSI 684 (734)
Q Consensus 606 wtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl 684 (734)
||||. ++++|+++.|||+++++++.+++..||||++|++...|-|+|+++++++.+.++|..|++++. .|+.||+|
T Consensus 1127 wtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~---~LqYPF~i 1203 (1289)
T KOG1214|consen 1127 WTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN---NLQYPFSI 1203 (1289)
T ss_pred eccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhh---cccCceee
Confidence 99996 578999999999999999999999999999999999999999999999999999999999874 58999999
Q ss_pred EEECCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 685 STFEDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 685 ~v~~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
+-+++.+|||||+.++|..++++.++.+..
T Consensus 1204 tsy~~~fY~TDWk~n~vvsv~~~~~~~td~ 1233 (1289)
T KOG1214|consen 1204 TSYADHFYHTDWKRNGVVSVNKHSGQFTDE 1233 (1289)
T ss_pred eeccccceeeccccCceEEeeccccccccc
Confidence 999999999999999999999988876543
No 2
>KOG1215|consensus
Probab=100.00 E-value=4e-48 Score=465.12 Aligned_cols=573 Identities=37% Similarity=0.682 Sum_probs=469.8
Q ss_pred CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccccC--------------------------cccCCceeccCC
Q psy8875 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKR--------------------------ICGQEEFTCRSS 104 (734)
Q Consensus 51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~--------------------------~C~~~~~~C~~~ 104 (734)
..... ..+|.+.||++|+..|.+..+.|+...++|..+... +.....+-....
T Consensus 28 ~~~~~-~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~ 106 (877)
T KOG1215|consen 28 RKILE-KEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDS 106 (877)
T ss_pred eEEee-ccceeCCCcceecchhheeeeccccCCceEEeccCCccceeeeeeccceeeccchhhhhccCCCCcceeehhcC
Confidence 33444 789999999999999999999999999998766432 111111122221
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCcC-CCCCCCcccccCcCC--CCceEeCccccCCCCCCCCCCCCCCCCccCccccccCC
Q psy8875 105 PGECVPLTWMCDDNPDCSDGSDEK-SCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVN 181 (734)
Q Consensus 105 ~~~Ci~~~~~Cdg~~dC~dg~de~-~C~~~~C~~~~f~C~--~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~ 181 (734)
..-.....|.+.+...+.++.++. ++....|...+|+|. +++|||..|+||+..+|.+|+||.. |...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~--------~~~~- 177 (877)
T KOG1215|consen 107 HFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELN--------CAVR- 177 (877)
T ss_pred CCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhhc--------cccc-
Confidence 111334788889999999999995 444467888899999 8899999999999999999999988 5200
Q ss_pred CCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCC
Q psy8875 182 GHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261 (734)
Q Consensus 182 ~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C 261 (734)
. ..+. ...|+| |...++||+..+|.+++|+..+
T Consensus 178 ------------------~-----------------------~~~~-~~~~~~-----~~~~~~~d~~~~~~~~~d~~~~ 210 (877)
T KOG1215|consen 178 ------------------R-----------------------CEPR-GASLDC-----IVAIKVCDIQHDCADDYDESEG 210 (877)
T ss_pred ------------------c-----------------------cCcc-cccccc-----ceeeeecCcccccccccccccC
Confidence 0 0122 234555 8889999999999999999887
Q ss_pred C-CCCC---CCceecCCC-CeecCCcccCCCCCCCCCCCC--CCCCCCCCCCCceecCCCCccccccccccCCCCCCCC-
Q psy8875 262 H-ETCR---SDEFTCANG-NCIQRIWLCDGDDDCKDGSDE--KSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS- 333 (734)
Q Consensus 262 ~-~~C~---~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe--~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~- 333 (734)
. ..+. ...++|..+ +||...|.|||..||.+++|| .+|....|...++.|.+ +.|++..+.|+|..||+++
T Consensus 211 ~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~g~~d~pdg~ 289 (877)
T KOG1215|consen 211 RIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECAD-GDCSDRQKLCDGDLDCPDGL 289 (877)
T ss_pred cccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecC-CCCccceEEecCccCCCCcc
Confidence 5 2222 467888886 999999999999999999999 57877888888899977 8999999999999999888
Q ss_pred ---CCCCCCCCCCCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcc
Q psy8875 334 ---TCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGY 410 (734)
Q Consensus 334 ---~C~~~~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~ 410 (734)
.|.+...+ ...|.| . +++ |...++|++ + ..+.+++|......+.+.+.+...+.
T Consensus 290 de~~~~~~~~~--~~~~d~-------~--~~~-i~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~v~~ 346 (877)
T KOG1215|consen 290 DEDYCKKKLYW--SMNVDG-------S--GRR-ILLSKLCHG-------Y----WTDGLNECAERVLKCSHKCPDVSVGP 346 (877)
T ss_pred cccccccceee--eeeccc-------C--Cce-eeecccCcc-------c----cccccccchhhcccccCCCCccccCC
Confidence 34332111 234555 3 556 887777766 1 22456677777788999999999999
Q ss_pred eeecCCCcEecCCCCccccccCcCCCCCccccee-ccCCceEEecCCCeeeCCCCCccccccc-ccceeeeeeccceEEe
Q psy8875 411 MCECNEGYKLSSNRHTCIDIDECETPGSCSQICL-NEKGGFKCECVAGYIKDPHHPTQCKAAE-GHASLLFARKHDIRKI 488 (734)
Q Consensus 411 ~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~-n~~g~~~C~C~~gy~~~~~~~t~C~~~~-~~~~l~~~~~~~I~~i 488 (734)
.|.|..++.+.....+ ...+++..++.|+|+|. +.++.|.|.|..||.+.... |.+.. ..+++++++.+.|+++
T Consensus 347 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~---c~~~~~~~~~l~~s~~~~ir~~ 422 (877)
T KOG1215|consen 347 RCDCMGAKVLPLGART-DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK---CEASDQPEAFLLFSNRHDIRRI 422 (877)
T ss_pred cccCCccceecccccc-cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC---ceecCCCCcEEEEecCccceec
Confidence 9999999988666655 23344556799999999 56899999999999998765 76644 7889999999999999
Q ss_pred ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875 489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568 (734)
Q Consensus 489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~ 568 (734)
.++...+...+.....+.+++++..++.+||+|....+|.++..++..... +...+...|.+||+||+.+++||+|...
T Consensus 423 ~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~-~~~~g~~~~~~lavD~~~~~~y~tDe~~ 501 (877)
T KOG1215|consen 423 SLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE-LCGDGLCIPEGLAVDWIGDNIYWTDEGN 501 (877)
T ss_pred ccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccce-EeccCccccCcEEEEeccCCceecccCC
Confidence 999876666666668899999999999999999999999999998554444 5666888999999999999999999999
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeE
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~L 648 (734)
..|.+..++|..+.+++...+..|+.++|||..++|||+||+..++|.|+.|||..+.+++..++.+|+||++|...+++
T Consensus 502 ~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~ 581 (877)
T KOG1215|consen 502 CLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRL 581 (877)
T ss_pred ceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeeccee
Confidence 99999999999999999888899999999999999999999976699999999999999999999999999999999999
Q ss_pred EEEeCCCC-eEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875 649 YWVDAKLN-EISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711 (734)
Q Consensus 649 Yw~D~~~~-~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~ 711 (734)
||+|.... .|.+++++|++|+ ++. ...+.+|++|+++++++||+||....+.+..+..+..
T Consensus 582 yw~d~~~~~~i~~~~~~g~~r~-~~~-~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~ 643 (877)
T KOG1215|consen 582 YWADAKLDYTIESANMDGQNRR-VVD-SEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSD 643 (877)
T ss_pred EEEcccCCcceeeeecCCCceE-Eec-cccCCCceEEEEecceeEEeeccccceEeeecccCCc
Confidence 99999998 8999999999998 332 2568999999999999999999999999999988877
No 3
>KOG1214|consensus
Probab=100.00 E-value=1.2e-35 Score=319.40 Aligned_cols=316 Identities=25% Similarity=0.481 Sum_probs=236.8
Q ss_pred ccccC-CCcceeecCCCcEecCCCCccccccCcCCCCCccc--ceeccCCceEEecCCCeeeCCCC-------Ccccccc
Q psy8875 402 KCVDL-PVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--ICLNEKGGFKCECVAGYIKDPHH-------PTQCKAA 471 (734)
Q Consensus 402 ~C~~~-~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~--~C~n~~g~~~C~C~~gy~~~~~~-------~t~C~~~ 471 (734)
.|+.+ .+.|.|.|.+||.. |+..|.++|||. +..|.+ .|.|++|+|.|.|.+||.++... .|.|...
T Consensus 800 ~c~~hGgs~y~C~CLPGfsG--DG~~c~dvDeC~-psrChp~A~CyntpgsfsC~C~pGy~GDGf~CVP~~~~~T~C~~e 876 (1289)
T KOG1214|consen 800 RCVHHGGSTYSCACLPGFSG--DGHQCTDVDECS-PSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCVPDTSSLTPCEQE 876 (1289)
T ss_pred EEEecCCceEEEeecCCccC--CccccccccccC-ccccCCCceEecCCCcceeecccCccCCCceecCCCccCCccccc
Confidence 45555 45799999999976 899999999998 566754 89999999999999999987431 1223222
Q ss_pred cccceeeeeeccceEEee-----------------------------------------------------cCCCceEEE
Q psy8875 472 EGHASLLFARKHDIRKIS-----------------------------------------------------LDHHEMTAI 498 (734)
Q Consensus 472 ~~~~~l~~~~~~~I~~i~-----------------------------------------------------l~~~~~~~l 498 (734)
..+|+.--.+...++.++ -+|.+++..
T Consensus 877 r~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gt 956 (1289)
T KOG1214|consen 877 RFHPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGT 956 (1289)
T ss_pred cccceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCcccc
Confidence 112222111121222222 222221111
Q ss_pred e------------------cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE----EEEeCCCCCccceeeec
Q psy8875 499 V------------------NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT----VVIEEDKTIADGLAVDW 556 (734)
Q Consensus 499 ~------------------~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~----~~~~~~~~~p~glAvD~ 556 (734)
. .+...+-++.-.....+|.++. .++|.+..+++...++ .++.-.-..|.||++|-
T Consensus 957 r~~pg~tp~CiptvApp~v~np~~~~~v~p~~~gt~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC 1034 (1289)
T KOG1214|consen 957 RSQPGTTPACIPTVAPPMVRNPTPRPDVTPPSVGTFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDC 1034 (1289)
T ss_pred ccCCCCCCCccCCCCCCcccCCCCCCCCcCCCCcceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeeccc
Confidence 0 0001111111122344555553 5678888888543322 22222345688999999
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
+.++|||||.....|.+++|.|...++++...|..|.|||||+.++.|||+|. ...+|+++.|||+.|++|+.++|..|
T Consensus 1035 ~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS-~lD~IevA~LdG~~rkvLf~tdLVNP 1113 (1289)
T KOG1214|consen 1035 RERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDS-VLDKIEVALLDGSERKVLFYTDLVNP 1113 (1289)
T ss_pred ccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecc-ccchhheeecCCceeeEEEeecccCc
Confidence 99999999999999999999999999999999999999999999999999995 46899999999999999999999999
Q ss_pred eeEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCce
Q psy8875 637 NGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
++|++|+..+.|||+||. +.+|++.+|||++|++++.. .+.-|.||++ +...|-|.|++++++.-+++ +|..+
T Consensus 1114 R~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~--DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p-~g~gR 1190 (1289)
T KOG1214|consen 1114 RAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT--DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLP-DGTGR 1190 (1289)
T ss_pred ceEEeecccCceeeccccccCCcceeeccCCccceEEeec--ccCCCCCceeCcccceeeEEecCCcceeEecC-CCCcc
Confidence 999999999999999985 45899999999999999974 4777999988 78999999999999988865 67777
Q ss_pred EEEecccccCCCccCC
Q psy8875 713 TAITGVHQTHEPLNSP 728 (734)
Q Consensus 713 ~~l~~~~~l~~P~~i~ 728 (734)
.++... |+-||+|.
T Consensus 1191 R~i~~~--LqYPF~it 1204 (1289)
T KOG1214|consen 1191 RVIQNN--LQYPFSIT 1204 (1289)
T ss_pred hhhhhc--ccCceeee
Confidence 776654 88999985
No 4
>KOG1215|consensus
Probab=100.00 E-value=1.7e-33 Score=338.56 Aligned_cols=508 Identities=29% Similarity=0.492 Sum_probs=368.5
Q ss_pred eecCcCccCCCCCCCCCCccc-ccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCC--cccccCcCC
Q psy8875 67 CIPSTWVCDGQNDCPDGVDEK-KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRT--CQASEFRCG 143 (734)
Q Consensus 67 Ci~~~~~cdg~~dC~dg~de~-~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~--C~~~~f~C~ 143 (734)
.+...|.+.+...+.+++++. ++....|...+|+|..++.+|||..|+||+..+|.||+||..|.... +....|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~- 188 (877)
T KOG1215|consen 110 LDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDC- 188 (877)
T ss_pred cceeEEecCCCCCCCCcccccCCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCcccccccc-
Confidence 444999999999999999995 44445677888999843479999999999999999999999996433 33345666
Q ss_pred CCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCC
Q psy8875 144 NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGS 223 (734)
Q Consensus 144 ~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~ 223 (734)
|...++||+..+|.+++|+.. +. .+.+..
T Consensus 189 ----~~~~~~~d~~~~~~~~~d~~~--------~~---------------------~~~~~~------------------ 217 (877)
T KOG1215|consen 189 ----IVAIKVCDIQHDCADDYDESE--------GR---------------------IYWTDD------------------ 217 (877)
T ss_pred ----ceeeeecCccccccccccccc--------Cc---------------------ccccCC------------------
Confidence 999999999999999999976 31 110000
Q ss_pred CCCCCCCceeeCC-CceecCcCCCCCCCCCCCCCCCC--CCC-CCCCCCceecCCCCeecCCcccCCCCCCCCCCCCCCC
Q psy8875 224 KPCRNSTMFRCTG-GMCIPSTWVCDGQNDCPDGVDEK--KCH-ETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299 (734)
Q Consensus 224 ~~C~~~~~~~C~~-g~Ci~~~~~Cdg~~dC~dg~de~--~C~-~~C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C 299 (734)
+ . ...++|.+ ++||..+|.|||..||.+++||. +|. ..|...++.|.++.|++..+.|+|..||++|+||.+|
T Consensus 218 -~-~-~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~ 294 (877)
T KOG1215|consen 218 -S-R-IEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDYC 294 (877)
T ss_pred -c-c-eeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCCCCccccccc
Confidence 0 1 36788877 59999999999999999999994 665 5788889999999999999999999999999999999
Q ss_pred CCCCCCCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCcccccccccccCCCCCCCCC
Q psy8875 300 QPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLM 379 (734)
Q Consensus 300 ~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g 379 (734)
....+....|.|.. ++ |...++|++...+..+.|.. ....+ .+.+.+ ..-....+|..+
T Consensus 295 ~~~~~~~~~~d~~~-~~-i~~~~~~~~~~~~~~~~~~~-------~~~~~----------~~~~~~--~~v~~~~~~~~~ 353 (877)
T KOG1215|consen 295 KKKLYWSMNVDGSG-RR-ILLSKLCHGYWTDGLNECAE-------RVLKC----------SHKCPD--VSVGPRCDCMGA 353 (877)
T ss_pred ccceeeeeecccCC-ce-eeecccCccccccccccchh-------hcccc----------cCCCCc--cccCCcccCCcc
Confidence 87666567788887 67 99888887532222222211 11111 011110 001111255555
Q ss_pred CCCCCCCc-cccccccCCCCCcCccc-cCCCcceeecCCCcEecCCCCccccccCcCCC------CCcccceeccCCceE
Q psy8875 380 QDEDPTKC-GVDECAKDNGGCLHKCV-DLPVGYMCECNEGYKLSSNRHTCIDIDECETP------GSCSQICLNEKGGFK 451 (734)
Q Consensus 380 ~d~~~~~C-~~~eC~~~~~~C~~~C~-~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~------~~C~~~C~n~~g~~~ 451 (734)
+......- +.+.|...++.|+|.|. +.+++|.|.|..||.+..++ |...+-.... ..+..+....
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~~----- 426 (877)
T KOG1215|consen 354 KVLPLGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLDC----- 426 (877)
T ss_pred ceecccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecccCC-----
Confidence 53221111 33566777899999999 46999999999999998666 5443211110 0111111111
Q ss_pred EecCCCeeeCCCCCccccccc---ccceeeeee--ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCC
Q psy8875 452 CECVAGYIKDPHHPTQCKAAE---GHASLLFAR--KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEK 525 (734)
Q Consensus 452 C~C~~gy~~~~~~~t~C~~~~---~~~~l~~~~--~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~ 525 (734)
. ...+..... +. -.+.+ ....+++++ ...|.+....+..... +..+.-.+.++++|+..+.+||+|....
T Consensus 427 -~-~~~~p~~~~-~~-~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~ 502 (877)
T KOG1215|consen 427 -S-DVSRPLEGI-KN-AVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNC 502 (877)
T ss_pred -C-cceEEccCC-cc-ceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCc
Confidence 1 001111100 00 00100 011444544 2346666666665555 3446778899999999999999999999
Q ss_pred cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE
Q psy8875 526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM 604 (734)
Q Consensus 526 ~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L 604 (734)
.|....++ ++.+.+++...+..|+.++||+..+.+||+|++ ..+|.++.++|..+.+++..++..|+||++|.....+
T Consensus 503 ~i~v~~~~-g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~ 581 (877)
T KOG1215|consen 503 LIEVADLD-GSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRL 581 (877)
T ss_pred eeEEEEcc-CCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeeccee
Confidence 99999988 555778887778999999999999999999998 4589999999999999998889999999999999999
Q ss_pred EEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 605 YWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 605 Ywtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
||.|......|.+++++|+.++++....+..|.++++ +.+++||+|+....+.+....
T Consensus 582 yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~--~~~~iyw~d~~~~~~~~~~~~ 639 (877)
T KOG1215|consen 582 YWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSV--FEDYIYWTDWSNRAISRAEKH 639 (877)
T ss_pred EEEcccCCcceeeeecCCCceEEeccccCCCceEEEE--ecceeEEeeccccceEeeecc
Confidence 9999765458999999999998666678888998887 799999999988877777644
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.81 E-value=3.2e-18 Score=175.97 Aligned_cols=212 Identities=25% Similarity=0.400 Sum_probs=160.4
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
+.++.|+++.+.|||+|...++|+++++.++ ..++ +. +..|.|++++...+.||+++.. .+.+.++.....+++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~-~~~~-~~--~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTG-EVEV-ID--LPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEE-EE--SSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCC-eEEE-Ee--cCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE
Confidence 5789999989999999999999999999844 3322 22 2239999999777999999974 455558776666665
Q ss_pred EcC-----CCCCceeEEEeCCCCeEEEEecCCC-------ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 585 VRS-----YLDEPRSLALNPIDGWMYWSDWGQN-------AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 585 ~~~-----~l~~P~~iavD~~~g~LYwtd~~~~-------~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
+.. .+..|+++++|+ .|.||+++.+.. ++|++.+.+|+ .+ ++...+..||||++++.++.||++|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~-~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VT-VVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EE-EEEEEESSEEEEEEETTSSEEEEEE
T ss_pred eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EE-EEecCcccccceEECCcchheeecc
Confidence 543 578999999998 578999986421 57999999944 33 3345689999999999999999999
Q ss_pred CCCCeEEEEecCCC-----ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCcc
Q psy8875 653 AKLNEISSCDYNGG-----NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN 726 (734)
Q Consensus 653 ~~~~~I~~~~~dG~-----~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~ 726 (734)
+..++|++++++.. ++++++........|.||+++ +++||++.+..++|+++++. |+.+..|... ..+|..
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~t~ 229 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRPTN 229 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSEEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCEEE
Confidence 99999999998743 345555433333469999994 79999999999999999986 8888877654 346665
Q ss_pred CC
Q psy8875 727 SP 728 (734)
Q Consensus 727 i~ 728 (734)
++
T Consensus 230 ~~ 231 (246)
T PF08450_consen 230 CA 231 (246)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.77 E-value=7.6e-17 Score=194.92 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=164.5
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-------------CCCCCccceeeeccCCcEEEEeC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-------------EDKTIADGLAVDWIYSHIYWTDA 566 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-------------~~~~~p~glAvD~~~~~lY~td~ 566 (734)
..+..|.+|++|...+.||++|..+++|++++++ |.....+.. ..+..|.|||+|..++.|||+|.
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence 4567788999998889999999999999999987 433222221 12567999999988888999999
Q ss_pred CCCeEEEEeCCCCceEEEEcC----------------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 567 HKNTIELANFEGTMRKVLVRS----------------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 567 ~~~~I~~~~ldG~~~~~l~~~----------------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
.+++|+++++.+...+++... .+..|.+|++|+.++.||+++.+ +++|++.+..+....++..
T Consensus 644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCCCeEEEEec
Confidence 999999999887766665421 15689999999999999999975 4788888875443332211
Q ss_pred --------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC-------------------CCC
Q psy8875 631 --------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS-------------------PQT 677 (734)
Q Consensus 631 --------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~-------------------~~~ 677 (734)
..+..|+||++++.+++||++|...++|.++++++.....+... ...
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 23568999999988889999999999999999876554433211 113
Q ss_pred CCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 678 LSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 678 ~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+.+|.+|++. ++.||++|+.+++|.+++..++...++.
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 5689999995 5789999999999999998777655544
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.76 E-value=4.2e-16 Score=188.49 Aligned_cols=233 Identities=13% Similarity=0.169 Sum_probs=175.7
Q ss_pred eeeeee--ccceEEeecCCCceEEEec--------------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVN--------------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT 539 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~--------------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~ 539 (734)
.+++++ .+.|+++++++.....+.. .+..|.+|++++..+.|||+|..+++|+++++.++. .+
T Consensus 581 ~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~ 659 (1057)
T PLN02919 581 RLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VR 659 (1057)
T ss_pred eEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EE
Confidence 355544 4678888887654333322 245799999998888999999999999999887433 33
Q ss_pred EEEeC----------------CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc--------------CCC
Q psy8875 540 VVIEE----------------DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR--------------SYL 589 (734)
Q Consensus 540 ~~~~~----------------~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~--------------~~l 589 (734)
++... .+..|.+|++|+.+++||+++..+++|++.++.+....++.. ..+
T Consensus 660 tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~ 739 (1057)
T PLN02919 660 TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSF 739 (1057)
T ss_pred EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccc
Confidence 33211 156799999998899999999999999999886554443321 135
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE---------------------cCCCCceeEEEecCCCeE
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV---------------------SDIKWPNGLTLDLVQRRL 648 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~---------------------~~l~~P~glavD~~~~~L 648 (734)
..|.||+++|..++||++|.+ +++|.+.++++....++.. ..+..|.||++| .++.|
T Consensus 740 ~~P~GIavspdG~~LYVADs~-n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~L 817 (1057)
T PLN02919 740 AQPSGISLSPDLKELYIADSE-SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQI 817 (1057)
T ss_pred cCccEEEEeCCCCEEEEEECC-CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcE
Confidence 789999999988899999975 4799999987544433321 124579999999 45679
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEcCC-----------CCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCc
Q psy8875 649 YWVDAKLNEISSCDYNGGNRRLVLYSP-----------QTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDN 711 (734)
Q Consensus 649 Yw~D~~~~~I~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~ 711 (734)
|++|+.+++|.+++.++....++.... ..+..|.||++ .+++||++|..+++|.+++..+++.
T Consensus 818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999999999999999887666654321 23568999999 4689999999999999999888765
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.62 E-value=1.6e-13 Score=141.03 Aligned_cols=210 Identities=21% Similarity=0.243 Sum_probs=151.8
Q ss_pred ceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe---C-CCCC
Q psy8875 475 ASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE---E-DKTI 548 (734)
Q Consensus 475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~---~-~~~~ 548 (734)
..|+|++ ...|+++++++.....+... .|.+++++...+.||+++.. .+..+++..+....++.. . .+..
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~ 87 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNR 87 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEESS--SEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEEEEEETTCSCTEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEecC--CCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEEeeccCCCcccCC
Confidence 3566665 57799999988766554332 39999999667999999854 344447775543333322 1 5678
Q ss_pred ccceeeeccCCcEEEEeCCC--------CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875 549 ADGLAVDWIYSHIYWTDAHK--------NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM 620 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~--------~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l 620 (734)
|..+++|+ .++||+++... ++|++.+.+++. +.+. ..+..|+||+++|....||+++.. ..+|++.++
T Consensus 88 ~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~~~~-~~~~~pNGi~~s~dg~~lyv~ds~-~~~i~~~~~ 163 (246)
T PF08450_consen 88 PNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-TVVA-DGLGFPNGIAFSPDGKTLYVADSF-NGRIWRFDL 163 (246)
T ss_dssp EEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSEE-EEEE-EEESSEEEEEEETTSSEEEEEETT-TTEEEEEEE
T ss_pred CceEEEcC-CCCEEEEecCCCccccccccceEEECCCCeE-EEEe-cCcccccceEECCcchheeecccc-cceeEEEec
Confidence 99999996 57799998763 569999999543 3333 568899999999998899999965 478999999
Q ss_pred CCCc-----eEEEEEcCC--CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCE
Q psy8875 621 DGSH-----RNMVIVSDI--KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDW 690 (734)
Q Consensus 621 dG~~-----~~~lv~~~l--~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~ 690 (734)
+... +++++.... ..|.||++| ..++||++.+..++|.+++.+|.-...+.. + ..+|..+++- .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~~~~i~~-p--~~~~t~~~fgg~~~~~ 239 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKLLREIEL-P--VPRPTNCAFGGPDGKT 239 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCEEEEEE--S--SSSEEEEEEESTTSSE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccEEEEEcC-C--CCCEEEEEEECCCCCE
Confidence 6332 344443322 359999999 588999999999999999999887666653 2 4589999993 578
Q ss_pred EEEEeC
Q psy8875 691 LYWSDW 696 (734)
Q Consensus 691 lywtd~ 696 (734)
||+|.+
T Consensus 240 L~vTta 245 (246)
T PF08450_consen 240 LYVTTA 245 (246)
T ss_dssp EEEEEB
T ss_pred EEEEeC
Confidence 999864
No 9
>KOG4659|consensus
Probab=99.54 E-value=2.2e-13 Score=154.65 Aligned_cols=227 Identities=19% Similarity=0.269 Sum_probs=167.2
Q ss_pred cccceeeeeeccceEEeecCCCceEEEe---cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC----ceEEEEeC
Q psy8875 472 EGHASLLFARKHDIRKISLDHHEMTAIV---NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS----ERTVVIEE 544 (734)
Q Consensus 472 ~~~~~l~~~~~~~I~~i~l~~~~~~~l~---~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~----~~~~~~~~ 544 (734)
....+|++.+.+-||||..+|...+.+- ....+-.-||++|..+.||++|...++|+|+.-..+. +.++++..
T Consensus 373 a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 373 APDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred cCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 4455788888899999999987665543 3455668899999999999999999999998643222 13343322
Q ss_pred --------------------CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc------------------
Q psy8875 545 --------------------DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR------------------ 586 (734)
Q Consensus 545 --------------------~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~------------------ 586 (734)
.+..|.||||| ..++||++|. .+|.+++.+|-..+++-.
T Consensus 453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 453 GEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVD 529 (1899)
T ss_pred CcCccccccccCcchhcccceeccCCceeEc-cCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhh
Confidence 25689999999 7899999997 679998888866554432
Q ss_pred CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE-------------------EEcCCCCceeEEEecCCCe
Q psy8875 587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV-------------------IVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l-------------------v~~~l~~P~glavD~~~~~ 647 (734)
-.+.+|..|||||..+.||+.| ++.|.++..++..+.++ .+..+..|.+|||. ..|.
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld---~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~ 605 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLD---TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGA 605 (1899)
T ss_pred eeeecccceeecCCCCeEEEee---cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCce
Confidence 2478999999999999999999 46788888777554221 11224457899996 7889
Q ss_pred EEEEeCCCCeEEEEecCCCceEE-EEc------------------------CCCCCCCCeEEEE-ECCEEEEEeCCCCce
Q psy8875 648 LYWVDAKLNEISSCDYNGGNRRL-VLY------------------------SPQTLSHPFSIST-FEDWLYWSDWQQKAI 701 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~~~~-i~~------------------------~~~~~~~P~gl~v-~~~~lywtd~~~~~v 701 (734)
||++++...+|-++..-+++.+. ++. ....+..|.+|+| -.+.||++|.++-+|
T Consensus 606 lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 606 LYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred EEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhh
Confidence 99999877766666644443322 221 1246788999999 678999999998887
Q ss_pred EEEe
Q psy8875 702 YKAN 705 (734)
Q Consensus 702 ~~~~ 705 (734)
.++.
T Consensus 686 r~Vs 689 (1899)
T KOG4659|consen 686 RKVS 689 (1899)
T ss_pred hhhh
Confidence 7553
No 10
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=8.4e-13 Score=137.80 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=149.7
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
..-..+..|++..+.|||+|+..++|++.++..|..+..... ...+.++.+| ..++|..++.+...+.+ -.+..+
T Consensus 24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p--~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~~~ 98 (307)
T COG3386 24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP--GGFSSGALID-AGGRLIACEHGVRLLDP--DTGGKI 98 (307)
T ss_pred cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC--CCcccceeec-CCCeEEEEccccEEEec--cCCcee
Confidence 334566789999999999999999999999975544444333 2346778887 67788877765333333 223333
Q ss_pred EEEEc----CCCCCceeEEEeCCCCeEEEEecC-----C-----CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 582 KVLVR----SYLDEPRSLALNPIDGWMYWSDWG-----Q-----NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 582 ~~l~~----~~l~~P~~iavD~~~g~LYwtd~~-----~-----~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
+.+.. ..+..|+.+.+||. |.+|+++.+ . .++|+|++.+|+..+ ++...+..||||++++.+..
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred EEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCE
Confidence 44332 34678999999985 999999876 2 257999998665444 55556999999999999999
Q ss_pred EEEEeCCCCeEEEEecC---CC--ceEEEEcCCCCCCCCeEEEEE-CCEEE-EEeCCCCceEEEeccCCCceEEEecc
Q psy8875 648 LYWVDAKLNEISSCDYN---GG--NRRLVLYSPQTLSHPFSISTF-EDWLY-WSDWQQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~d---G~--~~~~i~~~~~~~~~P~gl~v~-~~~ly-wtd~~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
||++|+..++|++++++ |. +++..+.....-..|.|++++ ++.|| ++-|+...|.++++. |+.+..+...
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 99999999999999987 32 233233222345789999996 45566 455665699999987 8888877644
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=1.9e-10 Score=124.33 Aligned_cols=224 Identities=15% Similarity=0.159 Sum_probs=156.0
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEE--EEe----------CCCCCccceeeeccCCcEEEEeCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTV--VIE----------EDKTIADGLAVDWIYSHIYWTDAH 567 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~--~~~----------~~~~~p~glAvD~~~~~lY~td~~ 567 (734)
....|..|++++..+.||+++...+.|..+.++. |..... ++. .....|..+.+++.++.||++|.+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 5668899999999999999999999998888764 322222 121 123567889999999999999999
Q ss_pred CCeEEEEeCCCCc--e---EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEEE--EEc---C---
Q psy8875 568 KNTIELANFEGTM--R---KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNMV--IVS---D--- 632 (734)
Q Consensus 568 ~~~I~~~~ldG~~--~---~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~l--v~~---~--- 632 (734)
.++|.+.+++... . ..+.......|+.|+++|...++|++.. ....|.+.+++ ....+.+ +.. .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 9999999997654 2 2233356778999999999899999984 34678777776 2222211 111 1
Q ss_pred CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC--ceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEE--ec
Q psy8875 633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG--NRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKA--NK 706 (734)
Q Consensus 633 l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~--~~ 706 (734)
...|.+|+|++.+++||++....+.|..++++.. ..+.+........+|.+|++ .+++||+++...+.|..+ +.
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 1378999999999999999999999999998543 33333222223457999999 789999999888876655 55
Q ss_pred cCCCceEEEecccccCCCcc
Q psy8875 707 FTGDNLTAITGVHQTHEPLN 726 (734)
Q Consensus 707 ~~G~~~~~l~~~~~l~~P~~ 726 (734)
.+|....+.. ...+..|.-
T Consensus 324 ~tG~l~~~~~-~~~~~~p~c 342 (345)
T PF10282_consen 324 DTGKLTPVGS-SVPIPSPVC 342 (345)
T ss_dssp TTTEEEEEEE-EEESSSEEE
T ss_pred CCCcEEEecc-cccCCCCEE
Confidence 5666444332 234666653
No 12
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.1e-09 Score=119.47 Aligned_cols=235 Identities=14% Similarity=0.142 Sum_probs=167.0
Q ss_pred ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875 489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568 (734)
Q Consensus 489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~ 568 (734)
...+......+.....|.++++.+....+||++.....|..+... ....+.....+...|.++++...+.++|.++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~ 95 (381)
T COG3391 17 NTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS 95 (381)
T ss_pred eecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCC
Confidence 333333444444445788999998888999999777766665543 2223333333447899999999999999999988
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
+.|.+.++........+. ....|.+|++++..++||+++.+ ....|.+++.........+. .-..|.++++|+.+.+
T Consensus 96 ~~v~vid~~~~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P~~~a~~p~g~~ 173 (381)
T COG3391 96 NTVSVIDTATNTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTPTGVAVDPDGNK 173 (381)
T ss_pred CeEEEEcCcccceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCcceEEECCCCCe
Confidence 999999965543332221 22389999999999999999985 35788887766543332222 2236899999999999
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEc---CCCCCCCCeEEEE--ECCEEEEEeCCC--CceEEEeccCCCceEEEecccc
Q psy8875 648 LYWVDAKLNEISSCDYNGGNRRLVLY---SPQTLSHPFSIST--FEDWLYWSDWQQ--KAIYKANKFTGDNLTAITGVHQ 720 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~~~~i~~---~~~~~~~P~gl~v--~~~~lywtd~~~--~~v~~~~~~~G~~~~~l~~~~~ 720 (734)
+|+++...+.|..++..+..... .. .-.....|.++++ .+.++|+++..+ +.|.+++..++...........
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 252 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS 252 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence 99999999999999977765553 11 1134567888888 678899999988 6899998877776665333344
Q ss_pred cCCCccCC
Q psy8875 721 THEPLNSP 728 (734)
Q Consensus 721 l~~P~~i~ 728 (734)
+ +|+.+.
T Consensus 253 ~-~~~~v~ 259 (381)
T COG3391 253 G-APRGVA 259 (381)
T ss_pred C-CCCcee
Confidence 5 676664
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=3.4e-09 Score=114.02 Aligned_cols=223 Identities=16% Similarity=0.173 Sum_probs=148.3
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEE-EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVV-IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
...|..|++++..+.||.+....+.|..++++. +...+.+ .......|.++++++.++.||+++...++|.+.+++..
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 347889999999999999998888888877752 2221111 11234578999999999999999999999999988642
Q ss_pred ce------EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC--CceEEEEE-----c---CCCCceeEEEec
Q psy8875 580 MR------KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG--SHRNMVIV-----S---DIKWPNGLTLDL 643 (734)
Q Consensus 580 ~~------~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG--~~~~~lv~-----~---~l~~P~glavD~ 643 (734)
.. ..+.......|++++++|...+||.++.. ...|...+++. ...+.+.. . ...+|.+|++++
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 11 11111234679999999998999999864 36777777752 12222211 1 123566799999
Q ss_pred CCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEE--eccCCCceEEEec
Q psy8875 644 VQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKA--NKFTGDNLTAITG 717 (734)
Q Consensus 644 ~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~--~~~~G~~~~~l~~ 717 (734)
.+++||+++...+.|..++++ +...+.+... .....|.++++ .+.+||++....+.|..+ +..+|. ++.+..
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~-l~~~~~ 315 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL-LTELGR 315 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc-EEEccc
Confidence 899999998888888887764 3333322221 12346777877 578999999877765554 444554 444443
Q ss_pred ccccCCCccC
Q psy8875 718 VHQTHEPLNS 727 (734)
Q Consensus 718 ~~~l~~P~~i 727 (734)
......|..+
T Consensus 316 ~~~g~~P~~~ 325 (330)
T PRK11028 316 YAVGQGPMWV 325 (330)
T ss_pred cccCCCceEE
Confidence 3334566554
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.27 E-value=4.4e-09 Score=113.08 Aligned_cols=224 Identities=13% Similarity=0.111 Sum_probs=146.9
Q ss_pred ccceEEeecCC-CceE--EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEEEeCCCCCccceeeecc
Q psy8875 482 KHDIRKISLDH-HEMT--AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVVIEEDKTIADGLAVDWI 557 (734)
Q Consensus 482 ~~~I~~i~l~~-~~~~--~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~~~~~~~~p~glAvD~~ 557 (734)
+..|+.++++. ...+ ..+.....+..|++++..+.||++....+.|+.++++. +....+........|..|++++.
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ 90 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC
Confidence 35566666642 2222 22333456788899988889999988778887766652 32221111112347899999999
Q ss_pred CCcEEEEeCCCCeEEEEeCC--CCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE------EE
Q psy8875 558 YSHIYWTDAHKNTIELANFE--GTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN------MV 628 (734)
Q Consensus 558 ~~~lY~td~~~~~I~~~~ld--G~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~------~l 628 (734)
++.||.+....+.|.+.+++ |...+.+. ......|.+++++|..++||+++.+. .+|...+++..... .+
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~-~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE-DRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC-CEEEEEEECCCCcccccCCCce
Confidence 99999999888888888775 43222221 13456799999999999999999764 67877777532111 01
Q ss_pred EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC--CceEEEEc---CCC---CCCCCeEEEE--ECCEEEEEeCCC
Q psy8875 629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNRRLVLY---SPQ---TLSHPFSIST--FEDWLYWSDWQQ 698 (734)
Q Consensus 629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~i~~---~~~---~~~~P~gl~v--~~~~lywtd~~~ 698 (734)
....-..|+++++++.+++||+++...+.|..++++. ...+.+.. .+. ...+|.+|++ .+.+||+++...
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 1112356999999999999999999889999988863 22222211 111 1124556666 567899998877
Q ss_pred CceEEEec
Q psy8875 699 KAIYKANK 706 (734)
Q Consensus 699 ~~v~~~~~ 706 (734)
+.|..++.
T Consensus 250 ~~I~v~~i 257 (330)
T PRK11028 250 SLISVFSV 257 (330)
T ss_pred CeEEEEEE
Confidence 77766654
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.26 E-value=3.9e-09 Score=114.01 Aligned_cols=244 Identities=17% Similarity=0.192 Sum_probs=160.2
Q ss_pred cceEEeec--CCCceEEE--ecCCcceEEEeeeccCCeEEEEEeC---CCcEEEEecCCC--CceEEE-EeCCCCCccce
Q psy8875 483 HDIRKISL--DHHEMTAI--VNSTKSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEG--SERTVV-IEEDKTIADGL 552 (734)
Q Consensus 483 ~~I~~i~l--~~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g--~~~~~~-~~~~~~~p~gl 552 (734)
..|+.+.+ +...++.+ +....+|.-|++++..+.||.++.. .+.|..+.++.. ....+- +......|..|
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 34555555 33344332 3456788889999999999999884 577777666642 221111 11245678899
Q ss_pred eeeccCCcEEEEeCCCCeEEEEeCC--CCceEE--EEc----------CCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875 553 AVDWIYSHIYWTDAHKNTIELANFE--GTMRKV--LVR----------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERA 618 (734)
Q Consensus 553 AvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~--l~~----------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~ 618 (734)
++|+.++.||+++...+.|.++.++ |..... ++. ....+|..+.++|..++||++|.+. .+|++.
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~ 171 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVY 171 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-TEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-CEEEEE
Confidence 9999999999999999999888875 443333 221 2356888999999999999999875 789888
Q ss_pred ccCCCc--eE---EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEc---C---CCCCCCCeEEE
Q psy8875 619 GMDGSH--RN---MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLY---S---PQTLSHPFSIS 685 (734)
Q Consensus 619 ~ldG~~--~~---~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~---~---~~~~~~P~gl~ 685 (734)
+++... .. .+....-..|+.|++++.++++|++....+.|..++++ ....+.+.. . ......|.+|+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 887654 21 12223446799999999999999999999999999988 222222211 1 11112678888
Q ss_pred EE--CCEEEEEeCCCCceEEEec--cCCCceEEEecccc-cCCCccCC
Q psy8875 686 TF--EDWLYWSDWQQKAIYKANK--FTGDNLTAITGVHQ-THEPLNSP 728 (734)
Q Consensus 686 v~--~~~lywtd~~~~~v~~~~~--~~G~~~~~l~~~~~-l~~P~~i~ 728 (734)
+. +.+||+++.+.+.|..+.. .+|+ ++.+..... -.+|..++
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEE
Confidence 84 7899999999988766654 4444 333322211 33465553
No 16
>KOG4659|consensus
Probab=99.26 E-value=2.3e-10 Score=130.79 Aligned_cols=197 Identities=19% Similarity=0.279 Sum_probs=144.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCccceeeeccCCcEEEEeCCCCeEEEEe-CCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIADGLAVDWIYSHIYWTDAHKNTIELAN-FEG 578 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~-ldG 578 (734)
+-.|++||+-+ .+.||+-|. +.|.|+..+ |+..+++.- .....-.-|||+|+.+.||++|...++|+++. +.+
T Consensus 364 L~aPvala~a~-DGSl~VGDf--NyIRRI~~d-g~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~ 439 (1899)
T KOG4659|consen 364 LFAPVALAYAP-DGSLIVGDF--NYIRRISQD-GQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP 439 (1899)
T ss_pred eeceeeEEEcC-CCcEEEccc--hheeeecCC-CceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc
Confidence 45789999876 789999884 578898888 665555432 23344557999999999999999999988863 433
Q ss_pred Cc----eEEEEc--------------------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE----
Q psy8875 579 TM----RKVLVR--------------------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV---- 630 (734)
Q Consensus 579 ~~----~~~l~~--------------------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~---- 630 (734)
+. -.+++. ..|..|+||||| ..|.|||+| ...|.+++.+|-.++++-+
T Consensus 440 ~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD---~t~IR~iD~~giIstlig~~~~~ 515 (1899)
T KOG4659|consen 440 QDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFAD---GTRIRVIDTTGIISTLIGTTPDQ 515 (1899)
T ss_pred cccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEec---ccEEEEeccCceEEEeccCCCCc
Confidence 21 222221 247899999999 479999999 3578888888765544321
Q ss_pred --------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC------------------CCCC
Q psy8875 631 --------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS------------------PQTL 678 (734)
Q Consensus 631 --------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~------------------~~~~ 678 (734)
-.+.||..|||||..+.||+.| ++.|.++..++.-+ +++.. +..+
T Consensus 516 ~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 516 HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred cCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhh
Confidence 2378999999999999999999 56898888776544 22211 1223
Q ss_pred CCCeEEEE-ECCEEEEEeCCCCceEEEeccCC
Q psy8875 679 SHPFSIST-FEDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 679 ~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G 709 (734)
..|.+|++ ..|.||+++....+|.|+.+.+.
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~t 624 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGRRINRVRKLST 624 (1899)
T ss_pred hhhhceeecCCceEEEEeccchhhhheEEecc
Confidence 44678999 67999999999988888877553
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=6.2e-09 Score=113.71 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=156.7
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC--CCeEEEEeCCCCc
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH--KNTIELANFEGTM 580 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~--~~~I~~~~ldG~~ 580 (734)
..|.++++.....++|..+...+.|..+++........+.. + ..|.+|++++.+++||+++.. +++|.+++.....
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-G-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-c-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 66789999998999999998889999988653222222222 2 289999999999999999994 6899998877554
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE----EEEcCCCCceeEEEecCCCeEEEEeCCC-
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM----VIVSDIKWPNGLTLDLVQRRLYWVDAKL- 655 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~----lv~~~l~~P~glavD~~~~~LYw~D~~~- 655 (734)
....+ .....|.+++++|...++|.++.. ...|...++.+..... ........|.+++|++.+.++|+++...
T Consensus 152 ~~~~~-~vG~~P~~~a~~p~g~~vyv~~~~-~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTATI-PVGNTPTGVAVDPDGNKVYVTNSD-DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEE-ecCCCcceEEECCCCCeEEEEecC-CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 43332 333478999999999999999944 4788888876654332 0123467899999999999999999877
Q ss_pred -CeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 656 -NEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 656 -~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+.|.+++...............+ .|+++++ .+..+|+++...+.|..++..+......+.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 68998887766555442222345 7888888 688999998888899999877766655543
No 18
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.17 E-value=5.3e-09 Score=113.84 Aligned_cols=197 Identities=21% Similarity=0.326 Sum_probs=131.4
Q ss_pred CcceEEEeeeccCCeEEEEEeC-----------CC-cEEEEecCCC--C-ceEEEEeCCCCCccceeeeccCCcEEEEeC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDIS-----------EK-KIYKAPIDEG--S-ERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~-----------~~-~I~~~~l~~g--~-~~~~~~~~~~~~p~glAvD~~~~~lY~td~ 566 (734)
+..|++|++|. .++||+++.. .+ +|+++.-..+ . ....++..++..|.||++.. .+ ||+++.
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~ 89 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP 89 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC
Confidence 78999999996 6889999842 22 7877764222 2 23345556788999999974 45 999975
Q ss_pred CCCeEEEE-eCCCC-----ceEEEEcCC-------CCCceeEEEeCCCCeEEEEecCC------------------CceE
Q psy8875 567 HKNTIELA-NFEGT-----MRKVLVRSY-------LDEPRSLALNPIDGWMYWSDWGQ------------------NAKI 615 (734)
Q Consensus 567 ~~~~I~~~-~ldG~-----~~~~l~~~~-------l~~P~~iavD~~~g~LYwtd~~~------------------~~~I 615 (734)
..|.++ +.+|. .+++|+..- ...+.+|+++| .|+||++.... .+.|
T Consensus 90 --~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 90 --PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred --CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 467766 44432 344454321 23488999998 68999987421 1479
Q ss_pred EEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CC--------ce----------EEE----
Q psy8875 616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GG--------NR----------RLV---- 671 (734)
Q Consensus 616 ~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~--------~~----------~~i---- 671 (734)
+|.+.+|+..+++ ...+..|+||++|+ .+.||++|.......++..- |. .. ..+
T Consensus 167 ~r~~pdg~~~e~~-a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 244 (367)
T TIGR02604 167 FRYNPDGGKLRVV-AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGE 244 (367)
T ss_pred EEEecCCCeEEEE-ecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccc
Confidence 9999999877654 46799999999996 78899998755544444311 10 00 000
Q ss_pred --------Ec---CCCCCCCCeEEEEE---------CCEEEEEeCCCCceEEEec
Q psy8875 672 --------LY---SPQTLSHPFSISTF---------EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 672 --------~~---~~~~~~~P~gl~v~---------~~~lywtd~~~~~v~~~~~ 706 (734)
+. .-.....|.|++++ .+.||+++|..+.|+++..
T Consensus 245 ~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l 299 (367)
T TIGR02604 245 WRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSL 299 (367)
T ss_pred cccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEe
Confidence 00 00011258898886 3789999999999998864
No 19
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4e-08 Score=102.85 Aligned_cols=228 Identities=16% Similarity=0.203 Sum_probs=146.9
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe----CCCCCc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE----EDKTIA 549 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~----~~~~~p 549 (734)
.|+|.+ ...|.+.+........+........++.++ ..+.|..++. .+++.+++.+...+.+.. ..+..|
T Consensus 38 ~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~---g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 38 ALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACEH---GVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEcc---ccEEEeccCCceeEEeccccCCCCcCCC
Confidence 355544 567888887644444443322234444455 3566665542 244444443443233322 234678
Q ss_pred cceeeeccCCcEEEEeCC-----------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875 550 DGLAVDWIYSHIYWTDAH-----------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA 618 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~-----------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~ 618 (734)
..+.+|+. +.+|+++.. .++|++++.+|...+ ++...+..|+|||++|....||++|.. ..+|++.
T Consensus 114 ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~-~~~i~r~ 190 (307)
T COG3386 114 NDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTP-ANRIHRY 190 (307)
T ss_pred CceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCEEEEEeCC-CCeEEEE
Confidence 89999955 899999876 246899988666554 444568899999999999999999964 4799999
Q ss_pred ccC---CC--ceEEEEEc--CCCCceeEEEecCCCeEE-EEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC--
Q psy8875 619 GMD---GS--HRNMVIVS--DIKWPNGLTLDLVQRRLY-WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-- 688 (734)
Q Consensus 619 ~ld---G~--~~~~lv~~--~l~~P~glavD~~~~~LY-w~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-- 688 (734)
.++ |. ++...+.. .-..|-|+++| .++.|| ++-+....|.+++.+|.....+.. + ...|..+++-+
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~l-P--~~~~t~~~FgG~~ 266 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKL-P--VKRPTNPAFGGPD 266 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEEC-C--CCCCccceEeCCC
Confidence 887 32 12222322 34679999999 677777 455555699999999887776653 1 26778888865
Q ss_pred -CEEEEEeCCCCc--eEEEeccCCCceEE
Q psy8875 689 -DWLYWSDWQQKA--IYKANKFTGDNLTA 714 (734)
Q Consensus 689 -~~lywtd~~~~~--v~~~~~~~G~~~~~ 714 (734)
+.||+|....+. .+..+++.|....+
T Consensus 267 ~~~L~iTs~~~~~~~~~~~~~~~G~lf~~ 295 (307)
T COG3386 267 LNTLYITSARSGMSRMLTADPLGGGLFSL 295 (307)
T ss_pred cCEEEEEecCCCCCccccccccCceEEEE
Confidence 899999876532 22234444544333
No 20
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.07 E-value=7.5e-08 Score=97.45 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=125.0
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--CC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--GT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~ 579 (734)
...+.||+|++.+++||-+.-..+.|+.++++ |.....+.-.+...++||++- -++.+.+++...++|.++.++ +.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccc
Confidence 44689999999999999988788899999987 444333323467889999995 445555566667888888773 22
Q ss_pred c--eEE---EE--cC--CCCCceeEEEeCCCCeEEEEecCCCceEEEecc--CCCceEEEEE-------cCCCCceeEEE
Q psy8875 580 M--RKV---LV--RS--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM--DGSHRNMVIV-------SDIKWPNGLTL 641 (734)
Q Consensus 580 ~--~~~---l~--~~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l--dG~~~~~lv~-------~~l~~P~glav 641 (734)
. +.. +- .. .-....|||.|+.+++||++.......|+..+. .+....+... ..+..|.+|++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1 111 11 11 223468999999999999997655557887776 3322222221 13567899999
Q ss_pred ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC------CCCCCCeEEEE-ECCEEEEEeCCCCceEEE
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP------QTLSHPFSIST-FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~------~~~~~P~gl~v-~~~~lywtd~~~~~v~~~ 704 (734)
|+.++.||+.....++|..++.+|.-+..+.-.. ..+++|-||++ .+|.||++.-- +..+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence 9999999999999999999999998655543322 34678999999 56899998853 455554
No 21
>KOG4499|consensus
Probab=99.06 E-value=1.7e-08 Score=96.83 Aligned_cols=205 Identities=16% Similarity=0.229 Sum_probs=125.5
Q ss_pred EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC-cEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS-HIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~-~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
.+..|+..++.|||+|+..+.|.|.+..........+.... ..|.++--.++ ..|.+--+ .+....+.+|....++
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G-~kf~i~nwd~~~~~a~ 94 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCG-SKFVIVNWDGVSESAK 94 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeec-ceEEEEEcccccceee
Confidence 56678888999999999888777765543222222222110 11222211111 13333222 2344455665543333
Q ss_pred EcCC---------CCCceeEEEeCCCCeEEEEecCC--------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 585 VRSY---------LDEPRSLALNPIDGWMYWSDWGQ--------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 585 ~~~~---------l~~P~~iavD~~~g~LYwtd~~~--------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
+... -.+-+.--|||.. +.|.-.... .+.+++--+++. .+ ++...+..||||++|...+.
T Consensus 95 v~~t~~ev~~d~kknR~NDgkvdP~G-ryy~GtMad~~~~le~~~g~Ly~~~~~h~-v~-~i~~~v~IsNgl~Wd~d~K~ 171 (310)
T KOG4499|consen 95 VYRTLFEVQPDRKKNRLNDGKVDPDG-RYYGGTMADFGDDLEPIGGELYSWLAGHQ-VE-LIWNCVGISNGLAWDSDAKK 171 (310)
T ss_pred eeeeccccCchHHhcccccCccCCCC-ceeeeeeccccccccccccEEEEeccCCC-ce-eeehhccCCccccccccCcE
Confidence 2211 1233566678754 446543221 133444333433 33 34567888999999999999
Q ss_pred EEEEeCCCCeEEEEecC--C---CceEEEEcCCC----CCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 648 LYWVDAKLNEISSCDYN--G---GNRRLVLYSPQ----TLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~d--G---~~~~~i~~~~~----~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+|++|+.+-.|...++| + ++|++|+.-.. ....|.|+++ .+|.||++-|..++|+++++.+|+.+..+.
T Consensus 172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 99999999999777744 3 47777765321 3345889999 579999999999999999999999877664
No 22
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.03 E-value=1.6e-10 Score=79.75 Aligned_cols=36 Identities=58% Similarity=1.429 Sum_probs=34.1
Q ss_pred CCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
+|+ .++|+|.+|.||+..|+|||..||.||+||.+|
T Consensus 2 ~C~-~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCP-PGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSS-TTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCc-CCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 677 899999999999999999999999999999876
No 23
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.97 E-value=4.9e-07 Score=96.02 Aligned_cols=234 Identities=13% Similarity=0.144 Sum_probs=150.6
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEE-EeCC-----CC
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVV-IEED-----KT 547 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~-~~~~-----~~ 547 (734)
..|..|+.+..++...++....|.++ +.+..+.||++.. ....|..+++........+ +... ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 46888888877776666666788886 8888999999998 6778888888754432222 2111 23
Q ss_pred CccceeeeccCCcEEEEeCC-CCeEEEEeCC------------------------------CCceEEEEc---------C
Q psy8875 548 IADGLAVDWIYSHIYWTDAH-KNTIELANFE------------------------------GTMRKVLVR---------S 587 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td~~-~~~I~~~~ld------------------------------G~~~~~l~~---------~ 587 (734)
.|..+++.+.++.||+++.. ...|.++++. |+...+-+. .
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeee
Confidence 45589999999999998865 5555555543 222221000 0
Q ss_pred C---------CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-----cC----CCCcee---EEEecCCC
Q psy8875 588 Y---------LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-----SD----IKWPNG---LTLDLVQR 646 (734)
Q Consensus 588 ~---------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-----~~----l~~P~g---lavD~~~~ 646 (734)
. ..+| ++.+..|.++|.... +.|..+++.+........ .. --.|.| +++.+.++
T Consensus 186 ~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 186 EVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 0 1233 223334666666532 789999886654333211 11 113555 99999999
Q ss_pred eEEEEe-C--------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECC-EEEEEeCCCCceEEEeccCCCceEE
Q psy8875 647 RLYWVD-A--------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FED-WLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 647 ~LYw~D-~--------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~-~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
+||++. . ..++|+.++.....+...+. ....|.+|++ ++. +||.+++.++.|..++..+++.+..
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~---vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE---LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe---CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 999953 2 22589998876554444332 2346788888 567 8999999999999999988888887
Q ss_pred EecccccCCCccC
Q psy8875 715 ITGVHQTHEPLNS 727 (734)
Q Consensus 715 l~~~~~l~~P~~i 727 (734)
+... -..|..+
T Consensus 338 i~~v--g~~P~~~ 348 (352)
T TIGR02658 338 VNQL--GRGPQVI 348 (352)
T ss_pred eccC--CCCCeEE
Confidence 7332 3455544
No 24
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.97 E-value=2.8e-10 Score=77.70 Aligned_cols=35 Identities=60% Similarity=1.487 Sum_probs=32.6
Q ss_pred CCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875 54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 54 C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
|+ +.+|+|.+|.||+..|+|||+.||+|||||.+|
T Consensus 1 C~-~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CP-PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CC-CCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 55 689999999999999999999999999999876
No 25
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=5.9e-07 Score=92.01 Aligned_cols=223 Identities=14% Similarity=0.155 Sum_probs=151.0
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEE---EEeCC--------CCCccceeeeccCCcEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTV---VIEED--------KTIADGLAVDWIYSHIYWTDAHKN 569 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~---~~~~~--------~~~p~glAvD~~~~~lY~td~~~~ 569 (734)
...|.-|++|...+.||.+++..+.|.+..+.. |....+ +...+ ...+...-+++.++.|+..|.+..
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 345588999998899999999999888777643 433222 11111 112456778888999999999999
Q ss_pred eEEEEeCCCCceEE---EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--eEEEEE--------cCCCCc
Q psy8875 570 TIELANFEGTMRKV---LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--RNMVIV--------SDIKWP 636 (734)
Q Consensus 570 ~I~~~~ldG~~~~~---l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--~~~lv~--------~~l~~P 636 (734)
+|...+++...... ........||.|+++|...+.|... ..++.|.+...++.. .+.+.. .+-.+-
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 99999886322211 1115567899999999999999987 345788888777632 111111 123456
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEe--cCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCC--ceEEEeccCCC
Q psy8875 637 NGLTLDLVQRRLYWVDAKLNEISSCD--YNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQK--AIYKANKFTGD 710 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~~~~~I~~~~--~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~--~v~~~~~~~G~ 710 (734)
.+|.|.+.++.||.++.+.+.|..+. .+|+..+.+...+.....|.+..+ .++.|+.+.-+++ .|+++++.+|.
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 78999999999999999888776655 455555555443344455877777 6788888876554 56778888887
Q ss_pred ceEEEecccccCCCcc
Q psy8875 711 NLTAITGVHQTHEPLN 726 (734)
Q Consensus 711 ~~~~l~~~~~l~~P~~ 726 (734)
...... ....+.|+-
T Consensus 327 L~~~~~-~~~~p~Pvc 341 (346)
T COG2706 327 LTLLGR-YAVVPEPVC 341 (346)
T ss_pred EEeccc-ccCCCCcEE
Confidence 544433 234556653
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.94 E-value=1.5e-06 Score=91.14 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=151.3
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEE
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIY 562 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY 562 (734)
..|+.+++........+.....+..+++++..+.||.+....+.|+..++..+... ..+. ....|.++++++.+..|+
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~-~~~~-~~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL-AEIP-VGVEPEGMAVSPDGKIVV 130 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE-eEee-CCCCcceEEECCCCCEEE
Confidence 45666776655444333333456778898888888888766778998888743221 1222 223578999997666666
Q ss_pred EEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEE-E-----cCCCC
Q psy8875 563 WTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVI-V-----SDIKW 635 (734)
Q Consensus 563 ~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv-~-----~~l~~ 635 (734)
++......+...++........+ .....|..+++++...+||++.. ..+.|...++..... ..+- . .....
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNV-LVDQRPRFAEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEE-EcCCCccEEEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 66554445666666543322211 12346889999988777777642 236777777754322 2111 1 11235
Q ss_pred ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
|.++++++.+.++|++....++|..+++........+.. ...|.+|++ .+.+||.+....+.|..++..+++.++
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 778999988889999887778899888765443332221 234777877 567888887777889999998888877
Q ss_pred EEecccccCCCccCC
Q psy8875 714 AITGVHQTHEPLNSP 728 (734)
Q Consensus 714 ~l~~~~~l~~P~~i~ 728 (734)
.+.. -..|.+|+
T Consensus 286 ~~~~---~~~~~~~~ 297 (300)
T TIGR03866 286 SIKV---GRLPWGVV 297 (300)
T ss_pred EEEc---ccccceeE
Confidence 7763 35676664
No 27
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.93 E-value=2.8e-09 Score=76.30 Aligned_cols=42 Identities=48% Similarity=1.032 Sum_probs=38.9
Q ss_pred CeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEec
Q psy8875 602 GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDL 643 (734)
Q Consensus 602 g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~ 643 (734)
++|||+|++..++|++++|||+.+++++...+.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 589999998655999999999999999999999999999984
No 28
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.89 E-value=3e-06 Score=88.91 Aligned_cols=229 Identities=10% Similarity=0.018 Sum_probs=144.4
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
...|+.+++........+.....+.++++++..+.||.+....+.|+..++..+.....+ . ....+..+++++.++.|
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~-~~~~~~~~~~~~~g~~l 87 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-P-SGPDPELFALHPNGKIL 87 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-c-CCCCccEEEECCCCCEE
Confidence 345666666544443444444557789998877788888877788998888754432222 2 22457788998888889
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav 641 (734)
|.+....+.|.+.++........+ .....|.+++++|...+|+.+... ...+...++........+. .-..|..+++
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~ 164 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKVLAEI-PVGVEPEGMAVSPDGKIVVNTSET-TNMAHFIDTKTYEIVDNVL-VDQRPRFAEF 164 (300)
T ss_pred EEEcCCCCeEEEEECCCCeEEeEe-eCCCCcceEEECCCCCEEEEEecC-CCeEEEEeCCCCeEEEEEE-cCCCccEEEE
Confidence 988777789999998764322222 223468999999876666665532 2344444554332221111 2245788999
Q ss_pred ecCCCeEEEEeCCCCeEEEEecCCCce-EEEE-cC---CCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDYNGGNR-RLVL-YS---PQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~dG~~~-~~i~-~~---~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
++.+.+||++-...+.|..+++..... +.+. .. ......|.++++ .+..+|++....++|..++..+++.+..
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 888888887765667888888765432 2221 10 011224667777 4567788877777888888777766554
Q ss_pred E
Q psy8875 715 I 715 (734)
Q Consensus 715 l 715 (734)
+
T Consensus 245 ~ 245 (300)
T TIGR03866 245 L 245 (300)
T ss_pred E
Confidence 4
No 29
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.89 E-value=4.5e-07 Score=94.67 Aligned_cols=191 Identities=21% Similarity=0.284 Sum_probs=120.9
Q ss_pred ceEEEeeeccCCeEEEEEeCC------------CcEEEEecCCCCc-eEEEEeCCCC----CccceeeeccC-----CcE
Q psy8875 504 SATAIDFVFRTGMIFWSDISE------------KKIYKAPIDEGSE-RTVVIEEDKT----IADGLAVDWIY-----SHI 561 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~------------~~I~~~~l~~g~~-~~~~~~~~~~----~p~glAvD~~~-----~~l 561 (734)
++.++.+|. .++||+.|.+. .+|+.+++..+.. +++.+...+. ....|+||... +.+
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 345677773 67888888642 3678888875443 2333333322 34469999754 489
Q ss_pred EEEeCCCCeEEEEeCCC-CceEEEEcCC------------------CCCceeEEEeC---CCCeEEEEecCCCceEEEec
Q psy8875 562 YWTDAHKNTIELANFEG-TMRKVLVRSY------------------LDEPRSLALNP---IDGWMYWSDWGQNAKIERAG 619 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG-~~~~~l~~~~------------------l~~P~~iavD~---~~g~LYwtd~~~~~~I~~~~ 619 (734)
|+||.....|.++++.. +.++++-... .....||++.| ..+.|||.-.. ..+++++.
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~ 159 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVP 159 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEE
Confidence 99999999999999854 4444433211 12246788877 34589999854 35677765
Q ss_pred c----CCCc--------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC----CceEEEEcCCCCCCCCeE
Q psy8875 620 M----DGSH--------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG----GNRRLVLYSPQTLSHPFS 683 (734)
Q Consensus 620 l----dG~~--------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG----~~~~~i~~~~~~~~~P~g 683 (734)
. +.+. ....+..+.....|+++|. ++.||+++...+.|.+.+.++ .+.++|++.+..+.+|.+
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 3 2211 1112223334568999995 999999999999999999988 567778877666999999
Q ss_pred EEEEC---CEEEEEeCC
Q psy8875 684 ISTFE---DWLYWSDWQ 697 (734)
Q Consensus 684 l~v~~---~~lywtd~~ 697 (734)
|++.. ++||+....
T Consensus 239 ~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEE-T--TS-EEEEE-S
T ss_pred eeeccccCceEEEEECc
Confidence 99977 999998744
No 30
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.84 E-value=1.6e-07 Score=102.24 Aligned_cols=152 Identities=15% Similarity=0.196 Sum_probs=110.2
Q ss_pred CCCCccceeeeccCCcEEEEeCC-----------C-CeEEEEeC---CCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEe
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAH-----------K-NTIELANF---EGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~-----------~-~~I~~~~l---dG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd 608 (734)
.+..|.+||+| ..++||+++.. . .+|.+..- ||.. ...++...+..|.||++.+ .| ||+++
T Consensus 12 ~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~ 88 (367)
T TIGR02604 12 LLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVAT 88 (367)
T ss_pred ccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeC
Confidence 48899999999 55889999852 2 37877754 4554 2345557788999999986 45 99997
Q ss_pred cCCCceEEEe-ccCCC-----ceEEEEEcC-------CCCceeEEEecCCCeEEEEeCC-------------------CC
Q psy8875 609 WGQNAKIERA-GMDGS-----HRNMVIVSD-------IKWPNGLTLDLVQRRLYWVDAK-------------------LN 656 (734)
Q Consensus 609 ~~~~~~I~~~-~ldG~-----~~~~lv~~~-------l~~P~glavD~~~~~LYw~D~~-------------------~~ 656 (734)
...|++. +.+|. .+++|+..- .+.+++|++++ .++||+++.. .+
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCc
Confidence 3568776 44442 344454421 24488999985 6799998762 15
Q ss_pred eEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEec
Q psy8875 657 EISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~ 706 (734)
.|++++.+|+..+++.. .+..|.||++ ..+.||++|.......+++.
T Consensus 165 ~i~r~~pdg~~~e~~a~---G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 165 GLFRYNPDGGKLRVVAH---GFQNPYGHSVDSWGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred eEEEEecCCCeEEEEec---CcCCCccceECCCCCEEEEccCCCceeEEcc
Confidence 79999999998877653 3789999999 57889999987666666653
No 31
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5e-06 Score=85.34 Aligned_cols=228 Identities=15% Similarity=0.193 Sum_probs=152.6
Q ss_pred ccceEEeecCCC----ceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeC---CCCCccce
Q psy8875 482 KHDIRKISLDHH----EMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEE---DKTIADGL 552 (734)
Q Consensus 482 ~~~I~~i~l~~~----~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~---~~~~p~gl 552 (734)
+..|+++.++.. ....++..+.+|.-|++++..+.||..... .+.|-.+.++..+.+..++.. ....|.-|
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456777777632 233456678899999999999999999876 677766666643233333321 23456889
Q ss_pred eeeccCCcEEEEeCCCCeEEEEeC--CCCceEEE---EcC-C-------CCCceeEEEeCCCCeEEEEecCCCceEEEec
Q psy8875 553 AVDWIYSHIYWTDAHKNTIELANF--EGTMRKVL---VRS-Y-------LDEPRSLALNPIDGWMYWSDWGQNAKIERAG 619 (734)
Q Consensus 553 AvD~~~~~lY~td~~~~~I~~~~l--dG~~~~~l---~~~-~-------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ 619 (734)
++|..++.||.++...+.|.+..+ +|....++ ... . -.++-...++|.+.+|+..|.|. .+|...+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~-Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT-DRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC-ceEEEEE
Confidence 999999999999999999988766 56544432 111 1 12355778899999999999885 6776666
Q ss_pred cC-CCceEE--EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC--ceEEEE---cCCCCC---CCCeEEEE--
Q psy8875 620 MD-GSHRNM--VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG--NRRLVL---YSPQTL---SHPFSIST-- 686 (734)
Q Consensus 620 ld-G~~~~~--lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~i~---~~~~~~---~~P~gl~v-- 686 (734)
++ |..... .....-.-|+=|++-+..+..|.+.--+++|....+++. ..+.+. .-+... .+.-+|.+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 64 432211 111344568999999999999999988899999998874 222221 111111 12234555
Q ss_pred ECCEEEEEeCCCCce--EEEeccCCC
Q psy8875 687 FEDWLYWSDWQQKAI--YKANKFTGD 710 (734)
Q Consensus 687 ~~~~lywtd~~~~~v--~~~~~~~G~ 710 (734)
.+.+||.++.+.++| ++++..+|+
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 688999999987765 456666565
No 32
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.79 E-value=3.3e-09 Score=73.19 Aligned_cols=35 Identities=60% Similarity=1.303 Sum_probs=33.3
Q ss_pred CcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 134 ~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
+|...+|+|.++.||+..|+|||..||.||+||.+
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSS
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCccccc
Confidence 68899999999999999999999999999999976
No 33
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.77 E-value=2.2e-08 Score=71.71 Aligned_cols=41 Identities=34% Similarity=0.695 Sum_probs=39.3
Q ss_pred CcEEEEeCCCC-eEEEEeCCCCceEEEEcCCCCCceeEEEeC
Q psy8875 559 SHIYWTDAHKN-TIELANFEGTMRKVLVRSYLDEPRSLALNP 599 (734)
Q Consensus 559 ~~lY~td~~~~-~I~~~~ldG~~~~~l~~~~l~~P~~iavD~ 599 (734)
++|||||.... .|.+++++|+.+++++...+.+|+||||||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 999999999999999999999999999996
No 34
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.76 E-value=8.1e-07 Score=95.13 Aligned_cols=203 Identities=24% Similarity=0.283 Sum_probs=129.5
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe------CCCCCccceeeec---cCCcEEEEeCCC----
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE------EDKTIADGLAVDW---IYSHIYWTDAHK---- 568 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~------~~~~~p~glAvD~---~~~~lY~td~~~---- 568 (734)
+.+|++|++.+. ++||+++. .++|+++..+ +.....+.. .+...+.|||+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 367999999985 89999986 8999999855 443222221 2334567899998 357888876632
Q ss_pred ----CeEEEEeCCCC-----ceEEEEc------CCCCCceeEEEeCCCCeEEEEecC------------CCceEEEeccC
Q psy8875 569 ----NTIELANFEGT-----MRKVLVR------SYLDEPRSLALNPIDGWMYWSDWG------------QNAKIERAGMD 621 (734)
Q Consensus 569 ----~~I~~~~ldG~-----~~~~l~~------~~l~~P~~iavD~~~g~LYwtd~~------------~~~~I~~~~ld 621 (734)
.+|.+..++.. ..++|+. .....-.+|+++| .|+||++--. ..++|.|++.|
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 46887777544 2333332 2345567899998 5799999521 13689999999
Q ss_pred CCc------------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCc--------------e----
Q psy8875 622 GSH------------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGN--------------R---- 668 (734)
Q Consensus 622 G~~------------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~--------------~---- 668 (734)
|+. ...++...+..|.+|++|+.+++||.+|.+.. .|.++. .|.+ .
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECT
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCcccc
Confidence 972 22356678999999999988899999996544 344433 2211 0
Q ss_pred --------EEEEcCCCCCCCCeEEEEE--------CCEEEEEeCCCCceEEEeccCCC
Q psy8875 669 --------RLVLYSPQTLSHPFSISTF--------EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 669 --------~~i~~~~~~~~~P~gl~v~--------~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
..++.- ..-..|.||+++ .+.++++++...+|+++....+.
T Consensus 236 ~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~ 292 (331)
T PF07995_consen 236 APSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDG 292 (331)
T ss_dssp GSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred ccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCC
Confidence 001100 112458899886 67899999999999999875453
No 35
>KOG1520|consensus
Probab=98.74 E-value=2.5e-07 Score=96.33 Aligned_cols=177 Identities=15% Similarity=0.175 Sum_probs=121.7
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCce-------EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSER-------TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR 586 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~-------~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~ 586 (734)
.+.|+|+-...+.|.++........ .+.....=..|-|||++..++.||++|... -+++++..|...+.+..
T Consensus 75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD 153 (376)
T ss_pred CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc
Confidence 5567888776777766655211111 111111235799999999999999999964 47777888776555543
Q ss_pred C----CCCCceeEEEeCCCCeEEEEecCC----------------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCC
Q psy8875 587 S----YLDEPRSLALNPIDGWMYWSDWGQ----------------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR 646 (734)
Q Consensus 587 ~----~l~~P~~iavD~~~g~LYwtd~~~----------------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~ 646 (734)
. .+.-.+++.||+ +|.|||||.+. .+++.+.+..-...+ ++..++..||||++.+.+.
T Consensus 154 ~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~-VLld~L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 154 EAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTK-VLLDGLYFPNGLALSPDGS 231 (376)
T ss_pred cccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchh-hhhhcccccccccCCCCCC
Confidence 3 234557999999 99999999653 234444443333333 3346799999999999999
Q ss_pred eEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEEC-CEEEEEe
Q psy8875 647 RLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTFE-DWLYWSD 695 (734)
Q Consensus 647 ~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~~-~~lywtd 695 (734)
.|.+++....+|.++-+.|... .+++. ...+.|.-|...+ |.+|++-
T Consensus 232 fvl~~Et~~~ri~rywi~g~k~gt~EvFa~--~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 232 FVLVAETTTARIKRYWIKGPKAGTSEVFAE--GLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred EEEEEeeccceeeeeEecCCccCchhhHhh--cCCCCCcceeECCCCCEEEEE
Confidence 9999999999999999998866 66654 2456788888854 4444443
No 36
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.74 E-value=4.6e-09 Score=71.75 Aligned_cols=34 Identities=62% Similarity=1.367 Sum_probs=31.8
Q ss_pred cccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 135 C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
|.+.+|+|.+++||+..|+|||..||+|||||..
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~ 34 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCccccc
Confidence 5678999999999999999999999999999975
No 37
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.73 E-value=1.8e-06 Score=92.58 Aligned_cols=224 Identities=19% Similarity=0.263 Sum_probs=135.8
Q ss_pred eeeeeec-cceEEeecCCCceEEE-------ecCCcceEEEeeec---cCCeEEEEEeCC--------CcEEEEecCCCC
Q psy8875 476 SLLFARK-HDIRKISLDHHEMTAI-------VNSTKSATAIDFVF---RTGMIFWSDISE--------KKIYKAPIDEGS 536 (734)
Q Consensus 476 ~l~~~~~-~~I~~i~l~~~~~~~l-------~~~~~~~~~i~~d~---~~~~lyw~d~~~--------~~I~~~~l~~g~ 536 (734)
.+|++.+ ..|+++..++.....+ ........+|++++ .++.||++-... .+|.|+.++.+.
T Consensus 14 ~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~ 93 (331)
T PF07995_consen 14 RLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGD 93 (331)
T ss_dssp CEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTS
T ss_pred cEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCc
Confidence 3455443 5677777555542222 12345678999998 357888876532 468888887541
Q ss_pred ----ceEEEEe------CCCCCccceeeeccCCcEEEEeC-------------CCCeEEEEeCCCCc------------e
Q psy8875 537 ----ERTVVIE------EDKTIADGLAVDWIYSHIYWTDA-------------HKNTIELANFEGTM------------R 581 (734)
Q Consensus 537 ----~~~~~~~------~~~~~p~glAvD~~~~~lY~td~-------------~~~~I~~~~ldG~~------------~ 581 (734)
..++++. .......+|++++. ++||++-. ..++|.+++.+|+. .
T Consensus 94 ~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD-G~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~ 172 (331)
T PF07995_consen 94 GDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD-GKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGAD 172 (331)
T ss_dssp CEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-SEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTST
T ss_pred cccccceEEEEEeCCCCCCCCCCccccCCCC-CcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCce
Confidence 1233332 12344567999964 59999832 14789999999872 2
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCc---------------------------eEEEEEcC
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSH---------------------------RNMVIVSD 632 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~---------------------------~~~lv~~~ 632 (734)
..++..++.+|.++++||.+|.||.+|.+.. -.|.++. .|.+ ..++....
T Consensus 173 ~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 251 (331)
T PF07995_consen 173 SEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPP 251 (331)
T ss_dssp TTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETT
T ss_pred EEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecC
Confidence 2345578999999999999999999997642 2444432 1111 01111122
Q ss_pred CCCceeEEEe------cCCCeEEEEeCCCCeEEEEecCCCce----EEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCce
Q psy8875 633 IKWPNGLTLD------LVQRRLYWVDAKLNEISSCDYNGGNR----RLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAI 701 (734)
Q Consensus 633 l~~P~glavD------~~~~~LYw~D~~~~~I~~~~~dG~~~----~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v 701 (734)
-..|.||++- ...+.+++++....+|+++.++.... ..++ ......|.+|++ ..|.||+++-.+++|
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--GGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--TTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--ccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 2457888874 13578999999999999999874422 2222 122337889999 568999999899999
Q ss_pred EE
Q psy8875 702 YK 703 (734)
Q Consensus 702 ~~ 703 (734)
+|
T Consensus 330 yR 331 (331)
T PF07995_consen 330 YR 331 (331)
T ss_dssp EE
T ss_pred eC
Confidence 87
No 38
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.70 E-value=5.8e-09 Score=71.03 Aligned_cols=36 Identities=50% Similarity=1.207 Sum_probs=30.8
Q ss_pred cccCCCCCcCccccCCCcceeecCCCcEecCCCCcc
Q psy8875 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427 (734)
Q Consensus 392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C 427 (734)
|..++++|+|+|++++++|+|+|++||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 455678999999999999999999999999999987
No 39
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.66 E-value=1.7e-08 Score=68.01 Aligned_cols=32 Identities=56% Similarity=1.373 Sum_probs=30.0
Q ss_pred CCCCCceecCCCceecCcCccCCCCCCCCCCcc
Q psy8875 54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 86 (734)
Q Consensus 54 C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de 86 (734)
|+ ..+|+|.+|.||+..|+|||+.||+||+||
T Consensus 2 C~-~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CP-PGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CC-CCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 66 569999999999999999999999999998
No 40
>KOG1520|consensus
Probab=98.62 E-value=1.4e-06 Score=90.76 Aligned_cols=142 Identities=20% Similarity=0.308 Sum_probs=105.2
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCccceeeeccCCcEEEEeCCC----------
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIADGLAVDWIYSHIYWTDAHK---------- 568 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p~glAvD~~~~~lY~td~~~---------- 568 (734)
.+|.||+++..++.||++|...+ ++.+.+.++. .+.+... .+.-..+|.||. ++.|||||+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCc-ceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEe
Confidence 68999999999999999997655 7888887443 3333222 233456899997 99999999863
Q ss_pred -------CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce---EEEEEcCCCCcee
Q psy8875 569 -------NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR---NMVIVSDIKWPNG 638 (734)
Q Consensus 569 -------~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~---~~lv~~~l~~P~g 638 (734)
+|+.+.+...+..++|+ .+|.-|+|||+.|...++.+++.. ..+|.|..+.|... ++++...-..|.-
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa~~LPG~PDN 269 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFAEGLPGYPDN 269 (376)
T ss_pred eecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHhhcCCCCCcc
Confidence 34555555444444444 779999999999999999999965 47899999988776 6666656678999
Q ss_pred EEEecCCCeEEEE
Q psy8875 639 LTLDLVQRRLYWV 651 (734)
Q Consensus 639 lavD~~~~~LYw~ 651 (734)
|..+ .+|. ||+
T Consensus 270 IR~~-~~G~-fWV 280 (376)
T KOG1520|consen 270 IRRD-STGH-FWV 280 (376)
T ss_pred eeEC-CCCC-EEE
Confidence 9998 4444 344
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.59 E-value=7.5e-06 Score=80.93 Aligned_cols=204 Identities=11% Similarity=0.079 Sum_probs=137.2
Q ss_pred ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 499 VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 499 ~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
+.....|..|+.++ .+.+++++...+.|-+.+...|...++-+. .-..|.+|.+++ .+..+++|.+. .|.|++...
T Consensus 58 vp~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg-~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt 133 (353)
T COG4257 58 VPNGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLG-SGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKT 133 (353)
T ss_pred cCCCCCccccccCC-CCceEEecCccccceecCCCCCceEEEecC-CCCCCceEEECC-CCCeeEecCcc-eeEEecCcc
Confidence 34556777787775 688999999999999999887776666665 446899999995 57889999876 888887643
Q ss_pred CceEEE-E--cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875 579 TMRKVL-V--RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 579 ~~~~~l-~--~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
...+.. + +..-.+-...++|+ .|.|+||... +.-.|.+..-...++.-...-..|+||.+. .++.||++....
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~--G~yGrLdPa~~~i~vfpaPqG~gpyGi~at-pdGsvwyaslag 209 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQI--GAYGRLDPARNVISVFPAPQGGGPYGICAT-PDGSVWYASLAG 209 (353)
T ss_pred cceEEeecccccCCCcccceeeCC-CccEEEeecc--ccceecCcccCceeeeccCCCCCCcceEEC-CCCcEEEEeccc
Confidence 333322 1 11223445678886 6889888732 222233333222333333344679999996 688999999888
Q ss_pred CeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCC
Q psy8875 656 NEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
+.|-+++.-....+++..-...-..-..|-. .-++++.|+|++++++++++.+-.
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 9999999544455444432111122233444 458999999999999999886554
No 42
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.58 E-value=1.4e-05 Score=80.72 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=140.7
Q ss_pred ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC----CCce--EEEEeC-----CCCCccceeeeccCC--------
Q psy8875 499 VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE----GSER--TVVIEE-----DKTIADGLAVDWIYS-------- 559 (734)
Q Consensus 499 ~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~----g~~~--~~~~~~-----~~~~p~glAvD~~~~-------- 559 (734)
-+++.++.+|++.+ .+.+|++|..++.....+.+. +... .+.+.. ....|.|+.+.-...
T Consensus 19 Dp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 19 DPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred CccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 35788999999987 557777777776655554430 1111 222221 234788888873322
Q ss_pred -----cEEEEeCCCCeEEEEeC--CCC---ceEEEEcC--CCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCce
Q psy8875 560 -----HIYWTDAHKNTIELANF--EGT---MRKVLVRS--YLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSHR 625 (734)
Q Consensus 560 -----~lY~td~~~~~I~~~~l--dG~---~~~~l~~~--~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~~ 625 (734)
.||.++. ++|.-.+. +-. ...+++.. ...--+||||-.. ..+||-+|.. +++|.+.+ ++-+
T Consensus 98 ~~~a~Fif~tEd--GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVFd--~~f~ 172 (336)
T TIGR03118 98 TGPSRFLFVTED--GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVFK--GSFR 172 (336)
T ss_pred ccceeEEEEeCC--ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEec--Cccc
Confidence 2444443 55555443 212 11233322 2344578888744 5799999985 68898864 4444
Q ss_pred EEEEEcC--------CCCceeEEEecCCCeEEEEe-------------CCCCeEEEEecCCCceEEEEcCCCCCCCCeEE
Q psy8875 626 NMVIVSD--------IKWPNGLTLDLVQRRLYWVD-------------AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSI 684 (734)
Q Consensus 626 ~~lv~~~--------l~~P~glavD~~~~~LYw~D-------------~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl 684 (734)
++.+... -.-|.+|.. .+++||++= .+.+.|..++++|.-.+.+.+. ..|..|.||
T Consensus 173 ~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~LNaPWG~ 249 (336)
T TIGR03118 173 PPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GRLNAPWGL 249 (336)
T ss_pred cccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-CcccCCcee
Confidence 3322211 134666664 589999983 2345899999999988887654 679999999
Q ss_pred EE-------ECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 685 ST-------FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 685 ~v-------~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
++ +.+.|.+-+.+.++|..++..+|+.+-.|... -.+|+.|+
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~--~G~pi~i~ 298 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP--DNHPVKVD 298 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC--CCCeEEec
Confidence 98 46899999999999999999899887777643 34555554
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.58 E-value=8.7e-06 Score=80.49 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=152.3
Q ss_pred eeeeee--ccceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCcc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIAD 550 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~ 550 (734)
.+.|+. .+.|-+++....+...+ +....+|.+|.+.+ .+..+++|... .|.|++.......+.-+. ..-.+.+
T Consensus 74 ~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nle 151 (353)
T COG4257 74 AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLE 151 (353)
T ss_pred ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCccc
Confidence 344543 34567777665555544 34667899999986 67888898766 899988764444433332 1223445
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
...+| ..++|+||... +.--+.+......++.-......|.||.+.| +|.||++... ...|.+++.-....+++..
T Consensus 152 t~vfD-~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyasla-gnaiaridp~~~~aev~p~ 227 (353)
T COG4257 152 TAVFD-PWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLA-GNAIARIDPFAGHAEVVPQ 227 (353)
T ss_pred ceeeC-CCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEecc-ccceEEcccccCCcceecC
Confidence 66788 56889999763 3333555554555555556678999999997 6889988754 3578787764334444432
Q ss_pred -cC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEecc
Q psy8875 631 -SD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 631 -~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~ 707 (734)
+. -.--+.|..| ..++++.+++.++++.+++..-+.=.... -+..-.+|.+|-| ..++++.+|+..+.|.|+++.
T Consensus 228 P~~~~~gsRriwsd-pig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea~agai~rfdpe 305 (353)
T COG4257 228 PNALKAGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPE 305 (353)
T ss_pred CCcccccccccccC-ccCcEEEeccCCceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeeccccCceeecCcc
Confidence 11 1223445666 57789999999999999997655422221 1344578999999 468888889999999999987
Q ss_pred CCCceEEE
Q psy8875 708 TGDNLTAI 715 (734)
Q Consensus 708 ~G~~~~~l 715 (734)
+-+ .+++
T Consensus 306 ta~-ftv~ 312 (353)
T COG4257 306 TAR-FTVL 312 (353)
T ss_pred cce-EEEe
Confidence 554 3444
No 44
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.55 E-value=7.6e-08 Score=90.02 Aligned_cols=69 Identities=36% Similarity=0.689 Sum_probs=59.0
Q ss_pred CCceecCCC-ce-ecCcCccCCCCCCCCCCcccccccCcccCCceeccCCC--CeeeCCCCCCCCCCC---CCCCCCc
Q psy8875 57 STMFRCTGG-MC-IPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP--GECVPLTWMCDDNPD---CSDGSDE 127 (734)
Q Consensus 57 ~~~f~C~~g-~C-i~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~--~~Ci~~~~~Cdg~~d---C~dg~de 127 (734)
.+.|+|.+| .= |+.+++.|++.||+|||||.. +..|+...|.|.|.. ..-||.++|-||+.| |=|||||
T Consensus 35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG--TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG--TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred CCceEecCCCCceecHHHccCcceeCCCCCCccc--cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence 467999987 34 899999999999999999973 235777899999872 267999999999999 9999999
No 45
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.54 E-value=4.6e-08 Score=65.93 Aligned_cols=32 Identities=63% Similarity=1.312 Sum_probs=30.0
Q ss_pred cccccCcCCCCceEeCccccCCCCCCCCCCCC
Q psy8875 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166 (734)
Q Consensus 135 C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde 166 (734)
|...+|+|.++.||+..++|||..||+||+||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 56679999999999999999999999999998
No 46
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.52 E-value=1.2e-05 Score=88.22 Aligned_cols=166 Identities=16% Similarity=0.229 Sum_probs=112.9
Q ss_pred ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-----EE-eCCCCCccceeeecc------CCcE
Q psy8875 494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-----VI-EEDKTIADGLAVDWI------YSHI 561 (734)
Q Consensus 494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-----~~-~~~~~~p~glAvD~~------~~~l 561 (734)
..+.++.++..|.+|++.+ .++||+++...++|+++...++....+ ++ ..+...+.|||+++. ++.|
T Consensus 21 ~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 3456778899999999987 578999987679999987653332211 11 113456789999854 4678
Q ss_pred EEEeC---------CCCeEEEEeCCCC-----ceEEEEcC----CCCCceeEEEeCCCCeEEEEecC-------------
Q psy8875 562 YWTDA---------HKNTIELANFEGT-----MRKVLVRS----YLDEPRSLALNPIDGWMYWSDWG------------- 610 (734)
Q Consensus 562 Y~td~---------~~~~I~~~~ldG~-----~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~------------- 610 (734)
|++-. ...+|.|+.++.. ..++|+.. ....-..|+++| .|+||++--.
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcc
Confidence 98842 1457888877532 23344422 123456899998 5789997411
Q ss_pred ------------------CCceEEEeccCCCc----------eEEEEEcCCCCceeEEEecCCCeEEEEeCCC---CeEE
Q psy8875 611 ------------------QNAKIERAGMDGSH----------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL---NEIS 659 (734)
Q Consensus 611 ------------------~~~~I~~~~ldG~~----------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~---~~I~ 659 (734)
..++|.|++.||+. +..|....+..|.||++|+ +++||.+|.+. ..|.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~~~DEiN 257 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPNSDDELN 257 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCCCCcEEE
Confidence 12389999999973 3346677889999999997 89999999654 3444
Q ss_pred EEe
Q psy8875 660 SCD 662 (734)
Q Consensus 660 ~~~ 662 (734)
++.
T Consensus 258 ~I~ 260 (454)
T TIGR03606 258 IIV 260 (454)
T ss_pred Eec
Confidence 443
No 47
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=0.00014 Score=80.55 Aligned_cols=232 Identities=9% Similarity=-0.001 Sum_probs=144.6
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCe-EEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGM-IFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~-lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
.+|+.++.+|.+...+..+. ......|.+..++ +|++... ...|+.+++.+|.. +.+.. ........++.+.++
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEec-CCCcEEeeEECCCCC
Confidence 47888888998877666653 5567788887775 7766554 46799999985543 33332 111122344555677
Q ss_pred cEEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875 560 HIYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 560 ~lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
+|+++... ...|+++++++...+.|..... .-....+.|...+|||+.. +....|++++++|...+.+.......
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~- 323 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN- 323 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC-
Confidence 78777543 4689999998877665543221 1223457777777877753 34469999999987775554433222
Q ss_pred eeEEEecCCCeEEEEeCCC--------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEec
Q psy8875 637 NGLTLDLVQRRLYWVDAKL--------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANK 706 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~~~--------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~ 706 (734)
.++++.+++|.++.... ..|+.+++++...+.|... .....| ..+..+..|+++... ...|..++.
T Consensus 324 --~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p-~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 324 --SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFP-RFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred --ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCe-EECCCCCEEEEEEccCCcEEEEEEec
Confidence 37888888888875432 4899999998877766543 222222 344467778777543 334666654
Q ss_pred cCCCceEEEec-ccccCCC
Q psy8875 707 FTGDNLTAITG-VHQTHEP 724 (734)
Q Consensus 707 ~~G~~~~~l~~-~~~l~~P 724 (734)
+|.....|.. ...++.|
T Consensus 400 -~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 400 -NYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred -CCCeeEEeecCCCccCCC
Confidence 6665555543 2234444
No 48
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=7.7e-05 Score=83.54 Aligned_cols=227 Identities=10% Similarity=0.059 Sum_probs=144.7
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.++.+|.+...+...........|.+..++|+|+.... ..|+.+++.++.. +.+.. ........++.+.++.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~-~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTS-FPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecC-CCCCcCCeeECCCCCEE
Confidence 45556777777766665555556788998888898875443 4699999885543 33322 11223456777778888
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++... ...|++.++++...+.+.. ........++.|...+|+++.. +....|+++++++...+.+... ..+..+
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC-CCCCcC
Confidence 886443 3469999998776655543 2234456778887778877653 3346899999986655444322 223345
Q ss_pred EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC--ceEEEeccCCCceEE
Q psy8875 639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK--AIYKANKFTGDNLTA 714 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~--~v~~~~~~~G~~~~~ 714 (734)
.++.+.++.||++.... ..|+.+++++...+.+... .....| +.+..+..|+++....+ .|+.++. +|+..+.
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 68888888999886433 3788899988776655432 112234 34556778888665433 3666654 7777776
Q ss_pred Eec
Q psy8875 715 ITG 717 (734)
Q Consensus 715 l~~ 717 (734)
+..
T Consensus 432 l~~ 434 (448)
T PRK04792 432 LPA 434 (448)
T ss_pred CcC
Confidence 643
No 49
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00013 Score=81.73 Aligned_cols=226 Identities=10% Similarity=0.084 Sum_probs=144.3
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.++.++.+...+..........+|.+..++|+++... ...|+..++.+|.. +.+.. ......+.++.+.+++|
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~-~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN-FPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec-CCCcccCcEECCCCCEE
Confidence 6777778888877776666667888999888888887543 45799999885543 33322 22233466777778888
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++-.. ...|+++++++...+.|... .......++.|...+|+++. ......|++.+++|...+.+.... ..-..
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~ 338 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYST 338 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccC
Confidence 776543 45699999988766555432 22345577788777776654 333468999999987666554332 12234
Q ss_pred EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-----CceEEEeccCCCc
Q psy8875 639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-----KAIYKANKFTGDN 711 (734)
Q Consensus 639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-----~~v~~~~~~~G~~ 711 (734)
+++.+.+++|+++... ...|..++++|+..+.+... .....| ..+-.+..||++-... ..|+.++. +|..
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl-~g~~ 415 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FLVEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDL-TGRN 415 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CCCCCC-eECCCCCEEEEEEccCCCCCcceEEEEEC-CCCc
Confidence 6787888899887643 34789999988776655432 111222 2333567787764322 36888876 4544
Q ss_pred eEEEe
Q psy8875 712 LTAIT 716 (734)
Q Consensus 712 ~~~l~ 716 (734)
.+.|.
T Consensus 416 ~~~l~ 420 (435)
T PRK05137 416 EREVP 420 (435)
T ss_pred eEEcc
Confidence 55554
No 50
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=7.9e-05 Score=83.27 Aligned_cols=226 Identities=11% Similarity=0.124 Sum_probs=142.6
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.++.++.+...+..........+|.+..++|+++.... ..|++.++.++.. +.+.. .......+++.+.+++|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~-~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVAS-FRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEecc-CCCCccCceECCCCCEE
Confidence 46667777777776665545567788988888888876443 4699999985543 33322 11223456777778888
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++-.. ...|++.++++...+.+.. ........++.|...+|+++. ......|++.++++...+.+.... .....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~ 340 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNAR 340 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccC
Confidence 876443 4479999998776555442 222335678888777777664 333467999998776554443222 33446
Q ss_pred EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC--CCCceEEEeccCCCceEE
Q psy8875 639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW--QQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~--~~~~v~~~~~~~G~~~~~ 714 (734)
+++.+.++.|+++.... ..|+.+++++...+.+... .....| ..+..+..|+++.. +...|+.++. +|...+.
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~-~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~ 417 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG-SLDESP-SFAPNGSMVLYATREGGRGVLAAVST-DGRVRQR 417 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 78888889999886432 3689999887776654332 122223 23335667777654 3446777765 5655555
Q ss_pred Ee
Q psy8875 715 IT 716 (734)
Q Consensus 715 l~ 716 (734)
|.
T Consensus 418 l~ 419 (433)
T PRK04922 418 LV 419 (433)
T ss_pred cc
Confidence 54
No 51
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.44 E-value=1.8e-05 Score=80.29 Aligned_cols=181 Identities=12% Similarity=0.078 Sum_probs=109.3
Q ss_pred CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--C
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--G 622 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G 622 (734)
-...+.||++++.++.||.+......|...+++|...+.+--.+...|.||++- .++.+..++ .....|.....+ +
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~-Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSE-ERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEE-TTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEE-cCCCcEEEEEEeccc
Confidence 345689999999999999998889999999999998877766778899999995 345555555 334677766663 2
Q ss_pred Cc--eEEE--EEcCC-----CCceeEEEecCCCeEEEEeCCC-CeEEEEec--CCCceEEEEc-----CCCCCCCCeEEE
Q psy8875 623 SH--RNMV--IVSDI-----KWPNGLTLDLVQRRLYWVDAKL-NEISSCDY--NGGNRRLVLY-----SPQTLSHPFSIS 685 (734)
Q Consensus 623 ~~--~~~l--v~~~l-----~~P~glavD~~~~~LYw~D~~~-~~I~~~~~--dG~~~~~i~~-----~~~~~~~P~gl~ 685 (734)
.. +..+ +.-.+ ....|||+|+.+++||++.-+. ..|+.++. .+....+... ....+..|.+|+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 22 1111 11111 1247999999999999995433 36777775 2333322221 123456789999
Q ss_pred EE--CCEEEEEeCCCCceEEEeccCCCceEEEeccc-------ccCCCccCC
Q psy8875 686 TF--EDWLYWSDWQQKAIYKANKFTGDNLTAITGVH-------QTHEPLNSP 728 (734)
Q Consensus 686 v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~-------~l~~P~~i~ 728 (734)
+. .++||+....+..|..++ .+|+.+..+.... .+++|=+|+
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEE
Confidence 95 579999999999999998 6888777665332 356676664
No 52
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=3.5e-05 Score=77.49 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=136.3
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEE-eCCCCeEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWT-DAHKNTIELANFEGT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~t-d~~~~~I~~~~ldG~ 579 (734)
.....+|.|++.+++||-+--....|..+++. |.. +++-+ .++..|++|++ ++++.|+. |....++++..++-.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL-~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPL-TGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecc-cccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCC
Confidence 34577899999999999887667789999888 444 44444 47889999886 56666664 555777877776544
Q ss_pred ceEEEEc----------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc----C----CCCceeEEE
Q psy8875 580 MRKVLVR----------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS----D----IKWPNGLTL 641 (734)
Q Consensus 580 ~~~~l~~----------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~----~----l~~P~glav 641 (734)
.....+. +.-..-.|+|-||.+++||++-..+.-.|+...+.-....+-+.. . +.-..||.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2222111 112345699999999999999866666788777543222211111 0 234568999
Q ss_pred ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC------CCCCCCCeEEEE-ECCEEEEEeCCCCceEEEec
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS------PQTLSHPFSIST-FEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~------~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~ 706 (734)
|..++.|++-....+.|..++.+|.-+..+.-. ...+++|-||+. .+|.||++.-- +..+++.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP-nlfy~F~~ 311 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP-NLFYRFTP 311 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC-Ccceeccc
Confidence 999999999988889999999999865544221 134678899999 56888887543 44555543
No 53
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.38 E-value=3.3e-07 Score=85.76 Aligned_cols=76 Identities=38% Similarity=0.722 Sum_probs=62.2
Q ss_pred CCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCCC----ceEeCccccCCCCC---CCCCCCCCC
Q psy8875 96 QEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNN----RCIPNHWQCDGEFD---CSDKSDEDP 168 (734)
Q Consensus 96 ~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~d---C~dgsde~~ 168 (734)
...|+|-+++..=|+...+.|+..||+|||||.. ...|+...|.|.|. .-||.+++=||..| |=|||||..
T Consensus 35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG--TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~ 112 (176)
T PF12999_consen 35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG--TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESG 112 (176)
T ss_pred CCceEecCCCCceecHHHccCcceeCCCCCCccc--cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCC
Confidence 3569999875444999999999999999999973 12466678999874 78999999999999 999999965
Q ss_pred CCccC
Q psy8875 169 EMCNG 173 (734)
Q Consensus 169 ~~C~~ 173 (734)
..|++
T Consensus 113 ~~C~N 117 (176)
T PF12999_consen 113 GKCPN 117 (176)
T ss_pred CCCcc
Confidence 44443
No 54
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=0.00033 Score=78.07 Aligned_cols=227 Identities=9% Similarity=0.072 Sum_probs=145.5
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.++.+|.+...+..........+|.+...+|.|+... ...|+..++.+|..+ .+.. .......+++.+.++.|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~-~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccC-CCCCcCCeEECCCCCEE
Confidence 5788888888877776655567788999988888776543 346888888855433 3322 11233467888888889
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEE-ecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWS-DWGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwt-d~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++... ...|+++++++...+.+... .......++.|...+|+++ +.+....|++.++++...+.+.. .......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccC
Confidence 987543 34699999987766555433 2345677888877777555 43334689999998876555432 2223345
Q ss_pred EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-Cc-eEEEeccCCCceEE
Q psy8875 639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-KA-IYKANKFTGDNLTA 714 (734)
Q Consensus 639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-~~-v~~~~~~~G~~~~~ 714 (734)
+++.+.+++|+++... ...|+.+++++...+.+... .....| .++-++..|+++.... .. |+.++ .+|+..+.
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p-~~SpDG~~i~~~s~~~~~~~l~~~~-~~G~~~~~ 412 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETP-SIAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKAR 412 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCc-eECCCCCEEEEEEcCCCceEEEEEE-CCCCCeEE
Confidence 7788778888887543 34688899888776655432 111222 3444667777766533 23 44444 47777666
Q ss_pred Eec
Q psy8875 715 ITG 717 (734)
Q Consensus 715 l~~ 717 (734)
|..
T Consensus 413 l~~ 415 (429)
T PRK03629 413 LPA 415 (429)
T ss_pred Ccc
Confidence 653
No 55
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.36 E-value=9.9e-07 Score=63.61 Aligned_cols=42 Identities=36% Similarity=0.742 Sum_probs=38.0
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR 668 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~ 668 (734)
+++...+..|+|||+|+.+++|||+|+..+.|++++++|+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 456678999999999999999999999999999999999763
No 56
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.33 E-value=0.00037 Score=77.43 Aligned_cols=227 Identities=11% Similarity=0.105 Sum_probs=143.0
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.++.++.....+..........+|.+..++|+|+.... ..|+..++.++.. ..+.. .......+++.+.++.|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~-~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVAS-FPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeec-CCCCccceEECCCCCEE
Confidence 47777777777777765444566778998889999886543 5688888875433 22222 22234457777777788
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
|++... ...|++.++++...+.+... .......++.|...+|+|+. .+....|++.++++...+.+.. .......
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~ 326 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNAS 326 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccC
Confidence 887543 34699999987665555422 12233456777667787764 3334689999998776554432 2334556
Q ss_pred EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC-ceEEEeccCCCceEEE
Q psy8875 639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK-AIYKANKFTGDNLTAI 715 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~-~v~~~~~~~G~~~~~l 715 (734)
+++.+.+++|+++.... .+|+.+++++...+.+... .....| .++..+++|+++....+ .++.+...+|+....+
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 78888888899887543 4789999888666555432 222223 34446778888765432 3444555667665555
Q ss_pred e
Q psy8875 716 T 716 (734)
Q Consensus 716 ~ 716 (734)
.
T Consensus 405 ~ 405 (417)
T TIGR02800 405 P 405 (417)
T ss_pred C
Confidence 3
No 57
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.00035 Score=78.02 Aligned_cols=226 Identities=12% Similarity=0.137 Sum_probs=141.6
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.++.++.+...+...........|.+..++|+++.... ..|++.++++|..+ .+.. ........++.+.+++|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~-~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITN-FEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccC-CCCCcCCeEECCCCCEE
Confidence 36666777777766665555567788998888888765443 46999999855433 3221 11223356777777888
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++-.. ...|++.++++...+.+.. ........++.|...+||++. ......|++.++++...+.+.... .....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccc
Confidence 876543 3479999998876655542 222344567777777777764 333468999998776655443222 22234
Q ss_pred EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC--CceEEEeccCCCceEE
Q psy8875 639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ--KAIYKANKFTGDNLTA 714 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~--~~v~~~~~~~G~~~~~ 714 (734)
.++.+.++.|+++.... ..|+.+++.+...+.+... .....| .++..+..|+++.... ..|+.++. +|.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~ 412 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESP-SVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLP 412 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 57778889999886433 3688999888776665432 122233 3444677888876543 45666654 5665555
Q ss_pred Ee
Q psy8875 715 IT 716 (734)
Q Consensus 715 l~ 716 (734)
+.
T Consensus 413 l~ 414 (430)
T PRK00178 413 LP 414 (430)
T ss_pred Cc
Confidence 54
No 58
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.32 E-value=0.00019 Score=77.86 Aligned_cols=245 Identities=11% Similarity=0.033 Sum_probs=131.4
Q ss_pred eeeeee-ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC----CCc-
Q psy8875 476 SLLFAR-KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK----TIA- 549 (734)
Q Consensus 476 ~l~~~~-~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~----~~p- 549 (734)
++|+++ +..|..+++.......-+.....+.++++.+..+.||.++...+.+..++.........+-.... ..+
T Consensus 50 ~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 50 YLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESR 129 (369)
T ss_dssp EEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---
T ss_pred EEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCC
Confidence 455555 35688888887776655666678999999988999999999999999888764333333221111 112
Q ss_pred -cceeeeccCCcEEEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE
Q psy8875 550 -DGLAVDWIYSHIYWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627 (734)
Q Consensus 550 -~glAvD~~~~~lY~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~ 627 (734)
.+|.-.+.....+++-...++|.+++.... ...+-.......|.+..+||..++++.+..+ ..+|..+++.......
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-SNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-GTEEEEEETTTTEEEE
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-cceeEEEeeccceEEE
Confidence 244333333334445566799999987543 2222222345678999999987777776432 2344444433222111
Q ss_pred EEE------------------------------------cC------------------CCCceeEEEecCCCeEEEE--
Q psy8875 628 VIV------------------------------------SD------------------IKWPNGLTLDLVQRRLYWV-- 651 (734)
Q Consensus 628 lv~------------------------------------~~------------------l~~P~glavD~~~~~LYw~-- 651 (734)
++. .. ...|..+...+.+.+||+.
T Consensus 209 ~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 209 LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T
T ss_pred EeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc
Confidence 111 00 1123334444444444443
Q ss_pred -eCCCCeEEEEecCCCceEEEEcCC-CCCCCCeEEEE--ECCEEEEEeCCCC-ceEEEeccCCCceEEEecccccCCCcc
Q psy8875 652 -DAKLNEISSCDYNGGNRRLVLYSP-QTLSHPFSIST--FEDWLYWSDWQQK-AIYKANKFTGDNLTAITGVHQTHEPLN 726 (734)
Q Consensus 652 -D~~~~~I~~~~~dG~~~~~i~~~~-~~~~~P~gl~v--~~~~lywtd~~~~-~v~~~~~~~G~~~~~l~~~~~l~~P~~ 726 (734)
....+.|..++...- +++..-. .....+..+.+ .+.+||++.|..+ +|..++..+.+..+.|. +..|.+
T Consensus 289 ~~~~~~~v~viD~~tl--~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~----~~tP~G 362 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTL--KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP----VPTPTG 362 (369)
T ss_dssp T-SSHT-EEEEECCGT--EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE------SEEE
T ss_pred CCCCCceEEEEECcCc--ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE----eeCCCe
Confidence 244556777665543 2222100 00112555666 5789999999988 99999998888888887 556655
Q ss_pred C
Q psy8875 727 S 727 (734)
Q Consensus 727 i 727 (734)
+
T Consensus 363 ~ 363 (369)
T PF02239_consen 363 K 363 (369)
T ss_dssp E
T ss_pred E
Confidence 4
No 59
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.28 E-value=0.00011 Score=80.65 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=103.8
Q ss_pred EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE------c-CCCCCceeEEEeCC------CCeEEEEe
Q psy8875 542 IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV------R-SYLDEPRSLALNPI------DGWMYWSD 608 (734)
Q Consensus 542 ~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~------~-~~l~~P~~iavD~~------~g~LYwtd 608 (734)
+..++..|.+|++.+ .++||+++...++|.+++..+...+.+. . .....+.+||++|. +++||++-
T Consensus 25 va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 25 LLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 445899999999986 4689999987789999876554333221 1 13566789999965 46888884
Q ss_pred cC--------CCceEEEeccCCC-----ceEEEEEcC----CCCceeEEEecCCCeEEEEeCC-----------------
Q psy8875 609 WG--------QNAKIERAGMDGS-----HRNMVIVSD----IKWPNGLTLDLVQRRLYWVDAK----------------- 654 (734)
Q Consensus 609 ~~--------~~~~I~~~~ldG~-----~~~~lv~~~----l~~P~glavD~~~~~LYw~D~~----------------- 654 (734)
.. ...+|.|..++.. ..++|+... .+.-..|++++ .++||++-..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~ 182 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQH 182 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhcc
Confidence 21 1358988887632 234444321 23445788885 5689997321
Q ss_pred ---------------CCeEEEEecCCCc----------eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCC
Q psy8875 655 ---------------LNEISSCDYNGGN----------RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQK 699 (734)
Q Consensus 655 ---------------~~~I~~~~~dG~~----------~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~ 699 (734)
.++|.|++.||+- +..|.+ -.+.+|++|++. .+.||.+|.+..
T Consensus 183 ~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA--~G~RNp~Gla~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 183 TPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT--YGHRNPQGLAFTPDGTLYASEQGPN 251 (454)
T ss_pred ccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE--EeccccceeEECCCCCEEEEecCCC
Confidence 2379999999872 223333 236889999994 789999997753
No 60
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.26 E-value=6.2e-05 Score=78.70 Aligned_cols=153 Identities=16% Similarity=0.254 Sum_probs=96.4
Q ss_pred CcceEEEeeeccC-----CeEEEEEeCCCcEEEEecCCCCceEEEEeCC------------------CCCccceeeecc-
Q psy8875 502 TKSATAIDFVFRT-----GMIFWSDISEKKIYKAPIDEGSERTVVIEED------------------KTIADGLAVDWI- 557 (734)
Q Consensus 502 ~~~~~~i~~d~~~-----~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~------------------~~~p~glAvD~~- 557 (734)
......|.+|... +.+|++|.....|..+++..+....++.... .....|||+.+.
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~ 139 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS 139 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence 3455666777643 5899999988888888887654433332211 112446777663
Q ss_pred --CCcEEEEeCCCCeEEEEeCC----CC---------ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 558 --YSHIYWTDAHKNTIELANFE----GT---------MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 558 --~~~lY~td~~~~~I~~~~ld----G~---------~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
++.|||.-....+++++... .. ..+.+. .......|+++|+ +|.||+++.. ..+|.+.+.++
T Consensus 140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w~~~~ 216 (287)
T PF03022_consen 140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDP-NGNLYFTDVE-QNAIGCWDPDG 216 (287)
T ss_dssp TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEET-TTEEEEEECC-CTEEEEEETTT
T ss_pred CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECC-CCcEEEecCC-CCeEEEEeCCC
Confidence 35799999887888887541 11 112222 2224568999998 8999999975 58999999998
Q ss_pred ----CceEEEEE-cC-CCCceeEEEec-CCCeEEEEeCCCCe
Q psy8875 623 ----SHRNMVIV-SD-IKWPNGLTLDL-VQRRLYWVDAKLNE 657 (734)
Q Consensus 623 ----~~~~~lv~-~~-l~~P~glavD~-~~~~LYw~D~~~~~ 657 (734)
.+..+++. .. +.||.+|+|+. ..+.||+.....++
T Consensus 217 ~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 217 PYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp SB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--S
T ss_pred CcCccchheeEEcCceeeccceeeeccccCceEEEEECcchH
Confidence 34444444 45 89999999983 26899998755443
No 61
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00061 Score=75.82 Aligned_cols=228 Identities=9% Similarity=0.084 Sum_probs=134.1
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCe---EEEEEeC-CCcEEEEecCCCCceEEEEeCCCCCccceeeeccC
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGM---IFWSDIS-EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY 558 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~---lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~ 558 (734)
..|+.++.+|.+...|.........-+|.|.... +|++... ...|+.+++++|..+.+. . ........++.+.+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~-~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A-LQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-c-CCCCccceEECCCC
Confidence 3688888888887777554333344577776554 3344432 357999999966544333 2 12233456777778
Q ss_pred CcEEEEeCC--CCeEEEE--eCCC---CceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCc-eEEEE
Q psy8875 559 SHIYWTDAH--KNTIELA--NFEG---TMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSH-RNMVI 629 (734)
Q Consensus 559 ~~lY~td~~--~~~I~~~--~ldG---~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~-~~~lv 629 (734)
++|.|+-.. ...|++. ++++ ...+.+...........++.|...+|+|+. ......|+++++++.. ....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 888887643 3356554 3332 223334433223345668888777777764 3334689998886432 22223
Q ss_pred EcCCCCceeEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC--CCCceEE
Q psy8875 630 VSDIKWPNGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW--QQKAIYK 703 (734)
Q Consensus 630 ~~~l~~P~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~--~~~~v~~ 703 (734)
..........++.+.+++|+++... ...|+.+++++...+.+.... .....+++ .+..|+++.. +...|+.
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEE
Confidence 2222233467788888889887543 357999999888777665421 12233444 5567777643 3456888
Q ss_pred EeccCCCceEEE
Q psy8875 704 ANKFTGDNLTAI 715 (734)
Q Consensus 704 ~~~~~G~~~~~l 715 (734)
++..+++...+.
T Consensus 400 vdl~~g~~~~Lt 411 (428)
T PRK01029 400 ISLITKKTRKIV 411 (428)
T ss_pred EECCCCCEEEee
Confidence 887666554443
No 62
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.25 E-value=4.8e-06 Score=69.79 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=57.0
Q ss_pred eeEEEeCCCCeEEEEecCC----------------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 593 RSLALNPIDGWMYWSDWGQ----------------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 593 ~~iavD~~~g~LYwtd~~~----------------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
++|+|++..|.|||||.+. .++|.+.++.....++++ .+|..||||++.+.+..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc
Confidence 4789998889999999532 468999999887666555 56999999999999999999999999
Q ss_pred eEEEEecCCC
Q psy8875 657 EISSCDYNGG 666 (734)
Q Consensus 657 ~I~~~~~dG~ 666 (734)
+|.++-+.|.
T Consensus 80 Ri~rywl~Gp 89 (89)
T PF03088_consen 80 RILRYWLKGP 89 (89)
T ss_dssp EEEEEESSST
T ss_pred eEEEEEEeCC
Confidence 9999988773
No 63
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.23 E-value=0.00034 Score=74.54 Aligned_cols=198 Identities=13% Similarity=0.187 Sum_probs=121.2
Q ss_pred CCeEEEEEeC----CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC---------CCCeEEEEeCCCCc
Q psy8875 514 TGMIFWSDIS----EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA---------HKNTIELANFEGTM 580 (734)
Q Consensus 514 ~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~---------~~~~I~~~~ldG~~ 580 (734)
..++|++|.. .++|+.++.+.+.... .+. .-..|+++ +.+.++.||++.. ..+.|.++++....
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g-~i~-~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLG-MTD-GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEE-EEE-ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 5678888876 3788888877433222 233 23578887 9999999999999 78899999886543
Q ss_pred eE-EEEcC------CCCCceeEEEeCCCCeEEEEecCCCceEEEecc------------------------------CCC
Q psy8875 581 RK-VLVRS------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM------------------------------DGS 623 (734)
Q Consensus 581 ~~-~l~~~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l------------------------------dG~ 623 (734)
.. .|... ....|..+++.|...+||++++.....+.++++ ||+
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCc
Confidence 32 22211 144566999999988999988552233333332 333
Q ss_pred ceE---------EEEEcCC---------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEE-----cCCC--CC
Q psy8875 624 HRN---------MVIVSDI---------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVL-----YSPQ--TL 678 (734)
Q Consensus 624 ~~~---------~lv~~~l---------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~-----~~~~--~~ 678 (734)
... .+....+ ..| ++....++++|+... +.|+.+++.+....... .... ..
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 333 1111111 223 222335677777766 99999998765433221 1100 01
Q ss_pred CCCeE---EEE--ECCEEEEEe-C--------CCCceEEEeccCCCceEEEecc
Q psy8875 679 SHPFS---IST--FEDWLYWSD-W--------QQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 679 ~~P~g---l~v--~~~~lywtd-~--------~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
-.|-| +++ .+++||++. . ..+.|+.++..+++.+..|...
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG 298 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG 298 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC
Confidence 13433 555 689999953 2 2258999999888888877643
No 64
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.00077 Score=75.13 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=140.4
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+.++.++.....+..........+|.+..++|+++.... ..|+..++.+|.. ..+.. ........++.+.+++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~-~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVAN-FKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeec-CCCCccceEECCCCCE
Confidence 357777788877666655555566788998888888776433 4699999985543 33322 1123346777777888
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++-.. ...|+++++++...+.+.. ........++.|...+|+++. .+....|++.++++...+.+.... ....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcC
Confidence 8876433 4578898888776555432 222334567888777777653 333468999988876554443222 2223
Q ss_pred eEEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEeccCCCceE
Q psy8875 638 GLTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANKFTGDNLT 713 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~~~G~~~~ 713 (734)
..++.+.++.|+++.... ..|+.+++++...+.+... .....| ..+-.+..|+++... ...|+.++. +|+...
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p-~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~ 408 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESP-SFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQ 408 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCc-eECCCCCEEEEEEecCCCEEEEEEEC-CCCceE
Confidence 467888888988876433 3689999887776655432 112222 233356677766432 234666654 677666
Q ss_pred EEe
Q psy8875 714 AIT 716 (734)
Q Consensus 714 ~l~ 716 (734)
.+.
T Consensus 409 ~l~ 411 (427)
T PRK02889 409 RLS 411 (427)
T ss_pred Eee
Confidence 664
No 65
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.21 E-value=6.8e-07 Score=54.54 Aligned_cols=24 Identities=50% Similarity=1.124 Sum_probs=22.9
Q ss_pred cceeecCCCcEecCCCCccccccC
Q psy8875 409 GYMCECNEGYKLSSNRHTCIDIDE 432 (734)
Q Consensus 409 ~~~C~C~~G~~l~~~~~~C~~~~e 432 (734)
||+|.|++||+|.+++++|.||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 699999999999999999999997
No 66
>KOG4260|consensus
Probab=98.21 E-value=1.3e-06 Score=85.20 Aligned_cols=145 Identities=28% Similarity=0.627 Sum_probs=82.0
Q ss_pred CeecCCcccCCCCCCCCCCCCCCCCCCCCCC-CceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy8875 276 NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTA-GQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFI 354 (734)
Q Consensus 276 ~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~-~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~ 354 (734)
.||..-.+| |++|.-+.+|. +|+. .+.+|.-.|.|--.+. ..+.-.| .|
T Consensus 123 lCvdqLkvC-----Cp~gtyGpdCl--~Cpggser~C~GnG~C~GdGs--------------------R~GsGkC---kC 172 (350)
T KOG4260|consen 123 LCVDQLKVC-----CPDGTYGPDCL--QCPGGSERPCFGNGSCHGDGS--------------------REGSGKC---KC 172 (350)
T ss_pred hhhhhheec-----cCCCCcCCccc--cCCCCCcCCcCCCCcccCCCC--------------------CCCCCcc---cc
Confidence 356666666 88888888876 2422 2334544344443211 1233344 45
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCccee-ecCCCcEecCCCCccccccCc
Q psy8875 355 PPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMC-ECNEGYKLSSNRHTCIDIDEC 433 (734)
Q Consensus 355 ~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C-~C~~G~~l~~~~~~C~~~~eC 433 (734)
.+||++..|. +|..+|.|..+.=..--|..=...|...|.- +..--| .|..||.|. ..-|.|||||
T Consensus 173 ~~GY~Gp~C~----------~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg-~~~k~C~kCkkGW~ld--e~gCvDvnEC 239 (350)
T KOG4260|consen 173 ETGYTGPLCR----------YCGIEYFESSRNEQHLVCTACHEGCLGVCSG-ESSKGCSKCKKGWKLD--EEGCVDVNEC 239 (350)
T ss_pred cCCCCCcccc----------ccchHHHHhhcccccchhhhhhhhhhcccCC-CCCCChhhhcccceec--ccccccHHHH
Confidence 5677666664 6677765543221111122111223323321 223334 588888884 6678888888
Q ss_pred CC-CCCc--ccceeccCCceEEecCCCeeeCCC
Q psy8875 434 ET-PGSC--SQICLNEKGGFKCECVAGYIKDPH 463 (734)
Q Consensus 434 ~~-~~~C--~~~C~n~~g~~~C~C~~gy~~~~~ 463 (734)
++ +.+| .|+|+|+.|||+|.+.+||....+
T Consensus 240 ~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d 272 (350)
T KOG4260|consen 240 QNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVD 272 (350)
T ss_pred hcCCCCCChhheeecCCCceEecccccccCChH
Confidence 64 4556 468899999999888888887544
No 67
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.19 E-value=1e-06 Score=63.10 Aligned_cols=40 Identities=38% Similarity=0.909 Sum_probs=33.9
Q ss_pred cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCcc
Q psy8875 388 GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTC 427 (734)
Q Consensus 388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C 427 (734)
|||||+.....|. +.|+|+.|+|+|.|++||++..+++.|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 5889998777886 699999999999999999977666554
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.17 E-value=0.0023 Score=65.23 Aligned_cols=227 Identities=15% Similarity=0.090 Sum_probs=130.0
Q ss_pred ccceEEeecCCCceEEEecC-CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIVNS-TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~-~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
...|+..++........... ...+..+.+.+..+.|+.+ ...+.|+..++..+.....+ ......+..+++.+. +.
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~ 106 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG-SSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPD-GR 106 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEE-cCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCC-CC
Confidence 34455555544333222222 2333478887655455544 34778888887744333222 222335667777754 56
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
++++....+.|.+.++........+......+..+++++...+|+... ..+.|...++........+.........|+
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184 (289)
T ss_pred EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc--CCCcEEEEEccccccceeEecCccccceEE
Confidence 666666678899999874333333333445688999998755555544 235677777653333323333333567888
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+.+.+..|+.+.. .+.|...++........+.. ......++++.. +.++++....+.|...+..+++....+.
T Consensus 185 ~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 185 FSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ECCCcCEEEEecC-CCcEEEEECCCCceecchhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 8866667766655 67888888765433322211 122455666644 5566665556777777766666555554
No 69
>KOG1219|consensus
Probab=98.16 E-value=2e-06 Score=103.71 Aligned_cols=107 Identities=26% Similarity=0.658 Sum_probs=80.5
Q ss_pred CCCCCceecCCC-CeecC---CcccCCCCCCCCCCCCCCCCC--CCCCCCceecCCCCccccccccccCCCCCCCCCCCC
Q psy8875 264 TCRSDEFTCANG-NCIQR---IWLCDGDDDCKDGSDEKSCQP--VKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPN 337 (734)
Q Consensus 264 ~C~~~~~~C~~g-~Ci~~---~~~Cdg~~dC~dgsDe~~C~~--~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~ 337 (734)
.|..++ |++| +|+.. .+.| .|+..+.+.+|+. .+|.+. +|.++++||+.
T Consensus 3866 ~C~~np--CqhgG~C~~~~~ggy~C----kCpsqysG~~CEi~~epC~sn--PC~~GgtCip~----------------- 3920 (4289)
T KOG1219|consen 3866 PCNDNP--CQHGGTCISQPKGGYKC----KCPSQYSGNHCEIDLEPCASN--PCLTGGTCIPF----------------- 3920 (4289)
T ss_pred ccccCc--ccCCCEecCCCCCceEE----eCcccccCcccccccccccCC--CCCCCCEEEec-----------------
Confidence 465544 9998 99876 7899 9999999999984 467665 89999999993
Q ss_pred CCCCCCCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCC
Q psy8875 338 ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEG 417 (734)
Q Consensus 338 ~~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G 417 (734)
.+.|.| .|+.||+|.+|... .++||..+.++-+..|+|++|+|.|.|.+|
T Consensus 3921 ------~n~f~C---nC~~gyTG~~Ce~~---------------------Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g 3970 (4289)
T KOG1219|consen 3921 ------YNGFLC---NCPNGYTGKRCEAR---------------------GISECSKNVCGTGGQCINIPGSFHCNCTPG 3970 (4289)
T ss_pred ------CCCeeE---eCCCCccCceeecc---------------------cccccccccccCCceeeccCCceEeccChh
Confidence 456777 55666666655432 266776655555678999999999999999
Q ss_pred cEecCCCCcccc
Q psy8875 418 YKLSSNRHTCID 429 (734)
Q Consensus 418 ~~l~~~~~~C~~ 429 (734)
| -+++|.+
T Consensus 3971 ~----~gr~c~~ 3978 (4289)
T KOG1219|consen 3971 I----LGRTCCA 3978 (4289)
T ss_pred H----hcccCcc
Confidence 9 4667743
No 70
>KOG4260|consensus
Probab=98.16 E-value=3.2e-06 Score=82.52 Aligned_cols=78 Identities=33% Similarity=0.794 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCc-cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCcCC-CCCc---ccceeccC
Q psy8875 375 DCPLMQDEDPTKC-GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSC---SQICLNEK 447 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~-~~~C---~~~C~n~~ 447 (734)
.|..|+.-+-..| |||||+..+..|. |.|+|+.|+|+|.+++||+. ++|+|+. ...| ...|+|+.
T Consensus 221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni~ 292 (350)
T KOG4260|consen 221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNID 292 (350)
T ss_pred hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccCC
Confidence 6778884433358 9999998888885 58999999999999999954 2566642 1223 23689999
Q ss_pred CceEEecCCCeee
Q psy8875 448 GGFKCECVAGYIK 460 (734)
Q Consensus 448 g~~~C~C~~gy~~ 460 (734)
++|+|.|..|+..
T Consensus 293 ~~~r~v~f~~~~~ 305 (350)
T KOG4260|consen 293 GQYRCVCFSGLII 305 (350)
T ss_pred ccEEEEeccccee
Confidence 9999999998765
No 71
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.00084 Score=74.29 Aligned_cols=192 Identities=8% Similarity=0.009 Sum_probs=125.8
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+.+++.+.....+........+.+|.+...+|.++... ...|+.++++++..+ .+.... ..-....+.+.+++
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~-~~d~~p~~SPDG~~ 290 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYP-GIDVNGNFVEDDKR 290 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCC-CccCccEECCCCCE
Confidence 46888888887777776543344556788878788776543 357999998855433 332211 11223456667888
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC------C-ceEEEeccCCCceEEEEEc
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ------N-AKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~------~-~~I~~~~ldG~~~~~lv~~ 631 (734)
|||+... ...|+++++++...+.+....... .++.|..++|.++.... . ..|+.+++++...+.|...
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 9888653 448999999887765554332222 37888888887776432 1 5899999988776655443
Q ss_pred CCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCC
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHP 681 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P 681 (734)
.. -...++.+.+++||++.. +...|..++++|.....+......+..|
T Consensus 368 ~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 368 GV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence 22 224678888888988864 3446999999998777775533344444
No 72
>KOG1219|consensus
Probab=98.08 E-value=4e-06 Score=101.18 Aligned_cols=83 Identities=27% Similarity=0.735 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccc--ccCcCCCCCcc--cceeccCCce
Q psy8875 375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID--IDECETPGSCS--QICLNEKGGF 450 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~--~~eC~~~~~C~--~~C~n~~g~~ 450 (734)
.|+.-|.+..+.-++..|..+++.-...|...+++|.|.|+.|| .|++|+. ++||+. ..|. ..|+|..|+|
T Consensus 3889 kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gy----TG~~Ce~~Gi~eCs~-n~C~~gg~C~n~~gsf 3963 (4289)
T KOG1219|consen 3889 KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGY----TGKRCEARGISECSK-NVCGTGGQCINIPGSF 3963 (4289)
T ss_pred eCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCc----cCceeeccccccccc-ccccCCceeeccCCce
Confidence 45555554432235667776655556689999999999999999 7889964 788974 3564 4899999999
Q ss_pred EEecCCCeeeCC
Q psy8875 451 KCECVAGYIKDP 462 (734)
Q Consensus 451 ~C~C~~gy~~~~ 462 (734)
.|.|.+||.+..
T Consensus 3964 ~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3964 HCNCTPGILGRT 3975 (4289)
T ss_pred EeccChhHhccc
Confidence 999999998753
No 73
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.07 E-value=7.9e-06 Score=58.78 Aligned_cols=40 Identities=45% Similarity=0.812 Sum_probs=36.1
Q ss_pred EEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 541 ~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
++..++..|.|||+||..++|||+|.....|++++++|..
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 3445788999999999999999999999999999999875
No 74
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.07 E-value=0.00036 Score=70.73 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=118.0
Q ss_pred EEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-----CCceEEEEc-------CCCCCceeEEEeCCCCe-----
Q psy8875 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-----GTMRKVLVR-------SYLDEPRSLALNPIDGW----- 603 (734)
Q Consensus 541 ~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-----G~~~~~l~~-------~~l~~P~~iavD~~~g~----- 603 (734)
.+...+.+|.|||+.+ ++.++++|..++.....+.+ |.....++. .....|.||++....++
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 3456788999999986 56888899988888888877 444333332 12357999999855443
Q ss_pred --------EEEEecCCCceEEEec--cCCC---ceEEEEEc--CCCCceeEEEecC--CCeEEEEeCCCCeEEEEecCCC
Q psy8875 604 --------MYWSDWGQNAKIERAG--MDGS---HRNMVIVS--DIKWPNGLTLDLV--QRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 604 --------LYwtd~~~~~~I~~~~--ldG~---~~~~lv~~--~l~~P~glavD~~--~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
||.++. +.|.-.+ .+-+ ...+++.. ....-.||||-.. ..+||-+|-..++|.++ |++
T Consensus 96 g~~~~a~Fif~tEd---GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF--d~~ 170 (336)
T TIGR03118 96 GITGPSRFLFVTED---GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF--KGS 170 (336)
T ss_pred CcccceeEEEEeCC---ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe--cCc
Confidence 555552 3443322 2222 12233332 1233468888643 67999999999999986 455
Q ss_pred ceEEEEcC----C--CCCCCCeEEEEECCEEEEEeCCC-------------CceEEEeccCCCceEEEecccccCCCccC
Q psy8875 667 NRRLVLYS----P--QTLSHPFSISTFEDWLYWSDWQQ-------------KAIYKANKFTGDNLTAITGVHQTHEPLNS 727 (734)
Q Consensus 667 ~~~~i~~~----~--~~~~~P~gl~v~~~~lywtd~~~-------------~~v~~~~~~~G~~~~~l~~~~~l~~P~~i 727 (734)
.+++.+.. + ..-..|+.|...+++||+|=... +-|-.++ .+|..++.+++...|..|++|
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd-~~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT-LNGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEc-CCCcEEEEeccCCcccCCcee
Confidence 44333221 1 22346899999999999984332 3444444 578888888888889999998
Q ss_pred CC
Q psy8875 728 PG 729 (734)
Q Consensus 728 ~~ 729 (734)
+.
T Consensus 250 a~ 251 (336)
T TIGR03118 250 AI 251 (336)
T ss_pred ee
Confidence 64
No 75
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.002 Score=71.91 Aligned_cols=223 Identities=11% Similarity=0.110 Sum_probs=137.2
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+..+.+|.+...+.........++|.+..++|.++.... ..|+..++.++.. +.+.. .......+++.+.++.
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~-~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVAS-FRGHNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEec-CCCccCceeECCCCCE
Confidence 356666778877666555444567889999888888875443 4688888875433 23322 1122345777777788
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++... ...|++.++++...+.+.. ........++.|...+|+++. ......|+..++++...+.+ ... . .
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~ 336 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G--Y 336 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C--C
Confidence 8887533 3368888888776655543 333456788888777777664 33356899988887765543 221 1 2
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-CceEEEeccCCCceEEEe
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-KAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-~~v~~~~~~~G~~~~~l~ 716 (734)
.+++.+.++.|+++.. ..|..+++.+...+.+... .....| ..+-.+..|+++.... ..++.+...+|+..+.|.
T Consensus 337 ~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~-~~~~~~-~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMING--DNVVKQDLTSGSTEVLSST-FLDESP-SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCC-CCCCCc-eECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 3567777888887754 5677788876655544321 111112 2333566777776532 334444445787777775
No 76
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0013 Score=73.82 Aligned_cols=184 Identities=9% Similarity=0.033 Sum_probs=117.7
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.+++.+.....+........+.+|.+...+|+++....+ .|+.++++++..+ .+.. ........++.+.++.|
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~-~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITR-HRAIDTEPSWHPDGKSL 320 (448)
T ss_pred EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEE
Confidence 588888877666555432223346788888888888644333 5999998855433 2222 22334556677777888
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++... ...|+++++++...+.+... .....+.++.|...+||++... ....|++.++++...+.+..... -..
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ 397 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DES 397 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CCC
Confidence 887543 45799999876655444322 2233456888888889887643 23588999998876554432222 123
Q ss_pred EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEE
Q psy8875 639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~ 672 (734)
.++.+.++.|+++... ...|+.++.+|...+.+.
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 3677778888887643 335888899998777664
No 77
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.00 E-value=0.0025 Score=69.30 Aligned_cols=188 Identities=11% Similarity=0.105 Sum_probs=117.9
Q ss_pred ccceEEeecCCCceEEEecCCcce-EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~-~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
.+.|..|+....+....++....+ .++.+.+..+++|+++ ..+.|.++++..+.....+ . .-..|.++|+.+.++.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~v~~i-~-~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKVVATI-K-VGGNPRGIAVSPDGKY 91 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSEEEEE-E--SSEEEEEEE--TTTE
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCcccEEEEE-e-cCCCcceEEEcCCCCE
Confidence 567888887766655555544444 5566777678899987 4689999999855433333 3 2357999999988999
Q ss_pred EEEEeCCCCeEEEEeCCCCc-eEEEEcCCC----C--CceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcC
Q psy8875 561 IYWTDAHKNTIELANFEGTM-RKVLVRSYL----D--EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSD 632 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~-~~~l~~~~l----~--~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~ 632 (734)
||.++...+.|.+.+..... .+.+-.... . .+.+|.-.+.+ ..|+....+.++|+..+.... ...+....-
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 99999999999998875433 333322211 2 33466555544 445544445689999986543 222222233
Q ss_pred CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc
Q psy8875 633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 633 l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~ 673 (734)
-..|++..+|+.+.++|.+-...+.|..++........++.
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 46799999998888888887778899999977665555543
No 78
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.94 E-value=6.9e-06 Score=56.05 Aligned_cols=31 Identities=39% Similarity=0.944 Sum_probs=26.8
Q ss_pred CCCcccceeccCCceEEecCCCeeeCCCCCc
Q psy8875 436 PGSCSQICLNEKGGFKCECVAGYIKDPHHPT 466 (734)
Q Consensus 436 ~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t 466 (734)
++.|+|+|++++++|+|.|++||.+..++++
T Consensus 5 NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~t 35 (36)
T PF14670_consen 5 NGGCSHICVNTPGSYRCSCPPGYKLAEDGRT 35 (36)
T ss_dssp GGGSSSEEEEETTSEEEE-STTEEE-TTSSS
T ss_pred CCCcCCCCccCCCceEeECCCCCEECcCCCC
Confidence 5789999999999999999999999988765
No 79
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0022 Score=71.73 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=119.9
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+..++.+.....+........+.+|.+...+|+++-.. ...|+.+++.++..+ .+.. ........++.+.++.
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG~~ 303 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDGSQ 303 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCCCE
Confidence 46888888776665554333344577888878888776433 346999998855433 2322 2223345666766777
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++... ...|++++++|...+.+.... ......++.|...+|+++... ....|+..+++|...+.+... ....
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~ 380 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVE 380 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCC
Confidence 7776533 457999999887666655322 223456788888888887642 235899989888766544322 2345
Q ss_pred eEEEecCCCeEEEEeCCC-----CeEEEEecCCCceEEEE
Q psy8875 638 GLTLDLVQRRLYWVDAKL-----NEISSCDYNGGNRRLVL 672 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~-----~~I~~~~~dG~~~~~i~ 672 (734)
.+++.+.++.||++-... ..|+.++++|...+.+.
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 678888888888874322 47999999998776554
No 80
>KOG1217|consensus
Probab=97.92 E-value=0.00033 Score=79.14 Aligned_cols=274 Identities=23% Similarity=0.518 Sum_probs=144.1
Q ss_pred CCCCCCcCCCCCC-Cccccc-CcCCCCceEeCc-cccCCCCCCCCCCCCCCCCccCccccccCCCCCC---CcccCCCcc
Q psy8875 121 CSDGSDEKSCKNR-TCQASE-FRCGNNRCIPNH-WQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS---HLCLPAPQI 194 (734)
Q Consensus 121 C~dg~de~~C~~~-~C~~~~-f~C~~g~Ci~~~-~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~---~~C~~~~~~ 194 (734)
|..|+....|... .|.... ..+..+.|+... ........|..|+.... |......|. +.|.+...|
T Consensus 114 c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~--------~~~~~~~C~~~~~~c~~~~~C 185 (487)
T KOG1217|consen 114 CPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEP--------CETDLDECIQYSSPCQNGGTC 185 (487)
T ss_pred CCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCccccc--------ccccccccccCCCCcCCCccc
Confidence 5566555555433 355443 244566676543 23345567888887765 332223442 247777777
Q ss_pred cCCCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCC---CCCCCcee
Q psy8875 195 NAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE---TCRSDEFT 271 (734)
Q Consensus 195 ~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~---~C~~~~~~ 271 (734)
.+....|.|.|++||.+..++.. . ..+.|+.. ..|. |..+.....|.. .|...
T Consensus 186 ~~~~~~~~C~c~~~~~~~~~~~~---------~-------~~~~c~~~-~~~~----~~~g~~~~~c~~~~~~~~~~--- 241 (487)
T KOG1217|consen 186 VNTGGSYLCSCPPGYTGSTCETT---------G-------NGGTCVDS-VACS----CPPGARGPECEVSIVECASG--- 241 (487)
T ss_pred ccCCCCeeEeCCCCccCCcCcCC---------C-------CCceEecc-eecc----CCCCCCCCCcccccccccCC---
Confidence 77777899999999988765432 0 11233332 2222 444444444431 22211
Q ss_pred cCCCCeecC--CcccCCCCCCCCCCCCCCC----CCCCCCCCceecCCCCcccccc--ccccCCCCCCCC----CC---C
Q psy8875 272 CANGNCIQR--IWLCDGDDDCKDGSDEKSC----QPVKCTAGQFTCQNLTACIPDK--WVCDGDTVEKDS----TC---P 336 (734)
Q Consensus 272 C~~g~Ci~~--~~~Cdg~~dC~dgsDe~~C----~~~~C~~~~~~C~~~~~Ci~~~--~~Cdg~~dC~d~----~C---~ 336 (734)
. ++|+.. .+.| .|..|+-...+ ....|..... |.++++|+... +.|. |..+ .| .
T Consensus 242 -~-~~c~~~~~~~~C----~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~----C~~g~~g~~~~~~~ 310 (487)
T KOG1217|consen 242 -D-GTCVNTVGSYTC----RCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSYRCT----CPPGFTGRLCTECV 310 (487)
T ss_pred -C-CcccccCCceee----eCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcceee----CCCCCCCCCCcccc
Confidence 1 233322 2233 33344333332 1334544433 66667777643 3441 4333 11 0
Q ss_pred CCCCCCC-CccccccccccCCCCCcccccc----cccccCCCCCCCCCCCCCCCCcc-c-cccccCCCCCcCcccc-CCC
Q psy8875 337 NATPMNS-SVRIEGAVAFIPPGFAMAMKIV----RTAVCDKHPDCPLMQDEDPTKCG-V-DECAKDNGGCLHKCVD-LPV 408 (734)
Q Consensus 337 ~~~~c~~-~~~~~C~~~~~~~~~~~~~C~~----~~~~C~~~~~C~~g~d~~~~~C~-~-~eC~~~~~~C~~~C~~-~~~ 408 (734)
....|.. .....|.+ +..|.. ....| .|+.++. +..|. . ++|...+......|.+ ..+
T Consensus 311 ~~~~C~~~~~~~~c~~--------g~~C~~~~~~~~~~C----~c~~~~~--g~~C~~~~~~C~~~~~~~~~~c~~~~~~ 376 (487)
T KOG1217|consen 311 DVDECSPRNAGGPCAN--------GGTCNTLGSFGGFRC----ACGPGFT--GRRCEDSNDECASSPCCPGGTCVNETPG 376 (487)
T ss_pred ccccccccccCCcCCC--------CcccccCCCCCCCCc----CCCCCCC--CCccccCCccccCCccccCCEeccCCCC
Confidence 1111110 01111210 122311 11223 5555533 34563 3 3788765555678999 799
Q ss_pred cceeecCCCcEec--CCCCccccccCcCCCCCcccceeccCCceEEecCC
Q psy8875 409 GYMCECNEGYKLS--SNRHTCIDIDECETPGSCSQICLNEKGGFKCECVA 456 (734)
Q Consensus 409 ~~~C~C~~G~~l~--~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~ 456 (734)
+|.|.|+.+|.+. .+...|.++++|.. ...|.+..+++.|. ..
T Consensus 377 ~~~c~~~~~~~~~~~~~~~~~~~~~~c~~----~~~c~~~~~~~~c~-~~ 421 (487)
T KOG1217|consen 377 SYRCACPAGFAGKANGDGVGCEDIDECSG----CGDCVNGPGGGACT-PP 421 (487)
T ss_pred CeEecCCCccccCCccccccccccccccC----CcceeccCCCCccc-cC
Confidence 9999999999864 57788999998865 44678888999998 77
No 81
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.0021 Score=71.83 Aligned_cols=186 Identities=9% Similarity=0.015 Sum_probs=118.7
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+.+++.+.....+........+++|.+..++|+++-... ..|+.+++.++..+. +.. .......+++.+.++.
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-~~~~~~~~~~spDG~~ 305 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN-HFGIDTEPTWAPDGKS 305 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc-CCCCccceEECCCCCE
Confidence 358888887766655543222334678888888888764333 469999988554332 222 2223345677777777
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++... ...|+++++++...+.+... ......+++.|...+|+++... ....|+..++++...+.+.... ...
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~ 382 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDE 382 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCC
Confidence 8777533 34699999877655544422 2334568899988899887532 2347889898776655443221 234
Q ss_pred eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEc
Q psy8875 638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~ 673 (734)
.+++.+.+..|+++.. ....|+.++++|..++.+..
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 5678777888888754 34579999999887766643
No 82
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00063 Score=68.64 Aligned_cols=165 Identities=15% Similarity=0.228 Sum_probs=104.1
Q ss_pred eEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce------EEEEeC---CCCCccceee
Q psy8875 485 IRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER------TVVIEE---DKTIADGLAV 554 (734)
Q Consensus 485 I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~------~~~~~~---~~~~p~glAv 554 (734)
|..++++|.-+..+ +..+..|.+|+|.. .+..-.+|...++++.+.++.++.. ++.+.. .-..-+|||.
T Consensus 110 iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~ 188 (316)
T COG3204 110 IVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAW 188 (316)
T ss_pred EEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeec
Confidence 44444444443333 23466788888872 3444456777778887777644321 111111 1224579999
Q ss_pred eccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc----C----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce
Q psy8875 555 DWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR----S----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR 625 (734)
Q Consensus 555 D~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~----~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~ 625 (734)
|+..+.||++-..+ -.|+..+..-+...+-+. . .+....|+.+|+.++.|++... +...|...+.+|..+
T Consensus 189 d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-ESr~l~Evd~~G~~~ 267 (316)
T COG3204 189 DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-ESRRLLEVDLSGEVI 267 (316)
T ss_pred CCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-CCceEEEEecCCCee
Confidence 99999999987653 356666533221111110 0 1456679999999999988874 457888889999865
Q ss_pred EEEEE--------cCCCCceeEEEecCCCeEEEEe
Q psy8875 626 NMVIV--------SDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 626 ~~lv~--------~~l~~P~glavD~~~~~LYw~D 652 (734)
..+.. .++.+|.|||+| ..+.||++.
T Consensus 268 ~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvS 301 (316)
T COG3204 268 ELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVS 301 (316)
T ss_pred eeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEe
Confidence 55432 357889999999 788999875
No 83
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.91 E-value=4.1e-05 Score=64.19 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=56.3
Q ss_pred ceeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc
Q psy8875 551 GLAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA 613 (734)
Q Consensus 551 glAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~ 613 (734)
+|+|+..++.|||||+. ++++.+.++..+..++|+ .+|.-|+|||+.+....|++++.. ..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~-~~ 79 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETG-RY 79 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGG-GT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEecc-Cc
Confidence 68899777999999974 378999999988877777 668999999999999999999976 48
Q ss_pred eEEEeccCC
Q psy8875 614 KIERAGMDG 622 (734)
Q Consensus 614 ~I~~~~ldG 622 (734)
+|.|..+.|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999999887
No 84
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.89 E-value=0.0065 Score=62.42 Aligned_cols=229 Identities=14% Similarity=0.135 Sum_probs=135.5
Q ss_pred ceeeeeec--cceEEeecC-CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEec----------CCCCceEEE
Q psy8875 475 ASLLFARK--HDIRKISLD-HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI----------DEGSERTVV 541 (734)
Q Consensus 475 ~~l~~~~~--~~I~~i~l~-~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l----------~~g~~~~~~ 541 (734)
-+|.|+.. ..+..+.++ ...+......+.++-||+.. .++||.+. ..+|++... .++...-.+
T Consensus 18 ~Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t--~~qiw~f~~~~n~l~~~~~~~~~D~~yv 93 (335)
T TIGR03032 18 LSLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGT--RYQLWRFANVDNLLPAGQTHPGYDRLYV 93 (335)
T ss_pred eEEEEEeeecceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEE--cceeEEcccccccccccccCCCCCeEEe
Confidence 34555553 345555544 22344445567888999887 67888875 334555411 111111111
Q ss_pred ----EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE--------EEEcCCCCCceeEEEeCCCCeEEEEec
Q psy8875 542 ----IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK--------VLVRSYLDEPRSLALNPIDGWMYWSDW 609 (734)
Q Consensus 542 ----~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~--------~l~~~~l~~P~~iavD~~~g~LYwtd~ 609 (734)
..++--....||+ ..+.|++.+..-.-+-..+..-+... .+..++.-+-+|||++ ...--|+|..
T Consensus 94 Pr~~~~TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~ 170 (335)
T TIGR03032 94 PRASYVTGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTAL 170 (335)
T ss_pred eeeeeeccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEe
Confidence 1112234556666 46677777766555555554444322 1222344567899995 2334566764
Q ss_pred CCC--ceEEEecc-CCCceE-----EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC
Q psy8875 610 GQN--AKIERAGM-DGSHRN-----MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP 681 (734)
Q Consensus 610 ~~~--~~I~~~~l-dG~~~~-----~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P 681 (734)
+.. ..=||-+. +|.... .++.+.+..|.+.-+ .+++||+.|+++++|.+++.+.+..+++..- -+.|
T Consensus 171 ~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~ 245 (335)
T TIGR03032 171 SQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFT 245 (335)
T ss_pred eccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCC
Confidence 432 23344333 222111 133467788888887 5899999999999999999985555555543 4689
Q ss_pred eEEEEECCEEEEEeCCCC-------------------ceEEEeccCCCceEEE
Q psy8875 682 FSISTFEDWLYWSDWQQK-------------------AIYKANKFTGDNLTAI 715 (734)
Q Consensus 682 ~gl~v~~~~lywtd~~~~-------------------~v~~~~~~~G~~~~~l 715 (734)
.||++.++.+|+.-++.+ .|+.+|..+|..+..|
T Consensus 246 rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l 298 (335)
T TIGR03032 246 RGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWL 298 (335)
T ss_pred cccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEE
Confidence 999999888888755432 3778888888765543
No 85
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00098 Score=71.62 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=99.2
Q ss_pred CCccceeeeccCCcEEEEeCCC-------------CeEEEEeCC--------CCceEEEEcCCCCCceeEEEeCCCCeEE
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHK-------------NTIELANFE--------GTMRKVLVRSYLDEPRSLALNPIDGWMY 605 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~-------------~~I~~~~ld--------G~~~~~l~~~~l~~P~~iavD~~~g~LY 605 (734)
..-..|++++.+ +||++--.. ++|.+.+.+ +... .++..++.+|.|++++|.+|.||
T Consensus 177 H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~-~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 177 HFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNS-EIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred cCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCc-ceEEeccCCccceeecCCCCcEE
Confidence 344579999776 999985432 344444333 3332 24456788999999999999999
Q ss_pred EEecCC---C-----ceE-----------E-------EeccCCCceEEEEEcC-----CCCceeEEEecCC-------Ce
Q psy8875 606 WSDWGQ---N-----AKI-----------E-------RAGMDGSHRNMVIVSD-----IKWPNGLTLDLVQ-------RR 647 (734)
Q Consensus 606 wtd~~~---~-----~~I-----------~-------~~~ldG~~~~~lv~~~-----l~~P~glavD~~~-------~~ 647 (734)
.++.+. . ..| + +..+++.....++... -.-|.||++- .+ +.
T Consensus 255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy-~G~~fP~~r~~ 333 (399)
T COG2133 255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFY-TGDLFPAYRGD 333 (399)
T ss_pred EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEe-cCCcCccccCc
Confidence 999765 1 111 1 0111111111111111 1236788883 23 68
Q ss_pred EEEEeCCCCeEEEEecCCCc---eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCC-CCceEEEecc
Q psy8875 648 LYWVDAKLNEISSCDYNGGN---RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQ-QKAIYKANKF 707 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~---~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~-~~~v~~~~~~ 707 (734)
||++..+...+.+.+.+|.. .+.++.. .....|.+|++ ..+.||+++-. +++|+|+...
T Consensus 334 lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~-d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 334 LFVGAHGSWPVLRLRPDGNYKVVLTGFLSG-DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred EEEEeecceeEEEeccCCCcceEEEEEEec-CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 99998777788888888883 3333432 23368999999 67889998766 6799998653
No 86
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.85 E-value=0.011 Score=60.09 Aligned_cols=212 Identities=15% Similarity=0.075 Sum_probs=119.2
Q ss_pred ccceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
...|+..++.... ...+......+..+++.+. +.++++....+.|...++..+... ..+......+..+++++. +.
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~ 148 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPD-GT 148 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEEEcCc-CC
Confidence 4555555555432 2233333346788888865 456666555778888887633322 222223345678888866 44
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
++++....+.|.+.++........+......+..+++.+....|+.+.. .+.|...++........+......+..++
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCceecchhhcCCceEEEE
Confidence 4444444678888888643333333334446789999987667777663 46777777754332222222233567888
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCce
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAI 701 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v 701 (734)
+++. +.++++....+.|...++........+. .....+.++++.. +.++++-...+.|
T Consensus 227 ~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 227 FSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred EcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 8755 5666665557788888876433332222 1123355666643 2344443333443
No 87
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.81 E-value=2.3e-05 Score=56.15 Aligned_cols=36 Identities=36% Similarity=0.914 Sum_probs=30.1
Q ss_pred cccCcCCC-CCcc--cceeccCCceEEecCCCeeeCCCC
Q psy8875 429 DIDECETP-GSCS--QICLNEKGGFKCECVAGYIKDPHH 464 (734)
Q Consensus 429 ~~~eC~~~-~~C~--~~C~n~~g~~~C~C~~gy~~~~~~ 464 (734)
|||||+.. ..|. +.|+|+.|+|.|.|++||......
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~ 39 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDG 39 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTS
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCC
Confidence 68999864 5786 699999999999999999965543
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.0082 Score=66.81 Aligned_cols=189 Identities=9% Similarity=0.056 Sum_probs=118.4
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEE--ecCCC--CceEEEEeCCCCCccceeeec
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKA--PIDEG--SERTVVIEEDKTIADGLAVDW 556 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~--~l~~g--~~~~~~~~~~~~~p~glAvD~ 556 (734)
..|+.+++++.....+........+.+|.+...+|.|+... ...|+.. ++..+ .....+...........++.+
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 46888899888777776544445567888888888887532 2345554 33322 122233322222334567777
Q ss_pred cCCcEEEEeCC--CCeEEEEeCCC--CceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEc
Q psy8875 557 IYSHIYWTDAH--KNTIELANFEG--TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 557 ~~~~lY~td~~--~~~I~~~~ldG--~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~ 631 (734)
.++.|+|+... ...|+++++++ ...+.+. .........++.|...+|+++... ....|++.++++...+.+...
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 77878777543 34788888764 2233332 222344567888888888877532 235899999988776655433
Q ss_pred CCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEc
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~ 673 (734)
.......++.+.++.||++.. +...|+.++++|...+.+..
T Consensus 370 -~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 370 -PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 223456778777788887643 34579999998887776654
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.0083 Score=66.99 Aligned_cols=185 Identities=12% Similarity=0.022 Sum_probs=116.1
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+.+++.+.....+........+.+|.+..++|+++-... ..|+.++++++..+ .+.. ........++.+.++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~-~~~~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN-HPAIDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc-CCCCcCCeEECCCCCE
Confidence 357777887666555543222334678888888888764333 47999998855433 2322 2223344566666777
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
||++... ...|+++++++...+.+.... ......++.|..++|+++... ....|++.++++...+.+.... ...
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~ 377 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDE 377 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCC
Confidence 8777543 457999998766554443221 223346778888899888642 2347899999877665554322 223
Q ss_pred eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEE
Q psy8875 638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~ 672 (734)
..++.+.++.|+++.. +..+|+.++++|...+.+.
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 4577777888988864 3457888889887765553
No 90
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.71 E-value=0.0098 Score=66.33 Aligned_cols=186 Identities=6% Similarity=0.042 Sum_probs=118.7
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+.+++.+.....+........+++|.+...+|+++.... ..|+.++++++.. +.+.. ........++.+.++.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-~~~~~~~~~wSPDG~~ 300 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQN 300 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-CCCCcCceEECCCCCE
Confidence 457777777666555543323345678998888899874433 3699999885543 33322 2234456777777777
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++... ...|+++++++...+.+.. ........++.|...+|+++... ....|+..++++...+.+... . .-.
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~-~~~ 377 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-F-LDE 377 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-C-CCC
Confidence 8666432 3579999998776555542 22334567888887888776532 235788888887765544322 1 122
Q ss_pred eEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEc
Q psy8875 638 GLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 638 glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~ 673 (734)
..++.+.+..|+++... ...|+.++++|...+.+..
T Consensus 378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 45677778888888643 3358888899988777643
No 91
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.011 Score=66.00 Aligned_cols=185 Identities=10% Similarity=0.037 Sum_probs=116.5
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+..++.+.....+........+.+|.+..++|+++-.. ...|+.++++++.. +.+.. ........++.+.++.
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~ 297 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ-SSGIDTEPFFSPDGRS 297 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCC-CCCCCcCeEEcCCCCE
Confidence 34888888777666554333345678898888888875332 34689988875443 22222 2222345667767777
Q ss_pred EEEEeC--CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDA--HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~--~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++.. +...|+++++++...+.+.... ......++.|...+|+++.. +....|+..++++...+.+... ....
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~ 374 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDE 374 (427)
T ss_pred EEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCcc
Confidence 877643 2457888888776554444222 22345678888888887753 2234789988877665555432 2234
Q ss_pred eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEE
Q psy8875 638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~ 672 (734)
.+++.+.+..||++-. +...|+.++++|..++.+.
T Consensus 375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred CceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 5678888888888753 3346888888888776664
No 92
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.64 E-value=0.012 Score=65.42 Aligned_cols=184 Identities=12% Similarity=0.054 Sum_probs=114.2
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+.+++.+.....+........+++|.+..+.|+++... ...|+..++.++... .+.. ........++.+.++.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTN-GPGIDTEPSWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCC-CCCCCCCEEECCCCCE
Confidence 45777777765555444332344567888877888876543 346999988754332 2222 1122234456656777
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++... ...|+++++++...+.+.. .......+++.|...+|+++.... ..+|+..++++...+.+.... ...
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~ 368 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LDE 368 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CCC
Confidence 8776543 3479999998776554442 334556778888888899987532 347889888876554443221 233
Q ss_pred eEEEecCCCeEEEEeCCC--CeEEEEecCCCceEEE
Q psy8875 638 GLTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLV 671 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i 671 (734)
..++.+.++.|+++.... ..|+.++.+|...+.+
T Consensus 369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 456777788888886533 3577777777666544
No 93
>KOG1217|consensus
Probab=97.57 E-value=0.00052 Score=77.50 Aligned_cols=209 Identities=28% Similarity=0.724 Sum_probs=123.6
Q ss_pred CCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecC-----cCCCCCCCCCCCCCCCCCCC---CCCCCCc
Q psy8875 198 SPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPS-----TWVCDGQNDCPDGVDEKKCH---ETCRSDE 269 (734)
Q Consensus 198 ~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~-----~~~Cdg~~dC~dg~de~~C~---~~C~~~~ 269 (734)
...+.|.|+.||.+..+.... .|.......+..+.|+.. .++|. |..|+....|. ..|....
T Consensus 107 ~~~~~c~c~~g~~~~~~~~~~------~C~~~~~~~~~~~~c~~~~~~~~~~~c~----C~~g~~~~~~~~~~~~C~~~~ 176 (487)
T KOG1217|consen 107 VGSYECTCPPGYQGTPCEGEC------ECVTGPGVCCIDGSCSNGPGSVGPFRCS----CTEGYEGEPCETDLDECIQYS 176 (487)
T ss_pred CCCceeeCCCccccCcCCcce------eecCCCCCeeCchhhcCCCCCCCceeee----eCCCcccccccccccccccCC
Confidence 367889999999998877631 233111133456677653 55666 99999998886 3677666
Q ss_pred eecCCC-CeecC--CcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccc----------ccccc-CCCCCCCCCC
Q psy8875 270 FTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPD----------KWVCD-GDTVEKDSTC 335 (734)
Q Consensus 270 ~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~----------~~~Cd-g~~dC~d~~C 335 (734)
..|.++ .|.+. .+.| .|..++-...|... .+.+.|+.. ...|. ...+|..+
T Consensus 177 ~~c~~~~~C~~~~~~~~C----~c~~~~~~~~~~~~---------~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~-- 241 (487)
T KOG1217|consen 177 SPCQNGGTCVNTGGSYLC----SCPPGYTGSTCETT---------GNGGTCVDSVACSCPPGARGPECEVSIVECASG-- 241 (487)
T ss_pred CCcCCCcccccCCCCeeE----eCCCCccCCcCcCC---------CCCceEecceeccCCCCCCCCCcccccccccCC--
Confidence 668876 78765 4667 68888877777632 111222221 00110 00111000
Q ss_pred CCCCCCC-CCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCC-CCc-cccccccCCCCCc--CccccCCCcc
Q psy8875 336 PNATPMN-SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDP-TKC-GVDECAKDNGGCL--HKCVDLPVGY 410 (734)
Q Consensus 336 ~~~~~c~-~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~-~~C-~~~eC~~~~~~C~--~~C~~~~~~~ 410 (734)
+ ..|. ..+.|. | .|+.|+.... ..| ++++|..... |. ..|++.++.|
T Consensus 242 -~-~~c~~~~~~~~---------------------C----~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~ 293 (487)
T KOG1217|consen 242 -D-GTCVNTVGSYT---------------------C----RCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSY 293 (487)
T ss_pred -C-CcccccCCcee---------------------e----eCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcc
Confidence 0 1110 112222 3 5566665554 234 7888887643 54 5999999999
Q ss_pred eeecCCCcEecCCCCccccccCcC---CCCCccc--ce--eccCCceEEecCCCeee
Q psy8875 411 MCECNEGYKLSSNRHTCIDIDECE---TPGSCSQ--IC--LNEKGGFKCECVAGYIK 460 (734)
Q Consensus 411 ~C~C~~G~~l~~~~~~C~~~~eC~---~~~~C~~--~C--~n~~g~~~C~C~~gy~~ 460 (734)
.|.|++||..... ..|.+..+|. ....|.. .| .+..+.+.|.|..+|.+
T Consensus 294 ~C~C~~g~~g~~~-~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g 349 (487)
T KOG1217|consen 294 RCTCPPGFTGRLC-TECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTG 349 (487)
T ss_pred eeeCCCCCCCCCC-ccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCC
Confidence 9999999976544 4466667774 2333543 44 44455788999988544
No 94
>KOG1446|consensus
Probab=97.55 E-value=0.11 Score=52.88 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=118.7
Q ss_pred EEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEE
Q psy8875 517 IFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLA 596 (734)
Q Consensus 517 lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~ia 596 (734)
||=+...+..|+-.++.. +.....+.+--..+.+|++-|.. ..|.+-+..+.|+..++.-.....++ .+..+--.|
T Consensus 72 i~sStk~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~~~pi~A 147 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL--NLSGRPIAA 147 (311)
T ss_pred EEccCCCCCceEEEEeec-CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE--ecCCCccee
Confidence 333333344566666552 23222333334456788888776 78888888889999999866666665 344566789
Q ss_pred EeCCCCeEEEEecCCCceEEEecc---CCCceEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEE
Q psy8875 597 LNPIDGWMYWSDWGQNAKIERAGM---DGSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRL 670 (734)
Q Consensus 597 vD~~~g~LYwtd~~~~~~I~~~~l---dG~~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~ 670 (734)
.|| .|.||.+-.+. ..|...++ |..-.+++.. .....-+.|.+.+.++.|.++.. .+.|..++ ++|.-...
T Consensus 148 fDp-~GLifA~~~~~-~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 148 FDP-EGLIFALANGS-ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKST 224 (311)
T ss_pred ECC-CCcEEEEecCC-CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeee
Confidence 998 47777776544 26655544 3333333322 22334467888877777777664 35566666 77875555
Q ss_pred EEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875 671 VLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 671 i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
+-..+....-|.+-++ -++....+-...++|...+..+|..+.++...
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 5433333334544344 35555566666688888888888888777654
No 95
>KOG4499|consensus
Probab=97.52 E-value=0.003 Score=61.56 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=68.4
Q ss_pred EEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcE--EEEecCCCCc--eEEEEeC------CCCCccceeee
Q psy8875 486 RKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKI--YKAPIDEGSE--RTVVIEE------DKTIADGLAVD 555 (734)
Q Consensus 486 ~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I--~~~~l~~g~~--~~~~~~~------~~~~p~glAvD 555 (734)
.+..+.++.+..+-..+.-+.||+||....++|++|..+-.| +..+..+|.. +.+++.- ....|.|++||
T Consensus 141 Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID 220 (310)
T KOG4499|consen 141 LYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID 220 (310)
T ss_pred EEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc
Confidence 344455666666666677788999999999999999998888 4444554432 4444321 23468999999
Q ss_pred ccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 556 WIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 556 ~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
..|+||++-+..++|+++++...
T Consensus 221 -~eG~L~Va~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 221 -TEGNLYVATFNGGTVQKVDPTTG 243 (310)
T ss_pred -cCCcEEEEEecCcEEEEECCCCC
Confidence 58999999999999999988543
No 96
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.43 E-value=0.02 Score=61.08 Aligned_cols=220 Identities=17% Similarity=0.189 Sum_probs=114.8
Q ss_pred cCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeecc----------------CCeE
Q psy8875 454 CVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFR----------------TGMI 517 (734)
Q Consensus 454 C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~----------------~~~l 517 (734)
|.++|.+.++-.. ..++|+...+++..++.......|..++.....--+.+. +.-|
T Consensus 38 cM~n~~l~PDI~G--------D~IiFt~~DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDl 109 (668)
T COG4946 38 CMKNYYLNPDIYG--------DRIIFTCCDDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADL 109 (668)
T ss_pred hhhhhhcCCcccC--------cEEEEEechHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccE
Confidence 4555666554221 246666667777777665555555444332222222222 3345
Q ss_pred EEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-----CeEEEEeCCCCceEEEEcCCCCCc
Q psy8875 518 FWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-----NTIELANFEGTMRKVLVRSYLDEP 592 (734)
Q Consensus 518 yw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-----~~I~~~~ldG~~~~~l~~~~l~~P 592 (734)
|+++...+.+.|+..- |. .+..+.| .++.++.|..||..+ ..+++++.||.....| ++...
T Consensus 110 y~v~~e~Ge~kRiTyf-Gr--------~fT~VaG--~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L---nlGpa 175 (668)
T COG4946 110 YVVPSEDGEAKRITYF-GR--------RFTRVAG--WIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL---NLGPA 175 (668)
T ss_pred EEEeCCCCcEEEEEEe-cc--------ccceeec--cCCCCCEEEEeccCCCcccceeeeEEccCCceeeec---cCCce
Confidence 5555555555544433 22 2222222 223345566666653 2456777787644333 23333
Q ss_pred eeEEEeCCCCeEEEE----------ec--CCCceEEEeccCCCceEEEEE--cCCCCceeEEEecCCCeEEEEe--CCCC
Q psy8875 593 RSLALNPIDGWMYWS----------DW--GQNAKIERAGMDGSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVD--AKLN 656 (734)
Q Consensus 593 ~~iavD~~~g~LYwt----------d~--~~~~~I~~~~ldG~~~~~lv~--~~l~~P~glavD~~~~~LYw~D--~~~~ 656 (734)
..|.+ ..|.++.. .. |..++||.....|..-+.++. ..+.+| +.| .+|||+.. .+.+
T Consensus 176 thiv~--~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P--mIV---~~RvYFlsD~eG~G 248 (668)
T COG4946 176 THIVI--KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP--MIV---GERVYFLSDHEGVG 248 (668)
T ss_pred eeEEE--eCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc--eEE---cceEEEEecccCcc
Confidence 34444 34555443 32 345788888777755555554 456666 333 88999885 3567
Q ss_pred eEEEEecCCCceEEEEcCCCCCCCCeEE-------EE-ECCEEEEEeCCCCceEEE
Q psy8875 657 EISSCDYNGGNRRLVLYSPQTLSHPFSI-------ST-FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl-------~v-~~~~lywtd~~~~~v~~~ 704 (734)
.|++++++|.+.+.-.... -..|.-+ .+ ..|.||.-|..+.+|-++
T Consensus 249 nlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~~GdIylydP~td~lekl 302 (668)
T COG4946 249 NLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKL 302 (668)
T ss_pred ceEEeccCCchhhhcCCch--hccccccCCCCcEEEEecCCcEEEeCCCcCcceee
Confidence 9999999999766543211 1233333 33 345556556555555544
No 97
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.43 E-value=0.049 Score=55.30 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=108.1
Q ss_pred cceEEeecCCCceEEE--ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAI--VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+++++........ ++..--..||++. .++||...+..+..++.+.+. -....-+. -.....||+-| +..
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~-y~~EGWGLt~d--g~~ 141 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-LKKIGTFP-YPGEGWGLTSD--GKR 141 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEEEEEE--SSS--EEEEC--SSC
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-ceEEEEEe-cCCcceEEEcC--CCE
Confidence 4688888886654332 2334456788877 789999999999999998873 22211122 23467799976 677
Q ss_pred EEEEeCCCCeEEEEeCCCC-ceEEE-Ec-C--CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cC--
Q psy8875 561 IYWTDAHKNTIELANFEGT-MRKVL-VR-S--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SD-- 632 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~-~~~~l-~~-~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~-- 632 (734)
||.+|. +.+|+..+...- ..+.+ +. . .+...+-|.. .+|+||---|. ...|.++++.-....-.+. +.
T Consensus 142 Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW~-td~I~~Idp~tG~V~~~iDls~L~ 217 (264)
T PF05096_consen 142 LIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVWQ-TDRIVRIDPETGKVVGWIDLSGLR 217 (264)
T ss_dssp EEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEETT-SSEEEEEETTT-BEEEEEE-HHHH
T ss_pred EEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeCC-CCeEEEEeCCCCeEEEEEEhhHhh
Confidence 888876 688888887542 22222 21 1 1233344544 58899888886 4899999987655544442 10
Q ss_pred ------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 633 ------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 633 ------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
..--||||.|+.+++||++--.-.+++.+.+..
T Consensus 218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e 262 (264)
T PF05096_consen 218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE 262 (264)
T ss_dssp HHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred hcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence 234699999999999999987777888877643
No 98
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.083 Score=53.52 Aligned_cols=219 Identities=12% Similarity=0.173 Sum_probs=118.6
Q ss_pred ceeeeeec-cceEEeecCCCceEEEecCC---cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875 475 ASLLFARK-HDIRKISLDHHEMTAIVNST---KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD 550 (734)
Q Consensus 475 ~~l~~~~~-~~I~~i~l~~~~~~~l~~~~---~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~ 550 (734)
.++++++. ..|+.+++...+...+...+ ....++++ ..+.+|++|+..+. ..+++...+..++. .....|.
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgf-LivdvsdpssP~la--grya~~~ 171 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGF-LIVDVSDPSSPQLA--GRYALPG 171 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcE-EEEECCCCCCceee--eeeccCC
Confidence 35555553 45666666544433333322 22344444 48899999986553 33454433333333 2233333
Q ss_pred ----ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 551 ----GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 551 ----glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
.+|| .++.-|++.+. +-+.+.+.......+++..--..|..-.+-+...+.|.++.++ .+.-.+.++....
T Consensus 172 ~d~~~v~I--SGn~AYvA~~d-~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp 246 (370)
T COG5276 172 GDTHDVAI--SGNYAYVAWRD-GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSP 246 (370)
T ss_pred CCceeEEE--ecCeEEEEEeC-CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCc
Confidence 3555 36677887765 3455556655555555543333344444444667888888654 3444555554433
Q ss_pred EEE-EcCCCCceeE-EEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC-CCCCCCeEEEEECCEEEEEeCCCCceEE
Q psy8875 627 MVI-VSDIKWPNGL-TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP-QTLSHPFSISTFEDWLYWSDWQQKAIYK 703 (734)
Q Consensus 627 ~lv-~~~l~~P~gl-avD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~-~~~~~P~gl~v~~~~lywtd~~~~~v~~ 703 (734)
+++ .-+...|.++ ++-..+++.|++|...+ +..++..-.....+..+- ....+..+|..+++++|++|.+++.|.-
T Consensus 247 ~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn~g~vV~ 325 (370)
T COG5276 247 TVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKNTGAVVD 325 (370)
T ss_pred eEeeccccCCcccccceecccceeeeeccccC-ceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCCceEEEe
Confidence 333 3344556555 22336899999996543 333333322222222211 1123567899999999999999887764
Q ss_pred E
Q psy8875 704 A 704 (734)
Q Consensus 704 ~ 704 (734)
+
T Consensus 326 ~ 326 (370)
T COG5276 326 A 326 (370)
T ss_pred C
Confidence 4
No 99
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.39 E-value=0.042 Score=58.93 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=100.9
Q ss_pred cceeeeee--ccceEEeecCCCceEEEecCCcceEEEee--ec--cCCe---EEEEEeCC--Cc--EEEEecCCCCceEE
Q psy8875 474 HASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDF--VF--RTGM---IFWSDISE--KK--IYKAPIDEGSERTV 540 (734)
Q Consensus 474 ~~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~--d~--~~~~---lyw~d~~~--~~--I~~~~l~~g~~~~~ 540 (734)
..++++.. ...++..+|+|.....+.. .++..||+ +. ..+. +..++... .+ ||+++.+.+....+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 34555543 3468888999988776633 23433333 21 1111 23344322 23 45555432221111
Q ss_pred -----EEeCCCCCccceeee--ccCCcEEEEe-CCCCeEEEEeC----CCCceEEEEc--CCCCCceeEEEeCCCCeEEE
Q psy8875 541 -----VIEEDKTIADGLAVD--WIYSHIYWTD-AHKNTIELANF----EGTMRKVLVR--SYLDEPRSLALNPIDGWMYW 606 (734)
Q Consensus 541 -----~~~~~~~~p~glAvD--~~~~~lY~td-~~~~~I~~~~l----dG~~~~~l~~--~~l~~P~~iavD~~~g~LYw 606 (734)
.+...+..|.||++- +.++.+|..- ...+.+....| +|.....++. ....+|.|+++|...|+||+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEE
Confidence 122355678899984 4556666543 23466666554 3332222322 22358999999999999999
Q ss_pred EecCCCceEEEeccC---CCceEEEEEc---CC-CCceeEEEecC---CCeEEEEeCCCCeEEEEecCCCc
Q psy8875 607 SDWGQNAKIERAGMD---GSHRNMVIVS---DI-KWPNGLTLDLV---QRRLYWVDAKLNEISSCDYNGGN 667 (734)
Q Consensus 607 td~~~~~~I~~~~ld---G~~~~~lv~~---~l-~~P~glavD~~---~~~LYw~D~~~~~I~~~~~dG~~ 667 (734)
.+. ...||+...+ +..++.+... .+ .-..||+|=+. .++|.+++.+.+....++..+.+
T Consensus 225 gEE--~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 225 GEE--DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EET--TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred ecC--ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 994 5789998886 3334433221 12 45679999432 45788888888888888877753
No 100
>KOG4289|consensus
Probab=97.38 E-value=0.0017 Score=76.64 Aligned_cols=78 Identities=33% Similarity=0.750 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccc---cCcCCCCCccc--ceeccC-C
Q psy8875 375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI---DECETPGSCSQ--ICLNEK-G 448 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~---~eC~~~~~C~~--~C~n~~-g 448 (734)
.||+||+++.+.-++++|-..+++-...|....++|+|.|.+|| -|.+|+-. ..|. ++.|.. +|+|.. |
T Consensus 1225 rCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~----tGehCEvs~~agrCv-pGvC~nggtC~~~~ng 1299 (2531)
T KOG4289|consen 1225 RCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGF----TGEHCEVSARAGRCV-PGVCKNGGTCVNLLNG 1299 (2531)
T ss_pred eCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCc----cccceeeecccCccc-cceecCCCEEeecCCC
Confidence 88999988854447899987665556689999999999999999 67778532 2333 566743 888875 7
Q ss_pred ceEEecCCC
Q psy8875 449 GFKCECVAG 457 (734)
Q Consensus 449 ~~~C~C~~g 457 (734)
+|.|.|+.|
T Consensus 1300 gf~c~Cp~g 1308 (2531)
T KOG4289|consen 1300 GFCCHCPYG 1308 (2531)
T ss_pred ceeccCCCc
Confidence 899999998
No 101
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.25 E-value=0.017 Score=65.27 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=114.8
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee--ccCCcEE-----------------EEeCCCCeEEEE
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD--WIYSHIY-----------------WTDAHKNTIELA 574 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD--~~~~~lY-----------------~td~~~~~I~~~ 574 (734)
.+.||+-|..+.+|-|++++.-...+++.-.+.....|+++. +.++.+| .+....+.+.++
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 678888888899999999984332333333355555666665 3333333 232223445555
Q ss_pred eCCCCce--EEEEcCCCCCceeEEEeCCCCeEEEEecCC-------------CceEEEecc--------CCC------ce
Q psy8875 575 NFEGTMR--KVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-------------NAKIERAGM--------DGS------HR 625 (734)
Q Consensus 575 ~ldG~~~--~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-------------~~~I~~~~l--------dG~------~~ 625 (734)
+.+.... ++++ ..+|+.+++++..+++|++.... ...+...+. +|. ++
T Consensus 221 D~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~ 297 (635)
T PRK02888 221 DAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSK 297 (635)
T ss_pred ECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCE
Confidence 5443211 1222 23899999999988999995211 001111111 121 11
Q ss_pred EEEEE---------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc---------eEEEEcCCCCCCCC
Q psy8875 626 NMVIV---------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN---------RRLVLYSPQTLSHP 681 (734)
Q Consensus 626 ~~lv~---------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~---------~~~i~~~~~~~~~P 681 (734)
..++. .--..|.||++++.+.+||.+....+.|..+++.... +.+++........|
T Consensus 298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 11111 1125699999999999999999989999998876422 34444444445578
Q ss_pred eEEEEEC-CEEEEEeCCCCceEEEec
Q psy8875 682 FSISTFE-DWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 682 ~gl~v~~-~~lywtd~~~~~v~~~~~ 706 (734)
.-.++++ ++.|.|-.-...|.+.|.
T Consensus 378 LHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred ceEEECCCCCEEEeEeecceeEEEeh
Confidence 8888854 589988877777777764
No 102
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.24 E-value=0.049 Score=55.30 Aligned_cols=159 Identities=15% Similarity=0.096 Sum_probs=99.6
Q ss_pred cceeeeccCCcEEEEeCCC--CeEEEEeCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 550 DGLAVDWIYSHIYWTDAHK--NTIELANFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~--~~I~~~~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
.||.++ ..+.||-+.... .+|.+.++..... ...--....--.||++ .+++||...|.+ +...+.+.+.-...
T Consensus 48 QGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~--~~d~l~qLTWk~-~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 48 QGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI--LGDKLYQLTWKE-GTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE--ETTEEEEEESSS-SEEEEEETTTTEEE
T ss_pred ccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE--ECCEEEEEEecC-CeEEEEccccceEE
Confidence 477774 357888886653 4788888875443 2222233334578998 478999999964 67788777643222
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC-ceEE--EEcCCCCCCCCeEEEEECCEEEEEeCCCCceEE
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG-NRRL--VLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYK 703 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~--i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~ 703 (734)
.-+.- ....-||+-| ++.||.+|. +.+|+..+...- ..+. |......+..-.-|.+.+|.||.--|.+..|.+
T Consensus 124 ~~~~y-~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEE
Confidence 11111 1345689965 788998885 678998886532 2222 222222233445678889999999999999999
Q ss_pred EeccCCCceEEEe
Q psy8875 704 ANKFTGDNLTAIT 716 (734)
Q Consensus 704 ~~~~~G~~~~~l~ 716 (734)
|++.+|+.+..+-
T Consensus 200 Idp~tG~V~~~iD 212 (264)
T PF05096_consen 200 IDPETGKVVGWID 212 (264)
T ss_dssp EETTT-BEEEEEE
T ss_pred EeCCCCeEEEEEE
Confidence 9999999988874
No 103
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.20 E-value=0.31 Score=49.18 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=104.3
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe-CCCCceEEE-EcC----
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN-FEGTMRKVL-VRS---- 587 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~-ldG~~~~~l-~~~---- 587 (734)
.++||..+ ..+.|+.+++..|...-. .. +..+...+.-...+.||+.... ++|+..+ .+|+..-.+ ...
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~-~~--~~~~~~~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWR-FD--LPGPISGAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEE-EE--CSSCGGSGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEE-ee--ccccccceeeecccccccccce-eeeEecccCCcceeeeecccccccc
Confidence 77888874 677888888765543211 11 1222211112246888888753 4888888 566665543 211
Q ss_pred CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEcCCCCc-------------eeEEEecCCCeEEEEeC
Q psy8875 588 YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVSDIKWP-------------NGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 588 ~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~~l~~P-------------~glavD~~~~~LYw~D~ 653 (734)
.+..+...+++ .+.+|.... .+.|...++. |..+... .+..| ..+.+ .+++||++..
T Consensus 111 ~~~~~~~~~~~--~~~~~~~~~--~g~l~~~d~~tG~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 181 (238)
T PF13360_consen 111 GVRSSSSPAVD--GDRLYVGTS--SGKLVALDPKTGKLLWKY---PVGEPRGSSPISSFSDINGSPVI--SDGRVYVSSG 181 (238)
T ss_dssp STB--SEEEEE--TTEEEEEET--CSEEEEEETTTTEEEEEE---ESSTT-SS--EEEETTEEEEEEC--CTTEEEEECC
T ss_pred ccccccCceEe--cCEEEEEec--cCcEEEEecCCCcEEEEe---ecCCCCCCcceeeecccccceEE--ECCEEEEEcC
Confidence 12234455554 677777773 4677777754 4332222 11221 22333 3669999886
Q ss_pred CCCeEEEEecCCCceEEEEcCCCCCCCCeE-EEEECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFS-ISTFEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~g-l~v~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
... +..+++....+. . .. . +..+.+ +...++.||+++ ..+.|+.+++.+|+.+-
T Consensus 182 ~g~-~~~~d~~tg~~~-w-~~-~-~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 182 DGR-VVAVDLATGEKL-W-SK-P-ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TSS-EEEEETTTTEEE-E-EE-C-SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEE
T ss_pred CCe-EEEEECCCCCEE-E-Ee-c-CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEe
Confidence 544 555576655543 2 22 2 445555 566899999999 67899999999998653
No 104
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.18 E-value=0.069 Score=59.60 Aligned_cols=178 Identities=7% Similarity=0.015 Sum_probs=108.7
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+..++.+.....+........+++|.+...+|+++....+ .|+.++++++.. ..+.. .......+++.+.++.|
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSI 306 (429)
T ss_pred EEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEE
Confidence 477778776655544332223446788888888888643333 588888875433 33322 33345567787777778
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gl 639 (734)
+++... ..+|+++++++...+.+ .... ..+++.|...+|+++.. ..|.+.++.+...+.+. ... .-..+
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt-~~~-~~~~~ 377 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLS-STF-LDESP 377 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEec-CCC-CCCCc
Confidence 877543 45788888877655444 2221 34567887788887752 45777777655444332 222 22456
Q ss_pred EEecCCCeEEEEeCC--CCeEEEEecCCCceEEEE
Q psy8875 640 TLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 640 avD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~ 672 (734)
++.+.+..|+++... ...++.++.+|...+.+.
T Consensus 378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 788778888887542 223455567888777664
No 105
>KOG1446|consensus
Probab=97.11 E-value=0.26 Score=50.37 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=118.9
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+.+|+|+.....| .+......|+..+...|.....+.... ..+. ..-++..+..||-+......|+-.++....
T Consensus 14 ~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 4577889998654444 444445567777776666555554321 1111 112233444566555556788888886665
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
....+.+.-....+|.+.|.. -.|.+..- ...|..-++.-.+-+.++. +..+.-.|+| .+|.|+.+-.+...|..
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~-D~tvrLWDlR~~~cqg~l~--~~~~pi~AfD-p~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKD-DTFLSSSL-DKTVRLWDLRVKKCQGLLN--LSGRPIAAFD-PEGLIFALANGSELIKL 166 (311)
T ss_pred eEEEcCCCCceEEEEEecCCC-CeEEeccc-CCeEEeeEecCCCCceEEe--cCCCcceeEC-CCCcEEEEecCCCeEEE
Confidence 555556777888999999976 77877632 3466666665444444432 3445568888 56667666666667877
Q ss_pred EecC---CC-ceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 661 CDYN---GG-NRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 661 ~~~d---G~-~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+++. .. .....+.. .....-..|.+ .+..|.++... +.++.++.++|.....+
T Consensus 167 yD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGTVKSTF 225 (311)
T ss_pred EEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCcEeeeE
Confidence 7743 22 23222221 12223345555 34555555543 55677777777755444
No 106
>KOG4289|consensus
Probab=97.09 E-value=0.00043 Score=81.46 Aligned_cols=85 Identities=27% Similarity=0.660 Sum_probs=72.6
Q ss_pred CCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecC--cCCCCCCCCCCCCCCCCCCCC-----CCCCCcee
Q psy8875 199 PKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPS--TWVCDGQNDCPDGVDEKKCHE-----TCRSDEFT 271 (734)
Q Consensus 199 ~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~--~~~Cdg~~dC~dg~de~~C~~-----~C~~~~~~ 271 (734)
+...|.||+||++..|+...+.|.+.+|. ++|+|... .+.|. |.+|+.+.+|+. .|.++.
T Consensus 1220 nglrCrCPpGFTgd~CeTeiDlCYs~pC~-------nng~C~srEggYtCe----Crpg~tGehCEvs~~agrCvpGv-- 1286 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDYCETEIDLCYSGPCG-------NNGRCRSREGGYTCE----CRPGFTGEHCEVSARAGRCVPGV-- 1286 (2531)
T ss_pred CceeEeCCCCCCcccccchhHhhhcCCCC-------CCCceEEecCceeEE----ecCCccccceeeecccCccccce--
Confidence 46789999999999999999999999999 47888765 78888 999999999972 688875
Q ss_pred cCCC-CeecC---CcccCCCCCCCCCCCC-CCCC
Q psy8875 272 CANG-NCIQR---IWLCDGDDDCKDGSDE-KSCQ 300 (734)
Q Consensus 272 C~~g-~Ci~~---~~~Cdg~~dC~dgsDe-~~C~ 300 (734)
|.|| +|++. .+.| +|+.|.+| ..|+
T Consensus 1287 C~nggtC~~~~nggf~c----~Cp~ge~e~prC~ 1316 (2531)
T KOG4289|consen 1287 CKNGGTCVNLLNGGFCC----HCPYGEFEDPRCE 1316 (2531)
T ss_pred ecCCCEEeecCCCceec----cCCCcccCCCceE
Confidence 9998 99765 7788 89999887 5686
No 107
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.04 E-value=0.13 Score=54.12 Aligned_cols=198 Identities=14% Similarity=0.154 Sum_probs=114.9
Q ss_pred eeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--CCceEEEE
Q psy8875 509 DFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--GTMRKVLV 585 (734)
Q Consensus 509 ~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~l~ 585 (734)
++....+.+|+.+... ..|-.+++..+.. +. .+..|.-.-|-|....=|.+-=+.+++..+.|+ |+..+...
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv---v~--ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKV---VG--EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEE---EE--EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCce---ee--eecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 4444588999998764 5688888874322 21 233444333333333335555556778777775 44332111
Q ss_pred --cCCCCCce--eEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC--------CC-ce---eEEEecCCCeEE
Q psy8875 586 --RSYLDEPR--SLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI--------KW-PN---GLTLDLVQRRLY 649 (734)
Q Consensus 586 --~~~l~~P~--~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l--------~~-P~---glavD~~~~~LY 649 (734)
-.....|. .=+.....+.+||... .+.|+.+++.|...+..-.-.+ .| |- -+|++...++||
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy--~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSY--EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBT--TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEec--CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 01112221 1123345678888774 5899999999887654332111 11 32 388998999999
Q ss_pred EEeC----CC-----CeEEEEecCCCceEEEEcCCCCCCCCe-EEEEE---CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 650 WVDA----KL-----NEISSCDYNGGNRRLVLYSPQTLSHPF-SISTF---EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 650 w~D~----~~-----~~I~~~~~dG~~~~~i~~~~~~~~~P~-gl~v~---~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+.-. ++ ..||.+++....|..-+. +.+|. +|++. .-.||-++.+.+.|...+..+|+.+..+.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 8731 11 279998887666554442 34444 78884 34788888888899999999999888876
Q ss_pred c
Q psy8875 717 G 717 (734)
Q Consensus 717 ~ 717 (734)
.
T Consensus 330 ~ 330 (342)
T PF06433_consen 330 Q 330 (342)
T ss_dssp -
T ss_pred c
Confidence 4
No 108
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.03 E-value=0.0015 Score=42.06 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=25.0
Q ss_pred CCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 633 IKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 633 l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
+..|.||++| .++.||++|.++++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 899999999999999863
No 109
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.98 E-value=0.078 Score=56.91 Aligned_cols=120 Identities=22% Similarity=0.293 Sum_probs=72.5
Q ss_pred CCCCCceeEEE--eCCCCeEEEEecCCCceEEEecc--CCC--ceEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875 587 SYLDEPRSLAL--NPIDGWMYWSDWGQNAKIERAGM--DGS--HRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEI 658 (734)
Q Consensus 587 ~~l~~P~~iav--D~~~g~LYwtd~~~~~~I~~~~l--dG~--~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I 658 (734)
..+..|.|+++ ++..|.+|..-.++.+.++...| ++. ..-.++. ..-..|.|+++|-..++||+++-. ..|
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GI 231 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGI 231 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEE
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEE
Confidence 34567889998 45677777665445566655544 333 2223332 123578999999999999999965 589
Q ss_pred EEEecC---CCceEEEEcC--CCCCCCCeEEEEE-----CCEEEEEeCCCCceEEEecc
Q psy8875 659 SSCDYN---GGNRRLVLYS--PQTLSHPFSISTF-----EDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 659 ~~~~~d---G~~~~~i~~~--~~~~~~P~gl~v~-----~~~lywtd~~~~~v~~~~~~ 707 (734)
|+++.+ +..++.+... .......-||+++ .++|.+++-+.++....++.
T Consensus 232 W~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 232 WRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 999976 3344444321 2233456799984 36899999888876666543
No 110
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.17 Score=51.34 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=100.8
Q ss_pred eeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC
Q psy8875 509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS 587 (734)
Q Consensus 509 ~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~ 587 (734)
++-..++++|++|+..+ |+.+++......+.+-.-+. ....+++| .++..|++|+..+ ....++......+|. +
T Consensus 91 Dv~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddg-fLivdvsdpssP~la-g 165 (370)
T COG5276 91 DVRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDG-FLIVDVSDPSSPQLA-G 165 (370)
T ss_pred eeEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCc-EEEEECCCCCCceee-e
Confidence 33345889999997665 45555543333322211111 12233333 4778999998544 344555443333333 2
Q ss_pred CCCCc----eeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 588 YLDEP----RSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 588 ~l~~P----~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
....| ..++| ..++-|.+.++. .+...+.......+++..--..|..-++-+..+|.|.++...+ +.-++.
T Consensus 166 rya~~~~d~~~v~I--SGn~AYvA~~d~--GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~ 240 (370)
T COG5276 166 RYALPGGDTHDVAI--SGNYAYVAWRDG--GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDV 240 (370)
T ss_pred eeccCCCCceeEEE--ecCeEEEEEeCC--CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEec
Confidence 23333 34666 466778777643 3444454444444454432222444445557899999987654 555667
Q ss_pred CCCceEEEEcCCCCCCCCeEE---EEECCEEEEEeCCCCc
Q psy8875 664 NGGNRRLVLYSPQTLSHPFSI---STFEDWLYWSDWQQKA 700 (734)
Q Consensus 664 dG~~~~~i~~~~~~~~~P~gl---~v~~~~lywtd~~~~~ 700 (734)
++....+++.. -....|.++ .+.+++.|++|...+.
T Consensus 241 s~~ssp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl 279 (370)
T COG5276 241 SGPSSPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGL 279 (370)
T ss_pred CCCCCceEeec-cccCCcccccceecccceeeeeccccCc
Confidence 77654444432 234556665 7789999999987553
No 111
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.069 Score=57.65 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=96.5
Q ss_pred ceEEEeeeccCCeEEEEEeCC-------------CcEEEEecCCC------CceEEEEeCCCCCccceeeeccCCcEEEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISE-------------KKIYKAPIDEG------SERTVVIEEDKTIADGLAVDWIYSHIYWT 564 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~-------------~~I~~~~l~~g------~~~~~~~~~~~~~p~glAvD~~~~~lY~t 564 (734)
....|+|++.. +||++-... ++|.++..++. .....+...++.+|.|+++++.++.||.+
T Consensus 178 ~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~ 256 (399)
T COG2133 178 FGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTT 256 (399)
T ss_pred CcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEE
Confidence 44678888855 999974332 34555443311 11223444588999999999999999999
Q ss_pred eCCCCeE------EEE---------------eCCCCc------eEEE-----EcCCCCCceeEEEeCC------CCeEEE
Q psy8875 565 DAHKNTI------ELA---------------NFEGTM------RKVL-----VRSYLDEPRSLALNPI------DGWMYW 606 (734)
Q Consensus 565 d~~~~~I------~~~---------------~ldG~~------~~~l-----~~~~l~~P~~iavD~~------~g~LYw 606 (734)
+.+...+ .+. +.+|.. ...+ ....-..|.||++-.- ++.||+
T Consensus 257 e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV 336 (399)
T COG2133 257 EHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFV 336 (399)
T ss_pred ecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEE
Confidence 9876322 111 011111 0000 1112235678887421 267888
Q ss_pred EecCCCceEEEeccCCCce---EEEEEcC-CCCceeEEEecCCCeEEEEeCC-CCeEEEEecCC
Q psy8875 607 SDWGQNAKIERAGMDGSHR---NMVIVSD-IKWPNGLTLDLVQRRLYWVDAK-LNEISSCDYNG 665 (734)
Q Consensus 607 td~~~~~~I~~~~ldG~~~---~~lv~~~-l~~P~glavD~~~~~LYw~D~~-~~~I~~~~~dG 665 (734)
...+. -.+.+.+.+|..+ +.++..+ -..|.++++. ..+.||++|.. .++|+|+.+.+
T Consensus 337 ~~hgs-w~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 337 GAHGS-WPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred Eeecc-eeEEEeccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeecCCCCeEEEecCCC
Confidence 88764 3567788888733 2233322 2589999997 56677777654 77999998765
No 112
>KOG0291|consensus
Probab=96.84 E-value=0.52 Score=53.56 Aligned_cols=160 Identities=9% Similarity=0.019 Sum_probs=103.5
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~ 580 (734)
..++..++|.+ .+.+..+-...++|...+...|. -.+.+...-....++.+- ..++..++-+..++|+..+|. .+.
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccce
Confidence 45677888886 45566677778888888877443 333344444566777776 556677777777778777773 445
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
-+++....-.+-.-|||||.+..+...+ -....|++.++.-....-+++..-.-..+|++++.+..|+-..| .++|..
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~-~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRi 504 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGA-QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRI 504 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeec-cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEE
Confidence 5555545555667899999655554444 34578888887655444455555555578999988887775554 355665
Q ss_pred EecCCC
Q psy8875 661 CDYNGG 666 (734)
Q Consensus 661 ~~~dG~ 666 (734)
.++-++
T Consensus 505 W~if~s 510 (893)
T KOG0291|consen 505 WDIFSS 510 (893)
T ss_pred EEeecc
Confidence 555444
No 113
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.82 E-value=0.18 Score=53.99 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=89.6
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
+.+.......|.+.+.+|...+.+. ..+....++++++...++-+++ ....|+.++++..+.+.+-.+....-.+++
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~ 450 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFD 450 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeEecccccceeEEEE
Confidence 3344444568999999988766554 7888999999998766777776 357999999998888776555555566777
Q ss_pred EecCCCeEEEEeC---CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCC
Q psy8875 641 LDLVQRRLYWVDA---KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQ 697 (734)
Q Consensus 641 vD~~~~~LYw~D~---~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~ 697 (734)
+.+....|-++=. .+..|..++++|.....+.+. -.+-++-|+ .+.+||+....
T Consensus 451 ~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred EcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCCCcEEEEEecc
Confidence 7655555544422 345788888888766555432 233444444 67889987543
No 114
>KOG0279|consensus
Probab=96.82 E-value=0.44 Score=47.99 Aligned_cols=205 Identities=10% Similarity=0.028 Sum_probs=136.6
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
.+..++..+ .+..+++-.-.+.++..++.+|.....+. .-.....++||.+.++ -.++-+...+|...+.-|.-..+
T Consensus 65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYT 141 (315)
T ss_pred EecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEE
Confidence 344555554 45555665667788888888664443333 3445678899986554 45677778899999988887777
Q ss_pred EEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 584 LVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 584 l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
+.... ..+..-+.+.|.....|+...+....+..-++++-..+..........+.+++. ..|.|--.-.+.+.+...+
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEE
Confidence 77655 778889999998766666665655677777888766655555566778899997 4666666667778899888
Q ss_pred cCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 663 YNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 663 ~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++.+..-.-+ .....-.+|++..++++..-....+|...+..++..+..+
T Consensus 221 L~~~k~lysl---~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 221 LNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred ccCCceeEec---cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 8765442211 2233345666666655555544456666677666665554
No 115
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.72 E-value=0.3 Score=54.07 Aligned_cols=227 Identities=13% Similarity=0.117 Sum_probs=117.0
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
.++..+.++.....+.........-+|.+....|.++.... .+|+..+++.+....+ +. -...-...++-+.+++
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-ec-cCCccCCccCCCCCCE
Confidence 34445555555555544333334445555566655554443 3488888885544333 33 1122234455556777
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE-EEEecCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM-YWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L-Ywtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|.++... ...|++++++++....|.... ..-..=.+.|...+| |.+|.+..+.|++++++|+..+.+....- ...
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-GNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-CCc
Confidence 7777655 457999999998865544221 111122334445555 45565556899999999998755543322 222
Q ss_pred eEEEecCCCeEEEEeCCCCe--EEEEecCCCceEEEEcCCCCCCCCeEEEEECCE-EEEEeCCCCceEEEeccCCCceEE
Q psy8875 638 GLTLDLVQRRLYWVDAKLNE--ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDW-LYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~--I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~-lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
--.+.+.+.+|-+.....+. |...++.......++.... ...+-..+..+.. +|.+....+.+...-..+|.....
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~-~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~ 408 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY-LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRP 408 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc-cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEE
Confidence 33455556666666533333 5555543333133333322 2222234443333 333344444554444556665544
Q ss_pred E
Q psy8875 715 I 715 (734)
Q Consensus 715 l 715 (734)
+
T Consensus 409 ~ 409 (425)
T COG0823 409 L 409 (425)
T ss_pred E
Confidence 3
No 116
>KOG1225|consensus
Probab=96.71 E-value=0.0069 Score=67.24 Aligned_cols=132 Identities=25% Similarity=0.591 Sum_probs=88.7
Q ss_pred CCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCC-CceEeCccc
Q psy8875 75 DGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGN-NRCIPNHWQ 153 (734)
Q Consensus 75 dg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~-g~Ci~~~~~ 153 (734)
|+...|.+++-...|....|+.. |.+. |+|. +|+.-|++|+...+|....|+.. |.. +.|++
T Consensus 233 ~~ic~c~~~~~g~~c~~~~C~~~---c~~~-g~c~------~G~CIC~~Gf~G~dC~e~~Cp~~---cs~~g~~~~---- 295 (525)
T KOG1225|consen 233 DGICECPEGYFGPLCSTIYCPGG---CTGR-GQCV------EGRCICPPGFTGDDCDELVCPVD---CSGGGVCVD---- 295 (525)
T ss_pred CceeecCCceeCCccccccCCCC---Cccc-ceEe------CCeEeCCCCCcCCCCCcccCCcc---cCCCceecC----
Confidence 45566778888888877777653 3332 4443 34556888898888876667654 332 23333
Q ss_pred cCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCCCCCCCCCcee
Q psy8875 154 CDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFR 233 (734)
Q Consensus 154 Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~ 233 (734)
|+..|.+|+-... |+. .+|+..|.+.+.|.+ -+|.|.+||+|..|... .|. +..+
T Consensus 296 --g~CiC~~g~~G~d--------Cs~--~~cpadC~g~G~Ci~----G~C~C~~Gy~G~~C~~~-------~C~--~~g~ 350 (525)
T KOG1225|consen 296 --GECICNPGYSGKD--------CSI--RRCPADCSGHGKCID----GECLCDEGYTGELCIQR-------ACS--GGGQ 350 (525)
T ss_pred --CEeecCCCccccc--------ccc--ccCCccCCCCCcccC----CceEeCCCCcCCccccc-------ccC--CCce
Confidence 3445777877766 653 237777777777763 47999999999887765 365 6777
Q ss_pred eCCCceecCcCCCCCCCCCCCCCCCCC
Q psy8875 234 CTGGMCIPSTWVCDGQNDCPDGVDEKK 260 (734)
Q Consensus 234 C~~g~Ci~~~~~Cdg~~dC~dg~de~~ 260 (734)
|.+| |+ |.+|+-+.+
T Consensus 351 cv~g-C~-----------C~~Gw~G~d 365 (525)
T KOG1225|consen 351 CVNG-CK-----------CKKGWRGPD 365 (525)
T ss_pred eccC-ce-----------eccCccCCC
Confidence 7777 77 888887665
No 117
>KOG0291|consensus
Probab=96.53 E-value=0.56 Score=53.28 Aligned_cols=212 Identities=10% Similarity=0.040 Sum_probs=123.4
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.......|+.|.. .+++.++..-.++|...++........+..+...+-.-||||+.+..+.......-.|++.++...
T Consensus 390 eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 390 EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 3445667777774 555556666677887777775544444444344455689999877767766666778999999776
Q ss_pred ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeE-
Q psy8875 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEI- 658 (734)
Q Consensus 580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I- 658 (734)
...-++.+.-....+|+++|....|+=..|...-+||-+--.-+..+++-. .....++++-|.+..|-++... +.|
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTld-gqIt 545 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATLD-GQIT 545 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEec-ceEE
Confidence 666666666666778999999998888888765566554322222333321 1223456666666666666432 122
Q ss_pred --------EEEecCCC-------c-eEEEEcCCCCCCCCe-EEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 659 --------SSCDYNGG-------N-RRLVLYSPQTLSHPF-SIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 659 --------~~~~~dG~-------~-~~~i~~~~~~~~~P~-gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
.+-.++|. . ..++.........++ .|.+ +.|....+-..++.|-.++..++..++.+
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 22222321 1 111222122233343 4666 45556666556666666665666555544
No 118
>KOG1225|consensus
Probab=96.53 E-value=0.011 Score=65.79 Aligned_cols=15 Identities=20% Similarity=-0.018 Sum_probs=8.9
Q ss_pred CceecCCCceecCcC
Q psy8875 58 TMFRCTGGMCIPSTW 72 (734)
Q Consensus 58 ~~f~C~~g~Ci~~~~ 72 (734)
..+.+..|+|.....
T Consensus 99 ~~~~~~~g~~~~~~~ 113 (525)
T KOG1225|consen 99 GGGICSLGKCELFFG 113 (525)
T ss_pred cccccccceeeeeec
Confidence 556666666665544
No 119
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.52 E-value=0.0047 Score=39.80 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
+..|.|||+| ..++||++|..+++|.+.
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 3579999999 889999999999999763
No 120
>KOG0315|consensus
Probab=96.47 E-value=1.1 Score=44.62 Aligned_cols=184 Identities=10% Similarity=0.047 Sum_probs=110.1
Q ss_pred ceeeeeec--cceEEee-cCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCcc
Q psy8875 475 ASLLFARK--HDIRKIS-LDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIAD 550 (734)
Q Consensus 475 ~~l~~~~~--~~I~~i~-l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~ 550 (734)
+.+|.+.+ +.||--. +.|.-...+-.......+|.+-+..+.|-. .....|+.++++.++. ....+...-.++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCCceeEEeccCCceE
Confidence 44555443 3454333 344444555555566777777765554433 3456677777776555 3333333335667
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVI 629 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv 629 (734)
.+.+...++.+| |.+..+.+.+.+|.......++.. ....+.|+++|..+.|+..|. ++.|+.-++.-. -...++
T Consensus 88 aVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dq--sg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 88 AVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQ--SGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEeecCeEEE-ecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecC--CCcEEEEEccCCccccccC
Confidence 777775555454 666678888888866443334422 255689999999999999994 467777766433 223345
Q ss_pred EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
.+.......|+|++.+.+|--+ ..++..+.-++-+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLN 198 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccC
Confidence 4555556789998766655444 3455566555443
No 121
>KOG0289|consensus
Probab=96.45 E-value=1.1 Score=47.90 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=119.0
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
.......++..++.+.++.|++. .+.+--.++..|....++... .-.....+++++ .+.||.+-...+.|.+.++..
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~-d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASN-DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccceeeeeccCCcEEEEecC-CceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 34445678888888888888764 333333344445554444332 222356778874 588999988888888888875
Q ss_pred CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
.....-+.......+.|++. .+||...+... ...|.-.++-- .+.+++........+.+.+|..+.+|-.+ ...-+
T Consensus 379 ~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~ad-d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~ 455 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFS-ENGYWLATAAD-DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQ 455 (506)
T ss_pred ccccccCCCCCCceeEEEec-cCceEEEEEec-CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeE
Confidence 55333333445567889986 57766666543 23354444421 23344444444457889999777766655 33335
Q ss_pred EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875 658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~ 705 (734)
|+.+.....+-+.+.......+.-.++.+-+...|.++....+++++-
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 555554444433333322223344566676777888887777776653
No 122
>PTZ00421 coronin; Provisional
Probab=96.41 E-value=2.4 Score=48.03 Aligned_cols=120 Identities=10% Similarity=0.033 Sum_probs=75.2
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL 573 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~ 573 (734)
.....+.+|+|++..+.++.+-...+.|...++..+.. ....+......+..|++.+..++++++-...+.|.+
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 34456789999885555566666677887777653321 112222223456678888776677777777889999
Q ss_pred EeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875 574 ANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 574 ~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld 621 (734)
.++........+........+|++.|. |.++++-. ..+.|...++.
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs-~Dg~IrIwD~r 198 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTS-KDKKLNIIDPR 198 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEec-CCCEEEEEECC
Confidence 998755444444444456788999885 44555442 34566666654
No 123
>KOG0273|consensus
Probab=96.39 E-value=0.94 Score=48.80 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=86.8
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
+..++....+|.....+...-..+.+|-|.....+|. +-...+++...+...|.....+ .+....+|.|||.+..-
T Consensus 256 ~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f---~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 256 DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQF---EFHSAPALDVDWQSNDE 331 (524)
T ss_pred CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEee---eeccCCccceEEecCce
Confidence 3445556667665555544555667888875444443 3334566666665534432222 24455589999999999
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCC
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDG 622 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG 622 (734)
|.+-...+.|++..+++.....-+.+.-....+|-.+|. |.|.-+-.. ..-+||...-++
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc
Confidence 999998999999999887765555456667889999985 555555422 234666654433
No 124
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.28 E-value=0.0038 Score=43.51 Aligned_cols=35 Identities=40% Similarity=1.011 Sum_probs=25.7
Q ss_pred ccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCcc
Q psy8875 389 VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTC 427 (734)
Q Consensus 389 ~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C 427 (734)
+++|... ..|.+ .|++++++|.|.|++||. +++.|
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 5667642 34654 899999999999999995 35555
No 125
>KOG0285|consensus
Probab=96.27 E-value=0.75 Score=47.86 Aligned_cols=224 Identities=12% Similarity=0.059 Sum_probs=130.1
Q ss_pred ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|...++........++ ......+|++..+.-+||-. ...+.|.-.+|.. .....-..+-+..+..|++.|.- .
T Consensus 172 DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~-gedk~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTl-d 248 (460)
T KOG0285|consen 172 DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA-GEDKQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTL-D 248 (460)
T ss_pred CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe-cCCCeeEEEechh-hhhHHHhccccceeEEEeccccc-e
Confidence 3456666777666655555 35567899998766665544 2355666677762 22111122356677888888654 4
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcCCCCceeE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSDIKWPNGL 639 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~l~~P~gl 639 (734)
+.+|-.....|.+.++..+....++.+.-.....+..-|.+..||-... ...|.--++ .|....++.. .-....+|
T Consensus 249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~--D~tvrlWDl~agkt~~tlt~-hkksvral 325 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH--DSTVRLWDLRAGKTMITLTH-HKKSVRAL 325 (460)
T ss_pred eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC--CceEEEeeeccCceeEeeec-ccceeeEE
Confidence 5566666778999999887766666555555556666666555554432 233333333 2322333322 22335677
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 640 TLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 640 avD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
++.+. ..+ ++.+..+.|...++- |....- ++. .-.-...|++..+-+|++-..++.|+..+-.+|-+.+.+.
T Consensus 326 ~lhP~-e~~-fASas~dnik~w~~p~g~f~~n-lsg--h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 326 CLHPK-ENL-FASASPDNIKQWKLPEGEFLQN-LSG--HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred ecCCc-hhh-hhccCCccceeccCCccchhhc-ccc--ccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence 77543 334 355556677776643 332222 221 1222346777888899998888888888777777666553
No 126
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.26 E-value=0.0034 Score=38.48 Aligned_cols=23 Identities=26% Similarity=0.865 Sum_probs=19.8
Q ss_pred ceEEecCCCeeeCCCCCccccccc
Q psy8875 449 GFKCECVAGYIKDPHHPTQCKAAE 472 (734)
Q Consensus 449 ~~~C~C~~gy~~~~~~~t~C~~~~ 472 (734)
||+|.|++||.+.+++++ |.+++
T Consensus 1 sy~C~C~~Gy~l~~d~~~-C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRS-CEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCc-cccCC
Confidence 699999999999988766 98764
No 127
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.23 E-value=0.0017 Score=44.44 Aligned_cols=31 Identities=35% Similarity=0.946 Sum_probs=18.0
Q ss_pred CCCCCc--CccccCCCcceeecCCCcEecCCCCcc
Q psy8875 395 DNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTC 427 (734)
Q Consensus 395 ~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C 427 (734)
++++|. +.|.+++++|+|.|++||.. ||..|
T Consensus 4 ~~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 4 NNGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 344553 46777777888888888765 45443
No 128
>KOG2397|consensus
Probab=96.20 E-value=0.0043 Score=66.70 Aligned_cols=70 Identities=36% Similarity=0.637 Sum_probs=57.4
Q ss_pred CCceecCCC-ceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCC--CeeeCCCCCCCCCCCCCCCCCcC
Q psy8875 57 STMFRCTGG-MCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP--GECVPLTWMCDDNPDCSDGSDEK 128 (734)
Q Consensus 57 ~~~f~C~~g-~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~--~~Ci~~~~~Cdg~~dC~dg~de~ 128 (734)
...|+|.+| .=|+...+=|...||.||+||.. ...|+...|+|.|.. ..=||.+.+=||+.||=||+||.
T Consensus 42 s~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPG--tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~ 114 (480)
T KOG2397|consen 42 SSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPG--TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEY 114 (480)
T ss_pred ccceeeccCCcccCHHHhccccccCCCCCCCCc--cccCCCCceeeeecCCCceeeechhccCcccccccCCCCc
Confidence 358999987 77899999999999999999963 346888999998751 24678888889999999999885
No 129
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.18 E-value=0.29 Score=52.39 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=70.4
Q ss_pred CceeEEEeCCCCeEEEEecCC-----CceEEEeccCCCceEEE-EEcCC-------------CCceeEEEecCCCeEEEE
Q psy8875 591 EPRSLALNPIDGWMYWSDWGQ-----NAKIERAGMDGSHRNMV-IVSDI-------------KWPNGLTLDLVQRRLYWV 651 (734)
Q Consensus 591 ~P~~iavD~~~g~LYwtd~~~-----~~~I~~~~ldG~~~~~l-v~~~l-------------~~P~glavD~~~~~LYw~ 651 (734)
.+.+|++ +..|.+||++.+. .++|++++++|...+.+ +...+ .-..|||+.+.+.+||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 7779999 6789999999653 28999999999875544 22211 124589999887778877
Q ss_pred eCC-------C--------CeEEEEecCC--C-ceEEEEcCCC-----CCCCCeEE-EEECCEEEEEeCC-------CCc
Q psy8875 652 DAK-------L--------NEISSCDYNG--G-NRRLVLYSPQ-----TLSHPFSI-STFEDWLYWSDWQ-------QKA 700 (734)
Q Consensus 652 D~~-------~--------~~I~~~~~dG--~-~~~~i~~~~~-----~~~~P~gl-~v~~~~lywtd~~-------~~~ 700 (734)
--. . -+|.+++... . ....++.... ....+..| ++.+++|++.+.. ..+
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 321 1 2566666542 1 1222222111 12334344 4467789998766 345
Q ss_pred eEEEecc
Q psy8875 701 IYKANKF 707 (734)
Q Consensus 701 v~~~~~~ 707 (734)
|++++..
T Consensus 245 i~~v~l~ 251 (326)
T PF13449_consen 245 IYRVDLS 251 (326)
T ss_pred EEEEEcc
Confidence 6666643
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.18 E-value=2.4 Score=51.33 Aligned_cols=161 Identities=9% Similarity=0.011 Sum_probs=92.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC----Cc---eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG----SE---RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g----~~---~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
...+.+|+|++.. .++.+-...+.|...++... .. ....+. ....+.+++..+..+.+..+-...+.|.+.
T Consensus 483 ~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 483 SNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 3457789999754 44445455677776665321 10 011111 223345566654445566666667889999
Q ss_pred eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875 575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~ 654 (734)
++........+........+|+++|..+.++++-. ..+.|...++........+... .....+.+....+.++.+-..
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 98765444444445566789999887777777763 3456666666533322222221 233455554445666666666
Q ss_pred CCeEEEEecCCC
Q psy8875 655 LNEISSCDYNGG 666 (734)
Q Consensus 655 ~~~I~~~~~dG~ 666 (734)
.+.|...++...
T Consensus 639 dg~I~iwD~~~~ 650 (793)
T PLN00181 639 DHKVYYYDLRNP 650 (793)
T ss_pred CCeEEEEECCCC
Confidence 778888877543
No 131
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.13 E-value=1.2 Score=47.53 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=74.5
Q ss_pred CccceeeeccCCcEEEEeCCC------CeEEEEeCCCCceEEE-EcC-------------CCCCceeEEEeCCCCeEEEE
Q psy8875 548 IADGLAVDWIYSHIYWTDAHK------NTIELANFEGTMRKVL-VRS-------------YLDEPRSLALNPIDGWMYWS 607 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td~~~------~~I~~~~ldG~~~~~l-~~~-------------~l~~P~~iavD~~~g~LYwt 607 (734)
.++||++ ...+.+||++... .+|.+++++|...+.+ +.. .-....+||+.|....||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 6789999 5889999999999 9999999999886554 221 12345699999987768777
Q ss_pred ecCC-------C-------ceEEEeccC--CC-ceEEEEE-c------CCCCceeEEEecCCCeEEEEeCC-------CC
Q psy8875 608 DWGQ-------N-------AKIERAGMD--GS-HRNMVIV-S------DIKWPNGLTLDLVQRRLYWVDAK-------LN 656 (734)
Q Consensus 608 d~~~-------~-------~~I~~~~ld--G~-~~~~lv~-~------~l~~P~glavD~~~~~LYw~D~~-------~~ 656 (734)
-.+. . .+|.+.+.. |. ..+..+. . ....+..|+.- .+++|++.+.. ..
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceE
Confidence 5321 1 356666654 21 1222222 1 12334444442 46778888754 34
Q ss_pred eEEEEecCCC
Q psy8875 657 EISSCDYNGG 666 (734)
Q Consensus 657 ~I~~~~~dG~ 666 (734)
+|+.+++.+.
T Consensus 244 ri~~v~l~~a 253 (326)
T PF13449_consen 244 RIYRVDLSDA 253 (326)
T ss_pred EEEEEEcccc
Confidence 7888887643
No 132
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.54 Score=52.03 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=84.2
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
.+|++.+++...+.+++... ..-...++-|...+|.++-.. ....|+.++++++....|... ...-..=++.+.+.+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCE
Confidence 46999999888777777422 222344555656666666533 357899999999886554322 111113345567888
Q ss_pred EEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCc--eEEEeccCCCceEEEecc
Q psy8875 648 LYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKA--IYKANKFTGDNLTAITGV 718 (734)
Q Consensus 648 LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~--v~~~~~~~G~~~~~l~~~ 718 (734)
||++-. +.-.|++++++|+..+.+......-..| .+.-++++|-+.....+. |...+..+|...+++...
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p-~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNP-VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST 369 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCc-cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc
Confidence 888753 3448999999999876665432222222 233345555555432222 444444445445555433
No 133
>KOG0318|consensus
Probab=96.02 E-value=2.5 Score=46.27 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=108.2
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
..+.+.+|++.+...+||-. ...+.|..-+...|....+.-...-..+.+|+.. ..+.||-.-+ ..++.+.++.+..
T Consensus 319 HnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~t~g~-Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSG-SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELFTIGW-DDTLRVISLKDNG 395 (603)
T ss_pred cccceeEEEEcCCCCEEEee-ccCceEEEEecCCccccccccccccceEEEEeec-CCCcEEEEec-CCeEEEEecccCc
Confidence 46778899998877666644 4578888877765544333222233456778776 4456655444 5778888774332
Q ss_pred eE-EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 581 RK-VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 581 ~~-~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
.. ..+..-..+|.+||+.+..+.+..+-.. .|.... +.+.. ....-...|.++|+.+....+ .+-...++|.
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~---~iv~l~-~~~~~--~~~~~~y~~s~vAv~~~~~~v-aVGG~Dgkvh 468 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACIS---DIVLLQ-DQTKV--SSIPIGYESSAVAVSPDGSEV-AVGGQDGKVH 468 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecC---cEEEEe-cCCcc--eeeccccccceEEEcCCCCEE-EEecccceEE
Confidence 21 1112345689999999876677776532 232222 11111 111234568899997555443 3334456688
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~ 705 (734)
.+.+.|..+............+..|++. +.+|-.+|.. ++|...+
T Consensus 469 vysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-rkvv~yd 515 (603)
T KOG0318|consen 469 VYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-RKVVLYD 515 (603)
T ss_pred EEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-CcEEEEE
Confidence 8888886644332222334445666663 3444445554 3343333
No 134
>KOG3509|consensus
Probab=95.94 E-value=0.054 Score=64.11 Aligned_cols=96 Identities=31% Similarity=0.707 Sum_probs=85.3
Q ss_pred ceecCcCCCCCCCCCCCCCCCCCCC---CCCCCCceecCCCCeecCCcccCCCCCCCCCCCCCCCCC----CCCCCCcee
Q psy8875 238 MCIPSTWVCDGQNDCPDGVDEKKCH---ETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQP----VKCTAGQFT 310 (734)
Q Consensus 238 ~Ci~~~~~Cdg~~dC~dg~de~~C~---~~C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C~~----~~C~~~~~~ 310 (734)
+|......|++..|+.+-+|+.++. ..+.++.+.|.++++....|.||....+.++++..+|.. ..|.+..+.
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 81 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQ 81 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCcccc
Confidence 5667788999999999999999886 578899999999999999999999999999998888762 467888899
Q ss_pred cCCCCccccccccccCCCCCCCC
Q psy8875 311 CQNLTACIPDKWVCDGDTVEKDS 333 (734)
Q Consensus 311 C~~~~~Ci~~~~~Cdg~~dC~d~ 333 (734)
|.+.-++...+..|+|.++|.++
T Consensus 82 c~~~~~~~~~~~~~~g~~~~~~~ 104 (964)
T KOG3509|consen 82 CRDRLRCNPQSFQCDGTNDCKDG 104 (964)
T ss_pred cccchhcCCccccccCCCCCCcc
Confidence 99867899999999999999988
No 135
>KOG0285|consensus
Probab=95.91 E-value=0.39 Score=49.91 Aligned_cols=157 Identities=9% Similarity=0.026 Sum_probs=92.0
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
.+.-+..||+||. +.-|.+....+.|...++..|.... .+.+-+...+++||....-.||-+-. .+.|.-.+|.-..
T Consensus 150 HlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lkl-tltGhi~~vr~vavS~rHpYlFs~ge-dk~VKCwDLe~nk 226 (460)
T KOG0285|consen 150 HLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKL-TLTGHIETVRGVAVSKRHPYLFSAGE-DKQVKCWDLEYNK 226 (460)
T ss_pred ccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEE-eecchhheeeeeeecccCceEEEecC-CCeeEEEechhhh
Confidence 4556788999985 5666677778888888988654433 33446778999999866666665433 4667667775433
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
...-..+.+.....|++.|.-..|+-.. ....|.+-+|-......++...-.....+..-+.+..||- -+....|..
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit-~S~D~tvrl 303 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT-GSHDSTVRL 303 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE-ecCCceEEE
Confidence 2222346788889999999766665443 2344544455433332222222222233444444555543 233445555
Q ss_pred Eec
Q psy8875 661 CDY 663 (734)
Q Consensus 661 ~~~ 663 (734)
-++
T Consensus 304 WDl 306 (460)
T KOG0285|consen 304 WDL 306 (460)
T ss_pred eee
Confidence 554
No 136
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.85 E-value=1.6 Score=45.34 Aligned_cols=162 Identities=17% Similarity=0.073 Sum_probs=89.5
Q ss_pred CCCCCccceeeeccCCcEEEEeCCCCeEEEE----e------CCCCceEEEE-----cCCCCCceeEEEeCCCCeEEEEe
Q psy8875 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELA----N------FEGTMRKVLV-----RSYLDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 544 ~~~~~p~glAvD~~~~~lY~td~~~~~I~~~----~------ldG~~~~~l~-----~~~l~~P~~iavD~~~g~LYwtd 608 (734)
..+..|=||++. .+.||.+.. .+|++. + ..+..-+..+ .++.-..-.||+ ..+.+++.+
T Consensus 46 r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~fVN 119 (335)
T TIGR03032 46 RTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL--GAGRLLFVN 119 (335)
T ss_pred eccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee--cCCcEEEEE
Confidence 356778888886 577888765 345444 1 1122111111 122234556777 355666665
Q ss_pred cCCCceEEEeccCCCceE----EEEE----cCCCCceeEEEecCCCeEEEEeCC-C--CeEEEEe-cCCC------ceEE
Q psy8875 609 WGQNAKIERAGMDGSHRN----MVIV----SDIKWPNGLTLDLVQRRLYWVDAK-L--NEISSCD-YNGG------NRRL 670 (734)
Q Consensus 609 ~~~~~~I~~~~ldG~~~~----~lv~----~~l~~P~glavD~~~~~LYw~D~~-~--~~I~~~~-~dG~------~~~~ 670 (734)
.. -+-|-..+.+.+-.. .+++ ++-=+-||||++ .++--|++--. + ..=+|-+ .+|. ..++
T Consensus 120 T~-fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev 197 (335)
T TIGR03032 120 TL-FSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV 197 (335)
T ss_pred Cc-ceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCE
Confidence 32 244444444433221 1232 222356899996 44455555311 1 1122222 1222 2234
Q ss_pred EEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 671 VLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 671 i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
++. .+..|.+.-+++++||+.|+++++|.++++.+|+...+..
T Consensus 198 l~~---GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~ 240 (335)
T TIGR03032 198 VAS---GLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF 240 (335)
T ss_pred EEc---CccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE
Confidence 443 3677888889999999999999999999988888766643
No 137
>KOG0266|consensus
Probab=95.83 E-value=4.1 Score=45.85 Aligned_cols=158 Identities=11% Similarity=0.118 Sum_probs=95.6
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEec-CCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPI-DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l-~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+..++|.+.. .+.++-....+|+..++ ..+....++. .-...+..+++.+.+ +++.+-...+.|.+.++.+..
T Consensus 203 ~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 203 TRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe
Confidence 4456778887644 44455555666766666 3233333433 345567899999887 888888888999999998755
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE--EEEEcCCCC-c-eeEEEecCCCeEEEEeCCCC
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN--MVIVSDIKW-P-NGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~--~lv~~~l~~-P-~glavD~~~~~LYw~D~~~~ 656 (734)
....+........++++.+. +.++++. ...+.|...++...... ..+...... | .-+.+.+ ++...|+-...+
T Consensus 280 ~~~~l~~hs~~is~~~f~~d-~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPD-GNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDR 356 (456)
T ss_pred EEEeeeccCCceEEEEECCC-CCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCC
Confidence 54455455667788999875 4555554 23567777777665522 122222111 2 4555553 444444545555
Q ss_pred eEEEEecCC
Q psy8875 657 EISSCDYNG 665 (734)
Q Consensus 657 ~I~~~~~dG 665 (734)
.|...++..
T Consensus 357 ~~~~w~l~~ 365 (456)
T KOG0266|consen 357 TLKLWDLRS 365 (456)
T ss_pred eEEEEEccC
Confidence 666666663
No 138
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=95.82 E-value=1.5 Score=43.65 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCCCCccceeee--ccCCcEEEEeC-CCCeEEEEeC----CCCceEEEEc--CCCCCceeEEEeCCCCeEEEEecCCCce
Q psy8875 544 EDKTIADGLAVD--WIYSHIYWTDA-HKNTIELANF----EGTMRKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQNAK 614 (734)
Q Consensus 544 ~~~~~p~glAvD--~~~~~lY~td~-~~~~I~~~~l----dG~~~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~~~~ 614 (734)
.++..|.||++. ++++..|+--. ..+.|....+ +|..+..++. .--.+-.|+++|-..|.||+++. .-.
T Consensus 150 s~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE--dva 227 (364)
T COG4247 150 SSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE--DVA 227 (364)
T ss_pred cCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec--cce
Confidence 467788899984 44455554322 2466666554 3333333332 11235679999999999999983 468
Q ss_pred EEEeccC---CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 615 IERAGMD---GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 615 I~~~~ld---G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
||+...+ |..++++ . .+.--..|+-|..+=.||+..-+.+
T Consensus 228 iWK~~Aep~~G~~g~~i-d-r~~d~~~LtdDvEGltiYy~pnGkG 270 (364)
T COG4247 228 IWKYEAEPNRGNTGRLI-D-RIKDLSYLTDDVEGLTIYYGPNGKG 270 (364)
T ss_pred eeecccCCCCCCccchh-h-hhcCchhhcccccccEEEEcCCCcE
Confidence 8887664 3333332 2 2221123444544445555544333
No 139
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.81 E-value=0.0061 Score=61.53 Aligned_cols=41 Identities=37% Similarity=0.810 Sum_probs=34.8
Q ss_pred Cc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCc
Q psy8875 386 KC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHT 426 (734)
Q Consensus 386 ~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~ 426 (734)
.| ++++|...+..|.+.|.+++++|.|.|++||.|..++++
T Consensus 183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224 (224)
T ss_pred cCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence 46 677888777789999999999999999999999877653
No 140
>KOG0994|consensus
Probab=95.76 E-value=0.076 Score=62.30 Aligned_cols=64 Identities=25% Similarity=0.525 Sum_probs=30.3
Q ss_pred Cccc-cCCCCCccCCCccccccCCCCCCCCCCce--eeCCCceecC----cCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy8875 200 KISC-ACPEGLKLLPDLLMCAEAGSKPCRNSTMF--RCTGGMCIPS----TWVCDGQNDCPDGVDEKKCHETCRSDE 269 (734)
Q Consensus 200 ~~~C-~C~~G~~~~~~~~~~~~~~~~~C~~~~~~--~C~~g~Ci~~----~~~Cdg~~dC~dg~de~~C~~~C~~~~ 269 (734)
.+.| .|.+||.|.|-.-.-..|.+-+|+ ++.- +=.-..|-.. .-+|. |..|+.+..|+ .|.++.
T Consensus 884 G~~CdrCl~GyyGdP~lg~g~~CrPCpCP-~gp~Sg~~~A~sC~~d~~t~~ivC~----C~~GY~G~RCe-~CA~~~ 954 (1758)
T KOG0994|consen 884 GHSCDRCLDGYYGDPRLGSGIGCRPCPCP-DGPASGRQHADSCYLDTRTQQIVCH----CQEGYSGSRCE-ICADNH 954 (1758)
T ss_pred ccchhhhhccccCCcccCCCCCCCCCCCC-CCCccchhccccccccccccceeee----cccCccccchh-hhcccc
Confidence 3444 577888777654322223333443 1110 0000124322 33565 88888888775 344443
No 141
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.74 E-value=1.9 Score=45.49 Aligned_cols=174 Identities=11% Similarity=0.112 Sum_probs=89.6
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc------ceeee
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD------GLAVD 555 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~------glAvD 555 (734)
...|-.+++....+..-++...- . +.| |..+.-|.+-=..+++..+.|+.....+.... .+..|. .-++.
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC-~-~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGC-W-LIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSE-E-EEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEE
T ss_pred CCeEEEEECCCCceeeeecCCCE-E-EEE-ecCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceE
Confidence 45566666665554333221111 1 111 22223355556788899888884444332222 122221 12233
Q ss_pred ccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC---------CCCc---eeEEEeCCCCeEEEEecCC--------CceE
Q psy8875 556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY---------LDEP---RSLALNPIDGWMYWSDWGQ--------NAKI 615 (734)
Q Consensus 556 ~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~---------l~~P---~~iavD~~~g~LYwtd~~~--------~~~I 615 (734)
..++++||+.. .+.|+.+++.|...+....-. .-.| .-+|+++..++||+..... ...|
T Consensus 193 ~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 193 RDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp TTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred CCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 35678888765 699999999988755543211 1122 3589999999999986310 1256
Q ss_pred EEeccCCCceEEEEEcCCCCc-eeEEEecCCC-eEEEEeCCCCeEEEEe
Q psy8875 616 ERAGMDGSHRNMVIVSDIKWP-NGLTLDLVQR-RLYWVDAKLNEISSCD 662 (734)
Q Consensus 616 ~~~~ldG~~~~~lv~~~l~~P-~glavD~~~~-~LYw~D~~~~~I~~~~ 662 (734)
|..++.-..|..-+ .+..| .+|+|..... +||-++...+.|..++
T Consensus 272 Wv~D~~t~krv~Ri--~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 272 WVYDLKTHKRVARI--PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEETTTTEEEEEE--EEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEE--eCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 66666544332222 12222 2555543333 4555555555566555
No 142
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.72 E-value=2.3 Score=49.26 Aligned_cols=187 Identities=9% Similarity=0.031 Sum_probs=100.1
Q ss_pred ceEEEeeeccCCeEEEEEe-------CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC---------
Q psy8875 504 SATAIDFVFRTGMIFWSDI-------SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH--------- 567 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~-------~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~--------- 567 (734)
.+...++.+..+++.++.. ....|+.+... +..+.+..... ...-..++.++.|+++..+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~---~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHS---LTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCC---CCCceECCCCCceEEEecCcceEEEecc
Confidence 4556666766777666542 23467777754 33333322211 3334555555656555322
Q ss_pred --CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE---eccCCCceEE----EEEcCCCC-ce
Q psy8875 568 --KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER---AGMDGSHRNM----VIVSDIKW-PN 637 (734)
Q Consensus 568 --~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~---~~ldG~~~~~----lv~~~l~~-P~ 637 (734)
.+.|++..+++...+. ..-..+..+.+.|...+|.++-. ++|+. ...++..+++ .+...+.. +.
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2344444444432221 11235788999888888877762 45665 3333333322 02223332 45
Q ss_pred eEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEEECCEEEEEeCCCCceEEEe
Q psy8875 638 GLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHP-FSISTFEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 638 glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~~~~lywtd~~~~~v~~~~ 705 (734)
.|++- .++.|++... ....|+.+.+||...+.+.. ..+..| .+|+-..+.||++|.. .++...
T Consensus 501 ~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~--~n~~~~v~~vaa~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 501 SLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPS--RNLSAPVVAVAASPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred cceEe-cCCEEEEEecCCCCceEEEecCCccccccCC--CCccCceEEEecCCceEEEEcCC--ceEEec
Confidence 56653 3555766543 33569999999998775432 223333 4555566789999876 355553
No 143
>PTZ00421 coronin; Provisional
Probab=95.52 E-value=5.8 Score=44.97 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=110.9
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+..|+|++..+.++++-...+.|...++..+.... .+......+..|++.+ .+.++++-...+.|.+.++....
T Consensus 124 H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-VIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-EEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCc
Confidence 345677899998766677776677888888887543322 2322334567788775 45666777778899999886433
Q ss_pred e-EEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCc-eEEEEEcCC-CCceeEEEecCCCeEEEEeCCC
Q psy8875 581 R-KVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSH-RNMVIVSDI-KWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 581 ~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~-~~~lv~~~l-~~P~glavD~~~~~LYw~D~~~ 655 (734)
. ..+..........+...+..+.|+-+... ..+.|...++.... ...++.... ....-..+|+....||.+-.+.
T Consensus 202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 2 22221111122334445545555543321 12455555553221 111111111 1112234676677788776567
Q ss_pred CeEEEEecCCCceEEEEcCCCCCCCC-eEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 656 NEISSCDYNGGNRRLVLYSPQTLSHP-FSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+.|...++........... ....| .|+++.-.+. .|.....|.|+-+.+.+.++.|
T Consensus 282 g~Iriwdl~~~~~~~~~~~--~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~~i~pi 338 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSY--SSVEPHKGLCMMPKWS--LDTRKCEIARFYALTYHSLYTI 338 (493)
T ss_pred CeEEEEEeeCCceEEEeec--cCCCCCcceEeccccc--ccccceeeeEEEEecCCeEEEE
Confidence 7888888765443322211 11222 3555543322 4455556666666665555544
No 144
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.39 E-value=5.2 Score=43.59 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
+++||.+.. .+.|..+++......-... ...+..+++.+++||+.+. .+.|+.+++.+|+.+.
T Consensus 241 ~~~vy~~~~-~g~l~a~d~~tG~~~W~~~----~~~~~~p~~~~~~vyv~~~-~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 241 GGQVYAVSY-QGRVAALDLRSGRVLWKRD----ASSYQGPAVDDNRLYVTDA-DGVVVALDRRSGSELW 303 (377)
T ss_pred CCEEEEEEc-CCEEEEEECCCCcEEEeec----cCCccCceEeCCEEEEECC-CCeEEEEECCCCcEEE
Confidence 678998775 4678888875332221111 2234455678999999874 4789999988887553
No 145
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.38 E-value=0.013 Score=59.19 Aligned_cols=43 Identities=28% Similarity=0.742 Sum_probs=37.1
Q ss_pred CCCccccccCcCC-CCCcccceeccCCceEEecCCCeeeCCCCC
Q psy8875 423 NRHTCIDIDECET-PGSCSQICLNEKGGFKCECVAGYIKDPHHP 465 (734)
Q Consensus 423 ~~~~C~~~~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~ 465 (734)
.++.|.+++||.. +..|.|.|.++.|+|.|.|++||.+..+.+
T Consensus 180 ~~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 5788999999974 467999999999999999999999876643
No 146
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.35 E-value=0.017 Score=40.20 Aligned_cols=31 Identities=45% Similarity=1.181 Sum_probs=25.4
Q ss_pred cccCcCCCCCccc--ceeccCCceEEecCCCee
Q psy8875 429 DIDECETPGSCSQ--ICLNEKGGFKCECVAGYI 459 (734)
Q Consensus 429 ~~~eC~~~~~C~~--~C~n~~g~~~C~C~~gy~ 459 (734)
+++||....+|.+ +|+++.++|.|.|++||.
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 3677765356765 899999999999999998
No 147
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.30 E-value=1.4 Score=50.37 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=84.3
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc---------eEEEEc--CCCCCceeEEEeCCCCeEEEEecCCCce
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM---------RKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQNAK 614 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~---------~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~~~~ 614 (734)
...|.||++.+.++.||.+......|.+.++.... +.+++. .....|...++|.. |+.|.|-.-. +.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~d-sq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLD-SQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeec-ce
Confidence 46899999999999999999999999998875422 223332 23568999999975 6788886432 56
Q ss_pred EEEeccC-------CCceEEEEEc--------CCCCceeEEEecCCCeEEEEeCC------------CCeEEEEecCCCc
Q psy8875 615 IERAGMD-------GSHRNMVIVS--------DIKWPNGLTLDLVQRRLYWVDAK------------LNEISSCDYNGGN 667 (734)
Q Consensus 615 I~~~~ld-------G~~~~~lv~~--------~l~~P~glavD~~~~~LYw~D~~------------~~~I~~~~~dG~~ 667 (734)
|.+.+++ |.....++.. .+..+.|=+.++.++.|+...-. -..-+.+++.|..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdk 477 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDK 477 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCe
Confidence 6666654 3332233321 12334455557667777655311 1133566777887
Q ss_pred eEEEEcCCCCCCCCe
Q psy8875 668 RRLVLYSPQTLSHPF 682 (734)
Q Consensus 668 ~~~i~~~~~~~~~P~ 682 (734)
.+.|...+ .+..|.
T Consensus 478 M~lv~d~p-~~~EPH 491 (635)
T PRK02888 478 MKLVHDGP-TFAEPH 491 (635)
T ss_pred eEEEecCC-CCCCCc
Confidence 77776543 345553
No 148
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.23 E-value=2.3 Score=42.69 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=78.1
Q ss_pred cCCcEEEEeCCCCeEEEEeC-CCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEec-cCCCceEEEEEcC-
Q psy8875 557 IYSHIYWTDAHKNTIELANF-EGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAG-MDGSHRNMVIVSD- 632 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~l-dG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~-ldG~~~~~lv~~~- 632 (734)
..++||+++ ..+.|+..+. +|+..-..- ...+..+ .++ ..+.||+... .++|+..+ .+|.....+....
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~--~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTS--DGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEET--TSEEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccc--eeeeEecccCCcceeeeeccccc
Confidence 367777774 4577888876 554332222 1122222 233 3678888873 34788888 5666555432211
Q ss_pred ----CCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCC--------eEEEEECCEEEEEeCCCC
Q psy8875 633 ----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHP--------FSISTFEDWLYWSDWQQK 699 (734)
Q Consensus 633 ----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P--------~gl~v~~~~lywtd~~~~ 699 (734)
+..+..++++ +++||+... .+.|..+++. |..+-...........+ ..+.+.++.||++.....
T Consensus 108 ~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 108 PPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp CTCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred cccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 2223344443 778887775 5678888855 43322222111111111 233445689999887644
Q ss_pred ceEEEeccCCCce
Q psy8875 700 AIYKANKFTGDNL 712 (734)
Q Consensus 700 ~v~~~~~~~G~~~ 712 (734)
++.++..+|+.+
T Consensus 185 -~~~~d~~tg~~~ 196 (238)
T PF13360_consen 185 -VVAVDLATGEKL 196 (238)
T ss_dssp -EEEEETTTTEEE
T ss_pred -EEEEECCCCCEE
Confidence 677788888744
No 149
>KOG2397|consensus
Probab=95.21 E-value=0.018 Score=62.00 Aligned_cols=69 Identities=36% Similarity=0.664 Sum_probs=58.5
Q ss_pred CceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCC----CceEeCccccCCCCCCCCCCCCCC
Q psy8875 97 EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGN----NRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 97 ~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~----g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|.|.++ ..=|+...+-|...||.||+||.. ...|+...|.|.| ..=|+.+.+=||..||-|||||..
T Consensus 43 ~~~~CLdg-s~~i~f~qlNDd~CDC~DGsDEPG--tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 43 SMFKCLDG-SKTISFSQLNDDSCDCLDGSDEPG--TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL 115 (480)
T ss_pred cceeeccC-CcccCHHHhccccccCCCCCCCCc--cccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence 35888887 367888889999999999999953 3468889999987 367899999999999999999976
No 150
>KOG0315|consensus
Probab=95.18 E-value=3.8 Score=40.86 Aligned_cols=233 Identities=10% Similarity=0.038 Sum_probs=125.8
Q ss_pred eeeeeeccceEEeecCCCceEEEe---cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIV---NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL 552 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~---~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl 552 (734)
+|..+....||..++...+...+. ...+++.+|.|......+| +....+.+..-++..-.-+. .+. -...+..|
T Consensus 54 ~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR-~~~-~~spVn~v 130 (311)
T KOG0315|consen 54 DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQR-NYQ-HNSPVNTV 130 (311)
T ss_pred hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccch-hcc-CCCCcceE
Confidence 344455567788887765543332 2347888888886555555 54556666666655311111 122 12445678
Q ss_pred eeeccCCcEEEEeCCCCeEEEEeCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEE
Q psy8875 553 AVDWIYSHIYWTDAHKNTIELANFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIV 630 (734)
Q Consensus 553 AvD~~~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~ 630 (734)
.+.+....|+..|. ++.|.+.++.... ...++.+.....+.|+|+|...+|--+. ..+..++-+|-+ .....++.
T Consensus 131 vlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 131 VLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred EecCCcceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccCCCccccceE
Confidence 88988889998887 5889999986653 3445556667789999998655444443 235555544432 22222211
Q ss_pred -cCC--CCceeEE--EecCCCeEEEEeCCCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEE
Q psy8875 631 -SDI--KWPNGLT--LDLVQRRLYWVDAKLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYK 703 (734)
Q Consensus 631 -~~l--~~P~gla--vD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~ 703 (734)
.++ +.-.+|. +.+..+ ...+-+..+.+...+.++- ..+..+... -.+-.+-++.. +...+|-...+.+.-
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred hhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceee
Confidence 122 2223333 443333 3334444556666666665 333344332 24555666643 333334333344444
Q ss_pred EeccCCCceEEEec
Q psy8875 704 ANKFTGDNLTAITG 717 (734)
Q Consensus 704 ~~~~~G~~~~~l~~ 717 (734)
-+..+|+.+.....
T Consensus 285 W~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 285 WDLSAGKEVRQYQG 298 (311)
T ss_pred cccccCceeeecCC
Confidence 45556666555543
No 151
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.15 E-value=3.5 Score=45.33 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCC-C
Q psy8875 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTL-S 679 (734)
Q Consensus 601 ~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~-~ 679 (734)
.+.||++.. .+.++..++.... ++....+..+..+++ .+++||+.+. .++|..++...... +-...... .
T Consensus 256 ~~~vy~~~~--~g~l~ald~~tG~--~~W~~~~~~~~~~~~--~~~~vy~~~~-~g~l~ald~~tG~~--~W~~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALAY--NGNLVALDLRSGQ--IVWKREYGSVNDFAV--DGGRIYLVDQ-NDRVYALDTRGGVE--LWSQSDLLHR 326 (394)
T ss_pred CCEEEEEEc--CCeEEEEECCCCC--EEEeecCCCccCcEE--ECCEEEEEcC-CCeEEEEECCCCcE--EEcccccCCC
Confidence 578888764 3567776664222 222233334445555 4889999874 47888888754332 21111100 1
Q ss_pred CCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 680 ~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
...+.++.+++||+.+.. +.|+.++..+|+.+...
T Consensus 327 ~~~sp~v~~g~l~v~~~~-G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 327 LLTAPVLYNGYLVVGDSE-GYLHWINREDGRFVAQQ 361 (394)
T ss_pred cccCCEEECCEEEEEeCC-CEEEEEECCCCCEEEEE
Confidence 112345678999998764 67888998899876554
No 152
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.02 E-value=4.2 Score=44.97 Aligned_cols=221 Identities=12% Similarity=0.170 Sum_probs=114.4
Q ss_pred ceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCC----------CcEEEEecCCCCce-EEEEeCCCCCcc-
Q psy8875 484 DIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISE----------KKIYKAPIDEGSER-TVVIEEDKTIAD- 550 (734)
Q Consensus 484 ~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~----------~~I~~~~l~~g~~~-~~~~~~~~~~p~- 550 (734)
.|+.+++....... .+... ....+.|......+|++.... ..|++..+..+... .+++. ....+.
T Consensus 151 ~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe-~~~~~~~ 228 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE-EPDEPFW 228 (414)
T ss_dssp EEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTS
T ss_pred EEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe-ecCCCcE
Confidence 36666675543211 11111 222388887777888887543 34788777644333 34443 333343
Q ss_pred --ceeeeccCCcEEEEeCC--C-CeEEEEeCCCC-----ceEEEEcCCCCCceeEEEeCCCCeEEE-EecC-CCceEEEe
Q psy8875 551 --GLAVDWIYSHIYWTDAH--K-NTIELANFEGT-----MRKVLVRSYLDEPRSLALNPIDGWMYW-SDWG-QNAKIERA 618 (734)
Q Consensus 551 --glAvD~~~~~lY~td~~--~-~~I~~~~ldG~-----~~~~l~~~~l~~P~~iavD~~~g~LYw-td~~-~~~~I~~~ 618 (734)
++.+...++.|++.-.. . ..|+.++++.. ..+.|.. ....-.. .++..++.+|+ |+.+ ...+|.++
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~-~v~~~~~~~yi~Tn~~a~~~~l~~~ 306 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDGVEY-YVDHHGDRLYILTNDDAPNGRLVAV 306 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-EE-EEEEETTEEEEEE-TT-TT-EEEEE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCceEE-EEEccCCEEEEeeCCCCCCcEEEEe
Confidence 56666666777765433 3 46888888763 3333332 2222222 23334676665 4433 34799999
Q ss_pred ccCCCc---eE-EEEEcCC-CCceeEEEecCCCeEEEEeC--CCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEE--EC
Q psy8875 619 GMDGSH---RN-MVIVSDI-KWPNGLTLDLVQRRLYWVDA--KLNEISSCDYN-GGNRRLVLYSPQTLSHPFSIST--FE 688 (734)
Q Consensus 619 ~ldG~~---~~-~lv~~~l-~~P~glavD~~~~~LYw~D~--~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v--~~ 688 (734)
+++... .. +++...- ....++.+ .+++|++... ...+|..++++ +.....+... ....-.++.. ..
T Consensus 307 ~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~~~~~~~~ 382 (414)
T PF02897_consen 307 DLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSGVSGDFDS 382 (414)
T ss_dssp ETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEEEES-TT-
T ss_pred cccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCC--cceEEeccCCCCCC
Confidence 987655 23 4443322 23455555 5888888854 44588999998 5544444321 1111122221 34
Q ss_pred CEEEEEe--C-CCCceEEEeccCCCce
Q psy8875 689 DWLYWSD--W-QQKAIYKANKFTGDNL 712 (734)
Q Consensus 689 ~~lywtd--~-~~~~v~~~~~~~G~~~ 712 (734)
+.|+++- + .-..|++++..+|+..
T Consensus 383 ~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 383 DELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5555543 2 2346888887777643
No 153
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=1.8 Score=42.10 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=87.7
Q ss_pred cceEEeecCCCceEE---EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 483 HDIRKISLDHHEMTA---IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~---l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
..|++.++++..... +.+...-..|+..- .+.+|...+..+.-++++.+. ..++-.-.-...-.||+-| ..
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d--~~ 141 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEGWGLTSD--DK 141 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHH--hhhhcccccCCcceeeecC--Cc
Confidence 457777777443221 11111122334322 667777777777777776652 1111000011233466666 34
Q ss_pred cEEEEeCCCCeEEEEeCCC--CceEEEEcC---CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE----
Q psy8875 560 HIYWTDAHKNTIELANFEG--TMRKVLVRS---YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV---- 630 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG--~~~~~l~~~---~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~---- 630 (734)
+|..+| ++..+...+... ...++.+.. .+..-+- +-+..|.||---|- ..+|.|++.+.......+.
T Consensus 142 ~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE--LE~VdG~lyANVw~-t~~I~rI~p~sGrV~~widlS~L 217 (262)
T COG3823 142 NLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE--LEWVDGELYANVWQ-TTRIARIDPDSGRVVAWIDLSGL 217 (262)
T ss_pred ceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccc--eeeeccEEEEeeee-ecceEEEcCCCCcEEEEEEccCC
Confidence 444444 344454444321 111111111 1111122 23356777766664 3578887776544433322
Q ss_pred --------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 631 --------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 631 --------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
.+...+||||.|+..+|+|++--.-..++-+.+++
T Consensus 218 ~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~ 260 (262)
T COG3823 218 LKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDE 260 (262)
T ss_pred chhcCccccccccccceeecCcCCeEEEecCcCceeEEEEecC
Confidence 22346899999999999999976556666666554
No 154
>KOG0279|consensus
Probab=94.93 E-value=4.9 Score=40.77 Aligned_cols=206 Identities=11% Similarity=0.044 Sum_probs=124.4
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
+.+++.-.....+|++-.....|+..++..... ....+..-.....++++- ..++..++-+..+.++..++.+..
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-cCCceEEeccccceEEEEEecCCc
Confidence 344444444455555555556666555542211 111122223456677776 446677777778899999998866
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeC-CCCeE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDA-KLNEI 658 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~-~~~~I 658 (734)
.+..+.+......++|+++.+ +..++-.. ...|...+.-|.-.-++.... -.|.+-+.+.|.+...|++.. ..+.|
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn-~qivSGSr-DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDN-RQIVSGSR-DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred EEEEEEecCCceEEEEecCCC-ceeecCCC-cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 666666777788999999854 44455433 356666666666555555444 677888888877655665554 45567
Q ss_pred EEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 659 SSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 659 ~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
..-++++-..+.-+.+ .-..-..+++ -.|.|-.+-.+.+.++-.+...|+....+
T Consensus 175 KvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 7778887665544332 2334455666 45666666555666666666666665544
No 155
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.87 E-value=2.3 Score=46.11 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=58.1
Q ss_pred eeEEEe-CCCC-eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC----CCeEEEEecC-C
Q psy8875 593 RSLALN-PIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK----LNEISSCDYN-G 665 (734)
Q Consensus 593 ~~iavD-~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~----~~~I~~~~~d-G 665 (734)
..+.+- +..+ +|++++...-.+|+..+++|...+.|.......-.-+.+|..+++||++-.. ...|++++++ +
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 344442 3344 4555553334699999999987665544443332458889999999999654 5589999999 7
Q ss_pred CceEEEEcCCCCCCCCeEEEEEC
Q psy8875 666 GNRRLVLYSPQTLSHPFSISTFE 688 (734)
Q Consensus 666 ~~~~~i~~~~~~~~~P~gl~v~~ 688 (734)
+..+.|... ...+ +.+++..
T Consensus 318 ~~~~~LT~~--~~~~-~~~~~Sp 337 (353)
T PF00930_consen 318 GEPKCLTCE--DGDH-YSASFSP 337 (353)
T ss_dssp TEEEESSTT--SSTT-EEEEE-T
T ss_pred CCeEeccCC--CCCc-eEEEECC
Confidence 777665432 2223 5566643
No 156
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.85 E-value=1.2 Score=51.12 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=25.9
Q ss_pred EEEECCEEEEEeCCCCceEEEeccCCCceEEEeccc-ccCCCcc
Q psy8875 684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH-QTHEPLN 726 (734)
Q Consensus 684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~-~l~~P~~ 726 (734)
|+..++.+|+ -...+.|+.++..||+.+-...... ....|+.
T Consensus 468 l~t~g~lvf~-g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~t 510 (527)
T TIGR03075 468 LATAGDLVFY-GTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVT 510 (527)
T ss_pred eEECCcEEEE-ECCCCeEEEEECCCCCEeEEEeCCCCceecCEE
Confidence 4445554444 4456789999999998876654322 2334554
No 157
>smart00181 EGF Epidermal growth factor-like domain.
Probab=94.79 E-value=0.025 Score=38.38 Aligned_cols=24 Identities=38% Similarity=1.041 Sum_probs=19.2
Q ss_pred CCCcC-ccccCCCcceeecCCCcEe
Q psy8875 397 GGCLH-KCVDLPVGYMCECNEGYKL 420 (734)
Q Consensus 397 ~~C~~-~C~~~~~~~~C~C~~G~~l 420 (734)
..|.+ .|+++.++|+|.|++||.+
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 35655 7888889999999999865
No 158
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.75 E-value=2.5 Score=45.53 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=72.8
Q ss_pred ccccceeeeee---ccceEEeecCCCceEEEecCC-cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CC
Q psy8875 471 AEGHASLLFAR---KHDIRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-ED 545 (734)
Q Consensus 471 ~~~~~~l~~~~---~~~I~~i~l~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~ 545 (734)
.++..+|+.++ ...++.++|...+.++|.... ....+.-+.+....|||.. ....|++++|.....+ ++.. ..
T Consensus 45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~-~vy~~p~ 122 (386)
T PF14583_consen 45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEER-VVYEVPD 122 (386)
T ss_dssp TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EE-EEEE--T
T ss_pred CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEE-EEEECCc
Confidence 34444555444 456899999999998887643 2222444556678887764 3467899999854433 3322 11
Q ss_pred CCCcccee-eeccCCcEEEE-e-----------C----------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC
Q psy8875 546 KTIADGLA-VDWIYSHIYWT-D-----------A----------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG 602 (734)
Q Consensus 546 ~~~p~glA-vD~~~~~lY~t-d-----------~----------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g 602 (734)
.-...+-. ++. .+.+++. . + -..+|.++++.+...++|+.... +..-+-..|...
T Consensus 123 ~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp 200 (386)
T PF14583_consen 123 DWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDP 200 (386)
T ss_dssp TEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEETTEE
T ss_pred ccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccCCCCC
Confidence 11111222 121 1222221 1 0 02478999998888888875432 222333333322
Q ss_pred -eEEEEe---cCC-CceEEEeccCCCceEEE
Q psy8875 603 -WMYWSD---WGQ-NAKIERAGMDGSHRNMV 628 (734)
Q Consensus 603 -~LYwtd---~~~-~~~I~~~~ldG~~~~~l 628 (734)
.|-+.- |.. ..+||.+++||++.+.+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence 233332 222 24999999999987765
No 159
>KOG4649|consensus
Probab=94.70 E-value=0.91 Score=45.42 Aligned_cols=139 Identities=17% Similarity=0.085 Sum_probs=77.7
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
..-.-+|||+.+|+|||-..-..||+-.. .++ ++. ++|--.+|.||+.+.....+||....-++...
T Consensus 31 Hs~~~~avd~~sG~~~We~ilg~RiE~sa-------~vv-gdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 31 HSGIVIAVDPQSGNLIWEAILGVRIECSA-------IVV-GDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred CCceEEEecCCCCcEEeehhhCceeeeee-------EEE-CCE-----EEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 34456899999999999877677776432 122 222 66666789999999765557777654433211
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC---CCCCCCCeEEEEECCEEEEEeCCCCceEE
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS---PQTLSHPFSISTFEDWLYWSDWQQKAIYK 703 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~---~~~~~~P~gl~v~~~~lywtd~~~~~v~~ 703 (734)
.-.+|+.++.||-. +..+..+.+|+.... -+..+ ......| .|+.-.+.||++-.. ++|.+
T Consensus 98 -----------~a~~d~~~glIycg-shd~~~yalD~~~~~--cVykskcgG~~f~sP-~i~~g~~sly~a~t~-G~vla 161 (354)
T KOG4649|consen 98 -----------RAQCDFDGGLIYCG-SHDGNFYALDPKTYG--CVYKSKCGGGTFVSP-VIAPGDGSLYAAITA-GAVLA 161 (354)
T ss_pred -----------ceEEcCCCceEEEe-cCCCcEEEecccccc--eEEecccCCceeccc-eecCCCceEEEEecc-ceEEE
Confidence 11244444444332 333444444432211 11110 0111223 245556789998765 78888
Q ss_pred EeccCCCceEE
Q psy8875 704 ANKFTGDNLTA 714 (734)
Q Consensus 704 ~~~~~G~~~~~ 714 (734)
+++.++...+.
T Consensus 162 vt~~~~~~~~~ 172 (354)
T KOG4649|consen 162 VTKNPYSSTEF 172 (354)
T ss_pred EccCCCCccee
Confidence 88877754433
No 160
>PTZ00420 coronin; Provisional
Probab=94.44 E-value=12 Score=43.08 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=74.4
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL 573 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~ 573 (734)
....+..|+|++..+.++.+-...+.|+..++..+.. ....+......+..|++.+....|+.+-...+.|.+
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 3456788999886566666666778887777753321 111222233456788888877777777666789999
Q ss_pred EeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 574 ANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 574 ~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
.++........+. ....+..|++++. |.++.+.. ....|...++...
T Consensus 153 WDl~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s-~D~~IrIwD~Rsg 199 (568)
T PTZ00420 153 WDIENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTC-VGKHMHIIDPRKQ 199 (568)
T ss_pred EECCCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEe-cCCEEEEEECCCC
Confidence 9987554333222 2345788999885 44544432 2356666666543
No 161
>KOG4328|consensus
Probab=94.33 E-value=1.5 Score=47.17 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=88.5
Q ss_pred CCcceEEEeeeccCC-eEEEEEeCCCcEEEEecCC--CCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875 501 STKSATAIDFVFRTG-MIFWSDISEKKIYKAPIDE--GSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~-~lyw~d~~~~~I~~~~l~~--g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l 576 (734)
...++.+++|+|... +|..+....+.|...++++ ... ..++.......+.+|.+-+.+-..+++-+..+.|...++
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 456788999999887 6666665677888877741 111 222222222234455555544433333344555665565
Q ss_pred CCCceEEEEcC--CCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 577 EGTMRKVLVRS--YLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 577 dG~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
.+...++++.. ....-.++-+....+.+|+.+ +| .-.++-..++|+....+...+. ...+|++.+....++.+-+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCPWFLATAS 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhhc-ccceeecCCCCchheeecc
Confidence 55544444432 223445566666667666665 44 3455555667774433222222 5678999887777666644
Q ss_pred C--CCeEEEEe
Q psy8875 654 K--LNEISSCD 662 (734)
Q Consensus 654 ~--~~~I~~~~ 662 (734)
. +.+||-++
T Consensus 343 ~D~T~kIWD~R 353 (498)
T KOG4328|consen 343 LDQTAKIWDLR 353 (498)
T ss_pred cCcceeeeehh
Confidence 3 34566555
No 162
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.30 E-value=0.38 Score=51.59 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=68.5
Q ss_pred eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCe
Q psy8875 603 WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPF 682 (734)
Q Consensus 603 ~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~ 682 (734)
.||.++......++.++|+....+.|.........|..+.+....||+... ...|++++++....++|+..+.... ..
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy~~p~~~~-g~ 127 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVYEVPDDWK-GY 127 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEEE--TTEE-EE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEEECCcccc-cc
Confidence 466666555678889889887777666543333446677778888877653 3589999999988877765432211 11
Q ss_pred EEEE--ECCEEEEE------------eCC----------CCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 683 SIST--FEDWLYWS------------DWQ----------QKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 683 gl~v--~~~~lywt------------d~~----------~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
+-.+ .++.+++. +|. ..+|++|+..+|+...++.....|.|++.-|
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 2221 22333322 111 1368999999999888888877788877655
No 163
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.24 E-value=0.047 Score=37.41 Aligned_cols=30 Identities=40% Similarity=0.928 Sum_probs=21.6
Q ss_pred ccccccCCCCC--cCccccCCCcceeecCCCcE
Q psy8875 389 VDECAKDNGGC--LHKCVDLPVGYMCECNEGYK 419 (734)
Q Consensus 389 ~~eC~~~~~~C--~~~C~~~~~~~~C~C~~G~~ 419 (734)
+++|... ..| .+.|.+.+++|.|.|++||.
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred cccCCCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 4556531 234 45799999999999999994
No 164
>KOG0286|consensus
Probab=94.20 E-value=7.5 Score=39.75 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=103.5
Q ss_pred CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
..-.+|-++..+....++....+...+.+......+|+|.|.+++.|++-.- ...+||-+. +|.-++.+. ..-.-.|
T Consensus 156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qtF~-ghesDIN 233 (343)
T KOG0286|consen 156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQTFE-GHESDIN 233 (343)
T ss_pred CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEeec-ccccccc
Confidence 4455677777788888887777777777888899999999999999999632 224555433 333344332 3333345
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.+.+ +.++.-|.+-+..+....+++.......+++....+.-..++++ ..|+|.++-+....+..-+.+.|+.+.+|.
T Consensus 234 sv~f-fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 234 SVRF-FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred eEEE-ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 6666 34556666766677777777765444444443333333356777 578888887777788888888888877776
Q ss_pred c
Q psy8875 717 G 717 (734)
Q Consensus 717 ~ 717 (734)
+
T Consensus 313 G 313 (343)
T KOG0286|consen 313 G 313 (343)
T ss_pred c
Confidence 4
No 165
>KOG0266|consensus
Probab=94.10 E-value=12 Score=41.95 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=108.6
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CC-C
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EG-T 579 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG-~ 579 (734)
..+..++|.+.... .++-...+.|+...+..+.. ....+..-...+..+++-+. +.+.++-+...+|.+.++ +. .
T Consensus 160 ~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred CceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCe
Confidence 34445666654444 44444445555544432221 11111223344567777654 445566666778888777 43 4
Q ss_pred ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
..+++. +......++++.|.. .+..+-.. ...|..-++.+......+...-..-+++++.. .++++++-...+.|.
T Consensus 238 ~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~-D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 238 NLKTLK-GHSTYVTSVAFSPDG-NLLVSGSD-DGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIR 313 (456)
T ss_pred EEEEec-CCCCceEEEEecCCC-CEEEEecC-CCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEE
Confidence 444444 666677999999987 56655432 34555555544333333444444567888874 555555657788999
Q ss_pred EEecCCCceE--EEEcCCCCCCCCeE-EEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 660 SCDYNGGNRR--LVLYSPQTLSHPFS-ISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 660 ~~~~dG~~~~--~i~~~~~~~~~P~g-l~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
..++.+.... ..+....... |.. +.+. ++...|+-...+.|...+...+......
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 9898776632 2332222222 443 3332 3444444444445544444444443333
No 166
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.06 E-value=8.7 Score=42.20 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=41.2
Q ss_pred CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCce
Q psy8875 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
+++||++.. .+.+..+++...... -.. .+..+..+++.+++||+.+.. +.|+.++..+|+.+
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~--W~~--~~~~~~~~~~~~~~vy~~~~~-g~l~ald~~tG~~~ 317 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIV--WKR--EYGSVNDFAVDGGRIYLVDQN-DRVYALDTRGGVEL 317 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEE--Eee--cCCCccCcEEECCEEEEEcCC-CeEEEEECCCCcEE
Confidence 678988774 467888886543322 111 123344567789999998864 67899988888654
No 167
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.03 E-value=0.13 Score=43.00 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=30.5
Q ss_pred EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
+.+.+..||||++++.+++||+++...+.|..+..
T Consensus 49 va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 49 VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 44678999999999999999999999888887654
No 168
>KOG3509|consensus
Probab=94.01 E-value=0.04 Score=65.12 Aligned_cols=101 Identities=34% Similarity=0.762 Sum_probs=88.1
Q ss_pred ceecCcCccCCCCCCCCCCcccccc--cCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC----CCCccccc
Q psy8875 66 MCIPSTWVCDGQNDCPDGVDEKKCQ--KRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK----NRTCQASE 139 (734)
Q Consensus 66 ~Ci~~~~~cdg~~dC~dg~de~~C~--~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~----~~~C~~~~ 139 (734)
.|......|++..|+.+.+|+.++. ...+.+.++.|.+ +++.-..|.||...++.++++...|. ...|.+.+
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 79 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNN--PRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTE 79 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCccccccCCcchhccCC--ccccCchhhhccccccCCCCCcCCccccccccccCCcc
Confidence 4667778899999999999998765 3578899999988 69999999999999999999888774 24788889
Q ss_pred CcCCCC-ceEeCccccCCCCCCCCCCCCCC
Q psy8875 140 FRCGNN-RCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 140 f~C~~g-~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
+.|.+- ++.+.+..|+|.++|.++++|..
T Consensus 80 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (964)
T KOG3509|consen 80 TQCRDRLRCNPQSFQCDGTNDCKDGSDEVG 109 (964)
T ss_pred cccccchhcCCccccccCCCCCCccchhcc
Confidence 999886 89999999999999999999965
No 169
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.92 E-value=9.7 Score=43.24 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=25.8
Q ss_pred EEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 683 SISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 683 gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.+++.++.||+.+. .+.|+.+++.+|+.+....
T Consensus 401 ~~~~~g~~v~~g~~-dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 401 SLATAGNLVFAGAA-DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred ceEecCCeEEEECC-CCeEEEEECCCCceeeEEE
Confidence 35678889999874 5789999999998876654
No 170
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.89 E-value=20 Score=43.51 Aligned_cols=157 Identities=6% Similarity=-0.041 Sum_probs=87.8
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
..+.+++|.+..+.+..+-...+.|...++..+... ..+........+|++.+..+.++++-...+.|.+.++......
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~-~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV-TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE-EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 345677777654555555556777887777643322 2222233446677777667788888888889999998654332
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
..+.. ......+++.+..+.++.+-. ..+.|...++..... ...+.........|.+. .+..+++-+..+.|...
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEE
Confidence 22222 234566666555666666653 346777776643221 11122222223455553 33444454455666666
Q ss_pred ecC
Q psy8875 662 DYN 664 (734)
Q Consensus 662 ~~d 664 (734)
++.
T Consensus 688 d~~ 690 (793)
T PLN00181 688 DLS 690 (793)
T ss_pred eCC
Confidence 654
No 171
>KOG0293|consensus
Probab=93.83 E-value=5 Score=42.77 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=110.9
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.....+..|.|.|...+|.-- .....+..-+.+.|..+...-.+-...+...|--+.+. =+++-+....|...++||.
T Consensus 267 gh~~~V~yi~wSPDdryLlaC-g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn 344 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLAC-GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN 344 (519)
T ss_pred cccCceEEEEECCCCCeEEec-CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc
Confidence 333455667788766554322 22333555555544333222111123445555544433 3667777788999999997
Q ss_pred ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
....--.-.......||+-+...+|+.... ..+|.-.+.....-+-+++.. +.-..+.|. ..+++..+....+.|.
T Consensus 345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~--d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTV--DKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQEIH 420 (519)
T ss_pred hhhcccccccceeEEEEEcCCCcEEEEEec--ccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccCeeE
Confidence 632211112234568888888888888873 356666555433222233322 224577785 6777888887788888
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEE-E---CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSIST-F---EDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v-~---~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
.-++. .++.+..-.+.-..-+-|-- | ++.+..+-...++|+.-++.+|+.+.+|.+
T Consensus 421 LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 421 LWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred Eeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 87776 22222110000111111111 2 223444445556677777777777666653
No 172
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.73 E-value=12 Score=40.62 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=63.2
Q ss_pred CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCC
Q psy8875 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSH 680 (734)
Q Consensus 601 ~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~ 680 (734)
.++||.+.. .+.|+..++.... ++.......+..++++ +++||+.+ ..+.|..++.......--... .....
T Consensus 241 ~~~vy~~~~--~g~l~a~d~~tG~--~~W~~~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~-~~~~~ 312 (377)
T TIGR03300 241 GGQVYAVSY--QGRVAALDLRSGR--VLWKRDASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGSELWKNDE-LKYRQ 312 (377)
T ss_pred CCEEEEEEc--CCEEEEEECCCCc--EEEeeccCCccCceEe--CCEEEEEC-CCCeEEEEECCCCcEEEcccc-ccCCc
Confidence 578898874 3567777764222 2222223334455553 78999886 457899988753322111100 00011
Q ss_pred CeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 681 PFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 681 P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
..+..+.+++||..+.. +.|+.++..+|+.+..+.
T Consensus 313 ~ssp~i~g~~l~~~~~~-G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 313 LTAPAVVGGYLVVGDFE-GYLHWLSREDGSFVARLK 347 (377)
T ss_pred cccCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEE
Confidence 12234578899988754 788899988898876665
No 173
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.62 E-value=14 Score=40.84 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=108.7
Q ss_pred EEeeeccCCeEEEE-EeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccC--CcEEEEeCCC----------Ce
Q psy8875 507 AIDFVFRTGMIFWS-DISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY--SHIYWTDAHK----------NT 570 (734)
Q Consensus 507 ~i~~d~~~~~lyw~-d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~--~~lY~td~~~----------~~ 570 (734)
++.+.+..++|-++ +... ..|+.+++..|....- .+..+.+-.+-|.. ..+|++.... .+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 45666667766665 3322 2477778875532221 22233332244544 4677876542 34
Q ss_pred EEEEeCCCCceE--EEEcCCCCC---ceeEEEeCCCCeEEEEecC-CC-ceEEEeccCCC----ceEEEEEcCCCCceeE
Q psy8875 571 IELANFEGTMRK--VLVRSYLDE---PRSLALNPIDGWMYWSDWG-QN-AKIERAGMDGS----HRNMVIVSDIKWPNGL 639 (734)
Q Consensus 571 I~~~~ldG~~~~--~l~~~~l~~---P~~iavD~~~g~LYwtd~~-~~-~~I~~~~ldG~----~~~~lv~~~l~~P~gl 639 (734)
|++..+...... +|+.. ... -.++.+.....+|++.-.. .. ..|+.++++.. ....++......- .-
T Consensus 204 v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-~~ 281 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV-EY 281 (414)
T ss_dssp EEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EE
T ss_pred EEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce-EE
Confidence 777777655433 44432 223 3478888888888876543 33 57888888764 2223333322211 12
Q ss_pred EEecCCCeEEEEe---CCCCeEEEEecCCCc---eE-EEEcCCCCCCCCeEEEEECCEEEEEeCCC--CceEEEeccCCC
Q psy8875 640 TLDLVQRRLYWVD---AKLNEISSCDYNGGN---RR-LVLYSPQTLSHPFSISTFEDWLYWSDWQQ--KAIYKANKFTGD 710 (734)
Q Consensus 640 avD~~~~~LYw~D---~~~~~I~~~~~dG~~---~~-~i~~~~~~~~~P~gl~v~~~~lywtd~~~--~~v~~~~~~~G~ 710 (734)
.++..++.+|+.. +...+|.+++++... .. +++.. ..-....++.+++++|++....+ .+|..++...+.
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 3445688888753 456799999988665 23 44432 22224567888999999987543 345555544244
Q ss_pred ceEEE
Q psy8875 711 NLTAI 715 (734)
Q Consensus 711 ~~~~l 715 (734)
....+
T Consensus 361 ~~~~~ 365 (414)
T PF02897_consen 361 ESREI 365 (414)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 44433
No 174
>KOG4378|consensus
Probab=93.51 E-value=3.2 Score=45.15 Aligned_cols=186 Identities=8% Similarity=0.003 Sum_probs=101.5
Q ss_pred CCeEEEEEeCCCcEEEE-ecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCC
Q psy8875 514 TGMIFWSDISEKKIYKA-PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDE 591 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~-~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~ 591 (734)
...+|....+.+.++++ ++. .......+......+.++...|...+|--.. ..+-|.+..+....+.+-+ ......
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred hcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEec-cCCcEEEEecccCccccceecCCCCe
Confidence 44577776665544433 332 1111111111223455666665544332222 2455666666554444333 233344
Q ss_pred ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce-E
Q psy8875 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-R 669 (734)
Q Consensus 592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-~ 669 (734)
.+-|-..+..+.|..+. +..+.+...+..|.....-..+. -.--.||.+.+.+..|+++-....+|..++...... .
T Consensus 167 vRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEEeecccccceeeEee-ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 45666677666666665 34567777666665433222121 222479999999999999998888999888653321 2
Q ss_pred EEEcCCCCCCCCe-EEEE-ECCEEEEEeCCCCceEEEecc
Q psy8875 670 LVLYSPQTLSHPF-SIST-FEDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 670 ~i~~~~~~~~~P~-gl~v-~~~~lywtd~~~~~v~~~~~~ 707 (734)
.|+ ..+|+ .|++ ..|++..+-..+++|+..+..
T Consensus 246 ~l~-----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 246 RLT-----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred eee-----ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 222 24565 4666 456666666667777777643
No 175
>PTZ00420 coronin; Provisional
Probab=93.45 E-value=18 Score=41.65 Aligned_cols=199 Identities=11% Similarity=0.012 Sum_probs=103.9
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+..|+|++....++.+-...+.|...++..+..... +. ....+..|++++. +.++.+-...+.|.+.++....
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i~-~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-IN-MPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-Ee-cCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCc
Confidence 3456788999987766766666678888888875443222 22 2245677888765 5555665556789999886543
Q ss_pred eEEEEcCCCCCceeEEE-----eCCCCeEEEEecCCC--ceEEEeccCC--CceEEEEEcCCCCcee--EEEecCCCeEE
Q psy8875 581 RKVLVRSYLDEPRSLAL-----NPIDGWMYWSDWGQN--AKIERAGMDG--SHRNMVIVSDIKWPNG--LTLDLVQRRLY 649 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iav-----D~~~g~LYwtd~~~~--~~I~~~~ldG--~~~~~lv~~~l~~P~g--lavD~~~~~LY 649 (734)
...-+..........++ .+..++|.-+..... ..|...++.. .....+.... .+.. ...|+..+.||
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEE
Confidence 32222121111111222 133344444432211 2344444442 1121111111 1222 24577788999
Q ss_pred EEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEEECCEEEEEeCCCCceEEEeccC
Q psy8875 650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSISTFEDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 650 w~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~~~~lywtd~~~~~v~~~~~~~ 708 (734)
.+-.+.+.|+..++.......+-. -....| .|+++.-.+. .|...-.|.|+-+.+
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~--~~s~~p~~g~~f~Pkr~--~dv~~cEi~R~~kl~ 334 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNE--YKSCSPFRSFGFLPKQI--CDVYKCEIGRVYKNE 334 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecc--cccCCCccceEEccccc--cCchhhhHhHHhhhc
Confidence 988888888888876543333321 112223 3566654433 344445555665554
No 176
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.38 E-value=14 Score=40.02 Aligned_cols=76 Identities=12% Similarity=0.282 Sum_probs=47.6
Q ss_pred cCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC----CCceEEEeccCCCceEEEe
Q psy8875 643 LVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ----QKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 643 ~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~----~~~v~~~~~~~G~~~~~l~ 716 (734)
..++.++|.-.. ...|+.++.+|+..+.|..+.-.+....++.-.++.||++-.. ...|++++..++...+.|+
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT 324 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT 324 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS
T ss_pred CCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc
Confidence 345566665433 4489999999988775544332232344444467899998765 4589999865366666665
Q ss_pred cc
Q psy8875 717 GV 718 (734)
Q Consensus 717 ~~ 718 (734)
..
T Consensus 325 ~~ 326 (353)
T PF00930_consen 325 CE 326 (353)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 177
>KOG1274|consensus
Probab=93.29 E-value=21 Score=42.01 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=92.7
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
.+.+++.. ...|.+-...+.|.++.++.+....++... -...+.++|+ .+|++..+-+..-.|.+.+++......
T Consensus 58 ~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf-tlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 58 LVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTILARF-TLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEK 132 (933)
T ss_pred eeEEEeec---ccceEEeeccceEEEeeCCCCCccceeeee-eccceEEEEe-cCCcEEEeecCceeEEEEeccccchhe
Confidence 44455544 235666667888999999876655555432 2245778888 455555555555677777775554444
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEE--c----C-CCCceeEEEecCCCeEEEEeCCC
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIV--S----D-IKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~--~----~-l~~P~glavD~~~~~LYw~D~~~ 655 (734)
.+.+.-....+|.+||.+.+|-.+.. .+.+...+++ |....++-. . . -..-.-+++.+.++.+-+.-. .
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d 209 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-D 209 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-C
Confidence 44455556679999998888877774 3566666554 222222110 0 0 111234667776666555433 4
Q ss_pred CeEEEEecCCCceEE
Q psy8875 656 NEISSCDYNGGNRRL 670 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~ 670 (734)
+.|..++.+|-....
T Consensus 210 ~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQF 224 (933)
T ss_pred CeEEEEccCCceehe
Confidence 567777766654433
No 178
>KOG2139|consensus
Probab=93.19 E-value=3.6 Score=43.16 Aligned_cols=151 Identities=10% Similarity=0.051 Sum_probs=84.6
Q ss_pred ccCCeEEEEEeCCCcEEEE-ecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC
Q psy8875 512 FRTGMIFWSDISEKKIYKA-PIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL 589 (734)
Q Consensus 512 ~~~~~lyw~d~~~~~I~~~-~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l 589 (734)
-+.+..+|++......-|. .+. ++. .+++...+-..+..|+-...+..|--+..+...|.+.+.+......|...++
T Consensus 160 Cr~gIciW~~s~tln~~r~~~~~-s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 160 CRAGICIWSDSRTLNANRNIRMM-STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred ecceeEEEEcCcccccccccccc-cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 3567888887654322221 111 222 2222222333344555554333333333446678888888776666654555
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEE-EeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIE-RAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~-~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
....-|...|...+||-+......+++ -..+--+.+.++... ...+-..++.+.+|.++-.+..+|++..+++.
T Consensus 239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg---rvqtacWspcGsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG---RVQTACWSPCGSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC---ceeeeeecCCCCEEEEEEcCCceEEEEeecCC
Confidence 555556667766666666543333444 233333344444333 33455678889999999999999999988765
No 179
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=93.19 E-value=0.089 Score=35.99 Aligned_cols=31 Identities=39% Similarity=1.067 Sum_probs=24.3
Q ss_pred ccCcCCCCCc--ccceeccCCceEEecCCCeee
Q psy8875 430 IDECETPGSC--SQICLNEKGGFKCECVAGYIK 460 (734)
Q Consensus 430 ~~eC~~~~~C--~~~C~n~~g~~~C~C~~gy~~ 460 (734)
+++|....+| .+.|.+..++|.|.|++||.+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 4566543456 458999999999999999986
No 180
>KOG4441|consensus
Probab=93.17 E-value=8.2 Score=44.65 Aligned_cols=181 Identities=9% Similarity=0.116 Sum_probs=107.7
Q ss_pred eEEEeeeccCCeEEEEEeCC------CcEEEEecCCCCceEEEEeCCCCCc-cceeeeccCCcEEEEeCC-----CCeEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISE------KKIYKAPIDEGSERTVVIEEDKTIA-DGLAVDWIYSHIYWTDAH-----KNTIE 572 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~------~~I~~~~l~~g~~~~~~~~~~~~~p-~glAvD~~~~~lY~td~~-----~~~I~ 572 (734)
..++++. ++.||++-..+ ..+.++++.... -..+. .+..+ .++++-...+.||..-.. ...|+
T Consensus 325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a-~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVA-PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc--eeccC-CccCccccceeEEECCEEEEEeccccccccccEE
Confidence 3455555 78999986544 356777776333 22223 33333 356666678999998654 34688
Q ss_pred EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCc---eeEEEecC
Q psy8875 573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWP---NGLTLDLV 644 (734)
Q Consensus 573 ~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P---~glavD~~ 644 (734)
+.+.....-..+..-. ..-.+.++-..+|+||.+--. ...++++.+.....-+.+ ..+..+ .|+++ .
T Consensus 400 ~YDp~~~~W~~va~m~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~~~R~~~g~a~--~ 474 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPML-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMNTRRSGFGVAV--L 474 (571)
T ss_pred EecCCCCcccccCCCC-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCcccccccceEEE--E
Confidence 8887766555443211 122344444578999999631 124677777655433322 122222 34444 6
Q ss_pred CCeEEEEeC-----CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875 645 QRRLYWVDA-----KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 645 ~~~LYw~D~-----~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~ 696 (734)
+++||++-. ...+|+++++....-..+.. ........|+++.++.||+.-.
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEccc-CccccccccEEEECCEEEEEec
Confidence 999999843 23468888887766665532 2223445678999999999853
No 181
>KOG2106|consensus
Probab=93.16 E-value=16 Score=40.17 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=95.8
Q ss_pred EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEe
Q psy8875 540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERA 618 (734)
Q Consensus 540 ~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~ 618 (734)
+.++.....|+.||=. .+-||+-.. .+.|..-++......++. .....--|+|+.|.. .+|.|-.. ..-+||+
T Consensus 323 ~elPe~~G~iRtv~e~--~~di~vGTt-rN~iL~Gt~~~~f~~~v~-gh~delwgla~hps~-~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEG--KGDILVGTT-RNFILQGTLENGFTLTVQ-GHGDELWGLATHPSK-NQLLTCGQDKHVRLWN- 396 (626)
T ss_pred ccCchhcCCeeEEecC--CCcEEEeec-cceEEEeeecCCceEEEE-ecccceeeEEcCCCh-hheeeccCcceEEEcc-
Confidence 3334444555555543 344776655 467777777666554443 233466799999865 45555421 1224444
Q ss_pred ccCCCceEE-EEE-----cCCCCcee-EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCE-
Q psy8875 619 GMDGSHRNM-VIV-----SDIKWPNG-LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDW- 690 (734)
Q Consensus 619 ~ldG~~~~~-lv~-----~~l~~P~g-lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~- 690 (734)
+-...-. ++. ..+ +|.| ||+-..+++.++.|..+..+..+..++....++..++ ...-++|.-.++.
T Consensus 397 --~~k~~wt~~~~d~~~~~~f-hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp--~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 397 --DHKLEWTKIIEDPAECADF-HPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP--DGAFLAVGSHDNHI 471 (626)
T ss_pred --CCceeEEEEecCceeEeec-cCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC--CCCEEEEecCCCeE
Confidence 1111111 111 122 3444 6667778999999998888888888866666665432 2233444445565
Q ss_pred -EEEEeCCCCceEEEeccCCCceEEE
Q psy8875 691 -LYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 691 -lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
||-.+...+++.|+++.+|+.++.|
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithL 497 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHL 497 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEe
Confidence 4556777788889999999666655
No 182
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.10 E-value=20 Score=41.11 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=45.6
Q ss_pred eEEEecCCCeEEEEeCC---------------CCeEEEEecCCCceEEEEcCC-------CCCCCCeEEEE-ECCE---E
Q psy8875 638 GLTLDLVQRRLYWVDAK---------------LNEISSCDYNGGNRRLVLYSP-------QTLSHPFSIST-FEDW---L 691 (734)
Q Consensus 638 glavD~~~~~LYw~D~~---------------~~~I~~~~~dG~~~~~i~~~~-------~~~~~P~gl~v-~~~~---l 691 (734)
.+++|+..++|||.-.. ...|..++++....+=..+.. .....|.-+.+ .+++ +
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 46899999999998632 236777777765554444321 11223444444 2333 6
Q ss_pred EEEeCCCCceEEEeccCCCce
Q psy8875 692 YWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 692 ywtd~~~~~v~~~~~~~G~~~ 712 (734)
+..-.+++.++.+++.+|+.+
T Consensus 318 v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeCCCceEEEEECCCCcee
Confidence 666667777777777777654
No 183
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=93.05 E-value=5.5 Score=39.89 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.3
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS 536 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~ 536 (734)
....++|||-|.+++||-. ...++||.++...|.
T Consensus 26 ge~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~ 59 (236)
T PF14339_consen 26 GESLVGIDFRPANGQLYGL-GSTGRLYTINPATGA 59 (236)
T ss_pred CCeEEEEEeecCCCCEEEE-eCCCcEEEEECCCCe
Confidence 3577999999999999988 356899999988654
No 184
>KOG0272|consensus
Probab=93.03 E-value=4.4 Score=43.31 Aligned_cols=214 Identities=12% Similarity=0.022 Sum_probs=113.3
Q ss_pred EEEecCCcceEEEeeeccC-CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 496 TAIVNSTKSATAIDFVFRT-GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 496 ~~l~~~~~~~~~i~~d~~~-~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
..+......+.+++|+|.. +.-..+-...+.+.-..+++......+ ..-+..+..+|+.|.++.|- |-....+-...
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~-TasfD~tWRlW 288 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLG-TASFDSTWRLW 288 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceee-ecccccchhhc
Confidence 3444456678899999873 433344444555555555522211111 22345667788886655443 43333333334
Q ss_pred eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
++..+....+..+......+||..+ .|.|--|-.- ..++||=.. ......++...+....+++++ .+|+..-+-+
T Consensus 289 D~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR--tgr~im~L~gH~k~I~~V~fs-PNGy~lATgs 364 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR--TGRCIMFLAGHIKEILSVAFS-PNGYHLATGS 364 (459)
T ss_pred ccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecc--cCcEEEEecccccceeeEeEC-CCceEEeecC
Confidence 4444333233345556777899986 5677666411 123444322 222222334556667788887 5777777777
Q ss_pred CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
..+.+..-++.+.....++.....+ -..+-+ .+|+..+|-...+.+......+.+.++.|++
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nl--VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNL--VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred CCCcEEEeeecccccceecccccch--hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 7776666666665442222221111 122333 3567777766666655555555555555543
No 185
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=92.87 E-value=1.1 Score=51.00 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=45.9
Q ss_pred CCCCccceeeeccCCcEEEEeCCC-------------------CeEEEEeCCCC-------ceEEEEc------------
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAHK-------------------NTIELANFEGT-------MRKVLVR------------ 586 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~~-------------------~~I~~~~ldG~-------~~~~l~~------------ 586 (734)
.+..|++|++++.++.||++-... +.|++...++. ...+++.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 577899999999999999996543 37888887655 2222221
Q ss_pred -----CCCCCceeEEEeCCCCeEEEEe
Q psy8875 587 -----SYLDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 587 -----~~l~~P~~iavD~~~g~LYwtd 608 (734)
..+..|..|++|+. |.||+..
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~e 453 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQE 453 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEEe
Confidence 23679999999985 6666665
No 186
>KOG1407|consensus
Probab=92.61 E-value=13 Score=37.59 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=90.0
Q ss_pred eeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 480 ~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
+.+..|+..+.........+..-..-+.+.|.|..+++-+.+. ...|.-++.. ..+............-++.. ..+
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-dD~it~id~r--~~~~~~~~~~~~e~ne~~w~-~~n 159 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-DDRITFIDAR--TYKIVNEEQFKFEVNEISWN-NSN 159 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-cccEEEEEec--ccceeehhcccceeeeeeec-CCC
Confidence 3456677777765555555544445556677776666665543 2334333322 11111111111223345554 678
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-ee
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NG 638 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~g 638 (734)
+|||...+.+.|.+.......+..-+...-.+-..|.+||.+.++ -+- +....+..-+++--.-...+ ..+.|| +.
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf-A~G-sADAlvSLWD~~ELiC~R~i-sRldwpVRT 236 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF-ATG-SADALVSLWDVDELICERCI-SRLDWPVRT 236 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE-eec-cccceeeccChhHhhhheee-ccccCceEE
Confidence 899999999999988776433332232333455689999865433 332 12222222222221111112 456777 56
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 639 LTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
|++.+ .+++.-+-+..+.|--+....
T Consensus 237 lSFS~-dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 237 LSFSH-DGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred EEecc-CcceeeccCccceEEeEeccc
Confidence 77754 344433444455566555443
No 187
>KOG0272|consensus
Probab=92.55 E-value=4.2 Score=43.47 Aligned_cols=182 Identities=8% Similarity=0.003 Sum_probs=100.0
Q ss_pred EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875 497 AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575 (734)
Q Consensus 497 ~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ 575 (734)
.+...+.++..++|+|...+|--+ .....-...++.. ..+++. .+-...+.+||+.+ .|.|..|-.....=++.+
T Consensus 256 ~l~gH~~RVs~VafHPsG~~L~Ta-sfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHPSGKFLGTA-SFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWD 331 (459)
T ss_pred hhhcchhhheeeeecCCCceeeec-ccccchhhccccc--chhhHhhcccccccceeEecC-CCceeeccCccchhheee
Confidence 333445678889999866555433 2222222223332 222222 22234566788874 466666654433334456
Q ss_pred CCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875 576 FEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 576 ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~ 654 (734)
+.......++.+.+....+++++| +|+..-|-.+. .-+||...|--. ..++.........+-+++..++..++-+.
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred cccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEccc
Confidence 655555556667888889999998 68888887543 246665554332 22232333345567777767777777666
Q ss_pred CCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEEC
Q psy8875 655 LNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFE 688 (734)
Q Consensus 655 ~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~ 688 (734)
.+.+....-. .+-.++++ ..-..-+++++..
T Consensus 409 D~t~kiWs~~~~~~~ksLa---GHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLA---GHEGKVISLDISP 440 (459)
T ss_pred CcceeeecCCCcccchhhc---CCccceEEEEecc
Confidence 5555444433 33344443 2234456777743
No 188
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=92.51 E-value=0.091 Score=36.00 Aligned_cols=26 Identities=38% Similarity=0.995 Sum_probs=19.9
Q ss_pred CCcc--cceeccCCceEEecCCCeeeCC
Q psy8875 437 GSCS--QICLNEKGGFKCECVAGYIKDP 462 (734)
Q Consensus 437 ~~C~--~~C~n~~g~~~C~C~~gy~~~~ 462 (734)
+.|+ ++|+++.++|.|.|.+||.++.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCC
Confidence 4564 4899999999999999999975
No 189
>KOG0289|consensus
Probab=92.46 E-value=18 Score=39.02 Aligned_cols=143 Identities=10% Similarity=0.023 Sum_probs=77.8
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEc-CCCCceeEEEecCCC
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVS-DIKWPNGLTLDLVQR 646 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~-~l~~P~glavD~~~~ 646 (734)
..|++..........++...-...+++.++|.+.||.|++.. +.+.-.++ +|....++..+ .--.-..+++. ..+
T Consensus 283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d--~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDg 359 (506)
T KOG0289|consen 283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND--GTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDG 359 (506)
T ss_pred ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCC--ceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCc
Confidence 344444433333333333334556899999999999999832 33333333 45544433332 11113456663 677
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 647 RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 647 ~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.||-+-...+.|...++.... .+...+..-..-.+|++. +||-..+....+.|.-.+...-++.+.++
T Consensus 360 Lifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 888887777777777765544 222222222233467774 45544555555556666655555555554
No 190
>smart00181 EGF Epidermal growth factor-like domain.
Probab=92.41 E-value=0.13 Score=34.72 Aligned_cols=25 Identities=44% Similarity=1.192 Sum_probs=21.7
Q ss_pred CCccc-ceeccCCceEEecCCCeeeC
Q psy8875 437 GSCSQ-ICLNEKGGFKCECVAGYIKD 461 (734)
Q Consensus 437 ~~C~~-~C~n~~g~~~C~C~~gy~~~ 461 (734)
.+|.+ +|+++.++|.|.|++||.+.
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCccC
Confidence 45766 89999999999999999874
No 191
>KOG0310|consensus
Probab=92.32 E-value=20 Score=39.19 Aligned_cols=174 Identities=14% Similarity=0.057 Sum_probs=101.6
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
+.-+-|.+..+.++.+-...+.+...++++.. ...-+...-...+..++-+.+++|.+|-...+.|...++.... ..+
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v 190 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRV 190 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-cee
Confidence 34455666777777776555555555666433 2323333455678889999999999999999999999886553 223
Q ss_pred EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE-EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM-VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 585 ~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~-lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
++-+-..|..-++-...|.++.+..| +.|.+.++-++.+.+ ...........|.+-..+.+|+-+- -.+.+..++
T Consensus 191 ~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd- 266 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFD- 266 (487)
T ss_pred EEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEE-
Confidence 33334456655555567788888755 456666665333322 1112334456677765556666443 234455544
Q ss_pred CCCceEEEEcCCCCCCCC-eEEEEE
Q psy8875 664 NGGNRRLVLYSPQTLSHP-FSISTF 687 (734)
Q Consensus 664 dG~~~~~i~~~~~~~~~P-~gl~v~ 687 (734)
-++.+++.. -..+.| .+|+++
T Consensus 267 -~t~~Kvv~s--~~~~~pvLsiavs 288 (487)
T KOG0310|consen 267 -TTNYKVVHS--WKYPGPVLSIAVS 288 (487)
T ss_pred -ccceEEEEe--eecccceeeEEec
Confidence 345555543 123333 466763
No 192
>KOG0650|consensus
Probab=92.20 E-value=6.9 Score=43.72 Aligned_cols=136 Identities=10% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc-
Q psy8875 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN- 667 (734)
Q Consensus 589 l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~- 667 (734)
-..|..++++|..-+||++.. ..|...++--.....-+.....|...|+|++.++.|.... ..++|-.++++=+.
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSK 641 (733)
T ss_pred CCceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccCcc
Confidence 457889999999999999973 3444445433221111224567788888887777776554 34566666665331
Q ss_pred -eEEE------Ec-CCCCCCCC--------eEEEEECCEEEEEeCCCCceEEEeccCCCceE----EEecccccCCCccC
Q psy8875 668 -RRLV------LY-SPQTLSHP--------FSISTFEDWLYWSDWQQKAIYKANKFTGDNLT----AITGVHQTHEPLNS 727 (734)
Q Consensus 668 -~~~i------~~-~~~~~~~P--------~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~----~l~~~~~l~~P~~i 727 (734)
.+++ +. .......| -.+.||.+.||=--.++..|+-+.++.|..++ +|...-.-.+|+.+
T Consensus 642 Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLf 721 (733)
T KOG0650|consen 642 PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLF 721 (733)
T ss_pred hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEE
Confidence 1111 00 00011112 12445666666433455566666666776555 55433334566666
Q ss_pred C
Q psy8875 728 P 728 (734)
Q Consensus 728 ~ 728 (734)
+
T Consensus 722 s 722 (733)
T KOG0650|consen 722 S 722 (733)
T ss_pred e
Confidence 3
No 193
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.10 E-value=11 Score=38.60 Aligned_cols=142 Identities=14% Similarity=0.137 Sum_probs=81.9
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCce-EEEEeCC-CC----------CccceeeeccCCc--EEEEeCCCCeEEEEeCCCC
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSER-TVVIEED-KT----------IADGLAVDWIYSH--IYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~-~~----------~p~glAvD~~~~~--lY~td~~~~~I~~~~ldG~ 579 (734)
++.||+--.....|.|.+|..+... +..+... .. .-..+|||. +|. ||-+....+.|.++.||-.
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld~~ 156 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLDPE 156 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeCcc
Confidence 6889999888899999999865544 3333211 11 113689993 443 4555555667888888765
Q ss_pred ceEEE--EcCCCCCce---eEEEeCCCCeEEEEecCCC--ceE-EEeccCC-CceE--EEEEcCCCCceeEEEecCCCeE
Q psy8875 580 MRKVL--VRSYLDEPR---SLALNPIDGWMYWSDWGQN--AKI-ERAGMDG-SHRN--MVIVSDIKWPNGLTLDLVQRRL 648 (734)
Q Consensus 580 ~~~~l--~~~~l~~P~---~iavD~~~g~LYwtd~~~~--~~I-~~~~ldG-~~~~--~lv~~~l~~P~glavD~~~~~L 648 (734)
...+. ....+..+. +..| =|.||.++.... .+| ...++.- +... +.+.........|.-+|.+++|
T Consensus 157 tL~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 157 TLSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred cCceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeE
Confidence 43332 223333322 3333 589999986432 344 3344432 1111 1222334455678889999999
Q ss_pred EEEeCCCCeEE
Q psy8875 649 YWVDAKLNEIS 659 (734)
Q Consensus 649 Yw~D~~~~~I~ 659 (734)
|.=|.+.-.++
T Consensus 234 Y~wd~G~~v~Y 244 (250)
T PF02191_consen 234 YAWDNGYQVTY 244 (250)
T ss_pred EEEECCeEEEE
Confidence 98885533333
No 194
>KOG0308|consensus
Probab=92.02 E-value=17 Score=41.22 Aligned_cols=191 Identities=12% Similarity=0.137 Sum_probs=108.2
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE----------EEeCCCCCccceeeeccCCcEEEEeCCCCeEE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV----------VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~----------~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~ 572 (734)
..+..|++-...+.++.+-.-.++|+..+++.|..+.+ +..+......+||.. .++.|+++-...+-|.
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLR 196 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceE
Confidence 34556666444556666655566777777664422111 011223345678877 4556777766677777
Q ss_pred EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--eEEEEEcCCCCceeEEEecCCCeEEE
Q psy8875 573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--RNMVIVSDIKWPNGLTLDLVQRRLYW 650 (734)
Q Consensus 573 ~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--~~~lv~~~l~~P~glavD~~~~~LYw 650 (734)
+.+.....+.+-+.+...+.+.|.++....++.=+. ..+.|..-++.-+. .+.++.++. .-+|..++.=..+|.
T Consensus 197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s--SDgtIrlWdLgqQrCl~T~~vH~e~--VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS--SDGTIRLWDLGQQRCLATYIVHKEG--VWALQSSPSFTHVYS 272 (735)
T ss_pred EeccccccceeeeeccccceEEEEEcCCCCeEeecC--CCceEEeeeccccceeeeEEeccCc--eEEEeeCCCcceEEe
Confidence 777766555554557778889999987554444333 24666666654332 122333444 446777766677887
Q ss_pred EeCCCCeEEEEecCCCceEEEEcCCCCCCCCe---EEEEECCEEEEEeCCCCceEE
Q psy8875 651 VDAKLNEISSCDYNGGNRRLVLYSPQTLSHPF---SISTFEDWLYWSDWQQKAIYK 703 (734)
Q Consensus 651 ~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~---gl~v~~~~lywtd~~~~~v~~ 703 (734)
.+. .+.|++.++......+++-.+ .+|. .+...++.++++.|. ..|.|
T Consensus 273 G~r-d~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtd-s~I~r 323 (735)
T KOG0308|consen 273 GGR-DGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTD-SSIKR 323 (735)
T ss_pred cCC-CCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeecc-cccee
Confidence 774 467999888774433333222 2332 233345666555554 44443
No 195
>KOG0646|consensus
Probab=91.93 E-value=16 Score=39.73 Aligned_cols=201 Identities=9% Similarity=-0.002 Sum_probs=94.2
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC------
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG------ 578 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG------ 578 (734)
..+|+-++ .+...+.....+.||-..+..|..-.++ ..-.....-|.+- ..+.+++|-...+.|.+..+-.
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccccc
Confidence 34555553 3333333334566666666655432222 1122233334443 4577777877777777665411
Q ss_pred C-ce--EEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 579 T-MR--KVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 579 ~-~~--~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
. .. .-.+........+|.+.+- +.+||-+.. ...|...++.+.....-+. --..+++++||+.+.++|+-.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt- 236 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT- 236 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecC--CceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-
Confidence 0 00 0111222223344444432 334554432 2222222222221111111 123468999998888888665
Q ss_pred CCCeEEEEecCCCc-----------------eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 654 KLNEISSCDYNGGN-----------------RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 654 ~~~~I~~~~~dG~~-----------------~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
..+.|+..++.+.. +..++. ......-.-|++ ..+.|..+-...+.|...+..+-+-++
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 45788887765432 111111 111112334666 567777776666666666554444333
No 196
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=91.92 E-value=0.14 Score=34.42 Aligned_cols=20 Identities=40% Similarity=0.918 Sum_probs=16.4
Q ss_pred CccccCCCcceeecCCCcEe
Q psy8875 401 HKCVDLPVGYMCECNEGYKL 420 (734)
Q Consensus 401 ~~C~~~~~~~~C~C~~G~~l 420 (734)
++|++++++|+|.|+.||.+
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CEEecCCCCeEeECCCCCcc
Confidence 57888888899999998854
No 197
>PHA02713 hypothetical protein; Provisional
Probab=91.68 E-value=26 Score=40.45 Aligned_cols=186 Identities=14% Similarity=0.114 Sum_probs=96.3
Q ss_pred CCeEEEEEeCC------CcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCC-----CCeEEEEeCCCCce
Q psy8875 514 TGMIFWSDISE------KKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAH-----KNTIELANFEGTMR 581 (734)
Q Consensus 514 ~~~lyw~d~~~------~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~-----~~~I~~~~ldG~~~ 581 (734)
.+.||++-... ..+++.++.... ...+. .+..|+ +.++-...++||+.-.. ...+++.++....-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~-~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELP-PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCC-CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 68899885421 346677765322 12222 333333 22333356899998543 23577777765443
Q ss_pred EEEEcCCCCCce---eEEEeCCCCeEEEEecCC----------------------CceEEEeccCCCceEEEEEcCCCCc
Q psy8875 582 KVLVRSYLDEPR---SLALNPIDGWMYWSDWGQ----------------------NAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 582 ~~l~~~~l~~P~---~iavD~~~g~LYwtd~~~----------------------~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
..+ ..+..|+ ++++ .+|+||+.--.. ...+++.+..-..-+.+ ..+..|
T Consensus 380 ~~~--~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v--~~m~~~ 453 (557)
T PHA02713 380 KML--PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL--PNFWTG 453 (557)
T ss_pred EEC--CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec--CCCCcc
Confidence 332 2333332 2232 479999975211 13466666543222211 122222
Q ss_pred ---eeEEEecCCCeEEEEeCCC------CeEEEEecCC-CceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC--ceEEE
Q psy8875 637 ---NGLTLDLVQRRLYWVDAKL------NEISSCDYNG-GNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK--AIYKA 704 (734)
Q Consensus 637 ---~glavD~~~~~LYw~D~~~------~~I~~~~~dG-~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~--~v~~~ 704 (734)
.++++ .+++||+.-... ..|++++... ..=+.+..- ..-..-.++++.+++||++-...+ .+.+.
T Consensus 454 r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 454 TIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILHDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEECCEEEEEeeecceeehhhc
Confidence 24443 589999985321 3567877765 222222211 111223578889999999854333 45566
Q ss_pred eccCCCc
Q psy8875 705 NKFTGDN 711 (734)
Q Consensus 705 ~~~~G~~ 711 (734)
|+.+.+-
T Consensus 531 d~~~~~W 537 (557)
T PHA02713 531 NVYTYEW 537 (557)
T ss_pred Ccccccc
Confidence 6655543
No 198
>KOG0270|consensus
Probab=91.63 E-value=11 Score=40.78 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=91.6
Q ss_pred EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--------
Q psy8875 506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-------- 577 (734)
Q Consensus 506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-------- 577 (734)
.+|+|......|..+-...++|..-+++.|....++. ..-..+..|+..+....+..+-+..+++...+..
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 4566666666777777777888888888766544443 2334567788777777777777766777666543
Q ss_pred ----CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc-eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 578 ----GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 578 ----G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~-~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
|...++.+ ....|..+.+....|.|||.|.++.+ .++.. ..+. ....||.+......|..+.
T Consensus 326 wk~~g~VEkv~w--~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---------~AHd--~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 326 WKFDGEVEKVAW--DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---------KAHD--DEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred EEeccceEEEEe--cCCCceeEEEecCCceEEeeecCCCCCceeEE---------Eecc--CCcceEEecCCCCcceeec
Confidence 22222222 12344455555556777777754321 12211 1111 1245777776666777777
Q ss_pred CCCCeEEEEecCCCceEEEEc
Q psy8875 653 AKLNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 653 ~~~~~I~~~~~dG~~~~~i~~ 673 (734)
+..+.|...++++.+.+.+..
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred cccceEEEEeecCCCCccccc
Confidence 766777777777776655543
No 199
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=91.59 E-value=1.5 Score=49.94 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=44.8
Q ss_pred CCcceEEEeeeccCCeEEEEEeCC-------------------CcEEEEecCCC-------CceEEEEe-----------
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISE-------------------KKIYKAPIDEG-------SERTVVIE----------- 543 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~-------------------~~I~~~~l~~g-------~~~~~~~~----------- 543 (734)
.+.+|.+|.+++..+.||++-... +.|+++...++ ....+++.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 467899999999999999985433 37999887743 11222222
Q ss_pred -----CCCCCccceeeeccCCcEEEEeC
Q psy8875 544 -----EDKTIADGLAVDWIYSHIYWTDA 566 (734)
Q Consensus 544 -----~~~~~p~glAvD~~~~~lY~td~ 566 (734)
..+..|.+|++|+. ++||+..-
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~eD 454 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQED 454 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEEeC
Confidence 23678999999975 55666543
No 200
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.53 E-value=23 Score=38.52 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=63.2
Q ss_pred CCeEEEEecCCCceEEEecc-CCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCC-C
Q psy8875 601 DGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSP-Q 676 (734)
Q Consensus 601 ~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~-~ 676 (734)
.|+||+.++. ++++..++ +|+..-..-... ..+..+..+ ..+.+|+.. ..+.+..++.+ |..+=..-... .
T Consensus 111 ~G~i~~g~~~--g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~ 185 (370)
T COG1520 111 DGKIYVGSWD--GKLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPL 185 (370)
T ss_pred CCeEEEeccc--ceEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCcc
Confidence 6889999863 47888888 676543332222 122222333 467777774 45678888876 54433321111 0
Q ss_pred CCCCCeEEEEECCEEEEEeCC-CCceEEEeccCCCceEE
Q psy8875 677 TLSHPFSISTFEDWLYWSDWQ-QKAIYKANKFTGDNLTA 714 (734)
Q Consensus 677 ~~~~P~gl~v~~~~lywtd~~-~~~v~~~~~~~G~~~~~ 714 (734)
......+..+..+.+|+.... +..++.++..+|+....
T Consensus 186 ~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 186 SLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ccccccCceeecceEEEecCCCcceEEEEEccCCcEeee
Confidence 112222233788889998664 45788888888876554
No 201
>KOG0994|consensus
Probab=91.35 E-value=1.4 Score=52.34 Aligned_cols=70 Identities=24% Similarity=0.469 Sum_probs=41.5
Q ss_pred cccccccccCCCCCcccccccccccCCCCCCCCCCCCC---CCCcccccccc-----CCCCCcC------ccccCCCcce
Q psy8875 346 RIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDED---PTKCGVDECAK-----DNGGCLH------KCVDLPVGYM 411 (734)
Q Consensus 346 ~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~---~~~C~~~eC~~-----~~~~C~~------~C~~~~~~~~ 411 (734)
..-| .|.+||++.+|. +|.+++.+. +..|..=||.. .++.|.. +|+-..-|-.
T Consensus 933 ~ivC---~C~~GY~G~RCe----------~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~h 999 (1758)
T KOG0994|consen 933 QIVC---HCQEGYSGSRCE----------ICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDH 999 (1758)
T ss_pred ceee---ecccCccccchh----------hhcccccCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccc
Confidence 3455 677788888876 677777442 22343323322 1334432 4666666777
Q ss_pred e-ecCCCcEecCCCCccc
Q psy8875 412 C-ECNEGYKLSSNRHTCI 428 (734)
Q Consensus 412 C-~C~~G~~l~~~~~~C~ 428 (734)
| .|.+||....-.++|.
T Consensus 1000 Ce~Ck~Gf~GdA~~q~Cq 1017 (1758)
T KOG0994|consen 1000 CEHCKDGFYGDALRQNCQ 1017 (1758)
T ss_pred hhhccccchhHHHHhhhh
Confidence 7 5999998765555553
No 202
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=91.07 E-value=19 Score=36.31 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=57.7
Q ss_pred eCCCCeEEEEeCCCCceE--EEE------cCCCCCceeEEEe--CCCCeEEEEecCCCceEEEecc-C---CCceEEEEE
Q psy8875 565 DAHKNTIELANFEGTMRK--VLV------RSYLDEPRSLALN--PIDGWMYWSDWGQNAKIERAGM-D---GSHRNMVIV 630 (734)
Q Consensus 565 d~~~~~I~~~~ldG~~~~--~l~------~~~l~~P~~iavD--~~~g~LYwtd~~~~~~I~~~~l-d---G~~~~~lv~ 630 (734)
|..+..|.+..+++..+. .|. ...+..|.|+++. +.+|-+|+--.+..+.|....+ | |..+..++.
T Consensus 120 dR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR 199 (364)
T COG4247 120 DRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVR 199 (364)
T ss_pred cccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeE
Confidence 344566777666654332 222 2456788888884 4556555554444566666554 3 322222332
Q ss_pred c-CC-CCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 631 S-DI-KWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 631 ~-~l-~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
. ++ .+..|+..|-..+.||+++.. -.||++..
T Consensus 200 ~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~A 233 (364)
T COG4247 200 QFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEA 233 (364)
T ss_pred eeecCCcccceeeccccceEEEeecc-ceeeeccc
Confidence 1 11 245799999999999999743 46888774
No 203
>KOG0318|consensus
Probab=90.98 E-value=29 Score=38.42 Aligned_cols=194 Identities=15% Similarity=0.113 Sum_probs=94.1
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCC-ce
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGT-MR 581 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~-~~ 581 (734)
-...+-|.|. +..|.+-...++|+.++-..|...-.+-......-.=.||-|. ...-+.|-+....+.+.+.... ..
T Consensus 192 FV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 192 FVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred ceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 4566778774 7788887788888887655443333332111111111334443 2333444444455555444322 22
Q ss_pred EEEEcCCC--CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 582 KVLVRSYL--DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 582 ~~l~~~~l--~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
+++..... .+-.|+.- .++.|.-.. ..+.|.-.+.+-.....++......-.+|++.+.+..||-++ ..+.|.
T Consensus 271 ~t~~~~~~v~dqqvG~lW--qkd~lItVS--l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~ 345 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLW--QKDHLITVS--LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHIN 345 (603)
T ss_pred EEeecCCchhceEEEEEE--eCCeEEEEE--cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEE
Confidence 22221111 11112111 122222221 123333333321123334445555667899987777777665 456777
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEEEe
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~~~ 705 (734)
.-+......-.+.. ...-..-.+|+..+ +.||-.-|. ..|.++.
T Consensus 346 ~W~~~~g~~~~~~g-~~h~nqI~~~~~~~~~~~~t~g~D-d~l~~~~ 390 (603)
T KOG0318|consen 346 SWDSGSGTSDRLAG-KGHTNQIKGMAASESGELFTIGWD-DTLRVIS 390 (603)
T ss_pred EEecCCcccccccc-ccccceEEEEeecCCCcEEEEecC-CeEEEEe
Confidence 76654332222221 12334566888876 778877776 5566664
No 204
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=90.73 E-value=0.13 Score=34.27 Aligned_cols=18 Identities=61% Similarity=1.501 Sum_probs=13.2
Q ss_pred ccccCC-CcceeecCCCcE
Q psy8875 402 KCVDLP-VGYMCECNEGYK 419 (734)
Q Consensus 402 ~C~~~~-~~~~C~C~~G~~ 419 (734)
.|++.. ++|+|.|++||.
T Consensus 11 ~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 11 TCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp EEEEESTSEEEEEEBTTEE
T ss_pred EEEeCCCCCEEeECCCCCc
Confidence 677776 777777777774
No 205
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.71 E-value=26 Score=38.14 Aligned_cols=141 Identities=11% Similarity=0.050 Sum_probs=68.5
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceE--EEE--eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCceEEEEcCC
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERT--VVI--EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMRKVLVRSY 588 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~--~~~--~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~~~l~~~~ 588 (734)
.+++|+. ...+.|+.++++.+...- .+. ...+..|...+ .++||+.+... .++..+. +|...-..-...
T Consensus 68 dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 68 DGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWDG-KLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEecccc-eEEEEECCCCcEEEEEecCC
Confidence 6788876 345678888877554211 011 01222333332 67888888753 7777777 565543322222
Q ss_pred -CCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEc---CCCCceeEEEecCCCeEEEEeCC-CCeEEEEe
Q psy8875 589 -LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVS---DIKWPNGLTLDLVQRRLYWVDAK-LNEISSCD 662 (734)
Q Consensus 589 -l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~---~l~~P~glavD~~~~~LYw~D~~-~~~I~~~~ 662 (734)
.......++ ..+.+|+.. ..++++..+.+ |+.+-..-.. .+......+ ...+.+|+.... ...++.++
T Consensus 142 ~~~~~~~~v~--~~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 142 SPYYASPPVV--GDGTVYVGT--DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred CeEEecCcEE--cCcEEEEec--CCCeEEEEEccCCcEEEEEecCCccccccccCce--eecceEEEecCCCcceEEEEE
Confidence 011111222 345666663 13566666665 5443221111 122222222 246677777543 33566666
Q ss_pred c-CCC
Q psy8875 663 Y-NGG 666 (734)
Q Consensus 663 ~-dG~ 666 (734)
. +|.
T Consensus 216 ~~~G~ 220 (370)
T COG1520 216 AEDGT 220 (370)
T ss_pred ccCCc
Confidence 5 444
No 206
>KOG0296|consensus
Probab=90.69 E-value=25 Score=37.15 Aligned_cols=173 Identities=8% Similarity=-0.048 Sum_probs=96.2
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
.....++++| +.+|-.|-.+..+-++.+.........+.+.-.....+.+..... |.+.-+..++|....++-...+
T Consensus 65 ~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 65 DSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred CceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce--EEEecCCCccEEEEEcccCceE
Confidence 4566788887 777888877777777766654443333334445566666654332 2222233455555444332222
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEec
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~ 706 (734)
..+.....--.=|..-+ ..+++.+-...+.|+...+..+....+++++ ..+--.|=.+-.|+...+-...+.|+..|+
T Consensus 142 ~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 142 WKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred EEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCCceEEEEecCceEEEEec
Confidence 22211111112244443 5567777777888988887765554555432 111112323333555555556789999999
Q ss_pred cCCCceEEEecccccCCC
Q psy8875 707 FTGDNLTAITGVHQTHEP 724 (734)
Q Consensus 707 ~~G~~~~~l~~~~~l~~P 724 (734)
.+|+.+..+.+...+..|
T Consensus 220 ktg~p~~~~~~~e~~~~~ 237 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELP 237 (399)
T ss_pred CCCceeEEecccccCcCC
Confidence 999998888765554433
No 207
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=90.61 E-value=0.26 Score=32.75 Aligned_cols=24 Identities=38% Similarity=1.138 Sum_probs=19.8
Q ss_pred Cccc--ceeccC-CceEEecCCCeeeC
Q psy8875 438 SCSQ--ICLNEK-GGFKCECVAGYIKD 461 (734)
Q Consensus 438 ~C~~--~C~n~~-g~~~C~C~~gy~~~ 461 (734)
+|.+ +|++.. ++|.|.|++||.+.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 4544 788888 99999999999874
No 208
>smart00284 OLF Olfactomedin-like domains.
Probab=90.50 E-value=18 Score=36.98 Aligned_cols=138 Identities=12% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCce-EEEEeC-C----------CCCccceeeeccCCc-EEEEeCCCCeEEEEeCCCCc
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSER-TVVIEE-D----------KTIADGLAVDWIYSH-IYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~-~----------~~~p~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~ 580 (734)
++.||+.-..+..|.|.+|..+... +.++.. + ...--.||||..+=. ||-|....+.|.++.|+-..
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t 162 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT 162 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence 6899998888889999999865442 222221 1 111236899943322 56566667889988887655
Q ss_pred eEEEE--cCCCCCc---eeEEEeCCCCeEEEEecC--CCceEE-EeccCCCceEE---EEEcCCCCceeEEEecCCCeEE
Q psy8875 581 RKVLV--RSYLDEP---RSLALNPIDGWMYWSDWG--QNAKIE-RAGMDGSHRNM---VIVSDIKWPNGLTLDLVQRRLY 649 (734)
Q Consensus 581 ~~~l~--~~~l~~P---~~iavD~~~g~LYwtd~~--~~~~I~-~~~ldG~~~~~---lv~~~l~~P~glavD~~~~~LY 649 (734)
..+.- .....++ .+..| =|.||.++.. ...+|. ..++..+.... ........-..|.-.|.+++||
T Consensus 163 L~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY 239 (255)
T smart00284 163 LTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLY 239 (255)
T ss_pred ceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEE
Confidence 44432 2333222 23333 5889999842 224553 34444332211 1112223334577788888999
Q ss_pred EEeCC
Q psy8875 650 WVDAK 654 (734)
Q Consensus 650 w~D~~ 654 (734)
.=|-+
T Consensus 240 ~wdng 244 (255)
T smart00284 240 AWNNG 244 (255)
T ss_pred EEeCC
Confidence 77744
No 209
>KOG0276|consensus
Probab=90.47 E-value=36 Score=38.60 Aligned_cols=156 Identities=9% Similarity=0.031 Sum_probs=91.9
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
.+..+|+++|.+-.+. +...++.+...+.+.......+-- -..|.--|.=-...+-.++-+...+|++.+.+...+.
T Consensus 14 dRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred CceeeeecCCCCceEE-EeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 4556667766544333 223345554444442222111110 1112211211134556667777889999999988777
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE-EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN-MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~-~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
..++..-...|.|||+|..-++.-+ +....|..-+.++.... .......+....|++.|....-|.+-+-..+|..-
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLts--SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTS--SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEec--CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 7777777889999999987554433 23456766666766543 33445567778899988887777776554544444
Q ss_pred ec
Q psy8875 662 DY 663 (734)
Q Consensus 662 ~~ 663 (734)
.+
T Consensus 169 sl 170 (794)
T KOG0276|consen 169 SL 170 (794)
T ss_pred Ec
Confidence 44
No 210
>KOG0268|consensus
Probab=90.46 E-value=5.2 Score=42.02 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=95.8
Q ss_pred CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc--eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM--RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~--~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
+......+...++.-.|..+-...+.|...++.... .++++ ...+++|...| .++.|.+.. +...|+..+|--
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnP-eafnF~~a~-ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNP-EAFNFVAAN-EDHNLYTYDMRN 260 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCc-cccceeecc-ccccceehhhhh
Confidence 344455666666766777666667778888774332 22332 34688999999 888988873 457888888765
Q ss_pred CceEEEEEcC-CCCceeEEEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEE---eCC
Q psy8875 623 SHRNMVIVSD-IKWPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS---DWQ 697 (734)
Q Consensus 623 ~~~~~lv~~~-l~~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt---d~~ 697 (734)
-.+.+-+..+ ... -|.||+. .|.=|++-+....|.-+..+.+.-+.++.. ..+++-+++.+.-+.-|+. |-+
T Consensus 261 l~~p~~v~~dhvsA--V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 261 LSRPLNVHKDHVSA--VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred hcccchhhccccee--EEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCc
Confidence 4443333221 222 2344433 567777877778888888776654444432 5688899999866555553 334
Q ss_pred CCceEEEe
Q psy8875 698 QKAIYKAN 705 (734)
Q Consensus 698 ~~~v~~~~ 705 (734)
+-+||+++
T Consensus 338 nvRlWka~ 345 (433)
T KOG0268|consen 338 NVRLWKAK 345 (433)
T ss_pred ceeeeecc
Confidence 44566654
No 211
>KOG0263|consensus
Probab=90.38 E-value=33 Score=39.73 Aligned_cols=199 Identities=11% Similarity=0.048 Sum_probs=108.6
Q ss_pred EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeC
Q psy8875 498 IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANF 576 (734)
Q Consensus 498 l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~l 576 (734)
++.....+.+..|.|..+ +.++-.....|+--.++ .....++..+.+.....+.+-|. -.||+.... .+-.+...
T Consensus 447 L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWST 522 (707)
T ss_pred eecCCCceeeeeeccccc-ceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeec
Confidence 444455667888887544 33444445566666665 22233444433333334555533 356665543 33333444
Q ss_pred CCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 577 EGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 577 dG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
+-....-++.+.+....-++++|...+|.--.....-++|-+ ..|..++ +..+.-....+|++.+-+..| .+-...+
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv-~~G~~VR-iF~GH~~~V~al~~Sp~Gr~L-aSg~ed~ 599 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV-STGNSVR-IFTGHKGPVTALAFSPCGRYL-ASGDEDG 599 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEc-CCCcEEE-EecCCCCceEEEEEcCCCceE-eecccCC
Confidence 544444455578888888999997766553311111233332 2344444 344444555778887544333 3334556
Q ss_pred eEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEe
Q psy8875 657 EISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~ 705 (734)
.|...++.++.+...+.. .-..-.+|++ ..+.+.++....+.|..-+
T Consensus 600 ~I~iWDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred cEEEEEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 777778776554433332 2345567777 6778888887777765544
No 212
>KOG4378|consensus
Probab=90.06 E-value=19 Score=39.56 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=96.6
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
..+.+|+|.+...+|--+. ..+.|....+..+...+.+....-...+-|.+.+..+.|..+-...+.|.+.+..|....
T Consensus 122 stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~ 200 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI 200 (673)
T ss_pred ceeEEEEecCCcceeEEec-cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc
Confidence 4567788886555443222 234454444443322222221112233455666677788888888899999999887665
Q ss_pred EEEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE-EEEEcCCCCc-eeEEEecCCCeEEEEeCCCCeEE
Q psy8875 583 VLVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN-MVIVSDIKWP-NGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 583 ~l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~-~lv~~~l~~P-~glavD~~~~~LYw~D~~~~~I~ 659 (734)
.-.... -..-+||.+-|.+..|+++- |...+|...+....... .|+ ...| ..+++- ..|.+..+-..+++|.
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsV-G~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~-~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSV-GYDKKINIYDIRSQASTDRLT---YSHPLSTVAFS-ECGTYLCAGNSKGELI 275 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEe-cccceEEEeecccccccceee---ecCCcceeeec-CCceEEEeecCCceEE
Confidence 443333 33447999999999999887 55678888776532211 121 1223 356664 5667777777788999
Q ss_pred EEecCCCc
Q psy8875 660 SCDYNGGN 667 (734)
Q Consensus 660 ~~~~dG~~ 667 (734)
.+++.+..
T Consensus 276 ~YD~R~~k 283 (673)
T KOG4378|consen 276 AYDMRSTK 283 (673)
T ss_pred EEecccCC
Confidence 99988764
No 213
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=90.03 E-value=0.32 Score=32.55 Aligned_cols=25 Identities=40% Similarity=1.080 Sum_probs=20.8
Q ss_pred CCcc--cceeccCCceEEecCCCeeeC
Q psy8875 437 GSCS--QICLNEKGGFKCECVAGYIKD 461 (734)
Q Consensus 437 ~~C~--~~C~n~~g~~~C~C~~gy~~~ 461 (734)
..|. ++|+++.++|.|.|+.||.+.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 3454 589999999999999999875
No 214
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=21 Score=35.02 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=82.5
Q ss_pred cceeeeccCCcEEEEeC--CCCeEEEEeCCCCceEEEEcCCCCCc----eeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 550 DGLAVDWIYSHIYWTDA--HKNTIELANFEGTMRKVLVRSYLDEP----RSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~--~~~~I~~~~ldG~~~~~l~~~~l~~P----~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
.||.++ .++||-+-. +..+|++.++.+.. ++.+..+..| .||+. ...++|...|.+ +.-+..+.+.-
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq--~~~s~~l~~~~~FgEGit~--~gd~~y~LTw~e-gvaf~~d~~t~ 121 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQ--EIFSEKLAPDTVFGEGITK--LGDYFYQLTWKE-GVAFKYDADTL 121 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCce--EEEEeecCCccccccceee--ccceEEEEEecc-ceeEEEChHHh
Confidence 456665 567776643 35689999988543 2333344422 35555 567788777754 33334333321
Q ss_pred ceEEEEEcCCCC---ceeEEEecCCCeEEEEeCCCCeEEEEecCC--CceEEEEc-CCCCCCCCeEEEEECCEEEEEeCC
Q psy8875 624 HRNMVIVSDIKW---PNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNRRLVLY-SPQTLSHPFSISTFEDWLYWSDWQ 697 (734)
Q Consensus 624 ~~~~lv~~~l~~---P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~i~~-~~~~~~~P~gl~v~~~~lywtd~~ 697 (734)
+.+ ....+ --||+-| ..+|..+| ++..+..-+... ...++.+. ....+..-.-|....|.||.--|.
T Consensus 122 --~~l--g~~~y~GeGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~ 194 (262)
T COG3823 122 --EEL--GRFSYEGEGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQ 194 (262)
T ss_pred --hhh--cccccCCcceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeee
Confidence 111 11111 1345543 44444333 333444333211 11111121 111222334467788999999999
Q ss_pred CCceEEEeccCCCceEEEe
Q psy8875 698 QKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 698 ~~~v~~~~~~~G~~~~~l~ 716 (734)
+.+|.|+++.+|+.+..+.
T Consensus 195 t~~I~rI~p~sGrV~~wid 213 (262)
T COG3823 195 TTRIARIDPDSGRVVAWID 213 (262)
T ss_pred ecceEEEcCCCCcEEEEEE
Confidence 9999999999999888774
No 215
>KOG0281|consensus
Probab=89.83 E-value=1.2 Score=46.24 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce----E
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR----N 626 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~----~ 626 (734)
|.++.. +++.++-+...+|.+.+.... ...+++ ..-...-++.+ .+|+|.-.. ....|.+-+|+.... .
T Consensus 241 LCLqyd-~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf--~ng~mvtcS--kDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 241 LCLQYD-ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRF--SNGYMVTCS--KDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred Eeeecc-ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEE--eCCEEEEec--CCceeEEEeccCchHHHHHH
Confidence 445533 458888888888888887543 334444 33445567777 456665443 346777777776542 2
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc-eEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEE
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN-RRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYK 703 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~ 703 (734)
+++ +.....|. ||+ ..++.++-++...|..-+++... .+++ -.|-.|||- +.++|.++-...+.|.-
T Consensus 315 VLv-GHrAaVNv--Vdf-d~kyIVsASgDRTikvW~~st~efvRtl------~gHkRGIAClQYr~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 315 VLV-GHRAAVNV--VDF-DDKYIVSASGDRTIKVWSTSTCEFVRTL------NGHKRGIACLQYRDRLVVSGSSDNTIRL 384 (499)
T ss_pred HHh-hhhhheee--ecc-ccceEEEecCCceEEEEeccceeeehhh------hcccccceehhccCeEEEecCCCceEEE
Confidence 222 22333343 443 34455566667778777766443 3333 245667776 88999999888888877
Q ss_pred EeccCCCceEEEec
Q psy8875 704 ANKFTGDNLTAITG 717 (734)
Q Consensus 704 ~~~~~G~~~~~l~~ 717 (734)
.+...|.-+.+|.+
T Consensus 385 wdi~~G~cLRvLeG 398 (499)
T KOG0281|consen 385 WDIECGACLRVLEG 398 (499)
T ss_pred EeccccHHHHHHhc
Confidence 77777766555543
No 216
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=89.74 E-value=0.71 Score=38.60 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576 (734)
Q Consensus 544 ~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l 576 (734)
.++..|.||++++..+.||+++...+.|.+...
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 478899999999999999999999999988764
No 217
>KOG0273|consensus
Probab=89.73 E-value=30 Score=37.77 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=90.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~ 580 (734)
.+.+.+|||.. .+.+..+-...+.+...+.+ |....++ ....-.=++|-|...--|....+ .++|...+.-...
T Consensus 235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl---~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTL---GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhh---hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 35678899974 56777777777877777777 4332222 11222236677766555555443 4555555543333
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEE--eCCCCeE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV--DAKLNEI 658 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~--D~~~~~I 658 (734)
.+..+ .+...-++-||+....=|.+-. ..+.|.+..+++.....-+...-...++|-.++.+. |.-+ |-.+-+|
T Consensus 310 ~~q~f--~~~s~~~lDVdW~~~~~F~ts~-td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 310 VKQQF--EFHSAPALDVDWQSNDEFATSS-TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKI 385 (524)
T ss_pred EEEee--eeccCCccceEEecCceEeecC-CCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEe
Confidence 33322 2333337888888877777763 346788888877655443434455578899885444 4444 3344567
Q ss_pred EEEecCC
Q psy8875 659 SSCDYNG 665 (734)
Q Consensus 659 ~~~~~dG 665 (734)
+.+..++
T Consensus 386 Ws~~~~~ 392 (524)
T KOG0273|consen 386 WSMGQSN 392 (524)
T ss_pred eecCCCc
Confidence 7655443
No 218
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.52 E-value=30 Score=36.27 Aligned_cols=159 Identities=15% Similarity=0.066 Sum_probs=85.1
Q ss_pred eccCCcEEEEeCC----CCeEEEEeCCCCceEE-EEcCCCCCceeEEEeCCCCeEEEEecCC----------------Cc
Q psy8875 555 DWIYSHIYWTDAH----KNTIELANFEGTMRKV-LVRSYLDEPRSLALNPIDGWMYWSDWGQ----------------NA 613 (734)
Q Consensus 555 D~~~~~lY~td~~----~~~I~~~~ldG~~~~~-l~~~~l~~P~~iavD~~~g~LYwtd~~~----------------~~ 613 (734)
.+.++.||.|+.. .+.|-+.+.....+++ -+....-.|-.|.+.|....|.+++-|- .+
T Consensus 59 s~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 59 SPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred cCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 4456788888654 6789999998444443 4455666899999998776888887331 01
Q ss_pred eEEEe-ccCCCceEEEEE-cCC--CCceeEEEecCCCeEEEEeCCCC-------eEEEEecCCCceEEEEcCCC-----C
Q psy8875 614 KIERA-GMDGSHRNMVIV-SDI--KWPNGLTLDLVQRRLYWVDAKLN-------EISSCDYNGGNRRLVLYSPQ-----T 677 (734)
Q Consensus 614 ~I~~~-~ldG~~~~~lv~-~~l--~~P~glavD~~~~~LYw~D~~~~-------~I~~~~~dG~~~~~i~~~~~-----~ 677 (734)
.|... ..+|........ ..+ ..-+=|+++ ..+.+.++--..+ -|...+.++ ..+.+ ..+. .
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~-~~p~~~~~~l 215 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLL-PAPEEQWRRL 215 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCCC-cceec-cCChHHHHhh
Confidence 22222 122322211110 000 112346666 3455555532111 222222222 12222 1111 1
Q ss_pred CCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 678 LSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 678 ~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
-.+--+|++. ++.+.+|....+.+...+..+|..+..+.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 1233467774 45788888888888888888888766543
No 219
>KOG2111|consensus
Probab=89.47 E-value=26 Score=36.35 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=78.0
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
.++.|.|-|.....|.-..+.+..+ +|-+. +.+|-+.- ..+|++....-..+..-..+....|
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~------------~V~l~--r~riVvvl---~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIK------------AVKLR--RDRIVVVL---ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CceEEEEecccCcEEEEEEecccee------------eEEEc--CCeEEEEe---cCeEEEEEcCCChhheeeeecccCC
Confidence 3455667666555554444444333 33332 23333333 2455555544333333333456678
Q ss_pred eeEE-EecCCCeEEEEe--CCCCeEEEEecCCCce--EEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEE-eccCC
Q psy8875 637 NGLT-LDLVQRRLYWVD--AKLNEISSCDYNGGNR--RLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKA-NKFTG 709 (734)
Q Consensus 637 ~gla-vD~~~~~LYw~D--~~~~~I~~~~~dG~~~--~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~-~~~~G 709 (734)
+||- +.+..+.-+.+= .+.+.|..+++.-... ..++..+ ...-.-|++ -.|.+..|-..++.|+|+ +..+|
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 8874 565666666554 4567899988876655 2333221 112223455 568899999888988877 66777
Q ss_pred CceEEE
Q psy8875 710 DNLTAI 715 (734)
Q Consensus 710 ~~~~~l 715 (734)
+.+..+
T Consensus 215 ~~l~E~ 220 (346)
T KOG2111|consen 215 TLLQEL 220 (346)
T ss_pred cEeeee
Confidence 766654
No 220
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.36 E-value=39 Score=39.29 Aligned_cols=156 Identities=15% Similarity=0.038 Sum_probs=85.2
Q ss_pred CCccceeeeccCCcEEEEeC-------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC---------
Q psy8875 547 TIADGLAVDWIYSHIYWTDA-------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--------- 610 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~-------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--------- 610 (734)
..+...+|.+.++.+.++.. ...+|++....|..+.++....+ ..-.++|..+.|++...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~---t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSL---TRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCC---CCceECCCCCceEEEecCcceEEEecc
Confidence 45678888888888776652 24578888887666443322223 334556655555554312
Q ss_pred -CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE---EecCCCceEE-----EEcCCCCCC-C
Q psy8875 611 -QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS---CDYNGGNRRL-----VLYSPQTLS-H 680 (734)
Q Consensus 611 -~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~---~~~dG~~~~~-----i~~~~~~~~-~ 680 (734)
..+.|++..+++..... ..-..+..|.+.+.+.+|.++-. ++|+. +..+++.++. +. ..+. .
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVG---PGLGDT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEee---cccCCc
Confidence 22455555555543322 11123678889888888888763 46666 3434443332 21 1122 2
Q ss_pred CeEEEE-ECCEEEEEeCCC-CceEEEeccCCCceEE
Q psy8875 681 PFSIST-FEDWLYWSDWQQ-KAIYKANKFTGDNLTA 714 (734)
Q Consensus 681 P~gl~v-~~~~lywtd~~~-~~v~~~~~~~G~~~~~ 714 (734)
+.+|+. .++.|++...+. ..|+++.. +|...+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~v-DG~~~~~ 533 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNL-DGSNSDA 533 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEec-CCccccc
Confidence 466666 456676654332 34777654 4554443
No 221
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.31 E-value=1.6 Score=30.54 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=29.4
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEe
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALN 598 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD 598 (734)
.+++||+++...+.|.++++.......-+ .....|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE-ECCCCCceEEeC
Confidence 46789999999999999987544332223 235789999874
No 222
>KOG2048|consensus
Probab=89.30 E-value=44 Score=38.18 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=109.2
Q ss_pred cccccccceeeeee---ccceEEeecCCCceEEEecC----CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE
Q psy8875 468 CKAAEGHASLLFAR---KHDIRKISLDHHEMTAIVNS----TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV 540 (734)
Q Consensus 468 C~~~~~~~~l~~~~---~~~I~~i~l~~~~~~~l~~~----~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~ 540 (734)
|.++.+.+.++... +..|+++..++......+.. +.....+.+....+++|+.......+..+.+...+..+.
T Consensus 387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred eeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 55555555444322 45677777666222222221 223334444444677777765666677777765444332
Q ss_pred EE--e-CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEe-CCCCeEEEEecCCCceEE
Q psy8875 541 VI--E-EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALN-PIDGWMYWSDWGQNAKIE 616 (734)
Q Consensus 541 ~~--~-~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD-~~~g~LYwtd~~~~~~I~ 616 (734)
.- . .......-|++-+.++.|-+++ ..+.|++.++.+...+.++..--...++.++. +.+++|-+++. +.+++
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats--~nQv~ 543 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATS--NNQVF 543 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEec--CCeEE
Confidence 21 1 1233455788887777777776 56899999999877666552222444566666 45667777764 35666
Q ss_pred EeccCCCceE--------EE---EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 617 RAGMDGSHRN--------MV---IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 617 ~~~ldG~~~~--------~l---v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
-.++...+.. .+ .......-.|+.+|+.+...+|.-. .+-+..++.++
T Consensus 544 efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~~ 602 (691)
T KOG2048|consen 544 EFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFSL 602 (691)
T ss_pred EEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecCC
Confidence 6666322211 01 1112334468999988877777743 34555555554
No 223
>KOG0772|consensus
Probab=89.19 E-value=30 Score=38.23 Aligned_cols=160 Identities=12% Similarity=0.124 Sum_probs=86.8
Q ss_pred EEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCC----CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEED----KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~----~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....|+|.+...|.+-...+.++..+++.... .+++.... -..|..-|.+. .++++.+--..+.|...++.+..
T Consensus 272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred eccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcc
Confidence 34468898999999887777766666653322 33333211 12344556663 35566665667888888774433
Q ss_pred eEE--EEc---CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce----------------------EEEEEcCC
Q psy8875 581 RKV--LVR---SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR----------------------NMVIVSDI 633 (734)
Q Consensus 581 ~~~--l~~---~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~----------------------~~lv~~~l 633 (734)
.+. .+. ........|++.+..++| .+- +....+..-+|.-.+. ..|+.+..
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSR-g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYL-LSR-GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchh-hhc-cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence 322 121 223356788887654433 222 2222333333322211 12233344
Q ss_pred CCceeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEE
Q psy8875 634 KWPNGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~ 672 (734)
..|++.+ .+.|||-|. ....|+++++++.....++
T Consensus 429 S~~~~~~----~g~L~f~d~~t~d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 429 SAPNGMT----AGTLFFFDRMTLDTVYKIDISTASVVRCL 464 (641)
T ss_pred cccCCCC----CceEEEEeccceeeEEEecCCCceEEEEe
Confidence 4566654 457888875 4568899998866555444
No 224
>KOG0319|consensus
Probab=89.16 E-value=17 Score=41.67 Aligned_cols=179 Identities=9% Similarity=0.007 Sum_probs=99.0
Q ss_pred eeccceEEeecCCCceE-EEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeee
Q psy8875 480 ARKHDIRKISLDHHEMT-AIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVD 555 (734)
Q Consensus 480 ~~~~~I~~i~l~~~~~~-~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD 555 (734)
.....|..+++...... ... .......++++.+.+..||.+- ..+.|....+..|... ..... .-.....+|+|
T Consensus 37 ~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~-He~Pvi~ma~~ 114 (775)
T KOG0319|consen 37 ACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAI-HEAPVITMAFD 114 (775)
T ss_pred ecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhc-cCCCeEEEEEc
Confidence 34455666666544432 111 1344667888888777776653 4455666677755321 11110 12234578999
Q ss_pred ccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCe-EEEEecCCCceEEEeccCCCce-EEEEEcCC
Q psy8875 556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW-MYWSDWGQNAKIERAGMDGSHR-NMVIVSDI 633 (734)
Q Consensus 556 ~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~-LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l 633 (734)
+.+ .|.-+-...++|.+.++.+.+...-+.+...-...|.+.|.-.+ |..+. ...+.+...++.-... ..+.....
T Consensus 115 ~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg-~~D~~v~vwnl~~~~tcl~~~~~H~ 192 (775)
T KOG0319|consen 115 PTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG-ATDGTVRVWNLNDKRTCLHTMILHK 192 (775)
T ss_pred CCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeec-CCCceEEEEEcccCchHHHHHHhhh
Confidence 665 66666666889999999999888777665555667777765443 11111 2235666665542211 11112234
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
....+|++-.....| ++-.....|...++
T Consensus 193 S~vtsL~~~~d~~~~-ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLEL-LSVGRDKVIIVWDL 221 (775)
T ss_pred hheeeeeeccCCceE-EEeccCcEEEEeeh
Confidence 456778876443333 33334455666665
No 225
>KOG3914|consensus
Probab=89.13 E-value=10 Score=40.35 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=95.1
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCce-EEE--EcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccC-CCceEEEEEc
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMR-KVL--VRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMD-GSHRNMVIVS 631 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~-~~l--~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ld-G~~~~~lv~~ 631 (734)
..+.|+.++.. .++.++.++++.+ ..+ ....-..|++|.+....-++-++|.. ....+.....+ |..+.++ .
T Consensus 73 ~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l--G 149 (390)
T KOG3914|consen 73 SGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL--G 149 (390)
T ss_pred CceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh--h
Confidence 44555666553 4444444444332 111 11234578888888777777777742 22333333333 5444433 4
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE-EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR-LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~-~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.+..-..++|.+....|.-+|. ..+|+...+.+.... .+..+ +-..-..|++..+++.|+-.+.+.|+.-+..+|+
T Consensus 150 hvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclG--H~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLG--HKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccc--cHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 4555678889887888887774 467888888776432 22211 1223457899999999999999999999999999
Q ss_pred ceEEE
Q psy8875 711 NLTAI 715 (734)
Q Consensus 711 ~~~~l 715 (734)
.+..+
T Consensus 227 ~L~t~ 231 (390)
T KOG3914|consen 227 LLDTC 231 (390)
T ss_pred ccccc
Confidence 87665
No 226
>KOG1274|consensus
Probab=89.13 E-value=36 Score=40.28 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=87.2
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCC-CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEG-SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g-~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
-..|.|++....|+..+ .++.|.+..-... ...+.+-. ......+||.+ .+.|.+-+..+.|.++.++......
T Consensus 16 ~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred eEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhc-cCceeEEEeec---ccceEEeeccceEEEeeCCCCCccc
Confidence 45678888888777765 3455555543322 12222211 12234566665 3467777778999999987766665
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
|+..-....+.++|+.. |.+-... +..-.|...++ |++..+++ ...-....+|.+|+.+..|-++. ..+.|..++
T Consensus 91 iL~Rftlp~r~~~v~g~-g~~iaag-sdD~~vK~~~~~D~s~~~~l-rgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~ 166 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGS-GKMIAAG-SDDTAVKLLNLDDSSQEKVL-RGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWD 166 (933)
T ss_pred eeeeeeccceEEEEecC-CcEEEee-cCceeEEEEeccccchheee-cccCCceeeeeEcCCCCEEEEEe-cCceEEEEE
Confidence 66444446688999854 4444333 23356666666 44444443 22223345777776555554444 456777777
Q ss_pred cCC
Q psy8875 663 YNG 665 (734)
Q Consensus 663 ~dG 665 (734)
++.
T Consensus 167 ~~~ 169 (933)
T KOG1274|consen 167 LQD 169 (933)
T ss_pred ccc
Confidence 653
No 227
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.72 E-value=30 Score=35.33 Aligned_cols=178 Identities=16% Similarity=0.125 Sum_probs=92.3
Q ss_pred cCCeEEEEEeCCC-cEEEEec------CCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE-EE
Q psy8875 513 RTGMIFWSDISEK-KIYKAPI------DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK-VL 584 (734)
Q Consensus 513 ~~~~lyw~d~~~~-~I~~~~l------~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~-~l 584 (734)
..+++||++...+ .|+.... .+...++..++.. ..-.|-.| -++.||+--..+..|.+.+|..+... ..
T Consensus 29 ~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~-~~GtG~vV--YngslYY~~~~s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 29 DSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYP-WQGTGHVV--YNGSLYYNKYNSRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEece-eccCCeEE--ECCcEEEEecCCceEEEEECcCCcEEEEE
Confidence 3678888876543 3433321 1111233333322 22334555 37999999999999999999876654 22
Q ss_pred -EcC-C----------CCCceeEEEeCCCCe--EEEEecCCCceEEEeccCCCceEEE--EEcCCCCc---eeEEEecCC
Q psy8875 585 -VRS-Y----------LDEPRSLALNPIDGW--MYWSDWGQNAKIERAGMDGSHRNMV--IVSDIKWP---NGLTLDLVQ 645 (734)
Q Consensus 585 -~~~-~----------l~~P~~iavD~~~g~--LYwtd~~~~~~I~~~~ldG~~~~~l--v~~~l~~P---~glavD~~~ 645 (734)
+.. . ...-..+|||. +|. ||-+. ...+.|..+.+|-....+. ....+..+ +++- .=
T Consensus 106 ~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~-~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFm---vC 180 (250)
T PF02191_consen 106 ELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATE-DNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFM---VC 180 (250)
T ss_pred ECCccccccccceecCCCceEEEEEcC-CCEEEEEecC-CCCCcEEEEeeCcccCceEEEEEeccCchhhcceee---Ee
Confidence 211 1 12235899995 553 33333 3345687777775544332 22333333 2333 36
Q ss_pred CeEEEEeCCC---CeEE-EEecC-CCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCC
Q psy8875 646 RRLYWVDAKL---NEIS-SCDYN-GGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQ 698 (734)
Q Consensus 646 ~~LYw~D~~~---~~I~-~~~~d-G~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~ 698 (734)
|.||.++... .+|. .+|+. ++...+-+.-.........|.. .+.+||.=|-+.
T Consensus 181 GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 181 GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECCe
Confidence 8999998654 3343 33433 2222222211122223334555 478888866543
No 228
>KOG0270|consensus
Probab=88.33 E-value=37 Score=36.81 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=102.9
Q ss_pred eEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC--CceEEEEeCCCCCccceeeeccCCcE
Q psy8875 485 IRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG--SERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 485 I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g--~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
|..=+++..+...+++ ..+.+..++|++.+..+..+....+++...+...- ......+. ...+-+++++..-+.
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSENS 344 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCcee
Confidence 3333454444433333 56778899999988888888777777776665421 12333332 356778888888888
Q ss_pred EEEeCCCCeEEEEeCCC--CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCce
Q psy8875 562 YWTDAHKNTIELANFEG--TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPN 637 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG--~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~ 637 (734)
|+.....++++-+++.. .-..++. ..-....+|.+....-.|..|... ...+...++++...+.+... ++..-.
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~-d~~Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTAST-DKVVKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccc-cceEEEEeecCCCCccccccccccccee
Confidence 88887778888777643 2222232 233467889998887777777633 34454555555554433322 233344
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
-++.++....+|..-...+.+...+
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ecccCCCcceEEEecCccceEEEee
Confidence 5566666666665554444444444
No 229
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.32 E-value=41 Score=35.25 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=123.4
Q ss_pred eeeeeec--cceEEeecCCCceEEEec-C-CcceEE-EeeeccCCeEEEEEe----CCCcEEEEecCCCCceEEEEeCCC
Q psy8875 476 SLLFARK--HDIRKISLDHHEMTAIVN-S-TKSATA-IDFVFRTGMIFWSDI----SEKKIYKAPIDEGSERTVVIEEDK 546 (734)
Q Consensus 476 ~l~~~~~--~~I~~i~l~~~~~~~l~~-~-~~~~~~-i~~d~~~~~lyw~d~----~~~~I~~~~l~~g~~~~~~~~~~~ 546 (734)
.+.|+.+ .....++..+......+. . ...-.| -.|++....||-++. ..+.|-..+...+..+.--+...-
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G 98 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG 98 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence 4555554 234455554444333322 1 122222 235556777777743 345677777663443333344444
Q ss_pred CCccceeeeccCCcEEEEeCCC-----------------CeEEEE-eCCCCceEEE-Ec--CCCCCceeEEEeCCCCeEE
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHK-----------------NTIELA-NFEGTMRKVL-VR--SYLDEPRSLALNPIDGWMY 605 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~-----------------~~I~~~-~ldG~~~~~l-~~--~~l~~P~~iavD~~~g~LY 605 (734)
-.|.-|.+.+.+..|.+++.+- ..|... ..+|...... +. ......+.||++.. |.+.
T Consensus 99 IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~ 177 (305)
T PF07433_consen 99 IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVA 177 (305)
T ss_pred cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC-CcEE
Confidence 5688888888777888886541 112222 2233332221 11 12236789999974 6666
Q ss_pred EEe-cC-----CCceEEEeccCCCceEEEEEc----C-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC
Q psy8875 606 WSD-WG-----QNAKIERAGMDGSHRNMVIVS----D-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS 674 (734)
Q Consensus 606 wtd-~~-----~~~~I~~~~ldG~~~~~lv~~----~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~ 674 (734)
+.. +. ..+-|.....++..+..-... . -.+--.|+++...+.|..+-...+.+...+.........
T Consensus 178 ~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~--- 254 (305)
T PF07433_consen 178 FAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS--- 254 (305)
T ss_pred EEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec---
Confidence 654 21 123444444443322111111 1 134567999877788889988888988875443332222
Q ss_pred CCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875 675 PQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 675 ~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
..+..--||+...+. |+...+.+.|+++.....+
T Consensus 255 -~~l~D~cGva~~~~~-f~~ssG~G~~~~~~~~~~~ 288 (305)
T PF07433_consen 255 -VPLPDACGVAPTDDG-FLVSSGQGQLIRLSPDGPQ 288 (305)
T ss_pred -cccCceeeeeecCCc-eEEeCCCccEEEccCcccc
Confidence 235667788886666 5555666888877654443
No 230
>KOG1273|consensus
Probab=86.67 E-value=43 Score=34.82 Aligned_cols=207 Identities=10% Similarity=0.078 Sum_probs=112.7
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+..|.|.. .++...+......|...++..|+....+ +. ....+..+.+..++..++-.....-.+..++...
T Consensus 65 ~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 65 VRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred ccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 44567788985 5666677777788888888767653322 22 2245667777788888776655545555555433
Q ss_pred eEEEEcCC---C-CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---CCCceeEEEecCCCeEEEEeC
Q psy8875 581 RKVLVRSY---L-DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---IKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 581 ~~~l~~~~---l-~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---l~~P~glavD~~~~~LYw~D~ 653 (734)
.++|.... + ..+.-...|+...+||.-. ..++|...+.+... .+.+-+ ...-..|.+. ..++.+.+..
T Consensus 141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt--sKGkllv~~a~t~e--~vas~rits~~~IK~I~~s-~~g~~liiNt 215 (405)
T KOG1273|consen 141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGT--SKGKLLVYDAETLE--CVASFRITSVQAIKQIIVS-RKGRFLIINT 215 (405)
T ss_pred eeeccCCCccccccccccccccCCCCEEEEec--CcceEEEEecchhe--eeeeeeechheeeeEEEEe-ccCcEEEEec
Confidence 33443221 1 2334446777666666554 24777777665432 222111 2334456664 5666667776
Q ss_pred CCCeEEEEecC-----CCceEEEE--c---CCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875 654 KLNEISSCDYN-----GGNRRLVL--Y---SPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 654 ~~~~I~~~~~d-----G~~~~~i~--~---~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
....|..+++. |+...+-. . .-..+++- .+-+ .+.+|.-+....++||.--+..|..+++|-++
T Consensus 216 sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk-~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 216 SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK-KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh-heeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence 66677776643 22211110 0 00011111 1222 34455555566667777777777777777543
No 231
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=86.62 E-value=0.16 Score=48.01 Aligned_cols=86 Identities=26% Similarity=0.550 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcCccccC---CCcceeecCCCcEecCCCCcccccc--CcCCCCCc--ccceeccC
Q psy8875 375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDL---PVGYMCECNEGYKLSSNRHTCIDID--ECETPGSC--SQICLNEK 447 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~---~~~~~C~C~~G~~l~~~~~~C~~~~--eC~~~~~C--~~~C~n~~ 447 (734)
+|..||......|-.++|.....+ +..|+-. +....|+|.-|+.+. ++..|.-.. +|+. .| .++|....
T Consensus 73 ~C~~gY~~~~~vCvp~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~-dn~kCtk~G~T~C~L--KCk~nE~CK~~~ 148 (197)
T PF06247_consen 73 DCINGYILKQGVCVPNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPD-DNKKCTKTGETKCSL--KCKENEECKLVD 148 (197)
T ss_dssp EE-TTEEESSSSEEEGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETT-TTTESEEEE----------TTTEEEEEET
T ss_pred ecccCceeeCCeEchhhcCceecC-CCeEEecCCCCCCceeEeeeceEec-cCCcccCCCccceee--ecCCCcceeeeC
Confidence 455555433334444444432222 2355543 345699999999843 677775332 2321 23 24788889
Q ss_pred CceEEecCCCeeeCCCC
Q psy8875 448 GGFKCECVAGYIKDPHH 464 (734)
Q Consensus 448 g~~~C~C~~gy~~~~~~ 464 (734)
+-|+|.|.+|+.++..+
T Consensus 149 ~~Y~C~~~~~~~~~~~~ 165 (197)
T PF06247_consen 149 GYYKCVCKEGFPGDGEG 165 (197)
T ss_dssp TEEEEEE-TT-EEETTT
T ss_pred cEEEeecCCCCCCCCCc
Confidence 99999999999887543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=86.39 E-value=34 Score=33.40 Aligned_cols=121 Identities=7% Similarity=0.042 Sum_probs=68.9
Q ss_pred cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC-CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE
Q psy8875 526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA-HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM 604 (734)
Q Consensus 526 ~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~-~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L 604 (734)
.|++++..+.....+.+. .-..+..++..|.+..+.+... ...+|...++.+.....+. -...+.|...|...+|
T Consensus 40 ~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec---CCCceEEEECCCCCEE
Confidence 456665553322222222 1223667777777777665543 2457888888755444332 2345679999988788
Q ss_pred EEEecCC-CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 605 YWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 605 Ywtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
..+..+. .+.|...+++ ..+.+..........+++++.+.+|..+.
T Consensus 116 ~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEEccCCCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 7776543 3567776665 34444433334456777776666655444
No 233
>KOG0268|consensus
Probab=86.34 E-value=17 Score=38.37 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred cceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 483 HDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 483 ~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
..|+.-++...+ ...+.....-+.||.++. +..++..| .+.|.+..+++ ....+++. -....||.-.| ...+
T Consensus 89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~-~p~~tilg--~s~~~gIdh~~-~~~~ 161 (433)
T KOG0268|consen 89 GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDG-PPLHTILG--KSVYLGIDHHR-KNSV 161 (433)
T ss_pred ceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccC-Ccceeeec--ccccccccccc-cccc
Confidence 344444554332 223333444567777774 44555544 45566655553 22222222 22344555443 2445
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEEcCCCCceeEE
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~~~l~~P~gla 640 (734)
|.|-. ..|...+..-.....-+.-+......+...|..-.|.-+- +....|...++-- +..+.++. + ..+|+|+
T Consensus 162 FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-~sDrsIvLyD~R~~~Pl~KVi~-~-mRTN~Is 236 (433)
T KOG0268|consen 162 FATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-ASDRSIVLYDLRQASPLKKVIL-T-MRTNTIC 236 (433)
T ss_pred ccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeee-ccCCceEEEecccCCccceeee-e-cccccee
Confidence 55433 2344444332222111111222334455555544444443 2235565555532 22222221 2 2488999
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
+.| +...|++-.....|+.+++.-
T Consensus 237 wnP-eafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 237 WNP-EAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred cCc-cccceeeccccccceehhhhh
Confidence 998 888888877777788777543
No 234
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.15 E-value=43 Score=34.29 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=107.3
Q ss_pred ceEEEeeeccCCeEEEEE--eCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE--eCCCC
Q psy8875 504 SATAIDFVFRTGMIFWSD--ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA--NFEGT 579 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d--~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~--~ldG~ 579 (734)
.+...++.+..+.+.++. .....++....+ +....++... .....++|.. +.++..+......... ..+|.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g~---~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTGG---SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccCC---ccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 345556665566666655 445567776655 3333333222 3445577755 7777777654443333 23455
Q ss_pred ceEEEEc-CCCC-CceeEEEeCCCCeEE-EEecCCCceEEEecc--CCCc-eEEE------EEcCCCCceeEEEecCCCe
Q psy8875 580 MRKVLVR-SYLD-EPRSLALNPIDGWMY-WSDWGQNAKIERAGM--DGSH-RNMV------IVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 580 ~~~~l~~-~~l~-~P~~iavD~~~g~LY-wtd~~~~~~I~~~~l--dG~~-~~~l------v~~~l~~P~glavD~~~~~ 647 (734)
...+.+. ..+. ....|.|.|..-+|- +...+...+|+.+.. ++.. ...+ ....+..+..+++-.....
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 5444443 2232 678999998876654 443333466766643 2222 1111 1122334556777533444
Q ss_pred EEEEeCCCCeEEE-EecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 648 LYWVDAKLNEISS-CDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 648 LYw~D~~~~~I~~-~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
++.+......+.. +..+|.....+... ....| .+++ ....+|.++.+ .|++ ...|...+.+..
T Consensus 180 ~V~~~~~~~~~~~~v~~dG~~~~~l~~~--~~~~~-v~a~~~~~~~~~~t~~~--~~~~--~~~~~~W~~v~~ 245 (253)
T PF10647_consen 180 VVLGRSAGGPVVRLVSVDGGPSTPLPSV--NLGVP-VVAVAASPSTVYVTDDG--GVLQ--SRSGASWREVPG 245 (253)
T ss_pred EEEeCCCCCceeEEEEccCCcccccCCC--CCCcc-eEEeeCCCcEEEEECCC--cEEE--CCCCCcceEccC
Confidence 4444444444555 77888877766321 12222 3333 56678888754 5665 456666665543
No 235
>KOG0310|consensus
Probab=86.09 E-value=23 Score=38.77 Aligned_cols=149 Identities=7% Similarity=0.013 Sum_probs=87.4
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 558 YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 558 ~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
.|+|+.+--..+.|.++++..+.....+........-+-+.|..+.++.+-. ....+...++++.....-+.....+.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s-Dd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS-DDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC-CCceEEEEEcCCcEEEEEecCCcceeE
Confidence 4777777777888988885542211111222333345556667777777752 233444444554443323344455677
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeE--EEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFS--ISTFEDWLYWSDWQQKAIYKANKFTGDN 711 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~g--l~v~~~~lywtd~~~~~v~~~~~~~G~~ 711 (734)
.+++-+.++.|+++-+..+.|...+......++ +. -.-..|.. |++..+.++.+-.+ +.|...+..+|..
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-~e--lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q 229 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-VE--LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ 229 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCcee-EE--ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce
Confidence 888888899999999999999888866553222 22 11345543 34456677776655 4566666665543
No 236
>KOG4283|consensus
Probab=85.97 E-value=45 Score=34.35 Aligned_cols=210 Identities=10% Similarity=0.052 Sum_probs=96.0
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--eEEEEeC-----CCCCcc-------ceeeeccCCcEEEEeC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--RTVVIEE-----DKTIAD-------GLAVDWIYSHIYWTDA 566 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~~~~~~~-----~~~~p~-------glAvD~~~~~lY~td~ 566 (734)
....+.+|.+|+.++++.++...++.|...++...+. ..-++.. ....+. .+---|...-+|.+.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 3456778899998999888888889998888875432 1111110 011111 1111122233555555
Q ss_pred CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC
Q psy8875 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV 644 (734)
Q Consensus 567 ~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~ 644 (734)
..+.+.|.+.+..+..+.+.-. .....-|..|. ..-|.-+.. ...+|...+|....-...++..-....++.+.+.
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gt-r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGT-RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEec-CCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 5666666666655444333110 00001111111 111222211 2345666666433333334333333444445555
Q ss_pred CCeEEEEeCCCCeEEEEecC---CC---------ceEEEEc-CCCCCCCCeEEEEEC-CEEEEEeCCCCceEEEeccCCC
Q psy8875 645 QRRLYWVDAKLNEISSCDYN---GG---------NRRLVLY-SPQTLSHPFSISTFE-DWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~d---G~---------~~~~i~~-~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.+.|..+-+..++|..-++. |. .+..++. .......-+|++... +.-.|+-....++...+..+|.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 56665555544544433321 21 1111221 112223346777743 3333444444556556666666
Q ss_pred ce
Q psy8875 711 NL 712 (734)
Q Consensus 711 ~~ 712 (734)
+.
T Consensus 280 nt 281 (397)
T KOG4283|consen 280 NT 281 (397)
T ss_pred cc
Confidence 53
No 237
>KOG1539|consensus
Probab=85.70 E-value=69 Score=37.65 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=82.6
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.....+++++.-.+.. +.....+.|-++++..|-.+..... ..-....|||+|-.+ ++.++-...+-+...++..+
T Consensus 448 ~~~~~av~vs~CGNF~-~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFV-FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred CcceEEEEEeccCceE-EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCc
Confidence 3467788888655544 4556788899999987655444421 123457899999554 44555444677777777665
Q ss_pred ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
....-+ .-...+.+|...-..+ |+.+... .-+|...++--......+.+....-+.+++.+.++.|..+. ...+|.
T Consensus 526 ~l~~~l-~l~~~~~~iv~hr~s~-l~a~~~d-df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr 601 (910)
T KOG1539|consen 526 VLKKSL-RLGSSITGIVYHRVSD-LLAIALD-DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIR 601 (910)
T ss_pred ceeeee-ccCCCcceeeeeehhh-hhhhhcC-ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEE
Confidence 422111 1111223333322222 1211111 23444444321110001112234567889987777766665 346788
Q ss_pred EEecCC
Q psy8875 660 SCDYNG 665 (734)
Q Consensus 660 ~~~~dG 665 (734)
..|+-.
T Consensus 602 ~wDlpt 607 (910)
T KOG1539|consen 602 TWDLPT 607 (910)
T ss_pred EEeccC
Confidence 877543
No 238
>KOG0282|consensus
Probab=85.44 E-value=16 Score=39.93 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=97.9
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
+.++.|.. .+.-|.+-.....|.-.+...|..... +. .-..|.-+.+.+.+.++|++-...++|...++......--
T Consensus 261 Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~-f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 261 VRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSR-FH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhhhccc-cCCeeeeeecceeeeeeccccceEEEE-Ee-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 34455543 344445544455565555554432222 22 2235677777777789999998899999988754431111
Q ss_pred EcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 585 VRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 585 ~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
+...|.....|.+=+ .|+-|++.... .-+||-....-.. +.++... ...| .|++- .++..+.+.+..+.|..+.
T Consensus 338 Yd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~i-k~i~~~~~hsmP-~~~~~-P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPI-KNIADPEMHTMP-CLTLH-PNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccc-hhhcchhhccCc-ceecC-CCCCeehhhccCceEEEEe
Confidence 224566666777754 34555554322 2244433222111 1111112 2223 46664 5666667777777766655
Q ss_pred cCC---CceEEEEcCCCCCCC-------CeEEEE----ECCEEEEEeCCCCceEEE
Q psy8875 663 YNG---GNRRLVLYSPQTLSH-------PFSIST----FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 663 ~dG---~~~~~i~~~~~~~~~-------P~gl~v----~~~~lywtd~~~~~v~~~ 704 (734)
..- .+++....+...-+. |.|=.+ .+|++|+=||++-++++.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc
Confidence 332 222222222111222 332222 256777778877665543
No 239
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=85.12 E-value=0.99 Score=42.86 Aligned_cols=59 Identities=34% Similarity=0.924 Sum_probs=41.6
Q ss_pred ccCCCcceeecCCCcEecCCCCccccccCcCC----CCCcc--cceeccC-----CceEEecCCCeeeCCC
Q psy8875 404 VDLPVGYMCECNEGYKLSSNRHTCIDIDECET----PGSCS--QICLNEK-----GGFKCECVAGYIKDPH 463 (734)
Q Consensus 404 ~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~----~~~C~--~~C~n~~-----g~~~C~C~~gy~~~~~ 463 (734)
..+.+.|+|.|.+||.|. +..+|+...+|.. .-+|. .+|++.. ..|+|.|.+||.+...
T Consensus 14 iQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~ 83 (197)
T PF06247_consen 14 IQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG 83 (197)
T ss_dssp EEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS
T ss_pred EEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC
Confidence 445688999999999998 7789998888854 24564 3787776 4799999999999754
No 240
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.88 E-value=3.9 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875 644 VQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 644 ~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v 686 (734)
.+++||+++...+.|..++........-+ ....+|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i---~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI---PVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE---ECCCCCceEEe
Confidence 57899999999999999987543322222 22467888875
No 241
>KOG0276|consensus
Probab=84.74 E-value=78 Score=36.04 Aligned_cols=125 Identities=6% Similarity=-0.001 Sum_probs=76.1
Q ss_pred cccceeee-eeccceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 472 EGHASLLF-ARKHDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 472 ~~~~~l~~-~~~~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
.....++. +++..||.+..+..+. ..+-.....+..|+++|..- .+.+....-.|...+.+++...+..+.+--..+
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV 143 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV 143 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEE
Confidence 33334444 4567788888775543 33444566788999997433 333444455666666664444444444444455
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEE
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLAL 597 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iav 597 (734)
-.||+.|...+-|.+-+-.++|.+.++.......-+.+.....+-+-.
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence 679999999999998888888888887655544333333333444433
No 242
>KOG4441|consensus
Probab=84.13 E-value=69 Score=37.16 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=92.3
Q ss_pred ceeeeccCCcEEEEeCCC------CeEEEEeCCCCceEEEEcCCCCCce-eEEEeCCCCeEEEEecC----CCceEEEec
Q psy8875 551 GLAVDWIYSHIYWTDAHK------NTIELANFEGTMRKVLVRSYLDEPR-SLALNPIDGWMYWSDWG----QNAKIERAG 619 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~------~~I~~~~ldG~~~~~l~~~~l~~P~-~iavD~~~g~LYwtd~~----~~~~I~~~~ 619 (734)
++++ .++.||++-... ..+++.+.....-..+ ..+..+| ++++-...|.||..--. ....|++.+
T Consensus 327 ~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~--a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 327 GVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV--APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred cEEE--ECCEEEEEccccCCCcccceEEEecCCCCceecc--CCccCccccceeEEECCEEEEEeccccccccccEEEec
Confidence 4454 578999985543 4678888776664432 3444443 44455578999998621 224688888
Q ss_pred cCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEE
Q psy8875 620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYW 693 (734)
Q Consensus 620 ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lyw 693 (734)
.....-..+.. ....-.+.++-..+++||.+-. ....+++++.....=+.+..- .....-+++++.+++||+
T Consensus 403 p~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-~~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 403 PVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-NTRRSGFGVAVLNGKIYV 480 (571)
T ss_pred CCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-ccccccceEEEECCEEEE
Confidence 77654443321 1112234445457999999954 336788888766554444321 222344678999999999
Q ss_pred EeCCC-----CceEEEeccCCC
Q psy8875 694 SDWQQ-----KAIYKANKFTGD 710 (734)
Q Consensus 694 td~~~-----~~v~~~~~~~G~ 710 (734)
.-... .+|.+.++.+.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ECCccCCCccceEEEEcCCCCc
Confidence 85432 235666665444
No 243
>KOG0303|consensus
Probab=83.74 E-value=53 Score=35.23 Aligned_cols=161 Identities=8% Similarity=0.105 Sum_probs=88.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
..++.--|+|++....+..+......|+.-+...|.. .+..........+.+. ..|.++.|-....+|++.+.....
T Consensus 130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLDHPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred cceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecCCCCeEEEEEec-cCCceeeeecccceeEEEcCCCCc
Confidence 3445556788887777777777777787777764432 2211123344566666 346777787778889998875332
Q ss_pred eE-EE-EcCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCceEEEEEcCCCCceeEE---EecCCCeEEEEeC
Q psy8875 581 RK-VL-VRSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSHRNMVIVSDIKWPNGLT---LDLVQRRLYWVDA 653 (734)
Q Consensus 581 ~~-~l-~~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~~~~lv~~~l~~P~gla---vD~~~~~LYw~D~ 653 (734)
.. .- ...+...++.|-+ .+|.|+-|-.+.. ..|..-+.+.- .+.+....+..-+|+- .|+.++.||.+--
T Consensus 207 ~v~e~~~heG~k~~Raifl--~~g~i~tTGfsr~seRq~aLwdp~nl-~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFL--ASGKIFTTGFSRMSERQIALWDPNNL-EEPIALQELDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred EeeecccccCCCcceeEEe--ccCceeeeccccccccceeccCcccc-cCcceeEEeccCCceEEeeecCCCCEEEEEec
Confidence 21 11 1234455666666 4556555543221 11211111111 1112223344445554 3667788888877
Q ss_pred CCCeEEEEecCCCc
Q psy8875 654 KLNEISSCDYNGGN 667 (734)
Q Consensus 654 ~~~~I~~~~~dG~~ 667 (734)
+.+.|..+.+....
T Consensus 284 GD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 284 GDSSIRYFEITNEP 297 (472)
T ss_pred CCcceEEEEecCCC
Confidence 77777777765443
No 244
>PRK10115 protease 2; Provisional
Probab=83.24 E-value=1.1e+02 Score=36.49 Aligned_cols=194 Identities=10% Similarity=0.070 Sum_probs=93.4
Q ss_pred eEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-----CCeEEEEe
Q psy8875 505 ATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-----KNTIELAN 575 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-----~~~I~~~~ 575 (734)
..++.+.+..+.|.++-...+ .|+.+++.+|......+. ... .+++..+.++.||++-.. ...|++.+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Ccc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 345566666666666532222 467777765432111111 111 234443344567666332 25788888
Q ss_pred CCCC--ceEEEEcCCCCCcee--EEEeCCCCeEEEEecC-CCceEEEecc---CCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 576 FEGT--MRKVLVRSYLDEPRS--LALNPIDGWMYWSDWG-QNAKIERAGM---DGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 576 ldG~--~~~~l~~~~l~~P~~--iavD~~~g~LYwtd~~-~~~~I~~~~l---dG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
+... ..+.|+... ..+.. +.......+|++.-.. ..+.++.... ++.. +.++......- ..+...++.
T Consensus 206 lgt~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHE--YSLDHYQHR 281 (686)
T ss_pred CCCChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCE--EEEEeCCCE
Confidence 8665 333444322 22222 2222234445433322 2234554442 3332 22332222211 233345678
Q ss_pred EEEEeC---CCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEec
Q psy8875 648 LYWVDA---KLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANK 706 (734)
Q Consensus 648 LYw~D~---~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~ 706 (734)
||+... .+.+|.++++... .-++++... .-....+++++.++|+++-.. ..+|+.++.
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLFTDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEECCEEEEEEEeCCEEEEEEEcC
Confidence 887753 4457888887743 334555421 122345778888988887543 344555554
No 245
>KOG0286|consensus
Probab=83.17 E-value=60 Score=33.49 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=81.4
Q ss_pred CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC
Q psy8875 523 SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG 602 (734)
Q Consensus 523 ~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g 602 (734)
+.....--++..|. ....+..-...+-+|+|-+.+.+.|++-.-.......++........+.+.-...+++.+.| .|
T Consensus 164 GD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G 241 (343)
T KOG0286|consen 164 GDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SG 241 (343)
T ss_pred CCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CC
Confidence 33344444454333 23333334556677888877899999988777777777754444444556667788999987 57
Q ss_pred eEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 603 WMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 603 ~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
.-|.|-. ..+.....++-......+.+. .+.-.+++++. ..|||.++-.....+.+-+
T Consensus 242 ~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 242 DAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred CeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEee
Confidence 7777763 234555555543322223322 23345778886 5667777755555566555
No 246
>KOG0281|consensus
Probab=83.11 E-value=8.4 Score=40.19 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=93.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+..-+.|+ +++.++......|..-+.+.|....+++. --..+-+|.+ ++.+.+|-+....|.+.+|+...
T Consensus 236 HtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 236 HTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred CCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEE---eCCEEEEecCCceeEEEeccCch
Confidence 34566778887 34777777777888888876665444443 2233445554 35667787888899999887643
Q ss_pred ----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 581 ----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 581 ----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
+++|+ +.....+.+.+| .++.++..+ ...|.+-+++...- +..--.+-.|||--...++|.++-+..+
T Consensus 309 ~it~rrVLv-GHrAaVNvVdfd---~kyIVsASg-DRTikvW~~st~ef---vRtl~gHkRGIAClQYr~rlvVSGSSDn 380 (499)
T KOG0281|consen 309 DITLRRVLV-GHRAAVNVVDFD---DKYIVSASG-DRTIKVWSTSTCEF---VRTLNGHKRGIACLQYRDRLVVSGSSDN 380 (499)
T ss_pred HHHHHHHHh-hhhhheeeeccc---cceEEEecC-CceEEEEeccceee---ehhhhcccccceehhccCeEEEecCCCc
Confidence 22333 444444444444 234444433 46676666654322 2222345689998888999999988888
Q ss_pred eEEEEecCC
Q psy8875 657 EISSCDYNG 665 (734)
Q Consensus 657 ~I~~~~~dG 665 (734)
.|...++.-
T Consensus 381 tIRlwdi~~ 389 (499)
T KOG0281|consen 381 TIRLWDIEC 389 (499)
T ss_pred eEEEEeccc
Confidence 888877653
No 247
>KOG2111|consensus
Probab=83.04 E-value=63 Score=33.68 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=82.4
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeE-EEeCCCCeEEEEecC-CCceEEEeccCCCce--EEEEEcCC
Q psy8875 558 YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSL-ALNPIDGWMYWSDWG-QNAKIERAGMDGSHR--NMVIVSDI 633 (734)
Q Consensus 558 ~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~i-avD~~~g~LYwtd~~-~~~~I~~~~ldG~~~--~~lv~~~l 633 (734)
..+|.++-. ++|++..+....+..-......+|+|+ ++.|..+..+.+=.| ..++|...++.-... ..++....
T Consensus 104 r~riVvvl~--~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~ 181 (346)
T KOG2111|consen 104 RDRIVVVLE--NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD 181 (346)
T ss_pred CCeEEEEec--CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence 344444443 677787776544444333566778886 456666666666544 347788887765544 24444333
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEe--cCCCceEEEEcCCCCCCCCeEEEEECCEEEEE-eCCCCceEEEec
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCD--YNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS-DWQQKAIYKANK 706 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~--~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt-d~~~~~v~~~~~ 706 (734)
..-.-++|. ..|.|.-+-+..+++.|+- .+|+....+-.+. .-.+-+.|++..+..|.+ ...++.|..+..
T Consensus 182 s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 182 SDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred CceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 333456665 4666766666677665553 5566666655432 233456788855544443 344555555543
No 248
>KOG0308|consensus
Probab=83.03 E-value=22 Score=40.36 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=90.7
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
.+.++|... ++.++++....+-|...+..... +...+.+--.+++.|-++..+..+. +-+..+.|.+.+|.-.....
T Consensus 173 siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 173 SIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred ceeeeecCC-cceEEEecCcccceEEecccccc-ceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceee
Confidence 556777764 55677766555656666655333 2233333455677788875555554 44557899999887554322
Q ss_pred --EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 584 --LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 584 --l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
++... ..-++..+|.-.++|..+. .+.|++.+|......+++-+.-+...-|.+....+-+ |+.+....|.+.
T Consensus 250 T~~vH~e--~VWaL~~~~sf~~vYsG~r--d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW 324 (735)
T KOG0308|consen 250 TYIVHKE--GVWALQSSPSFTHVYSGGR--DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRW 324 (735)
T ss_pred eEEeccC--ceEEEeeCCCcceEEecCC--CCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceec
Confidence 22222 3567888888888898873 5789999997744444443333333445554344444 766666666665
Q ss_pred ec
Q psy8875 662 DY 663 (734)
Q Consensus 662 ~~ 663 (734)
..
T Consensus 325 ~~ 326 (735)
T KOG0308|consen 325 KL 326 (735)
T ss_pred CC
Confidence 43
No 249
>KOG2106|consensus
Probab=83.00 E-value=82 Score=34.93 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=41.6
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ 575 (734)
...+..|+-. .+-||+- ...+.|..-++..+...++... .....|||..+ ..++|.|-...+.+...+
T Consensus 329 ~G~iRtv~e~--~~di~vG-TtrN~iL~Gt~~~~f~~~v~gh--~delwgla~hp-s~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 329 FGPIRTVAEG--KGDILVG-TTRNFILQGTLENGFTLTVQGH--GDELWGLATHP-SKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred cCCeeEEecC--CCcEEEe-eccceEEEeeecCCceEEEEec--ccceeeEEcCC-ChhheeeccCcceEEEcc
Confidence 3444555433 3335554 4566788888875554444433 33678999985 577888877666666555
No 250
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.77 E-value=27 Score=36.10 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 568 KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 568 ~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
..+|++..+-|...+. +. -+-=||+.....|||--|-..+.+++-.-+|+ +++....+..+.+..-++...=+
T Consensus 19 ~~~iY~felvG~~P~S----GG--DTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~-~~IdF~NKYSHVH~yd~e~~~Vr 91 (339)
T PF09910_consen 19 SEKIYRFELVGPPPTS----GG--DTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGR-ATIDFRNKYSHVHEYDTENDSVR 91 (339)
T ss_pred ceEEEEeeeccCCCCC----CC--ccceeeeeecceEEEeeeecCCceeeeccCCc-eEEEEeeccceEEEEEcCCCeEE
Confidence 4567776665554321 11 12346667889999999987788888777776 45555556555554444333336
Q ss_pred EEEEeCCCC
Q psy8875 648 LYWVDAKLN 656 (734)
Q Consensus 648 LYw~D~~~~ 656 (734)
|.|.++-.+
T Consensus 92 LLWkesih~ 100 (339)
T PF09910_consen 92 LLWKESIHD 100 (339)
T ss_pred EEEecccCC
Confidence 778775444
No 251
>KOG0274|consensus
Probab=81.84 E-value=1e+02 Score=35.33 Aligned_cols=206 Identities=14% Similarity=0.081 Sum_probs=115.3
Q ss_pred EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 498 IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 498 l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
+........++++.. .+.++++-....+++.-+...|.-..++. . ....+......+.+..+-+....|.+.++.
T Consensus 245 l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-g---h~stv~~~~~~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ-G---HTSSVRCLTIDPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec-C---CCceEEEEEccCceEeeccCCceEEEEecc
Confidence 344556778888875 56677777777888888876554433332 1 222222222446666665667788898888
Q ss_pred CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
......++.+.....+.+.++ .++|+-.-....-+||.+. -++-.. .+.....+...|+++.. .++|=.. ....
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~-sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~ 393 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLK-SLSGHTGRVYSLIVDSE-NRLLSGS-LDTT 393 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeee-eecCCcceEEEEEecCc-ceEEeee-eccc
Confidence 555555554466677888886 5555555432222344443 121112 22334455677877633 5555443 3367
Q ss_pred EEEEecCCC-ceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 658 ISSCDYNGG-NRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 658 I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
|...++.+. .....+..+..+ ..+|.+....|.+..+. +.|..-+..+++.++++..
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~--v~~l~~~~~~Lvs~~aD-~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSL--VSSLLLRDNFLVSSSAD-GTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred eEeecCCchhhhhhhhcCCccc--ccccccccceeEecccc-ccEEEeecccCceeeeecc
Confidence 888888877 443333322111 23444455555444443 5566656667777776654
No 252
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=81.75 E-value=1.6 Score=29.03 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=15.8
Q ss_pred CCcCccccCCCcceeecCCCcEecC
Q psy8875 398 GCLHKCVDLPVGYMCECNEGYKLSS 422 (734)
Q Consensus 398 ~C~~~C~~~~~~~~C~C~~G~~l~~ 422 (734)
.|.+.|..... ..|.|++||.|..
T Consensus 7 ~CpA~CDpn~~-~~C~CPeGyIlde 30 (34)
T PF09064_consen 7 ECPADCDPNSP-GQCFCPEGYILDE 30 (34)
T ss_pred cCCCccCCCCC-CceeCCCceEecC
Confidence 34555654333 3799999998863
No 253
>KOG0263|consensus
Probab=81.53 E-value=79 Score=36.76 Aligned_cols=175 Identities=11% Similarity=0.074 Sum_probs=97.5
Q ss_pred cceEEeecCCCceEEEecCCcce-EEEeeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~-~~i~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..+|-=+++.....++..+-..| ..+.|.|. -.|++.... +.-.....+ ......++...+....-+++.|.. +
T Consensus 473 ~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d-~~~PlRifaghlsDV~cv~FHPNs-~ 548 (707)
T KOG0263|consen 473 SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTD-HNKPLRIFAGHLSDVDCVSFHPNS-N 548 (707)
T ss_pred cceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecc-cCCchhhhcccccccceEEECCcc-c
Confidence 34444445443333333333333 34556543 345554433 222222223 223333333456677778898654 4
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
.-.|.+...+++..+.......-++.+.-....+|++.|...+| +..+..+.|...++.++.+...+.+.-.....|+
T Consensus 549 Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L--aSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 549 YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL--ASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS 626 (707)
T ss_pred ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE--eecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence 44455667778888775555555566667777899999855433 3323456777777766443322223344456788
Q ss_pred EecCCCeEEEEeCCCCeEEEEecC
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
+. ..+.|.++....+.|...++.
T Consensus 627 FS-~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 627 FS-RDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred Ee-cCCCEEEecCCCCeEEEEEch
Confidence 85 566777888887877777654
No 254
>KOG2096|consensus
Probab=81.32 E-value=73 Score=33.24 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=96.4
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CCc--eEEEEeCCCCC-----ccceeeeccCCcEEEEe-CCCCe
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GSE--RTVVIEEDKTI-----ADGLAVDWIYSHIYWTD-AHKNT 570 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~~--~~~~~~~~~~~-----p~glAvD~~~~~lY~td-~~~~~ 570 (734)
...|..|+|.+.-..+.++-....+|+.+.+.. |+. ..+... .+.. ..-|.+--.++-.|+.. +....
T Consensus 132 ~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D-~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 132 YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHID-NLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccccc-ccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 347777777665444333323445565554431 221 111111 1111 11122222234444443 34567
Q ss_pred EEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE--eccCCCceEEE----EEcCCCCceeEEEecC
Q psy8875 571 IELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER--AGMDGSHRNMV----IVSDIKWPNGLTLDLV 644 (734)
Q Consensus 571 I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~--~~ldG~~~~~l----v~~~l~~P~glavD~~ 644 (734)
|...++.|.....|-.. ...-..-||.|..++|-.+.....-++|- ..-||+..++. +.........+++...
T Consensus 211 i~lw~lkGq~L~~idtn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 211 ICLWDLKGQLLQSIDTN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred EEEEecCCceeeeeccc-cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 88888888776665433 33445678888777676665433345543 34477654432 1122223455666655
Q ss_pred CCeEEEEeCCCCeEEEEecC-----CCceEEEEcCC----CCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCce
Q psy8875 645 QRRLYWVDAKLNEISSCDYN-----GGNRRLVLYSP----QTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~d-----G~~~~~i~~~~----~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
..++. +-++.+++...+.| +.+.+++-..+ .....|..|++ -++.++-...++ .|..++..+|+..
T Consensus 290 S~r~v-tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 290 STRAV-TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDY 365 (420)
T ss_pred cceeE-EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccc
Confidence 55543 33444444443332 33443332221 12345666666 344444444432 3344444445443
No 255
>KOG0277|consensus
Probab=81.28 E-value=65 Score=32.61 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=82.6
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec--cCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW--IYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~--~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+|+|......+..+-.+.+.+...++...+....++.+ ..-+-.+||| +.+.++.+.+..++|...+++-...
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--hhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 44566666555555555556666555553322222222221 1223455665 4567788777777777766654332
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCC-ceEEEeccCCCceEEEEEcCCCCceeEEEecC--CCeEEEEeCCCCeE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQN-AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV--QRRLYWVDAKLNEI 658 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~-~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~--~~~LYw~D~~~~~I 658 (734)
..-..+...-....+..|....||-+-.+.. -+|+-....|+...+.+. ....|..|.. +.+|..+-...+.|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah----~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH----NSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec----cceeEeecccccCCcEEEecCCCceE
Confidence 2223344445567777788888887775532 366666666655442221 1234554433 45666665555666
Q ss_pred EEEec
Q psy8875 659 SSCDY 663 (734)
Q Consensus 659 ~~~~~ 663 (734)
+..++
T Consensus 216 r~wDi 220 (311)
T KOG0277|consen 216 RGWDI 220 (311)
T ss_pred EEEeh
Confidence 65554
No 256
>KOG1407|consensus
Probab=81.16 E-value=67 Score=32.65 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
...-+.|++....+|.+-...+.|.+.+...+.....+.. ...+ .-|+--+.++.+-+.+. ...|..++.. ..++
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~en-i~i~wsp~g~~~~~~~k-dD~it~id~r--~~~~ 140 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGEN-INITWSPDGEYIAVGNK-DDRITFIDAR--TYKI 140 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcc-eEEEEcCCCCEEEEecC-cccEEEEEec--ccce
Confidence 4455778888888888887788888877764433222211 1100 01111112222222221 1222222211 1112
Q ss_pred EEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC-eEEEE
Q psy8875 584 LVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN-EISSC 661 (734)
Q Consensus 584 l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~-~I~~~ 661 (734)
+.. .......-|+.. ..+.|||...| .+.|+....-.-....-+...-..-..|.+|+.++ |+|-.... .+..-
T Consensus 141 ~~~~~~~~e~ne~~w~-~~nd~Fflt~G-lG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLW 216 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWN-NSNDLFFLTNG-LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLW 216 (313)
T ss_pred eehhcccceeeeeeec-CCCCEEEEecC-CceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeecc
Confidence 211 122334566666 56778887756 36666655442222212221112224577775554 44543333 33333
Q ss_pred ecCCCc-eEEEEcCCCCCCCCe-EEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 662 DYNGGN-RRLVLYSPQTLSHPF-SIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 662 ~~dG~~-~~~i~~~~~~~~~P~-gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+++--- .+.+ ..+.+|. .|.+ ..+++..+-....-|-.+..-+|..+..|.
T Consensus 217 D~~ELiC~R~i----sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 217 DVDELICERCI----SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ChhHhhhheee----ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 333322 2222 3466775 5666 456666666666667777778888877765
No 257
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.82 E-value=1.1e+02 Score=34.81 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=9.4
Q ss_pred EEEecCCCeEEEEe
Q psy8875 639 LTLDLVQRRLYWVD 652 (734)
Q Consensus 639 lavD~~~~~LYw~D 652 (734)
.++|...++||+..
T Consensus 222 pa~d~~~g~V~vg~ 235 (488)
T cd00216 222 PTYDPKTNLVYVGT 235 (488)
T ss_pred eeEeCCCCEEEEEC
Confidence 56666677777764
No 258
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.68 E-value=1.1e+02 Score=36.71 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=14.4
Q ss_pred CCceEEEeccCCCceEEEec
Q psy8875 698 QKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 698 ~~~v~~~~~~~G~~~~~l~~ 717 (734)
+++|+.++..||+.+-..+.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cceEEEEeCCCCceEEEecc
Confidence 45677888888887766654
No 259
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=79.56 E-value=56 Score=39.21 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=49.7
Q ss_pred cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEE-EEeC----CCcEEEEecCCCCceEEEEe-CCCCCccceeee
Q psy8875 483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFW-SDIS----EKKIYKAPIDEGSERTVVIE-EDKTIADGLAVD 555 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw-~d~~----~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD 555 (734)
..|..++.+|.+.+.+ +.....+..-+|.|..++|-+ +... ...||+.+|+......+.+. +....|+=-.+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e 408 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE 408 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence 3788888888887776 555555556677777777777 4332 34588888874322222221 133344422221
Q ss_pred -ccCCcEEEEeCCCC
Q psy8875 556 -WIYSHIYWTDAHKN 569 (734)
Q Consensus 556 -~~~~~lY~td~~~~ 569 (734)
-.+-.+|++|.+++
T Consensus 409 ~gdt~ivyv~~a~nn 423 (912)
T TIGR02171 409 NGDTVIVYVSDASNN 423 (912)
T ss_pred CCCeEEEEEcCCCCC
Confidence 11234788887643
No 260
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=79.30 E-value=85 Score=35.51 Aligned_cols=156 Identities=13% Similarity=0.028 Sum_probs=72.3
Q ss_pred CCcEEEEeC----CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-
Q psy8875 558 YSHIYWTDA----HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD- 632 (734)
Q Consensus 558 ~~~lY~td~----~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~- 632 (734)
...||+... ....++.++.+|..|-.+......... +.+- .+|.|++... .+|..+++.|......-...
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~-~~~l-~nG~ll~~~~---~~~~e~D~~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNS-FKQL-PNGNLLIGSG---NRLYEIDLLGKVIWEYDLPGG 187 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SS-EEE--TTS-EEEEEB---TEEEEE-TT--EEEEEE--TT
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccce-eeEc-CCCCEEEecC---CceEEEcCCCCEEEeeecCCc
Confidence 344666555 346677788888876555432221111 3332 4677777662 67888888886433221111
Q ss_pred C-CCceeEEEecCCCeEEEEe------------CCCCeEEEEecCCCceEEEEc------------------------CC
Q psy8875 633 I-KWPNGLTLDLVQRRLYWVD------------AKLNEISSCDYNGGNRRLVLY------------------------SP 675 (734)
Q Consensus 633 l-~~P~glavD~~~~~LYw~D------------~~~~~I~~~~~dG~~~~~i~~------------------------~~ 675 (734)
. ..=+.+...+.++.|..+. .....|..++.+|.-....-. ..
T Consensus 188 ~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 188 YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred ccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 0 1113344443333333332 012345555544432222110 11
Q ss_pred CCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875 676 QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 676 ~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
....|..+|.+. .+.|+++-.....|++++..+|+...+|...
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 122456788885 4999999999999999998888887777543
No 261
>KOG0645|consensus
Probab=78.93 E-value=80 Score=32.25 Aligned_cols=163 Identities=12% Similarity=0.138 Sum_probs=94.6
Q ss_pred CcceEEEeeeccCCeEEEEEeCCC-cEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-- 577 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~-~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-- 577 (734)
.+.+..|||.|..+.|--+....- .|+. ..+ +.. ...++.+.-+.+..+|.. ..|++..|-+..+.+.+...+
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~-k~~-~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWK-KED-GEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEee-cCC-CceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCC
Confidence 357788999886664433332221 2222 222 222 222233334456678876 567777777777777776665
Q ss_pred CCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE-EEcCCCCceeEEEecCCCeEEEEe-CC
Q psy8875 578 GTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV-IVSDIKWPNGLTLDLVQRRLYWVD-AK 654 (734)
Q Consensus 578 G~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l-v~~~l~~P~glavD~~~~~LYw~D-~~ 654 (734)
+.. ...++....+....++.+|..+.||=..+.+.-++++...++...-+. +...-...-++++|+.+.||--++ -.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 333 233556778889999999998888877655445666665444333222 222223556788887777876654 34
Q ss_pred CCeEEE--EecCCCc
Q psy8875 655 LNEISS--CDYNGGN 667 (734)
Q Consensus 655 ~~~I~~--~~~dG~~ 667 (734)
+-+|++ .++.+..
T Consensus 218 tv~Iw~~~~~~~~~~ 232 (312)
T KOG0645|consen 218 TVSIWRLYTDLSGMH 232 (312)
T ss_pred ceEeeeeccCcchhc
Confidence 556777 4444443
No 262
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=78.77 E-value=68 Score=31.31 Aligned_cols=120 Identities=5% Similarity=-0.008 Sum_probs=67.8
Q ss_pred ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEe-CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDI-SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~-~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
...|+++...+.....+. .....+..++|.|...++.++.. ....|...++. +... ..+ .......|+..|.++
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i-~~~--~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKI-FSF--GTQPRNTISWSPDGR 113 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEe-Eee--cCCCceEEEECCCCC
Confidence 345666655554444442 22334889999998888776643 23456555554 2221 112 223445688888877
Q ss_pred cEEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEE
Q psy8875 560 HIYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWS 607 (734)
Q Consensus 560 ~lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwt 607 (734)
.|..+..+ .+.|...++... ..+..........++.+|...+|..+
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~--~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKK--KKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCC--EEeeccccCcEEEEEEcCCCCEEEEE
Confidence 77777644 467888887732 23333333345677777755444433
No 263
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=78.70 E-value=28 Score=41.59 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEE-EeC----CCCeEEEEeCCCCc--eEEEEc
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYW-TDA----HKNTIELANFEGTM--RKVLVR 586 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~-td~----~~~~I~~~~ldG~~--~~~l~~ 586 (734)
++.+|+.+. +++|..++.++...+.+-+... .....-++-+.++.|-+ +.. +...|++.+|+.+. ...|-.
T Consensus 319 tkiAfv~~~-~~~L~~~D~dG~n~~~ve~~~~-~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 319 AKLAFRNDV-TGNLAYIDYTKGASRAVEIEDT-ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred eeEEEEEcC-CCeEEEEecCCCCceEEEecCC-CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 556666663 3478888888544443313321 12223345555677655 432 23468888886433 222333
Q ss_pred CCCCCceeEEEe-CCCCeEEEEecCC
Q psy8875 587 SYLDEPRSLALN-PIDGWMYWSDWGQ 611 (734)
Q Consensus 587 ~~l~~P~~iavD-~~~g~LYwtd~~~ 611 (734)
+...-||=-++. -.+-.+|++|.++
T Consensus 397 e~aaiprwrv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 397 ENAAIPRWRVLENGDTVIVYVSDASN 422 (912)
T ss_pred ccccccceEecCCCCeEEEEEcCCCC
Confidence 455567655553 1122589999764
No 264
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=78.66 E-value=0.71 Score=23.95 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=8.7
Q ss_pred cccCCCCCccCC
Q psy8875 202 SCACPEGLKLLP 213 (734)
Q Consensus 202 ~C~C~~G~~~~~ 213 (734)
+|.|++||.|..
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 488999998864
No 265
>KOG2048|consensus
Probab=78.35 E-value=1.3e+02 Score=34.49 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=92.9
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC---CCcc--ceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK---TIAD--GLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~---~~p~--glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
.....+.--|..|..+.|-+.-...-+||+...+. ......+.... .... .+.+| ..+|++.......++..
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid--~~k~~~~s~~~~~le~~ 456 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTID--KNKLFLVSKNIFSLEEF 456 (691)
T ss_pred CCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEec--CceEEEEecccceeEEE
Confidence 34455555667777888888777777899998873 33333332111 0111 22444 44444444445667777
Q ss_pred eCCCCceEEEEc---C-CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEe-cCCCeEE
Q psy8875 575 NFEGTMRKVLVR---S-YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLD-LVQRRLY 649 (734)
Q Consensus 575 ~ldG~~~~~l~~---~-~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD-~~~~~LY 649 (734)
.+++...+.+.. . .-....-|++.+...+|-.++ ..+.|.+.++.+.....++..--....++++. ...++|.
T Consensus 457 el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lv 534 (691)
T KOG2048|consen 457 ELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLV 534 (691)
T ss_pred EecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--ccceEEEEEcccceeecchhccCcceeeeeccccccCcEE
Confidence 766554443321 1 234456888988888888777 35789999998876665542111223344444 3456777
Q ss_pred EEeCCCCeEEEEecC
Q psy8875 650 WVDAKLNEISSCDYN 664 (734)
Q Consensus 650 w~D~~~~~I~~~~~d 664 (734)
++++. +.|+.+++.
T Consensus 535 vats~-nQv~efdi~ 548 (691)
T KOG2048|consen 535 VATSN-NQVFEFDIE 548 (691)
T ss_pred EEecC-CeEEEEecc
Confidence 77754 567766663
No 266
>KOG0640|consensus
Probab=76.91 E-value=49 Score=34.31 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=103.0
Q ss_pred ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 499 VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 499 ~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
......+..|+|+|+ ..|..+....+.|.-+++...+. +...+-......+.|.+.|.+..|.+... ...+...+.+
T Consensus 169 YDH~devn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd-Hp~~rlYdv~ 246 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD-HPTLRLYDVN 246 (430)
T ss_pred hhccCcccceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC-CCceeEEecc
Confidence 334556678899985 45666666777777777653222 11111123456778999987776665432 3455666665
Q ss_pred CCceEEEEcCC---CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE---EEE--cCCCCceeEEEecCCCeEE
Q psy8875 578 GTMRKVLVRSY---LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM---VIV--SDIKWPNGLTLDLVQRRLY 649 (734)
Q Consensus 578 G~~~~~l~~~~---l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~---lv~--~~l~~P~glavD~~~~~LY 649 (734)
..+.-+-.... ......+-.. .+|.||+|... .+.|... ||-..+- +.. .+.. .-...+. .+++ |
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSk-DG~Iklw--DGVS~rCv~t~~~AH~gse-vcSa~Ft-kn~k-y 319 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYS-STGSLYVTASK-DGAIKLW--DGVSNRCVRTIGNAHGGSE-VCSAVFT-KNGK-Y 319 (430)
T ss_pred ceeEeeecCcccccccceeEEEec-CCccEEEEecc-CCcEEee--ccccHHHHHHHHhhcCCce-eeeEEEc-cCCe-E
Confidence 54432222111 1222334443 47899999743 3444332 3322111 100 0000 1112221 2333 3
Q ss_pred EEeCCCCeE-EEEecCCCceEEEEc-CCC--CCCCCeEEEE---ECCEEEEEeCCCCceEEEeccCCCceEEEeccc
Q psy8875 650 WVDAKLNEI-SSCDYNGGNRRLVLY-SPQ--TLSHPFSIST---FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH 719 (734)
Q Consensus 650 w~D~~~~~I-~~~~~dG~~~~~i~~-~~~--~~~~P~gl~v---~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~ 719 (734)
+..++...+ ....+ +++|.++.. +.. ..+.-..-++ .++++.+.|-.++++...+..++..+..++..|
T Consensus 320 iLsSG~DS~vkLWEi-~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEI-STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred EeecCCcceeeeeee-cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC
Confidence 333333322 22222 222222211 110 0000111123 478999999999999888888887777776554
No 267
>KOG2139|consensus
Probab=76.58 E-value=1.1e+02 Score=32.58 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=102.8
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC---CCCc
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF---EGTM 580 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l---dG~~ 580 (734)
-+..|.|......+--+......|+.-+.+.|....+. ..++....-|-..|.+..||-+.-. ....+.+. -.+.
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~d-avfrlw~e~q~wt~e 274 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATCD-AVFRLWQENQSWTKE 274 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEeccc-ceeeeehhcccceec
Confidence 34667777544444334455667877777755443332 2233333334444444444444331 11111111 1222
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce---------EEEEEcC-------------CCCcee
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR---------NMVIVSD-------------IKWPNG 638 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~---------~~lv~~~-------------l~~P~g 638 (734)
+-++.. ....+-.-+|...+|.++-.++ +.|++...++... ++++..+ -..+.-
T Consensus 275 rw~lgs---grvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~ 350 (445)
T KOG2139|consen 275 RWILGS---GRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQC 350 (445)
T ss_pred ceeccC---CceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccce
Confidence 222221 2556677788888888888664 7888887765431 2222211 134677
Q ss_pred EEEecCCCeEEEEeCCCCeE-------EEEecCCCceEEEE-cCCCCCCCCeEEEE----ECCEEEEEeCCCCceEEEe
Q psy8875 639 LTLDLVQRRLYWVDAKLNEI-------SSCDYNGGNRRLVL-YSPQTLSHPFSIST----FEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I-------~~~~~dG~~~~~i~-~~~~~~~~P~gl~v----~~~~lywtd~~~~~v~~~~ 705 (734)
||+|+.+.+|-++=.+...| .+++..-+-...+. -+.....+|..|.+ .++.|...-|.++++.++.
T Consensus 351 lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 351 LAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred eeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence 99999999998886544433 33222212111111 11223345766665 3567777778777776664
No 268
>KOG4328|consensus
Probab=76.50 E-value=1.2e+02 Score=33.14 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=94.2
Q ss_pred eeccceEEeecCCCceEEEecC---CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCce-EEEEeCCCCCccceee
Q psy8875 480 ARKHDIRKISLDHHEMTAIVNS---TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSER-TVVIEEDKTIADGLAV 554 (734)
Q Consensus 480 ~~~~~I~~i~l~~~~~~~l~~~---~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~-~~~~~~~~~~p~glAv 554 (734)
+-+..|+-.++++.....++.. .....++++...++.+++.+-.. ....+++.. ++.. .+.+. -..+.+||+
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh--~kKI~sv~~ 330 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLH--KKKITSVAL 330 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhh--hcccceeec
Confidence 3456677777777665555432 22345667777777888776433 333333332 2222 22222 227889999
Q ss_pred eccCCcEEEEeCCCCeEEEEeC---CCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC---ceEE
Q psy8875 555 DWIYSHIYWTDAHKNTIELANF---EGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS---HRNM 627 (734)
Q Consensus 555 D~~~~~lY~td~~~~~I~~~~l---dG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~---~~~~ 627 (734)
.|....++.|-+..+.....++ .++....|- ...-....+.-+.|..|.|.-|.....-+|+-+..=+. ...+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9999998888777665545544 333321111 12223445666777777766555332223333310011 1122
Q ss_pred EEEcC----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc
Q psy8875 628 VIVSD----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN 667 (734)
Q Consensus 628 lv~~~----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~ 667 (734)
|.+.. --.|.--++|+....||+.. ....|..++-.|+.
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~-~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGR-YPRPIDVFDGNGGQ 453 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEec-cCcceeEEcCCCCE
Confidence 22221 11244456787555555554 34457776544443
No 269
>PRK10115 protease 2; Provisional
Probab=76.38 E-value=1.7e+02 Score=34.76 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=86.9
Q ss_pred ceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEe-----CCCcEEEEecCCCC-ceEEEEeCCCCCccceee--
Q psy8875 484 DIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDI-----SEKKIYKAPIDEGS-ERTVVIEEDKTIADGLAV-- 554 (734)
Q Consensus 484 ~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~-----~~~~I~~~~l~~g~-~~~~~~~~~~~~p~glAv-- 554 (734)
.|+.+++.+.. +...+...+ ..++|.+..+.||++-. ....|++.++..+. ..+.++. ....+..+.+
T Consensus 154 ~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~ 230 (686)
T PRK10115 154 GIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYE-EKDDTFYVSLHK 230 (686)
T ss_pred EEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEe-eCCCCEEEEEEE
Confidence 45566665433 112222222 45788776777887643 22478888887552 2333443 2222222222
Q ss_pred eccCCcEEEEeCC--CCeEEEEeC---CCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cC-CCceEEEeccCCC-ceE
Q psy8875 555 DWIYSHIYWTDAH--KNTIELANF---EGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WG-QNAKIERAGMDGS-HRN 626 (734)
Q Consensus 555 D~~~~~lY~td~~--~~~I~~~~l---dG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~-~~~~I~~~~ldG~-~~~ 626 (734)
....+.|++.-.. +..+..... ++..+ .++......- ..+....+.||+.. ++ ...+|.+++++.. ..+
T Consensus 231 s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~ 307 (686)
T PRK10115 231 TTSKHYVVIHLASATTSEVLLLDAELADAEPF-VFLPRRKDHE--YSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWE 307 (686)
T ss_pred cCCCCEEEEEEECCccccEEEEECcCCCCCce-EEEECCCCCE--EEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCe
Confidence 1123333332221 344555542 33322 2222222221 22223345666654 32 3568888888743 234
Q ss_pred EEEEcCC-CCceeEEEecCCCeEEEEe--CCCCeEEEEecCCCceEEE
Q psy8875 627 MVIVSDI-KWPNGLTLDLVQRRLYWVD--AKLNEISSCDYNGGNRRLV 671 (734)
Q Consensus 627 ~lv~~~l-~~P~glavD~~~~~LYw~D--~~~~~I~~~~~dG~~~~~i 671 (734)
+++...- ....++++. .+.|+++- .+..+|..+++++...+.+
T Consensus 308 ~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 308 ELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 4554422 234566664 77777774 3455777777766544443
No 270
>KOG1645|consensus
Probab=75.52 E-value=1.2e+02 Score=32.66 Aligned_cols=55 Identities=4% Similarity=0.082 Sum_probs=36.8
Q ss_pred eeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC
Q psy8875 480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534 (734)
Q Consensus 480 ~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~ 534 (734)
+.+..|..+++..............++...||..+.+..++...++.|+.+++..
T Consensus 213 sl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 213 SLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 4456677777766554433334467788888877766666666778888887763
No 271
>smart00284 OLF Olfactomedin-like domains.
Probab=75.37 E-value=1e+02 Score=31.57 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=78.0
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCCCceE--EEEcCC-----------CCCceeEEEeCCCCe-EEEEecCCCceE
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK--VLVRSY-----------LDEPRSLALNPIDGW-MYWSDWGQNAKI 615 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~--~l~~~~-----------l~~P~~iavD~~~g~-LYwtd~~~~~~I 615 (734)
.|..|- ++.||+-...+..|.+.+|...... .++... ...-..+|||...=+ ||-+. ...+.|
T Consensus 77 tG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~-~~~g~i 153 (255)
T smart00284 77 TGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE-QNAGKI 153 (255)
T ss_pred ccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc-CCCCCE
Confidence 344443 6999998888889999999876653 222211 123358999964323 34343 345788
Q ss_pred EEeccCCCceEEE--EEcCCCCc---eeEEEecCCCeEEEEeC---CCCeEE-EEecCCCc-eEEEEcCCCCCCCCeEEE
Q psy8875 616 ERAGMDGSHRNMV--IVSDIKWP---NGLTLDLVQRRLYWVDA---KLNEIS-SCDYNGGN-RRLVLYSPQTLSHPFSIS 685 (734)
Q Consensus 616 ~~~~ldG~~~~~l--v~~~l~~P---~glavD~~~~~LYw~D~---~~~~I~-~~~~dG~~-~~~i~~~~~~~~~P~gl~ 685 (734)
..+.||-....+. ....+..+ +++-| =|.||.+++ ...+|. ..+..++. ..+-+.-.....+-..|.
T Consensus 154 vvSkLnp~tL~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~ 230 (255)
T smart00284 154 VISKLNPATLTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLD 230 (255)
T ss_pred EEEeeCcccceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceece
Confidence 8888876554433 22333332 23333 589999985 233443 33443322 222121111112222355
Q ss_pred E--ECCEEEEEeCCCCceEEE
Q psy8875 686 T--FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 686 v--~~~~lywtd~~~~~v~~~ 704 (734)
. .+..||.=| ++.++..
T Consensus 231 YNP~d~~LY~wd--ng~~l~Y 249 (255)
T smart00284 231 YNPNDRKLYAWN--NGHLVHY 249 (255)
T ss_pred eCCCCCeEEEEe--CCeEEEE
Confidence 4 577888855 4444433
No 272
>KOG0269|consensus
Probab=73.90 E-value=58 Score=37.90 Aligned_cols=148 Identities=9% Similarity=0.032 Sum_probs=91.6
Q ss_pred CcEEEEeCCCCeEEEEeCCCCceEEE---EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC
Q psy8875 559 SHIYWTDAHKNTIELANFEGTMRKVL---VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW 635 (734)
Q Consensus 559 ~~lY~td~~~~~I~~~~ldG~~~~~l---~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~ 635 (734)
.+|..|-+.++.|.+.++.-..+..+ +.+.-....-+.+++..-+|.++.. ..+.|...+|.-..........-..
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS-QDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS-QDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecC-CCceEEEEeeecccccccccccchh
Confidence 45666777788899998876433332 2344456677888888888888863 3466766666544444344444555
Q ss_pred ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccC
Q psy8875 636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~ 708 (734)
.+.+.+.+..+..|.+-...+.+...|+.-..+-.+... ..-+--+-+.+.-++.|.+..+..+.+++=-++
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 677888888888888888888888888876554332111 111112334445577777776665555553344
No 273
>KOG0264|consensus
Probab=73.47 E-value=1.4e+02 Score=32.45 Aligned_cols=160 Identities=7% Similarity=0.081 Sum_probs=94.9
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
...+|.|.....-...+-...+.|...++..... .++++...-...+.++..+....||-+-...+++...++.
T Consensus 179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 3566777654433333444455665555543222 2333444455677889999999999888888888888775
Q ss_pred C--CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE-EEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875 578 G--TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM-VIVSDIKWPNGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 578 G--~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~-lv~~~l~~P~glavD~~~~~LYw~D~~ 654 (734)
. ......+.........+++.|.+++|.-|-.. ...|...++---.... .+...-.....+.+++....|.-+-..
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA-DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccC-CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 2 22223333445567889999999888888632 3556555543222211 111112233456677777777777666
Q ss_pred CCeEEEEecC
Q psy8875 655 LNEISSCDYN 664 (734)
Q Consensus 655 ~~~I~~~~~d 664 (734)
.+++..-++.
T Consensus 338 D~rl~vWDls 347 (422)
T KOG0264|consen 338 DRRLNVWDLS 347 (422)
T ss_pred CCcEEEEecc
Confidence 6676666654
No 274
>KOG3914|consensus
Probab=72.71 E-value=92 Score=33.47 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=73.5
Q ss_pred CCCccceeeeccCCcEEEEeCCCC--eEEEEeCC-CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKN--TIELANFE-GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~--~I~~~~ld-G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
...|..|.+......+-++|.... .+...+.+ |..+.+ .+.+....++||.|...+|.-+|. ..+|++....+
T Consensus 107 ~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~IitaDR--DEkIRvs~ypa 182 (390)
T KOG3914|consen 107 PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPDDQFIITADR--DEKIRVSRYPA 182 (390)
T ss_pred ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh--hhhhhhhheeeecCCCCEEEEecC--CceEEEEecCc
Confidence 346777777666666666666422 23333333 333322 255667789999998888888884 35788777776
Q ss_pred CceE-EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceE
Q psy8875 623 SHRN-MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRR 669 (734)
Q Consensus 623 ~~~~-~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~ 669 (734)
.... .+..+.-.....|++ ..+++.|+-++.++|+..++. |+...
T Consensus 183 ~f~IesfclGH~eFVS~isl--~~~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 183 TFVIESFCLGHKEFVSTISL--TDNYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ccchhhhccccHhheeeeee--ccCceeeecCCCCcEEEEecccCCccc
Confidence 5421 122223345667777 467778888888888888854 54443
No 275
>KOG0292|consensus
Probab=72.66 E-value=2.2e+02 Score=34.17 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=86.0
Q ss_pred eEEEeeeccCCeEEEEEeCCCc--EEEEecCCCCceEE-EEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKK--IYKAPIDEGSERTV-VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~--I~~~~l~~g~~~~~-~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
+..+||++ +--|+++....+. ++|++-. ..-++ ...+-.+++.++-+++ ...|..+.+..+.|++.+|+-+..
T Consensus 209 VNwaAfhp-TlpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 209 VNWAAFHP-TLPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred cceEEecC-CcceEEecCCcceeeEEEeccc--cceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccc
Confidence 34456665 4456666554444 4454422 22222 2233456777888884 567888888899999999985543
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
...+...-..---||++| ...++.+..|+....-.+ . ..+-+.+| ..+.||++. ...|+..
T Consensus 285 v~tfrrendRFW~laahP------------~lNLfAAgHDsGm~VFkl-e--RErpa~~v--~~n~LfYvk--d~~i~~~ 345 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHP------------ELNLFAAGHDSGMIVFKL-E--RERPAYAV--NGNGLFYVK--DRFIRSY 345 (1202)
T ss_pred eeeeeccCCeEEEEEecC------------CcceeeeecCCceEEEEE-c--ccCceEEE--cCCEEEEEc--cceEEee
Confidence 222211111222334433 223444444543322111 1 12335666 356666665 4578888
Q ss_pred ecCCCceEEEEcC---CCCCCCCeEEEE--ECCEEEEE
Q psy8875 662 DYNGGNRRLVLYS---PQTLSHPFSIST--FEDWLYWS 694 (734)
Q Consensus 662 ~~dG~~~~~i~~~---~~~~~~P~gl~v--~~~~lywt 694 (734)
++....-..+.+- ......|++|.+ .++.+.++
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 8876444333321 111234566666 45666665
No 276
>PRK13684 Ycf48-like protein; Provisional
Probab=71.86 E-value=1.5e+02 Score=31.82 Aligned_cols=198 Identities=10% Similarity=-0.004 Sum_probs=93.2
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC--CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE--DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~--~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
..+|++. .+..| +-...+.|++. -|+|..-+.+... ....+..+... ..+.+|++. ..+.|++..-.|+.-+
T Consensus 92 l~~v~~~--~~~~~-~~G~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~~g-~~G~i~~S~DgG~tW~ 165 (334)
T PRK13684 92 LISISFK--GDEGW-IVGQPSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITAL-GPGTAEMAT-NVGAIYRTTDGGKNWE 165 (334)
T ss_pred eeeeEEc--CCcEE-EeCCCceEEEE-CCCCCCCeEccCCcCCCCCceEEEEE-CCCcceeee-ccceEEEECCCCCCce
Confidence 4456655 33343 33345667774 4645443322111 11233333221 123345443 3567777766666655
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
.+.........++++++.+ .||.- +..+.|++...+|.. -+.+........++|++. .++++|.+- ..+.|...
T Consensus 166 ~~~~~~~g~~~~i~~~~~g--~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-~~g~~~~vg-~~G~~~~~ 240 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDG--KYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-PDGNLWMLA-RGGQIRFN 240 (334)
T ss_pred eCcCCCcceEEEEEECCCC--eEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-CCCCEEEEe-cCCEEEEc
Confidence 5544434456788888743 33332 234678776445543 233333334456778775 356666554 33455432
Q ss_pred ecCC-CceEEEEcC-CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 662 DYNG-GNRRLVLYS-PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 662 ~~dG-~~~~~i~~~-~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
.-|+ ..=+.+... .......++|++. ++.+ |+-...+.|++. ...|+..+.+
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~S-~d~G~tW~~~ 295 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLVS-KDGGKTWEKD 295 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEEe-CCCCCCCeEC
Confidence 2333 322222111 0011234566664 4454 444444666554 3455555544
No 277
>KOG0294|consensus
Probab=71.86 E-value=1.3e+02 Score=31.38 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=80.8
Q ss_pred CcceEEEeeeccCCeEEEEE-eCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC--cEEEEeCCCCeEEEEeCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSD-ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d-~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~--~lY~td~~~~~I~~~~ldG 578 (734)
...+.+||++. .|++. ....+|+.+++........++. -......|.++.... +|. +-+..+.|.+.+...
T Consensus 43 ~~sitavAVs~----~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 43 AGSITALAVSG----PYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGS 116 (362)
T ss_pred ccceeEEEecc----eeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhhee-eecCCCcEEEEEcCC
Confidence 34667787762 35544 3456788888774443333333 234455555554332 222 223356666555432
Q ss_pred CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
=...--+...-.+.++|+|+| .++|-.+-.+ ...|..-+| .|....++ .--..+.-+.+++.+.+.|+.-. ++
T Consensus 117 W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~-D~~lr~WNLV~Gr~a~v~--~L~~~at~v~w~~~Gd~F~v~~~--~~ 190 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHP-SGKLALSVGG-DQVLRTWNLVRGRVAFVL--NLKNKATLVSWSPQGDHFVVSGR--NK 190 (362)
T ss_pred eEEeeeecccccccceeEecC-CCceEEEEcC-CceeeeehhhcCccceee--ccCCcceeeEEcCCCCEEEEEec--cE
Confidence 111111123345589999998 4777777644 345555554 45444333 22345666888877776666553 45
Q ss_pred EEEEecCC
Q psy8875 658 ISSCDYNG 665 (734)
Q Consensus 658 I~~~~~dG 665 (734)
|....++.
T Consensus 191 i~i~q~d~ 198 (362)
T KOG0294|consen 191 IDIYQLDN 198 (362)
T ss_pred EEEEeccc
Confidence 55544443
No 278
>PHA02713 hypothetical protein; Provisional
Probab=71.43 E-value=2e+02 Score=33.25 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=75.2
Q ss_pred cCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCce-eEEEeCCCCeEEEEecCC----CceEEEeccCCCce
Q psy8875 557 IYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPR-SLALNPIDGWMYWSDWGQ----NAKIERAGMDGSHR 625 (734)
Q Consensus 557 ~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~-~iavD~~~g~LYwtd~~~----~~~I~~~~ldG~~~ 625 (734)
.+++||++-.. ...+++.++....-..+ ..+..|+ +.++-..+|+||..--.. ...+++.+.....-
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~--~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL--PPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC--CCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 46889988542 23567777655433222 2333343 222222478999986211 13567776653322
Q ss_pred EEEEEcCCCCce-eEEEecCCCeEEEEeCC-----------------------CCeEEEEecCCCceEEEEcCCCCCCCC
Q psy8875 626 NMVIVSDIKWPN-GLTLDLVQRRLYWVDAK-----------------------LNEISSCDYNGGNRRLVLYSPQTLSHP 681 (734)
Q Consensus 626 ~~lv~~~l~~P~-glavD~~~~~LYw~D~~-----------------------~~~I~~~~~dG~~~~~i~~~~~~~~~P 681 (734)
. .+ ..+..|. +.++-..+++||+.-.. .+.|+++++....=..+..- ......
T Consensus 380 ~-~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~ 456 (557)
T PHA02713 380 K-ML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIR 456 (557)
T ss_pred E-EC-CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-Cccccc
Confidence 2 11 2232221 12222357999998432 23566666554332222211 111223
Q ss_pred eEEEEECCEEEEEeCCC------CceEEEeccC
Q psy8875 682 FSISTFEDWLYWSDWQQ------KAIYKANKFT 708 (734)
Q Consensus 682 ~gl~v~~~~lywtd~~~------~~v~~~~~~~ 708 (734)
.++++.+++||+.-..+ ..|.+.++.+
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 46888999999985322 2356676655
No 279
>KOG3881|consensus
Probab=71.35 E-value=1.5e+02 Score=31.83 Aligned_cols=112 Identities=9% Similarity=-0.003 Sum_probs=63.7
Q ss_pred CceeEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-eeEEEecCCCeEEEEeCCCCeEEEEecCCCce
Q psy8875 591 EPRSLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR 668 (734)
Q Consensus 591 ~P~~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~ 668 (734)
++.+|.+-+- ..+-|.|-.. .+.+...+..-+.|.+.-..-...| ..+++++.+..||+++.. +.|..+|+.+...
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~-~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITR-YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKL 281 (412)
T ss_pred eeccceecCCCCCceEEEEec-ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCcee
Confidence 4455555322 1345555432 3566666666444433322222333 578889999999999965 5677766655433
Q ss_pred EEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875 669 RLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 669 ~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~ 705 (734)
..... ...-+.+.+|......-|.+..+-.+..||.
T Consensus 282 ~g~~~-kg~tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 282 LGCGL-KGITGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred ecccc-CCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence 22211 1234567777777766666666666666664
No 280
>KOG1517|consensus
Probab=71.35 E-value=58 Score=39.42 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=92.0
Q ss_pred EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE--
Q psy8875 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-- 585 (734)
Q Consensus 508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-- 585 (734)
++|.-..|+||.+.. ...|+.-+++.-....-+-.+.-..++.|.-|-.+++++.+-...++|.+++..-..+..++
T Consensus 1171 ~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 344445677777632 33444444441111111111223457788888888999999999999999876543332222
Q ss_pred -cCCCCC--ceeEEEeCCCCeE-EEEecCCCceEEEeccCCCceEEEEEcCCCC-----ceeEEEecCCCeEEEEeCCCC
Q psy8875 586 -RSYLDE--PRSLALNPIDGWM-YWSDWGQNAKIERAGMDGSHRNMVIVSDIKW-----PNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 586 -~~~l~~--P~~iavD~~~g~L-Ywtd~~~~~~I~~~~ldG~~~~~lv~~~l~~-----P~glavD~~~~~LYw~D~~~~ 656 (734)
...... ..++.+-+ +|+- .++. ...+.|+..++-+..+...+.....| -.+|+|. ....|+-+-+. .
T Consensus 1250 ~R~h~~~~~Iv~~slq~-~G~~elvSg-s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH-~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQR-QGLGELVSG-SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH-EHAPIIASGSA-Q 1325 (1387)
T ss_pred ecccCCcccceeEEeec-CCCcceeee-ccCCeEEEEecccCcccccceeeeccccCccceeeeec-cCCCeeeecCc-c
Confidence 111112 34455543 2333 2222 24577877777664333333222222 3457774 34455544433 7
Q ss_pred eEEEEecCCCceEEEEcCCCC----CCCCeEEEEE
Q psy8875 657 EISSCDYNGGNRRLVLYSPQT----LSHPFSISTF 687 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~~----~~~P~gl~v~ 687 (734)
.|..+++.|.....+...+.. ..++..|++.
T Consensus 1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred eEEEEecChhhhcccccCcccccCcCCCcceeeec
Confidence 788888888876666544332 3334445553
No 281
>KOG0292|consensus
Probab=71.21 E-value=59 Score=38.54 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=89.0
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
.+..||+|+|..-.|. +...++.|.-.+...+.....+ .+--..++||++. .++-||++-...-.|.|.+.+.+...
T Consensus 10 sRvKglsFHP~rPwIL-tslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWIL-TSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred ccccceecCCCCCEEE-EeecCceeeeehhhhhhHHhhh-hccCCccceeeec-CCCCeEEecCCccEEEEEecccceeh
Confidence 4677889988655544 3345666665554423221111 1223457899998 56789999887888999988765443
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
.-+.+.+...|-+.+++..-+|.=+ +....|..-++-..+-..++.+.-++...-.+-+.+ -|.++-+-..+|...+
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSA--SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSA--SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWD 163 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEc--cCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEe
Confidence 3334667778888887665444333 223455555555444444444443444334443323 3334444445566555
Q ss_pred cCC
Q psy8875 663 YNG 665 (734)
Q Consensus 663 ~dG 665 (734)
+.|
T Consensus 164 isG 166 (1202)
T KOG0292|consen 164 ISG 166 (1202)
T ss_pred ecc
Confidence 555
No 282
>KOG0282|consensus
Probab=70.80 E-value=56 Score=35.88 Aligned_cols=156 Identities=9% Similarity=0.051 Sum_probs=83.8
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+.+|.|-+..++|+.+-...++|+..++-. +....+... -...+..++... .+.-|.+-+....|...+.....
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccc-cCCeeeeeecceeeeeeccccce
Confidence 345567778888888888877777777665542 211111111 112234444442 23344444445556555554443
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
...-+ .....|.-+.+.|.+..+|++-. ...+|...++.......-+...+..-+.|++= .+++=|++.+....|..
T Consensus 292 ~~~~f-~~~~~~~cvkf~pd~~n~fl~G~-sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~-~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 292 VLSRF-HLDKVPTCVKFHPDNQNIFLVGG-SDKKIRQWDIRSGKVVQEYDRHLGAILDITFV-DEGRRFISSSDDKSVRI 368 (503)
T ss_pred EEEEE-ecCCCceeeecCCCCCcEEEEec-CCCcEEEEeccchHHHHHHHhhhhheeeeEEc-cCCceEeeeccCccEEE
Confidence 33322 23456778888888778999873 45788877775433111112345555666662 45555555444444433
Q ss_pred Ee
Q psy8875 661 CD 662 (734)
Q Consensus 661 ~~ 662 (734)
.+
T Consensus 369 We 370 (503)
T KOG0282|consen 369 WE 370 (503)
T ss_pred EE
Confidence 33
No 283
>KOG3621|consensus
Probab=69.91 E-value=82 Score=36.39 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-----ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-----HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-----~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
....+|+.++..-+||.-|. .++|.-..++-. ....|+..+ . -=+.||+...+|.++....--+.- .+
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~--~Gkv~~~~L~s~~~~~~~~q~il~~d--s-~IVQlD~~q~~LLVStl~r~~Lc~--tE 197 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDS--QGKVVLTELDSRQAFLSKSQEILSED--S-EIVQLDYLQSYLLVSTLTRCILCQ--TE 197 (726)
T ss_pred ceEEEEEecccccEEeecCC--CceEEEEEechhhhhccccceeeccC--c-ceEEeecccceehHhhhhhhheee--cc
Confidence 34567888877778888884 467776666651 111122111 1 136789889888887654332222 22
Q ss_pred CCceEEEEcCCCCCCCCeEEEEECC-------EEEEEeCCCCceEEEeccCCCceEE
Q psy8875 665 GGNRRLVLYSPQTLSHPFSISTFED-------WLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 665 G~~~~~i~~~~~~~~~P~gl~v~~~-------~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
-...+.|-..+....-++|--++.+ .||-+-.+ .++|.+|- .|...++
T Consensus 198 ~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~-~G~V~~T 252 (726)
T KOG3621|consen 198 AETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF-AGEVIKT 252 (726)
T ss_pred hhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec-ceeEEEe
Confidence 1122222221111222455444433 56666555 56777763 4554443
No 284
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=69.48 E-value=39 Score=38.18 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.0
Q ss_pred CCCCccceeeeccCCcEEEEeCC
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAH 567 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~ 567 (734)
.+..|++|++.+.++.+|++...
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTN 437 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTN 437 (616)
T ss_pred cccCccceeecCCcceEEEEeCC
Confidence 46789999999999999999654
No 285
>KOG1226|consensus
Probab=69.21 E-value=31 Score=40.12 Aligned_cols=18 Identities=33% Similarity=0.826 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCcCCC
Q psy8875 112 TWMCDDNPDCSDGSDEKSC 130 (734)
Q Consensus 112 ~~~Cdg~~dC~dg~de~~C 130 (734)
.++| |...|.+|.-+..|
T Consensus 474 ~~~C-G~C~C~~G~~G~~C 491 (783)
T KOG1226|consen 474 TFVC-GQCRCDEGWLGKKC 491 (783)
T ss_pred cEEe-cceecCCCCCCCcc
Confidence 3444 77778888888777
No 286
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=68.63 E-value=1.4e+02 Score=30.43 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=69.3
Q ss_pred CccceeeeccCCcEEEEe--CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc-eEEEeccCCCc
Q psy8875 548 IADGLAVDWIYSHIYWTD--AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSH 624 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td--~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~-~I~~~~ldG~~ 624 (734)
.+...|+....+.+.+.. .....+++...++....++....+. .-.+|+. +.|+..+.+... ++.+...+|+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~---~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLT---RPSWDPD-GWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccc---cccccCC-CCEEEEEcCCCceEEEEecCCCcc
Confidence 567788887777777766 5567888888877766655333444 4477876 888887755432 23332345655
Q ss_pred eEEEEEcC-CC-CceeEEEecCCCeEEEEe--CCCCeEEEEe
Q psy8875 625 RNMVIVSD-IK-WPNGLTLDLVQRRLYWVD--AKLNEISSCD 662 (734)
Q Consensus 625 ~~~lv~~~-l~-~P~glavD~~~~~LYw~D--~~~~~I~~~~ 662 (734)
..+.+... +. ....|.|.+.+.||-++- ...++|+...
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 54444322 22 457899998888877664 3345666654
No 287
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=68.44 E-value=29 Score=38.02 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=34.2
Q ss_pred CceeEEEecCCCeEEEEeCCCCeEEEEecCCCc-eEEEEc---CC-------------CCCCCC--eEEEEECCEEEEEe
Q psy8875 635 WPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN-RRLVLY---SP-------------QTLSHP--FSISTFEDWLYWSD 695 (734)
Q Consensus 635 ~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~---~~-------------~~~~~P--~gl~v~~~~lywtd 695 (734)
.+..|.|....+.||++.+..+.|+.+++.-.. .+.+.+ +. .....| ..|++++.+||||.
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 456777888899999999999999999987643 333221 00 011123 34555899999996
Q ss_pred C
Q psy8875 696 W 696 (734)
Q Consensus 696 ~ 696 (734)
+
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 3
No 288
>KOG0284|consensus
Probab=67.93 E-value=75 Score=34.27 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=64.6
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
.+.++.|...+..+ ++....+.|....++ -+....+.......++.||+-+ +...|.+-+..++|.+.+..-...+.
T Consensus 140 ~Vr~m~ws~~g~wm-iSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~ 216 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWM-ISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEER 216 (464)
T ss_pred cceeEEEccCCCEE-EEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhh
Confidence 45667776433322 222223444444443 2223332222335688999987 78889999999999998875444444
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEe
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd 608 (734)
++.+....++.++-+|..+.|+-..
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred eeccCCCCcceeccCCccceeEEcc
Confidence 4567778999999999988887654
No 289
>KOG1036|consensus
Probab=67.49 E-value=1.6e+02 Score=30.63 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=49.0
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCCC----ceEEEEc------C--C-CCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGT----MRKVLVR------S--Y-LDEPRSLALNPIDGWMYWSDWGQNAKIE 616 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~----~~~~l~~------~--~-l~~P~~iavD~~~g~LYwtd~~~~~~I~ 616 (734)
+.|++-+ ++-=|+..+-.+||.+-.+|.+ .++-.+. . . ....++|+++|..+.++-.. ..+.|.
T Consensus 181 R~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG--sDG~V~ 257 (323)
T KOG1036|consen 181 RCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG--SDGIVN 257 (323)
T ss_pred EEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC--CCceEE
Confidence 4566665 5556666666677766666554 2221111 1 1 22346888888766555433 334444
Q ss_pred EeccCCCceEEEEE-cCC-CCceeEEEecCCCeEEEEeC
Q psy8875 617 RAGMDGSHRNMVIV-SDI-KWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 617 ~~~ldG~~~~~lv~-~~l-~~P~glavD~~~~~LYw~D~ 653 (734)
.- |+.+++.+.. .+. .....|+++..+..|-++.+
T Consensus 258 ~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 258 IW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Ec--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 43 3344443321 111 11335666655556655553
No 290
>KOG0275|consensus
Probab=67.19 E-value=1.4e+02 Score=31.04 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=61.4
Q ss_pred CceEEEeccCCCceEEEEEc-----CC------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCC
Q psy8875 612 NAKIERAGMDGSHRNMVIVS-----DI------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSH 680 (734)
Q Consensus 612 ~~~I~~~~ldG~~~~~lv~~-----~l------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~ 680 (734)
..+|..+..||+.+.--..+ .+ ...+.+.+=+.+---+++-...+.|+.+++.|.-.+.+-++....+.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD 439 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence 35777777777644211110 00 11233333344444444545677899999999888877654333333
Q ss_pred CeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 681 PFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 681 P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
-..-.+ -++++|-.-- .+.+|.++..+|+..+.+..
T Consensus 440 Fi~~~lSpkGewiYcigE-D~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGE-DGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred eEEEEecCCCcEEEEEcc-CcEEEEEEeecCceeeeeec
Confidence 333333 5788887754 36788888889987776653
No 291
>KOG0295|consensus
Probab=66.99 E-value=1.8e+02 Score=31.01 Aligned_cols=226 Identities=12% Similarity=0.008 Sum_probs=107.9
Q ss_pred ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCC
Q psy8875 482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~ 559 (734)
...|+..+....++..-+ ........|+|+.. +++..+-..+-.|..-+++.-.. ...++ +.-.....+++=+.+.
T Consensus 129 d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 129 DATIKVFDTETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGD 206 (406)
T ss_pred CceEEEEEccchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHHHHHHHHhc-CcccceeeEEEEecCC
Confidence 556777666555442222 22345667777753 33333322222244444331000 01111 1122344555555543
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc--eEEEeccC-----CCceEEEEE--
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA--KIERAGMD-----GSHRNMVIV-- 630 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~--~I~~~~ld-----G~~~~~lv~-- 630 (734)
.| .+.+....|....++.....-.+.+...+.+-++|. ..|.|+-+-.. .. ++|..... +...+-.+.
T Consensus 207 ~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~-~DGti~As~s~-dqtl~vW~~~t~~~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 207 HI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN-QDGTIIASCSN-DQTLRVWVVATKQCKAELREHEHPVECI 283 (406)
T ss_pred ee-eecccccceeEEecccceeEEeccCchHhEEEEEec-CCeeEEEecCC-CceEEEEEeccchhhhhhhccccceEEE
Confidence 22 234446788888888776655555556677888886 35667666532 22 33332211 111110000
Q ss_pred ---cCCCCceeEEEec---CCCeEEEEeCCCCeEEEEecCCCc-eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceE
Q psy8875 631 ---SDIKWPNGLTLDL---VQRRLYWVDAKLNEISSCDYNGGN-RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIY 702 (734)
Q Consensus 631 ---~~l~~P~glavD~---~~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~ 702 (734)
.....|. |.-.. ..+.+..+-+..+.|...++.... ..+|. ....+-.++++. +|+...+-+..+.|.
T Consensus 284 ~wap~~~~~~-i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 284 AWAPESSYPS-ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred EecccccCcc-hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 0111121 11000 011233333445566666665443 22232 346778899994 566666666777777
Q ss_pred EEeccCCCceEEEe
Q psy8875 703 KANKFTGDNLTAIT 716 (734)
Q Consensus 703 ~~~~~~G~~~~~l~ 716 (734)
..+..+++-.+++.
T Consensus 360 vwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 360 VWDLKNLQCMKTLE 373 (406)
T ss_pred EEEeccceeeeccC
Confidence 77766776665553
No 292
>KOG0288|consensus
Probab=66.04 E-value=2e+02 Score=31.19 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=44.6
Q ss_pred ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCC-CCCC-eEEEEE-CCEEEEEeCCCCceEEEeccCCCce
Q psy8875 636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQT-LSHP-FSISTF-EDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~-~~~P-~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
...|.+.+....|.-. ...+.+..+++.+...+..+..... ..+- ..+.+. ++.+..+-...++|+.-+.++|+..
T Consensus 344 vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred eeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 3455554444444444 5667888888887776666553221 1111 122332 3333344455677777777777777
Q ss_pred EEEec
Q psy8875 713 TAITG 717 (734)
Q Consensus 713 ~~l~~ 717 (734)
.++..
T Consensus 423 ~~l~~ 427 (459)
T KOG0288|consen 423 KVLSL 427 (459)
T ss_pred EEecc
Confidence 76653
No 293
>KOG0306|consensus
Probab=65.18 E-value=2.8e+02 Score=32.57 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=81.3
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR- 581 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~- 581 (734)
..+.++.+.|... +..+..-+.++..+.+|.-.....+....+ .+..|.|-+ ..+|.+|-+....|-+..+|-...
T Consensus 509 ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 509 DDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred ccEEEEEEcCCCc-EEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccC-CcCeEEeccCCCceEEeccccchhh
Confidence 4566777776443 333344455566666663222222222111 223444442 367888888877787777764433
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE--EEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV--IVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l--v~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
+.++ ..-.....+.+=| ..++|||- |..++|.+. ||.....+ +.........||+- .+|...++-+..+.|.
T Consensus 586 KS~f-AHdDSvm~V~F~P-~~~~FFt~-gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~-~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 586 KSFF-AHDDSVMSVQFLP-KTHLFFTC-GKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVS-PNGSFVVSSSHDKSIR 659 (888)
T ss_pred hhhh-cccCceeEEEEcc-cceeEEEe-cCcceEEee--chhhhhhheeeccchheeeeeEEc-CCCCeEEeccCCceeE
Confidence 2333 2333456677777 67899997 445666664 44433222 23344456778886 4554455555556665
Q ss_pred EEe
Q psy8875 660 SCD 662 (734)
Q Consensus 660 ~~~ 662 (734)
...
T Consensus 660 lwE 662 (888)
T KOG0306|consen 660 LWE 662 (888)
T ss_pred eee
Confidence 544
No 294
>KOG3567|consensus
Probab=65.18 E-value=2 Score=46.54 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=26.9
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
..+..|.||.+| .+|..|.+|...+.+......++
T Consensus 464 ~~fylphgl~~d-kdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 464 NLFYLPHGLSID-KDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred CceecCCcceec-CCCcEEeecccchhhhhcccccc
Confidence 346789999999 77888888888888777665543
No 295
>KOG0301|consensus
Probab=64.92 E-value=2.5e+02 Score=32.58 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=49.7
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.....+.+++.-+.. .|++-...+.|+...- +....++ ..-..-++|||+=..++ |.+-...+.|...+++|.
T Consensus 138 gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf-~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTF-SGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred CcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhh-ccchhheeeeEEecCCC--eEeecCCceEEEEeccCc
Confidence 344566777776543 8888877777766542 3322222 23456789999864444 445555689999999887
Q ss_pred ceEEEE
Q psy8875 580 MRKVLV 585 (734)
Q Consensus 580 ~~~~l~ 585 (734)
......
T Consensus 211 ~l~~~~ 216 (745)
T KOG0301|consen 211 VLLEMH 216 (745)
T ss_pred eeeeee
Confidence 655443
No 296
>KOG0645|consensus
Probab=63.91 E-value=1.8e+02 Score=29.86 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=82.3
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc---eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE-eCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE---RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA-NFE 577 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~---~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~-~ld 577 (734)
..+...+||++..+.|+-+-...++|+...+.++.. ++++-..-...++.+|.-|.++.|- +-+...++... +.+
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La-~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA-SASFDATVVIWKKED 92 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE-EeeccceEEEeecCC
Confidence 346889999987788888877778777777663222 2222122234677888876666333 33333333322 334
Q ss_pred CCceE-EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCce-EEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 578 GTMRK-VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHR-NMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 578 G~~~~-~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~-~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
+...- ..+++.-.....+|..+..++|--... ..+++.-..+ +... ..++....+-...++.-|..+.|+ +-+
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR--DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~-S~S 169 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSR--DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF-SCS 169 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeC--CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE-Eec
Confidence 44333 244566677889999876555544433 2444444443 3322 123334444455566654444333 333
Q ss_pred CCCeEEEE
Q psy8875 654 KLNEISSC 661 (734)
Q Consensus 654 ~~~~I~~~ 661 (734)
..+.|...
T Consensus 170 YDnTIk~~ 177 (312)
T KOG0645|consen 170 YDNTIKVY 177 (312)
T ss_pred cCCeEEEE
Confidence 33444333
No 297
>KOG0269|consensus
Probab=63.85 E-value=1.3e+02 Score=35.17 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=83.1
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
..+.+.-++|+..+-.|.++-...+.|.-.++..... ......+-..++.+++-+..++.|++-...+.+...+|.--.
T Consensus 132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD 210 (839)
T ss_pred hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence 4567788999999999999988888888888874332 333334667889999999999999998888999988876433
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR 625 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~ 625 (734)
+-.+.. ....--.+.+++.-++.|.+.-|....|..-+|.+...
T Consensus 211 r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 211 RCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred hHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 222110 11112245555555667777656556666666765443
No 298
>KOG0271|consensus
Probab=63.52 E-value=2.2e+02 Score=30.69 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=84.2
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVI 629 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv 629 (734)
.+++-+ ++...++-++..+++..+++.........+.-.+...|+..|.. ....+- ...+.|.-.+. .|+..-.-+
T Consensus 120 ~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG-~~dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 120 SVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASG-SKDGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred EEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhcc-ccCCeEEEecCCCCCcccccc
Confidence 455554 45666777878888888888777666666666777777777643 332222 12234433332 111111112
Q ss_pred EcCCCCceeEEEecC----CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEE---EECCEEEEEeCCCCceE
Q psy8875 630 VSDIKWPNGLTLDLV----QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIS---TFEDWLYWSDWQQKAIY 702 (734)
Q Consensus 630 ~~~l~~P~glavD~~----~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~---v~~~~lywtd~~~~~v~ 702 (734)
...-.+-++|++.+. ..+++.+-++.+.|..-+..+......++ .|-.+++ .-++-|..+-...++|.
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-----gHT~~VTCvrwGG~gliySgS~DrtIk 271 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-----GHTASVTCVRWGGEGLIYSGSQDRTIK 271 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-----cCccceEEEEEcCCceEEecCCCceEE
Confidence 223345567766433 33555566677777776666544444433 2333333 33333444555555555
Q ss_pred EEeccCCCceEEEec
Q psy8875 703 KANKFTGDNLTAITG 717 (734)
Q Consensus 703 ~~~~~~G~~~~~l~~ 717 (734)
......|...+.+.+
T Consensus 272 vw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 272 VWRALDGKLCRELKG 286 (480)
T ss_pred EEEccchhHHHhhcc
Confidence 555556766665543
No 299
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=63.50 E-value=2e+02 Score=30.30 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=79.0
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-eE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM-RK 582 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~-~~ 582 (734)
.+.+|.... .+.++.+. ..+.|++.. |+|..-+.++........+++.... +. |++-...+.+++..-.|.. -+
T Consensus 105 s~~~i~~l~-~~~~~l~~-~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~d-G~-~vavs~~G~~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 105 SPFGITALG-DGSAELAG-DRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSD-GR-YVAVSSRGNFYSSWDPGQTTWQ 179 (302)
T ss_dssp -EEEEEEEE-TTEEEEEE-TT--EEEES-STTSSEEEEE-S----EEEEEE-TT-S--EEEEETTSSEEEEE-TT-SS-E
T ss_pred CeeEEEEcC-CCcEEEEc-CCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCC-Cc-EEEEECcccEEEEecCCCccce
Confidence 445544332 34554443 457788754 6566655555444445555555433 33 3333344666665444532 23
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--cCC-CCcee-EEEecCCCeEEEEeCCCCeE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--SDI-KWPNG-LTLDLVQRRLYWVDAKLNEI 658 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~~l-~~P~g-lavD~~~~~LYw~D~~~~~I 658 (734)
..-.........|.+.+. +.|+.+.. .+.|...+... ....... ..+ ..-.+ |.|.+....-.|+-...+.|
T Consensus 180 ~~~r~~~~riq~~gf~~~-~~lw~~~~--Gg~~~~s~~~~-~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 180 PHNRNSSRRIQSMGFSPD-GNLWMLAR--GGQIQFSDDPD-DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp EEE--SSS-EEEEEE-TT-S-EEEEET--TTEEEEEE-TT-EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred EEccCccceehhceecCC-CCEEEEeC--CcEEEEccCCC-CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence 333334567788889875 66766663 36777766221 2222211 111 11111 33444555566777777777
Q ss_pred EEEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEE
Q psy8875 659 SSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYK 703 (734)
Q Consensus 659 ~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~ 703 (734)
.+..-.|+.=+..............|.+.. +..|+. -..+.|.|
T Consensus 256 ~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~ 300 (302)
T PF14870_consen 256 LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLR 300 (302)
T ss_dssp EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEE
T ss_pred EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEE
Confidence 776655655443322222233456666643 344443 23344444
No 300
>KOG1036|consensus
Probab=63.27 E-value=2e+02 Score=30.07 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=50.9
Q ss_pred eeeeee-ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee
Q psy8875 476 SLLFAR-KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV 554 (734)
Q Consensus 476 ~l~~~~-~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv 554 (734)
.|+++. +..++..+.....+...+.........+|.. ..++|.. ...+.|.+++++.+.. ..+. ......+.|..
T Consensus 27 ~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G-~~dg~vr~~Dln~~~~-~~ig-th~~~i~ci~~ 102 (323)
T KOG1036|consen 27 DLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTG-GLDGQVRRYDLNTGNE-DQIG-THDEGIRCIEY 102 (323)
T ss_pred cEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEe-ccCceEEEEEecCCcc-eeec-cCCCceEEEEe
Confidence 344443 3344444444444333333333445556643 3455544 4578899999985433 3332 23334455554
Q ss_pred eccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 555 DWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 555 D~~~~~lY~td~~~~~I~~~~ldG 578 (734)
-+. ....++-+..++|.+.+.-.
T Consensus 103 ~~~-~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 103 SYE-VGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ecc-CCeEEEcccCccEEEEeccc
Confidence 433 34455555567787777654
No 301
>KOG4649|consensus
Probab=63.24 E-value=1.8e+02 Score=29.69 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=17.0
Q ss_pred eEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875 594 SLALNPIDGWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 594 ~iavD~~~g~LYwtd~~~~~~I~~~~ld 621 (734)
+-+|++-.+.||++-.+ +++.+.+.+
T Consensus 140 sP~i~~g~~sly~a~t~--G~vlavt~~ 165 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITA--GAVLAVTKN 165 (354)
T ss_pred cceecCCCceEEEEecc--ceEEEEccC
Confidence 44677778889998753 455555443
No 302
>KOG3621|consensus
Probab=63.16 E-value=1.4e+02 Score=34.58 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=31.4
Q ss_pred CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc--CCCCCc-eeEEEeCCCCeEEEEe
Q psy8875 548 IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR--SYLDEP-RSLALNPIDGWMYWSD 608 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~--~~l~~P-~~iavD~~~g~LYwtd 608 (734)
.+..|+-+....++|.-|. .++|....|+... ..+.. .-+..+ .=+-||...++|.++.
T Consensus 126 rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s~~-~~~~~~q~il~~ds~IVQlD~~q~~LLVSt 187 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDS-QGKVVLTELDSRQ-AFLSKSQEILSEDSEIVQLDYLQSYLLVST 187 (726)
T ss_pred eEEEEEecccccEEeecCC-CceEEEEEechhh-hhccccceeeccCcceEEeecccceehHhh
Confidence 3456666656677888877 4777777776510 00000 011111 2345676677666654
No 303
>KOG0288|consensus
Probab=63.13 E-value=2.3e+02 Score=30.80 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=65.9
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC---ccceeeeccCC
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI---ADGLAVDWIYS 559 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~---p~glAvD~~~~ 559 (734)
..||-.+..+......++....+.+|+..+....|.-. .....+..+++.+...+......++.. -..+.+- ..+
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS-pd~ 399 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS-PDG 399 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeEEC-CCC
Confidence 34676776666666666666677888877655555444 455566666655222122221212111 1112222 223
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCC--ceeEEEeCCCCeEEEEe
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDE--PRSLALNPIDGWMYWSD 608 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~--P~~iavD~~~g~LYwtd 608 (734)
....+-+..++|++.++.+.....++.....+ ...++.+|....|.-++
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 33334445788888888877776666544444 45666666544444443
No 304
>KOG0283|consensus
Probab=63.11 E-value=3.1e+02 Score=32.31 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=53.2
Q ss_pred eeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC
Q psy8875 509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY 588 (734)
Q Consensus 509 ~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~ 588 (734)
|+.|..+.+..+....+++.--++....-..++. -...++.||+.|+..+-|++-+-.++|+..++.... |+....
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~D 449 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWND 449 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehh
Confidence 3444455566666666666655555222233332 235678999999999999998888888888776443 333322
Q ss_pred C-CCceeEEEeCC
Q psy8875 589 L-DEPRSLALNPI 600 (734)
Q Consensus 589 l-~~P~~iavD~~ 600 (734)
+ .-..++.+-|.
T Consensus 450 l~~lITAvcy~Pd 462 (712)
T KOG0283|consen 450 LRDLITAVCYSPD 462 (712)
T ss_pred hhhhheeEEeccC
Confidence 2 33455555554
No 305
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=62.88 E-value=1.7e+02 Score=32.38 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=33.3
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc----CC---------------CCCceeEEEeCCCCeEEEEe
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR----SY---------------LDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~----~~---------------l~~P~~iavD~~~g~LYwtd 608 (734)
+..|.|-...+.||++.+..+.|+..++.....-.++. ++ ...|+-|.+.....+||||.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 45666655689999999999999999986543332221 11 13567777777788899986
No 306
>KOG2055|consensus
Probab=61.58 E-value=2.6e+02 Score=30.88 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=15.2
Q ss_pred eEEEecCCCeEEEE-eCCCCeEEEEec----CCCceEEEE
Q psy8875 638 GLTLDLVQRRLYWV-DAKLNEISSCDY----NGGNRRLVL 672 (734)
Q Consensus 638 glavD~~~~~LYw~-D~~~~~I~~~~~----dG~~~~~i~ 672 (734)
.|++. .++. |+| -+..+.|-.++. .+++++.+.
T Consensus 392 s~~~S-~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 392 SLCIS-LNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred eeeec-CCCc-eEEeccCcceEEEeccchhhccCCCCchh
Confidence 34443 2444 444 345555555553 344555543
No 307
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=60.37 E-value=1.9e+02 Score=30.54 Aligned_cols=106 Identities=15% Similarity=0.069 Sum_probs=56.0
Q ss_pred ceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCce
Q psy8875 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNR 668 (734)
Q Consensus 592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~ 668 (734)
+.+|+. .+++|..+- ..+|....++... ......-... ...+.+...+++|++.|... .|..+.++ +...
T Consensus 91 V~ai~~--~~~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~~~~I~vgD~~~-sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 91 VTAICS--FNGRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVFKNYILVGDAMK-SVSLLRYDEENNKL 163 (321)
T ss_dssp EEEEEE--ETTEEEEEE---TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEETTEEEEEESSS-SEEEEEEETTTE-E
T ss_pred ceEhhh--hCCEEEEee---cCEEEEEEccCcccchhhheecce-EEEEEEeccccEEEEEEccc-CEEEEEEEccCCEE
Confidence 445554 578866665 3577777776665 3322222221 24555666789999999754 44444444 3334
Q ss_pred EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCC-ceEEEe
Q psy8875 669 RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQK-AIYKAN 705 (734)
Q Consensus 669 ~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~-~v~~~~ 705 (734)
..+... ....+..++.+. ++.+..+|...+ .+++.+
T Consensus 164 ~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 164 ILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 444332 222334555553 458888887643 234444
No 308
>KOG2055|consensus
Probab=60.25 E-value=2.7e+02 Score=30.71 Aligned_cols=196 Identities=7% Similarity=-0.012 Sum_probs=81.5
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC--CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE--DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~--~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
...+..|.|++....|.++.. .+.+..+.+++.... .+..- .-......++-+.+....++.....-.+..+|...
T Consensus 213 ~~~I~sv~FHp~~plllvaG~-d~~lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGL-DGTLRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecC-CCcEEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 446677888876666655543 444444444532221 11110 00112233333333323333333444555555322
Q ss_pred ceEEEEc-CCCC--CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 580 MRKVLVR-SYLD--EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 580 ~~~~l~~-~~l~--~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
....+-. .+.. .-+-..|.+...+|- -.|.++.|....+.......-+ .--....+++++..+ +..|+-...+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia--~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSds-k~l~~~~~~G 366 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIA--IAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDS-KELLASGGTG 366 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEE--EcccCceEEeehhhhhhhhhee-eeccEEeeEEEecCC-cEEEEEcCCc
Confidence 2111110 0011 122344444443222 2234455555443221111000 001123567777444 5556666677
Q ss_pred eEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEE
Q psy8875 657 EISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~ 704 (734)
.|+..++.-.......... ..-+...|++ .++.++.+-...+-|...
T Consensus 367 eV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred eEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEe
Confidence 8888887654322111111 1224445554 344544555555544333
No 309
>KOG4532|consensus
Probab=59.24 E-value=2.2e+02 Score=29.27 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=80.4
Q ss_pred cceeeeeeccceEEeecCCCceEEEecCC-cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875 474 HASLLFARKHDIRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL 552 (734)
Q Consensus 474 ~~~l~~~~~~~I~~i~l~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl 552 (734)
.+.++-++++.+..+.+++......+... -....+++++....+ .+-....+|+++.++..+...+.+......-.|.
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~-~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWG-SSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceE-EEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 34555667777777777665443333211 224556666533333 2323456788888874443222222222233456
Q ss_pred eeeccCCcEEEEeC-CCCeEEEEeCC--CCceEEEEcCCCCCce----eEEEeC--CCCeEEEEecCCCceEEEecc-CC
Q psy8875 553 AVDWIYSHIYWTDA-HKNTIELANFE--GTMRKVLVRSYLDEPR----SLALNP--IDGWMYWSDWGQNAKIERAGM-DG 622 (734)
Q Consensus 553 AvD~~~~~lY~td~-~~~~I~~~~ld--G~~~~~l~~~~l~~P~----~iavD~--~~g~LYwtd~~~~~~I~~~~l-dG 622 (734)
.+-|..+.+-|+-. ..+.+.+.+.. +.-...+. ....+|+ ...+.+ ....||+++. .+.+.+.+| ++
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sEh--fs~~hv~D~R~~ 284 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISEH--FSRVHVVDTRNY 284 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEecC--cceEEEEEcccC
Confidence 66665555444432 23444433321 11111111 1111121 122221 1346888883 467777777 45
Q ss_pred CceEEEEE-cCC------CCceeEEEecCCCeEEEEe
Q psy8875 623 SHRNMVIV-SDI------KWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 623 ~~~~~lv~-~~l------~~P~glavD~~~~~LYw~D 652 (734)
.+.++++. .+. +.-.|-.+...+..+|++.
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCccccccc
Confidence 55554442 221 1223333444455666654
No 310
>KOG0299|consensus
Probab=57.83 E-value=2.9e+02 Score=30.37 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=104.1
Q ss_pred eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-----------------CCCCccceeeecc
Q psy8875 495 MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-----------------DKTIADGLAVDWI 557 (734)
Q Consensus 495 ~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-----------------~~~~p~glAvD~~ 557 (734)
+..+......+++|++.+...++|=+. .++.|.+-....|...+.++.. .......|||-..
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsas-k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSAS-KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecC-CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 445555666788888887666666544 3456666555444332222211 0112224666533
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 558 YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 558 ~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
++ .+.+-.....|.+.+.+.......+...-....++++-..+..||-+.....-+||.++-- .++.+...++.
T Consensus 214 gk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-----s~vetlyGHqd 287 (479)
T KOG0299|consen 214 GK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-----SYVETLYGHQD 287 (479)
T ss_pred Cc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-----HHHHHHhCCcc
Confidence 32 2222222455656666544433333344556677777666667777654322333333211 12222334444
Q ss_pred eE-EEecC-CCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 638 GL-TLDLV-QRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 638 gl-avD~~-~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
+| +||.. .+++.-+-... -+|+.+ . ...+.+... .-..+..+++.++.-|++-..++.|.-.....-+.+-
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi--~-eesqlifrg--~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKI--P-EESQLIFRG--GEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEec--c-ccceeeeeC--CCCCeeeEEEecccceeeccCCceEEEeeecccCcee
Confidence 43 23322 23332222122 244443 2 223333332 2456788888777788888878877766655555544
Q ss_pred EEec
Q psy8875 714 AITG 717 (734)
Q Consensus 714 ~l~~ 717 (734)
+...
T Consensus 363 ~~~~ 366 (479)
T KOG0299|consen 363 TSRL 366 (479)
T ss_pred Eeec
Confidence 4443
No 311
>KOG2321|consensus
Probab=57.81 E-value=2.7e+02 Score=31.71 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=43.3
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM 620 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l 620 (734)
-+.|+++..+--||.+-++ ..|+|.+|+ |.....+- ......+.+.|.+.+|.|-.-. ..+.++-.++
T Consensus 136 GRDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt--~~g~VEfwDp 204 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGT--EDGVVEFWDP 204 (703)
T ss_pred CccccccCCCccEEEeecC-cceEEEEccccccccccc-cccccceeeeecCccceEEecc--cCceEEEecc
Confidence 4578888788889988775 679999986 44433332 3334556778888877665432 2345554444
No 312
>KOG0296|consensus
Probab=57.30 E-value=2.7e+02 Score=29.78 Aligned_cols=197 Identities=9% Similarity=-0.027 Sum_probs=91.1
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
.....+++.+| +..+-.+-....+-+..++..|. ....+..-...+..+++. ..+.+..|--..+.|.+.....+..
T Consensus 64 ~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 64 TDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred CCceEEEEeCC-CCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEc-cCceEEEecCCCccEEEEEcccCce
Confidence 34556777777 55565555555554544444333 222222222333333333 1233333433467777766654433
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCC-CceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIK-WPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~-~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
+..+........=|--+| ++.++.+-. ..+.||...+.-.....+....-. --.|= +-+.++||.-... .+.|..
T Consensus 141 ~~~~~~e~~dieWl~WHp-~a~illAG~-~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~-f~pdGKr~~tgy~-dgti~~ 216 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHP-RAHILLAGS-TDGSVWMWQIPSQALCKVMSGHNSPCTCGE-FIPDGKRILTGYD-DGTIIV 216 (399)
T ss_pred EEEeecccCceEEEEecc-cccEEEeec-CCCcEEEEECCCcceeeEecCCCCCccccc-ccCCCceEEEEec-CceEEE
Confidence 333323334444455565 344444432 346777776655333233332211 11222 2234666655443 567777
Q ss_pred EecCCCc-eEEEEcCCCCCCCCeEE------EE---ECCEEEEEeCCCCceEEEe
Q psy8875 661 CDYNGGN-RRLVLYSPQTLSHPFSI------ST---FEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 661 ~~~dG~~-~~~i~~~~~~~~~P~gl------~v---~~~~lywtd~~~~~v~~~~ 705 (734)
.++.... ..++-+.......+.++ .+ .++.+|+....+++|..++
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 7755433 33332221111222222 22 3566777777777776664
No 313
>KOG0316|consensus
Probab=57.16 E-value=2.2e+02 Score=28.68 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=30.6
Q ss_pred CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCe-EEEE--ECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPF-SIST--FEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~-gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
++...++-+..+++.++++.-.... ...+.+|. .+.+ +++-+...-. ...|.-+++.+|+.++
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~-----sDy~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLS-----SDYFGHPITSVSFSKDGNCSLASSL-DSTLRLLDKETGKLLK 219 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceee-----hhhcCCcceeEEecCCCCEEEEeec-cceeeecccchhHHHH
Confidence 3334444444455555554322111 13566775 3444 3444444443 3566667777776543
No 314
>KOG0264|consensus
Probab=56.63 E-value=3e+02 Score=30.10 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=63.5
Q ss_pred EeCCCCeEEEEeCCCCce-------EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEEEEEcCCC
Q psy8875 564 TDAHKNTIELANFEGTMR-------KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNMVIVSDIK 634 (734)
Q Consensus 564 td~~~~~I~~~~ldG~~~-------~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~lv~~~l~ 634 (734)
+-...+.|...++..... ++++...-.....++..+....||-+- +...++..-++- -+.....+...-.
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-GDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-cCCCeEEEEEcCCCCCCCcccccccCC
Confidence 334466777777654332 344555566778888888888888776 333444443332 1122222223334
Q ss_pred CceeEEEecCCCeEEEEeCCCCeEEEEecCCCc
Q psy8875 635 WPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN 667 (734)
Q Consensus 635 ~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~ 667 (734)
..+-+++.+.++.|.-+-+..++|...++.--+
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence 457889999999888887777888887765433
No 315
>KOG0649|consensus
Probab=56.41 E-value=2.3e+02 Score=28.67 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
.+..+.++-+||.++.|+++- +.+.||.+++..|....++ ..-......++.-..++.|+ +-...+++++.++....
T Consensus 113 evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQK 189 (325)
T ss_pred cCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCccee-ecCCCccEEEEeccccc
Confidence 345678999999999999886 7788999999866544333 33334455555543444443 44556777777775544
Q ss_pred eEEEEc----CCC------CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEE
Q psy8875 581 RKVLVR----SYL------DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYW 650 (734)
Q Consensus 581 ~~~l~~----~~l------~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw 650 (734)
...++. ..+ .+.-++|++ ..+|.- |..+++....+-.+..+.++. +..|.- -+|...+. ..
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC---GgGp~lslwhLrsse~t~vfp--ipa~v~-~v~F~~d~-vl 260 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC---GGGPKLSLWHLRSSESTCVFP--IPARVH-LVDFVDDC-VL 260 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEecc--CceEEe---cCCCceeEEeccCCCceEEEe--ccccee-Eeeeecce-EE
Confidence 333331 112 222344443 233332 223444444455555544432 221211 12323333 33
Q ss_pred EeCCCCeEEEEecCCC
Q psy8875 651 VDAKLNEISSCDYNGG 666 (734)
Q Consensus 651 ~D~~~~~I~~~~~dG~ 666 (734)
+-...+.|....+.|.
T Consensus 261 ~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 261 IGGEGNHVQSYTLNGV 276 (325)
T ss_pred EeccccceeeeeeccE
Confidence 4444456777767664
No 316
>KOG0772|consensus
Probab=55.90 E-value=3.4e+02 Score=30.48 Aligned_cols=163 Identities=9% Similarity=-0.063 Sum_probs=85.7
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ 575 (734)
.+.+.+.++++|+..-++ ++......|...++.+... ...+....-.....|+.-+ ++..+.+-++...+.+.+
T Consensus 165 hgtk~Vsal~~Dp~GaR~-~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARF-VSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CCceEEEEeeecCCCcee-eeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeEEc
Confidence 345566788899855444 4444445566666653211 1122222344566777774 444455555667788888
Q ss_pred CCCCceEEEEcC------------CCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCC----CCcee
Q psy8875 576 FEGTMRKVLVRS------------YLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDI----KWPNG 638 (734)
Q Consensus 576 ldG~~~~~l~~~------------~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l----~~P~g 638 (734)
-||........+ ..........+|.+...|.|-... .-+||-.+---+.++|+..... ..|..
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 888765544432 122233344566666677765321 2356655444444555443211 22455
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 639 LTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
-++++. +.++-+--..+.|...++-+
T Consensus 323 C~~nrd-g~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 323 CAWNRD-GKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred eecCCC-cchhhhcccCCceeeeecCC
Confidence 566643 44444444556777666533
No 317
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=55.90 E-value=2.3e+02 Score=28.50 Aligned_cols=151 Identities=11% Similarity=0.020 Sum_probs=73.8
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEEeC--CC-----CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELANF--EG-----TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA 618 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~l--dG-----~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~ 618 (734)
...-.-|+.-+ ++.||.+... .+++.+. .+ ...+.|....-..-..|++|+ +|.||-... .++|+|.
T Consensus 33 w~~~~~i~~~P-~g~lY~I~~~--~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~-~G~LYaV~~--~G~lyR~ 106 (229)
T PF14517_consen 33 WNNFRDIAAGP-NGRLYAIRND--GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDP-TGVLYAVTP--DGKLYRH 106 (229)
T ss_dssp -TT-SEEEE-T-TS-EEEEETT--EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-T-TS-EEEEET--T-EEEEE
T ss_pred ccccceEEEcC-CceEEEEECC--ceEEecCCccCcccccccCcccccCcccceeEEEecC-CccEEEecc--ccceeec
Confidence 34445566654 6777777753 6666521 11 123344444344556899997 799998773 4678776
Q ss_pred ccCCCc--------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE-ecCCC-----ceEEEEcCCCCCCCCeEE
Q psy8875 619 GMDGSH--------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC-DYNGG-----NRRLVLYSPQTLSHPFSI 684 (734)
Q Consensus 619 ~ldG~~--------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~-~~dG~-----~~~~i~~~~~~~~~P~gl 684 (734)
...... .+.+..........|-.+ .++.||..+... ++++. ..++. ....++... ....+.-|
T Consensus 107 ~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~-~~GvLY~i~~dg-~~~~~~~p~~~~~~W~~~s~~v~~~-gw~~~~~i 183 (229)
T PF14517_consen 107 PRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAG-PNGVLYAITPDG-RLYRRYRPDGGSDRWLSGSGLVGGG-GWDSFHFI 183 (229)
T ss_dssp S---STT--HHH-HSEEEE-SSGGGEEEEEE--TTS-EEEEETTE--EEEE---SSTT--HHHH-EEEESS-SGGGEEEE
T ss_pred cCCCccCcchhhccceecccCCCccceEEEeC-CCccEEEEcCCC-ceEEeCCCCCCCCccccccceeccC-CcccceEE
Confidence 553211 233435666666777776 688999998654 56655 44443 233343321 22335556
Q ss_pred EE-ECCEEEEEeCCCCceEEEec
Q psy8875 685 ST-FEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 685 ~v-~~~~lywtd~~~~~v~~~~~ 706 (734)
.. .++.||+.+. ++.|+|-..
T Consensus 184 ~~~~~g~L~~V~~-~G~lyr~~~ 205 (229)
T PF14517_consen 184 FFSPDGNLWAVKS-NGKLYRGRP 205 (229)
T ss_dssp EE-TTS-EEEE-E-TTEEEEES-
T ss_pred eeCCCCcEEEEec-CCEEeccCC
Confidence 55 4568888843 477776543
No 318
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.73 E-value=4.6e+02 Score=31.65 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=39.1
Q ss_pred eEEEecCCCeEEEEeC-----------------CCCeEEEEecCCCceEEEEcCC-------CCCCCCeEEEE--ECC--
Q psy8875 638 GLTLDLVQRRLYWVDA-----------------KLNEISSCDYNGGNRRLVLYSP-------QTLSHPFSIST--FED-- 689 (734)
Q Consensus 638 glavD~~~~~LYw~D~-----------------~~~~I~~~~~dG~~~~~i~~~~-------~~~~~P~gl~v--~~~-- 689 (734)
.+++|+..+.|||--. ..+.|..+|.+....+=..+.. .....|.=+.+ .++
T Consensus 379 ~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~ 458 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTT 458 (764)
T ss_pred ceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcE
Confidence 4688888888888421 2345666666544443333210 01112432333 134
Q ss_pred --EEEEEeCCCCceEEEeccCCCceEE
Q psy8875 690 --WLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 690 --~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
.||.. .+++.++.+++.+|+.+..
T Consensus 459 ~~~v~~~-~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 459 VPALVAP-TKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred eeEEEEE-CCCCEEEEEECCCCCEEee
Confidence 34433 3456677777777765544
No 319
>PRK13684 Ycf48-like protein; Provisional
Probab=54.22 E-value=3e+02 Score=29.39 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=85.8
Q ss_pred CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEEEEcCCCCCce
Q psy8875 515 GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKVLVRSYLDEPR 593 (734)
Q Consensus 515 ~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~l~~~~l~~P~ 593 (734)
+.+|.+ ...+.|++.. |+|..-+.+.........++++++. ..||+-...+.|++...+| ..-+.+.........
T Consensus 143 ~~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~--g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~ 218 (334)
T PRK13684 143 GTAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPD--GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ 218 (334)
T ss_pred Ccceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCC--CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce
Confidence 344444 3456677654 4454433332222334566777643 3455544457777764344 333444444456778
Q ss_pred eEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEc---CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875 594 SLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVS---DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669 (734)
Q Consensus 594 ~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~---~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 669 (734)
+|++.+. +.++... ..+.|.....| |..-+.+... ......+|++.+ ++.+| +-...+.|.+..-.|..=+
T Consensus 219 ~i~~~~~-g~~~~vg--~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~-~~G~~G~v~~S~d~G~tW~ 293 (334)
T PRK13684 219 SMGFQPD-GNLWMLA--RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIW-AGGGNGTLLVSKDGGKTWE 293 (334)
T ss_pred eeeEcCC-CCEEEEe--cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEE-EEcCCCeEEEeCCCCCCCe
Confidence 8888764 5565554 23555443344 4332322211 112234566653 45554 4445566665443344333
Q ss_pred EEEcCCCCCC-CCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875 670 LVLYSPQTLS-HPFSISTFEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 670 ~i~~~~~~~~-~P~gl~v~~~~lywtd~~~~~v~~~~ 705 (734)
.+.. ...+. .-..+.+..+.-.|+--..+.|.+.+
T Consensus 294 ~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 294 KDPV-GEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred ECCc-CCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 3221 01122 22345544333345555556666553
No 320
>KOG4532|consensus
Probab=53.53 E-value=2.7e+02 Score=28.62 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=62.1
Q ss_pred ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE-EcCCCCceeEEEecCCCeEEEE-eCCCC--eEEEEecCCCc
Q psy8875 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI-VSDIKWPNGLTLDLVQRRLYWV-DAKLN--EISSCDYNGGN 667 (734)
Q Consensus 592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv-~~~l~~P~glavD~~~~~LYw~-D~~~~--~I~~~~~dG~~ 667 (734)
-..+++++...++-.. |..++|.+..+|-.....+- ...-..-.|+.....+..+-+| -...+ .|+-++..++-
T Consensus 161 ~ns~~~snd~~~~~~V--gds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSV--GDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEe--cCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 5778888765554443 45678888877655432221 1111112344443333333333 23333 45555555554
Q ss_pred eEEEEcCCCCCCCCeE-EEE--E-----CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 668 RRLVLYSPQTLSHPFS-IST--F-----EDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 668 ~~~i~~~~~~~~~P~g-l~v--~-----~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
...+-.. .++|.| +-+ | -+.||+++-. ..+..++..++.+.++|.-
T Consensus 239 m~~~sst---rp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 239 MAEISST---RPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred hhhhccc---CCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCceeeEEec
Confidence 4443321 223322 111 2 3667777755 5678888889988887753
No 321
>KOG1445|consensus
Probab=53.17 E-value=3e+02 Score=31.64 Aligned_cols=154 Identities=11% Similarity=0.068 Sum_probs=81.6
Q ss_pred cceEEEeeecc-CCeEEEE-EeCCCcEEEEecCCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875 503 KSATAIDFVFR-TGMIFWS-DISEKKIYKAPIDEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576 (734)
Q Consensus 503 ~~~~~i~~d~~-~~~lyw~-d~~~~~I~~~~l~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l 576 (734)
..+..+.||+- ..+|-++ |-..-+|+|+..++... .+.++......+..|.+.+..-.+..+-+...+|...++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 34556666653 2344443 22233566766654322 233334455667777777777777666666788888888
Q ss_pred CCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 577 EGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 577 dG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
.....+.-+.+......+||..|... +.-|- .+.++|.+......... +.. -..|.| ..+-||.|+-.+ +
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtV-cKDg~~rVy~Prs~e~p-v~E--g~gpvg----tRgARi~wacdg-r 777 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGR-RIATV-CKDGTLRVYEPRSREQP-VYE--GKGPVG----TRGARILWACDG-R 777 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCc-ceeee-ecCceEEEeCCCCCCCc-ccc--CCCCcc----CcceeEEEEecC-c
Confidence 55443333335566778888877543 33332 23456666554332221 211 122433 245677777432 3
Q ss_pred eEEEEecCCC
Q psy8875 657 EISSCDYNGG 666 (734)
Q Consensus 657 ~I~~~~~dG~ 666 (734)
.|..+.++-.
T Consensus 778 ~viv~Gfdk~ 787 (1012)
T KOG1445|consen 778 IVIVVGFDKS 787 (1012)
T ss_pred EEEEeccccc
Confidence 4455555543
No 322
>KOG1334|consensus
Probab=52.84 E-value=1.4e+02 Score=33.00 Aligned_cols=62 Identities=8% Similarity=-0.028 Sum_probs=41.2
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CCC-----CCceeEEEeCCCCeEEEEe
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYL-----DEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~l-----~~P~~iavD~~~g~LYwtd 608 (734)
....-|||++.+-+-|.+....+.+.-+++.-......+. ... -.-..||+||.+-+.|-+.
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 4566799999999999888887777777765443332221 111 1346899999877666654
No 323
>KOG1524|consensus
Probab=52.81 E-value=3.5e+02 Score=30.56 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=56.1
Q ss_pred eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc-EEEEeCCCCeEEE
Q psy8875 495 MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH-IYWTDAHKNTIEL 573 (734)
Q Consensus 495 ~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~-lY~td~~~~~I~~ 573 (734)
...++.+...+..++|++..+.+.+.... .|+.-.|. .. ..++. -....-.-|.+||.... |..+-...-+..+
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~-~n-~k~i~-WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLA-AN-SKIIR-WRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeecc-cc-cceeE-EeccCcEEEEeecCccccceeecCCceeEEe
Confidence 34455566778899999999988887643 34433333 11 11111 11122234677887644 3333322223333
Q ss_pred EeCCCCceEEEEcCC--CCCceeEEEeCCCCeEEEEe
Q psy8875 574 ANFEGTMRKVLVRSY--LDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 574 ~~ldG~~~~~l~~~~--l~~P~~iavD~~~g~LYwtd 608 (734)
.+--|. .|+... -....++|..|..-++.|+-
T Consensus 213 WD~~G~---~Lf~S~~~ey~ITSva~npd~~~~v~S~ 246 (737)
T KOG1524|consen 213 WDAQGA---NLFTSAAEEYAITSVAFNPEKDYLLWSY 246 (737)
T ss_pred ecccCc---ccccCChhccceeeeeeccccceeeeee
Confidence 333332 233221 23457899999877777764
No 324
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=52.72 E-value=31 Score=31.57 Aligned_cols=53 Identities=30% Similarity=0.797 Sum_probs=31.6
Q ss_pred CCCC-CCccccccc--CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC--CCCcccccCcCCCCce
Q psy8875 79 DCPD-GVDEKKCQK--RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK--NRTCQASEFRCGNNRC 147 (734)
Q Consensus 79 dC~d-g~de~~C~~--~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~--~~~C~~~~f~C~~g~C 147 (734)
.|.| .+|..+|.. ..|+.++.-|. |+|++.. +|..+|. ...|..++ .|..|.|
T Consensus 76 ~Cvdv~~d~~nCG~Cg~~C~~g~~cC~---G~Cvd~~------------~d~~~CG~Cg~~C~~G~-~C~~G~C 133 (136)
T PF04885_consen 76 KCVDVSSDRNNCGACGNKCPYGQTCCG---GQCVDLN------------SDPRHCGACGNKCPPGQ-KCVYGMC 133 (136)
T ss_pred cCCccCCCccccHhhcCCCCCCceecC---CEeECCC------------CCccccCCCCCcCCCcC-CcCCeEC
Confidence 4555 447777763 56777665553 6888877 5666663 23455443 4555555
No 325
>KOG3545|consensus
Probab=52.43 E-value=1.9e+02 Score=29.29 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=72.3
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceE--EEE-cCCCCCc----------eeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRK--VLV-RSYLDEP----------RSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~--~l~-~~~l~~P----------~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
-+|.+|+-...+..|.+.+|...... .++ ......+ ..+|||...=++-.+...+.+.|..+.+|-.
T Consensus 76 ynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~ 155 (249)
T KOG3545|consen 76 YNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPE 155 (249)
T ss_pred EcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHH
Confidence 36888988888888989888763221 111 2223334 6899996543333333344567777777763
Q ss_pred ceEEEE--EcCCC---CceeEEEecCCCeEEEEeCCCC---eE-EEEecC-CCceEEEEcCCCCCCCCeEEEE--ECCEE
Q psy8875 624 HRNMVI--VSDIK---WPNGLTLDLVQRRLYWVDAKLN---EI-SSCDYN-GGNRRLVLYSPQTLSHPFSIST--FEDWL 691 (734)
Q Consensus 624 ~~~~lv--~~~l~---~P~glavD~~~~~LYw~D~~~~---~I-~~~~~d-G~~~~~i~~~~~~~~~P~gl~v--~~~~l 691 (734)
..++.- ...+. .-+++-| =|.||.+++.+. .| ..++.. |+..++-+.-.....+-..|.. .+..|
T Consensus 156 tl~~e~tW~T~~~k~~~~~aF~i---CGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~L 232 (249)
T KOG3545|consen 156 TLEVERTWNTTLPKRSAGNAFMI---CGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRL 232 (249)
T ss_pred HhheeeeeccccCCCCcCceEEE---eeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCccccee
Confidence 322211 11221 1234444 578999986433 34 344443 3332222211111122223333 36678
Q ss_pred EEEeCCCCceEEEe
Q psy8875 692 YWSDWQQKAIYKAN 705 (734)
Q Consensus 692 ywtd~~~~~v~~~~ 705 (734)
|. |.++.++..+
T Consensus 233 Y~--wdng~~l~y~ 244 (249)
T KOG3545|consen 233 YA--WDNGHQLTYN 244 (249)
T ss_pred eE--ecCCcEEEEE
Confidence 87 4455555543
No 326
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=52.25 E-value=61 Score=23.04 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=25.0
Q ss_pred CCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 680 ~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
...+|++.++++|++++..+ |..++-.+-..-+++
T Consensus 3 ~a~~v~v~g~yaYva~~~~G-l~IvDISnPs~P~~v 37 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNG-LVIVDISNPSNPVLV 37 (42)
T ss_pred eEEEEEEECCEEEEEeCCCC-EEEEECCCCCCCEEE
Confidence 34678999999999988744 667776665554444
No 327
>KOG3881|consensus
Probab=52.23 E-value=1.1e+02 Score=32.77 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=51.2
Q ss_pred eEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE-EcCCCCCcee
Q psy8875 516 MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL-VRSYLDEPRS 594 (734)
Q Consensus 516 ~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l-~~~~l~~P~~ 594 (734)
.-|.+-...+.+..++...+.....-+...-.....+++++.++.||+++.. +.|..+++.+...... +.+-...+++
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeeccccCCccCCcce
Confidence 4444444455566655542222222222233446688999999999999874 5566655554432222 3344568999
Q ss_pred EEEeCCCCeEE
Q psy8875 595 LALNPIDGWMY 605 (734)
Q Consensus 595 iavD~~~g~LY 605 (734)
|.++|...+|-
T Consensus 296 ih~hp~~~~la 306 (412)
T KOG3881|consen 296 IHCHPTHPVLA 306 (412)
T ss_pred EEEcCCCceEE
Confidence 99998654443
No 328
>KOG0271|consensus
Probab=52.02 E-value=3.4e+02 Score=29.31 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=52.0
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~ 580 (734)
...++.+.|.| ++....+..+...++--+++..+.. .....--..+..||.-|. ++...+-...+.|...+.. |..
T Consensus 115 ~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~-~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 115 GEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPL-FTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcc-eeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCc
Confidence 34567788887 5666666666666666676643322 222223334444555443 3444555567788877753 222
Q ss_pred eEEEEcCCCCCceeEEEeCC
Q psy8875 581 RKVLVRSYLDEPRSLALNPI 600 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~ 600 (734)
.-.-+.+.-++..+|+..|.
T Consensus 192 ~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPL 211 (480)
T ss_pred ccccccCcccceeEEeeccc
Confidence 22222344566677776554
No 329
>KOG0294|consensus
Probab=51.72 E-value=3.1e+02 Score=28.81 Aligned_cols=210 Identities=14% Similarity=0.061 Sum_probs=103.8
Q ss_pred ccceEEeecCC-CceEEEecCCcceEEEeeeccCC--eEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccC
Q psy8875 482 KHDIRKISLDH-HEMTAIVNSTKSATAIDFVFRTG--MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY 558 (734)
Q Consensus 482 ~~~I~~i~l~~-~~~~~l~~~~~~~~~i~~d~~~~--~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~ 558 (734)
+..|+..++.. .+...++.....+.++-|++... +| .+-..++.|...+.. .....--+..-...+.+|+|.| +
T Consensus 62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~-~W~~~~slK~H~~~Vt~lsiHP-S 138 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVG-SWELLKSLKAHKGQVTDLSIHP-S 138 (362)
T ss_pred CCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe-eeecCCCcEEEEEcC-CeEEeeeecccccccceeEecC-C
Confidence 44566666643 23445555567788888875432 22 233345666655543 2211111222344588999995 5
Q ss_pred CcEEEEeCCCCeEEEEeC-CCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 559 SHIYWTDAHKNTIELANF-EGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 559 ~~lY~td~~~~~I~~~~l-dG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
++|-.+-.+.+.+...+| .|+...++ .--..+.-|..+|...+.++.- ..+|....++-......+... ..+.
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L~~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~A~v~~~i~~~-~r~l 212 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVL--NLKNKATLVSWSPQGDHFVVSG---RNKIDIYQLDNASVFREIENP-KRIL 212 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceee--ccCCcceeeEEcCCCCEEEEEe---ccEEEEEecccHhHhhhhhcc-ccce
Confidence 778888777788888887 34433222 2233455577776655555554 245555555433211111111 2233
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCC-CceEEEEcCCCCCCCCeEEEEEC---CEEEEEeCCCCceEEEe
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNG-GNRRLVLYSPQTLSHPFSISTFE---DWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG-~~~~~i~~~~~~~~~P~gl~v~~---~~lywtd~~~~~v~~~~ 705 (734)
-++++ .++.|.+.- ....|...+-|. .-...+..- -..--+|+++. .++.+|-...+.|..-+
T Consensus 213 ~~~~l-~~~~L~vG~-d~~~i~~~D~ds~~~~~~~~AH---~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 213 CATFL-DGSELLVGG-DNEWISLKDTDSDTPLTEFLAH---ENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eeeec-CCceEEEec-CCceEEEeccCCCccceeeecc---hhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 34443 344554442 234566555542 222222211 12223455433 35666655555544333
No 330
>KOG0650|consensus
Probab=51.72 E-value=52 Score=37.14 Aligned_cols=121 Identities=9% Similarity=0.104 Sum_probs=71.6
Q ss_pred EEecCCcceEEEeeeccCCeEEEEEe--CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 497 AIVNSTKSATAIDFVFRTGMIFWSDI--SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 497 ~l~~~~~~~~~i~~d~~~~~lyw~d~--~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
.++...+.+..|.|+-+..+|-.+-. .+..|+.-.|.....+ ..+...-..|..+++.+..-.||++.. ..|...
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiY 592 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIY 592 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEec--cceEEE
Confidence 34445566777888865554443322 2344554444422211 112223345777888888888998876 445555
Q ss_pred eCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 575 NFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 575 ~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
+|.-.. .+.+ ..+..+...++|+|....|+.... ..+|-..+||-+
T Consensus 593 dL~kqelvKkL-~tg~kwiS~msihp~GDnli~gs~--d~k~~WfDldls 639 (733)
T KOG0650|consen 593 DLSKQELVKKL-LTGSKWISSMSIHPNGDNLILGSY--DKKMCWFDLDLS 639 (733)
T ss_pred ehhHHHHHHHH-hcCCeeeeeeeecCCCCeEEEecC--CCeeEEEEcccC
Confidence 654322 1112 256678889999998888888763 357777777754
No 331
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=51.45 E-value=4.1e+02 Score=30.07 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=70.7
Q ss_pred CCeEEEEEe----CCCcEEEEecCCCCceEEEEeCCCCCccc--eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC
Q psy8875 514 TGMIFWSDI----SEKKIYKAPIDEGSERTVVIEEDKTIADG--LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS 587 (734)
Q Consensus 514 ~~~lyw~d~----~~~~I~~~~l~~g~~~~~~~~~~~~~p~g--lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~ 587 (734)
...||++.. ....++.++.+ |..+-.+. +..... +-. -.+|+|++... ..|..+++.|+.....-..
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~---~~~~~~~~~~~-l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~ 185 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLP---LDSGSDNSFKQ-LPNGNLLIGSG--NRLYEIDLLGKVIWEYDLP 185 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETT-S-EEEEE----GGGT--SSEEE--TTS-EEEEEB--TEEEEE-TT--EEEEEE--
T ss_pred CCcEEEEeCCCCCCCceEEEECCC-ccEEEEEc---cCccccceeeE-cCCCCEEEecC--CceEEEcCCCCEEEeeecC
Confidence 445666654 34456666665 44332221 111222 222 24677777665 6777888887754432211
Q ss_pred CC--CCceeEEEeCCCCeEEEEec------C-----CCceEEEeccCCCceEEEEEc-----------------------
Q psy8875 588 YL--DEPRSLALNPIDGWMYWSDW------G-----QNAKIERAGMDGSHRNMVIVS----------------------- 631 (734)
Q Consensus 588 ~l--~~P~~iavD~~~g~LYwtd~------~-----~~~~I~~~~ldG~~~~~lv~~----------------------- 631 (734)
.. ..=-.+...|....|..+.. . ....|..++.+|......-..
T Consensus 186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 10 01124455554444443331 0 013455555555433322100
Q ss_pred ---CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC
Q psy8875 632 ---DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS 674 (734)
Q Consensus 632 ---~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~ 674 (734)
+..+.|+|..|+..+.|+++-...+.|+.++...+...-++..
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 1134688999988999999999999999999776666656543
No 332
>KOG0284|consensus
Probab=50.64 E-value=2.4e+02 Score=30.65 Aligned_cols=156 Identities=10% Similarity=0.060 Sum_probs=82.0
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
..+..++|.+ ++..|.+-...+.|..-+........++ ..---.+..++-.+..+.|+.. +....|...+.......
T Consensus 181 eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasg-skDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 181 EAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASG-SKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhheeccCC-CCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEc-cCCceeEeecCCCcchh
Confidence 4678899988 7778888778888877776644444444 3333456666655554444433 33345555555332221
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE-EcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI-VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv-~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
.-+...-....++.+.+..++|. |- +....+.+.++. +..++.. ...-.....++..+....||.+-...+.|...
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Ll-t~-skD~~~kv~DiR-~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLL-TG-SKDQSCKVFDIR-TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeE-Ec-cCCceEEEEehh-HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence 11122233456777776553333 22 233455555443 1111111 11122344566666677777776666666555
Q ss_pred ecC
Q psy8875 662 DYN 664 (734)
Q Consensus 662 ~~d 664 (734)
.+.
T Consensus 335 ~v~ 337 (464)
T KOG0284|consen 335 VVG 337 (464)
T ss_pred ecc
Confidence 554
No 333
>KOG0646|consensus
Probab=50.56 E-value=3.9e+02 Score=29.55 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCeEEEEeCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-------------
Q psy8875 559 SHIYWTDAHKNTIELANFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH------------- 624 (734)
Q Consensus 559 ~~lY~td~~~~~I~~~~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~------------- 624 (734)
.+||-+ +....|.+.++.+... ..++ .-..+.+++|||....+|.-. ..+.|+..++-+..
T Consensus 189 ~rl~Ta-S~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 189 ARLYTA-SEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred ceEEEe-cCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecC--CcceEEeeehhcCCccccccccccccc
Confidence 344433 3345666666654422 1111 234678999999999999876 34778777664332
Q ss_pred ----eEEEEEcCC-CCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 625 ----RNMVIVSDI-KWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 625 ----~~~lv~~~l-~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
..+++...- ....-|||. ..+.|..+-...++|...+.
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAIS-TDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccceeeeeccccCCcceeEEEEe-cCccEEEeeCCCCCEEEEec
Confidence 111211111 134457776 45555556555566655554
No 334
>KOG2110|consensus
Probab=50.47 E-value=3.5e+02 Score=29.02 Aligned_cols=149 Identities=10% Similarity=0.017 Sum_probs=74.4
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCcee-EEEeCCCC--eEEEEecCCCceEEEeccCCCceEEE
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS-LALNPIDG--WMYWSDWGQNAKIERAGMDGSHRNMV 628 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~-iavD~~~g--~LYwtd~~~~~~I~~~~ldG~~~~~l 628 (734)
|+|--..++|.+.-. ..|++.++..-....-+...-.+|+| +|+.+..+ +|-+-+....+.|...+..--.....
T Consensus 91 L~VrmNr~RLvV~Le--e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLE--ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred EEEEEccceEEEEEc--ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 334333445555443 34777777543221111122235552 34444444 44444434456777777654433334
Q ss_pred EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe--cCCCceEEEEcCCCCCCCCeEEEEECCEEEE-EeCCCCceEEE
Q psy8875 629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD--YNGGNRRLVLYSPQTLSHPFSISTFEDWLYW-SDWQQKAIYKA 704 (734)
Q Consensus 629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~--~dG~~~~~i~~~~~~~~~P~gl~v~~~~lyw-td~~~~~v~~~ 704 (734)
+...-..-..||++ ..|.|.-+-+..++|.|+- .+|.....+-.+. ....-.+|++..+.-|. +...++.|..+
T Consensus 169 I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 169 INAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIF 245 (391)
T ss_pred EEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEE
Confidence 44333345689997 5666666767777766655 4455554444321 12234567774433333 34445555444
No 335
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=49.27 E-value=10 Score=26.10 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=15.2
Q ss_pred CccccCC-CcceeecCCCcEec
Q psy8875 401 HKCVDLP-VGYMCECNEGYKLS 421 (734)
Q Consensus 401 ~~C~~~~-~~~~C~C~~G~~l~ 421 (734)
+.|.+.. |.++|.|..||+..
T Consensus 11 A~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 11 AGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp EEEEEETTSEEEEEE-TTEEEE
T ss_pred cccEEcCCCCEEEEeeCCcccc
Confidence 3577765 88889999998874
No 336
>KOG1408|consensus
Probab=49.10 E-value=1.6e+02 Score=34.33 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=78.1
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCce--EEEeccCCCc
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK--IERAGMDGSH 624 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~--I~~~~ldG~~ 624 (734)
....|||+++..+.+-+-- .-.|.+++.+--....|+.........+|+.+..++|---+.|..+. +|.....|..
T Consensus 38 ~~~~gLa~~p~Sgl~aYpA--GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV 115 (1080)
T KOG1408|consen 38 KNANGLASVPCSGLCAYPA--GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVV 115 (1080)
T ss_pred ecCCcccccccccceeecc--CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccch
Confidence 4567899999988765432 24566667766556667766667778999987655554444444444 4444444422
Q ss_pred eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE-----EEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC
Q psy8875 625 RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS-----SCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699 (734)
Q Consensus 625 ~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~-----~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~ 699 (734)
.+ ++. .-+...-+|+.+.+.+|.-+-.....|. ++++.+...++ ...-.++++.++--|+...++.
T Consensus 116 AE-fvd-HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnki-------ss~Vsav~fsEdgSYfvT~gnr 186 (1080)
T KOG1408|consen 116 AE-FVD-HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKI-------SSVVSAVAFSEDGSYFVTSGNR 186 (1080)
T ss_pred hh-hhh-ccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccc-------ceeEEEEEEccCCceeeeeeee
Confidence 21 221 2223455667655555443333333332 22333322221 1123356666666666666655
Q ss_pred ceEEEe
Q psy8875 700 AIYKAN 705 (734)
Q Consensus 700 ~v~~~~ 705 (734)
.|.--.
T Consensus 187 Hvk~wy 192 (1080)
T KOG1408|consen 187 HVKLWY 192 (1080)
T ss_pred eEEEEE
Confidence 554333
No 337
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=48.57 E-value=1.3e+02 Score=34.20 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=58.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCC----------------CcEEEEecCCCCc-------eEEEEe--------------
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISE----------------KKIYKAPIDEGSE-------RTVVIE-------------- 543 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~----------------~~I~~~~l~~g~~-------~~~~~~-------------- 543 (734)
.+.+|..|++.+.++.+|++-..+ +.|+|....++.. ...+..
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 356899999999999999986543 3588877654311 111111
Q ss_pred --CCCCCccceeeeccCCcEEEEeCCCC----eEE-EEe---CCCCc---eEEEEcCCCCCceeEEEeCCCCeEEEEe
Q psy8875 544 --EDKTIADGLAVDWIYSHIYWTDAHKN----TIE-LAN---FEGTM---RKVLVRSYLDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 544 --~~~~~p~glAvD~~~~~lY~td~~~~----~I~-~~~---ldG~~---~~~l~~~~l~~P~~iavD~~~g~LYwtd 608 (734)
..+..|.+|++|+.++...-||.... ++. +.. .++.. ++.+.........|+++.|....||+.-
T Consensus 495 ~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 495 NANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred ccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 11445999999966544444454321 111 111 12211 1112212223455777777666677654
No 338
>KOG1273|consensus
Probab=47.10 E-value=3.7e+02 Score=28.31 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=55.9
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC---CC-CCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE---DK-TIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~---~~-~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.+.+.-|+++....+++-.....-+.+.+.. ...+++... .+ ..+.-..+|..++.| ++-...+.|.+.+....
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETL 185 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecC-CceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchh
Confidence 3456677887777777665544444444442 122222111 01 112223466444444 45555788888877654
Q ss_pred ceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875 580 MRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA 618 (734)
Q Consensus 580 ~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~ 618 (734)
....-. .......+.|-|. .+|..+..+.. ...|...
T Consensus 186 e~vas~rits~~~IK~I~~s-~~g~~liiNts-DRvIR~y 223 (405)
T KOG1273|consen 186 ECVASFRITSVQAIKQIIVS-RKGRFLIINTS-DRVIRTY 223 (405)
T ss_pred eeeeeeeechheeeeEEEEe-ccCcEEEEecC-CceEEEE
Confidence 322211 1223566778775 45666666643 2444443
No 339
>KOG1587|consensus
Probab=47.08 E-value=5.1e+02 Score=29.92 Aligned_cols=155 Identities=10% Similarity=0.054 Sum_probs=83.6
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE-EEc-------CCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV-LVR-------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM 620 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~-l~~-------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l 620 (734)
...+++-+..-+.|+.-...|.|+++...|..... ++. ......+.|...|..-.+|-+-..-..+||.-..
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC
Confidence 34566666666778888888999998776655443 111 1223345555666655555553212245554431
Q ss_pred CCCceEEEE--EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC
Q psy8875 621 DGSHRNMVI--VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ 698 (734)
Q Consensus 621 dG~~~~~lv--~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~ 698 (734)
. ...++ ........++++.+..-.||.+-...+.|...||.-.....+.. .+.. +..-.++.|+..
T Consensus 430 ~---~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s------~~~~-~~~l~~~~~s~~-- 497 (555)
T KOG1587|consen 430 I---ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS------QKVC-SPALTRVRWSPN-- 497 (555)
T ss_pred C---CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc------cccc-ccccceeecCCC--
Confidence 1 11111 11223356778877777788777777778777766555444432 1222 223345666553
Q ss_pred CceEEEeccCCCceEEEe
Q psy8875 699 KAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 699 ~~v~~~~~~~G~~~~~l~ 716 (734)
+++..+....|. +.++.
T Consensus 498 g~~lavGd~~G~-~~~~~ 514 (555)
T KOG1587|consen 498 GKLLAVGDANGT-THILK 514 (555)
T ss_pred CcEEEEecCCCc-EEEEE
Confidence 466667665554 34443
No 340
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=46.57 E-value=16 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=15.3
Q ss_pred CCceeEEEecCCCeEEEEeC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~ 653 (734)
..+++|++| ..+.||++=.
T Consensus 13 ~~~~~IavD-~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVD-SNGNIYVTGY 31 (38)
T ss_pred eeEEEEEEC-CCCCEEEEEe
Confidence 458999999 6678999854
No 341
>KOG1334|consensus
Probab=46.56 E-value=1.2e+02 Score=33.47 Aligned_cols=65 Identities=8% Similarity=0.004 Sum_probs=40.5
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC-----CccceeeeccCCcEEEEeC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT-----IADGLAVDWIYSHIYWTDA 566 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~-----~p~glAvD~~~~~lY~td~ 566 (734)
...+.-+++++...+.|.+....+.++-+++..+...+.+...... ....||+|+.+-+.|-+..
T Consensus 232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG 301 (559)
T KOG1334|consen 232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG 301 (559)
T ss_pred cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC
Confidence 3345556777777788888777777777777654443333322222 3457899988776665543
No 342
>KOG3545|consensus
Probab=46.25 E-value=2.5e+02 Score=28.44 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=72.1
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCce--EEEEeCCCCCc----------cceeeeccCCc-EEEEeCCCCeEEEEeCCCCc
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSER--TVVIEEDKTIA----------DGLAVDWIYSH-IYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~--~~~~~~~~~~p----------~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~ 580 (734)
.+.+|+--.....|.+.++..+... +.+-..+...+ ..+|||..+=. ||-|....+.|.++.|+-..
T Consensus 77 nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~t 156 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPET 156 (249)
T ss_pred cceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHH
Confidence 6788888777788999988753331 11112223333 57899954322 56666677888888887633
Q ss_pred eEEEE--cCCCCC---ceeEEEeCCCCeEEEEecCC--CceE-EEeccC-CCceEEE--EEcCCCCceeEEEecCCCeEE
Q psy8875 581 RKVLV--RSYLDE---PRSLALNPIDGWMYWSDWGQ--NAKI-ERAGMD-GSHRNMV--IVSDIKWPNGLTLDLVQRRLY 649 (734)
Q Consensus 581 ~~~l~--~~~l~~---P~~iavD~~~g~LYwtd~~~--~~~I-~~~~ld-G~~~~~l--v~~~l~~P~glavD~~~~~LY 649 (734)
..+.. ...+.+ -.++.| =|.||.++... ...| +..+.. |+...+. .......-..|--.+...+||
T Consensus 157 l~~e~tW~T~~~k~~~~~aF~i---CGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY 233 (249)
T KOG3545|consen 157 LEVERTWNTTLPKRSAGNAFMI---CGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLY 233 (249)
T ss_pred hheeeeeccccCCCCcCceEEE---eeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceee
Confidence 22221 122221 123444 47889888542 2345 344444 2221111 111222233444455577888
Q ss_pred EEeC
Q psy8875 650 WVDA 653 (734)
Q Consensus 650 w~D~ 653 (734)
.=|-
T Consensus 234 ~wdn 237 (249)
T KOG3545|consen 234 AWDN 237 (249)
T ss_pred EecC
Confidence 7663
No 343
>KOG0283|consensus
Probab=45.92 E-value=5.7e+02 Score=30.20 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=77.0
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVI 629 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv 629 (734)
=|.|.|..+++..+-+...++....+.-....-++ ....-.+.|++.|...+.|++-.=. .-+||.+. ..+|+.
T Consensus 372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~----d~~Vv~ 446 (712)
T KOG0283|consen 372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS----DKKVVD 446 (712)
T ss_pred heecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecC----cCeeEe
Confidence 46777887777777777777777777655443333 2344578999999999988885311 12444432 233333
Q ss_pred EcCC-CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEE----EEcCCCC--CCCCeEEEEE---CCEEEEEeCCCC
Q psy8875 630 VSDI-KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRL----VLYSPQT--LSHPFSISTF---EDWLYWSDWQQK 699 (734)
Q Consensus 630 ~~~l-~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~----i~~~~~~--~~~P~gl~v~---~~~lywtd~~~~ 699 (734)
-.++ ....++++-|. |...++-+.++....++..|-.... -+..... -..-.||.++ .+.|.+|... .
T Consensus 447 W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD-S 524 (712)
T KOG0283|consen 447 WNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND-S 524 (712)
T ss_pred ehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC-C
Confidence 3332 23455665544 3333333344444444433322111 1110000 1124456553 3467887765 3
Q ss_pred ceEEEec
Q psy8875 700 AIYKANK 706 (734)
Q Consensus 700 ~v~~~~~ 706 (734)
+|+.++.
T Consensus 525 rIRI~d~ 531 (712)
T KOG0283|consen 525 RIRIYDG 531 (712)
T ss_pred ceEEEec
Confidence 4555543
No 344
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=45.43 E-value=3.9e+02 Score=28.16 Aligned_cols=199 Identities=9% Similarity=0.010 Sum_probs=89.8
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCC-CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDK-TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~-~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
..+|++. .+..|++- ..+.|++ ..|+|..-+.+ +...+ ..|.+|..- ..+.++.+.. .+.|++..=.|..-+
T Consensus 64 l~~I~f~--~~~g~ivG-~~g~ll~-T~DgG~tW~~v~l~~~lpgs~~~i~~l-~~~~~~l~~~-~G~iy~T~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFD--GNEGWIVG-EPGLLLH-TTDGGKTWERVPLSSKLPGSPFGITAL-GDGSAELAGD-RGAIYRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEEE--TTEEEEEE-ETTEEEE-ESSTTSS-EE----TT-SS-EEEEEEE-ETTEEEEEET-T--EEEESSTTSSEE
T ss_pred EEEEEec--CCceEEEc-CCceEEE-ecCCCCCcEEeecCCCCCCCeeEEEEc-CCCcEEEEcC-CCcEEEeCCCCCCee
Confidence 3456655 45666553 2344444 45655543332 32222 234444332 1234444432 478888877777777
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
.++.......++++..+...+|.++. .+.+++..-.|...-..... ....-..|.++ .++.|+.+. ..+.|...
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~---~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSS---RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEET---TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEEE-TTTEEEEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEEC---cccEEEEecCCCccceEEccCccceehhceec-CCCCEEEEe-CCcEEEEc
Confidence 77766666677777765544444443 35677666666543323322 23445678887 446666665 45667766
Q ss_pred ecCCCceEEEEc--CCC-CCCC-CeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 662 DYNGGNRRLVLY--SPQ-TLSH-PFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 662 ~~dG~~~~~i~~--~~~-~~~~-P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+ ++.+....-. .+. .... -..|++..+.-.|+-.+++.|++- ...|+.-+...
T Consensus 213 ~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S-~DgGktW~~~~ 269 (302)
T PF14870_consen 213 D-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS-TDGGKTWQKDR 269 (302)
T ss_dssp E--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE-SSTTSS-EE-G
T ss_pred c-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe-CCCCccceECc
Confidence 5 2222222211 111 1111 245666555566666666777654 56777666554
No 345
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=45.33 E-value=5.6e+02 Score=29.94 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=97.4
Q ss_pred eEEEeeeccCCeEEEEE-eCCCc---EEEEecCCCCceEEEEeCCCC-CccceeeeccCCcEEEEeCC----CCeEEEEe
Q psy8875 505 ATAIDFVFRTGMIFWSD-ISEKK---IYKAPIDEGSERTVVIEEDKT-IADGLAVDWIYSHIYWTDAH----KNTIELAN 575 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d-~~~~~---I~~~~l~~g~~~~~~~~~~~~-~p~glAvD~~~~~lY~td~~----~~~I~~~~ 575 (734)
.-++++.+..+.|-|+- ..... |...+|..|..... .+. ...+++-...++.||++... ..+|++-.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d----~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD----EITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch----hhcccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 34556666666666653 32222 34444543332211 222 23455555556778888654 24677777
Q ss_pred CCC--CceEEEEcCC-CCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCC--ceEEEEEcCCCCceeEE--EecCCCe
Q psy8875 576 FEG--TMRKVLVRSY-LDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGS--HRNMVIVSDIKWPNGLT--LDLVQRR 647 (734)
Q Consensus 576 ldG--~~~~~l~~~~-l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~--~~~~lv~~~l~~P~gla--vD~~~~~ 647 (734)
+.+ ..-+.|.+.. -..-.++.--....+|++.-.+ ....|+.++++-. ..++++ ..++|+. +|+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~----pr~~g~eY~~eh~~d~ 282 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVL----PRENGVEYSVEHGGDR 282 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEE----EcCCCcEEeeeecCcE
Confidence 766 4444444321 1112233333334566665422 2356666655432 223332 2344554 4444556
Q ss_pred EEEEeC---CCCeEEEEec--CCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC--ceEEEeccCCCceE
Q psy8875 648 LYWVDA---KLNEISSCDY--NGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK--AIYKANKFTGDNLT 713 (734)
Q Consensus 648 LYw~D~---~~~~I~~~~~--dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~--~v~~~~~~~G~~~~ 713 (734)
.|+-.. ++-+|.++.. +-.+-+.++.. .......++.++.++|.|.....+ +|+..+..+|....
T Consensus 283 f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h-~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~ 354 (682)
T COG1770 283 FYILSNADGKNFKLVRAPVSADKSNWRELIPH-REDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG 354 (682)
T ss_pred EEEEecCCCcceEEEEccCCCChhcCeeeecc-CCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee
Confidence 555532 2225665555 11222233321 122234567779999999876543 45555555666555
No 346
>KOG1272|consensus
Probab=45.29 E-value=63 Score=35.43 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=46.7
Q ss_pred cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCc
Q psy8875 513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEP 592 (734)
Q Consensus 513 ~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P 592 (734)
..+.|-|.|++.+.|+.. +..+..+. ..|..+|.+.-|- +-..++.|...+......-+-+.......
T Consensus 229 ~~G~L~Y~DVS~GklVa~-~~t~~G~~----------~vm~qNP~NaVih-~GhsnGtVSlWSP~skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 229 EAGFLKYQDVSTGKLVAS-IRTGAGRT----------DVMKQNPYNAVIH-LGHSNGTVSLWSPNSKEPLVKILCHRGPV 296 (545)
T ss_pred cCCceEEEeechhhhhHH-HHccCCcc----------chhhcCCccceEE-EcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence 466777777766655432 22222222 2233333322222 22335666665555443322122334567
Q ss_pred eeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 593 RSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 593 ~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
++||||+...+|--| |...+|...++-.
T Consensus 297 ~siAv~~~G~YMaTt--G~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATT--GLDRKVKIWDLRN 324 (545)
T ss_pred ceEEECCCCcEEeec--ccccceeEeeecc
Confidence 899999865555444 4445555545444
No 347
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=44.08 E-value=71 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=22.1
Q ss_pred CEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875 689 DWLYWSDWQQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 689 ~~lywtd~~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
|.||+. ...+.|+.+|..+|+.+-.....
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEeeeCC
Confidence 467887 56688899999999887776543
No 348
>PHA02790 Kelch-like protein; Provisional
Probab=43.45 E-value=5.3e+02 Score=29.11 Aligned_cols=132 Identities=13% Similarity=0.075 Sum_probs=67.3
Q ss_pred cCCcEEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCce-eEEEeCCCCeEEEEecC--CCceEEEeccCCCceEEEEEc
Q psy8875 557 IYSHIYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPR-SLALNPIDGWMYWSDWG--QNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 557 ~~~~lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~-~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~~~~lv~~ 631 (734)
.+++||+.-.. ...+++.+.....-..+ ..+..|+ +.++-..+|+||+.--. ....+++.+.... +-..+ .
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~--~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~-~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNM--PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFG-P 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEEC--CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeC-C
Confidence 56899998543 24577776543322222 3444444 22222357999998521 1134566555432 22222 2
Q ss_pred CCCCce-eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875 632 DIKWPN-GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 632 ~l~~P~-glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~ 696 (734)
.+..|. +.++-..+++||+.- +.++++++....=+.+ ........-.++++.+++||+.-.
T Consensus 393 ~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~-~~m~~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 393 STYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLI-DDPIYPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEc-CCCCCCccccEEEEECCEEEEECC
Confidence 233332 111113589999985 3466777653322222 211111223478889999999754
No 349
>KOG1226|consensus
Probab=42.66 E-value=80 Score=36.96 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=10.0
Q ss_pred cccCCCCCccCCCc
Q psy8875 202 SCACPEGLKLLPDL 215 (734)
Q Consensus 202 ~C~C~~G~~~~~~~ 215 (734)
.|.|.+||.|..|+
T Consensus 479 ~C~C~~G~~G~~CE 492 (783)
T KOG1226|consen 479 QCRCDEGWLGKKCE 492 (783)
T ss_pred ceecCCCCCCCccc
Confidence 46778887777665
No 350
>KOG2280|consensus
Probab=42.47 E-value=4.1e+02 Score=31.36 Aligned_cols=104 Identities=8% Similarity=-0.009 Sum_probs=51.9
Q ss_pred ecCCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 499 VNSTKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 499 ~~~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
+.....|+||..++. -..+| .....|..+++.|.-..+++.. ++.=|.+-|....=...-...+++.+.++-
T Consensus 40 ~Ap~gGpIAV~r~p~~~~~~~---~a~~~I~If~~sG~lL~~~~w~----~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 40 CAPFGGPIAVTRSPSKLVPLY---SARPYIRIFNISGQLLGRILWK----HGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred ecccCCceEEEeccccccccc---ccceeEEEEeccccchHHHHhc----CCCeeeecccCCceEEEEeccceEEEeecc
Confidence 345678889988862 12333 2233455555542111222221 223344444443322222235788888887
Q ss_pred CCceEE--EEcCC--------CCCceeEEEeCCCCeEEEEec
Q psy8875 578 GTMRKV--LVRSY--------LDEPRSLALNPIDGWMYWSDW 609 (734)
Q Consensus 578 G~~~~~--l~~~~--------l~~P~~iavD~~~g~LYwtd~ 609 (734)
|..++. +.... ...-.||++-...|.+|....
T Consensus 113 ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 113 GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred hhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 766544 21100 011268888777888887763
No 351
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.50 E-value=4.7e+02 Score=28.64 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=39.3
Q ss_pred CCceeEEEeCCCCeEEEEec-----CCCceEEEeccCCCceEEEEEcC----------C---CCceeEEEecCCCeEEEE
Q psy8875 590 DEPRSLALNPIDGWMYWSDW-----GQNAKIERAGMDGSHRNMVIVSD----------I---KWPNGLTLDLVQRRLYWV 651 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~-----~~~~~I~~~~ldG~~~~~lv~~~----------l---~~P~glavD~~~~~LYw~ 651 (734)
..|.++++.+....++|+.. .-.+-|.+.+++|+..+++.... + ..-.|||+.+...+||-+
T Consensus 138 ~~~~~ralt~~d~~~~s~~~~~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~L~~~ 217 (391)
T COG4222 138 EDPEGRALTPADFDVESSQGAWIGDEFGPYLLEFDANGKLVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKKLYAL 217 (391)
T ss_pred cCchhhcccCCCcceeeccccccccccCcceEEECCCCccccccccccccCcCCCccccccccceeeEEecCCCceEEEE
Confidence 34556666655545554442 23478999999988766553210 1 123588999888899966
Q ss_pred e
Q psy8875 652 D 652 (734)
Q Consensus 652 D 652 (734)
-
T Consensus 218 l 218 (391)
T COG4222 218 L 218 (391)
T ss_pred E
Confidence 3
No 352
>KOG0641|consensus
Probab=41.41 E-value=3.7e+02 Score=26.71 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-------CCccceeeeccCCcEEE
Q psy8875 491 DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-------TIADGLAVDWIYSHIYW 563 (734)
Q Consensus 491 ~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-------~~p~glAvD~~~~~lY~ 563 (734)
.|..+..+......+.++ |.| ++.+|.+....+.|.-.+|. -..-.-++...+ ..+.++||| .+++|..
T Consensus 172 ~g~~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~glessavaav~vd-psgrll~ 247 (350)
T KOG0641|consen 172 RGQGFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGLESSAVAAVAVD-PSGRLLA 247 (350)
T ss_pred CCCcceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCcccceeEEEEEC-CCcceee
Q ss_pred EeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc----eEEEEEcCCCCceeE
Q psy8875 564 TDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH----RNMVIVSDIKWPNGL 639 (734)
Q Consensus 564 td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~----~~~lv~~~l~~P~gl 639 (734)
+-.....-...++.|.....-+.......+.+-+.|-.-+|.-... ..+|...++.|.. ..+++.+.-...--+
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy--d~~ikltdlqgdla~el~~~vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY--DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQC 325 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc--cceEEEeecccchhhcCceEEEEeccCceEEE
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 640 TLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 640 avD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
.+. ..+.-|.+.+....+....++|
T Consensus 326 rwh-~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 326 RWH-PQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred Eec-CccceeeeccCcceEEEeccCC
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=41.08 E-value=7.3e+02 Score=30.02 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=35.3
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE--ECCEEEEEeC
Q psy8875 637 NGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST--FEDWLYWSDW 696 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v--~~~~lywtd~ 696 (734)
..+|.+ ..|+|-++. ..+.|..++-.|.+.++.+. .++.| .+|.+ ++.+|..|--
T Consensus 581 s~~aTt-~~G~iavgs-~~G~IRLyd~~g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 581 SCFATT-EDGYIAVGS-NKGDIRLYDRLGKRAKTALP---GLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred eEEEec-CCceEEEEe-CCCcEEeecccchhhhhcCC---CCCCCeeEEEecCCCcEEEEeec
Confidence 355554 566776665 45788888877877776663 46677 47777 4556666543
No 354
>KOG1836|consensus
Probab=40.62 E-value=31 Score=44.73 Aligned_cols=67 Identities=27% Similarity=0.577 Sum_probs=38.1
Q ss_pred cccccCCCCCcCccccCCCccee-ecCCCcEecCCCCccccccCc--CCCCCcccceeccCCceEEe-cCCCeee
Q psy8875 390 DECAKDNGGCLHKCVDLPVGYMC-ECNEGYKLSSNRHTCIDIDEC--ETPGSCSQICLNEKGGFKCE-CVAGYIK 460 (734)
Q Consensus 390 ~eC~~~~~~C~~~C~~~~~~~~C-~C~~G~~l~~~~~~C~~~~eC--~~~~~C~~~C~n~~g~~~C~-C~~gy~~ 460 (734)
+.|....+.|. |.....+-+| .|..||...++..+=.|-..| -..+.|.+++. .....|. |++||++
T Consensus 738 ~~Cd~~tG~C~--C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~--~~~~iCk~Cp~gytG 808 (1705)
T KOG1836|consen 738 NICDPRTGQCK--CKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPE--ILEVVCKNCPPGYTG 808 (1705)
T ss_pred ccccCCCCcee--cccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCc--ccceecCCCCCCCcc
Confidence 56666666666 8887778888 699998766544332211122 12234444332 3345565 6666665
No 355
>KOG0277|consensus
Probab=40.01 E-value=4.3e+02 Score=27.03 Aligned_cols=32 Identities=6% Similarity=-0.075 Sum_probs=15.7
Q ss_pred eEEEecCCCeEEEEeCCCC--eEEEEecCCCceE
Q psy8875 638 GLTLDLVQRRLYWVDAKLN--EISSCDYNGGNRR 669 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~--~I~~~~~dG~~~~ 669 (734)
+.++.|....|+-+-++.+ +|+-++..|+...
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 3444555555655555544 3444444444443
No 356
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=39.63 E-value=4.1e+02 Score=26.73 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=73.2
Q ss_pred EEeeeccCCeEEEEEeCCCcEEEEec--CCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC-
Q psy8875 507 AIDFVFRTGMIFWSDISEKKIYKAPI--DEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT- 579 (734)
Q Consensus 507 ~i~~d~~~~~lyw~d~~~~~I~~~~l--~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~- 579 (734)
-|++.+ +++||.+. ...+++... ..++. .+.|-..+-..-..|++| .++.||-... .++|++......
T Consensus 38 ~i~~~P-~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d-~~G~LYaV~~-~G~lyR~~~~~~~ 112 (229)
T PF14517_consen 38 DIAAGP-NGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFD-PTGVLYAVTP-DGKLYRHPRPTNG 112 (229)
T ss_dssp EEEE-T-TS-EEEEE--TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE--TTS-EEEEET-T-EEEEES---ST
T ss_pred eEEEcC-CceEEEEE--CCceEEecCCccCcccccccCcccccCcccceeEEEec-CCccEEEecc-ccceeeccCCCcc
Confidence 345555 77888876 336776621 21211 233333224445589999 5789997776 577877654221
Q ss_pred -------ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe-ccCCCc-----eEEEEE-cCCCCceeEEEecCC
Q psy8875 580 -------MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA-GMDGSH-----RNMVIV-SDIKWPNGLTLDLVQ 645 (734)
Q Consensus 580 -------~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~-~ldG~~-----~~~lv~-~~l~~P~glavD~~~ 645 (734)
.-+.|..........|-.++ +|.||..+. ..++++. ..++.. ...++. .....+.-|..- .+
T Consensus 113 ~~~W~~~~~~~iG~~GW~~f~~vfa~~-~GvLY~i~~--dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~-~~ 188 (229)
T PF14517_consen 113 SDNWIGGSGKKIGGTGWNDFDAVFAGP-NGVLYAITP--DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFS-PD 188 (229)
T ss_dssp T--HHH-HSEEEE-SSGGGEEEEEE-T-TS-EEEEET--TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE--TT
T ss_pred CcchhhccceecccCCCccceEEEeCC-CccEEEEcC--CCceEEeCCCCCCCCccccccceeccCCcccceEEeeC-CC
Confidence 12334356666778888886 689999983 3466665 333322 223333 344445666663 67
Q ss_pred CeEEEEeCCCCeEEEEe
Q psy8875 646 RRLYWVDAKLNEISSCD 662 (734)
Q Consensus 646 ~~LYw~D~~~~~I~~~~ 662 (734)
+.||+++ ..+.|++..
T Consensus 189 g~L~~V~-~~G~lyr~~ 204 (229)
T PF14517_consen 189 GNLWAVK-SNGKLYRGR 204 (229)
T ss_dssp S-EEEE--ETTEEEEES
T ss_pred CcEEEEe-cCCEEeccC
Confidence 7899884 457787654
No 357
>KOG0321|consensus
Probab=39.57 E-value=6.6e+02 Score=29.09 Aligned_cols=74 Identities=7% Similarity=-0.033 Sum_probs=49.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l 576 (734)
...+..|.|.+ .+.++++-.+..+|.-.++.++..... +.-+--.....+++-+.+..+|.|-...+.|.+.++
T Consensus 100 ~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 100 KNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 34556666766 666777777778888777764332211 111233456778888888999999888888777665
No 358
>KOG2321|consensus
Probab=38.99 E-value=6.4e+02 Score=28.82 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=54.7
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeE
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~L 648 (734)
..|..-..-|.+.++-+. ..-+.|+++..+--||....+ ..|+|.+|+-..-..-+.....-.+.+.|.+.++.|
T Consensus 116 R~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg--~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 116 RTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSG--SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLL 190 (703)
T ss_pred ceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecC--cceEEEEccccccccccccccccceeeeecCccceE
Confidence 566666666666554432 123688898888889998754 689999997443222222333445666666555443
Q ss_pred EEEeCCCCeEEEEecCCC
Q psy8875 649 YWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 649 Yw~D~~~~~I~~~~~dG~ 666 (734)
.+-...+.|+..++.-.
T Consensus 191 -a~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 191 -ACGTEDGVVEFWDPRDK 207 (703)
T ss_pred -EecccCceEEEecchhh
Confidence 33344566666665433
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=37.12 E-value=3.9e+02 Score=28.14 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=44.2
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCCCc-eEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC-ceEEEeccCCCceEEEe
Q psy8875 639 LTLDLVQRRLYWVDAKLNEISSCDYNGGN-RRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK-AIYKANKFTGDNLTAIT 716 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~-~v~~~~~~~G~~~~~l~ 716 (734)
.+|...+++|..+-. ++|...+++... ....... ........|.+.+++|++.|...+ .+++++. .+..+..++
T Consensus 92 ~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~-~~~~l~~va 167 (321)
T PF03178_consen 92 TAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFKNYILVGDAMKSVSLLRYDE-ENNKLILVA 167 (321)
T ss_dssp EEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEEEET-TTE-EEEEE
T ss_pred eEhhhhCCEEEEeec--CEEEEEEccCcccchhhhee-cceEEEEEEeccccEEEEEEcccCEEEEEEEc-cCCEEEEEE
Confidence 344456888777764 577777777766 4433322 122366788889999999998644 2334443 344344444
No 360
>KOG0973|consensus
Probab=37.03 E-value=8.7e+02 Score=29.76 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=72.2
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEE
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNM 627 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~ 627 (734)
...++-++ .+.+.++-+..++|.+.+...-.+..++.+....+.|+++||...+| -+.... .-+||+..--| ...
T Consensus 132 V~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwrt~dw~--i~k 207 (942)
T KOG0973|consen 132 VLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWRTSDWG--IEK 207 (942)
T ss_pred cceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCee-eeecCCceEEEEEcccce--eeE
Confidence 34444443 45666666667888888876555555666777889999999976433 333221 22455532212 122
Q ss_pred EEEcCCC------CceeEEEecCCCeEEEEeCCCC---eEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC
Q psy8875 628 VIVSDIK------WPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697 (734)
Q Consensus 628 lv~~~l~------~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~ 697 (734)
.+.+.+. +-.-|.+.|.+..|-.+.+-++ .|..++-++-....-+-+ -..|.-++.|+-+||=-..+
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG---H~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG---HSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec---CCCceEEEEeChHHhccccc
Confidence 2222211 1123455555555555543322 343333333221221111 12366666677777765554
No 361
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.70 E-value=87 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=20.2
Q ss_pred EECCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 686 TFEDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 686 v~~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
+.++.||++... +.|+.++..+|+.+..
T Consensus 4 ~~~~~v~~~~~~-g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGSTD-GTLYALDAKTGEILWT 31 (33)
T ss_pred EECCEEEEEcCC-CEEEEEEcccCcEEEE
Confidence 356678888764 7888888888876543
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=36.49 E-value=4.7e+02 Score=26.53 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=64.7
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-----------CCCceeE-EEecCCCeEEEEeCCCCe
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-----------IKWPNGL-TLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-----------l~~P~gl-avD~~~~~LYw~D~~~~~ 657 (734)
..|..|++- .+.|.+.- .......+++....+.+.... ...|.++ .++ .+..| .+- .+.
T Consensus 139 ~~~~~i~~~--~~~i~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~L-l~~--~~~ 209 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFL-LCY--DNI 209 (275)
T ss_pred CCcEEEEEe--CCEEEEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEE-EEe--cce
Confidence 567787774 67777775 244566667633333333211 1123333 332 23333 332 234
Q ss_pred EEEEecCCCceE-EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 658 ISSCDYNGGNRR-LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 658 I~~~~~dG~~~~-~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
-..++..|...+ ..+. -...|.++++...+|+....+ .|...+..+|+.++++..
T Consensus 210 g~fv~~~G~~~r~~~i~---W~~~p~~~~~~~pyli~~~~~--~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 210 GVFVNKNGEPSRKSTIQ---WSSAPQSVAYSSPYLIAFSSN--SIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEEcCCCCcCcccEEE---cCCchhEEEEECCEEEEECCC--EEEEEECcCCcEEEEEEC
Confidence 555677786433 2221 124688999999988886654 466667788988888764
No 363
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=36.44 E-value=89 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.707 Sum_probs=18.2
Q ss_pred CCcCCCC--CCCcccccCcCCCCceEeCc
Q psy8875 125 SDEKSCK--NRTCQASEFRCGNNRCIPNH 151 (734)
Q Consensus 125 ~de~~C~--~~~C~~~~f~C~~g~Ci~~~ 151 (734)
+|..+|. ...|+..+ .|-+|+|++..
T Consensus 82 ~d~~nCG~Cg~~C~~g~-~cC~G~Cvd~~ 109 (136)
T PF04885_consen 82 SDRNNCGACGNKCPYGQ-TCCGGQCVDLN 109 (136)
T ss_pred CCccccHhhcCCCCCCc-eecCCEeECCC
Confidence 5777774 35787766 56689998865
No 364
>KOG0973|consensus
Probab=36.34 E-value=8.9e+02 Score=29.67 Aligned_cols=77 Identities=9% Similarity=0.079 Sum_probs=49.8
Q ss_pred ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 499 VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 499 ~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
......+..|.|+| .+.+..+-...++|...+.... ....++..-...+.|+++||.++ -+-+.+..+.|.+.....
T Consensus 126 ~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 126 RGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD 202 (942)
T ss_pred ecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEccc
Confidence 33445667788887 5666666666777777766533 34444444566789999998754 445556667777766443
No 365
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=36.22 E-value=5.5e+02 Score=27.24 Aligned_cols=38 Identities=5% Similarity=-0.145 Sum_probs=18.4
Q ss_pred CeEEEEeCCCCceEEEEcCCCCC-ce-eEEEeCCCCeEEEEe
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDE-PR-SLALNPIDGWMYWSD 608 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~-P~-~iavD~~~g~LYwtd 608 (734)
..+++.++....-+.+ ..+.. |+ +.++-...++||+.-
T Consensus 168 ~~v~~YDp~t~~W~~~--~~~p~~~r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNL--GENPFLGTAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ceEEEEECCCCceeEC--ccCCCCcCCCceEEEECCEEEEEe
Confidence 4567777654433332 22221 22 222222468899875
No 366
>COG3361 Uncharacterized conserved protein [Function unknown]
Probab=35.73 E-value=90 Score=29.96 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 669 (734)
..|.|+-+|-.+|.-|++-. + ++ |.... ....+..|.+-++-..+=|.|++..+...|+-.++|...+.
T Consensus 41 ~~P~g~~~Dt~dG~ayvs~v---P--F~--m~n~r----~~~~lpip~~rtFpElNlRtYVt~~GrpGIyFfsLda~~~l 109 (240)
T COG3361 41 SYPPGTRPDTADGMAYVSLV---P--FR--MSNTR----LGTALPIPYVRTFPELNLRTYVTNAGRPGIYFFSLDAARLL 109 (240)
T ss_pred cCCCCCCccccCCeeEEEEe---e--ee--eeccc----ccccCCCcccccccccceEEEEeeCCCceeEEEeccchhhh
Confidence 35788888888888888752 1 11 11111 11234556666776667799999999999999999988776
Q ss_pred EEE
Q psy8875 670 LVL 672 (734)
Q Consensus 670 ~i~ 672 (734)
.+.
T Consensus 110 ~V~ 112 (240)
T COG3361 110 VVP 112 (240)
T ss_pred eee
Confidence 654
No 367
>KOG1517|consensus
Probab=35.32 E-value=7.1e+02 Score=30.84 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=65.5
Q ss_pred cceeeecc--CCcEEEEeCCCCeEEEEeCCCCceEE-EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-
Q psy8875 550 DGLAVDWI--YSHIYWTDAHKNTIELANFEGTMRKV-LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR- 625 (734)
Q Consensus 550 ~glAvD~~--~~~lY~td~~~~~I~~~~ldG~~~~~-l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~- 625 (734)
.|+-+||. +|+||.+-. ...|++.+.+-..... +..+...-+++|.-|..+|.|+.+..+. ++|...++--..+
T Consensus 1167 ~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD-GsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD-GSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecC-CceEEeecccCCcc
Confidence 46889996 577887653 4566677766443322 2224455688888888888888887653 5555554432222
Q ss_pred -EEEEEcC-CCC--ceeEEEecCCCeEEEEeCCCCeEEEEecCCCce
Q psy8875 626 -NMVIVSD-IKW--PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR 668 (734)
Q Consensus 626 -~~lv~~~-l~~--P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~ 668 (734)
.+-+... -.+ ..++.+-..+-.=.++-+..+.|+..++.+...
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 2222111 111 345555422222245556677788877776433
No 368
>KOG0275|consensus
Probab=34.96 E-value=5.6e+02 Score=26.92 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCCCeEEEEeCCCCceEEEEcCC--CCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcCCCCceeEEEe
Q psy8875 566 AHKNTIELANFEGTMRKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSDIKWPNGLTLD 642 (734)
Q Consensus 566 ~~~~~I~~~~ldG~~~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~l~~P~glavD 642 (734)
...++|+++++.|...+.+..+. ...-..-++.|...++|-.. +...++.... .|+..+++. -.-..|-||+-.
T Consensus 412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HH 488 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHH 488 (508)
T ss_pred cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCcEEEEEEeecCceeeeee-cccccccccccC
Confidence 34567777777777766665432 22334556778778888775 3466666554 344333221 122335566654
Q ss_pred cC
Q psy8875 643 LV 644 (734)
Q Consensus 643 ~~ 644 (734)
+.
T Consensus 489 PH 490 (508)
T KOG0275|consen 489 PH 490 (508)
T ss_pred cc
Confidence 33
No 369
>KOG0274|consensus
Probab=34.52 E-value=7.7e+02 Score=28.38 Aligned_cols=179 Identities=7% Similarity=-0.002 Sum_probs=88.5
Q ss_pred CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC
Q psy8875 523 SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG 602 (734)
Q Consensus 523 ~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g 602 (734)
....|+..++..+....++.. -...+..|.++ +.+.++-...+.|.+.+.........+.+......+|+++.. .
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~ 383 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N 383 (537)
T ss_pred CCceEEEEeccCcceEEEecc-ccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c
Confidence 445566666654443333321 23345556665 555556555667887776633333333455667788888765 3
Q ss_pred eEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC
Q psy8875 603 WMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP 681 (734)
Q Consensus 603 ~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P 681 (734)
++|=.. ....|..-++.+. .....+........+|.+ .+.++.+....+.|..-+.........+... ....-
T Consensus 384 ~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v 457 (537)
T KOG0274|consen 384 RLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGV 457 (537)
T ss_pred eEEeee--eccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccC-CcccE
Confidence 444333 2356777777765 222222222222344544 3455556555667777665544433333321 11111
Q ss_pred eEEEEECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 682 FSISTFEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 682 ~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
..+++. ....++-...+.|...+..+|+.+.
T Consensus 458 ~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 458 SALALG-KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence 122222 2344444444555555555555444
No 370
>KOG0649|consensus
Probab=33.24 E-value=5.3e+02 Score=26.17 Aligned_cols=111 Identities=11% Similarity=0.179 Sum_probs=60.6
Q ss_pred CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC-Cc
Q psy8875 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG-GN 667 (734)
Q Consensus 589 l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG-~~ 667 (734)
....+++-+||..+.|+++. | ...|+..++.....+..+.....+.+.++.-..++.|+ +-+..+.+..-+... +.
T Consensus 114 vPeINam~ldP~enSi~~Ag-G-D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAG-G-DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCccceeEeccCCCcEEEec-C-CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccce
Confidence 45668999999999999997 4 47899988854433334444444455555533344443 333344444444333 33
Q ss_pred eEEEEc-CCCCC------CCCeEEEEECCEEEEEeCCCCceE
Q psy8875 668 RRLVLY-SPQTL------SHPFSISTFEDWLYWSDWQQKAIY 702 (734)
Q Consensus 668 ~~~i~~-~~~~~------~~P~gl~v~~~~lywtd~~~~~v~ 702 (734)
.++|-. ....+ .+-.+|++.+++|.---..+-+|+
T Consensus 191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred eEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 333321 11111 223567788888776444434444
No 371
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=32.70 E-value=6.7e+02 Score=27.13 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred EEeeeccCCeEEE-EEeCCCcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCCCC-----------eEEE
Q psy8875 507 AIDFVFRTGMIFW-SDISEKKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAHKN-----------TIEL 573 (734)
Q Consensus 507 ~i~~d~~~~~lyw-~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~~~-----------~I~~ 573 (734)
+.++- .+.||+ .......+++++++.....-..+......|+ +.++-..++.||+.-.... .+++
T Consensus 33 ~~~~~--~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~ 110 (376)
T PRK14131 33 TGAID--NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYK 110 (376)
T ss_pred eEEEE--CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEE
Q ss_pred EeCCCCceEEEEcCCCCCceeEEEeC-CCCeEEEEecCCC---------------------------------------c
Q psy8875 574 ANFEGTMRKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQN---------------------------------------A 613 (734)
Q Consensus 574 ~~ldG~~~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~~---------------------------------------~ 613 (734)
.++....-+.+.........+.+.-. .+++||+.- |.. .
T Consensus 111 YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~G-G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (376)
T PRK14131 111 YDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITG-GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNK 189 (376)
T ss_pred EeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEEC-CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCc
Q ss_pred eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC------CCCeEEEEecCCCceEEEEcCCCCCCCCeE----
Q psy8875 614 KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA------KLNEISSCDYNGGNRRLVLYSPQTLSHPFS---- 683 (734)
Q Consensus 614 ~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~g---- 683 (734)
.+++.+..-..-..+-.-......+.++-..+++||+.-. .+..++...++-...+-... ..+..|.+
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~p~~~~~~~~ 267 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL--PDLPPAPGGSSQ 267 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec--CCCCCCCcCCcC
Q ss_pred -------EEEECCEEEEE
Q psy8875 684 -------ISTFEDWLYWS 694 (734)
Q Consensus 684 -------l~v~~~~lywt 694 (734)
.++.++.||+.
T Consensus 268 ~~~~~~~a~~~~~~iyv~ 285 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVA 285 (376)
T ss_pred CccceEeceeECCEEEEe
No 372
>KOG0319|consensus
Probab=32.66 E-value=8.9e+02 Score=28.56 Aligned_cols=218 Identities=14% Similarity=0.118 Sum_probs=110.8
Q ss_pred cceeeeeeccceEEeecCCCceE-EEecCCcceEEEeee-ccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 474 HASLLFARKHDIRKISLDHHEMT-AIVNSTKSATAIDFV-FRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 474 ~~~l~~~~~~~I~~i~l~~~~~~-~l~~~~~~~~~i~~d-~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
..+++++..+.|..++.+...+. .++..-..+..+-|- +..++|.++. +.+.+..+++. +..-.+ +.+--. .-
T Consensus 294 ~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT-Ns~~lr~y~~~-~~~c~i-i~GH~e--~v 368 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT-NSPELRLYTLP-TSYCQI-IPGHTE--AV 368 (775)
T ss_pred CceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe-CCCceEEEecC-CCceEE-EeCchh--he
Confidence 34666677777777655443322 223333334444432 2345566553 45556665665 333333 332222 23
Q ss_pred eeee-ccCCcEEEEeCCCCeEEEEeCCCCceE-EEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--
Q psy8875 552 LAVD-WIYSHIYWTDAHKNTIELANFEGTMRK-VLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-- 624 (734)
Q Consensus 552 lAvD-~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-- 624 (734)
+++| |..+.|+.|-+...++....++....+ ..+ .+......++++....-.+|.+- +....|..-.+.++.
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv-S~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV-SQDCTLKLWDLPKSKET 447 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe-cCCceEEEecCCCcccc
Confidence 5555 677878888887777766666332222 222 23345566788843333344444 444555555555521
Q ss_pred eE-EEEE------cCCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEE
Q psy8875 625 RN-MVIV------SDIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWS 694 (734)
Q Consensus 625 ~~-~lv~------~~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywt 694 (734)
+. .++. ..-...|+++|. .++.|+-+-+ ++.+|+.+. ++. ...++++ .-..-..+.+ -.+.+..|
T Consensus 448 ~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le-~~~-l~~vLsG--H~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 448 AFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE-QLR-LLGVLSG--HTRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred cccceehhhHHHHhhcccccceEec-CCCceEEecccccceeeeccc-Cce-EEEEeeC--CccceEEEEeccccceeEe
Confidence 11 1111 012346899996 6777777754 455777765 222 2222322 2223344555 34668888
Q ss_pred eCCCCceE
Q psy8875 695 DWQQKAIY 702 (734)
Q Consensus 695 d~~~~~v~ 702 (734)
-++...|.
T Consensus 523 ~SgD~TvK 530 (775)
T KOG0319|consen 523 CSGDKTVK 530 (775)
T ss_pred ccCCceEE
Confidence 77655443
No 373
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=32.53 E-value=7.3e+02 Score=27.51 Aligned_cols=191 Identities=12% Similarity=0.168 Sum_probs=97.1
Q ss_pred EeeeccCCeEEEEEeCCCcEEEEecCCCCceE-E-EEeCCCCCccce-eeeccCCcEEEEeCCCCeEEEEeCCCCceEE-
Q psy8875 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERT-V-VIEEDKTIADGL-AVDWIYSHIYWTDAHKNTIELANFEGTMRKV- 583 (734)
Q Consensus 508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~-~-~~~~~~~~p~gl-AvD~~~~~lY~td~~~~~I~~~~ldG~~~~~- 583 (734)
+++.+..++..|.....+.++..+|..-+..- . .....-..|.+| .|...++.||.-- ..+|++..+.|..--.
T Consensus 139 ~Dv~~~dGryVw~~pgt~~f~vSdL~D~T~~d~~~~~ytAEsqPD~Ivgl~~~r~~I~~fG--~~TiEvf~nTGasd~~~ 216 (469)
T PF11134_consen 139 VDVTRLDGRYVWVKPGTGYFFVSDLEDETKPDRYLDFYTAESQPDNIVGLAVWRREIWCFG--ASTIEVFYNTGASDFTQ 216 (469)
T ss_pred eEEEeccceEEEEeCCCceEEEeecccccCcchhhhhhhhccCCCceEEEEEeeeeEEEEe--cccEEEEEccCCccccc
Confidence 45555577777876677778877776433311 1 111122344432 2332345555433 4678888877654321
Q ss_pred ---------EEcCCCCCceeEEEeCCCCeEEEEecCC--CceEEEeccCCCceEEEEEcCC-------CCc---eeE--E
Q psy8875 584 ---------LVRSYLDEPRSLALNPIDGWMYWSDWGQ--NAKIERAGMDGSHRNMVIVSDI-------KWP---NGL--T 640 (734)
Q Consensus 584 ---------l~~~~l~~P~~iavD~~~g~LYwtd~~~--~~~I~~~~ldG~~~~~lv~~~l-------~~P---~gl--a 640 (734)
.+..+...+..++ ...+.++|..... .+.|++.+ |-....|-...+ ..+ .++ +
T Consensus 217 ~~y~r~pg~~Iq~GcAa~~s~~--~~~~t~~wlg~~~~G~~sVy~~~--gyq~~RIST~~IE~~l~~ya~~ela~af~et 292 (469)
T PF11134_consen 217 PPYQRQPGAMIQKGCAAKHSKT--KFGNTVAWLGHDATGAPSVYRIN--GYQASRISTHAIEKALRSYAHDELAIAFMET 292 (469)
T ss_pred chhhhCCcceeeccccccceee--ecCCEEEEeccCCCCCceEEEec--CCceeeeccHHHHHHHHhhccHHHHHHHHHH
Confidence 1222233333333 3567889986432 35666654 433333322111 111 111 1
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCC---ceEEEEcCCCCCCCCe-EE--EEECCEEEEEeCCCCceEEEec
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGG---NRRLVLYSPQTLSHPF-SI--STFEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~---~~~~i~~~~~~~~~P~-gl--~v~~~~lywtd~~~~~v~~~~~ 706 (734)
+-..+..+|+.-.. ++.+.++...+ .+.-++... ....|. ++ .++++++.+-|+.++.|.++..
T Consensus 293 ~~f~~h~~l~ihlp-~~tlcyD~at~~~~~qw~~l~tg-~~~~~~R~~~~~f~~~q~~VGD~~~g~lg~L~~ 362 (469)
T PF11134_consen 293 YQFDGHEFLLIHLP-RKTLCYDAATSQWGEQWFILKTG-FYDEPYRAIDFMFFDNQITVGDKQNGLLGALDF 362 (469)
T ss_pred hhcCceEEEEEEcC-CceEEEEcccCCcccceEEEecc-ccCCcceeeeeEEeCCeeEecccccceeEEecc
Confidence 22335567766654 35566665543 233333322 223343 23 3378899999999998888764
No 374
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=32.49 E-value=8.2e+02 Score=28.12 Aligned_cols=202 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
....++.+| ...-||+-...+ +++++...+..........-.....|+.| ..+.|++... .-|++....|-...
T Consensus 165 ~~V~aLv~D--~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d-~qg~LWVGTd--qGv~~~e~~G~~~s 238 (671)
T COG3292 165 TPVVALVFD--ANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIAD-VQGRLWVGTD--QGVYLQEAEGWRAS 238 (671)
T ss_pred ccceeeeee--ccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHH-hcCcEEEEec--cceEEEchhhcccc
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---CCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---DIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
.....--..-..+.+--..|.|++.. ...++|+.+.-........+ .....++|..|..++. |+-...+.+.
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lWiGT---enGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsL--Wv~t~~giv~ 313 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELWIGT---ENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSL--WVGTYGGIVR 313 (671)
T ss_pred ccCCCCcchheeeeecccCCCEEEee---cccceeEecCCCCccccccccCCccccccceeeccCCCE--eeeccCceEE
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
.-.-+=....++...+.....-..++. .-++..|-+...+.+..++..+|..+..+
T Consensus 314 ~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv 370 (671)
T COG3292 314 YLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSV 370 (671)
T ss_pred EecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEe
No 375
>KOG1539|consensus
Probab=32.49 E-value=9.5e+02 Score=28.83 Aligned_cols=191 Identities=10% Similarity=0.038 Sum_probs=82.3
Q ss_pred EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcEEEEeCC------CCeEEEEeCCCCc
Q psy8875 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAH------KNTIELANFEGTM 580 (734)
Q Consensus 508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~ 580 (734)
+.+-.....+|++-...+.+..++.. ....+.+. .-...+..||-+ ...+|.+-.. .+++.+....+..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~--kl~ll~vs~~lp~~I~alas~--~~~vy~A~g~~i~~~~rgk~i~~~~~~~~ 114 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVN--KLNLLFVSKPLPDKITALASD--KDYVYVASGNKIYAYARGKHIRHTTLLHG 114 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEecc--ceEEEEecCCCCCceEEEEec--CceEEEecCcEEEEEEccceEEEEecccc
Confidence 45555577788877666666665543 22333333 222334455544 4455655432 2323333222222
Q ss_pred --eEEEEcCCCCCceeEEEeCCCCeEEEEecCC-Cc-eE--EEeccCCCceEEEEEcCCCCceeEEEecCCCeE-EEEeC
Q psy8875 581 --RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NA-KI--ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL-YWVDA 653 (734)
Q Consensus 581 --~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~-~I--~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~L-Yw~D~ 653 (734)
...+. ...-.=||+|-.+....|--... .. .+ ......+...+.+++. -.+-|-|.+-..+|+| .|--.
T Consensus 115 a~v~~l~---~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP-~TYLNKIvvGs~~G~lql~Nvr 190 (910)
T KOG1539|consen 115 AKVHLLL---PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHP-STYLNKIVVGSSQGRLQLWNVR 190 (910)
T ss_pred ceEEEEe---eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecc-hhheeeEEEeecCCcEEEEEec
Confidence 11111 11123477776555555544321 11 11 1111112211222211 1223556664444443 44444
Q ss_pred CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccC
Q psy8875 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~ 708 (734)
....|+.+.--....+.+.+++ .-.-.+|-..+|.|.+-+.+.++|+.--+..
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsP--aLDVVaiG~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSP--ALDVVAIGLENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred cCcEEEEecccccceeEeccCC--cceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence 4455665554443333333221 1112233335677777777666665554554
No 376
>KOG0303|consensus
Probab=32.28 E-value=6.9e+02 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=20.4
Q ss_pred CCCCCCCeEEEE---ECCEEE-EEeCCCCceEEEeccCCCce
Q psy8875 675 PQTLSHPFSIST---FEDWLY-WSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 675 ~~~~~~P~gl~v---~~~~ly-wtd~~~~~v~~~~~~~G~~~ 712 (734)
+..+..|.++.- .+|-|+ +-|.+++-||.+.|-+|..+
T Consensus 248 p~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 248 PNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred cccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 345556655433 233322 45667777777776555543
No 377
>KOG1034|consensus
Probab=31.97 E-value=6.5e+02 Score=26.74 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=66.0
Q ss_pred ccceeeeeecc-ceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875 473 GHASLLFARKH-DIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD 550 (734)
Q Consensus 473 ~~~~l~~~~~~-~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~ 550 (734)
+.|+|..+... -|+.|++..... ..++.....+..|-+.|..-.|.++-.....|..-++....-..++-...-..-+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 57777776654 456667654443 3344455667778888888788888777888888777633222222111222344
Q ss_pred ceeeeccCCcEEEEeCC-CCeEEEEeCC
Q psy8875 551 GLAVDWIYSHIYWTDAH-KNTIELANFE 577 (734)
Q Consensus 551 glAvD~~~~~lY~td~~-~~~I~~~~ld 577 (734)
-|.|||...-.|++..+ ...|....|+
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 58888887777877766 4566666665
No 378
>KOG0278|consensus
Probab=31.95 E-value=5.7e+02 Score=26.09 Aligned_cols=197 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
..++||+ +...-.++....+-++.++++.-...-.-+......++.+-.= ...+-+.+....+.|+..+.....+..-
T Consensus 103 vk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 103 VKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEE
Q ss_pred EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 585 ~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
+ ..-..+..+.|.+...+|-.++.+. +.-.|-....+|-+-++..-..-|-=..+..+|++-.....+++++++
T Consensus 181 L-~~~s~VtSlEvs~dG~ilTia~gss-----V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 181 L-EFNSPVTSLEVSQDGRILTIAYGSS-----VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred E-ecCCCCcceeeccCCCEEEEecCce-----eEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEecc
Q ss_pred CCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCC
Q psy8875 665 GGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 665 G~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
...-...... +...--..|.+ -.|.+|-+-...+.|+.-...-++
T Consensus 255 TgeEi~~~nk-gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 255 TGEEIGSYNK-GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCceeeeccc-CCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
No 379
>KOG1524|consensus
Probab=31.78 E-value=6.1e+02 Score=28.74 Aligned_cols=91 Identities=9% Similarity=0.011 Sum_probs=43.9
Q ss_pred cceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875 474 HASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA 553 (734)
Q Consensus 474 ~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA 553 (734)
+.+++-+++..+..++-.+..-..+-..-..+.+--|.+ .+.-.++-...+.|..-+-. |..+.+++. .....+.+|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q-~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ-NEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc-chHHHHHhh-cCceeEEEE
Confidence 345555555555554443322111111111112222433 33334444445555544433 444554443 334567788
Q ss_pred eeccCCcEEEEeCC
Q psy8875 554 VDWIYSHIYWTDAH 567 (734)
Q Consensus 554 vD~~~~~lY~td~~ 567 (734)
-++.+.++.++..+
T Consensus 153 W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGG 166 (737)
T ss_pred ECCCCCceEEecCC
Confidence 88888888887764
No 380
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=31.72 E-value=6.5e+02 Score=26.69 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=42.2
Q ss_pred CCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCCC-Ccc-ceeeeccCCcEEEEeCC-----------CCeEEEEeCCCC
Q psy8875 514 TGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDKT-IAD-GLAVDWIYSHIYWTDAH-----------KNTIELANFEGT 579 (734)
Q Consensus 514 ~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~~-~p~-glAvD~~~~~lY~td~~-----------~~~I~~~~ldG~ 579 (734)
.++||++-.. ...+++++++.....-..+. .+. .|+ ..++-...++||+.-.. ...+++.++...
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~-~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIA-DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECC-CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 5677775322 23466666542222111121 221 122 22222356899987543 134677776544
Q ss_pred ceEEEEcCCCCCce-eE-EEeCCCCeEEEEe
Q psy8875 580 MRKVLVRSYLDEPR-SL-ALNPIDGWMYWSD 608 (734)
Q Consensus 580 ~~~~l~~~~l~~P~-~i-avD~~~g~LYwtd 608 (734)
.-+.+. .....++ +. ++-...++||+.-
T Consensus 96 ~W~~~~-~~~p~~~~~~~~~~~~~g~IYviG 125 (346)
T TIGR03547 96 SWQKLD-TRSPVGLLGASGFSLHNGQAYFTG 125 (346)
T ss_pred EEecCC-CCCCCcccceeEEEEeCCEEEEEc
Confidence 433332 1121222 22 1112478999874
No 381
>KOG0640|consensus
Probab=31.27 E-value=6.4e+02 Score=26.50 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE--EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL--VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l--~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
...+..|++.|. ..|..+.+..+.|..+++.-...+.. +-......+.|.++|...+|.+... .+.+...+.+..
T Consensus 172 ~devn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd--Hp~~rlYdv~T~ 248 (430)
T KOG0640|consen 172 VDEVNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD--HPTLRLYDVNTY 248 (430)
T ss_pred cCcccceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC--CCceeEEeccce
Confidence 345567777754 56677777777787777653322111 1134556789999998888877652 233444443322
Q ss_pred ceEEEEEc--CCCCceeE---EEecCCCeEEEEeCCCCeEEEEe
Q psy8875 624 HRNMVIVS--DIKWPNGL---TLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 624 ~~~~lv~~--~l~~P~gl---avD~~~~~LYw~D~~~~~I~~~~ 662 (734)
+-+++. +-++..+| -.. .+++||++-++.+.|...+
T Consensus 249 --QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 249 --QCFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWD 289 (430)
T ss_pred --eEeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeec
Confidence 222322 11222222 232 5789999999999888743
No 382
>KOG0307|consensus
Probab=31.03 E-value=2e+02 Score=35.21 Aligned_cols=164 Identities=14% Similarity=0.057 Sum_probs=79.0
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC---CCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL---DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l---~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
..+.||.+....++|.-+....+.|.+.+|+-.....-. ... ..+..|+-+-.-..|+-+-. ..+++..-++...
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~-~~~~~~~eI~~lsWNrkvqhILAS~s-~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP-GSQAPPSEIKCLSWNRKVSHILASGS-PSGRAVIWDLRKK 194 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC-CCCCCcccceEeccchhhhHHhhccC-CCCCceeccccCC
Confidence 356789999899999999888999999998753211111 111 11222222211112222221 1123333333332
Q ss_pred ceEEEEEcCC---CCceeEEEecCCCeEEEEeCC---CCeEEEEecC--CCceEEEEcCCCCCCCCeEEEE--ECCEEEE
Q psy8875 624 HRNMVIVSDI---KWPNGLTLDLVQRRLYWVDAK---LNEISSCDYN--GGNRRLVLYSPQTLSHPFSIST--FEDWLYW 693 (734)
Q Consensus 624 ~~~~lv~~~l---~~P~glavD~~~~~LYw~D~~---~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v--~~~~lyw 693 (734)
+.+|-.... ..-++|++.+..-.-.|+-+. ...|..-++. .+-.+++ .. +-....+|.+ .+.+|..
T Consensus 195 -~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~--H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 195 -KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EG--HQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred -CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh-cc--cccceeeeccCCCCchhhh
Confidence 111111111 123477887765544444332 2234443322 2222222 11 1122344555 2347777
Q ss_pred EeCCCCceEEEeccCCCceEEEe
Q psy8875 694 SDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 694 td~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+-...++|+.-|..+|+.+-.+.
T Consensus 271 SsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred cccCCCCeeEecCCCceEeeecC
Confidence 77777778877777776655543
No 383
>PHA03098 kelch-like protein; Provisional
Probab=30.85 E-value=8.4e+02 Score=27.74 Aligned_cols=188 Identities=12% Similarity=0.046 Sum_probs=88.3
Q ss_pred CCeEEEEEeCC------CcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCC-----CCeEEEEeCCCCce
Q psy8875 514 TGMIFWSDISE------KKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAH-----KNTIELANFEGTMR 581 (734)
Q Consensus 514 ~~~lyw~d~~~------~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~-----~~~I~~~~ldG~~~ 581 (734)
.+.||+.-... ..+++.++....- ..+. .+..|+ +.++-..+++||+.-.. ...+++.++....-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~-~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVP-ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee--eECC-CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 56777764321 2466666653221 1111 222222 22222346889987543 24566777654433
Q ss_pred EEEEcCCCCCce-eEEEeCCCCeEEEEecC-C----CceEEEeccCCCceEEEEEcCCCCce-eEEEecCCCeEEEEeCC
Q psy8875 582 KVLVRSYLDEPR-SLALNPIDGWMYWSDWG-Q----NAKIERAGMDGSHRNMVIVSDIKWPN-GLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 582 ~~l~~~~l~~P~-~iavD~~~g~LYwtd~~-~----~~~I~~~~ldG~~~~~lv~~~l~~P~-glavD~~~~~LYw~D~~ 654 (734)
+.+ ..+..|+ +.++-..+++||+.--. . ...+++.++....-+. + ..+..|. +.+.-..+++||+.-..
T Consensus 371 ~~~--~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~-~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 REE--PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-G-SPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred eeC--CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-c-CCCCccccCceEEEECCEEEEECCc
Confidence 322 2233333 12222246899997521 1 1457777765432221 1 1222121 22222357899988532
Q ss_pred --------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-----CceEEEeccCC
Q psy8875 655 --------LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-----KAIYKANKFTG 709 (734)
Q Consensus 655 --------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-----~~v~~~~~~~G 709 (734)
...+++++.....=+.+...+ ....-.++++.+++||+.-..+ +.|.+.+..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 224777665543322222111 1111234566789999975432 45666665433
No 384
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=30.71 E-value=3.4e+02 Score=30.67 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=46.4
Q ss_pred eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCc
Q psy8875 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPL 725 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~ 725 (734)
+.+.+.|..+.++-.+..++..+...+.+-..|-+.++.+|..--..+..|.+.+++.. ++.++....-.+|+
T Consensus 414 ~~G~~~ikLvlid~~tLev~kes~~~i~~~S~l~~~~~~iyaVv~~~~g~~~L~rF~~~-L~~~a~S~~eV~P~ 486 (489)
T PF05262_consen 414 CSGNAAIKLVLIDPETLEVKKESEDEISWQSSLIVDGQMIYAVVKKDNGKWYLGRFDSN-LSLFAKSEVEVLPF 486 (489)
T ss_pred cCCchheEEEecCcccceeeeeccccccccCceEEcCCeEEEEEEcCCCeEEEeecCcc-hHHHhcCccccCCC
Confidence 45667888888888888888776655555555666888888655233456777777766 44443222233454
No 385
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.54 E-value=1.1e+03 Score=29.25 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=16.8
Q ss_pred CeEEEEeCCCCeEEEEecCCCc
Q psy8875 646 RRLYWVDAKLNEISSCDYNGGN 667 (734)
Q Consensus 646 ~~LYw~D~~~~~I~~~~~dG~~ 667 (734)
++.|..|.. +.+||++|.|..
T Consensus 773 d~aYAGDl~-GnlWRFdLsg~~ 793 (1036)
T COG3419 773 DYAYAGDLG-GNLWRFDLSGNA 793 (1036)
T ss_pred EEEEeeccC-CcEEEEEecCCC
Confidence 477877854 789999999874
No 386
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=30.48 E-value=75 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=17.1
Q ss_pred EEEEECCEEEEEeCCCCceEEEecc
Q psy8875 683 SISTFEDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 683 gl~v~~~~lywtd~~~~~v~~~~~~ 707 (734)
++++.++.||+.... +.|+.++..
T Consensus 16 ~~~v~~g~vyv~~~d-g~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD-GNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TT-SEEEEEETT
T ss_pred CCEEECCEEEEEcCC-CEEEEEeCC
Confidence 347889999999984 778888754
No 387
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=30.35 E-value=40 Score=28.85 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=27.9
Q ss_pred cceeeeeecceeeeeeecc--eEEEeccccCCCCcCcccc
Q psy8875 3 SKCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYD 40 (734)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 40 (734)
..+|||...+...++.... +.|+++......||.+.|.
T Consensus 73 ~~~~Cg~~~~~~~~s~~~~~~i~f~s~~~~~~~GF~~~y~ 112 (113)
T cd00041 73 LGRFCGSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYS 112 (113)
T ss_pred ceeeECCCCCCCEEecCCEEEEEEEeCCCCCCCCEEEEEE
Confidence 4689998884433333333 7799999989999999886
No 388
>KOG0307|consensus
Probab=30.29 E-value=3.9e+02 Score=32.84 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=84.7
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC---CCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK---TIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~---~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
...+.+|+|.+..+.+.-+....+.|+.-+++.-... ...... ..+..|+-.-.-.+|+-+-..++++.+.++..
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK 193 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence 4567889999888778777777889998888742111 111112 22223333323345666666677888888876
Q ss_pred CceEEEEcC--CCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCc--eEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 579 TMRKVLVRS--YLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSH--RNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 579 ~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~--~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
+...+-+.. ...+-.+|+.+|..-.-.|+..+ ..+.|..-+|--.. .+++ ...-....+|.+-....+|..+-
T Consensus 194 ~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 194 KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchhhhcc
Confidence 632221111 11234477887776554444332 23445444432211 1211 11112233444444455677777
Q ss_pred CCCCeEEEEecCC
Q psy8875 653 AKLNEISSCDYNG 665 (734)
Q Consensus 653 ~~~~~I~~~~~dG 665 (734)
.+.++|..-+...
T Consensus 273 gkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 273 GKDNRIICWNPNT 285 (1049)
T ss_pred cCCCCeeEecCCC
Confidence 7777777766543
No 389
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=29.87 E-value=1.2e+02 Score=26.92 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=29.6
Q ss_pred EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568 (734)
Q Consensus 507 ~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~ 568 (734)
-|++||..-.|..+|...+.|..-... +.-.-.|+|+|+.++.+.-+....
T Consensus 11 ~i~LDp~GYfiI~~d~~~~~i~a~h~~-----------n~I~~~Gla~Dpetge~i~~~g~~ 61 (119)
T PF14251_consen 11 FIDLDPAGYFIIYVDREAGEICAEHYT-----------NDIDDKGLAVDPETGEVIPCRGKV 61 (119)
T ss_pred ccccCCCccEEEEEeCCCCeeeHhhcc-----------CccCcccceeCCCCCCEEEEecCC
Confidence 356676555555555544444332221 112335899999999887776543
No 390
>KOG0295|consensus
Probab=29.56 E-value=7.4e+02 Score=26.66 Aligned_cols=185 Identities=12% Similarity=0.029 Sum_probs=89.8
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
+.++.+-|.+.+| .+-...+.|....++.|.-..++.. .....+-++|. ..+.|+-+-+...+|.+.-+..+..+.+
T Consensus 196 vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~~~k~~ 272 (406)
T KOG0295|consen 196 VSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATKQCKAE 272 (406)
T ss_pred eeeEEEEecCCee-eecccccceeEEecccceeEEeccC-chHhEEEEEec-CCeeEEEecCCCceEEEEEeccchhhhh
Confidence 4455666554332 2344567788888886554443332 23345566665 5577888877777777766554433322
Q ss_pred EcCCCCCceeEEEeCCCC-------------eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEE
Q psy8875 585 VRSYLDEPRSLALNPIDG-------------WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651 (734)
Q Consensus 585 ~~~~l~~P~~iavD~~~g-------------~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~ 651 (734)
+...-....-|++-|..- .-|.+.......|...++.-..-..-+.....|..++++.+.+++|+ +
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-S 351 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-S 351 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE-E
Confidence 211111112222222211 01111111123343344432222222335678999999975555554 4
Q ss_pred eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEe
Q psy8875 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSD 695 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd 695 (734)
-+..+.|...++....-...+.. .-..-..|++.....|++.
T Consensus 352 caDDktlrvwdl~~~~cmk~~~a--h~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQCMKTLEA--HEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred EecCCcEEEEEeccceeeeccCC--CcceeEEEecCCCCceEEe
Confidence 44456677766654433322211 1111234555566666654
No 391
>PF12920 TcdA_TcdB_pore: TcdA/TcdB pore forming domain; InterPro: IPR024769 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the pore forming domain of TcdA and TcdB. It is also found in other toxins. ; GO: 0009405 pathogenesis
Probab=29.28 E-value=6.6e+02 Score=29.62 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=9.8
Q ss_pred CCeEEEEEeCCCcEEEEecC
Q psy8875 514 TGMIFWSDISEKKIYKAPID 533 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~ 533 (734)
.++|++.=.+.+..|.+.|.
T Consensus 467 ~~kLsY~l~G~gG~y~l~L~ 486 (663)
T PF12920_consen 467 RGKLSYSLIGAGGEYQLSLN 486 (663)
T ss_pred hCcEEEEEECCCeEEEEEEc
Confidence 44555444444445555554
No 392
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.15 E-value=6.9e+02 Score=26.23 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=35.3
Q ss_pred EEEEeCCCCceEEEEcCCCCC-------ceeEEEeCCCCeEEEEecCC--CceEEEeccCCCceEEEE
Q psy8875 571 IELANFEGTMRKVLVRSYLDE-------PRSLALNPIDGWMYWSDWGQ--NAKIERAGMDGSHRNMVI 629 (734)
Q Consensus 571 I~~~~ldG~~~~~l~~~~l~~-------P~~iavD~~~g~LYwtd~~~--~~~I~~~~ldG~~~~~lv 629 (734)
|...+.+....+.|....+.+ ...|.-||.+..|+++-... +--|++++..+...+.|+
T Consensus 80 VH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 80 VHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred EEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeecc
Confidence 444444444455555555444 45899999999999996321 235667665555555444
No 393
>KOG2394|consensus
Probab=28.89 E-value=9e+02 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=20.1
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEec
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPI 532 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l 532 (734)
.+...|.|.+....+|.+-...+.++..+.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 456677777777777777666666665543
No 394
>KOG2110|consensus
Probab=28.16 E-value=7.8e+02 Score=26.50 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc-eeeeccCCcEEEEeC---CCCeEEEEeCCCC
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG-LAVDWIYSHIYWTDA---HKNTIELANFEGT 579 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g-lAvD~~~~~lY~td~---~~~~I~~~~ldG~ 579 (734)
.+.+|-+. .++|.+.= ...||..++........+- ....+|.| +|+-+...+-|.+-. ..+.|.++++..-
T Consensus 89 ~IL~VrmN--r~RLvV~L--ee~IyIydI~~MklLhTI~-t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRMN--RKRLVVCL--EESIYIYDIKDMKLLHTIE-TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEEc--cceEEEEE--cccEEEEecccceeehhhh-ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 44455444 44554442 2237777766322222221 12234553 455555565566533 3678999988776
Q ss_pred ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe-cc-CCCceEEEEEcCC--CCceeEEEecCCCeEEEEeCCC
Q psy8875 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA-GM-DGSHRNMVIVSDI--KWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~-~l-dG~~~~~lv~~~l--~~P~glavD~~~~~LYw~D~~~ 655 (734)
.....+...-.....||+++ .|.|.-|... .+.|.|+ .. +|+....+ ..+. ..-..|++++....|-.+ +.+
T Consensus 164 ~~v~~I~aH~~~lAalafs~-~G~llATASe-KGTVIRVf~v~~G~kl~eF-RRG~~~~~IySL~Fs~ds~~L~~s-S~T 239 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSP-DGTLLATASE-KGTVIRVFSVPEGQKLYEF-RRGTYPVSIYSLSFSPDSQFLAAS-SNT 239 (391)
T ss_pred eeeeEEEecCCceeEEEECC-CCCEEEEecc-CceEEEEEEcCCccEeeee-eCCceeeEEEEEEECCCCCeEEEe-cCC
Confidence 66666655566778999997 5777777643 4555443 33 44432222 1121 123467888766655433 344
Q ss_pred CeEEEEe
Q psy8875 656 NEISSCD 662 (734)
Q Consensus 656 ~~I~~~~ 662 (734)
..|..+.
T Consensus 240 eTVHiFK 246 (391)
T KOG2110|consen 240 ETVHIFK 246 (391)
T ss_pred CeEEEEE
Confidence 4444433
No 395
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=28.00 E-value=7.5e+02 Score=26.22 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCeEEEEEeCC-CcEEEEecCCCCce-EEEEeC----CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE
Q psy8875 514 TGMIFWSDISE-KKIYKAPIDEGSER-TVVIEE----DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV 585 (734)
Q Consensus 514 ~~~lyw~d~~~-~~I~~~~l~~g~~~-~~~~~~----~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~ 585 (734)
...|++.+... +.|..++++.+... ++.+.. ++..+.++...+.+..||.. ....+|.+.+..|.....+-
T Consensus 55 ~~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~-~~~~~l~~~n~~G~~~~~~~ 131 (333)
T PF13970_consen 55 KKYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNS-YAFPKLFLFNSQGEVLKKID 131 (333)
T ss_dssp EEEEEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEE-GGGTEEEEE-TT--EEEEEE
T ss_pred cEEEEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEec-CCcceEEEEcCCCeEEEEEe
Confidence 33444555554 78888998865443 222221 23344445544344455554 45577999999988776654
No 396
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=27.77 E-value=7.3e+02 Score=26.03 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCeEEEEEeC-----CCcEEEEecCCCCce-EEEEeCCCCCcc-ceeeeccCCcEEEEeCC-----CCeEEEEeCCCCce
Q psy8875 514 TGMIFWSDIS-----EKKIYKAPIDEGSER-TVVIEEDKTIAD-GLAVDWIYSHIYWTDAH-----KNTIELANFEGTMR 581 (734)
Q Consensus 514 ~~~lyw~d~~-----~~~I~~~~l~~g~~~-~~~~~~~~~~p~-glAvD~~~~~lY~td~~-----~~~I~~~~ldG~~~ 581 (734)
.+.||++-.. ...+++++++..... .......+..|+ ..++-...++||+.-.. ...+++.++....-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 5788887532 235777777643321 111112232232 22222356899987432 34677777765443
Q ss_pred EEEEcCCCC-Ccee-EEEeCCCCeEEEEe
Q psy8875 582 KVLVRSYLD-EPRS-LALNPIDGWMYWSD 608 (734)
Q Consensus 582 ~~l~~~~l~-~P~~-iavD~~~g~LYwtd 608 (734)
+.+. .+. .|+. -++-..+++||+.-
T Consensus 152 ~~~~--~~p~~~r~~~~~~~~~~~iYv~G 178 (323)
T TIGR03548 152 FELP--DFPGEPRVQPVCVKLQNELYVFG 178 (323)
T ss_pred eECC--CCCCCCCCcceEEEECCEEEEEc
Confidence 3332 111 1221 11112468899885
No 397
>KOG1310|consensus
Probab=27.76 E-value=2.9e+02 Score=31.18 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=59.3
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
-+..|+|.. .|.+..+.....+|...+.-.-.....+-.+-..++..+.+-| .++.|.++-++...|.+.+++.....
T Consensus 52 CVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~ 130 (758)
T KOG1310|consen 52 CVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEG 130 (758)
T ss_pred eecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccc
Confidence 445666663 4444444444444444333211111111112222333333333 34567778888888999888732111
Q ss_pred ----------EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875 583 ----------VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM 620 (734)
Q Consensus 583 ----------~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l 620 (734)
....-.+....-||+-|..-..||+.. +.+.|...++
T Consensus 131 ~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas-EDGtirQyDi 177 (758)
T KOG1310|consen 131 GMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS-EDGTIRQYDI 177 (758)
T ss_pred ccccCccchhhhhhhhhhhhhheecCCCCCceEEEec-CCcceeeecc
Confidence 111123456678888887768999874 3466655544
No 398
>KOG0643|consensus
Probab=27.64 E-value=7e+02 Score=25.76 Aligned_cols=166 Identities=10% Similarity=0.077 Sum_probs=82.1
Q ss_pred ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc-EEEEeCC
Q psy8875 489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH-IYWTDAH 567 (734)
Q Consensus 489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~-lY~td~~ 567 (734)
+++|..+...-.....+..+|+|+.+.+| ++-...+.+...+...|... ..+. ....+..+.++.-... |+.+|..
T Consensus 39 s~nGerlGty~GHtGavW~~Did~~s~~l-iTGSAD~t~kLWDv~tGk~l-a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 39 SLNGERLGTYDGHTGAVWCCDIDWDSKHL-ITGSADQTAKLWDVETGKQL-ATWK-TNSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred ecCCceeeeecCCCceEEEEEecCCccee-eeccccceeEEEEcCCCcEE-EEee-cCCeeEEEeeccCCcEEEEEehhh
Confidence 34444444444445677788888765544 45555565666666544332 2222 2234456666643332 3444443
Q ss_pred ---CCeEEEEeCC-------CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-C--CC
Q psy8875 568 ---KNTIELANFE-------GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-D--IK 634 (734)
Q Consensus 568 ---~~~I~~~~ld-------G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~--l~ 634 (734)
...|.+.++. +......+...-..+.....+|....|.--. +.++|.+.++.... .++.. . -.
T Consensus 116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--e~G~is~~da~~g~--~~v~s~~~h~~ 191 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH--EDGSISIYDARTGK--ELVDSDEEHSS 191 (327)
T ss_pred cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec--CCCcEEEEEcccCc--eeeechhhhcc
Confidence 3455555543 3332222223346777777787776666554 35677776654321 22222 1 12
Q ss_pred CceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 635 WPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 635 ~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
.-+.|.+. .....|++-++...-..++
T Consensus 192 ~Ind~q~s-~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 192 KINDLQFS-RDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred cccccccc-CCcceEEecccCccceeee
Confidence 34555553 3445555544433333333
No 399
>KOG2066|consensus
Probab=27.57 E-value=1.1e+03 Score=28.13 Aligned_cols=137 Identities=11% Similarity=0.128 Sum_probs=63.2
Q ss_pred EEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC----CCeEEEEecCCCce-EEEeccCCCceEEEEEcCCCCce
Q psy8875 563 WTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI----DGWMYWSDWGQNAK-IERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 563 ~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~----~g~LYwtd~~~~~~-I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
-+-+..++|.+..+......... .--..+..||++|. .-+.|++. |..+- +...++=|....+++...-....
T Consensus 87 asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~G-G~aglvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 87 ASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSG-GMAGLVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred EEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeec-CcceEEEehhhhhcCccceeeecCccceE
Confidence 34444566666665433322211 12235689999986 23456665 32221 22223334333444444433344
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCC----CCeEEEEECCEEEEEeCCCC-ceEEEe
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLS----HPFSISTFEDWLYWSDWQQK-AIYKAN 705 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~----~P~gl~v~~~~lywtd~~~~-~v~~~~ 705 (734)
++.+ .+..|-||+-. .|..++.....+-+.+.-+.... .|--+.+.++...+.-|+.. .|.++.
T Consensus 165 ~i~W--~g~lIAWand~--Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKW--RGNLIAWANDD--GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEEe--cCcEEEEecCC--CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 5554 68889999754 34444443333333332211111 23345554444445556543 333443
No 400
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=27.21 E-value=8.8e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW 609 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~ 609 (734)
.+|-+-.....|++++++|+....-+ .+|.||....
T Consensus 161 t~yn~~e~~k~vw~~~fnGsyvdaRl--------------ynG~lYiv~r 196 (603)
T COG4880 161 TLYNLYESSKKVWVYNFNGSYVDARL--------------YNGELYIVAR 196 (603)
T ss_pred EEEEeccccceeEEEecCCceeeeee--------------eCCEEEEEEc
Confidence 34444333566777777776543221 4678888764
No 401
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=27.06 E-value=6.7e+02 Score=25.36 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=40.6
Q ss_pred eeeccceEEeecCCCceEEEe--c----CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC
Q psy8875 479 FARKHDIRKISLDHHEMTAIV--N----STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS 536 (734)
Q Consensus 479 ~~~~~~I~~i~l~~~~~~~l~--~----~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~ 536 (734)
+.+...|+.|+......+.+- . -.....++||.|.-++|.++.. .++=+|++++.|.
T Consensus 44 l~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-~GqNlR~npdtGa 106 (236)
T PF14339_consen 44 LGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-TGQNLRLNPDTGA 106 (236)
T ss_pred EeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-CCcEEEECCCCCC
Confidence 356788999988766655551 1 1234789999999999999853 5667788888554
No 402
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=26.61 E-value=38 Score=25.35 Aligned_cols=21 Identities=38% Similarity=0.931 Sum_probs=16.1
Q ss_pred eecCCCcEecCCCCccccccCc
Q psy8875 412 CECNEGYKLSSNRHTCIDIDEC 433 (734)
Q Consensus 412 C~C~~G~~l~~~~~~C~~~~eC 433 (734)
|.|++||.++.+ ..|+...+|
T Consensus 35 C~C~~G~v~~~~-~~CV~~~~C 55 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPSEC 55 (55)
T ss_dssp EEETTTEEEETT-SEEEEGGGC
T ss_pred CCCCCCeeEcCC-CCEEcHHHC
Confidence 999999998744 678766554
No 403
>KOG2314|consensus
Probab=26.49 E-value=6.7e+02 Score=28.59 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
+|.+|.-..-.+..+ .--..+++.||+|..++.-+...... +.|.+... +.....+..-.......|-.-|.++
T Consensus 428 eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~-~~~~~lVk~~dk~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN-IKKPSLVKELDKKFANTVFWSPKGR 505 (698)
T ss_pred EEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecC-CCchhhhhhhcccccceEEEcCCCc
Q ss_pred cEEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875 560 HIYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633 (734)
Q Consensus 560 ~lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l 633 (734)
.|-++... .+.++.++++-...+.+....-.....+.-|| +|+.+.|- .++++...|-.-+.--+.+.+
T Consensus 506 fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~----ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 506 FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTS----SSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EEEEEEecccccceEEEecchhhhhhccCccccccccceECC-CCCEEEEe----eehhhhccccceEEEEeecHH
No 404
>KOG1409|consensus
Probab=26.42 E-value=8.2e+02 Score=26.18 Aligned_cols=159 Identities=11% Similarity=0.148 Sum_probs=75.9
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC---CCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE---DKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~---~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
....+.++.|.....+||+-- .++.+..+.+........++.. ......++-.+.....++.+....+-.+...-.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~-~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQ-DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred CCCCceEeeeeccceEEEEEE-ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 345667888888777777653 3555665555422221111111 111223344443333333333333333333222
Q ss_pred CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--cCCCCceeEEEecCCCeEEEEeCCC
Q psy8875 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
|...--.+. ...+.++..|.. +.|+-|.+ ++|..+.+.-....++.. ....-...++.|+..++|| +-+..
T Consensus 146 ~~~lg~Y~~--~~~~t~~~~d~~--~~fvGd~~--gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf-Sg~~d 218 (404)
T KOG1409|consen 146 GNRLGGYNF--ETPASALQFDAL--YAFVGDHS--GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLF-SGASD 218 (404)
T ss_pred CCcccceEe--eccCCCCceeeE--EEEecccc--cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEE-ecccc
Confidence 221111110 123444444433 67777753 556655554443333332 3334456788896555555 55666
Q ss_pred CeEEEEecCCCc
Q psy8875 656 NEISSCDYNGGN 667 (734)
Q Consensus 656 ~~I~~~~~dG~~ 667 (734)
.+|...++-|..
T Consensus 219 ~~vi~wdigg~~ 230 (404)
T KOG1409|consen 219 HSVIMWDIGGRK 230 (404)
T ss_pred CceEEEeccCCc
Confidence 777777776643
No 405
>KOG4714|consensus
Probab=25.70 E-value=6.5e+02 Score=25.86 Aligned_cols=75 Identities=9% Similarity=0.093 Sum_probs=46.7
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCe-EEEEecCCCceEEEeccCC
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGW-MYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~-LYwtd~~~~~~I~~~~ldG 622 (734)
+.....++.++...+|...-...+.|.+.++... ....++...-....-+-++|+++. ||.+. +.+.+++.+..+
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s--edGslw~wdas~ 255 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS--EDGSLWHWDAST 255 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec--CCCcEEEEcCCC
Confidence 3446788889888999988888888877776432 222222222233445667777664 44443 347788877666
No 406
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=25.60 E-value=49 Score=28.18 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=24.6
Q ss_pred ceeeeeecceeeeeeecc--eEEEeccccCCCCcCccc
Q psy8875 4 KCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDY 39 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 39 (734)
.+|||.-.+...++.... +.|+++......||.+.|
T Consensus 73 ~~~cg~~~~~~i~s~~~~l~i~f~s~~~~~~~gF~~~y 110 (110)
T PF00431_consen 73 GRFCGSSPPPSIISSSNSLFIRFHSDSSNSSRGFKATY 110 (110)
T ss_dssp EEESSSSCCEEEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred eeccCCcCCccEEECCCEEEEEEEECCCCCCccEEEEC
Confidence 478884343332233222 779999999999998876
No 407
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=25.49 E-value=73 Score=21.13 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=17.0
Q ss_pred eccCCCCeeeCCCCCCCCCCCCCCCCCcCCC
Q psy8875 100 TCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130 (734)
Q Consensus 100 ~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C 130 (734)
.|.+. |+|+.. .+...|.+|+....|
T Consensus 7 ~C~~~-G~C~~~----~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGH-GTCVSP----CGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCC-CEEeCC----CCEEECCCCCcCCCC
Confidence 46655 788766 355678777766554
No 408
>KOG0313|consensus
Probab=25.46 E-value=8.9e+02 Score=26.23 Aligned_cols=147 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred eeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEc
Q psy8875 553 AVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVS 631 (734)
Q Consensus 553 AvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~ 631 (734)
+|-|......++-+..++|.+.++.......-+ .....-..|.+.|...+|--.-....-+++--.. +|+....-+..
T Consensus 265 ~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 265 SVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred eEEEcCCCceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~ 711 (734)
.-.|..++-..+.+..++++-+..+.+..-+......... .|+-.+++|+-+||..+..+.- .|.+
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply-----------dI~~h~DKvl~vdW~~~~~IvS---GGaD 409 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY-----------DIAGHNDKVLSVDWNEGGLIVS---GGAD 409 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce-----------eeccCCceEEEEeccCCceEEe---ccCc
Q ss_pred eEE
Q psy8875 712 LTA 714 (734)
Q Consensus 712 ~~~ 714 (734)
-++
T Consensus 410 ~~l 412 (423)
T KOG0313|consen 410 NKL 412 (423)
T ss_pred ceE
No 409
>KOG0301|consensus
Probab=25.29 E-value=1.1e+03 Score=27.49 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=59.3
Q ss_pred eEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc
Q psy8875 594 SLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 594 ~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~ 673 (734)
+++.=|.+ .|+|..+ .+..+...+|+..+++ .....-.+||++=...+ |.+-+..+.|...+++|.-......
T Consensus 145 Av~~l~e~--~~vTgsa--DKtIklWk~~~~l~tf-~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~ge~l~~~~g 217 (745)
T KOG0301|consen 145 AVASLPEN--TYVTGSA--DKTIKLWKGGTLLKTF-SGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDGEVLLEMHG 217 (745)
T ss_pred eeeecCCC--cEEeccC--cceeeeccCCchhhhh-ccchhheeeeEEecCCC--eEeecCCceEEEEeccCceeeeeec
Confidence 44444433 8888643 3334444445544433 33455678898843333 3455567788888888876655542
Q ss_pred CCCCCCCCeEEEE-ECCEEEEEeCCCCceEEE
Q psy8875 674 SPQTLSHPFSIST-FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 674 ~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~ 704 (734)
.-.+-++|+. ..+.+.++-...+.|...
T Consensus 218 ---htn~vYsis~~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 218 ---HTNFVYSISMALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred ---cceEEEEEEecCCCCeEEEecCCceEEEe
Confidence 3445667773 567777777766655444
No 410
>KOG0918|consensus
Probab=25.13 E-value=3e+02 Score=29.91 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=20.5
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.|-|.-..+.||++.+..+-|+..++..-
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 33333347899999998888888876543
No 411
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=24.80 E-value=9.8e+02 Score=26.54 Aligned_cols=64 Identities=6% Similarity=0.124 Sum_probs=37.1
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCC-CceE---EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceE
Q psy8875 639 LTLDLVQRRLYWVDAKLNEISSCDYNG-GNRR---LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIY 702 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I~~~~~dG-~~~~---~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~ 702 (734)
..+....++-.|...+++.+...+|.. +..- ...+.......-.||+...+.||.--..+.+++
T Consensus 139 ~Dv~~~dGryVw~~pgt~~f~vSdL~D~T~~d~~~~~ytAEsqPD~Ivgl~~~r~~I~~fG~~TiEvf 206 (469)
T PF11134_consen 139 VDVTRLDGRYVWVKPGTGYFFVSDLEDETKPDRYLDFYTAESQPDNIVGLAVWRREIWCFGASTIEVF 206 (469)
T ss_pred eEEEeccceEEEEeCCCceEEEeecccccCcchhhhhhhhccCCCceEEEEEeeeeEEEEecccEEEE
Confidence 455557788888777778888888665 3322 122222222223466677777777555544444
No 412
>KOG4283|consensus
Probab=24.74 E-value=8.2e+02 Score=25.59 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=44.5
Q ss_pred eeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccC--CcEEEEeCCCCeEEEEeCCCCceEEEEc
Q psy8875 509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY--SHIYWTDAHKNTIELANFEGTMRKVLVR 586 (734)
Q Consensus 509 ~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~--~~lY~td~~~~~I~~~~ldG~~~~~l~~ 586 (734)
-|-|...-+|.+..-.+.+..-+.+ ..+..+.+. ....+..-|.-+.. .-|..+-....+|...++........+.
T Consensus 108 ~WyP~DtGmFtssSFDhtlKVWDtn-TlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 108 IWYPIDTGMFTSSSFDHTLKVWDTN-TLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred EEeeecCceeecccccceEEEeecc-cceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 3444444455555555555555544 222222221 11222222222222 3355555556678888885444444444
Q ss_pred CCCCCceeEEEeCCCCeEEEEe
Q psy8875 587 SYLDEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 587 ~~l~~P~~iavD~~~g~LYwtd 608 (734)
+......++...|...++..|.
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred cccCceEEEEeccCceeEEEec
Confidence 4444444444444444554443
No 413
>KOG4497|consensus
Probab=24.48 E-value=4.7e+02 Score=27.69 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=50.3
Q ss_pred CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC
Q psy8875 523 SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG 602 (734)
Q Consensus 523 ~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g 602 (734)
..+.|+..++.. -.-.-.+..+......+.-.+.+++|.-+....-+|.+.+|.......+- -.-....|+++.+...
T Consensus 69 k~~~vqvwsl~Q-pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 69 KDPKVQVWSLVQ-PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQ 146 (447)
T ss_pred ccceEEEEEeec-ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCc
Confidence 344555555542 22223334444444555666677788777777789999998876554433 2233448999988776
Q ss_pred eEEEEe
Q psy8875 603 WMYWSD 608 (734)
Q Consensus 603 ~LYwtd 608 (734)
++-...
T Consensus 147 f~ai~s 152 (447)
T KOG4497|consen 147 FCAILS 152 (447)
T ss_pred eeeeee
Confidence 665554
No 414
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=24.08 E-value=9.9e+02 Score=26.31 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=27.9
Q ss_pred eEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecC
Q psy8875 485 IRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID 533 (734)
Q Consensus 485 I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~ 533 (734)
|+..+..|..+..+.-...+++++.|...+..|-+. .++.++..++.
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~--~dG~v~vy~~~ 109 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQ--SDGTVRVYDLF 109 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEE--cCCEEEEEeCC
Confidence 555555565555544334788899997644444443 45666666665
No 415
>KOG0309|consensus
Probab=23.29 E-value=1.1e+03 Score=28.17 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=16.5
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
.+...++|++..+-....|+-+..+.|...+++
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 344455665543333444555555555555554
No 416
>KOG0306|consensus
Probab=23.08 E-value=1.3e+03 Score=27.40 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=82.8
Q ss_pred EEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe------CCCCceEEEEc------
Q psy8875 519 WSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN------FEGTMRKVLVR------ 586 (734)
Q Consensus 519 w~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~------ldG~~~~~l~~------ 586 (734)
++...++.|..+++......+.+-. --.....|++-+. +.=++|-+...+|...+ ..|+.+++|-.
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRA-HDGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhc-cccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 3444566666666654433322211 1123445555433 33344444444443332 34555444321
Q ss_pred CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-eeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
.--.....+++.|...+|-++-.. ..+.+.-||.-...+-+.+ -..| ..|-|.+ ...|.++-+....|....+|=
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLd--nTVkVyflDtlKFflsLYG-HkLPV~smDIS~-DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLD--NTVKVYFLDTLKFFLSLYG-HKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEecc--CeEEEEEecceeeeeeecc-cccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence 112345577777766666666532 4455555554322221211 1123 3444543 445666655444444444543
Q ss_pred C-ceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEE
Q psy8875 666 G-NRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 666 ~-~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~ 704 (734)
+ =++.++.. -..-+.+.+ ...++|||-.+.+.|.+.
T Consensus 582 GDCHKS~fAH---dDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 582 GDCHKSFFAH---DDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred chhhhhhhcc---cCceeEEEEcccceeEEEecCcceEEee
Confidence 3 23333321 112244444 578999998776666544
No 417
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=23.06 E-value=9.4e+02 Score=25.66 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCC-----cEEEEecCCCCceEEEEeCCCCC----------ccceeeecc-CCcEEEEeCCCCeEEEEeCC
Q psy8875 514 TGMIFWSDISEK-----KIYKAPIDEGSERTVVIEEDKTI----------ADGLAVDWI-YSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 514 ~~~lyw~d~~~~-----~I~~~~l~~g~~~~~~~~~~~~~----------p~glAvD~~-~~~lY~td~~~~~I~~~~ld 577 (734)
++++|++....+ +||-.... .+..+++..-.+.. --.+.+|.. +|.+||.|.....|.|....
T Consensus 193 nGH~Y~asLSG~~~SPLKiY~w~tP-ts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 193 NGHSYLASLSGGKASPLKIYYWETP-TSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVS 271 (442)
T ss_pred CCeEEEEeccCCCCCceEEEEecCC-CCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEcc
Confidence 678888776543 35544433 23445544322222 124777744 35689998888888888776
Q ss_pred CC
Q psy8875 578 GT 579 (734)
Q Consensus 578 G~ 579 (734)
+-
T Consensus 272 n~ 273 (442)
T PF15416_consen 272 NY 273 (442)
T ss_pred Cc
Confidence 53
No 418
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=23.05 E-value=1.9e+02 Score=25.59 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=33.3
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW 609 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~ 609 (734)
-+-|++||.+-.|...|...+.|..-.. .+.-.-.|+|+||.+|.+.-+..
T Consensus 9 ~R~i~LDp~GYfiI~~d~~~~~i~a~h~----------~n~I~~~Gla~Dpetge~i~~~g 59 (119)
T PF14251_consen 9 QRFIDLDPAGYFIIYVDREAGEICAEHY----------TNDIDDKGLAVDPETGEVIPCRG 59 (119)
T ss_pred cCccccCCCccEEEEEeCCCCeeeHhhc----------cCccCcccceeCCCCCCEEEEec
Confidence 3568888887777777766555543221 12223458999999998877763
No 419
>KOG4292|consensus
Probab=22.69 E-value=81 Score=34.71 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=54.0
Q ss_pred eeecceeeeeeecc--eEEEeccccCCCCcCccccCCCCCCCCcCCCCCCCCCceecCCCceecCcCccCCCCCCCCCCc
Q psy8875 8 GLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVD 85 (734)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~d 85 (734)
|.-+.++.+++... ++++.+..+....+.+.+....+ .+-++. +..-.+++|.+-...|.++++.||.|.++
T Consensus 367 ~~~ls~~~~ss~s~g~~l~~~~~~i~~~~~~~~~~~~~~-----~e~~~~-~s~~~~g~~~~~g~~~~~pn~~dc~~~~~ 440 (454)
T KOG4292|consen 367 GAGLSPELVSSASLGLSLIDLSMGVVVGEDSFRILPRNP-----TELPGG-PSASENGKGKNMGYNSITPNRDDCDDLEL 440 (454)
T ss_pred cCCCCccccccccccceeeeeceeeEeecccccccccCc-----ccCCCC-ccccccCCCCCCCCcccCCCcccccceec
Confidence 34444555555544 77888887778888888888776 344455 66666788899999999999999999886
Q ss_pred c
Q psy8875 86 E 86 (734)
Q Consensus 86 e 86 (734)
-
T Consensus 441 d 441 (454)
T KOG4292|consen 441 D 441 (454)
T ss_pred c
Confidence 4
No 420
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=22.67 E-value=4.1e+02 Score=23.63 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=35.5
Q ss_pred eEEEecCCCeEEEEeCC----CCeEEEEecCCCceEEEEcC--CCCCCCCeEEEEECCEEEEEeCC
Q psy8875 638 GLTLDLVQRRLYWVDAK----LNEISSCDYNGGNRRLVLYS--PQTLSHPFSISTFEDWLYWSDWQ 697 (734)
Q Consensus 638 glavD~~~~~LYw~D~~----~~~I~~~~~dG~~~~~i~~~--~~~~~~P~gl~v~~~~lywtd~~ 697 (734)
||.| +|.|||.-.. ...|.++|+....-+.+... .........|...+|+|-.....
T Consensus 1 gici---nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 63 (129)
T PF08268_consen 1 GICI---NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN 63 (129)
T ss_pred CEEE---CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec
Confidence 4554 6889998543 66899999887666555431 12233344566677777765543
No 421
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=22.48 E-value=76 Score=26.65 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=25.0
Q ss_pred ceeeeeecceeeeeee-c--ceEEEeccccCCCCcCccc
Q psy8875 4 KCYIGLYIGVLVVIRS-V--DALYRLERSVIDDKIGVDY 39 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 39 (734)
.+|||...+...+... . .+.|+++......||.+.|
T Consensus 64 ~~~Cg~~~~~~~~~s~~n~~~i~f~s~~~~~~~GF~~~y 102 (102)
T smart00042 64 GRFCGSELPPPVISSSSNSLTVTFVSDSSVQKRGFSARY 102 (102)
T ss_pred EEEecCcCCCCeEEcCCCEEEEEEEeCCCCCCCCeEEEC
Confidence 4899988655434332 2 2779999888888998765
No 422
>KOG0293|consensus
Probab=22.01 E-value=1.1e+03 Score=25.97 Aligned_cols=126 Identities=16% Similarity=0.046 Sum_probs=69.3
Q ss_pred eEEEEeCCCCceEEEEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeE
Q psy8875 570 TIELANFEGTMRKVLVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648 (734)
Q Consensus 570 ~I~~~~ldG~~~~~l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~L 648 (734)
.+...+.+....+.....+ ...+...+--|. |.=|++.. ....|...++||......-....+....|||.+.+..|
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD-g~~~V~Gs-~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD-GFRFVTGS-PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccC-CceeEecC-CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEE
Confidence 3555555544444444333 345666666663 45566653 34788899999975433222233455788888888899
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEEE-CCEEEEEeCCCCceE
Q psy8875 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSISTF-EDWLYWSDWQQKAIY 702 (734)
Q Consensus 649 Yw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~-~~~lywtd~~~~~v~ 702 (734)
|.+.. ..+|.-++....--+-+++ ..+| .++.+. .+++..++.....|.
T Consensus 370 l~v~~-d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 370 LLVTV-DKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred EEEec-ccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 88873 3566666654432222322 2233 345553 345555554444443
No 423
>KOG3567|consensus
Probab=21.85 E-value=1.2e+02 Score=33.47 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=35.4
Q ss_pred CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 525 KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 525 ~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.+|.++.+......+..-...+.-|.||.+| ..|..|.+|...+.+......++
T Consensus 445 ~~ilvi~~~n~~~l~~~g~~~fylphgl~~d-kdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 445 DTILVIDPNNAAVLQSSGKNLFYLPHGLSID-KDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred ceEEEEcCcchhhhhhccCCceecCCcceec-CCCcEEeecccchhhhhcccccc
Confidence 4566666653333332223446679999999 78888888888777776665544
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=21.67 E-value=1.2e+03 Score=26.30 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=64.2
Q ss_pred CCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCC---CCeEEEEeCCCCceEEEEcC
Q psy8875 514 TGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAH---KNTIELANFEGTMRKVLVRS 587 (734)
Q Consensus 514 ~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~---~~~I~~~~ldG~~~~~l~~~ 587 (734)
.++||.+-.. ...+.+.++..+ .-..+. .+..|+ +.++-..+++||+.-.. ...+++.++....-..+ .
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n--~W~~~~-~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~ 392 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDA--AWVNMP-SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG--P 392 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCC--eEEECC-CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC--C
Confidence 6899988543 234666665422 222222 333333 33333457999998543 23466666654433322 2
Q ss_pred CCCCce---eEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc---eeEEEecCCCeEEEEeC
Q psy8875 588 YLDEPR---SLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP---NGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 588 ~l~~P~---~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P---~glavD~~~~~LYw~D~ 653 (734)
.+..|+ ++++ .+|+||+.- +..++.+.+. +.-..+ ..+..| .|+++ .+++||++-.
T Consensus 393 ~m~~~r~~~~~~~--~~~~IYv~G----G~~e~ydp~~-~~W~~~-~~m~~~r~~~~~~v--~~~~IYviGG 454 (480)
T PHA02790 393 STYYPHYKSCALV--FGRRLFLVG----RNAEFYCESS-NTWTLI-DDPIYPRDNPELII--VDNKLLLIGG 454 (480)
T ss_pred CCCCccccceEEE--ECCEEEEEC----CceEEecCCC-CcEeEc-CCCCCCccccEEEE--ECCEEEEECC
Confidence 333343 2222 478999985 2356666543 232222 223332 24444 5888998853
No 425
>smart00051 DSL delta serrate ligand.
Probab=21.47 E-value=1.4e+02 Score=23.27 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=12.7
Q ss_pred cccCCCCCccCCCccccc
Q psy8875 202 SCACPEGLKLLPDLLMCA 219 (734)
Q Consensus 202 ~C~C~~G~~~~~~~~~~~ 219 (734)
.-.|+++|.|..|...|.
T Consensus 18 rv~C~~~~yG~~C~~~C~ 35 (63)
T smart00051 18 RVTCDENYYGEGCNKFCR 35 (63)
T ss_pred EeeCCCCCcCCccCCEeC
Confidence 346888888887776553
No 426
>KOG1897|consensus
Probab=21.42 E-value=1.6e+03 Score=27.73 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCeEEEEeCCC-CceEEEEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-eeEEEecC
Q psy8875 568 KNTIELANFEG-TMRKVLVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NGLTLDLV 644 (734)
Q Consensus 568 ~~~I~~~~ldG-~~~~~l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~glavD~~ 644 (734)
.++|.+..+.- ...+.+.+.. -..|.+|.+ .+|+|..+= +..-+|+.... .++.-+...+..| ..|.|-..
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~I-n~~vrLye~t~---~~eLr~e~~~~~~~~aL~l~v~ 879 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAGI-NQSVRLYEWTT---ERELRIECNISNPIIALDLQVK 879 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEec-CcEEEEEEccc---cceehhhhcccCCeEEEEEEec
Confidence 57888777654 3333333222 234444444 677666543 33233433322 2333333344444 35555566
Q ss_pred CCeEEEEeCCCC-eEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875 645 QRRLYWVDAKLN-EISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 645 ~~~LYw~D~~~~-~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~ 705 (734)
++.|+++|.... .+..+..+-.+...++.. -...|-.++.+.++..|.-.-..+-++.+.
T Consensus 880 gdeI~VgDlm~Sitll~y~~~eg~f~evArD-~~p~Wmtaveil~~d~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 880 GDEIAVGDLMRSITLLQYKGDEGNFEEVARD-YNPNWMTAVEILDDDTYLGAENSGNLFTVR 940 (1096)
T ss_pred CcEEEEeeccceEEEEEEeccCCceEEeehh-hCccceeeEEEecCceEEeecccccEEEEE
Confidence 899999996432 344444444445555542 233455667775555555433344444443
No 427
>KOG4227|consensus
Probab=21.31 E-value=1.1e+03 Score=25.66 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=41.2
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC--CCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE--DKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~--~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
.++..|+|+..+.+|| +....++|.+-++. .+....++.. +-..+.+|.+.+. .+++.+-...++|...+..
T Consensus 106 SNIF~L~F~~~N~~~~-SG~~~~~VI~HDiE-t~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLY-SGERWGTVIKHDIE-TKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred cceEEEEEccCCeeEe-cCCCcceeEeeecc-cceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEecc
Confidence 4677888886555555 33344556666655 2222222221 2235678888876 6666666666666666553
No 428
>KOG1538|consensus
Probab=21.22 E-value=1.4e+03 Score=26.88 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=28.2
Q ss_pred eCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE-------ECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST-------FEDWLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v-------~~~~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
-..+++|..-+..|.....|-. +.....| ++|+. ..+.+=++||+.- .++...+|+.+.
T Consensus 150 G~~nGTIsiRNk~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT--LSFy~LsG~~Ig 216 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNGEEKVKIER-PGGSNSPIWSICWNPSSGEGRNDILAVADWGQT--LSFYQLSGKQIG 216 (1081)
T ss_pred eccCceEEeecCCCCcceEEeC-CCCCCCCceEEEecCCCCCCccceEEEEeccce--eEEEEecceeec
Confidence 3344555544555544443332 1122222 45555 2356778888732 344455665443
No 429
>KOG0290|consensus
Probab=20.64 E-value=9.9e+02 Score=25.01 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe
Q psy8875 491 DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543 (734)
Q Consensus 491 ~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~ 543 (734)
.+...++|+..-+.+..|+|......+|.+-...+.++.++|..-...+++..
T Consensus 185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 34456778888888999999876678888888889999999985444555554
Done!