Query psy8875
Match_columns 734
No_of_seqs 579 out of 3582
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 21:36:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0c_C LDL receptor, low-densi 100.0 7E-111 2E-115 987.7 44.8 611 50-728 20-650 (791)
2 1n7d_A LDL receptor, low-densi 100.0 1E-107 3E-112 958.1 47.2 610 51-728 3-632 (699)
3 3m0c_C LDL receptor, low-densi 100.0 2.9E-83 1E-87 753.1 39.3 571 48-689 60-654 (791)
4 1n7d_A LDL receptor, low-densi 100.0 4.1E-79 1.4E-83 715.8 47.1 571 48-689 42-636 (699)
5 3p5b_L Low density lipoprotein 100.0 3.4E-58 1.2E-62 505.2 41.1 334 390-727 1-337 (400)
6 3v65_B Low-density lipoprotein 100.0 9.9E-57 3.4E-61 491.7 37.7 335 388-728 2-336 (386)
7 3v64_C Agrin; beta propeller, 100.0 6E-49 2E-53 424.1 37.5 293 430-728 1-293 (349)
8 4a0p_A LRP6, LRP-6, low-densit 100.0 4.7E-45 1.6E-49 421.3 37.2 284 429-717 264-558 (628)
9 3s94_A LRP-6, low-density lipo 100.0 1.6E-44 5.5E-49 416.5 38.7 290 430-727 272-567 (619)
10 3sov_A LRP-6, low-density lipo 100.0 9.6E-41 3.3E-45 354.6 33.3 253 472-728 2-256 (318)
11 1ijq_A LDL receptor, low-densi 100.0 4.3E-39 1.5E-43 342.5 36.8 252 474-727 1-255 (316)
12 4a0p_A LRP6, LRP-6, low-densit 100.0 2.2E-38 7.5E-43 365.6 35.8 248 473-727 5-254 (628)
13 3s94_A LRP-6, low-density lipo 100.0 1.4E-38 4.8E-43 367.0 29.8 242 474-717 9-252 (619)
14 3p5b_L Low density lipoprotein 100.0 1.6E-35 5.4E-40 324.9 35.3 302 375-689 24-342 (400)
15 3v65_B Low-density lipoprotein 100.0 6.1E-36 2.1E-40 326.9 31.8 302 375-689 27-340 (386)
16 3v64_C Agrin; beta propeller, 100.0 6.9E-35 2.4E-39 314.2 32.9 287 389-689 1-297 (349)
17 1npe_A Nidogen, entactin; glyc 100.0 7.3E-31 2.5E-35 271.7 32.7 249 475-728 2-257 (267)
18 3sov_A LRP-6, low-density lipo 100.0 2.3E-26 8E-31 243.9 29.2 208 475-689 47-260 (318)
19 1ijq_A LDL receptor, low-densi 99.9 7.8E-25 2.7E-29 232.4 28.1 206 516-729 3-216 (316)
20 3s25_A Hypothetical 7-bladed b 99.9 1.9E-23 6.4E-28 219.1 25.3 212 480-716 85-300 (302)
21 1npe_A Nidogen, entactin; glyc 99.9 8.7E-23 3E-27 210.9 24.5 206 515-728 2-215 (267)
22 4hw6_A Hypothetical protein, I 99.8 5.1E-19 1.7E-23 195.5 30.4 227 475-706 153-431 (433)
23 3tc9_A Hypothetical hydrolase; 99.8 5E-19 1.7E-23 195.6 29.8 231 474-706 149-428 (430)
24 2fyj_A Low-density lipoprotein 99.8 7.1E-21 2.4E-25 156.8 7.7 78 51-131 2-81 (82)
25 3tc9_A Hypothetical hydrolase; 99.8 6.2E-19 2.1E-23 194.8 24.4 208 501-715 135-377 (430)
26 2fcw_B LDL receptor, low-densi 99.8 4.8E-21 1.6E-25 156.5 4.7 75 53-130 2-78 (80)
27 3hrp_A Uncharacterized protein 99.8 6.8E-18 2.3E-22 185.4 30.5 228 474-706 141-408 (409)
28 4hw6_A Hypothetical protein, I 99.8 2.7E-18 9.1E-23 189.7 23.9 208 501-715 137-380 (433)
29 2fyj_A Low-density lipoprotein 99.8 1.5E-19 5.1E-24 148.9 7.3 75 92-168 3-79 (82)
30 3kya_A Putative phosphatase; s 99.8 5.7E-17 1.9E-21 179.1 29.9 231 475-708 152-475 (496)
31 2fcw_B LDL receptor, low-densi 99.8 2.9E-20 9.9E-25 151.9 2.7 74 93-168 2-75 (80)
32 3hrp_A Uncharacterized protein 99.8 2.4E-17 8.1E-22 181.1 26.7 208 501-715 129-361 (409)
33 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-16 5.1E-21 169.3 27.7 225 501-728 22-298 (329)
34 3s25_A Hypothetical 7-bladed b 99.8 1.7E-16 5.9E-21 166.2 25.8 217 475-717 26-263 (302)
35 3kya_A Putative phosphatase; s 99.7 7E-17 2.4E-21 178.3 23.6 210 501-715 137-416 (496)
36 3fvz_A Peptidyl-glycine alpha- 99.7 1.8E-15 6.2E-20 160.9 28.3 222 484-707 70-321 (329)
37 1rwi_B Serine/threonine-protei 99.7 2.5E-16 8.7E-21 161.5 21.0 226 476-710 36-266 (270)
38 2fp8_A Strictosidine synthase; 99.7 9.6E-16 3.3E-20 162.5 22.4 210 501-718 17-278 (322)
39 1q7f_A NHL, brain tumor CG1071 99.7 4.4E-15 1.5E-19 154.0 25.6 220 501-727 28-256 (286)
40 1rwi_B Serine/threonine-protei 99.7 1.1E-15 3.9E-20 156.6 20.5 214 504-728 25-240 (270)
41 2qc5_A Streptogramin B lactona 99.7 2.7E-14 9.1E-19 148.2 30.8 243 475-728 31-278 (300)
42 3g4e_A Regucalcin; six bladed 99.7 2.6E-15 8.9E-20 157.2 23.1 208 501-717 11-238 (297)
43 1q7f_A NHL, brain tumor CG1071 99.7 3.7E-14 1.3E-18 147.0 29.5 223 476-705 42-277 (286)
44 2fp8_A Strictosidine synthase; 99.7 9.6E-15 3.3E-19 154.8 24.9 219 482-707 39-312 (322)
45 2z2n_A Virginiamycin B lyase; 99.6 9.6E-14 3.3E-18 144.0 29.8 227 475-711 26-257 (299)
46 2qc5_A Streptogramin B lactona 99.6 6.1E-14 2.1E-18 145.5 27.2 220 476-706 74-298 (300)
47 3dsm_A Uncharacterized protein 99.6 1.7E-13 6E-18 145.5 28.7 224 482-716 63-309 (328)
48 3e5z_A Putative gluconolactona 99.6 1E-13 3.4E-18 144.6 26.3 214 489-717 14-254 (296)
49 2p4o_A Hypothetical protein; p 99.6 5.5E-14 1.9E-18 147.9 23.8 212 503-728 32-261 (306)
50 2z2n_A Virginiamycin B lyase; 99.6 2.6E-13 8.9E-18 140.6 28.2 224 476-709 69-296 (299)
51 3dr2_A Exported gluconolactona 99.6 2.6E-13 8.9E-18 142.5 25.5 214 491-717 33-275 (305)
52 2p4o_A Hypothetical protein; p 99.6 6.3E-13 2.2E-17 139.7 26.7 213 476-698 44-279 (306)
53 2ism_A Putative oxidoreductase 99.6 1.8E-13 6.1E-18 146.9 21.5 211 493-710 21-299 (352)
54 3vgz_A Uncharacterized protein 99.5 3.7E-12 1.3E-16 135.3 30.3 230 482-717 68-312 (353)
55 3a9g_A Putative uncharacterize 99.5 1.5E-12 5E-17 139.8 22.4 207 494-708 20-296 (354)
56 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-12 4.4E-17 136.8 20.8 217 494-716 9-264 (314)
57 2dg1_A DRP35, lactonase; beta 99.5 1.1E-11 3.7E-16 131.2 27.6 216 494-716 36-270 (333)
58 2w2n_E LDL receptor, low-densi 99.5 1.1E-14 3.9E-19 127.0 3.3 88 377-468 19-106 (107)
59 2qe8_A Uncharacterized protein 99.5 3.5E-12 1.2E-16 136.3 21.4 215 503-728 17-297 (343)
60 3dsm_A Uncharacterized protein 99.4 2.3E-11 8E-16 129.0 26.9 216 483-711 17-256 (328)
61 3e5z_A Putative gluconolactona 99.4 6E-11 2.1E-15 123.4 29.4 218 477-711 42-289 (296)
62 2qe8_A Uncharacterized protein 99.4 7.1E-12 2.4E-16 133.9 22.3 195 501-701 65-314 (343)
63 3vgz_A Uncharacterized protein 99.4 6.8E-11 2.3E-15 125.5 29.8 213 502-717 40-271 (353)
64 3qqz_A Putative uncharacterize 99.4 7.1E-11 2.4E-15 119.6 28.2 204 503-709 27-254 (255)
65 2ghs_A AGR_C_1268P; regucalcin 99.4 2.6E-11 8.9E-16 128.6 26.1 211 495-716 40-267 (326)
66 2ism_A Putative oxidoreductase 99.4 3.1E-11 1.1E-15 129.4 23.8 214 477-698 44-335 (352)
67 3a9g_A Putative uncharacterize 99.4 8.1E-11 2.8E-15 126.2 26.7 223 476-706 41-350 (354)
68 3dr2_A Exported gluconolactona 99.4 1E-10 3.5E-15 122.5 26.6 215 476-705 58-303 (305)
69 3g4e_A Regucalcin; six bladed 99.4 1E-10 3.5E-15 122.1 26.3 210 476-698 26-263 (297)
70 2g8s_A Glucose/sorbosone dehyd 99.4 1.4E-11 4.8E-16 132.1 19.0 215 492-710 7-310 (353)
71 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1E-10 3.6E-15 122.1 25.2 216 482-707 45-298 (314)
72 3das_A Putative oxidoreductase 99.4 4.8E-11 1.6E-15 126.3 22.3 211 494-709 23-293 (347)
73 3hfq_A Uncharacterized protein 99.4 2.4E-10 8.4E-15 121.4 28.2 230 483-714 63-325 (347)
74 3u4y_A Uncharacterized protein 99.3 7.8E-10 2.7E-14 116.4 30.3 224 482-711 19-255 (331)
75 1z1y_A Ookinete surface protei 99.3 1.5E-13 5.1E-18 133.4 0.1 145 271-464 12-174 (186)
76 1z6c_A Vitamin K-dependent pro 99.3 1.1E-12 3.6E-17 110.2 5.0 82 388-471 2-86 (87)
77 2dg1_A DRP35, lactonase; beta 99.3 4.1E-10 1.4E-14 118.9 26.1 226 476-706 57-314 (333)
78 2gtl_O Extracellular hemoglobi 99.3 1.5E-14 5.3E-19 138.9 -7.5 127 119-313 41-185 (215)
79 1lmj_A Fibrillin 1; EGF, calci 99.3 1.4E-12 4.9E-17 109.2 5.3 79 388-466 2-84 (86)
80 2g8s_A Glucose/sorbosone dehyd 99.3 1.5E-10 5.2E-15 124.1 22.1 227 477-706 32-352 (353)
81 1emn_A Fibrillin; extracellula 99.3 2.8E-12 9.7E-17 106.2 6.1 73 388-463 4-78 (82)
82 2xrc_A Human complement factor 99.3 1.4E-12 4.7E-17 148.3 5.1 101 58-168 174-274 (565)
83 2p9w_A MAL S 1 allergenic prot 99.3 3.9E-10 1.3E-14 117.0 22.4 203 502-709 12-265 (334)
84 1l0q_A Surface layer protein; 99.3 4.2E-09 1.4E-13 113.5 31.4 234 476-717 3-242 (391)
85 3sre_A PON1, serum paraoxonase 99.3 2.1E-10 7.1E-15 121.9 20.4 199 499-706 45-296 (355)
86 1dx5_I Thrombomodulin; serine 99.3 5.6E-13 1.9E-17 118.8 -0.0 85 375-463 27-113 (118)
87 1ri6_A Putative isomerase YBHE 99.2 4.4E-09 1.5E-13 110.6 29.9 250 476-728 51-329 (343)
88 2iwa_A Glutamine cyclotransfer 99.2 3.1E-09 1.1E-13 108.1 26.7 195 504-708 22-237 (266)
89 3c75_H MADH, methylamine dehyd 99.2 1E-09 3.5E-14 119.8 24.6 234 476-715 86-409 (426)
90 3hfq_A Uncharacterized protein 99.2 1.4E-09 4.9E-14 115.4 25.4 220 485-707 20-270 (347)
91 2xrc_A Human complement factor 99.2 4.8E-12 1.7E-16 143.7 6.0 71 229-300 206-276 (565)
92 1ri6_A Putative isomerase YBHE 99.2 7.4E-09 2.5E-13 108.8 30.1 231 476-707 6-261 (343)
93 1l0q_A Surface layer protein; 99.2 1.3E-08 4.4E-13 109.6 32.1 233 476-716 45-283 (391)
94 3scy_A Hypothetical bacterial 99.2 1.1E-08 3.6E-13 109.4 30.2 209 501-713 98-344 (361)
95 3das_A Putative oxidoreductase 99.2 1E-08 3.5E-13 108.5 28.8 214 476-697 44-327 (347)
96 3u4y_A Uncharacterized protein 99.2 4.7E-09 1.6E-13 110.3 26.4 199 510-716 5-218 (331)
97 2gtl_O Extracellular hemoglobi 99.2 1.5E-12 5.1E-17 125.1 -0.6 106 43-168 47-170 (215)
98 2kny_A LRP-1, linker, APO-E; l 99.1 6.3E-12 2.2E-16 102.1 1.2 67 47-115 3-74 (80)
99 2bou_A EGF-like module contain 99.1 2.2E-11 7.7E-16 112.6 5.1 95 375-470 22-138 (143)
100 2ghs_A AGR_C_1268P; regucalcin 99.1 1.6E-08 5.6E-13 106.9 27.2 209 476-698 62-293 (326)
101 1ajj_A LR5, low-density lipopr 99.1 3.5E-11 1.2E-15 82.5 3.5 36 53-89 1-36 (37)
102 2kny_A LRP-1, linker, APO-E; l 99.1 9.2E-12 3.2E-16 101.2 0.6 67 87-154 2-74 (80)
103 3qqz_A Putative uncharacterize 99.1 1.5E-08 5E-13 102.5 24.0 179 483-665 49-253 (255)
104 1pby_B Quinohemoprotein amine 99.1 5.4E-08 1.8E-12 101.9 29.5 225 482-718 10-320 (337)
105 2m0p_A Low-density lipoprotein 99.1 3.1E-11 1.1E-15 88.3 2.8 39 51-90 4-42 (52)
106 3a7q_B Low-density lipoprotein 99.1 5.2E-11 1.8E-15 85.0 3.3 40 50-90 4-43 (44)
107 3scy_A Hypothetical bacterial 99.1 9E-08 3.1E-12 102.1 29.6 222 486-710 32-295 (361)
108 2jm4_A Relaxin receptor 1; LDL 99.1 8.9E-11 3.1E-15 83.3 4.0 39 50-89 3-42 (43)
109 1d2l_A Lipoprotein receptor re 99.1 7.4E-11 2.5E-15 84.3 3.4 38 51-89 3-40 (45)
110 2mad_H Methylamine dehydrogena 99.0 1.4E-07 4.7E-12 101.7 30.5 231 484-728 48-368 (373)
111 1cr8_A Protein (LOW density li 99.0 1.3E-10 4.4E-15 82.1 4.0 38 52-90 2-40 (42)
112 2iwa_A Glutamine cyclotransfer 99.0 3.3E-08 1.1E-12 100.5 23.5 182 476-666 33-238 (266)
113 1yo8_A Thrombospondin-2; EGF, 99.0 4.7E-10 1.6E-14 126.3 10.5 87 375-461 29-140 (634)
114 1nir_A Nitrite reductase; hemo 99.0 2.1E-07 7.1E-12 105.6 32.5 239 474-717 148-418 (543)
115 3sjl_D Methylamine dehydrogena 99.0 1.1E-07 3.9E-12 101.8 27.7 243 476-727 46-379 (386)
116 1cru_A Protein (soluble quinop 99.0 9.3E-09 3.2E-13 113.7 19.7 162 492-656 16-249 (454)
117 2vj3_A Neurogenic locus notch 99.0 5.1E-10 1.7E-14 102.3 7.9 82 375-461 31-115 (135)
118 2oiz_A Aromatic amine dehydrog 99.0 1.9E-07 6.3E-12 100.3 29.2 236 483-727 31-353 (361)
119 3bws_A Protein LP49; two-domai 99.0 2.2E-07 7.7E-12 101.3 30.2 236 475-717 134-399 (433)
120 2i1p_A Low-density lipoprotein 99.0 2E-10 6.8E-15 83.7 3.3 39 52-91 5-44 (48)
121 1k7b_A Subgroup A ROUS sarcoma 99.0 2E-10 7E-15 83.3 3.2 38 51-89 4-46 (47)
122 1mda_H Methylamine dehydrogena 99.0 4.2E-08 1.4E-12 105.1 22.6 231 484-729 47-364 (368)
123 1jmx_B Amine dehydrogenase; ox 99.0 1.3E-07 4.5E-12 99.5 26.0 222 482-716 20-333 (349)
124 1uzk_A Fibrillin-1; glycoprote 99.0 8.5E-11 2.9E-15 111.1 0.9 62 406-468 96-161 (162)
125 2p9w_A MAL S 1 allergenic prot 99.0 4.4E-08 1.5E-12 101.7 21.3 165 540-707 6-214 (334)
126 1jof_A Carboxy-CIS,CIS-muconat 99.0 2.7E-07 9.2E-12 98.9 28.6 210 501-713 38-297 (365)
127 2knx_A Prolow-density lipoprot 99.0 3.4E-10 1.2E-14 82.8 3.8 39 51-90 4-43 (50)
128 3dpr_E LDL-receptor class A 3; 99.0 2.6E-10 9E-15 79.1 2.9 36 54-90 1-38 (39)
129 1x7a_L Coagulation factor IX, 99.0 4E-10 1.4E-14 104.1 5.0 82 386-472 44-128 (146)
130 1j8e_A Low-density lipoprotein 99.0 2.5E-10 8.5E-15 81.5 2.8 37 52-89 3-39 (44)
131 3nol_A Glutamine cyclotransfer 99.0 9.2E-08 3.1E-12 96.2 22.5 179 476-664 54-255 (262)
132 3sre_A PON1, serum paraoxonase 98.9 2.5E-07 8.5E-12 98.2 26.8 162 482-652 82-284 (355)
133 4fbr_A Lectin, myxobacterial h 98.9 9.5E-13 3.3E-17 131.5 -14.0 209 185-461 37-265 (267)
134 3mbr_X Glutamine cyclotransfer 98.9 2.6E-07 9E-12 92.1 25.1 181 475-665 31-235 (243)
135 1jof_A Carboxy-CIS,CIS-muconat 98.9 1.6E-07 5.4E-12 100.7 25.5 245 477-726 54-357 (365)
136 1d2l_A Lipoprotein receptor re 98.9 4.7E-10 1.6E-14 80.1 3.7 36 133-168 4-39 (45)
137 3dpr_E LDL-receptor class A 3; 98.9 5.6E-10 1.9E-14 77.4 3.9 38 94-131 1-38 (39)
138 3nok_A Glutaminyl cyclase; bet 98.9 4.4E-07 1.5E-11 91.2 26.1 188 505-705 57-263 (268)
139 4d90_A EGF-like repeat and dis 98.9 1.3E-09 4.6E-14 100.6 7.1 99 345-462 21-130 (143)
140 1ajj_A LR5, low-density lipopr 98.9 5.8E-10 2E-14 76.4 3.4 35 265-299 2-36 (37)
141 1jrf_A TVA LDL-A module, subgr 98.9 3.8E-10 1.3E-14 82.0 2.1 39 51-90 2-45 (47)
142 1nir_A Nitrite reductase; hemo 98.9 6.3E-07 2.1E-11 101.6 29.5 221 504-726 281-531 (543)
143 3nol_A Glutamine cyclotransfer 98.9 8.8E-07 3E-11 89.0 27.0 189 505-705 45-253 (262)
144 1cr8_A Protein (LOW density li 98.9 1.2E-09 4E-14 77.1 4.1 39 92-131 2-40 (42)
145 3mbr_X Glutamine cyclotransfer 98.9 1.1E-06 3.7E-11 87.6 27.2 190 504-705 22-232 (243)
146 1uzk_A Fibrillin-1; glycoprote 98.9 1.9E-10 6.6E-15 108.7 -0.2 43 386-428 118-162 (162)
147 1aut_L Activated protein C; se 98.9 1.6E-09 5.5E-14 95.7 5.7 80 388-472 5-96 (114)
148 3bws_A Protein LP49; two-domai 98.9 9.8E-07 3.4E-11 96.2 28.7 216 482-705 190-429 (433)
149 1cru_A Protein (soluble quinop 98.8 6.4E-08 2.2E-12 107.0 18.8 159 535-699 16-249 (454)
150 3nok_A Glutaminyl cyclase; bet 98.8 4.6E-07 1.6E-11 91.1 22.9 179 475-663 65-264 (268)
151 2m0p_A Low-density lipoprotein 98.8 4.6E-10 1.6E-14 82.1 0.8 37 132-168 4-40 (52)
152 1kli_L Factor VIIA; extrinsic 98.8 1.1E-09 3.7E-14 86.5 2.7 47 388-434 4-51 (69)
153 1qks_A Cytochrome CD1 nitrite 98.8 2.3E-06 8E-11 97.1 30.9 229 476-708 168-421 (567)
154 2w86_A Fibrillin-1, fibrillin1 98.8 2E-09 6.8E-14 99.9 4.5 57 410-468 88-146 (147)
155 3a7q_B Low-density lipoprotein 98.8 1.7E-09 5.9E-14 77.1 3.1 36 133-168 6-41 (44)
156 3no2_A Uncharacterized protein 98.8 3.4E-07 1.2E-11 94.3 21.8 194 515-717 5-204 (276)
157 2jm4_A Relaxin receptor 1; LDL 98.8 2.2E-09 7.6E-14 76.1 3.6 36 133-168 5-41 (43)
158 2vh0_B Activated factor XA lig 98.8 1.4E-09 4.9E-14 98.9 3.2 80 388-472 41-123 (134)
159 1nfu_B Coagulation factor XA, 98.8 1.5E-09 5E-14 104.5 3.2 80 387-473 39-124 (195)
160 2jkh_L Factor X light chain; p 98.8 1.6E-09 5.6E-14 81.7 2.5 45 390-434 2-46 (55)
161 3no2_A Uncharacterized protein 98.8 1.8E-06 6.2E-11 88.8 26.0 226 482-718 14-262 (276)
162 2i1p_A Low-density lipoprotein 98.8 1.6E-09 5.6E-14 78.8 1.7 40 261-300 3-43 (48)
163 1qks_A Cytochrome CD1 nitrite 98.8 2.9E-06 9.8E-11 96.4 29.3 251 476-727 210-556 (567)
164 1k7b_A Subgroup A ROUS sarcoma 98.8 3.2E-09 1.1E-13 77.0 2.8 36 133-168 5-45 (47)
165 2wph_E Coagulation factor IXA 98.7 4.5E-09 1.5E-13 80.3 3.3 53 392-448 2-55 (59)
166 3q6k_A 43.2 kDa salivary prote 98.7 2.9E-06 1E-10 90.3 26.2 195 501-698 85-344 (381)
167 1j8e_A Low-density lipoprotein 98.7 1.7E-09 5.9E-14 77.1 0.7 36 133-168 3-38 (44)
168 2knx_A Prolow-density lipoprot 98.7 4.9E-09 1.7E-13 76.7 3.0 38 92-130 5-42 (50)
169 2ece_A 462AA long hypothetical 98.7 2.6E-06 8.9E-11 92.1 25.5 230 476-709 97-428 (462)
170 2c4f_L Coagulation factor VII 98.7 1.2E-08 4E-13 93.9 5.7 78 388-472 46-131 (142)
171 1kig_L Factor XA; glycoprotein 98.7 6.9E-09 2.4E-13 76.8 3.2 43 392-434 1-43 (51)
172 2bou_A EGF-like module contain 98.7 3.6E-09 1.2E-13 97.6 2.0 49 386-434 92-143 (143)
173 2gtl_N Extracellular hemoglobi 98.7 1E-08 3.4E-13 97.4 4.9 57 51-110 50-113 (220)
174 2hqs_A Protein TOLB; TOLB, PAL 98.7 5.1E-06 1.7E-10 90.7 27.3 225 483-716 159-394 (415)
175 2wg3_C Hedgehog-interacting pr 98.7 8.9E-07 3E-11 97.7 21.1 210 494-707 5-311 (463)
176 2vj3_A Neurogenic locus notch 98.7 2.1E-08 7.3E-13 91.4 5.9 115 264-436 7-127 (135)
177 2ojh_A Uncharacterized protein 98.6 9.9E-06 3.4E-10 82.2 26.1 225 483-715 22-265 (297)
178 2bz6_L Blood coagulation facto 98.6 1E-08 3.4E-13 76.6 2.3 43 392-434 2-45 (53)
179 3h5c_B Vitamin K-dependent pro 98.6 3.7E-08 1.3E-12 103.8 7.5 80 388-472 4-86 (317)
180 1pby_B Quinohemoprotein amine 98.6 2.4E-06 8.2E-11 89.1 21.1 152 517-672 3-170 (337)
181 1jrf_A TVA LDL-A module, subgr 98.6 8.3E-09 2.8E-13 74.8 1.3 36 133-168 3-43 (47)
182 3c75_H MADH, methylamine dehyd 98.6 1.9E-06 6.7E-11 93.8 20.1 107 514-623 84-210 (426)
183 1x7a_L Coagulation factor IX, 98.6 1.9E-08 6.6E-13 92.8 3.6 57 375-433 72-130 (146)
184 2ygq_A WIF-1, WNT inhibitory f 98.6 5.8E-08 2E-12 101.9 7.7 107 183-318 150-258 (324)
185 1jmx_B Amine dehydrogenase; ox 98.6 8.6E-06 3E-10 85.4 24.3 155 507-667 4-177 (349)
186 1z1y_A Ookinete surface protei 98.6 1.1E-08 3.8E-13 98.8 1.4 92 375-470 28-136 (186)
187 1yo8_A Thrombospondin-2; EGF, 98.5 8.7E-08 3E-12 108.0 8.0 129 272-440 11-161 (634)
188 2gtl_N Extracellular hemoglobi 98.5 2.4E-08 8.4E-13 94.8 2.8 60 90-149 49-113 (220)
189 3amr_A 3-phytase; beta-propell 98.5 1.9E-05 6.6E-10 82.6 24.9 187 475-666 40-264 (355)
190 1fwx_A Nitrous oxide reductase 98.5 2.8E-06 9.6E-11 94.9 19.4 193 514-708 101-361 (595)
191 1lmj_A Fibrillin 1; EGF, calci 98.5 2.5E-08 8.6E-13 83.1 2.3 54 375-428 28-86 (86)
192 3amr_A 3-phytase; beta-propell 98.5 3.6E-05 1.2E-09 80.5 26.6 145 560-707 88-262 (355)
193 2gtl_M Hemoglobin linker chain 98.5 4.6E-08 1.6E-12 94.0 3.4 66 50-129 50-120 (217)
194 3azo_A Aminopeptidase; POP fam 98.5 1.8E-05 6.1E-10 91.6 26.1 231 477-712 94-373 (662)
195 1fwx_A Nitrous oxide reductase 98.5 4.5E-06 1.5E-10 93.3 19.5 234 476-717 103-439 (595)
196 1dx5_I Thrombomodulin; serine 98.5 6E-08 2E-12 86.1 3.1 74 388-471 3-80 (118)
197 2wg3_C Hedgehog-interacting pr 98.4 8.7E-06 3E-10 89.8 20.8 200 503-705 69-370 (463)
198 2mad_H Methylamine dehydrogena 98.4 0.0001 3.5E-09 79.1 28.7 197 483-688 97-371 (373)
199 2w2n_E LDL receptor, low-densi 98.4 6.5E-08 2.2E-12 84.0 1.6 53 375-428 53-107 (107)
200 2vj2_A Jagged-1; signalling, p 98.4 6.7E-08 2.3E-12 91.6 1.6 50 408-461 112-165 (169)
201 1z6c_A Vitamin K-dependent pro 98.4 1.6E-07 5.4E-12 78.4 3.7 55 375-431 28-87 (87)
202 1nfu_B Coagulation factor XA, 98.4 8.2E-08 2.8E-12 92.3 2.2 55 375-431 66-123 (195)
203 1tpg_A T-plasminogen activator 98.4 2.7E-07 9.3E-12 77.6 5.0 72 375-461 5-82 (91)
204 2gtl_M Hemoglobin linker chain 98.4 7.7E-08 2.6E-12 92.5 1.7 68 90-168 50-120 (217)
205 2vh0_B Activated factor XA lig 98.4 9.2E-08 3.1E-12 86.9 2.2 56 375-432 66-124 (134)
206 2ece_A 462AA long hypothetical 98.4 2.1E-05 7.1E-10 85.1 20.4 202 512-715 93-359 (462)
207 1mda_H Methylamine dehydrogena 98.4 3.3E-05 1.1E-09 82.6 21.9 195 514-717 31-312 (368)
208 1aut_L Activated protein C; se 98.3 1.8E-07 6.1E-12 82.5 3.3 44 389-432 54-97 (114)
209 2oiz_A Aromatic amine dehydrog 98.3 5.6E-05 1.9E-09 80.7 23.7 201 483-687 81-356 (361)
210 2w86_A Fibrillin-1, fibrillin1 98.3 6.6E-08 2.2E-12 89.5 0.3 54 375-428 91-147 (147)
211 2ojh_A Uncharacterized protein 98.3 1.2E-05 4.2E-10 81.6 17.4 192 476-672 55-265 (297)
212 4d90_A EGF-like repeat and dis 98.3 4.6E-07 1.6E-11 83.3 5.4 50 375-428 83-132 (143)
213 2vj2_A Jagged-1; signalling, p 98.3 3.3E-07 1.1E-11 86.9 4.1 148 199-428 15-168 (169)
214 3pe7_A Oligogalacturonate lyas 98.3 6.5E-05 2.2E-09 80.2 22.8 226 484-712 61-333 (388)
215 4fbr_A Lectin, myxobacterial h 98.3 2.1E-09 7.3E-14 107.4 -11.6 175 270-460 38-234 (267)
216 2ygq_A WIF-1, WNT inhibitory f 98.3 6.1E-07 2.1E-11 94.1 6.3 152 61-263 154-308 (324)
217 2hqs_A Protein TOLB; TOLB, PAL 98.3 5.8E-05 2E-09 82.2 22.4 184 484-672 204-394 (415)
218 1emn_A Fibrillin; extracellula 98.3 3.6E-07 1.2E-11 75.2 3.4 51 375-427 29-81 (82)
219 3q6k_A 43.2 kDa salivary prote 98.2 9.2E-05 3.2E-09 78.7 22.0 151 504-656 153-345 (381)
220 2c4f_L Coagulation factor VII 98.2 3.1E-07 1.1E-11 84.3 2.3 41 392-432 91-132 (142)
221 1apq_A Complement protease C1R 98.2 6E-07 2.1E-11 67.1 3.4 42 388-429 3-52 (53)
222 2z3z_A Dipeptidyl aminopeptida 98.2 8.8E-05 3E-09 86.4 23.0 229 476-710 134-437 (706)
223 3sjl_D Methylamine dehydrogena 98.2 0.00028 9.7E-09 75.4 24.8 206 476-689 150-384 (386)
224 3h5c_B Vitamin K-dependent pro 98.1 3.4E-06 1.2E-10 88.6 8.1 60 375-434 29-89 (317)
225 2z3z_A Dipeptidyl aminopeptida 98.1 0.0001 3.5E-09 85.9 20.8 229 475-710 93-393 (706)
226 2aq5_A Coronin-1A; WD40 repeat 98.1 0.0014 4.8E-08 70.4 28.4 211 501-715 80-307 (402)
227 3c5m_A Oligogalacturonate lyas 98.1 8.5E-05 2.9E-09 79.3 18.2 224 484-714 61-335 (396)
228 2ecf_A Dipeptidyl peptidase IV 98.1 0.00016 5.5E-09 84.7 22.1 222 476-706 122-413 (741)
229 3azo_A Aminopeptidase; POP fam 98.1 0.00011 3.7E-09 85.0 20.3 197 512-710 88-327 (662)
230 4aez_A CDC20, WD repeat-contai 98.1 0.0042 1.4E-07 66.7 31.5 229 482-715 155-387 (401)
231 3pe7_A Oligogalacturonate lyas 98.1 0.00069 2.3E-08 72.1 25.0 202 508-713 41-278 (388)
232 3hxj_A Pyrrolo-quinoline quino 98.1 0.00058 2E-08 70.9 23.7 219 476-716 72-291 (330)
233 1gxr_A ESG1, transducin-like e 98.1 0.0053 1.8E-07 63.2 30.9 230 476-714 65-302 (337)
234 3fcs_B Integrin beta-3; beta p 98.0 9.6E-06 3.3E-10 92.8 10.1 103 186-300 440-559 (690)
235 4aez_A CDC20, WD repeat-contai 98.0 0.0067 2.3E-07 65.0 32.1 228 476-713 106-341 (401)
236 1apq_A Complement protease C1R 98.0 4.9E-06 1.7E-10 62.0 3.9 42 428-470 2-52 (53)
237 2xyi_A Probable histone-bindin 98.0 0.0009 3.1E-08 72.9 23.7 207 498-705 177-407 (430)
238 2ecf_A Dipeptidyl peptidase IV 98.0 0.00056 1.9E-08 80.0 23.3 208 503-716 37-329 (741)
239 1kli_L Factor VIIA; extrinsic 98.0 5.2E-06 1.8E-10 65.3 3.9 46 427-473 2-49 (69)
240 3ojy_B Complement component C8 97.9 6E-06 2.1E-10 92.3 5.6 76 66-149 33-115 (537)
241 2xdw_A Prolyl endopeptidase; a 97.9 0.0035 1.2E-07 73.1 29.1 228 484-716 99-376 (710)
242 3ojy_A Complement component C8 97.9 8.3E-06 2.8E-10 91.3 5.5 43 46-90 58-101 (554)
243 2vdu_B TRNA (guanine-N(7)-)-me 97.9 0.003 1E-07 69.0 26.0 198 504-706 104-337 (450)
244 2jkh_L Factor X light chain; p 97.9 8E-06 2.7E-10 61.3 3.5 43 431-474 2-45 (55)
245 3ojy_B Complement component C8 97.8 8.7E-06 3E-10 91.0 5.0 61 117-185 42-109 (537)
246 2pm9_A Protein WEB1, protein t 97.8 0.001 3.5E-08 71.3 21.4 231 483-716 45-302 (416)
247 3c5m_A Oligogalacturonate lyas 97.8 0.00089 3E-08 71.2 20.6 183 524-711 167-387 (396)
248 4ery_A WD repeat-containing pr 97.8 0.028 9.7E-07 57.5 31.4 228 482-715 44-275 (312)
249 3ow8_A WD repeat-containing pr 97.8 0.026 9E-07 58.5 31.1 206 502-715 80-286 (321)
250 3ei3_B DNA damage-binding prot 97.8 0.0063 2.1E-07 64.5 26.8 210 501-716 72-290 (383)
251 1r5m_A SIR4-interacting protei 97.8 0.0035 1.2E-07 67.0 24.9 219 482-710 129-363 (425)
252 1tpg_A T-plasminogen activator 97.8 1.2E-05 4.3E-10 67.3 4.1 41 388-432 47-90 (91)
253 3ojy_A Complement component C8 97.8 1.2E-05 4.1E-10 90.0 5.1 92 53-153 22-121 (554)
254 3zwl_B Eukaryotic translation 97.8 0.021 7.2E-07 59.4 29.9 219 482-706 95-344 (369)
255 3fcs_B Integrin beta-3; beta p 97.8 4.1E-05 1.4E-09 87.6 9.1 149 117-304 458-631 (690)
256 2ymu_A WD-40 repeat protein; u 97.8 0.015 5.2E-07 65.2 30.6 222 482-716 324-546 (577)
257 1gxr_A ESG1, transducin-like e 97.8 0.0059 2E-07 62.8 25.0 200 501-710 50-257 (337)
258 2vdu_B TRNA (guanine-N(7)-)-me 97.8 0.012 3.9E-07 64.3 28.4 222 483-710 125-395 (450)
259 3o4h_A Acylamino-acid-releasin 97.8 0.00054 1.9E-08 77.8 18.2 174 490-673 51-234 (582)
260 2gop_A Trilobed protease; beta 97.8 0.0048 1.6E-07 64.4 24.3 207 482-714 42-297 (347)
261 2pm9_A Protein WEB1, protein t 97.8 0.0017 5.8E-08 69.5 21.1 226 482-710 88-339 (416)
262 4gqb_B Methylosome protein 50; 97.7 0.011 3.9E-07 62.1 26.7 197 502-704 127-327 (344)
263 1sq9_A Antiviral protein SKI8; 97.7 0.014 4.8E-07 61.9 27.6 202 503-709 122-396 (397)
264 2xyi_A Probable histone-bindin 97.7 0.0037 1.3E-07 67.9 23.0 205 500-708 126-353 (430)
265 3hxj_A Pyrrolo-quinoline quino 97.7 0.0095 3.2E-07 61.5 24.8 208 476-702 109-318 (330)
266 2ymu_A WD-40 repeat protein; u 97.7 0.036 1.2E-06 62.1 31.3 222 482-716 283-505 (577)
267 4a5s_A Dipeptidyl peptidase 4 97.7 0.0017 5.9E-08 76.1 20.8 224 483-710 92-402 (740)
268 3o4h_A Acylamino-acid-releasin 97.7 0.0027 9.2E-08 72.0 21.8 195 484-694 91-298 (582)
269 1k8k_C P40, ARP2/3 complex 41 97.6 0.035 1.2E-06 57.9 29.1 219 482-708 29-274 (372)
270 3ow8_A WD repeat-containing pr 97.6 0.036 1.2E-06 57.5 28.5 214 482-703 101-316 (321)
271 2aq5_A Coronin-1A; WD40 repeat 97.6 0.01 3.6E-07 63.4 25.1 203 483-688 104-323 (402)
272 3zwl_B Eukaryotic translation 97.6 0.039 1.3E-06 57.3 29.0 209 501-716 31-257 (369)
273 1got_B GT-beta; complex (GTP-b 97.6 0.078 2.7E-06 55.2 31.1 228 483-716 77-309 (340)
274 4ery_A WD repeat-containing pr 97.6 0.058 2E-06 55.1 29.6 207 502-716 23-231 (312)
275 3jrp_A Fusion protein of prote 97.6 0.028 9.4E-07 58.8 27.1 211 501-713 54-292 (379)
276 4e54_B DNA damage-binding prot 97.6 0.004 1.4E-07 67.7 21.1 211 502-715 119-334 (435)
277 1vyh_C Platelet-activating fac 97.6 0.045 1.5E-06 58.9 28.9 228 482-716 129-377 (410)
278 1sq9_A Antiviral protein SKI8; 97.6 0.021 7.3E-07 60.4 26.0 230 482-716 35-330 (397)
279 1k32_A Tricorn protease; prote 97.5 0.0064 2.2E-07 74.3 24.5 217 482-710 357-639 (1045)
280 3mkq_A Coatomer beta'-subunit; 97.5 0.021 7.3E-07 67.0 28.4 210 501-716 12-225 (814)
281 3vl1_A 26S proteasome regulato 97.5 0.032 1.1E-06 59.6 27.5 220 482-708 118-365 (420)
282 1kig_L Factor XA; glycoprotein 97.5 3.4E-05 1.2E-09 56.7 2.6 37 436-473 5-41 (51)
283 4g56_B MGC81050 protein; prote 97.5 0.0068 2.3E-07 64.1 21.7 208 502-715 139-351 (357)
284 1k32_A Tricorn protease; prote 97.5 0.0031 1.1E-07 77.0 21.4 208 477-696 259-491 (1045)
285 3ei3_B DNA damage-binding prot 97.5 0.021 7E-07 60.4 25.3 180 482-666 95-283 (383)
286 2ynn_A Coatomer subunit beta'; 97.5 0.05 1.7E-06 55.6 27.5 160 502-666 13-173 (304)
287 1vyh_C Platelet-activating fac 97.5 0.03 1E-06 60.3 26.8 164 501-670 107-270 (410)
288 1xfd_A DIP, dipeptidyl aminope 97.5 0.0043 1.5E-07 72.1 21.4 191 476-666 127-396 (723)
289 1yfq_A Cell cycle arrest prote 97.5 0.0096 3.3E-07 61.6 22.0 224 482-716 32-290 (342)
290 1pgu_A Actin interacting prote 97.5 0.027 9.1E-07 63.5 27.4 236 476-716 32-291 (615)
291 3mkq_A Coatomer beta'-subunit; 97.5 0.049 1.7E-06 63.9 30.6 227 483-715 35-266 (814)
292 1xfd_A DIP, dipeptidyl aminope 97.5 0.0019 6.4E-08 75.2 18.1 219 483-707 91-394 (723)
293 3jrp_A Fusion protein of prote 97.4 0.036 1.2E-06 57.9 25.8 206 502-710 11-242 (379)
294 3k26_A Polycomb protein EED; W 97.4 0.02 6.7E-07 59.6 23.5 116 503-621 70-191 (366)
295 1k8k_C P40, ARP2/3 complex 41 97.4 0.028 9.6E-07 58.7 24.5 209 503-716 9-241 (372)
296 2xdw_A Prolyl endopeptidase; a 97.4 0.024 8.1E-07 66.0 26.0 221 484-710 152-416 (710)
297 2bz6_L Blood coagulation facto 97.4 8.9E-05 3.1E-09 55.0 3.0 37 436-473 6-43 (53)
298 1r5m_A SIR4-interacting protei 97.4 0.049 1.7E-06 57.8 26.0 204 503-716 109-327 (425)
299 3f1s_B Vitamin K-dependent pro 97.4 8.9E-05 3E-09 76.3 3.9 47 388-434 1-48 (283)
300 2wph_E Coagulation factor IXA 97.4 0.00011 3.9E-09 55.7 3.4 37 436-473 6-43 (59)
301 2ynn_A Coatomer subunit beta'; 97.3 0.18 6E-06 51.5 30.1 228 483-716 35-267 (304)
302 1yr2_A Prolyl oligopeptidase; 97.3 0.0084 2.9E-07 70.2 21.0 183 483-671 189-401 (741)
303 2pbi_B Guanine nucleotide-bind 97.3 0.15 5.3E-06 53.3 29.1 211 501-716 105-323 (354)
304 4a11_B DNA excision repair pro 97.3 0.033 1.1E-06 58.8 24.1 210 501-713 42-281 (408)
305 1yr2_A Prolyl oligopeptidase; 97.3 0.087 3E-06 61.5 29.7 224 484-715 134-401 (741)
306 3vl1_A 26S proteasome regulato 97.3 0.047 1.6E-06 58.3 25.4 223 482-711 77-325 (420)
307 2gop_A Trilobed protease; beta 97.3 0.01 3.5E-07 61.8 19.6 164 524-705 42-250 (347)
308 3f3f_A Nucleoporin SEH1; struc 97.3 0.093 3.2E-06 53.5 26.8 163 501-665 56-249 (351)
309 3odt_A Protein DOA1; ubiquitin 97.3 0.08 2.7E-06 53.5 26.0 221 483-716 39-263 (313)
310 1erj_A Transcriptional repress 97.3 0.22 7.5E-06 52.9 30.1 204 505-716 126-349 (393)
311 1pgu_A Actin interacting prote 97.3 0.079 2.7E-06 59.6 27.5 207 501-715 115-335 (615)
312 2bkl_A Prolyl endopeptidase; m 97.3 0.068 2.3E-06 61.9 27.5 224 484-715 95-357 (695)
313 3iuj_A Prolyl endopeptidase; h 97.2 0.01 3.5E-07 69.0 20.1 181 483-671 155-365 (693)
314 2kl7_A Fibulin-4; secreted, ca 97.2 0.00018 6.1E-09 56.9 3.4 61 388-462 2-65 (71)
315 4gqb_B Methylosome protein 50; 97.2 0.073 2.5E-06 55.8 24.6 160 503-666 83-247 (344)
316 2gy5_A Angiopoietin-1 receptor 97.2 0.00039 1.3E-08 75.4 6.5 117 159-300 188-319 (423)
317 3i2n_A WD repeat-containing pr 97.2 0.067 2.3E-06 55.3 23.6 179 482-665 89-291 (357)
318 4a9v_A PHOX; hydrolase, beta-p 97.1 0.0027 9.3E-08 70.2 12.9 109 545-654 382-551 (592)
319 3i2n_A WD repeat-containing pr 97.1 0.024 8.1E-07 58.8 20.0 202 502-709 18-244 (357)
320 3odt_A Protein DOA1; ubiquitin 97.1 0.22 7.6E-06 50.1 26.9 199 501-714 103-302 (313)
321 1szb_A Mannose binding lectin- 97.1 0.00019 6.5E-09 67.8 3.1 43 388-430 123-168 (170)
322 4g56_B MGC81050 protein; prote 97.1 0.021 7.1E-07 60.3 19.0 181 482-664 160-342 (357)
323 2gy5_A Angiopoietin-1 receptor 97.1 0.00039 1.3E-08 75.4 5.3 81 200-300 184-277 (423)
324 3k6s_B Integrin beta-2; cell r 97.1 0.00037 1.3E-08 79.5 5.1 127 61-216 436-592 (687)
325 3f3f_A Nucleoporin SEH1; struc 97.1 0.14 4.9E-06 52.1 24.8 204 502-709 11-250 (351)
326 3v7d_B Cell division control p 97.0 0.51 1.7E-05 50.9 32.3 221 482-713 182-426 (464)
327 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.5 1.7E-05 50.8 32.2 218 482-716 138-356 (445)
328 4a11_B DNA excision repair pro 97.0 0.12 4E-06 54.5 24.5 227 482-714 121-371 (408)
329 3frx_A Guanine nucleotide-bind 97.0 0.31 1.1E-05 50.0 27.1 207 502-714 17-233 (319)
330 3dw8_B Serine/threonine-protei 97.0 0.14 4.8E-06 54.9 25.1 163 546-714 177-379 (447)
331 3k26_A Polycomb protein EED; W 97.0 0.047 1.6E-06 56.7 20.4 162 502-665 18-192 (366)
332 1tl2_A L10, protein (tachylect 97.0 0.067 2.3E-06 51.9 19.2 178 514-708 4-210 (236)
333 4aqs_A Laminin subunit beta-1; 97.0 0.0019 6.5E-08 72.5 9.9 29 199-227 277-305 (525)
334 4a5s_A Dipeptidyl peptidase 4 96.9 0.051 1.7E-06 63.5 22.3 80 592-673 321-408 (740)
335 2ad6_A Methanol dehydrogenase 96.9 0.41 1.4E-05 53.9 28.7 79 637-718 389-504 (571)
336 3k6s_B Integrin beta-2; cell r 96.9 0.00091 3.1E-08 76.3 6.5 109 187-319 483-608 (687)
337 1nr0_A Actin interacting prote 96.9 0.41 1.4E-05 54.3 28.9 235 476-715 32-277 (611)
338 3v7d_B Cell division control p 96.9 0.67 2.3E-05 50.0 31.0 221 482-713 141-386 (464)
339 3gre_A Serine/threonine-protei 96.8 0.27 9.4E-06 52.6 25.5 211 501-717 110-368 (437)
340 3iuj_A Prolyl endopeptidase; h 96.8 0.16 5.5E-06 58.8 24.8 184 485-673 210-413 (693)
341 3iz6_a 40S ribosomal protein R 96.8 0.39 1.3E-05 50.7 26.0 228 484-715 89-336 (380)
342 3q7m_A Lipoprotein YFGL, BAMB; 96.8 0.63 2.1E-05 48.8 27.5 187 514-716 143-345 (376)
343 3v9f_A Two-component system se 96.8 0.095 3.2E-06 61.6 23.0 220 476-710 375-613 (781)
344 4aow_A Guanine nucleotide-bind 96.8 0.59 2E-05 47.6 27.8 208 502-714 38-252 (340)
345 1p22_A F-BOX/WD-repeat protein 96.8 0.75 2.6E-05 49.3 28.5 213 481-710 151-367 (435)
346 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.82 2.8E-05 49.1 30.3 219 482-715 178-398 (445)
347 1kb0_A Quinohemoprotein alcoho 96.7 0.47 1.6E-05 54.7 28.0 60 656-717 457-516 (677)
348 3dm0_A Maltose-binding peripla 96.7 0.32 1.1E-05 56.0 26.9 208 500-712 380-596 (694)
349 2bkl_A Prolyl endopeptidase; m 96.7 0.05 1.7E-06 63.1 20.0 183 483-671 147-357 (695)
350 3t5o_A Complement component C6 96.7 0.00069 2.4E-08 80.9 4.1 34 58-91 121-154 (913)
351 1edm_B Factor IX; epidermal gr 96.7 0.00087 3E-08 46.0 2.9 37 388-428 2-38 (39)
352 1got_B GT-beta; complex (GTP-b 96.7 0.51 1.7E-05 48.8 25.9 177 502-687 143-321 (340)
353 1yfq_A Cell cycle arrest prote 96.7 0.091 3.1E-06 54.0 19.6 177 482-668 78-285 (342)
354 1szb_A Mannose binding lectin- 96.7 0.00085 2.9E-08 63.2 3.3 52 416-471 113-168 (170)
355 3frx_A Guanine nucleotide-bind 96.6 0.74 2.5E-05 47.1 29.6 217 482-706 86-315 (319)
356 2k2s_B Micronemal protein 6; m 96.6 0.00035 1.2E-08 53.2 0.4 44 388-434 10-55 (61)
357 3q7m_A Lipoprotein YFGL, BAMB; 96.6 0.85 2.9E-05 47.8 32.1 186 514-716 103-304 (376)
358 4a9v_A PHOX; hydrolase, beta-p 96.6 0.012 4.2E-07 65.1 12.6 106 588-695 382-549 (592)
359 1z68_A Fibroblast activation p 96.6 0.0061 2.1E-07 70.9 11.0 217 483-709 90-394 (719)
360 3sfz_A APAF-1, apoptotic pepti 96.6 0.87 3E-05 56.2 31.0 227 482-715 636-878 (1249)
361 1erj_A Transcriptional repress 96.6 0.97 3.3E-05 47.8 30.9 214 482-703 144-384 (393)
362 3t5o_A Complement component C6 96.6 0.0012 4E-08 78.9 4.6 31 138-168 121-151 (913)
363 4a2l_A BT_4663, two-component 96.6 0.3 1E-05 57.4 25.4 214 483-710 330-573 (795)
364 2pm7_B Protein transport prote 96.5 0.83 2.8E-05 46.1 28.0 183 482-665 30-238 (297)
365 3iz6_a 40S ribosomal protein R 96.5 0.92 3.2E-05 47.7 26.6 200 504-706 159-373 (380)
366 3mmy_A MRNA export factor; mRN 96.5 0.91 3.1E-05 46.5 26.4 160 501-668 38-202 (368)
367 3jro_A Fusion protein of prote 96.5 0.12 4.3E-06 60.3 21.2 207 501-708 52-285 (753)
368 2xe4_A Oligopeptidase B; hydro 96.4 0.42 1.4E-05 55.9 25.1 197 504-706 175-398 (751)
369 3jro_A Fusion protein of prote 96.4 0.22 7.5E-06 58.2 22.7 205 503-710 10-240 (753)
370 4a2l_A BT_4663, two-component 96.4 0.54 1.8E-05 55.2 26.1 223 476-710 275-528 (795)
371 2oit_A Nucleoporin 214KDA; NH2 96.4 0.25 8.7E-06 53.5 21.6 122 503-626 93-227 (434)
372 3dm0_A Maltose-binding peripla 96.4 0.55 1.9E-05 54.1 25.8 208 500-715 428-639 (694)
373 3dwl_C Actin-related protein 2 96.4 0.085 2.9E-06 55.3 17.3 197 501-706 54-279 (377)
374 1tl2_A L10, protein (tachylect 96.4 0.15 5.1E-06 49.4 16.9 149 502-663 40-208 (236)
375 1gl4_A Nidogen-1, entactin; im 96.4 0.00081 2.8E-08 67.6 1.1 44 388-433 4-49 (285)
376 3fm0_A Protein CIAO1; WDR39,SG 96.4 0.69 2.4E-05 47.9 24.1 196 504-704 18-221 (345)
377 1nzi_A Complement C1S componen 96.3 0.0017 5.9E-08 60.3 3.2 42 388-429 116-158 (159)
378 1z68_A Fibroblast activation p 96.3 0.011 3.9E-07 68.6 10.9 124 480-608 33-187 (719)
379 4e54_B DNA damage-binding prot 96.3 0.12 4.2E-06 55.8 18.5 180 482-666 141-328 (435)
380 2xzm_R RACK1; ribosome, transl 96.3 1.2 4.3E-05 45.8 26.8 197 503-705 22-241 (343)
381 1yiq_A Quinohemoprotein alcoho 96.3 1.2 4.2E-05 51.2 27.5 69 656-726 455-524 (689)
382 3v9f_A Two-component system se 96.2 0.48 1.6E-05 55.5 24.3 222 477-710 326-570 (781)
383 1p22_A F-BOX/WD-repeat protein 96.2 1.7 5.7E-05 46.5 27.1 196 504-716 135-333 (435)
384 4aow_A Guanine nucleotide-bind 96.2 1.2 4.3E-05 45.1 28.7 203 502-710 128-339 (340)
385 3sfz_A APAF-1, apoptotic pepti 96.2 0.46 1.6E-05 58.7 25.2 232 476-716 812-1082(1249)
386 1kv9_A Type II quinohemoprotei 96.2 1.2 4.3E-05 51.0 26.9 78 638-717 385-497 (668)
387 2pbi_B Guanine nucleotide-bind 96.1 1.6 5.4E-05 45.4 29.3 207 500-714 62-277 (354)
388 3dw8_B Serine/threonine-protei 96.1 0.28 9.7E-06 52.4 20.2 211 502-717 28-325 (447)
389 3u7u_G Neuregulin 1; signaling 96.1 0.002 6.8E-08 47.8 1.7 41 177-217 4-50 (55)
390 3u7u_G Neuregulin 1; signaling 96.1 0.0029 9.8E-08 47.0 2.5 37 388-428 7-48 (55)
391 3mmy_A MRNA export factor; mRN 96.1 0.88 3E-05 46.7 23.1 132 483-624 64-201 (368)
392 3lrv_A PRE-mRNA-splicing facto 96.0 1.8 6.1E-05 44.5 26.9 159 503-665 126-292 (343)
393 1nr0_A Actin interacting prote 96.0 2.2 7.6E-05 48.1 27.5 160 501-666 102-271 (611)
394 2kl7_A Fibulin-4; secreted, ca 95.9 0.0062 2.1E-07 48.0 4.0 38 428-465 1-42 (71)
395 3gre_A Serine/threonine-protei 95.9 1.4 4.6E-05 47.1 24.3 209 502-716 63-300 (437)
396 3dwl_C Actin-related protein 2 95.9 0.098 3.3E-06 54.8 14.7 156 504-664 13-176 (377)
397 1nzi_A Complement C1S componen 95.9 0.0044 1.5E-07 57.5 3.5 51 416-470 106-158 (159)
398 2xe4_A Oligopeptidase B; hydro 95.8 0.61 2.1E-05 54.5 22.5 190 513-708 125-354 (751)
399 2oaj_A Protein SNI1; WD40 repe 95.8 0.87 3E-05 54.4 24.2 200 503-712 18-246 (902)
400 2pm7_B Protein transport prote 95.7 1.9 6.6E-05 43.3 25.6 204 503-708 10-238 (297)
401 1w6s_A Methanol dehydrogenase 95.7 1.9 6.6E-05 48.7 25.2 42 684-726 480-522 (599)
402 1kb0_A Quinohemoprotein alcoho 95.6 2.7 9.3E-05 48.2 26.5 195 514-715 77-353 (677)
403 2ad6_A Methanol dehydrogenase 95.5 4.2 0.00014 45.6 27.9 100 593-696 389-525 (571)
404 3lrv_A PRE-mRNA-splicing facto 95.5 2.1 7.3E-05 44.0 23.1 116 547-666 126-245 (343)
405 4aqs_A Laminin subunit beta-1; 95.3 0.016 5.4E-07 64.9 6.0 15 117-131 279-293 (525)
406 3b7f_A Glycosyl hydrolase, BNR 95.1 2.6 9E-05 44.5 22.8 229 476-716 24-329 (394)
407 1egf_A Epidermal growth factor 95.0 0.014 4.9E-07 42.9 2.9 37 389-429 3-44 (53)
408 1edm_B Factor IX; epidermal gr 94.9 0.009 3.1E-07 40.8 1.6 31 185-215 8-38 (39)
409 3f1s_B Vitamin K-dependent pro 94.9 0.012 4.2E-07 60.1 3.3 42 429-471 1-44 (283)
410 2hes_X YDR267CP; beta-propelle 94.9 3.9 0.00013 41.8 26.9 224 482-709 33-281 (330)
411 2oit_A Nucleoporin 214KDA; NH2 94.8 0.36 1.2E-05 52.3 15.1 122 548-671 94-229 (434)
412 4gga_A P55CDC, cell division c 94.8 4.9 0.00017 42.5 29.9 231 476-716 118-361 (420)
413 1gl4_A Nidogen-1, entactin; im 94.7 0.022 7.6E-07 57.2 4.4 43 428-473 3-48 (285)
414 3fm0_A Protein CIAO1; WDR39,SG 94.5 4.9 0.00017 41.3 28.4 155 502-661 61-221 (345)
415 1a3p_A Epidermal growth factor 94.5 0.016 5.6E-07 41.0 2.1 31 187-217 10-42 (45)
416 4h5i_A Guanine nucleotide-exch 94.5 1.9 6.6E-05 45.0 19.4 177 483-664 157-342 (365)
417 2xzm_R RACK1; ribosome, transl 94.5 5 0.00017 41.1 27.7 157 501-663 75-242 (343)
418 4h5i_A Guanine nucleotide-exch 94.4 3 0.0001 43.5 20.6 195 504-705 135-340 (365)
419 3bg1_A Protein SEC13 homolog; 94.2 5.2 0.00018 40.5 21.7 164 501-665 56-247 (316)
420 1egf_A Epidermal growth factor 94.2 0.03 1E-06 41.1 3.1 33 429-461 2-40 (53)
421 1g1s_A P-selectin; selectin, l 94.2 0.011 3.6E-07 55.0 0.8 31 401-435 131-161 (162)
422 1hae_A Heregulin-alpha; growth 94.2 0.016 5.4E-07 44.4 1.6 40 391-434 8-53 (63)
423 1w6s_A Methanol dehydrogenase 93.9 10 0.00035 42.6 26.4 79 638-716 245-350 (599)
424 1flg_A Protein (quinoprotein e 93.8 3.6 0.00012 46.2 20.8 86 638-726 416-535 (582)
425 2k2s_B Micronemal protein 6; m 93.8 0.023 8E-07 43.0 1.7 35 426-461 7-46 (61)
426 1sqj_A OXG-RCBH, oligoxylogluc 93.7 10 0.00035 44.3 25.1 230 483-716 37-340 (789)
427 3ca7_A Protein spitz; argos, E 93.6 0.01 3.5E-07 43.5 -0.4 42 410-461 3-44 (52)
428 1kv9_A Type II quinohemoprotei 93.2 14 0.00049 42.1 25.2 63 514-581 66-140 (668)
429 3bg1_A Protein SEC13 homolog; 93.2 4.3 0.00015 41.1 18.8 118 503-622 14-136 (316)
430 2hes_X YDR267CP; beta-propelle 93.1 8.5 0.00029 39.1 26.7 157 502-665 14-184 (330)
431 2oaj_A Protein SNI1; WD40 repe 93.1 7.8 0.00027 46.0 23.3 176 483-666 39-243 (902)
432 1a3p_A Epidermal growth factor 93.0 0.057 2E-06 38.1 2.7 24 401-428 15-40 (45)
433 1hae_A Heregulin-alpha; growth 92.9 0.022 7.5E-07 43.6 0.4 36 185-220 11-51 (63)
434 1k36_A Epiregulin; EGF-like fo 92.8 0.05 1.7E-06 38.6 2.2 23 402-428 18-42 (46)
435 2cn3_A Xyloglucanase, beta-1,4 92.8 4.6 0.00016 46.8 20.2 206 504-715 24-289 (737)
436 1sqj_A OXG-RCBH, oligoxylogluc 92.7 9.1 0.00031 44.7 22.7 209 503-715 15-275 (789)
437 4gq1_A NUP37; propeller, trans 92.7 11 0.00038 39.4 22.1 181 482-665 165-389 (393)
438 1nql_B Epidermal growth factor 92.4 0.032 1.1E-06 41.0 0.7 33 185-217 11-45 (53)
439 3zwu_A Alkaline phosphatase PH 92.3 1.1 3.7E-05 50.4 13.3 107 545-652 382-549 (592)
440 3ott_A Two-component system se 91.7 14 0.00047 42.7 22.7 217 475-707 384-625 (758)
441 3a0f_A Xyloglucanase; beta-pro 91.5 8.2 0.00028 44.9 20.4 161 502-667 20-215 (763)
442 3zwu_A Alkaline phosphatase PH 91.3 1.8 6.2E-05 48.5 13.6 107 501-608 382-549 (592)
443 1n1i_A Merozoite surface prote 90.9 0.31 1.1E-05 40.6 5.1 58 401-460 22-85 (105)
444 1yiq_A Quinohemoprotein alcoho 90.4 29 0.00098 39.7 25.3 55 640-696 481-536 (689)
445 1k36_A Epiregulin; EGF-like fo 90.2 0.07 2.4E-06 37.9 0.6 30 186-216 12-43 (46)
446 3ott_A Two-component system se 90.1 32 0.0011 39.6 24.3 210 474-696 73-297 (758)
447 2cn3_A Xyloglucanase, beta-1,4 89.9 32 0.0011 39.6 25.1 229 482-715 44-343 (737)
448 4gga_A P55CDC, cell division c 89.8 22 0.00074 37.4 30.5 221 482-709 168-396 (420)
449 1klo_A Laminin; glycoprotein; 89.7 0.31 1.1E-05 45.0 4.8 18 199-216 16-34 (162)
450 3b7f_A Glycosyl hydrolase, BNR 89.6 22 0.00076 37.2 21.8 161 504-672 178-379 (394)
451 4gq1_A NUP37; propeller, trans 89.5 22 0.00075 37.1 21.6 77 502-579 136-219 (393)
452 1ob1_C Major merozoite surface 89.5 0.36 1.2E-05 39.9 4.4 57 402-460 17-84 (99)
453 4ggc_A P55CDC, cell division c 88.4 21 0.0007 35.2 30.6 231 476-716 38-281 (318)
454 2j04_B YDR362CP, TAU91; beta p 88.2 24 0.00081 38.9 19.8 161 502-666 207-387 (524)
455 3vu4_A KMHSV2; beta-propeller 87.8 26 0.0009 35.8 24.4 190 505-709 61-272 (355)
456 2xbg_A YCF48-like protein; pho 87.7 26 0.00089 35.6 25.4 191 504-705 123-319 (327)
457 3f6k_A Sortilin; protein sorti 87.5 44 0.0015 38.0 22.6 131 550-695 93-240 (685)
458 1flg_A Protein (quinoprotein e 86.7 44 0.0015 37.2 30.0 79 638-716 250-363 (582)
459 3ca7_A Protein spitz; argos, E 86.6 0.12 4E-06 37.8 -0.2 31 186-216 14-48 (52)
460 4ggc_A P55CDC, cell division c 86.5 26 0.00089 34.4 29.5 216 483-705 89-312 (318)
461 2j04_A TAU60, YPL007P, hypothe 85.2 48 0.0016 36.8 19.7 129 504-641 131-273 (588)
462 1klo_A Laminin; glycoprotein; 84.9 0.63 2.2E-05 42.9 3.8 38 100-140 2-40 (162)
463 2j04_B YDR362CP, TAU91; beta p 83.9 19 0.00066 39.6 16.1 157 502-664 266-427 (524)
464 2p28_B Integrin beta-2; hybrid 83.8 0.73 2.5E-05 44.6 3.8 87 202-300 108-213 (217)
465 3ltf_D Protein spitz; receptor 82.7 0.2 6.8E-06 37.5 -0.6 31 187-217 15-49 (58)
466 3a0f_A Xyloglucanase; beta-pro 82.2 73 0.0025 36.8 20.8 188 507-705 548-759 (763)
467 2uvk_A YJHT; unknown function, 81.4 50 0.0017 33.6 22.9 145 569-716 168-350 (357)
468 2xbg_A YCF48-like protein; pho 81.1 50 0.0017 33.4 26.6 199 504-716 81-286 (327)
469 3vu4_A KMHSV2; beta-propeller 81.1 51 0.0018 33.6 26.9 168 484-665 82-271 (355)
470 1nt0_A MAsp2, mannose-binding 81.0 0.68 2.3E-05 47.0 2.6 31 398-428 132-162 (286)
471 3dem_A Complement factor MAsp- 79.8 0.84 2.9E-05 46.1 2.8 32 397-428 132-163 (278)
472 2ygo_A WIF-1, WNT inhibitory f 79.2 0.97 3.3E-05 42.1 2.7 31 183-216 150-180 (188)
473 3cfw_A L-selectin; EGF, cell a 78.9 0.74 2.5E-05 42.3 1.9 30 401-434 131-160 (164)
474 1ob1_C Major merozoite surface 78.6 0.5 1.7E-05 39.0 0.5 44 375-418 29-82 (99)
475 1n1i_A Merozoite surface prote 78.2 0.75 2.6E-05 38.3 1.4 44 375-418 35-83 (105)
476 2zux_A YESW protein; beta-prop 77.8 89 0.003 34.4 23.2 119 570-696 269-408 (591)
477 2p28_B Integrin beta-2; hybrid 77.1 0.38 1.3E-05 46.7 -0.8 95 100-216 97-214 (217)
478 3poj_A Mannan-binding lectin s 76.3 1.2 4E-05 38.2 2.2 38 4-41 76-115 (115)
479 3zyj_B Netrin-G1; cell adhesio 75.8 0.98 3.3E-05 48.1 1.9 27 186-215 371-397 (426)
480 1g1s_A P-selectin; selectin, l 73.6 0.85 2.9E-05 41.8 0.7 32 186-217 125-156 (162)
481 3ii7_A Kelch-like protein 7; p 72.8 77 0.0026 31.3 24.8 215 483-711 24-275 (306)
482 2hz6_A Endoplasmic reticulum t 72.6 2.4 8.1E-05 44.6 4.0 26 689-715 174-199 (369)
483 3zyj_B Netrin-G1; cell adhesio 72.4 1.7 5.9E-05 46.2 2.8 44 265-320 366-410 (426)
484 1nql_B Epidermal growth factor 71.4 1.3 4.5E-05 32.2 1.1 23 402-428 19-43 (53)
485 1q4g_A Prostaglandin G/H synth 68.6 1.2 4.3E-05 49.5 0.7 32 185-216 7-40 (553)
486 1q4g_A Prostaglandin G/H synth 68.0 2.2 7.6E-05 47.4 2.5 36 389-428 2-39 (553)
487 2wno_A Tumor necrosis factor-i 67.5 1.7 6E-05 39.2 1.3 41 4-44 79-121 (149)
488 2j04_A TAU60, YPL007P, hypothe 67.3 1.6E+02 0.0054 32.7 23.8 170 502-686 85-273 (588)
489 1nt0_A MAsp2, mannose-binding 66.1 3.3 0.00011 41.8 3.2 32 437-469 131-162 (286)
490 2vpj_A Kelch-like protein 12; 66.0 1E+02 0.0036 30.1 26.0 188 514-710 62-280 (301)
491 1spp_B Major seminal plasma gl 65.1 3.5 0.00012 35.3 2.7 40 4-44 71-112 (116)
492 2zuy_A YESX protein; beta-prop 64.3 1.8E+02 0.0061 32.2 16.5 131 527-664 274-426 (620)
493 3sbq_A Nitrous-oxide reductase 63.4 1.8E+02 0.0063 32.1 21.1 189 514-705 142-405 (638)
494 3nt1_A Prostaglandin-endoperox 63.0 2.5 8.7E-05 47.1 1.8 36 389-428 1-38 (587)
495 1sfp_A ASFP; spermadhesin, bov 62.9 3.9 0.00013 34.8 2.6 38 4-42 72-111 (114)
496 3nt1_A Prostaglandin-endoperox 61.4 2.1 7E-05 47.9 0.7 32 185-216 6-39 (587)
497 3e50_C Protransforming growth 60.9 3.6 0.00012 29.5 1.6 30 186-216 14-45 (50)
498 1spp_A Major seminal plasma gl 60.7 5.6 0.00019 33.5 3.2 37 4-42 68-106 (109)
499 3dem_A Complement factor MAsp- 60.2 5.3 0.00018 40.0 3.5 41 429-470 120-164 (278)
500 1iox_A Betacellulin; EGF-like 59.5 3.6 0.00012 29.5 1.4 30 186-216 14-45 (50)
No 1
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=100.00 E-value=6.7e-111 Score=987.66 Aligned_cols=611 Identities=41% Similarity=0.909 Sum_probs=345.1
Q ss_pred CCCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccc--cccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCc
Q psy8875 50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127 (734)
Q Consensus 50 ~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~--C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de 127 (734)
...+|+ +++|+|.+|+||+..|+|||..||.|||||.+ |...+|.+.+|+|.+++++|||..|+|||..||.||+||
T Consensus 20 ~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE 98 (791)
T 3m0c_C 20 VGDRCE-RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 98 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCcC-cCccCCCCCCEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCccc
Confidence 366898 89999999999999999999999999999997 887899999999997557999999999999999999999
Q ss_pred CCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCC
Q psy8875 128 KSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPE 207 (734)
Q Consensus 128 ~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~ 207 (734)
.+|...+|...+|+|.+|+||+..|+|||..||.||+||.+ |. ..
T Consensus 99 ~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~--------C~---------------------~~------ 143 (791)
T 3m0c_C 99 QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--------CP---------------------VL------ 143 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCccccCCeEECCCCCEECHHHcCCCcccCCCCccccc--------cc---------------------cc------
Confidence 99988899999999999999999999999999999999987 72 11
Q ss_pred CCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCC--CCC---------CCCCCCceecCCCC
Q psy8875 208 GLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK--KCH---------ETCRSDEFTCANGN 276 (734)
Q Consensus 208 G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~--~C~---------~~C~~~~~~C~~g~ 276 (734)
+|. .++|+|.+|+||+..|+|||..||.||+||. +|. ..|...+|+|.+|.
T Consensus 144 -----------------~C~-~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~ 205 (791)
T 3m0c_C 144 -----------------TCG-PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGE 205 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------ccc-cceeccCCCccccccccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccCCc
Confidence 566 5899999999999999999999999999996 673 36889999999999
Q ss_pred eecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccccccccCCCCCCCC----CCCCCCCCCCCcccccccc
Q psy8875 277 CIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS----TCPNATPMNSSVRIEGAVA 352 (734)
Q Consensus 277 Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~----~C~~~~~c~~~~~~~C~~~ 352 (734)
||+..|+|||..||.||+||.+|....|.+++|+|.+ +.||+..|+|||..||.|+ .|.....|..+.+|.|
T Consensus 206 Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C--- 281 (791)
T 3m0c_C 206 CIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC--- 281 (791)
T ss_dssp --------------------------------------------------------------------CCSTTCCCC---
T ss_pred eeccccccCCCCCCCCCCCCCCccccccCCCcceecC-CceEecceecCChhccccccccCcccccccccCCCcccc---
Confidence 9999999999999999999999998889999999998 7999999999999999998 6776666766778999
Q ss_pred ccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccC
Q psy8875 353 FIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE 432 (734)
Q Consensus 353 ~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~e 432 (734)
. ++.|++...+|++..+|++|++|....|+++||...++.|+|.|++++++|+|.|++||+| .++++|+++||
T Consensus 282 ----~--~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dide 354 (791)
T 3m0c_C 282 ----H--SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDE 354 (791)
T ss_dssp ----T--TSCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCC
T ss_pred ----C--CCcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcc
Confidence 4 5789999999999999999999998889999999888899999999999999999999999 58999999999
Q ss_pred cCCCCCcccceeccCCceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeec
Q psy8875 433 CETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVF 512 (734)
Q Consensus 433 C~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~ 512 (734)
|+.++.|+++|+|+.|+|+|.|++||.+..++++ |++++..++|||++.+.|+++.+++..+..++..+..++||+||+
T Consensus 355 C~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~-C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~ 433 (791)
T 3m0c_C 355 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV 433 (791)
T ss_dssp CSSSSSCTTTCCBCSSCBCCCCCSSEECCSSCCC-CEETTSCCEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEET
T ss_pred cCCCCCCCCeeecCCCCceeecCCCCEeCCCCce-eeecccccccccccccceeEeeccCCcceeeecCCCceEEEeecc
Confidence 9988999999999999999999999999888777 999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCcEEEEecCCC---CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC
Q psy8875 513 RTGMIFWSDISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL 589 (734)
Q Consensus 513 ~~~~lyw~d~~~~~I~~~~l~~g---~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l 589 (734)
..++|||+|...++|+++.+++. ...++++...+..|.||||||++++|||+|...++|++++++|+.+++|+...+
T Consensus 434 ~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l 513 (791)
T 3m0c_C 434 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 513 (791)
T ss_dssp TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT
T ss_pred cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC
Confidence 99999999999999999999843 234566666889999999999999999999999999999999999999998889
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 669 (734)
..|++|||||..|+|||+||+..++|++++|+|+.+++++...+.+|+|||||+.+++|||+|++.++|++++++|+.++
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~ 593 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 593 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE
Confidence 99999999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 670 ~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
+++.....+.+|++|++++++||||||.+++|+++++++|+.+++|... +.+|++|+
T Consensus 594 ~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~--l~~P~~i~ 650 (791)
T 3m0c_C 594 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMV 650 (791)
T ss_dssp EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECS--CSCCCCEE
T ss_pred EEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecC--CCCceeEe
Confidence 9987666789999999999999999999999999999999999888643 55666553
No 2
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=100.00 E-value=9.9e-108 Score=958.07 Aligned_cols=610 Identities=41% Similarity=0.911 Sum_probs=515.5
Q ss_pred CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccc--cccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcC
Q psy8875 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK 128 (734)
Q Consensus 51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~--C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~ 128 (734)
..+|. +++|+|.+|+||+..|+|||..||.|||||.+ |...+|.+.+|+|.+++++|||..|+|||..||.||+||.
T Consensus 3 ~~~C~-~~~f~C~~g~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~ 81 (699)
T 1n7d_A 3 GDRCE-RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ 81 (699)
T ss_dssp ------------------------------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTT
T ss_pred cCCCC-ccceeCCCCcEEcHHhcCCCcccCCCCCCCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCcccC
Confidence 45788 89999999999999999999999999999998 9888999999999986568999999999999999999999
Q ss_pred CCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCC
Q psy8875 129 SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEG 208 (734)
Q Consensus 129 ~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G 208 (734)
+|....|...+|+|.+|+||+..|+|||..||.|||||.+ |. ..
T Consensus 82 ~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~--------C~---------------------~~------- 125 (699)
T 1n7d_A 82 GCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--------CP---------------------VL------- 125 (699)
T ss_dssp SCSSCCCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSS--------CC---------------------CC-------
T ss_pred cccccccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCC--------cC---------------------cc-------
Confidence 9988899999999999999999999999999999999987 62 11
Q ss_pred CccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCC--CCCCC---------CCCCCceecCCCCe
Q psy8875 209 LKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCHE---------TCRSDEFTCANGNC 277 (734)
Q Consensus 209 ~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de--~~C~~---------~C~~~~~~C~~g~C 277 (734)
+|. ..+|+|.+|+||+..|+|||..||.||+|| .+|.. .|.+++|+|.+|.|
T Consensus 126 ----------------~C~-~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~C 188 (699)
T 1n7d_A 126 ----------------TCG-PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGEC 188 (699)
T ss_dssp ----------------CCC-SSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCC
T ss_pred ----------------ccC-ccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCce
Confidence 566 589999999999999999999999999999 89952 79999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccccccccCCCCCCCC----CCCCCCCCCCCccccccccc
Q psy8875 278 IQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS----TCPNATPMNSSVRIEGAVAF 353 (734)
Q Consensus 278 i~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~----~C~~~~~c~~~~~~~C~~~~ 353 (734)
|+.+|+|||+.||.|||||.+|....|.+.+|+|.+ ++||+..|+|||+.||.|+ .|.....|..+.+|.|
T Consensus 189 i~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C---- 263 (699)
T 1n7d_A 189 IHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC---- 263 (699)
T ss_dssp CSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSS-SCEEETTCCSSSCCCSSSSCSSSSTTCCCCCCSTTCCCC----
T ss_pred EechhccCCCCCCCCCcccccCCCcccCCCcEecCC-CceeeeecccCCCCCCCCCCccCCCCCCCcccCCCceec----
Confidence 999999999999999999999998899999999997 8999999999999999999 6776667766678999
Q ss_pred cCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875 354 IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433 (734)
Q Consensus 354 ~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC 433 (734)
. ++.|++...+|++..+|++|+||....|+++||...++.|++.|.+++++|+|.|++||+| .++++|+++|||
T Consensus 264 ---~--~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~dideC 337 (699)
T 1n7d_A 264 ---H--SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDEC 337 (699)
T ss_dssp ---T--TSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCCCCCCC
T ss_pred ---C--CCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccCCCCcEEeCCCCeEc-CCCCcccCcccc
Confidence 3 6789999999999999999999998889999999888899999999999999999999999 689999999999
Q ss_pred CCCCCcccceeccCCceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeecc
Q psy8875 434 ETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFR 513 (734)
Q Consensus 434 ~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~ 513 (734)
+.+++|+|+|+|+.|+|+|.|++||.+..++++ |++++..++|||++.+.|+++.+++..+..++..+..|.+|+|++.
T Consensus 338 ~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~-C~~~~~~~~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~ 416 (699)
T 1n7d_A 338 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 416 (699)
T ss_dssp SSSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCC-CBCCSSCCCBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETT
T ss_pred CCCCccccccccCCCCeeeeeecccccCCCCCc-ccccccceeEEecCccceEEEeCCCCcceeeeccCcceEEEccccc
Confidence 988899999999999999999999999988777 9999889999999999999999999988888888999999999999
Q ss_pred CCeEEEEEeCCCcEEEEecCC---CCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCC
Q psy8875 514 TGMIFWSDISEKKIYKAPIDE---GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~---g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~ 590 (734)
.++|||+|...++|+++++++ +...+.++...+..|.||||||.+++|||+|...++|.+++++|..+++++...+.
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~ 496 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS 496 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC
Confidence 999999999999999999984 13344444456788999999999999999999999999999999999888877889
Q ss_pred CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEE
Q psy8875 591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRL 670 (734)
Q Consensus 591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~ 670 (734)
.|++|||||..|+|||++++..++|++++|+|+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++
T Consensus 497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~ 576 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 576 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE
T ss_pred CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE
Confidence 99999999999999999988668999999999999888878899999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 671 VLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 671 i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
++.....+.+|+||++++++|||+||++++|+++++.+|+.+++|... +.+|++|+
T Consensus 577 ~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~--~~~P~~i~ 632 (699)
T 1n7d_A 577 ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMV 632 (699)
T ss_dssp ECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTT--CSSCCCCC
T ss_pred EEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecC--CCCCcEEE
Confidence 886555688999999999999999999999999999999988887543 55666664
No 3
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=100.00 E-value=2.9e-83 Score=753.09 Aligned_cols=571 Identities=30% Similarity=0.622 Sum_probs=275.9
Q ss_pred CcCCCCCCCCCceecCC--CceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCC
Q psy8875 48 YWRSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGS 125 (734)
Q Consensus 48 c~~~~~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~ 125 (734)
| ...+|+ +.+|+|.+ |+|||..|+|||..||.|||||.+|...+|.+.+|+|.+ |+||+..|+|||..||.||+
T Consensus 60 C-~~~~C~-~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~dC~dgs 135 (791)
T 3m0c_C 60 C-LSVTCK-SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD--GKCISRQFVCDSDRDCLDGS 135 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-ccCccC-cCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCC--CCEECHHHcCCCcccCCCCc
Confidence 7 567898 89999998 899999999999999999999999988899999999987 68999999999999999999
Q ss_pred CcCCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccC
Q psy8875 126 DEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCAC 205 (734)
Q Consensus 126 de~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C 205 (734)
||.+|...+|.+.+|+|.+|+||+..|+|||..||.||+||.... |..
T Consensus 136 DE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~------C~~-------------------------- 183 (791)
T 3m0c_C 136 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR------CRG-------------------------- 183 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeccCCCccccccccCCCCCcCCCCCCccccc------CCC--------------------------
Confidence 999998889999999999999999999999999999999997522 310
Q ss_pred CCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeecCCccc
Q psy8875 206 PEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLC 284 (734)
Q Consensus 206 ~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~-~~C~~~~~~C~~g~Ci~~~~~C 284 (734)
++.. .....+|. .++|+|.+|+||+.+|+|||..||.|++||.+|. .+|.+++|+|.+|.||+..|+|
T Consensus 184 --~~~~--------~~~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~C 252 (791)
T 3m0c_C 184 --LYVF--------QGDSSPCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 252 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cccc--------CCCCCCCC-CCcccccCCceeccccccCCCCCCCCCCCCCCccccccCCCcceecCCceEecceec
Confidence 0000 00012677 6899999999999999999999999999999997 5799999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCC-CCC-CCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCccc
Q psy8875 285 DGDDDCKDGSDEKSCQP-VKC-TAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAM 362 (734)
Q Consensus 285 dg~~dC~dgsDe~~C~~-~~C-~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~~~~~~~~ 362 (734)
||..||.||+||.+|.. ..| .+.+|+|.+ +.||+..++|++..||.++..+....|.. ..|... ++.....
T Consensus 253 dg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~---~~C~~~---~~~C~~~ 325 (791)
T 3m0c_C 253 DREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGT---NECLDN---NGGCSHV 325 (791)
T ss_dssp --------------------CCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSC---CSTTTG---GGGCSSE
T ss_pred CChhccccccccCcccccccccCCCccccCC-CcccccccccCCccccccccCcccccccc---cccccc---ccCcccc
Confidence 99999999999999984 346 478899998 89999999999999999985444333421 122110 0111345
Q ss_pred ccc--cccccCCCCCCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCC
Q psy8875 363 KIV--RTAVCDKHPDCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGS 438 (734)
Q Consensus 363 C~~--~~~~C~~~~~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~ 438 (734)
|+. .++.| .|+.||.. ++..| ++|||. .++.|+++|+|++++|+|.|++||+|..++++|++++++.
T Consensus 326 C~~~~~~y~C----~C~~Gy~l~~g~~C~dideC~-~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~~p---- 396 (791)
T 3m0c_C 326 CNDLKIGYEC----LCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA---- 396 (791)
T ss_dssp EEECSBSEEE----ECCTTCEEETTTEEECCCCCS-SSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTSCC----
T ss_pred ccCCCCCccc----CCCCCCccCCCCccccCcccC-CCCCCCCeeecCCCCceeecCCCCEeCCCCceeeeccccc----
Confidence 654 46778 89999953 34468 899998 5679999999999999999999999999999999988753
Q ss_pred cccceeccCCceEEecC-CCeeeCCCCCcccccc--cc-cceeeeeec--cceEEeecCCC----ceEEEec-CCcceEE
Q psy8875 439 CSQICLNEKGGFKCECV-AGYIKDPHHPTQCKAA--EG-HASLLFARK--HDIRKISLDHH----EMTAIVN-STKSATA 507 (734)
Q Consensus 439 C~~~C~n~~g~~~C~C~-~gy~~~~~~~t~C~~~--~~-~~~l~~~~~--~~I~~i~l~~~----~~~~l~~-~~~~~~~ 507 (734)
..+..+....+.-... ..|...........++ .. ...|||++. ..|+++.+++. ....++. .+..|.|
T Consensus 397 -~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 -YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp -EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred -ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 1223333322222111 1121110001112221 11 346777664 56999999874 4455555 7889999
Q ss_pred EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc
Q psy8875 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR 586 (734)
Q Consensus 508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~ 586 (734)
||+|+..++|||+|...++|++++++ |..+++++...+..|.+|||||..++|||||++. .+|++++++|+.+++++.
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 99999999999999999999999999 6677777777889999999999999999999986 899999999999999998
Q ss_pred CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEe-c
Q psy8875 587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-Y 663 (734)
Q Consensus 587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~ 663 (734)
..+.+|+|||||+..++|||+|++ ..+|++++++|+.+++++.. .+.+|.||++ ++++|||+|+.+++|++++ +
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~-~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCC-CCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCC
Confidence 899999999999999999999976 48999999999999999875 3566777776 5889999999999999998 6
Q ss_pred CCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875 664 NGGNRRLVLYSPQTLSHPFSISTFED 689 (734)
Q Consensus 664 dG~~~~~i~~~~~~~~~P~gl~v~~~ 689 (734)
+|+.+++|.. .+.+|++|++++.
T Consensus 632 tG~~~~~l~~---~l~~P~~i~v~h~ 654 (791)
T 3m0c_C 632 TGSDVNLLAE---NLLSPEDMVLFHN 654 (791)
T ss_dssp TCCCCEEEEC---SCSCCCCEEEESG
T ss_pred CCcceEEeec---CCCCceeEeeecc
Confidence 7888888763 4789999999764
No 4
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=100.00 E-value=4.1e-79 Score=715.75 Aligned_cols=571 Identities=30% Similarity=0.621 Sum_probs=446.6
Q ss_pred CcCCCCCCCCCceecCC--CceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCC
Q psy8875 48 YWRSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGS 125 (734)
Q Consensus 48 c~~~~~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~ 125 (734)
| ...+|+ +.+|+|.+ ++|||..|+|||..||.|||||.+|....|.+.+|+|.+ |+||+..|+|||..||.||+
T Consensus 42 C-~~~~C~-~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~--g~Ci~~~~~Cdg~~dC~dgs 117 (699)
T 1n7d_A 42 C-LSVTCK-SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD--GKCISRQFVCDSDRDCLDGS 117 (699)
T ss_dssp ---CCSCS-SSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSC--C----CCCTTCSSCCSSSSC
T ss_pred c-CCcCCC-CCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCC--CCEecHHHcCCCcCcCCCCC
Confidence 7 567898 89999987 489999999999999999999999988899999999987 68999999999999999999
Q ss_pred CcCCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccC
Q psy8875 126 DEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCAC 205 (734)
Q Consensus 126 de~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C 205 (734)
||.+|...+|.+.+|+|.+|+||+..|+|||..||.|||||.... |.... ..
T Consensus 118 DE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~------C~~~~------------------~~---- 169 (699)
T 1n7d_A 118 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR------CRGLY------------------VF---- 169 (699)
T ss_dssp SSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSS------SSCCC------------------CC----
T ss_pred ccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCccccccc------CCCcc------------------cc----
Confidence 999998889999999999999999999999999999999993321 52110 00
Q ss_pred CCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeecCCccc
Q psy8875 206 PEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLC 284 (734)
Q Consensus 206 ~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~-~~C~~~~~~C~~g~Ci~~~~~C 284 (734)
. ....+|. .++|+|.+|+||+.+|+|||..||.||+||.+|. .+|.+.+|+|.+|.||+.+|+|
T Consensus 170 -~-------------~~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~C 234 (699)
T 1n7d_A 170 -Q-------------GDSSPCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234 (699)
T ss_dssp -S-------------SCCCCSC-SSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSSSCEEETTCCS
T ss_pred -c-------------CCCCCCC-CcceecCCCceEechhccCCCCCCCCCcccccCCCcccCCCcEecCCCceeeeeccc
Confidence 0 0122687 6899999999999999999999999999999997 5899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCC-CCC-CCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCccc
Q psy8875 285 DGDDDCKDGSDEKSCQP-VKC-TAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAM 362 (734)
Q Consensus 285 dg~~dC~dgsDe~~C~~-~~C-~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~~~~~~~~ 362 (734)
||..||.||+||.+|.. ..| .+.+|+|.+ ++||+..++|++..||.++.-+....|. ...|... ++.....
T Consensus 235 dg~~dC~dgsde~~C~~~~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~---~~eC~~~---~~~C~~~ 307 (699)
T 1n7d_A 235 DREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECG---TNECLDN---NGGCSHV 307 (699)
T ss_dssp SSCCCSSSSCSSSSTTCCCCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCC---CCCTTSS---TTTSCTT
T ss_pred CCCCCCCCCCccCCCCCCCcccCCCceecCC-CcEeCCcccccccceecCcccccccccc---ccccccc---ccCcCCC
Confidence 99999999999999974 468 578899998 8999999999999999998322222221 1112100 0101334
Q ss_pred ccc--cccccCCCCCCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCC
Q psy8875 363 KIV--RTAVCDKHPDCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGS 438 (734)
Q Consensus 363 C~~--~~~~C~~~~~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~ 438 (734)
|+. .++.| .|+.||.. ++..| ++|||+. ++.|+++|+|++++|+|.|++||.|..++++|+++++..
T Consensus 308 C~~~~~~~~C----~C~~G~~~~~~~~C~dideC~~-~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~---- 378 (699)
T 1n7d_A 308 CNDLKIGYEC----LCPDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA---- 378 (699)
T ss_dssp CCCCTTCCCC----CCCSSSCCCSSSCCCCCCCCSS-SSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCC----
T ss_pred cccCCCCcEE----eCCCCeEcCCCCcccCccccCC-CCccccccccCCCCeeeeeecccccCCCCCcccccccce----
Confidence 544 35667 89999974 34568 8999973 578999999999999999999999999999998775432
Q ss_pred cccceeccCCceEEecCC-CeeeCCCCCcccc--ccc-ccceeeeee--ccceEEeecCC----CceEEEe-cCCcceEE
Q psy8875 439 CSQICLNEKGGFKCECVA-GYIKDPHHPTQCK--AAE-GHASLLFAR--KHDIRKISLDH----HEMTAIV-NSTKSATA 507 (734)
Q Consensus 439 C~~~C~n~~g~~~C~C~~-gy~~~~~~~t~C~--~~~-~~~~l~~~~--~~~I~~i~l~~----~~~~~l~-~~~~~~~~ 507 (734)
..+..+....+...... .|.........-. +.. ....|||++ .+.|+++.+++ .....++ ..+..|.+
T Consensus 379 -~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 -YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp -CBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred -eEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 22333333333322221 1211111000011 122 134677765 46899999886 4444444 35678999
Q ss_pred EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc
Q psy8875 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR 586 (734)
Q Consensus 508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~ 586 (734)
||+|+..++|||+|...++|++++++ |..+++++...+..|.+|||||..++||||++.. ++|++++++|+.+++++.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 99999999999999999999999998 5666666666788999999999999999999875 899999999999888887
Q ss_pred CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEec-
Q psy8875 587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY- 663 (734)
Q Consensus 587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~- 663 (734)
..+..|+|||||+..++|||+|++ ..+|++++++|+.+++++.. .+.+|.||+|| .++|||+|+..++|.+++.
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--TTEEEEECSTTTCEEEEETT
T ss_pred CCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCCCceEEEEecCCcCCCceEeEEE--CCEEEEEeCCCCeEEEEEcc
Confidence 789999999999999999999975 58999999999999888753 47889999997 5799999999999999996
Q ss_pred CCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875 664 NGGNRRLVLYSPQTLSHPFSISTFED 689 (734)
Q Consensus 664 dG~~~~~i~~~~~~~~~P~gl~v~~~ 689 (734)
+|+.+++|. ..+.+|++|+++..
T Consensus 614 ~G~~~~~i~---~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 614 TGSDVNLLA---ENLLSPEDMVLFHQ 636 (699)
T ss_dssp TEEEEECCC---TTCSSCCCCCBCSS
T ss_pred CCCceEEee---cCCCCCcEEEEeCc
Confidence 566655553 23678999988654
No 5
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=100.00 E-value=3.4e-58 Score=505.20 Aligned_cols=334 Identities=43% Similarity=0.908 Sum_probs=306.7
Q ss_pred cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcccc
Q psy8875 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469 (734)
Q Consensus 390 ~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~ 469 (734)
|||...++.|++.|+|++++|+|.|++||+| .++++|+++|||+.+++|++.|+|+.|+|.|.|.+||.+..++++ |+
T Consensus 1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dideC~~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~-C~ 78 (400)
T 3p5b_L 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CK 78 (400)
T ss_dssp CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCCCSTTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSS-CC
T ss_pred CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCcccCchhhhccCCCCCccCCCccceeeeccccccccccccc-ee
Confidence 5788778899999999999999999999999 589999999999988899999999999999999999999988777 99
Q ss_pred cccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC---CceEEEEeCCC
Q psy8875 470 AAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---SERTVVIEEDK 546 (734)
Q Consensus 470 ~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g---~~~~~~~~~~~ 546 (734)
+.+..++|+|++++.|+++++++..++.++..+..|.+||||+.+++|||+|...++|+++.++++ ...+.++...+
T Consensus 79 ~~~~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 79 AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp CSTTSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eccccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999842 23455666688
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
..|.||||||.+++|||+|...++|++++++|..+++++...+..|++|||||..|+|||+||+..++|++++|||+.++
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 89999999999999999999999999999999999999988899999999999999999999987789999999999999
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEec
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~ 706 (734)
+++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++.....+.+|+||++++++|||+||++++|+++++
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence 99988999999999999999999999999999999999999999987656789999999999999999999999999999
Q ss_pred cCCCceEEEecccccCCCccC
Q psy8875 707 FTGDNLTAITGVHQTHEPLNS 727 (734)
Q Consensus 707 ~~G~~~~~l~~~~~l~~P~~i 727 (734)
.+|+.+++|... +.+|+.|
T Consensus 319 ~~G~~~~~i~~~--~~~p~~i 337 (400)
T 3p5b_L 319 LTGSDVNLLAEN--LLSPEDM 337 (400)
T ss_dssp SSCCCCEEEECS--CSCEEEE
T ss_pred CCCCceEEEecC--CCCCceE
Confidence 999998888643 4444443
No 6
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=100.00 E-value=9.9e-57 Score=491.67 Aligned_cols=335 Identities=42% Similarity=0.865 Sum_probs=258.0
Q ss_pred cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcc
Q psy8875 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQ 467 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~ 467 (734)
++|||..+++.|+|.|.+.+++|+|.|++||+|..++++|+++|||+.+++|+|.|+|+.|+|.|.|++||.+.++.++
T Consensus 2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~- 80 (386)
T 3v65_B 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS- 80 (386)
T ss_dssp --------------------------------------------------CCTTEEC-----CCEECCTTEEECTTSSC-
T ss_pred CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcccCcCCCCCCCCeEEECCCceEcCCCCe-
Confidence 5789998889999999999999999999999999999999999999877899999999999999999999999888766
Q ss_pred cccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC
Q psy8875 468 CKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT 547 (734)
Q Consensus 468 C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~ 547 (734)
|++.+..++|+|++.+.|+++++++..++.++..+..|.+|+||+..++|||+|...++|++++++ +...+.++..++.
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEECSSCS
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEEeCCCC
Confidence 999888999999999999999999999999999999999999999999999999999999999999 4555556666788
Q ss_pred CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE
Q psy8875 548 IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~ 627 (734)
.|.||||||.+++|||+|...++|++++++|+.+++++...+..|++|||||..|+|||+|++..++|+|++++|+.+++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 239 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence 99999999999999999999999999999999999999888999999999999999999999866899999999999999
Q ss_pred EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEecc
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~ 707 (734)
++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++.. .+.+|+||++++++|||+||++++|.++++.
T Consensus 240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~giav~~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ--GLPHPFAITVFEDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS--SCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC--CCCCceEEEEECCEEEEeeCCCCeEEEEECC
Confidence 99888999999999999999999999999999999999999888763 4789999999999999999999999999999
Q ss_pred CCCceEEEecccccCCCccCC
Q psy8875 708 TGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 708 ~G~~~~~l~~~~~l~~P~~i~ 728 (734)
+|+.+++|... +..|++|+
T Consensus 318 ~G~~~~~i~~~--~~~p~gi~ 336 (386)
T 3v65_B 318 TGKNQEIIRNK--LHFPMDIH 336 (386)
T ss_dssp TCCSCEEEECS--CSCCCCEE
T ss_pred CCcceEEEccC--CCCCceEE
Confidence 99999888743 55666553
No 7
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=100.00 E-value=6e-49 Score=424.10 Aligned_cols=293 Identities=42% Similarity=0.843 Sum_probs=259.5
Q ss_pred ccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEe
Q psy8875 430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509 (734)
Q Consensus 430 ~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~ 509 (734)
+|||+.++.|+|+|.|++|+|+|.|++||.+.+++++ |++.+..++|+|++.+.|+++.+++..++.++..+..|.+|+
T Consensus 1 i~ec~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~-C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~ 79 (349)
T 3v64_C 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD 79 (349)
T ss_dssp --------CCSSEECCC---CCEECCTTEEECTTSSC-EEESSSCCEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEE
T ss_pred CcccCCCCCCcCeeecCCCCeEEECCCCccCCCCCCc-ccccccCceeEeecccceEEEeCCCCeeEEeecCCCceEEEE
Confidence 5789877899999999999999999999999988776 999888999999999999999999999999999999999999
Q ss_pred eeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC
Q psy8875 510 FVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL 589 (734)
Q Consensus 510 ~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l 589 (734)
||+.++.|||+|...++|+++++++ ...+.++..++..|.||||||.+++|||+|...++|++++++|+.+++++...+
T Consensus 80 ~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l 158 (349)
T 3v64_C 80 FHHRRELVFWSDVTLDRILRANLNG-SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 158 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC
T ss_pred EeccccEEEEEeccCCceEEEecCC-CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC
Confidence 9999999999999999999999994 445555566788999999999999999999999999999999999999988889
Q ss_pred CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 669 (734)
..|++|||||..|+|||+|++..++|+|+++||+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.++
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~ 238 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE
Confidence 99999999999999999999866899999999999998888889999999999999999999999999999999999998
Q ss_pred EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 670 ~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
+++.. .+.+|+||++++++||||||++++|.++++.+|+.+++|... +.+|++|+
T Consensus 239 ~~~~~--~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~--~~~p~gi~ 293 (349)
T 3v64_C 239 AVISQ--GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNK--LHFPMDIH 293 (349)
T ss_dssp EEECS--SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECS--CSCCCCEE
T ss_pred EEEeC--CCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccC--CCCCceEE
Confidence 88764 378999999999999999999999999999999999888743 55666553
No 8
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=100.00 E-value=4.7e-45 Score=421.28 Aligned_cols=284 Identities=32% Similarity=0.603 Sum_probs=253.5
Q ss_pred cccCcCC-CCCcccceeccC-CceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCce---EEEecCCc
Q psy8875 429 DIDECET-PGSCSQICLNEK-GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEM---TAIVNSTK 503 (734)
Q Consensus 429 ~~~eC~~-~~~C~~~C~n~~-g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~---~~l~~~~~ 503 (734)
.+|||+. ++.|+|+|.+++ ++|.|.|++||.+..++++ |++. .++|+|+....|+++.++.... ...+.++.
T Consensus 264 ~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~-C~~~--~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~ 340 (628)
T 4a0p_A 264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRT-CSAP--TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLR 340 (628)
T ss_dssp CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSC-EECC--SSEEEEEETTEEEEECCCTTCCCCEECCCTTCS
T ss_pred cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCc-Cccc--cceeeeeccceEEEEecccccCceEEEEehhcC
Confidence 4788975 488999999999 9999999999999988777 9874 6799999999999999876532 33345788
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
++.+|+||+.+++|||+|...++|+|+.+++....+++.. ..+..|.||||||.+++|||+|...++|++++++|
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G 420 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence 9999999999999999999999999999984333344432 25678999999999999999999999999999999
Q ss_pred CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc-eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~-~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
+.+++|+...+..|++|||||.+|+||||||+..+ +|+|++|||+.+++++...+.+|+|||||+.+++|||+|++.++
T Consensus 421 ~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~ 500 (628)
T 4a0p_A 421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRR 500 (628)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCE
Confidence 99999988889999999999999999999998765 99999999999999999899999999999999999999999999
Q ss_pred EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
|++++++|++++++.. ..+.+|+||++++++||||||.+++|++++|.+|+..++|..
T Consensus 501 I~~~~~dG~~r~~~~~--~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~ 558 (628)
T 4a0p_A 501 IESSDLSGANRIVLED--SNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQA 558 (628)
T ss_dssp EEEEETTSCSCEEEEC--SSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEEC
T ss_pred EEEEeCCCCceEEEEc--CCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEec
Confidence 9999999999999886 357899999999999999999999999999999999888865
No 9
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=100.00 E-value=1.6e-44 Score=416.51 Aligned_cols=290 Identities=36% Similarity=0.761 Sum_probs=257.6
Q ss_pred ccCcCC-CCCcccceeccC--CceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEE---ecCCc
Q psy8875 430 IDECET-PGSCSQICLNEK--GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---VNSTK 503 (734)
Q Consensus 430 ~~eC~~-~~~C~~~C~n~~--g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l---~~~~~ 503 (734)
.++|.. ++.|+|+|.+.+ .+|+|.|++||.+..++++ |++. .+++|+|+.+..|+++.++....+.+ +.++.
T Consensus 272 ~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~-C~~~-~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~ 349 (619)
T 3s94_A 272 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT-CKDG-ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIR 349 (619)
T ss_dssp CCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSC-BCSS-CSEEEEEEESSCEEEEESSSTTCCCEECCCSCCS
T ss_pred cccccCCCCcccceEECCCCCCCceEeCCchheecccCcc-cCCC-CceEEEEEcccceEEEecCCCccceeEEeccccC
Confidence 567864 489999999887 4799999999999988776 9874 47899999999999999987765433 35688
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
++.+||||+.+++|||+|...++|+|+.++ |+..+.++..++..|.||||||.+++|||+|...++|++++++|+.+++
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~-g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcC-CCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 999999999999999999999999999999 5555666667889999999999999999999999999999999999999
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
|+...+..|++|||||.+|+||||||+..++|++++|||+.+++++...+.+|+|||||+.+++|||+|+..++|+++++
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 99889999999999999999999999877899999999999999998889999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccC
Q psy8875 664 NGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNS 727 (734)
Q Consensus 664 dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i 727 (734)
+|+.+++++. ..+.+|+||++++++||||||.+++|+++++.+| ..+++... +..|++|
T Consensus 509 dG~~~~~~~~--~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~--~~~~~~i 567 (619)
T 3s94_A 509 DGTGRRVLVE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQ--LPDLMGL 567 (619)
T ss_dssp SSCCCEEEEE--CCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECS--CCCEEEE
T ss_pred CCCceEEEec--cCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecC--CCCCcee
Confidence 9999999886 3588999999999999999999999999999999 44555432 4455543
No 10
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=100.00 E-value=9.6e-41 Score=354.64 Aligned_cols=253 Identities=43% Similarity=0.857 Sum_probs=227.6
Q ss_pred cccceeeeeeccceEEeecCCC--ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 472 EGHASLLFARKHDIRKISLDHH--EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 472 ~~~~~l~~~~~~~I~~i~l~~~--~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
+++|+|||++++.|+++++++. .+..++.++..+++|+||+.++.|||+|...++|+++.++++...+.++..++..|
T Consensus 2 g~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 2 GSAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp --CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred CCccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 4578999999999999999987 46677788889999999999999999999999999999995543344555578899
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI 629 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv 629 (734)
.||||||.+++|||+|...++|++++++|..+++++...+..|++|||||..|+|||+|++..++|++++|||+.+++++
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 99999999999999999999999999999999999888899999999999999999999987789999999999999998
Q ss_pred EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCC
Q psy8875 630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G 709 (734)
...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++. ..+.+|+||+++++.|||+||++++|.++++.+|
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence 88899999999999999999999999999999999999999885 3588999999999999999999999999999999
Q ss_pred CceEEEecccccCCCccCC
Q psy8875 710 DNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 710 ~~~~~l~~~~~l~~P~~i~ 728 (734)
+.+++|... +.+|++|+
T Consensus 240 ~~~~~i~~~--~~~P~~i~ 256 (318)
T 3sov_A 240 EGLREIHSD--IFSPMDIH 256 (318)
T ss_dssp CSCEEEECC--CSSCCCEE
T ss_pred CceEEEeCC--CCCCcEEE
Confidence 988887643 55666654
No 11
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=100.00 E-value=4.3e-39 Score=342.46 Aligned_cols=252 Identities=41% Similarity=0.813 Sum_probs=226.2
Q ss_pred cceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CCceEEEEeCCCCCcc
Q psy8875 474 HASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GSERTVVIEEDKTIAD 550 (734)
Q Consensus 474 ~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~~~~~~~~~~~~~p~ 550 (734)
+|+|||++++.|+++++++..+..+++.+..|.+++||+.+++|||+|...++|+++++++ ++..+.++...+..|.
T Consensus 1 ~~~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 1 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp CCEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred CCEEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4789999999999999999999889999999999999999999999999999999999985 1444555555778999
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
||||||.+++|||+|...++|.+++++|+.+++++...+..|++|||||..|+|||+|++..++|+++++||+.+++++.
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 99999999999999999999999999999988888778899999999999999999998755899999999999998888
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
..+.+|+||+||+.+++|||+|+..++|++++++|+.+++++.....+.+|+||++++++|||+||++++|.++++.+|+
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 88999999999999999999999999999999999999998875456789999999999999999999999999999999
Q ss_pred ceEEEecccccCCCccC
Q psy8875 711 NLTAITGVHQTHEPLNS 727 (734)
Q Consensus 711 ~~~~l~~~~~l~~P~~i 727 (734)
.+++|... +..|++|
T Consensus 241 ~~~~i~~~--~~~p~~i 255 (316)
T 1ijq_A 241 DVNLLAEN--LLSPEDM 255 (316)
T ss_dssp CCEEEECS--CSCCCCE
T ss_pred ceEEEecC--CCCceEE
Confidence 88888643 5566665
No 12
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=100.00 E-value=2.2e-38 Score=365.62 Aligned_cols=248 Identities=41% Similarity=0.797 Sum_probs=223.6
Q ss_pred ccceeeeeeccceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875 473 GHASLLFARKHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD 550 (734)
Q Consensus 473 ~~~~l~~~~~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~ 550 (734)
++++|+|++++.|+++++++.....++ .++..|.+||||+.+++|||+|...++|++++++ |+..+.++..++..|.
T Consensus 5 p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 5 PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGLDYPE 83 (628)
T ss_dssp CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCC
T ss_pred CCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEEeCCCCCcc
Confidence 468999999999999999987765554 3678999999999999999999999999999999 5555666666788999
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
||||||.+++|||+|...++|++++++|+.+++++...+..|++|||||..|+||||||+..++|+|++|||+.+++++
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 9999999999999999999999999999999999888899999999999999999999987799999999999999887
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
..+.+|+||+||+.+++|||+|+..++|++++++|+.++++.. .+.+|+||++++++||||||.+++|++++|.+|+
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~---~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE---CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec---cCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 4789999999999999999999999999999999999976653 4789999999999999999999999999999999
Q ss_pred ceEEEecccccCCCccC
Q psy8875 711 NLTAITGVHQTHEPLNS 727 (734)
Q Consensus 711 ~~~~l~~~~~l~~P~~i 727 (734)
.+++|... +..|++|
T Consensus 240 ~~~~l~~~--~~~p~~i 254 (628)
T 4a0p_A 240 NRTIIQGH--LDYVMDI 254 (628)
T ss_dssp SCEEEECS--CCSCCEE
T ss_pred ceEEEecC--CCCccee
Confidence 99988753 4455544
No 13
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=100.00 E-value=1.4e-38 Score=366.97 Aligned_cols=242 Identities=45% Similarity=0.887 Sum_probs=208.8
Q ss_pred cceeeeeeccceEEeecCCC--ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 474 HASLLFARKHDIRKISLDHH--EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 474 ~~~l~~~~~~~I~~i~l~~~--~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
.|+|++++++.|+++++++. ++..++..+..|.||||++.+++|||+|...++|+++.+++....+.++..++..|.|
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 57899999999999999976 4666778899999999999999999999999999999999543345666668889999
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
|||||.+++|||+|...++|.+++++|+.+++++...+..|++|||||.+|+||||||+..++|+|++|||+.+++++..
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 99999999999999999999999999999999998889999999999999999999998778999999999999999988
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~ 711 (734)
.+.+|+|||||+.+++|||+|...++|++++++|+.+++++. ..+.+|+||++++++||||||.+++|+++++.+|+.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSSEEEEECTTTCSEEEEESSSCCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcc
Confidence 899999999999999999999999999999999999998875 347899999999999999999999999999999998
Q ss_pred eEEEec
Q psy8875 712 LTAITG 717 (734)
Q Consensus 712 ~~~l~~ 717 (734)
+++|..
T Consensus 247 ~~~i~~ 252 (619)
T 3s94_A 247 LREIHS 252 (619)
T ss_dssp CEECCS
T ss_pred cEEEec
Confidence 887754
No 14
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=100.00 E-value=1.6e-35 Score=324.94 Aligned_cols=302 Identities=21% Similarity=0.426 Sum_probs=230.9
Q ss_pred CCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEE
Q psy8875 375 DCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC 452 (734)
Q Consensus 375 ~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C 452 (734)
.|+.||.. ++..| ++|||. .+..|++.|+|++++|+|.|++||.+..++++|+++++... .+-.+...-+.-
T Consensus 24 ~C~~G~~~~~~~~C~dideC~-~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~-----ll~~~~~~I~~i 97 (400)
T 3p5b_L 24 LCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY-----LFFTNRHEVRKM 97 (400)
T ss_dssp ECCTTEEECSSSCEEECCCCS-TTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCE-----EEEEETTEEEEE
T ss_pred ECCCCCCcCCCCcccCchhhh-ccCCCCCccCCCccceeeeccccccccccccceeeccccce-----eEEeccceeEEE
Confidence 56666642 23457 899998 45789999999999999999999999999999988754210 011111000000
Q ss_pred ecC-CCeee--CCCCCccccccc-ccceeeeee--ccceEEeecCC----CceEEEec-CCcceEEEeeeccCCeEEEEE
Q psy8875 453 ECV-AGYIK--DPHHPTQCKAAE-GHASLLFAR--KHDIRKISLDH----HEMTAIVN-STKSATAIDFVFRTGMIFWSD 521 (734)
Q Consensus 453 ~C~-~gy~~--~~~~~t~C~~~~-~~~~l~~~~--~~~I~~i~l~~----~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d 521 (734)
.-. ..|.. .......-.+.+ ....|||++ ...|+++.+++ .....++. .+..|.+||+|+..+.|||+|
T Consensus 98 ~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d 177 (400)
T 3p5b_L 98 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 177 (400)
T ss_dssp CTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred ccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE
Confidence 000 00110 000000001111 234677775 46799999887 34555555 788999999999999999999
Q ss_pred eCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC
Q psy8875 522 ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600 (734)
Q Consensus 522 ~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~ 600 (734)
...++|.+++++ |..+++++...+..|.+||||+..++|||||++ .++|++++++|+.+++++...+..|+|||||+.
T Consensus 178 ~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~ 256 (400)
T 3p5b_L 178 SVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL 256 (400)
T ss_dssp TTTTEEEEECTT-TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred CCCCeEEEEeCC-CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeC
Confidence 999999999999 566777777788999999999999999999987 489999999999999999888999999999999
Q ss_pred CCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEEEEcCCCC
Q psy8875 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRLVLYSPQT 677 (734)
Q Consensus 601 ~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~i~~~~~~ 677 (734)
.++|||+|+. ..+|++++++|+.+++++.. .+.+|.||+++ +++|||+|+.+++|++++ .+|+.+++|.. .
T Consensus 257 ~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~---~ 330 (400)
T 3p5b_L 257 SGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE---N 330 (400)
T ss_dssp TTEEEEEETT-TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEEC---S
T ss_pred CCEEEEEECC-CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEec---C
Confidence 9999999975 58999999999999988874 47889999985 889999999999999999 78988888763 4
Q ss_pred CCCCeEEEEECC
Q psy8875 678 LSHPFSISTFED 689 (734)
Q Consensus 678 ~~~P~gl~v~~~ 689 (734)
+.+|++|+++..
T Consensus 331 ~~~p~~i~v~~~ 342 (400)
T 3p5b_L 331 LLSPEDMVLFHN 342 (400)
T ss_dssp CSCEEEEEEESG
T ss_pred CCCCceEEEEee
Confidence 678999999764
No 15
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=100.00 E-value=6.1e-36 Score=326.94 Aligned_cols=302 Identities=25% Similarity=0.471 Sum_probs=216.2
Q ss_pred CCCCCCC--CCCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceE
Q psy8875 375 DCPLMQD--EDPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFK 451 (734)
Q Consensus 375 ~C~~g~d--~~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~ 451 (734)
.|++||. .++..| ++|||. .++.|++.|+|++++|+|.|++||.|.+++++|+.+++ ... .+..+...-++
T Consensus 27 ~C~~G~~l~~~~~~C~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~----l~~~~~~~I~~ 100 (386)
T 3v65_B 27 TCHTGYRLTEDGRTCQDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPV----LLFANRIDIRQ 100 (386)
T ss_dssp --------------------------CCTTEEC-----CCEECCTTEEECTTSSCEEECSS-CCE----EEEECBSCEEE
T ss_pred ECCCCceECCCCCccCccceeC-CcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccc-cce----eEeecCcccee
Confidence 6777774 334568 899997 45789999999999999999999999999999987764 211 01111111010
Q ss_pred EecC-CCeeeCCCCCccccc--cc-ccceeeeee--ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCC
Q psy8875 452 CECV-AGYIKDPHHPTQCKA--AE-GHASLLFAR--KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISE 524 (734)
Q Consensus 452 C~C~-~gy~~~~~~~t~C~~--~~-~~~~l~~~~--~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~ 524 (734)
-.-. ..+.........-.+ .+ ....|||++ .+.|+++.+++...+.++. .+..|.+|++|+..+.|||+|...
T Consensus 101 i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~ 180 (386)
T 3v65_B 101 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180 (386)
T ss_dssp ECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT
T ss_pred eccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC
Confidence 0000 000000000000111 11 234577765 4679999999887766654 677899999999999999999999
Q ss_pred CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCe
Q psy8875 525 KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW 603 (734)
Q Consensus 525 ~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~ 603 (734)
++|.+++++ |..+++++...+..|.+||||+..++|||+|+.. ++|++++++|+.+++++...+..|+|||||+..++
T Consensus 181 ~~I~~~~~d-g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 181 SRIEVANLD-GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR 259 (386)
T ss_dssp TEEEECBTT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred CeEEEEeCC-CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCE
Confidence 999999998 5666677777889999999999999999999997 99999999999999999888999999999999999
Q ss_pred EEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEEEEcCCCCCCCCe
Q psy8875 604 MYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRLVLYSPQTLSHPF 682 (734)
Q Consensus 604 LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~i~~~~~~~~~P~ 682 (734)
|||+|+. ..+|++++++|+.+++++...+.+|.||+|+ +++|||+|+..++|.+++ .+|+.+++|.. .+..|+
T Consensus 260 lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~---~~~~p~ 333 (386)
T 3v65_B 260 MYWVDAK-HHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRN---KLHFPM 333 (386)
T ss_dssp EEEEETT-TTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC---SCSCCC
T ss_pred EEEEECC-CCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcceEEEcc---CCCCCc
Confidence 9999976 4799999999999998888889999999995 789999999999999999 78988888863 478899
Q ss_pred EEEEECC
Q psy8875 683 SISTFED 689 (734)
Q Consensus 683 gl~v~~~ 689 (734)
+|+++..
T Consensus 334 gi~v~~~ 340 (386)
T 3v65_B 334 DIHTLHP 340 (386)
T ss_dssp CEEEESG
T ss_pred eEEEEch
Confidence 9999753
No 16
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=100.00 E-value=6.9e-35 Score=314.17 Aligned_cols=287 Identities=25% Similarity=0.472 Sum_probs=219.6
Q ss_pred ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCC--eeeCCCCCc
Q psy8875 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAG--YIKDPHHPT 466 (734)
Q Consensus 389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~g--y~~~~~~~t 466 (734)
+|||. .++.|+|.|+|++++|+|.|++||.|.+++++|++.++ ... .+..+...-++-. ..| +........
T Consensus 1 i~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~----ll~~~~~~I~~i~-~~g~~~~~~~~~~~ 73 (349)
T 3v64_C 1 VNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPV----LLFANRIDIRQVL-PHRSEYTLLLNNLE 73 (349)
T ss_dssp ---------CCSSEECCC---CCEECCTTEEECTTSSCEEESSS-CCE----EEEECBSCEEEEC-TTSCCEEEEECSCS
T ss_pred CcccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCccccccc-Cce----eEeecccceEEEe-CCCCeeEEeecCCC
Confidence 57898 67899999999999999999999999999999987765 211 0111111111100 001 111000000
Q ss_pred cccc--cc-ccceeeeee--ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE
Q psy8875 467 QCKA--AE-GHASLLFAR--KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV 540 (734)
Q Consensus 467 ~C~~--~~-~~~~l~~~~--~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~ 540 (734)
.-.+ .+ ....|||++ .+.|+++.+++...+.++. .+..|.+|++|+..+.|||+|...++|++++++ |..+++
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~ 152 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKV 152 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEE
Confidence 0111 11 234677765 5679999999887766654 577899999999999999999999999999999 566677
Q ss_pred EEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEec
Q psy8875 541 VIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAG 619 (734)
Q Consensus 541 ~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ 619 (734)
++...+..|.+||||+..+.|||+|+.. ++|++++++|+.+++++...+..|+|||||+..++|||+|++ ..+|++++
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~ 231 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERAN 231 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-CCEEEEEe
Confidence 7767889999999999999999999998 999999999999998887889999999999999999999976 47999999
Q ss_pred cCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875 620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRLVLYSPQTLSHPFSISTFED 689 (734)
Q Consensus 620 ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~i~~~~~~~~~P~gl~v~~~ 689 (734)
++|+.+++++...+.+|.||+|+ +++|||+|+..++|.+++ .+|+.++++.. .+..|++|+++..
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~---~~~~p~gi~v~~~ 297 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRN---KLHFPMDIHTLHP 297 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC---SCSCCCCEEEECG
T ss_pred CCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCccEEecc---CCCCCceEEEEcc
Confidence 99999998888889999999995 789999999999999999 78998888863 4788999999753
No 17
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=100.00 E-value=7.3e-31 Score=271.70 Aligned_cols=249 Identities=30% Similarity=0.603 Sum_probs=213.8
Q ss_pred ceeeeeeccceEEeecCCCceE-----EEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC
Q psy8875 475 ASLLFARKHDIRKISLDHHEMT-----AIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI 548 (734)
Q Consensus 475 ~~l~~~~~~~I~~i~l~~~~~~-----~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~ 548 (734)
++|+|++.+.|+++++++.... .++ .....|.+|++|+..+.|||+|...++|+++++++ .....++...+..
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCCC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCCC
Confidence 5789999999999999987542 222 23567899999998999999999999999999984 4445555556789
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEE
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNM 627 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~ 627 (734)
|.+||+|+.+++|||++...++|.+++++|...++++...+..|++|++||..++|||++++. .++|+++++||+.+++
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 999999999999999999999999999999888888777778999999999999999999763 4799999999998888
Q ss_pred EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEecc
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~ 707 (734)
+....+..|+||++|+.+++|||+|...++|.+++++|..++.++. .+.+|++|++++++|||+++.+++|+++++.
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 7777788999999998899999999999999999999988777764 3678999999999999999999999999999
Q ss_pred CCCceEEEecccccCCCccCC
Q psy8875 708 TGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 708 ~G~~~~~l~~~~~l~~P~~i~ 728 (734)
+|+.++.+... ....|.+|+
T Consensus 238 ~g~~~~~i~~g-~~~~p~gi~ 257 (267)
T 1npe_A 238 ISKEMDTFHPH-KQTRLYGIT 257 (267)
T ss_dssp TTEEEEEECCS-SCCCCCCEE
T ss_pred CCCceEEEccc-cccccceee
Confidence 99988887643 234577764
No 18
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.95 E-value=2.3e-26 Score=243.87 Aligned_cols=208 Identities=24% Similarity=0.448 Sum_probs=181.5
Q ss_pred ceeeeee--ccceEEeecCCCce--EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875 475 ASLLFAR--KHDIRKISLDHHEM--TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD 550 (734)
Q Consensus 475 ~~l~~~~--~~~I~~i~l~~~~~--~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~ 550 (734)
..|||++ ...|+++.+++... ..+...+..|.+|++|+..+.|||+|...++|.+++++ |..+++++...+..|.
T Consensus 47 ~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~~~~P~ 125 (318)
T 3sov_A 47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPR 125 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEEEeCCCCCcc
Confidence 4677765 46799999988753 34445678999999999999999999999999999998 5666677767889999
Q ss_pred ceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI 629 (734)
Q Consensus 551 glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv 629 (734)
+||||+..++|||+|+. ..+|++++++|+.+++++...+..|+|||||+..++|||+|+. ..+|+++++||+.+++++
T Consensus 126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEE
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC-CCEEEEEcCCCCceEEEe
Confidence 99999999999999986 6899999999999999988889999999999999999999975 589999999999999988
Q ss_pred EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec-CCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875 630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY-NGGNRRLVLYSPQTLSHPFSISTFED 689 (734)
Q Consensus 630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~i~~~~~~~~~P~gl~v~~~ 689 (734)
...+.+|.||++| ++.|||+|+..++|.+++. +|+.+++|.. .+.+|++|++++.
T Consensus 205 ~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~---~~~~P~~i~v~~~ 260 (318)
T 3sov_A 205 KGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHS---DIFSPMDIHAFSQ 260 (318)
T ss_dssp CSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC---CCSSCCCEEEECG
T ss_pred cCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEEeC---CCCCCcEEEEecc
Confidence 7789999999997 7899999999999999998 6888777763 3678999999754
No 19
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.94 E-value=7.8e-25 Score=232.40 Aligned_cols=206 Identities=20% Similarity=0.355 Sum_probs=171.0
Q ss_pred eEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC----CceEEEEcCCCCC
Q psy8875 516 MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG----TMRKVLVRSYLDE 591 (734)
Q Consensus 516 ~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG----~~~~~l~~~~l~~ 591 (734)
.|+|+. ...|++++++++. .+.++. .+..|.+|++|+.+++|||+|...++|++++++| +..+.++...+..
T Consensus 3 ~ll~~~--~~~I~~i~~~~~~-~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTN--RHEVRKMTLDRSE-YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEEC--BSSEEEEETTSCC-CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEEC--CCeEEEEECCCcc-eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 466664 4679999998543 344443 6889999999999999999999999999999998 5556666667889
Q ss_pred ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-CeEEEEecCCCceEE
Q psy8875 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGNRRL 670 (734)
Q Consensus 592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~ 670 (734)
|.+||||+..+.|||+|.. ..+|.+++++|..+++++...+..|++|++|+.+++|||+|+.. ++|++++++|+.+++
T Consensus 79 p~glavd~~~~~ly~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSV-LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCEEEEETTTTEEEEEETT-TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cCEEEEeecCCeEEEEECC-CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 9999999999999999975 58999999999998888887889999999999999999999876 899999999999988
Q ss_pred EEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEec-ccccCCCccCCC
Q psy8875 671 VLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITG-VHQTHEPLNSPG 729 (734)
Q Consensus 671 i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~-~~~l~~P~~i~~ 729 (734)
++.. .+..|.||+++ +++|||+|+.+++|.+++. +|+.++++.. ...+.+|.+|+.
T Consensus 158 ~~~~--~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~-dg~~~~~~~~~~~~~~~P~giav 216 (316)
T 1ijq_A 158 LVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAV 216 (316)
T ss_dssp EECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEE
T ss_pred EEEC--CCCCceEEEEeccCCEEEEEECCCCeEEEEec-CCCceEEEeecCCccCCcEEEEE
Confidence 8753 47899999996 7899999999999999986 4666666643 345788988863
No 20
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.92 E-value=1.9e-23 Score=219.15 Aligned_cols=212 Identities=9% Similarity=0.171 Sum_probs=172.4
Q ss_pred eeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEE---eCCCcEEEEecCCCCceEEEEeCCCCCccceeeec
Q psy8875 480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSD---ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW 556 (734)
Q Consensus 480 ~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d---~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~ 556 (734)
++++.|+++.+++.+.+.|...... ++.+..++|||++ .....|++++++ |+..+.+..... ++++|
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~-----~~~~~ 154 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL-----FTCNT 154 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC-----CCSEE
T ss_pred cCCCeEEEEeCCCCcceEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc-----eEeeE
Confidence 3467899999999998888765433 3344589999999 567789999999 566666655322 67899
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
.+++|||++.+..+|++++++|..++.|+.. +..++++|..++|||++|+...+|++++|||+.+++|+...+ |
T Consensus 155 ~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~ 228 (302)
T 3s25_A 155 SDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E 228 (302)
T ss_dssp ETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E
T ss_pred ECCEEEEEeCCCceEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c
Confidence 9999999999889999999999998887643 445667789999999999766899999999999988865544 3
Q ss_pred eeEEEecCCCeEEEE-eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 637 NGLTLDLVQRRLYWV-DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 637 ~glavD~~~~~LYw~-D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
.+|+.+++|||+ +.....|+++++||+.+++|... ...+|++++++|||+||.+++|++++ .+|+..++|
T Consensus 229 ---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-----~~~~i~i~~d~Iy~td~~~~~i~~~~-~dGs~~~~l 299 (302)
T 3s25_A 229 ---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-----EFCNINVTSQYVYFTDFVSNKEYCTS-TQNPDTIKA 299 (302)
T ss_dssp ---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----CEEEEEECSSEEEEEETTTCCEEEEE-SSSCCSCEE
T ss_pred ---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----ccceEEEeCCEEEEEECCCCeEEEEE-CCCCCceEe
Confidence 377789999997 66678999999999999988753 24589999999999999999999985 678776655
Q ss_pred e
Q psy8875 716 T 716 (734)
Q Consensus 716 ~ 716 (734)
.
T Consensus 300 ~ 300 (302)
T 3s25_A 300 L 300 (302)
T ss_dssp C
T ss_pred c
Confidence 3
No 21
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.91 E-value=8.7e-23 Score=210.88 Aligned_cols=206 Identities=23% Similarity=0.422 Sum_probs=168.4
Q ss_pred CeEEEEEeCCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCC
Q psy8875 515 GMIFWSDISEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590 (734)
Q Consensus 515 ~~lyw~d~~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~ 590 (734)
..|||++. +.|++++++++... ..++......|.+|++|+.+++|||+|...++|.+++++|.....++...+.
T Consensus 2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC--CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 46888874 58999999854322 2233323467999999999999999999999999999999887777766778
Q ss_pred CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC--CCeEEEEecCCCce
Q psy8875 591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNR 668 (734)
Q Consensus 591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~ 668 (734)
.|.+|++|+..++|||+|.+ ..+|.+++++|..+++++...+..|++|++|+.+++|||++.. .++|++++++|+.+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~-~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQ-LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CccEEEEEecCCeEEEEECC-CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 99999999999999999975 4799999999998887877777899999999889999999987 67999999999988
Q ss_pred EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 669 RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 669 ~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
+++.. ..+..|.+|++. +++|||+|+.+++|.+++..++ .++.+.. .+.+|.+++
T Consensus 159 ~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~--~~~~P~gi~ 215 (267)
T 1npe_A 159 RILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLE--GLQYPFAVT 215 (267)
T ss_dssp EEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEE--CCCSEEEEE
T ss_pred EEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEec--CCCCceEEE
Confidence 87764 246789999995 5799999999999999987543 3333332 366787775
No 22
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.84 E-value=5.1e-19 Score=195.50 Aligned_cols=227 Identities=16% Similarity=0.196 Sum_probs=174.0
Q ss_pred ceeeeeec-cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 475 ASLLFARK-HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 475 ~~l~~~~~-~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
..||+++. +.|+++++....+..++..+..|.+|++++..+ |||+|... ..|+++...++......+. .+..|
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P 230 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGA 230 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSB
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCC
Confidence 46777766 889999997777877877888999999998666 99999743 2366666553333222333 57889
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--- 624 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--- 624 (734)
.+||+|+..++|||++...++|++++++ |...+.++ ......+.+|++||..++|||+|.+ .++|+++++++..
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~-~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG-KHCIYRVDYNRETGKL 309 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT-TTEEEEEEBCTTTCCB
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC-CCEEEEEeCCCCCccc
Confidence 9999998899999999999999999998 55523333 3445567789999988889999975 5899999887532
Q ss_pred --eEEEEEc--------------CCCCceeEEE---------ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC-----
Q psy8875 625 --RNMVIVS--------------DIKWPNGLTL---------DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS----- 674 (734)
Q Consensus 625 --~~~lv~~--------------~l~~P~glav---------D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~----- 674 (734)
..++... .+.+|.||++ | ..+.|||+|+.+++|.+++.+|. ..+++..
T Consensus 310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~G~-v~t~~G~g~~~~ 387 (433)
T 4hw6_A 310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPEGR-VTTYAGRGNSRE 387 (433)
T ss_dssp CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTTSE-EEEEECCCTTCS
T ss_pred CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCCCC-EEEEEeCCCCCc
Confidence 1233322 3678999999 5 78899999999999999998883 3344321
Q ss_pred ----------CCCCCCCeEEEEE--CCEEEEEeCCCCceEEEec
Q psy8875 675 ----------PQTLSHPFSISTF--EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 675 ----------~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~ 706 (734)
...+.+|.+|++. ++.||++|+++++|+++.+
T Consensus 388 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 388 WGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp SCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 1136789999998 7999999999999998864
No 23
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=5e-19 Score=195.55 Aligned_cols=231 Identities=13% Similarity=0.168 Sum_probs=177.3
Q ss_pred cceeeeeec-cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCC
Q psy8875 474 HASLLFARK-HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTI 548 (734)
Q Consensus 474 ~~~l~~~~~-~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~ 548 (734)
...||+++. +.|+++++++..+..+......|.+|++++..++|||+|...+ .|+.+..+++......+. .+..
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~ 227 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQN 227 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSS
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCC
Confidence 346777766 7899999998888888888889999999998888999998543 466666663332222222 4678
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--- 624 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--- 624 (734)
|.+||+|+..++|||+|...++|+++++++.....+. ......|++|++||..++|||++.. .++|++.+++|..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-~~~I~~~~~d~~~~~~ 306 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-QHYILRSDYDWKTKRL 306 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-CCEEEEEeCCcccccc
Confidence 9999999889999999999999999999987664443 3445689999999988889999975 5899999998752
Q ss_pred --eEEEEEc--------------CCCCce-eEEEec-------CCCeEEEEeCCCCeEEEEecCCCceEEEEcC------
Q psy8875 625 --RNMVIVS--------------DIKWPN-GLTLDL-------VQRRLYWVDAKLNEISSCDYNGGNRRLVLYS------ 674 (734)
Q Consensus 625 --~~~lv~~--------------~l~~P~-glavD~-------~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~------ 674 (734)
..++... .+..|. |++++. ..+.|||+|+.+++|.+++.+|.-..+.-..
T Consensus 307 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G 386 (430)
T 3tc9_A 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSG 386 (430)
T ss_dssp CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSS
T ss_pred cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCc
Confidence 2233321 267899 899963 4689999999999999999887433333210
Q ss_pred --------CCCCCCCeEEEEE--CCEEEEEeCCCCceEEEec
Q psy8875 675 --------PQTLSHPFSISTF--EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 675 --------~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~ 706 (734)
...+.+|.+|++. ++.||++|+++++|+++.+
T Consensus 387 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 0136689999997 5899999999999998864
No 24
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.83 E-value=7.1e-21 Score=156.84 Aligned_cols=78 Identities=41% Similarity=1.082 Sum_probs=72.4
Q ss_pred CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcc-cccccCcccC-CceeccCCCCeeeCCCCCCCCCCCCCCCCCcC
Q psy8875 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE-KKCQKRICGQ-EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK 128 (734)
Q Consensus 51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de-~~C~~~~C~~-~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~ 128 (734)
..+|+ +.+|+|.+|+|||..|+|||..||.||||| .+|....|.+ .+|+|.+ |+||+..|+|||..||.|||||.
T Consensus 2 ~~~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~--g~CI~~~~~CDG~~DC~DgSDE~ 78 (82)
T 2fyj_A 2 ARTCP-PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN--GRCININWRCDNDNDCGDNSDEA 78 (82)
T ss_dssp CSSSC-TTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTT--SCEEETTCBSSSSBCCSSSSSCS
T ss_pred CCCCC-CCceEeCCCCEEeccccCCCcccCCCccccccccccccCCCCCceECCC--CCeEcHHHccCCCCcCCCCcccc
Confidence 35788 899999999999999999999999999999 8998888965 8999987 68999999999999999999999
Q ss_pred CCC
Q psy8875 129 SCK 131 (734)
Q Consensus 129 ~C~ 131 (734)
+|.
T Consensus 79 ~C~ 81 (82)
T 2fyj_A 79 GCS 81 (82)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 25
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=6.2e-19 Score=194.81 Aligned_cols=208 Identities=13% Similarity=0.139 Sum_probs=162.4
Q ss_pred CCcceEEEeeec-cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCC----eEEEEe
Q psy8875 501 STKSATAIDFVF-RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKN----TIELAN 575 (734)
Q Consensus 501 ~~~~~~~i~~d~-~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~----~I~~~~ 575 (734)
.+..|.+|++|+ ..+.||++|.. ++|++++++++ ..+.++ ..+..|.+||+|+.++.|||++...+ .|.+..
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~-~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE-YVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT-EEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC-EEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 467899999998 58999999987 89999999843 333444 36788999999988778999998533 566677
Q ss_pred CCCCce--EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeEEEecCCCeEEEEe
Q psy8875 576 FEGTMR--KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 576 ldG~~~--~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~glavD~~~~~LYw~D 652 (734)
.+|... ..+. .+..|.+|++||..|+|||+|++ .++|+++++++.....+.. ....+|++|++|+.+++|||+|
T Consensus 212 ~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 RESGFKVITELT--KGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp GGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 777654 3333 47899999999989999999986 4799999999876644443 3457899999998888899999
Q ss_pred CCCCeEEEEecCCCc-----eEEEEcC------------CCCCCCCe-EEEEEC---------CEEEEEeCCCCceEEEe
Q psy8875 653 AKLNEISSCDYNGGN-----RRLVLYS------------PQTLSHPF-SISTFE---------DWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 653 ~~~~~I~~~~~dG~~-----~~~i~~~------------~~~~~~P~-gl~v~~---------~~lywtd~~~~~v~~~~ 705 (734)
...++|++++++|.. ..++... ...+.+|. +|++.+ +.|||+|+.+++|++++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 999999999999752 2333321 12467899 899853 69999999999999998
Q ss_pred ccCCCceEEE
Q psy8875 706 KFTGDNLTAI 715 (734)
Q Consensus 706 ~~~G~~~~~l 715 (734)
+ +|...+++
T Consensus 369 ~-~G~v~~~~ 377 (430)
T 3tc9_A 369 P-QGRVTTFA 377 (430)
T ss_dssp T-TSEEEEEE
T ss_pred C-CCcEEEEE
Confidence 4 67554444
No 26
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.82 E-value=4.8e-21 Score=156.53 Aligned_cols=75 Identities=48% Similarity=1.195 Sum_probs=70.9
Q ss_pred CCCCCCceecCCCceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCc--CCC
Q psy8875 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE--KSC 130 (734)
Q Consensus 53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de--~~C 130 (734)
+|+ +.+|+|.+|+||+..|+|||+.||.|||||.+|....|.+.+|+|.+ |+|||..|+|||..||.||+|| .+|
T Consensus 2 ~C~-~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~dgsDE~~~~C 78 (80)
T 2fcw_B 2 TCS-QAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWPQRC 78 (80)
T ss_dssp CCC-TTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTT--SCEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred CCC-CCccCCCCCCEEeeecccCCcccCCCcccccccccccCCceeeECCC--CCEEecccccCCCcCCCCCCCcCcccC
Confidence 687 89999999999999999999999999999999987789999999987 6899999999999999999999 666
No 27
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.81 E-value=6.8e-18 Score=185.42 Aligned_cols=228 Identities=19% Similarity=0.194 Sum_probs=173.3
Q ss_pred cceeeeeec--cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC-cEEEEecCCCCceEEE--E-eCCCC
Q psy8875 474 HASLLFARK--HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVV--I-EEDKT 547 (734)
Q Consensus 474 ~~~l~~~~~--~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~-~I~~~~l~~g~~~~~~--~-~~~~~ 547 (734)
...||+++. +.|+++++++.....+......+. +++++..+.|||++...+ .|++++..++.....+ + .....
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~ 219 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG 219 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence 345677664 689999998877777766666677 999998999999998655 8999998855432222 1 22457
Q ss_pred CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE----EcC-CCCCce-eEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875 548 IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL----VRS-YLDEPR-SLALNPIDGWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l----~~~-~l~~P~-~iavD~~~g~LYwtd~~~~~~I~~~~ld 621 (734)
.|.+||+|+..++||+++. .++|+++++++....++ ... ....|. +|++||..++|||+|.. .++|++.+++
T Consensus 220 ~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-~~~I~~~~~~ 297 (409)
T 3hrp_A 220 KIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-LSSVYKITPD 297 (409)
T ss_dssp CCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-TTEEEEECTT
T ss_pred CcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-CCEEEEEecC
Confidence 8999999988999999876 68999999987765554 211 123467 99999988999999965 5799999999
Q ss_pred CCceEEEEEcC--------------CCCceeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCC-----------
Q psy8875 622 GSHRNMVIVSD--------------IKWPNGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSP----------- 675 (734)
Q Consensus 622 G~~~~~lv~~~--------------l~~P~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~----------- 675 (734)
|.. .+++... +.+|+||++|+. ++||++|+ ..++|.++++......+++...
T Consensus 298 g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 298 GEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPL 375 (409)
T ss_dssp CCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTT
T ss_pred CCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChh
Confidence 973 3344332 678999999954 66999999 9999999995444445454320
Q ss_pred -CCCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875 676 -QTLSHPFSISTF-EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 676 -~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~ 706 (734)
..+.+|.+|++. ++.||++|+.+++|+++..
T Consensus 376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 126789999995 4999999999999998853
No 28
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.80 E-value=2.7e-18 Score=189.74 Aligned_cols=208 Identities=12% Similarity=0.087 Sum_probs=156.2
Q ss_pred CCcceEEEeeec--cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC----CeEEEE
Q psy8875 501 STKSATAIDFVF--RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK----NTIELA 574 (734)
Q Consensus 501 ~~~~~~~i~~d~--~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~----~~I~~~ 574 (734)
.+..|.+|++|+ ..+.|||+|.. ++|+++++.++.. +.++ ..+..|.+||+|+.++ |||++... ..|.+.
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v-~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYV-DIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEE-EEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEE-EEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 467899999998 47999999987 8999999864433 3333 3677899999997766 99999853 235555
Q ss_pred eCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEE-cCCCCceeEEEecCCCeEEEE
Q psy8875 575 NFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIV-SDIKWPNGLTLDLVQRRLYWV 651 (734)
Q Consensus 575 ~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~-~~l~~P~glavD~~~~~LYw~ 651 (734)
...+... ...+ ..+..|.+|++|+..|.|||+++. .++|++++++ |...+.++. ....++.+|++|+.+++|||+
T Consensus 213 ~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~-~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYH-HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTT-CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECC-CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 5554443 1222 257899999999989999999976 4799999998 554233333 345677899999888889999
Q ss_pred eCCCCeEEEEecCCCc-----eEEEEcC------------CCCCCCCeEEEE----------ECCEEEEEeCCCCceEEE
Q psy8875 652 DAKLNEISSCDYNGGN-----RRLVLYS------------PQTLSHPFSIST----------FEDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~-----~~~i~~~------------~~~~~~P~gl~v----------~~~~lywtd~~~~~v~~~ 704 (734)
|...++|+++++++.. ..+++.. ...+.+|.+|++ .++.|||+|+.+++|+++
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 9999999999988532 2334321 124678999999 467999999999999999
Q ss_pred eccCCCceEEE
Q psy8875 705 NKFTGDNLTAI 715 (734)
Q Consensus 705 ~~~~G~~~~~l 715 (734)
++ +|...+++
T Consensus 371 ~~-~G~v~t~~ 380 (433)
T 4hw6_A 371 TP-EGRVTTYA 380 (433)
T ss_dssp CT-TSEEEEEE
T ss_pred CC-CCCEEEEE
Confidence 86 67544444
No 29
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.78 E-value=1.5e-19 Score=148.94 Aligned_cols=75 Identities=48% Similarity=1.147 Sum_probs=70.4
Q ss_pred CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCc-CCCCCCCccc-ccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE-KSCKNRTCQA-SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de-~~C~~~~C~~-~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
.+|.+.+|+|.+ |+|||..|+|||..||.||||| .+|...+|.+ .+|+|.+|+||+..|+|||..||.|||||.+
T Consensus 3 ~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~ 79 (82)
T 2fyj_A 3 RTCPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAG 79 (82)
T ss_dssp SSSCTTEEETTS--SCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSC
T ss_pred CCCCCCceEeCC--CCEEeccccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccC
Confidence 468899999987 6899999999999999999999 8998889965 8999999999999999999999999999987
No 30
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=5.7e-17 Score=179.08 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=172.7
Q ss_pred ceeeeeec--cceEEeecCCCceEEEecC----CcceEEEee-------eccCCeEEEEEeCCC------cEEEEecCC-
Q psy8875 475 ASLLFARK--HDIRKISLDHHEMTAIVNS----TKSATAIDF-------VFRTGMIFWSDISEK------KIYKAPIDE- 534 (734)
Q Consensus 475 ~~l~~~~~--~~I~~i~l~~~~~~~l~~~----~~~~~~i~~-------d~~~~~lyw~d~~~~------~I~~~~l~~- 534 (734)
..||++.. +.|++|++....++.++.. +.+|.+|+| +...++||+++...+ .|+.+....
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~ 231 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence 34555543 6799999998888877653 347999999 887778999998752 367775442
Q ss_pred CCceE----EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-------CCce-------------EEEEcCCCC
Q psy8875 535 GSERT----VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-------GTMR-------------KVLVRSYLD 590 (734)
Q Consensus 535 g~~~~----~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-------G~~~-------------~~l~~~~l~ 590 (734)
|.... ..+. .+..|.+|++|+..++||+++...++|++++++ +... .++......
T Consensus 232 G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~ 310 (496)
T 3kya_A 232 GTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS 310 (496)
T ss_dssp SCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred Cceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence 22210 2222 467899999999999999999999999999987 3322 223334456
Q ss_pred CceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-----EEEEEc--------------CCCCce-eEEEec------C
Q psy8875 591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-----NMVIVS--------------DIKWPN-GLTLDL------V 644 (734)
Q Consensus 591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-----~~lv~~--------------~l~~P~-glavD~------~ 644 (734)
.|.+||++|..++||++|++ +++|+++++||... .+++.. .+..|. |+++|. .
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~-~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~ 389 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVIN-NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE 389 (496)
T ss_dssp CCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred CceEEEEcCCCCEEEEEeCC-CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence 89999999988889999975 58999999988652 333332 467899 888873 5
Q ss_pred CCeEEEEeCCCCeEEEEecCCCceEEEEcCC---------------------CCCCCCeEEEEEC--CEEEEEeCCCCce
Q psy8875 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSP---------------------QTLSHPFSISTFE--DWLYWSDWQQKAI 701 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~---------------------~~~~~P~gl~v~~--~~lywtd~~~~~v 701 (734)
.+.||++|+.+++|++++.+|. ..+++... ..+.+|.||++.. +.||++|..+++|
T Consensus 390 ~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI 468 (496)
T 3kya_A 390 EYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI 468 (496)
T ss_dssp CEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence 7899999999999999998884 44444220 1367899999974 8999999999999
Q ss_pred EEEeccC
Q psy8875 702 YKANKFT 708 (734)
Q Consensus 702 ~~~~~~~ 708 (734)
+++....
T Consensus 469 rki~~~~ 475 (496)
T 3kya_A 469 RTISMEQ 475 (496)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9997643
No 31
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.78 E-value=2.9e-20 Score=151.91 Aligned_cols=74 Identities=47% Similarity=1.106 Sum_probs=69.7
Q ss_pred cccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 93 ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 93 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
+|.+.+|+|.+ |+|||..|+|||..||.|||||.+|...+|...+|+|.+|+|||..|+|||..||.|||||..
T Consensus 2 ~C~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~ 75 (80)
T 2fcw_B 2 TCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 75 (80)
T ss_dssp CCCTTEEECTT--SCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred CCCCCccCCCC--CCEEeeecccCCcccCCCcccccccccccCCceeeECCCCCEEecccccCCCcCCCCCCCcCc
Confidence 58889999987 689999999999999999999999977789999999999999999999999999999999954
No 32
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.78 E-value=2.4e-17 Score=181.08 Aligned_cols=208 Identities=15% Similarity=0.159 Sum_probs=160.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCC-eEEEEeCCCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKN-TIELANFEGT 579 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~-~I~~~~ldG~ 579 (734)
.+..|.+|++++ .+.|||+|...++|++++++++.. ..+.. ....|. |++++.++.|||++...+ +|++++.++.
T Consensus 129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~-~~~~~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKV-TTVHP-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEE-EEEEE-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEE-EEeec-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 467899999995 678999999889999999985433 33343 355677 999999999999998654 9999998876
Q ss_pred ceEEEE----cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE----EcCC-CCce-eEEEecCCCeEE
Q psy8875 580 MRKVLV----RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI----VSDI-KWPN-GLTLDLVQRRLY 649 (734)
Q Consensus 580 ~~~~l~----~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv----~~~l-~~P~-glavD~~~~~LY 649 (734)
.....+ ......|.+|++||..|+||+++. .++|++.++++....++. .... ..|. +|++|+.+++||
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~--~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS--NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT--TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC--CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 543333 335688999999999999999884 478999999877655441 1111 2356 999998889999
Q ss_pred EEeCCCCeEEEEecCCCceEEEEcCC------------CCCCCCeEEEEE-CCEEEEEeC-CCCceEEEeccCCCceEEE
Q psy8875 650 WVDAKLNEISSCDYNGGNRRLVLYSP------------QTLSHPFSISTF-EDWLYWSDW-QQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 650 w~D~~~~~I~~~~~dG~~~~~i~~~~------------~~~~~P~gl~v~-~~~lywtd~-~~~~v~~~~~~~G~~~~~l 715 (734)
|+|...++|++++++|. ..+++... ..+.+|.+|++. ++.||++|+ .+++|++++..+|...+++
T Consensus 283 v~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 99999999999999987 33343221 126789999995 578999999 9999999986677654444
No 33
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=1.5e-16 Score=169.32 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=167.8
Q ss_pred CCcceEEEeeeccCCeEEEEEeCC------------------------CcEEEEecCCCCceEEEEeCCCCCccceeeec
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISE------------------------KKIYKAPIDEGSERTVVIEEDKTIADGLAVDW 556 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~------------------------~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~ 556 (734)
.+..+.+|++++ .+.||+++... +.|++++.+.|..........+..|.+||+|+
T Consensus 22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 467889999997 57899999876 36888887655543333234567899999995
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCC--ceEEEE--------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGT--MRKVLV--------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~--~~~~l~--------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
.++||+++...++|.+.+++|. ....+. ...+..|.+|++||..|.||++|.....+|.+.+.+|....
T Consensus 101 -~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~ 179 (329)
T 3fvz_A 101 -DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVT 179 (329)
T ss_dssp -TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEE
T ss_pred -CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEE
Confidence 5669999999999999999997 344443 24567899999999889999999523589999999998766
Q ss_pred EEEE---------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCE------
Q psy8875 627 MVIV---------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDW------ 690 (734)
Q Consensus 627 ~lv~---------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~------ 690 (734)
.+.. ..+..|.+|++|+.+++||++|...++|.+++++ |+..+.+.. ......|+++++..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCC
Confidence 5532 2356799999998779999999999999999998 766665532 2233456666664444
Q ss_pred -EEEEeCCCCceEEEeccCCCceEEEec-ccccCCCccCC
Q psy8875 691 -LYWSDWQQKAIYKANKFTGDNLTAITG-VHQTHEPLNSP 728 (734)
Q Consensus 691 -lywtd~~~~~v~~~~~~~G~~~~~l~~-~~~l~~P~~i~ 728 (734)
+|+++....+|+.++..+|+.+..+.. ...+..|.+|+
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV 298 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence 455555666888998888888777642 23466777764
No 34
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.75 E-value=1.7e-16 Score=166.17 Aligned_cols=217 Identities=14% Similarity=0.285 Sum_probs=164.6
Q ss_pred ceeeeee---ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC-------------CcEEEEecCCCCce
Q psy8875 475 ASLLFAR---KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE-------------KKIYKAPIDEGSER 538 (734)
Q Consensus 475 ~~l~~~~---~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~-------------~~I~~~~l~~g~~~ 538 (734)
..++|++ ...|+++.++|.+.+.|.... +..|. +..+.||+++... ..|++++++ |+.+
T Consensus 26 ~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~~~i~--~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d-g~~~ 100 (302)
T 3s25_A 26 GEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--AMYIN--ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN-GHGS 100 (302)
T ss_dssp TEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--EEEEE--ECSSEEEEEEECC------CCSSCCSEEEEEEETT-SCCC
T ss_pred CEEEEEeCCCCceEEEEcCCCCCCEEccCCc--eeeEE--EcCCEEEEEECCCCcccccceeccCCCeEEEEeCC-CCcc
Confidence 4577765 567999999999988886542 33443 4489999997653 579999999 4555
Q ss_pred EEEEeCCCCCccceeeeccCCcEEEEe---CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceE
Q psy8875 539 TVVIEEDKTIADGLAVDWIYSHIYWTD---AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKI 615 (734)
Q Consensus 539 ~~~~~~~~~~p~glAvD~~~~~lY~td---~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I 615 (734)
+.+.. .. +.++.+..+.|||++ .....|++++++|+.++.|..... ++++|..+.|||++.+ .+.|
T Consensus 101 ~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g-~~~I 169 (302)
T 3s25_A 101 TVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPK-NGQL 169 (302)
T ss_dssp EEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEECTT-TCCE
T ss_pred eEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCC-CceE
Confidence 55543 22 334555689999999 567899999999999888886543 4568889999999974 5899
Q ss_pred EEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEE
Q psy8875 616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS 694 (734)
Q Consensus 616 ~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt 694 (734)
++++++|+.+++|+.. +..+++.|.++.|||+++.. .+|++++++|+++++|... .+ | .+++.+++|||+
T Consensus 170 y~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~-~~~~~g~~Iy~~ 240 (302)
T 3s25_A 170 YRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--E-HYNVYGSLIFYQ 240 (302)
T ss_dssp EEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--E-EEEEETTEEEEE
T ss_pred EEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--c-eEEECCCEEEEE
Confidence 9999999998877543 33345667899999999754 5899999999999887642 23 3 388899999997
Q ss_pred -eCCCCceEEEeccCCCceEEEec
Q psy8875 695 -DWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 695 -d~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
+.....|++++. +|..++.|..
T Consensus 241 ~~~~~~~i~~~~~-DG~~r~~l~~ 263 (302)
T 3s25_A 241 RGGDNPALCVVKN-DGTGFKELAK 263 (302)
T ss_dssp ECSSSCEEEEEET-TSCCCEEEEE
T ss_pred ECCCCcEEEEEEC-CCCccEEeeC
Confidence 555678888864 7777777654
No 35
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=7e-17 Score=178.34 Aligned_cols=210 Identities=11% Similarity=0.149 Sum_probs=158.0
Q ss_pred CCcceEEEeeec-cCCeEEEEEeCCCcEEEEecCCCCceEEEEeC---CCCCccceee-------eccCCcEEEEeCCCC
Q psy8875 501 STKSATAIDFVF-RTGMIFWSDISEKKIYKAPIDEGSERTVVIEE---DKTIADGLAV-------DWIYSHIYWTDAHKN 569 (734)
Q Consensus 501 ~~~~~~~i~~d~-~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~---~~~~p~glAv-------D~~~~~lY~td~~~~ 569 (734)
.+..|.+|++|+ ..++||+++...++|+++++.++ ..+.++.. .+..|.+||+ |..++.||+++...+
T Consensus 137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 456899999998 58999999988889999999844 34444432 2457999999 977778999999752
Q ss_pred ------eEEEEeC--CCCce-----EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--------CCc----
Q psy8875 570 ------TIELANF--EGTMR-----KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--------GSH---- 624 (734)
Q Consensus 570 ------~I~~~~l--dG~~~-----~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--------G~~---- 624 (734)
.|.+++. +|... ..+. .+.+|.+|++||..++||+++++ .++|++.+++ |..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~-~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETT-TTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECC-CCEEEEEecccccccccCceeeccc
Confidence 3666643 33442 2333 46799999999999999999986 4789999987 332
Q ss_pred -------eEEEE-EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce-----EEEEcC------------CCCCC
Q psy8875 625 -------RNMVI-VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-----RLVLYS------------PQTLS 679 (734)
Q Consensus 625 -------~~~lv-~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-----~~i~~~------------~~~~~ 679 (734)
.+.++ .....+|.+|++|+.++.||++|+..++|+++++++... .+++.. ...+.
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 12333 234578999999988888999999999999999988642 344432 12567
Q ss_pred CCe-EEEEE--------CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 680 HPF-SISTF--------EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 680 ~P~-gl~v~--------~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+|. ++++. ++.||++|+.+++|+++++ +|...+++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~Tia 416 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYA 416 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEe
Confidence 899 78885 5799999999999999984 67544443
No 36
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=1.8e-15 Score=160.94 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=158.8
Q ss_pred ceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC-ceEEEE--------eCCCCCccce
Q psy8875 484 DIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS-ERTVVI--------EEDKTIADGL 552 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~-~~~~~~--------~~~~~~p~gl 552 (734)
.|++++.+...+.... ..+..|.+|++++ .+.||+++...++|+++++++.. ....+. ...+..|.+|
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 4777776543433322 2356899999996 56699999999999999987432 222221 2345689999
Q ss_pred eeeccCCcEEEEeC-CCCeEEEEeCCCCceEEEEc---------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-
Q psy8875 553 AVDWIYSHIYWTDA-HKNTIELANFEGTMRKVLVR---------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD- 621 (734)
Q Consensus 553 AvD~~~~~lY~td~-~~~~I~~~~ldG~~~~~l~~---------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld- 621 (734)
|+|+..++||+++. ..++|.+.+.+|.....+.. ..+..|.+|++|+..+.||+++++ ..+|.+.+++
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-~~~I~~~~~~~ 227 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-NGRIQCFKTDT 227 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-TTEEEEEETTT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-CCEEEEEECCC
Confidence 99987899999996 78999999999987776642 235679999999988999999976 4799999998
Q ss_pred CCceEEEEEc-CCCCceeEEEec-----CCCeEEEEeCCCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEE-CCEEEE
Q psy8875 622 GSHRNMVIVS-DIKWPNGLTLDL-----VQRRLYWVDAKLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTF-EDWLYW 693 (734)
Q Consensus 622 G~~~~~lv~~-~l~~P~glavD~-----~~~~LYw~D~~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~-~~~lyw 693 (734)
|.....+... ....|.++++.+ ..+++|+++....+|..+++... ...++......+..|.+|++. .+.||+
T Consensus 228 G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 228 KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence 7655544322 123455555543 23445555566678999996544 344332223457789999994 569999
Q ss_pred EeCCCCceEEEecc
Q psy8875 694 SDWQQKAIYKANKF 707 (734)
Q Consensus 694 td~~~~~v~~~~~~ 707 (734)
+++.+++|++++..
T Consensus 308 ad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 308 GDAHTNTVWKFTLT 321 (329)
T ss_dssp EESSSCCEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 99999999998753
No 37
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=2.5e-16 Score=161.55 Aligned_cols=226 Identities=16% Similarity=0.270 Sum_probs=164.1
Q ss_pred eeee-e--eccceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 476 SLLF-A--RKHDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 476 ~l~~-~--~~~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
.+++ + ....|++++..+.....+ ......|.+|++++ .+.||+++. .+.|+++++++ .....+....+..|.+
T Consensus 36 ~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~-~~~~~~~~~~~~~p~~ 112 (270)
T 1rwi_B 36 NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGS-NNQTVLPFDGLNYPEG 112 (270)
T ss_dssp CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTC-SCCEECCCCSCSSEEE
T ss_pred CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCC-ceEeeeecCCcCCCcc
Confidence 3555 3 345687777655443332 23446789999997 466999998 78999999874 3333332235578999
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
|++|+ .++||+++...++|.+.+.............+..|.+|++|+ .|.||+++.+ ...|.+.++++.........
T Consensus 113 i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~~~~~~~~~~ 189 (270)
T 1rwi_B 113 LAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLPFT 189 (270)
T ss_dssp EEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGG-GTEEEEECTTTCCEEECCCS
T ss_pred eEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECC-CCEEEEEecCCCceEeeccc
Confidence 99996 567999998888999997654444333334567899999998 5679999964 47899999988765544445
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.+..|.+|++|+ .++||+++...++|.+++.+|.....+.. ..+..|.+|++. .+.||++++++++|.++++...+
T Consensus 190 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 190 DITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCC--CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeecc--CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 567899999995 45999999999999999998876654322 235789999995 57899999999999988765433
No 38
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.70 E-value=9.6e-16 Score=162.47 Aligned_cols=210 Identities=10% Similarity=0.134 Sum_probs=156.1
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC------------------CCCCccceeeeccCCcEE
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE------------------DKTIADGLAVDWIYSHIY 562 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~------------------~~~~p~glAvD~~~~~lY 562 (734)
.+..|.+|++++. +.+||++...++|++++.+++....+.... ....|.+|++|+..++||
T Consensus 17 ~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 17 PSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp SSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred ccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 4678999999974 778889988999999988743333222211 123689999997678999
Q ss_pred EEeCCCCeEEEEeCCCCceEEEEc----CCCCCceeEEEeCCCCeEEEEecCC----------------CceEEEeccCC
Q psy8875 563 WTDAHKNTIELANFEGTMRKVLVR----SYLDEPRSLALNPIDGWMYWSDWGQ----------------NAKIERAGMDG 622 (734)
Q Consensus 563 ~td~~~~~I~~~~ldG~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~~----------------~~~I~~~~ldG 622 (734)
+++.. +.|.++++++...+++.. ..+..|++|++|+..|.||+++.+. .++|++.+.++
T Consensus 96 v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 99986 458888888655555442 2356799999998568999999652 26799988876
Q ss_pred CceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC---ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCC-
Q psy8875 623 SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG---NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQ- 697 (734)
Q Consensus 623 ~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~---~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~- 697 (734)
...+++. ..+..|+||++++.+++||++|...++|+++++++. ..+++.. ... |.+|+++ +++||++++.
T Consensus 175 ~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 175 KETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp TEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEE
T ss_pred CEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCc
Confidence 5544443 457889999999878889999999999999999873 3444443 123 9999995 5789999987
Q ss_pred ---------CCceEEEeccCCCceEEEecc
Q psy8875 698 ---------QKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 698 ---------~~~v~~~~~~~G~~~~~l~~~ 718 (734)
.+.|+++++ +|+.+..+...
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 577999987 57777777543
No 39
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=4.4e-15 Score=153.96 Aligned_cols=220 Identities=13% Similarity=0.178 Sum_probs=167.0
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----CCCCCccceeeeccCCcEEEEeCC-CCeEEEE
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----EDKTIADGLAVDWIYSHIYWTDAH-KNTIELA 574 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~ 574 (734)
.+..|.+|++++ .+.||+++...++|++++++ +.....+.. ..+..|.+|+++...++||+++.. .++|.+.
T Consensus 28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 356899999996 46899999888999999887 443333221 124579999997678999999975 7899999
Q ss_pred eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeEEEecCCCeEEEEeC
Q psy8875 575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~glavD~~~~~LYw~D~ 653 (734)
+.+|.....+....+..|.+|++|+ .|.||+++.. ..+|.+.+.+|.....+.. ..+..|++|++|+ .++||+++.
T Consensus 106 d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~ 182 (286)
T 1q7f_A 106 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDN 182 (286)
T ss_dssp CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEG
T ss_pred CCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECC-CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEEC
Confidence 9888877666555667899999998 5689999864 4789999988876554432 3567899999995 678999999
Q ss_pred CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCC-ceEEEeccCCCceEEEecccccCCCccC
Q psy8875 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQK-AIYKANKFTGDNLTAITGVHQTHEPLNS 727 (734)
Q Consensus 654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~-~v~~~~~~~G~~~~~l~~~~~l~~P~~i 727 (734)
..++|.+++.+|.....+.. ...+..|.+|++. .++||++++..+ .|.++++ +|+.+..+........|..+
T Consensus 183 ~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 183 RAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 89999999998876655532 2335789999995 679999999886 8988875 67666666543223345454
No 40
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=1.1e-15 Score=156.63 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=155.9
Q ss_pred ceEEEeeeccCCeEEE-EEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 504 SATAIDFVFRTGMIFW-SDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw-~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
.|.+|++++ .+.||+ ++...+.|++++..++ ....+....+..|.+|++|+ .++||+++. .++|.+.+.++....
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe
Confidence 899999997 467999 8888889999887633 22222233456899999996 466999998 789999999988766
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD 662 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~ 662 (734)
.+....+..|.+|++|+ .|.||+++.+ .+.|.+.+.............+..|++|++|+ .++||+++...+.|.+++
T Consensus 101 ~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDT-QGAVYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp ECCCCSCSSEEEEEECT-TCCEEEEEGG-GTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred eeecCCcCCCcceEECC-CCCEEEEECC-CCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEe
Confidence 55445567899999998 6789999865 46888886544333333334566899999995 567999999889999999
Q ss_pred cCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 663 YNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 663 ~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
.++........ ..+..|.+|++. .++||++++..+.|+++++. +.....+.. ..+..|.+++
T Consensus 178 ~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~-~~~~~p~~i~ 240 (270)
T 1rwi_B 178 AESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-STTSTVLPF-TGLNTPLAVA 240 (270)
T ss_dssp TTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTT-CSCCEECCC-CSCSCEEEEE
T ss_pred cCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCC-CCcceeecc-CCCCCceeEE
Confidence 98876554332 235789999996 46999999999999999874 444333322 2245666653
No 41
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=2.7e-14 Score=148.25 Aligned_cols=243 Identities=14% Similarity=0.221 Sum_probs=176.8
Q ss_pred ceeeeee--ccceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875 475 ASLLFAR--KHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD 550 (734)
Q Consensus 475 ~~l~~~~--~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~ 550 (734)
..++++. ...|.+++.+ ..+..+. .....|.+|++++ .+.||+++...+.|++++.+ +......+......|.
T Consensus 31 g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~ 107 (300)
T 2qc5_A 31 GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPY 107 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCc
Confidence 3455554 3668888877 4444332 2346899999985 67899999878899999887 5544343333456799
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
+|++| ..++||+++...+.|.+.+.+|......+......|.+|++|+ .|.||+++.+ ...|.+.+.+|......+.
T Consensus 108 ~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~ 184 (300)
T 2qc5_A 108 GITEG-LNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ-NNSIGRITNTGKLEEYPLP 184 (300)
T ss_dssp EEEEC-STTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEECS
T ss_pred cceEC-CCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECC-CCCEEEEecC-CCeEEEECCCCcEEEeeCC
Confidence 99999 4688999998888999999997665444444577899999997 4679999864 4789999987765543333
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G 709 (734)
.....|.+|++|+ .++||+++...+.|.+++.+|......+. .....|.+|++. .++||+++...+.|.++++ +|
T Consensus 185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 260 (300)
T 2qc5_A 185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN 260 (300)
T ss_dssp STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence 4567899999995 67999999988999999997665443322 346789999995 6789999999899999987 56
Q ss_pred CceEEEecccccCCCccCC
Q psy8875 710 DNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 710 ~~~~~l~~~~~l~~P~~i~ 728 (734)
+... +........|.++.
T Consensus 261 ~~~~-~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 261 TIQE-YQLQTENAEPHGIT 278 (300)
T ss_dssp CEEE-EECCSTTCCCCCEE
T ss_pred cEEE-EECCccCCccceeE
Confidence 5443 32222345566654
No 42
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.68 E-value=2.6e-15 Score=157.24 Aligned_cols=208 Identities=15% Similarity=0.171 Sum_probs=157.9
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...-+.+..|++..+.|||+|...++|++++++++.. ..+ . ....|.+|++++. ++||++. ...|.++++++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~-~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-T-MDAPVSSVALRQS-GGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-E-CSSCEEEEEEBTT-SSEEEEE--TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-e-CCCceEEEEECCC-CCEEEEE--CCeEEEEECCCCc
Confidence 4557889999998999999999999999999985443 222 2 2357899999965 5588776 4689999987665
Q ss_pred eEEEEcC----CCCCceeEEEeCCCCeEEEEecC----------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCC
Q psy8875 581 RKVLVRS----YLDEPRSLALNPIDGWMYWSDWG----------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR 646 (734)
Q Consensus 581 ~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~----------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~ 646 (734)
.+.+... ....|++|++|+ .|+||+++.+ ....|++.+.+|.... +...+..|+||++++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEEECTTSC
T ss_pred EEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceEEcCCCC
Confidence 5555432 234689999998 5779998743 2358999988875443 335677899999998888
Q ss_pred eEEEEeCCCCeEEEEecC---CC--ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 647 RLYWVDAKLNEISSCDYN---GG--NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 647 ~LYw~D~~~~~I~~~~~d---G~--~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
.|||++...++|++++++ |. +++++.........|.+|+++ +++||++.+..++|+++++.+|+.+..+..
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 999999999999999875 32 234454332234579999994 689999999989999999988988777754
No 43
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=3.7e-14 Score=146.96 Aligned_cols=223 Identities=12% Similarity=0.099 Sum_probs=165.4
Q ss_pred eeeeee--ccceEEeecCCCceEEEec------CCcceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCC
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVN------STKSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDK 546 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~------~~~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~ 546 (734)
.++++. ...|+++++++.....+.. .+..|.+|+++...+.||+++.. .+.|++++.+ +.....+....+
T Consensus 42 ~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~~~~~~~~~~ 120 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATIL 120 (286)
T ss_dssp CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTC
T ss_pred CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcEEEEecCccC
Confidence 455553 4568888877654444422 23578999997678999999965 7889998865 443333322345
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR 625 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~ 625 (734)
..|.+|++|+ .++||+++...++|.+.+.+|.....+.. ..+..|.+|++|+ .|.||+++.. ...|.+.+.+|...
T Consensus 121 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~ 197 (286)
T 1q7f_A 121 QHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEGQYL 197 (286)
T ss_dssp SCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTCCEE
T ss_pred CCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC-CCEEEEEcCCCCEE
Confidence 6899999996 56799999988999999999877665543 4567899999998 5789999964 47899999988755
Q ss_pred EEEEEc-CCCCceeEEEecCCCeEEEEeCCCC-eEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceE
Q psy8875 626 NMVIVS-DIKWPNGLTLDLVQRRLYWVDAKLN-EISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIY 702 (734)
Q Consensus 626 ~~lv~~-~l~~P~glavD~~~~~LYw~D~~~~-~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~ 702 (734)
..+... .+..|.+|++|+ .++||+++...+ +|.+++.+|...+.+... .....|.+|++. .++||+++. .++|.
T Consensus 198 ~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~g~l~vs~~-~~~v~ 274 (286)
T 1q7f_A 198 RQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESK-VKHAQCFDVALMDDGSVVLASK-DYRLY 274 (286)
T ss_dssp EEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEES-SCCSCEEEEEEETTTEEEEEET-TTEEE
T ss_pred EEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEccc-CCCCcceeEEECCCCcEEEECC-CCeEE
Confidence 444322 257899999995 679999998886 999999998877666542 234568899995 679999986 46666
Q ss_pred EEe
Q psy8875 703 KAN 705 (734)
Q Consensus 703 ~~~ 705 (734)
.++
T Consensus 275 v~~ 277 (286)
T 1q7f_A 275 IYR 277 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 44
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.66 E-value=9.6e-15 Score=154.76 Aligned_cols=219 Identities=11% Similarity=0.105 Sum_probs=159.8
Q ss_pred ccceEEeecCCCceEEEec--------------------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE
Q psy8875 482 KHDIRKISLDHHEMTAIVN--------------------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV 541 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~--------------------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~ 541 (734)
...|++++.++..+..+.. ....|.+|++++..+.||+++... .|++++++++.. +.+
T Consensus 39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~-~i~~~d~~~g~~-~~~ 116 (322)
T 2fp8_A 39 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYY-HLSVVGSEGGHA-TQL 116 (322)
T ss_dssp TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTT-EEEEECTTCEEC-EEE
T ss_pred CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCC-CEEEEeCCCCEE-EEe
Confidence 4578888777655554431 124689999997678999999764 488888774332 222
Q ss_pred Ee----CCCCCccceeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC
Q psy8875 542 IE----EDKTIADGLAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600 (734)
Q Consensus 542 ~~----~~~~~p~glAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~ 600 (734)
.. ..+..|.+|++|+..++||+++.. .++|++.+.++...+++. ..+..|.+|++++.
T Consensus 117 ~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d 195 (322)
T 2fp8_A 117 ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSAD 195 (322)
T ss_dssp ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTT
T ss_pred cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCC
Confidence 21 124568999999646799999975 267999988765554444 45778999999998
Q ss_pred CCeEEEEecCCCceEEEeccCCC---ceEEEEEcCCCCceeEEEecCCCeEEEEeCC----------CCeEEEEecCCCc
Q psy8875 601 DGWMYWSDWGQNAKIERAGMDGS---HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK----------LNEISSCDYNGGN 667 (734)
Q Consensus 601 ~g~LYwtd~~~~~~I~~~~ldG~---~~~~lv~~~l~~P~glavD~~~~~LYw~D~~----------~~~I~~~~~dG~~ 667 (734)
.++||+++.. ..+|++.++++. ..+++.. +..|.||++|. .++||+++.. .++|.+++.+|..
T Consensus 196 g~~lyv~d~~-~~~I~~~~~~~~~~~~~~~~~~--~~gP~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~ 271 (322)
T 2fp8_A 196 SSFVLVAEFL-SHQIVKYWLEGPKKGTAEVLVK--IPNPGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNI 271 (322)
T ss_dssp SSEEEEEEGG-GTEEEEEESSSTTTTCEEEEEE--CSSEEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCE
T ss_pred CCEEEEEeCC-CCeEEEEECCCCcCCccceEEe--CCCCCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCE
Confidence 7789999975 479999999863 3344443 22399999995 6689999865 5689999998876
Q ss_pred eEEEEcCCC-CCCCCeEEEEECCEEEEEeCCCCceEEEecc
Q psy8875 668 RRLVLYSPQ-TLSHPFSISTFEDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 668 ~~~i~~~~~-~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~ 707 (734)
.+.+..... .+..|.+++..+++||+++..++.|.+++..
T Consensus 272 ~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 272 LEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred EEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 666553221 2567888888999999999999999999754
No 45
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=9.6e-14 Score=143.96 Aligned_cols=227 Identities=17% Similarity=0.252 Sum_probs=167.4
Q ss_pred ceeeeeec--cceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875 475 ASLLFARK--HDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD 550 (734)
Q Consensus 475 ~~l~~~~~--~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~ 550 (734)
..++++.. ..|.+++++ ..+..+. .....|.+|++++ .+.||+++...+.|++++++ +....+.+......|.
T Consensus 26 g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 102 (299)
T 2z2n_A 26 GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPY 102 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCce
Confidence 34555553 568888877 4444433 2356789999986 67899998878889999887 4433333333456899
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
+|++|+ .++||+++...+.|.+.+++|.............|.+|++|+ .|.||+++.. ...|.+.+.+|......+.
T Consensus 103 ~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~ 179 (299)
T 2z2n_A 103 GITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ-NNAIGRITESGDITEFKIP 179 (299)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-TTEEEEECTTCCEEEEECS
T ss_pred eeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC-CCEEEEEcCCCcEEEeeCC
Confidence 999995 678999998888999999977665554444567899999997 5799999854 4789999886654443233
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G 709 (734)
.....|.+|++|+ .++||+++...+.|.+++.+|.... +. .......|.+|++. +++||++++..+.|.++++ +|
T Consensus 180 ~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g 255 (299)
T 2z2n_A 180 TPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITE-FK-IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN 255 (299)
T ss_dssp STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEE-EE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT
T ss_pred CCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEE-EE-CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC
Confidence 4567799999995 4779999988899999999655333 32 22345689999995 6789999998899999987 56
Q ss_pred Cc
Q psy8875 710 DN 711 (734)
Q Consensus 710 ~~ 711 (734)
+.
T Consensus 256 ~~ 257 (299)
T 2z2n_A 256 II 257 (299)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 46
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=6.1e-14 Score=145.52 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=164.2
Q ss_pred eeeeeec--cceEEeecCCCceEEEe-c-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 476 SLLFARK--HDIRKISLDHHEMTAIV-N-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 476 ~l~~~~~--~~I~~i~l~~~~~~~l~-~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
.++++.. ..|.+++.++ ....+. + ....|.+|++++ .+.||+++...+.|++++++ +......+......|.+
T Consensus 74 ~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKKG-GFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp CEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCCeEEEECCCC-CeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 4555543 5688888774 333332 2 346789999995 67899999878899999887 55444433335678999
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
|++|+ .++||+++...+.|.+.+.+|..........+..|.+|++|+ .|.||+++.. ...|.+.+.+|......+..
T Consensus 151 i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~ 227 (300)
T 2qc5_A 151 ITLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM-GNKIGRITTTGEISEYDIPT 227 (300)
T ss_dssp EEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEECSS
T ss_pred EEECC-CCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccC-CCEEEEEcCCCcEEEEECCC
Confidence 99995 466999999889999999987766544445567899999997 6799999964 46899999877655443334
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~ 706 (734)
....|.+|++|. .++||+++...+.|.+++.+|......+ ......|.+|++. .+.||+++. + .|.++++
T Consensus 228 ~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 228 PNARPHAITAGK-NSEIWFTEWGANQIGRITNDNTIQEYQL--QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEEC--CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCceEEEECC-CCCEEEeccCCCeEEEECCCCcEEEEEC--CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 567899999995 4779999988899999999765443222 2235679999995 688999998 5 8888875
No 47
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=1.7e-13 Score=145.55 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=161.6
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCccceeeecc
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIADGLAVDWI 557 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p~glAvD~~ 557 (734)
...|..+++........++....|.+|++++. ++||+++...+.|.++++..+.....+.... ...|.+|+++
T Consensus 63 ~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-- 139 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-- 139 (328)
T ss_dssp GTEEEEEETTTCCEEEEEECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--
T ss_pred CCEEEEEECcccEEEEEcCCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--
Confidence 35688888876665444466788999999764 5999999778899999987544332222111 1279999994
Q ss_pred CCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC---------CceEEEeccCCCceEE
Q psy8875 558 YSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ---------NAKIERAGMDGSHRNM 627 (734)
Q Consensus 558 ~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~---------~~~I~~~~ldG~~~~~ 627 (734)
.++||+++++ .++|.+.++........+. ....|.+|++++ .|+||++..+. ...|.++++.......
T Consensus 140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDTETDKVVDELT-IGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp TTEEEEEECTTCCEEEEEETTTTEEEEEEE-CSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCEEEEEECCCCeEEEEEE-cCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 8999999984 8899999987544332232 245799999997 57899998653 3689999886443322
Q ss_pred EEE-cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE--EEEcCCCCCCCCeEEEEE--CCEEEEEe----CCC
Q psy8875 628 VIV-SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR--LVLYSPQTLSHPFSISTF--EDWLYWSD----WQQ 698 (734)
Q Consensus 628 lv~-~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~--~i~~~~~~~~~P~gl~v~--~~~lywtd----~~~ 698 (734)
.+. .....|++|++++.+++||+++. .|+++++...... .++. .....|.+|++. +++||+++ +..
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~--~~~~~p~gi~vdp~~g~lyva~~~~y~~~ 292 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLE--FRDTKYYGLTVNPNNGEVYVADAIDYQQQ 292 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBC--CCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeec--CCCCceEEEEEcCCCCeEEEEcccccccC
Confidence 222 22347999999988999999986 8999998654431 1111 114679999994 79999999 788
Q ss_pred CceEEEeccCCCceEEEe
Q psy8875 699 KAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 699 ~~v~~~~~~~G~~~~~l~ 716 (734)
+.|.+++.. |+.+..+.
T Consensus 293 ~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 293 GIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEEEECTT-CCEEEEEE
T ss_pred CEEEEECCC-CCEEEEEE
Confidence 999999886 88777664
No 48
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=1e-13 Score=144.65 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=161.0
Q ss_pred ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875 489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568 (734)
Q Consensus 489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~ 568 (734)
...+..++.+......+.+++|++..+.|||++...+.|++++++++ ...+ ......|.+|++|+ .++||+++...
T Consensus 14 ~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~-dg~l~v~~~~~ 89 (296)
T 3e5z_A 14 FPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNK-QGHLIACSHGL 89 (296)
T ss_dssp SCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECT-TCCEEEEETTT
T ss_pred cCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECC-CCcEEEEecCC
Confidence 33455667777778889999999988789999999999999999854 3333 33456799999996 57799999888
Q ss_pred CeEEEEeC-CCCceEEEEc----CCCCCceeEEEeCCCCeEEEEecC----------------CCceEEEeccCCCceEE
Q psy8875 569 NTIELANF-EGTMRKVLVR----SYLDEPRSLALNPIDGWMYWSDWG----------------QNAKIERAGMDGSHRNM 627 (734)
Q Consensus 569 ~~I~~~~l-dG~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~----------------~~~~I~~~~ldG~~~~~ 627 (734)
+.|.+.++ +|... .+.. .....|.+|++|+ .|.||++|.. ....|++.+.+|..+
T Consensus 90 ~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-- 165 (296)
T 3e5z_A 90 RRLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS-- 165 (296)
T ss_dssp TEEEEECSTTCCEE-EEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE--
T ss_pred CeEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCEE--
Confidence 89999999 56543 3332 1245789999998 6889998741 135899998885433
Q ss_pred EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCc---eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCce
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGN---RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAI 701 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~---~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v 701 (734)
.+...+..|+||++++.++.| |++...++|++++++ |.- ++++ . .....|.+|++. +++||++. .+.|
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v 239 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGV 239 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred EeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeE
Confidence 344678889999999777777 999999999999985 332 3333 2 345679999994 68899998 5789
Q ss_pred EEEeccCCCceEEEec
Q psy8875 702 YKANKFTGDNLTAITG 717 (734)
Q Consensus 702 ~~~~~~~G~~~~~l~~ 717 (734)
.++++. |+.+..+..
T Consensus 240 ~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 240 HVLTPD-GDELGRVLT 254 (296)
T ss_dssp EEECTT-SCEEEEEEC
T ss_pred EEECCC-CCEEEEEEC
Confidence 999874 776666654
No 49
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.61 E-value=5.5e-14 Score=147.86 Aligned_cols=212 Identities=11% Similarity=-0.012 Sum_probs=150.4
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC--CeEEEEeCCCCc
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK--NTIELANFEGTM 580 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~--~~I~~~~ldG~~ 580 (734)
..|.++++++ .+.|||+|...++|++++.+ +... .++. ....|.+|++++. ++||+++... .+|.+++.....
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~-g~~~-~~~~-~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQ-IHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-EEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCC-CceE-EEEe-CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCe
Confidence 6789999997 57799999999999999988 4332 2333 2357999999955 6699999764 358887654333
Q ss_pred eEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE----------EcCCCCceeEEEecCCCeEE
Q psy8875 581 RKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI----------VSDIKWPNGLTLDLVQRRLY 649 (734)
Q Consensus 581 ~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv----------~~~l~~P~glavD~~~~~LY 649 (734)
.+.+. ......|.++++. ..+.+|+++.. .++|++.+.++...++.. ...+..|+|| ++.+++||
T Consensus 107 ~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~-~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPL-SDTQYLTADSY-RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp EEEEEECTTCSCEEEEEES-SSSEEEEEETT-TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred EEEEEeCCCccccCccccc-CCCcEEEEECC-CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence 33333 2345678899875 46789999964 479999998764322221 1245689999 44588999
Q ss_pred EEeCCCCeEEEEecCC--C--ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCC
Q psy8875 650 WVDAKLNEISSCDYNG--G--NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEP 724 (734)
Q Consensus 650 w~D~~~~~I~~~~~dG--~--~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P 724 (734)
++|...++|+++++++ . .++++.. +..|.+|++. +++||++++.+++|.++++ +|+...+......+..|
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~-~G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGS 257 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECC-CCCEEEEeecccccCCc
Confidence 9999999999999885 2 2444432 3679999995 6899999999999999987 46543332222224566
Q ss_pred ccCC
Q psy8875 725 LNSP 728 (734)
Q Consensus 725 ~~i~ 728 (734)
..++
T Consensus 258 ~~~a 261 (306)
T 2p4o_A 258 TAVA 261 (306)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
No 50
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=2.6e-13 Score=140.64 Aligned_cols=224 Identities=13% Similarity=0.157 Sum_probs=161.8
Q ss_pred eeeeee--ccceEEeecCCCceEEEe-c-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIV-N-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~-~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
.++++. ...|.+++.++. ...+. + ....|.+|++++ .+.||+++...+.|++++++ +....+........|.+
T Consensus 69 ~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 69 EVWFTENAANKIGRITKKGI-IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSF 145 (299)
T ss_dssp CEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEE
T ss_pred CEEEeCCCCCeEEEECCCCc-EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCce
Confidence 455554 346888887643 33332 2 456789999996 57899998878899999884 55444433334567999
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
|++|. .++||+++...+.|.+.+++|......+......|.+|++|+. |.||+++.. ...|.+.+.+|......+..
T Consensus 146 i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~ 222 (299)
T 2z2n_A 146 ITLGS-DNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEII-GNKIGRITTSGEITEFKIPT 222 (299)
T ss_dssp EEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETT-TTEEEEECTTCCEEEEECSS
T ss_pred EEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccC-CceEEEECCCCcEEEEECCC
Confidence 99995 5799999988899999999766554434455778999999975 789999864 46899998866543322233
Q ss_pred CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCC
Q psy8875 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G 709 (734)
....|.+|++|+ .++||+++...+.|.+++.+|..+ .+. .......|.+|++.++.||+++. .+.|.++++.++
T Consensus 223 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~-~~~-~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 223 PNARPHAITAGA-GIDLWFTEWGANKIGRLTSNNIIE-EYP-IQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTCCEEEEEECS-TTCEEEEETTTTEEEEEETTTEEE-EEE-CSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCceeEEECC-CCCEEEeccCCceEEEECCCCceE-EEe-CCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence 457899999995 577999998889999999976432 222 12335679999997789999987 578888876554
No 51
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.58 E-value=2.6e-13 Score=142.47 Aligned_cols=214 Identities=21% Similarity=0.337 Sum_probs=159.8
Q ss_pred CCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCe
Q psy8875 491 DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNT 570 (734)
Q Consensus 491 ~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~ 570 (734)
.+..++.+......+.+++|++..+.|||++...++|++++.+ +.. +++.. ....|.+|++|+ .++||+++...++
T Consensus 33 ~~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~-~~~~~~gl~~d~-dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 33 GDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD-ATAFTNGNAVDA-QQRLVHCEHGRRA 108 (305)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE-SCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred CCCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC-CCCccceeeECC-CCCEEEEECCCCE
Confidence 4556777888888899999999888899999999999999885 443 33332 446799999996 5679999988889
Q ss_pred EEEEeCCCCceEEEEc----CCCCCceeEEEeCCCCeEEEEec--C--------------CCceEEEeccCCCceEEEEE
Q psy8875 571 IELANFEGTMRKVLVR----SYLDEPRSLALNPIDGWMYWSDW--G--------------QNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 571 I~~~~ldG~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~--~--------------~~~~I~~~~ldG~~~~~lv~ 630 (734)
|.+.+.+|+.. ++.. ..+..|++|++|+ .|.||+||. + ....|++.+.++...+.+.
T Consensus 109 v~~~~~~g~~~-~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 109 ITRSDADGQAH-LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEECTTSCEE-EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEECCCCCEE-EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 99999987644 3332 1246789999997 688999873 1 1257999988544444343
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCC-----CeEEEEecCCCc---eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCce
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKL-----NEISSCDYNGGN---RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAI 701 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~-----~~I~~~~~dG~~---~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v 701 (734)
.+..|+||++++.++.|||++... ++|+++++++.. .+++... ....|.+|+++ +++||++.+ +.|
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lwv~~~--~gv 260 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLWSSSG--TGV 260 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEEECCS--SEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEEEecC--CcE
Confidence 677899999998888999999874 799999987642 3344332 34578999994 677887773 469
Q ss_pred EEEeccCCCceEEEec
Q psy8875 702 YKANKFTGDNLTAITG 717 (734)
Q Consensus 702 ~~~~~~~G~~~~~l~~ 717 (734)
+++++ +|+.+..+..
T Consensus 261 ~~~~~-~g~~~~~~~~ 275 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPT 275 (305)
T ss_dssp EEECT-TSCEEEEEEC
T ss_pred EEECC-CCCEEEEEEC
Confidence 99987 6777666654
No 52
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.57 E-value=6.3e-13 Score=139.72 Aligned_cols=213 Identities=11% Similarity=0.135 Sum_probs=150.8
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
.||+++ ...|++++.++. ...+......|.+|++++. ++||+++.... +|++++...+....+........+.+
T Consensus 44 ~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g 121 (306)
T 2p4o_A 44 TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNG 121 (306)
T ss_dssp CEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEE
T ss_pred CEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCc
Confidence 466665 467999988874 3334444568999999974 66999997643 58888766555433322234456778
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE-E---------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL-V---------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l-~---------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld 621 (734)
+++ |..+++|+++...++|++.+.++...++. . ...+..|++| ++..++||+++.. ..+|++.+++
T Consensus 122 ~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-~~~I~~~~~~ 197 (306)
T 2p4o_A 122 ITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-KMLLLRIPVD 197 (306)
T ss_dssp EEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-TTEEEEEEBC
T ss_pred ccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-CCEEEEEEeC
Confidence 886 57788999999889999999876432222 1 1345689998 5557899999975 4799999987
Q ss_pred C--C--ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-----CCEEE
Q psy8875 622 G--S--HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-----EDWLY 692 (734)
Q Consensus 622 G--~--~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-----~~~ly 692 (734)
+ . .++++.. +..|.||++|. +++||+++...++|.+++.+|.... +......+..|.++++. .++||
T Consensus 198 ~~g~~~~~~~~~~--~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 198 STDKPGEPEIFVE--QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIY 273 (306)
T ss_dssp TTSCBCCCEEEEE--SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEE-EECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred CCCCCCccEEEec--cCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCEEE-EeecccccCCceEEEEecccCCCCEEE
Confidence 5 2 2333332 46799999995 5689999999999999999875433 22211235789999985 37999
Q ss_pred EEeCCC
Q psy8875 693 WSDWQQ 698 (734)
Q Consensus 693 wtd~~~ 698 (734)
+++.+.
T Consensus 274 Vt~~~~ 279 (306)
T 2p4o_A 274 VVTNGG 279 (306)
T ss_dssp EEECTT
T ss_pred EECCCC
Confidence 999864
No 53
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.55 E-value=1.8e-13 Score=146.94 Aligned_cols=211 Identities=18% Similarity=0.198 Sum_probs=149.4
Q ss_pred CceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE----EeCCCCCccceeeecc---CCcEEEEe
Q psy8875 493 HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV----IEEDKTIADGLAVDWI---YSHIYWTD 565 (734)
Q Consensus 493 ~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~----~~~~~~~p~glAvD~~---~~~lY~td 565 (734)
...+.++..+..|.+|++++ .++||+++.. ++|+++. + +....+. ...+...|.|||+++. ++.||+++
T Consensus 21 ~~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 21 LRVEEVVGGLEVPWALAFLP-DGGMLIAERP-GRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CCEEEEECCCSCEEEEEECT-TSCEEEEETT-TEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred cEEEEEECCCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 35667777899999999997 4679999865 8999988 4 4332221 1124568999999987 78999998
Q ss_pred CCC-----CeEEEEeCCCC---ceEEEEc------CCCCCceeEEEeCCCCeEEEEecC------------CCceEEEec
Q psy8875 566 AHK-----NTIELANFEGT---MRKVLVR------SYLDEPRSLALNPIDGWMYWSDWG------------QNAKIERAG 619 (734)
Q Consensus 566 ~~~-----~~I~~~~ldG~---~~~~l~~------~~l~~P~~iavD~~~g~LYwtd~~------------~~~~I~~~~ 619 (734)
... .+|.++++++. ..++++. .....|.+|+++| .|+||+++.. ..++|.|++
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~ 175 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLT 175 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence 754 78999988764 2334432 2346789999998 5799999731 126899999
Q ss_pred cCCCc------------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe--------EEEEecCCCc------------
Q psy8875 620 MDGSH------------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE--------ISSCDYNGGN------------ 667 (734)
Q Consensus 620 ldG~~------------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~--------I~~~~~dG~~------------ 667 (734)
.+|+. ...++...+..|.||++|+.+++||++|...+. |.++.. |.+
T Consensus 176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGND 254 (352)
T ss_dssp TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCC
T ss_pred CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCC
Confidence 99831 222445578889999999878999999977665 555543 221
Q ss_pred ---eEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875 668 ---RRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 668 ---~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
...++.- .....|.||++..+.||++++..++|+++....+.
T Consensus 255 ~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~ 299 (352)
T 2ism_A 255 PRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGER 299 (352)
T ss_dssp TTSCCCSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEET
T ss_pred CCCcCCeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCC
Confidence 0111111 11246899999999999999999999999765443
No 54
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.54 E-value=3.7e-12 Score=135.25 Aligned_cols=230 Identities=11% Similarity=0.102 Sum_probs=169.9
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC--------Ccccee
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT--------IADGLA 553 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~--------~p~glA 553 (734)
...|+.+++........+.....+.++++++..+.||+++...+.|+.+++..+.....+...... .|.+++
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 346888888766655555545668889999888889999988899999998865543333221111 278899
Q ss_pred eeccCCcEEEEeC-CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-
Q psy8875 554 VDWIYSHIYWTDA-HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS- 631 (734)
Q Consensus 554 vD~~~~~lY~td~-~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~- 631 (734)
+++.++.||+++. ..++|.+.++........+......|.+++++|..++||+++. .+.|.+.++........+..
T Consensus 148 ~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~ 225 (353)
T 3vgz_A 148 ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA--DGELITIDTADNKILSRKKLL 225 (353)
T ss_dssp EETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT--TSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC--CCeEEEEECCCCeEEEEEEcC
Confidence 9998899999984 4678999999766555555434556999999999999999984 46888888765443333332
Q ss_pred ---CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEec
Q psy8875 632 ---DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 632 ---~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~ 706 (734)
....|.+|++++.+++||+++...+.|..+++........+. +..|.++++ .+++||+++...+.|..++.
T Consensus 226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA----APESLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE----CSSCCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE----cCCCceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 234578899999999999999888999999986554433333 244667777 45679999998899999998
Q ss_pred cCCCceEEEec
Q psy8875 707 FTGDNLTAITG 717 (734)
Q Consensus 707 ~~G~~~~~l~~ 717 (734)
.+++.+..+..
T Consensus 302 ~~~~~~~~~~~ 312 (353)
T 3vgz_A 302 KSYKVVKTFDT 312 (353)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCeEEEEEec
Confidence 88887766653
No 55
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.49 E-value=1.5e-12 Score=139.82 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=149.1
Q ss_pred ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-----eCCCCCccceeeecc---CCcEEEEe
Q psy8875 494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDWI---YSHIYWTD 565 (734)
Q Consensus 494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-----~~~~~~p~glAvD~~---~~~lY~td 565 (734)
.++.++..+..|.+|++++ .++||+++.. ++|++++.+ |. +.+. ..+...|.|||+++. ++.||+++
T Consensus 20 ~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~-G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 20 KISEVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPS-GK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp EEEEEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSS-CE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCC-Cc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 4556677889999999997 5789999876 899998754 43 3332 224567999999987 79999998
Q ss_pred CC---C----CeEEEEeCCCC-----ceEEEEc----CCCCCceeEEEeCCCCeEEEEecC------------CCceEEE
Q psy8875 566 AH---K----NTIELANFEGT-----MRKVLVR----SYLDEPRSLALNPIDGWMYWSDWG------------QNAKIER 617 (734)
Q Consensus 566 ~~---~----~~I~~~~ldG~-----~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~------------~~~~I~~ 617 (734)
.. . .+|.++++++. ..++|+. .....|.+|+++| .|+||++.-. ..++|.|
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 63 3 68999988765 2334432 2345789999998 6799999621 1258999
Q ss_pred eccCCC--------ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe---EEEEecCCCc---------------eEEE
Q psy8875 618 AGMDGS--------HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE---ISSCDYNGGN---------------RRLV 671 (734)
Q Consensus 618 ~~ldG~--------~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~---I~~~~~dG~~---------------~~~i 671 (734)
++.||+ ..+ ++...+..|.||++|+.+++||++|...+. |..+.. |.+ ...+
T Consensus 174 i~~dG~~p~~npf~~~~-i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~ 251 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSP-IWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPV 251 (354)
T ss_dssp ECTTSCCCTTSSSTTCC-EEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred EcCCCCCCCCCCCCCCc-EEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCE
Confidence 999997 333 445678899999999878999999987654 554432 321 0111
Q ss_pred EcCCCCCCCCeEEEE--------ECCEEEEEeCCCCceEEEeccC
Q psy8875 672 LYSPQTLSHPFSIST--------FEDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 672 ~~~~~~~~~P~gl~v--------~~~~lywtd~~~~~v~~~~~~~ 708 (734)
+.-......|.||++ ..+.||++++..++|+++....
T Consensus 252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 111012346899999 5789999999999999998654
No 56
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=1.3e-12 Score=136.78 Aligned_cols=217 Identities=15% Similarity=0.180 Sum_probs=155.4
Q ss_pred ceEEEecCCcceEEEeeeccCCeEEEE-------EeCCCcEEEEecCCCCceEEEEe---CCCCCccceeeeccCCcEEE
Q psy8875 494 EMTAIVNSTKSATAIDFVFRTGMIFWS-------DISEKKIYKAPIDEGSERTVVIE---EDKTIADGLAVDWIYSHIYW 563 (734)
Q Consensus 494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~-------d~~~~~I~~~~l~~g~~~~~~~~---~~~~~p~glAvD~~~~~lY~ 563 (734)
....+...+..|.+++|+ ..+.|||+ +...+.|+++++..+....+... .....|.+|++|+.+++||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 9 LFTKVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CCEEEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred hHhhhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence 344566778899999999 57799999 77778899998765544332210 02256899999976589999
Q ss_pred EeCCCCeEEEEeCCCCceEEE-Ec----CCCCCceeEEEeCCCCeEEEEecCC--------------CceEEEeccCCCc
Q psy8875 564 TDAHKNTIELANFEGTMRKVL-VR----SYLDEPRSLALNPIDGWMYWSDWGQ--------------NAKIERAGMDGSH 624 (734)
Q Consensus 564 td~~~~~I~~~~ldG~~~~~l-~~----~~l~~P~~iavD~~~g~LYwtd~~~--------------~~~I~~~~ldG~~ 624 (734)
++.. ..|.+.+++|.. ..+ .. .....|.+|++|+ .|.||+++.+. ...|++.+.+|..
T Consensus 88 ~~~~-~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (314)
T 1pjx_A 88 ADMR-LGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM 164 (314)
T ss_dssp EETT-TEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred EECC-CCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCE
Confidence 9875 489999988543 333 21 1234689999998 57899998643 2589999888653
Q ss_pred eEEEEEcCCCCceeEEEe----cCCCeEEEEeCCCCeEEEEecCCCc----eEEEEcCCCCC-CCCeEEEEE-CCEEEEE
Q psy8875 625 RNMVIVSDIKWPNGLTLD----LVQRRLYWVDAKLNEISSCDYNGGN----RRLVLYSPQTL-SHPFSISTF-EDWLYWS 694 (734)
Q Consensus 625 ~~~lv~~~l~~P~glavD----~~~~~LYw~D~~~~~I~~~~~dG~~----~~~i~~~~~~~-~~P~gl~v~-~~~lywt 694 (734)
.. + ...+..|++|+++ +.+++|||++...++|.++++++.. .+.+....... ..|.+|++. .++||++
T Consensus 165 ~~-~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 165 IQ-V-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EE-E-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred EE-e-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE
Confidence 33 2 2345679999998 7777999999988999999876321 22333222222 568999995 5899999
Q ss_pred eCCCCceEEEeccCCCceEEEe
Q psy8875 695 DWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 695 d~~~~~v~~~~~~~G~~~~~l~ 716 (734)
++..+.|+++++.+|+.+..+.
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEE
T ss_pred EcCCCEEEEEcCCCCcEeEEEe
Confidence 9888899999987787766664
No 57
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=1.1e-11 Score=131.19 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=157.2
Q ss_pred ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC----C
Q psy8875 494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK----N 569 (734)
Q Consensus 494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~----~ 569 (734)
.+..+......+.+++|++ .+.|||++...+.|++++++++....+. ......|.+|++|+. ++||++.... +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD-GRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT-SCEEEEECTTSSSCC
T ss_pred eeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC-CcEEEEeCCCCCCCc
Confidence 3444555666789999996 5679999988899999998855443333 223467999999954 6899998765 6
Q ss_pred eEEEEeCCCCceEEEEc--CCCCCceeEEEeCCCCeEEEEecCC-----CceEEEeccCCCceEEEEEcCCCCceeEEEe
Q psy8875 570 TIELANFEGTMRKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQ-----NAKIERAGMDGSHRNMVIVSDIKWPNGLTLD 642 (734)
Q Consensus 570 ~I~~~~ldG~~~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~-----~~~I~~~~ldG~~~~~lv~~~l~~P~glavD 642 (734)
.|.+.++++...+.++. .....|.+|++|+ .|.||+++... ...|++.+.++...+.+. ..+..|++|+++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~ 190 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALS 190 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEEC
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEEC
Confidence 89999998877654443 2345799999998 57899988531 368999998875544443 345679999999
Q ss_pred cCCCeEEEEeCCCCeEEEEecC--CCceEE-----EEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 643 LVQRRLYWVDAKLNEISSCDYN--GGNRRL-----VLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 643 ~~~~~LYw~D~~~~~I~~~~~d--G~~~~~-----i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
+.+++||+++...+.|++++++ |..... +... .....|.+|++. +++||++++..+.|+++++ +|+.+..
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~ 268 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQ 268 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec-CCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEE
Confidence 8777899999888899999984 443322 1111 112468899995 5789999988889999987 6766666
Q ss_pred Ee
Q psy8875 715 IT 716 (734)
Q Consensus 715 l~ 716 (734)
+.
T Consensus 269 ~~ 270 (333)
T 2dg1_A 269 IL 270 (333)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 58
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=99.47 E-value=1.1e-14 Score=126.96 Aligned_cols=88 Identities=43% Similarity=1.054 Sum_probs=42.8
Q ss_pred CCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCC
Q psy8875 377 PLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVA 456 (734)
Q Consensus 377 ~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~ 456 (734)
..+|.+. .|++|||...+++|++.|++++++|+|.|++||.+. +++.|++||||..+.+|.++|+|+.++|.|.|++
T Consensus 19 ~~~~~~~--~Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~ 95 (107)
T 2w2n_E 19 ENLYFQG--AMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95 (107)
T ss_dssp -CCCCSC--CBSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC---------------------------
T ss_pred CCCcCCC--CCcCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccccccCCCCCcCCeeecCCCCEEEECCC
Confidence 4455544 589999998778999999999999999999999986 7889999999987678999999999999999999
Q ss_pred CeeeCCCCCccc
Q psy8875 457 GYIKDPHHPTQC 468 (734)
Q Consensus 457 gy~~~~~~~t~C 468 (734)
||.++.+.++ |
T Consensus 96 Gy~~~~d~~~-C 106 (107)
T 2w2n_E 96 GFQLDPHTKA-C 106 (107)
T ss_dssp ------------
T ss_pred CceECCCCCc-c
Confidence 9999877655 5
No 59
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=3.5e-12 Score=136.28 Aligned_cols=215 Identities=14% Similarity=0.055 Sum_probs=147.8
Q ss_pred cceEEEeeeccCCeEEEEEeC--CC--cEEEEecCCCCceEEEE-------eCCCCCccceeeeccCCcEEEEeCC----
Q psy8875 503 KSATAIDFVFRTGMIFWSDIS--EK--KIYKAPIDEGSERTVVI-------EEDKTIADGLAVDWIYSHIYWTDAH---- 567 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~--~~--~I~~~~l~~g~~~~~~~-------~~~~~~p~glAvD~~~~~lY~td~~---- 567 (734)
..|.+|++++ .++||++... .+ +|.+++ + +.. ..+ ...+..|.+|++|+. ++|||+|.+
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~-g~~--~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-Q-DGL--IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-T-TEE--EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHT
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-C-CCe--ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcC
Confidence 5789999986 5789998642 23 677776 3 321 111 124678999999965 789999987
Q ss_pred -CCeEEEEeCC-CCceEEEEcC-----CCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCceEEEEEc-------
Q psy8875 568 -KNTIELANFE-GTMRKVLVRS-----YLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSHRNMVIVS------- 631 (734)
Q Consensus 568 -~~~I~~~~ld-G~~~~~l~~~-----~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~~~~lv~~------- 631 (734)
..+|.+.++. |+..+.+... ....|++|+||+..+++|++|.+ ....|.+.+++......++..
T Consensus 91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 5799999987 4434444321 12467999999988999999962 346888888763322222211
Q ss_pred -------C---------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecC----CC--ce------EEEEcCCCC
Q psy8875 632 -------D---------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN----GG--NR------RLVLYSPQT 677 (734)
Q Consensus 632 -------~---------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d----G~--~~------~~i~~~~~~ 677 (734)
. ...|+||++++.+++||+++...++|++++.+ +. .. ..+- .
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~ 246 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS----E 246 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE----E
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc----c
Confidence 0 12479999999888999999988899999853 21 11 1111 1
Q ss_pred CCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875 678 LSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 678 ~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
...|.||+++ ++.||++++..++|.++++.+|+...++. ...+.+|.+++
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va 297 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFN 297 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEE
T ss_pred CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeE
Confidence 3479999994 68999999999999999975676444433 33466777664
No 60
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.44 E-value=2.3e-11 Score=129.04 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=152.2
Q ss_pred cceEEeecCCCceEEEe-------cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee
Q psy8875 483 HDIRKISLDHHEMTAIV-------NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD 555 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~-------~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD 555 (734)
..|..++.....+...+ .-...+.+|+++ .++||++....+.|.++++..+.....+ . ....|.+|+++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFL 92 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEE
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEe
Confidence 45666666544433211 011357788886 7899999988899999998865543433 3 56789999997
Q ss_pred ccCCcEEEEeCCCCeEEEEeCCCCceE-EEEcCC----CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 556 WIYSHIYWTDAHKNTIELANFEGTMRK-VLVRSY----LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 556 ~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~~~~----l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
+. ++||+++...++|.+.++...... .+.... ...|.+|++ ..++||+++++....|.++++........+.
T Consensus 93 ~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 55 599999976789999998765443 232222 228999999 4789999998645789999887544333333
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCC----------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCC
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKL----------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQ 698 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~----------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~ 698 (734)
. -..|++|++|+ .++||++.... +.|.+++.........+.. ....+|.+|++. +++||+++.
T Consensus 170 ~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 170 I-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp C-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--
T ss_pred c-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--
Confidence 2 35699999984 67899998765 7899999875544322321 113479999996 789999886
Q ss_pred CceEEEeccCCCc
Q psy8875 699 KAIYKANKFTGDN 711 (734)
Q Consensus 699 ~~v~~~~~~~G~~ 711 (734)
.|++++..+++.
T Consensus 245 -~v~~~d~~t~~~ 256 (328)
T 3dsm_A 245 -DIWRMPVEADRV 256 (328)
T ss_dssp -SEEEEETTCSSC
T ss_pred -EEEEEECCCCce
Confidence 899999877765
No 61
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=6e-11 Score=123.42 Aligned_cols=218 Identities=11% Similarity=0.113 Sum_probs=156.4
Q ss_pred eeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe---CCCCCccc
Q psy8875 477 LLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE---EDKTIADG 551 (734)
Q Consensus 477 l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~---~~~~~p~g 551 (734)
|+++. ...|+++++++. ...+......|.+|++++ .+.||+++...+.|+++++..|....+... .....|.+
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 119 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPND 119 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCC
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCC
Confidence 45543 467888988877 666655667799999997 567999987778999999864554333211 12346889
Q ss_pred eeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCce
Q psy8875 552 LAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK 614 (734)
Q Consensus 552 lAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~ 614 (734)
|++|+ .++||+++.. .+.|++++.+|... .+ ...+..|.+|+++|....| |++.. ..+
T Consensus 120 i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~-~~~~~~~~gi~~s~dg~~l-v~~~~-~~~ 194 (296)
T 3e5z_A 120 VCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS-AP-IRDRVKPNGLAFLPSGNLL-VSDTG-DNA 194 (296)
T ss_dssp EEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE-EE-ECCCSSEEEEEECTTSCEE-EEETT-TTE
T ss_pred EEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCEE-Ee-ecCCCCCccEEECCCCCEE-EEeCC-CCe
Confidence 99995 6789998751 35899998885543 33 3667889999999977777 99864 478
Q ss_pred EEEeccC--CCc---eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--
Q psy8875 615 IERAGMD--GSH---RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-- 687 (734)
Q Consensus 615 I~~~~ld--G~~---~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-- 687 (734)
|++.+++ |.. .+++ ......|.+|++| .+++||++. .+.|.+++.+|.....+... .. |..+++.
T Consensus 195 i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~---~~-~~~~~f~~~ 266 (296)
T 3e5z_A 195 THRYCLNARGETEYQGVHF-TVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTPDGDELGRVLTP---QT-TSNLCFGGP 266 (296)
T ss_dssp EEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECTTSCEEEEEECS---SC-CCEEEEEST
T ss_pred EEEEEECCCCcCcCCCeEe-eCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECCCCCEEEEEECC---CC-ceeEEEECC
Confidence 9998885 443 3333 4445679999999 566899998 67999999998766655432 23 8888884
Q ss_pred -CCEEEEEeCCCCceEEEeccCCCc
Q psy8875 688 -EDWLYWSDWQQKAIYKANKFTGDN 711 (734)
Q Consensus 688 -~~~lywtd~~~~~v~~~~~~~G~~ 711 (734)
++.||++.. +.|++++..+.+.
T Consensus 267 d~~~L~v~t~--~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 267 EGRTLYMTVS--TEFWSIETNVRGL 289 (296)
T ss_dssp TSCEEEEEET--TEEEEEECSCCBC
T ss_pred CCCEEEEEcC--CeEEEEEcccccc
Confidence 247999875 4799998765543
No 62
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=7.1e-12 Score=133.92 Aligned_cols=195 Identities=17% Similarity=0.232 Sum_probs=140.1
Q ss_pred CCcceEEEeeeccCCeEEEEEeC-----CCcEEEEecCCCCceEEE-EeCC----CCCccceeeeccCCcEEEEeC---C
Q psy8875 501 STKSATAIDFVFRTGMIFWSDIS-----EKKIYKAPIDEGSERTVV-IEED----KTIADGLAVDWIYSHIYWTDA---H 567 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~-----~~~I~~~~l~~g~~~~~~-~~~~----~~~p~glAvD~~~~~lY~td~---~ 567 (734)
.+..|.+|++|+. ++|||+|.. ..+|+++++..+.....+ +... ...|.+|+||+..+++|++|. .
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3578999999974 889999976 578999998855433222 2211 235789999988899999998 7
Q ss_pred CCeEEEEeCC-CCceEEEEcC-----------------------------CCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875 568 KNTIELANFE-GTMRKVLVRS-----------------------------YLDEPRSLALNPIDGWMYWSDWGQNAKIER 617 (734)
Q Consensus 568 ~~~I~~~~ld-G~~~~~l~~~-----------------------------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~ 617 (734)
.+.|.+.++. |+..+++ .. -...|.||+++|....||+++.. ..+|++
T Consensus 144 ~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-~~~l~~ 221 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-STSMYR 221 (343)
T ss_dssp GCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-CSEEEE
T ss_pred CCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-CCeEEE
Confidence 8899999986 4433332 11 01357999999988899999964 358998
Q ss_pred eccC----CCc--eE----EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec-CCCceEEEEcCCCCCCCCeEEEE
Q psy8875 618 AGMD----GSH--RN----MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY-NGGNRRLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 618 ~~ld----G~~--~~----~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~i~~~~~~~~~P~gl~v 686 (734)
++.+ +.. .+ +........|.||++|. +++||++++..++|.+++. +|. ..+++.. ..+.+|.+|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-~~~~~p~~va~ 298 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRA-YKLLVTD-EKLSWTDSFNF 298 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-GGGSCEEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCC-EEEEEEC-CceecCCeeEE
Confidence 8642 211 00 01112234799999995 6899999999999999999 765 4445443 24788999999
Q ss_pred -ECCEEEEEeCCCCce
Q psy8875 687 -FEDWLYWSDWQQKAI 701 (734)
Q Consensus 687 -~~~~lywtd~~~~~v 701 (734)
.+++||+++...+++
T Consensus 299 ~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CTTSCEEEEECCGGGS
T ss_pred CCCCcEEEEeCccccc
Confidence 468899999876655
No 63
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.43 E-value=6.8e-11 Score=125.45 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=158.4
Q ss_pred CcceEEEeeeccCCeEEEEEeC------CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875 502 TKSATAIDFVFRTGMIFWSDIS------EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~------~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ 575 (734)
...+.++++++..+.||+++.. .+.|+.+++..+.....+.. ...|.++++++.++.||+++...+.|.+.+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3568899999988999999865 56899999885544333322 346999999998888999999889999999
Q ss_pred CCCCce-EEEEcCCCC--------CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCC
Q psy8875 576 FEGTMR-KVLVRSYLD--------EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR 646 (734)
Q Consensus 576 ldG~~~-~~l~~~~l~--------~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~ 646 (734)
+..... ..+...... .|.+++++|..++||+++++....|++.++........+......|.++++++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 865443 333322222 38999999999999999976667899999876544444432345699999999899
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEcC-C-CCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 647 RLYWVDAKLNEISSCDYNGGNRRLVLYS-P-QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 647 ~LYw~D~~~~~I~~~~~dG~~~~~i~~~-~-~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
+||+++. .+.|..+++........+.. . .....|.+|++. +++||+++...+.|+.++..+++.+..+..
T Consensus 198 ~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 198 RLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 9999986 67899988765544433322 1 123456778884 678999999989999999988887777653
No 64
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.43 E-value=7.1e-11 Score=119.55 Aligned_cols=204 Identities=8% Similarity=0.102 Sum_probs=146.6
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR- 581 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~- 581 (734)
..+.||+|++..++||.+.-..++|+++++. |.....+.-.+...++|||++ ..+.+|+++...++|.+..++....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCee
Confidence 5789999999889999877778999999998 554433333456789999998 4566778888888998887654332
Q ss_pred EEE--EcCCC-CCc-----eeEEEeCCCCeEEEEecCCCceEEEec--cCCCceEEEEE------cCCCCceeEEEecCC
Q psy8875 582 KVL--VRSYL-DEP-----RSLALNPIDGWMYWSDWGQNAKIERAG--MDGSHRNMVIV------SDIKWPNGLTLDLVQ 645 (734)
Q Consensus 582 ~~l--~~~~l-~~P-----~~iavD~~~g~LYwtd~~~~~~I~~~~--ldG~~~~~lv~------~~l~~P~glavD~~~ 645 (734)
.++ +.-.+ ..| .|||+||.+++||.+.......|++.+ +.+...+++-. ..+..+.+|++|+.+
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 111 11111 234 899999999999999865544788876 22222233211 135678999999999
Q ss_pred CeEEEEeCCCCeEEEEecCCCceEEEEcCC------CCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCC
Q psy8875 646 RRLYWVDAKLNEISSCDYNGGNRRLVLYSP------QTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 646 ~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~------~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G 709 (734)
++||+.....+.|..++.+|.-+..+.-.. ..+.+|-||++ .++.||++.-. +.+|++.+..|
T Consensus 185 g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~~~~ 254 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTPQSS 254 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC---
T ss_pred CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEecCC
Confidence 999999999999999999998555443221 13578999999 56889999655 68999877543
No 65
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=2.6e-11 Score=128.56 Aligned_cols=211 Identities=15% Similarity=0.204 Sum_probs=150.0
Q ss_pred eEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875 495 MTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL 573 (734)
Q Consensus 495 ~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~ 573 (734)
.+.+.. ....+.+++|++.++.|||++...+.|++++++++... .+ . ....|.+|++++. +++|++.. ..|.+
T Consensus 40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~-~~~~v~~i~~~~d-g~l~v~~~--~gl~~ 113 (326)
T 2ghs_A 40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-A-LPFMGSALAKISD-SKQLIASD--DGLFL 113 (326)
T ss_dssp CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-E-CSSCEEEEEEEET-TEEEEEET--TEEEE
T ss_pred eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-E-CCCcceEEEEeCC-CeEEEEEC--CCEEE
Confidence 344444 23467899999988999999999999999998854322 22 2 2246889999854 67777763 56999
Q ss_pred EeCCCCceEEEEcCC----CCCceeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCceeEEEecC
Q psy8875 574 ANFEGTMRKVLVRSY----LDEPRSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV 644 (734)
Q Consensus 574 ~~ldG~~~~~l~~~~----l~~P~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~ 644 (734)
+++++...+.+.... ...|+++++|+ .|+||+++.+ ....|++.+ +|+.+. +...+..|++|++++.
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~--~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK--LFADISIPNSICFSPD 189 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE--EEEEESSEEEEEECTT
T ss_pred EECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE--eeCCCcccCCeEEcCC
Confidence 998665555554321 24588999998 5678888753 136899988 654332 2344567999999988
Q ss_pred CCeEEEEeCCCCeEEEEecC---C-C--ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 645 QRRLYWVDAKLNEISSCDYN---G-G--NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~d---G-~--~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+++|||++...+.|++++++ | . .++++.........|.+|+++ ++.||++.++.+.|+++++ +|+.+..+.
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 88999999988999999985 4 2 234443322234568999995 6789999988889999987 677666554
No 66
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.39 E-value=3.1e-11 Score=129.39 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=144.7
Q ss_pred eeeeec-cceEEeecCCCceEEE------ecCCcceEEEeeecc---CCeEEEEEeCC-----CcEEEEecCCCC--ceE
Q psy8875 477 LLFARK-HDIRKISLDHHEMTAI------VNSTKSATAIDFVFR---TGMIFWSDISE-----KKIYKAPIDEGS--ERT 539 (734)
Q Consensus 477 l~~~~~-~~I~~i~l~~~~~~~l------~~~~~~~~~i~~d~~---~~~lyw~d~~~-----~~I~~~~l~~g~--~~~ 539 (734)
|+++.. ..|+++. ++. .+.+ ......|.+|++++. ++.||+++... .+|+|+.++++. ..+
T Consensus 44 l~V~e~~g~I~~i~-~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~ 121 (352)
T 2ism_A 44 MLIAERPGRIRLFR-EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDR 121 (352)
T ss_dssp EEEEETTTEEEEEE-TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEE
T ss_pred EEEEeCCCeEEEEE-CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceE
Confidence 555543 4677776 443 2222 124568999999987 78999998754 789999987432 122
Q ss_pred EEEe------CCCCCccceeeeccCCcEEEEeCC-------------CCeEEEEeCCCCc------------eEEEEcCC
Q psy8875 540 VVIE------EDKTIADGLAVDWIYSHIYWTDAH-------------KNTIELANFEGTM------------RKVLVRSY 588 (734)
Q Consensus 540 ~~~~------~~~~~p~glAvD~~~~~lY~td~~-------------~~~I~~~~ldG~~------------~~~l~~~~ 588 (734)
+++. .....|.+|++++ .++||+++.. .++|.+++.+|+. ...++...
T Consensus 122 ~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G 200 (352)
T 2ism_A 122 VVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLG 200 (352)
T ss_dssp EEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEEC
T ss_pred EEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEc
Confidence 3332 2345688999996 4699999742 3689999999831 11233456
Q ss_pred CCCceeEEEeCCCCeEEEEecCCCc-------eEEEeccCCC---------------ceEEEEEcCCCCceeEEEecCCC
Q psy8875 589 LDEPRSLALNPIDGWMYWSDWGQNA-------KIERAGMDGS---------------HRNMVIVSDIKWPNGLTLDLVQR 646 (734)
Q Consensus 589 l~~P~~iavD~~~g~LYwtd~~~~~-------~I~~~~ldG~---------------~~~~lv~~~l~~P~glavD~~~~ 646 (734)
+.+|.+|++||..|.||+++.+... .|.++...+. ...++.......|.||++ ..+
T Consensus 201 ~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~--~~G 278 (352)
T 2ism_A 201 HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF--FRG 278 (352)
T ss_dssp CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE--ETT
T ss_pred CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE--ECC
Confidence 7889999999988999999987533 3666543220 011111122345899999 578
Q ss_pred eEEEEeCCCCeEEEEecCCCc-------eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCC
Q psy8875 647 RLYWVDAKLNEISSCDYNGGN-------RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQ 698 (734)
Q Consensus 647 ~LYw~D~~~~~I~~~~~dG~~-------~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~ 698 (734)
.||+++...++|.++++++.. ...++. ....|.+|++ ..+.||++++..
T Consensus 279 ~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 279 DLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRLREVQVGPDGALYVTTSNR 335 (352)
T ss_dssp EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCEEEEEECTTSCEEEEECST
T ss_pred EEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCeeEEEECCCCcEEEEEeCC
Confidence 999999999999999988654 233332 2568999999 467999999864
No 67
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=99.39 E-value=8.1e-11 Score=126.20 Aligned_cols=223 Identities=11% Similarity=0.111 Sum_probs=152.4
Q ss_pred eeeeeec-cceEEeecCCCceEEEe------cCCcceEEEeeecc---CCeEEEEEeC---C----CcEEEEecCCCC--
Q psy8875 476 SLLFARK-HDIRKISLDHHEMTAIV------NSTKSATAIDFVFR---TGMIFWSDIS---E----KKIYKAPIDEGS-- 536 (734)
Q Consensus 476 ~l~~~~~-~~I~~i~l~~~~~~~l~------~~~~~~~~i~~d~~---~~~lyw~d~~---~----~~I~~~~l~~g~-- 536 (734)
.|+++.. ..|++++.++. +.+. .....+.+|++++. ++.||+++.. . .+|+|+.++++.
T Consensus 41 ~l~V~e~~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~ 118 (354)
T 3a9g_A 41 RYLVTERPGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFK 118 (354)
T ss_dssp EEEEEETTTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCC
T ss_pred eEEEEeCCCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcC
Confidence 4555553 56777765554 3322 23567999999987 7899999864 3 689999887431
Q ss_pred --ceEEEEe----CCCCCccceeeeccCCcEEEEeCC-------------CCeEEEEeCCCC--------ceEEEEcCCC
Q psy8875 537 --ERTVVIE----EDKTIADGLAVDWIYSHIYWTDAH-------------KNTIELANFEGT--------MRKVLVRSYL 589 (734)
Q Consensus 537 --~~~~~~~----~~~~~p~glAvD~~~~~lY~td~~-------------~~~I~~~~ldG~--------~~~~l~~~~l 589 (734)
..++++. .....+.+|++++ .++||++... .++|.|++.+|+ ..+ ++...+
T Consensus 119 ~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~-i~a~G~ 196 (354)
T 3a9g_A 119 LKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP-IWSYGH 196 (354)
T ss_dssp EEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC-EEEECC
T ss_pred cCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc-EEEEcc
Confidence 1233322 2345688999996 5689999632 368999999987 223 344678
Q ss_pred CCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCc---------------eEEEEE--cCCCCceeEEE-------ec
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSH---------------RNMVIV--SDIKWPNGLTL-------DL 643 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~---------------~~~lv~--~~l~~P~glav-------D~ 643 (734)
.+|.+|++|+..|.||+++.+.. ..|.++.. |.+ ...++. .....|.||++ +
T Consensus 197 rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~- 274 (354)
T 3a9g_A 197 RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG- 274 (354)
T ss_dssp SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-
T ss_pred CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-
Confidence 89999999998899999997643 24555543 221 011111 12345899999 4
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCc----eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCC-CC---------ceEEEec
Q psy8875 644 VQRRLYWVDAKLNEISSCDYNGGN----RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQ-QK---------AIYKANK 706 (734)
Q Consensus 644 ~~~~LYw~D~~~~~I~~~~~dG~~----~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~-~~---------~v~~~~~ 706 (734)
..+.||+++...++|.++++++.. ...++. .....|.+|++. ++.||++++. .+ +|+|+.+
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~ 350 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVS 350 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence 578999999999999999998642 223332 235679999994 6799999984 44 7888754
No 68
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=1e-10 Score=122.52 Aligned_cols=215 Identities=14% Similarity=0.171 Sum_probs=150.3
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-C--CCCCcc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-E--DKTIAD 550 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~--~~~~p~ 550 (734)
.|+|++ ...|+++..++. ...+......+.++++++ .++||+++...+.|++++++ |....+... . .+..|.
T Consensus 58 ~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp EEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred EEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 356654 356888877543 445545556789999997 56799998877899999987 553332211 1 235688
Q ss_pred ceeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC--
Q psy8875 551 GLAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-- 611 (734)
Q Consensus 551 glAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-- 611 (734)
+|++|+ .++||+||.. .+.|++++.++...+.+. .+..|++|+++|....|||++...
T Consensus 135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC--
T ss_pred CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 999995 6789998741 357999988543333343 677899999999888899999642
Q ss_pred --CceEEEeccCCCc---eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875 612 --NAKIERAGMDGSH---RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 612 --~~~I~~~~ldG~~---~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v 686 (734)
..+|++.++++.. .+++.......|.||++| ..++||++. .+.|.+++.+|.....+... ..|..+++
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv~~--~~gv~~~~~~g~~~~~~~~~----~~~~~~~f 284 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWSSS--GTGVCVFDSDGQLLGHIPTP----GTASNCTF 284 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEECC--SSEEEEECTTSCEEEEEECS----SCCCEEEE
T ss_pred CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEEec--CCcEEEECCCCCEEEEEECC----CceeEEEE
Confidence 2689998887542 233433345679999999 456687776 35799999988876666432 24778888
Q ss_pred --ECCEEEEEeCCCCceEEEe
Q psy8875 687 --FEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 687 --~~~~lywtd~~~~~v~~~~ 705 (734)
..+.||++.. +.|++++
T Consensus 285 ~~d~~~L~it~~--~~l~~~~ 303 (305)
T 3dr2_A 285 DQAQQRLFITGG--PCLWMLP 303 (305)
T ss_dssp CTTSCEEEEEET--TEEEEEE
T ss_pred eCCCCEEEEEcC--CeEEEEE
Confidence 4568988876 3677774
No 69
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.38 E-value=1e-10 Score=122.12 Aligned_cols=210 Identities=14% Similarity=0.111 Sum_probs=147.1
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIA 549 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p 549 (734)
.|+|++ ...|+++++++.....+ .....+.+|++++. +.||++. ...|++++++++.. +.+... ....|
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~ 100 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQS-GGYVATI--GTKFCALNWKEQSA-VVLATVDNDKKNNRF 100 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTT-SSEEEEE--TTEEEEEETTTTEE-EEEEECCTTCSSEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCC-CCEEEEE--CCeEEEEECCCCcE-EEEEecCCCCCCCCC
Confidence 466654 46788888887665433 33457889999875 4566664 56899999875443 333321 23457
Q ss_pred cceeeeccCCcEEEEeC-----------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875 550 DGLAVDWIYSHIYWTDA-----------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA 618 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~-----------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~ 618 (734)
.+|++|+ .++||+++. ..+.|++++.+|....+ ...+..|++|+++|....|||++.. ..+|++.
T Consensus 101 ~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--~~~~~~pngi~~spdg~~lyv~~~~-~~~i~~~ 176 (297)
T 3g4e_A 101 NDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY--FDQVDISNGLDWSLDHKIFYYIDSL-SYSVDAF 176 (297)
T ss_dssp EEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE--EEEESBEEEEEECTTSCEEEEEEGG-GTEEEEE
T ss_pred CCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE--eeccccccceEEcCCCCEEEEecCC-CCcEEEE
Confidence 8899996 567999873 24578998888765442 2456789999999988899999964 4789998
Q ss_pred ccC---CCc--eEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEEC--
Q psy8875 619 GMD---GSH--RNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFE-- 688 (734)
Q Consensus 619 ~ld---G~~--~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~-- 688 (734)
+++ |.. ++++..- ....|.||++|. +++||++....++|.+++.+ |.....+.. ....|.++++.+
T Consensus 177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKL---PVDKTTSCCFGGKN 252 (297)
T ss_dssp EECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEEC---SSSBEEEEEEESGG
T ss_pred eccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEEC---CCCCceEEEEeCCC
Confidence 864 332 2334332 235799999994 57999999888999999997 665555532 235788888853
Q ss_pred -CEEEEEeCCC
Q psy8875 689 -DWLYWSDWQQ 698 (734)
Q Consensus 689 -~~lywtd~~~ 698 (734)
+.||+|....
T Consensus 253 ~~~L~vt~~~~ 263 (297)
T 3g4e_A 253 YSEMYVTCARD 263 (297)
T ss_dssp GCEEEEEEBCT
T ss_pred CCEEEEEcCCc
Confidence 6899998754
No 70
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=99.36 E-value=1.4e-11 Score=132.12 Aligned_cols=215 Identities=10% Similarity=0.087 Sum_probs=145.1
Q ss_pred CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE------EeCCCCCccceeeecc---CCcEE
Q psy8875 492 HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV------IEEDKTIADGLAVDWI---YSHIY 562 (734)
Q Consensus 492 ~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~------~~~~~~~p~glAvD~~---~~~lY 562 (734)
+-..+.++..+..|.+|++++....||+++. .++|++++.+ +...+.+ ...+...|.+||+++. ++.||
T Consensus 7 g~~~~~va~~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 7 TVNVEVLQDKLDHPWALAFLPDNHGMLITLR-GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp CSEEEEEEEEESSEEEEEECSTTCCEEEEET-TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred CcEEEEEECCCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 3345566667889999999985433999986 5889998865 3221111 1123346789999985 89999
Q ss_pred EEeCC-------CCeEEEEeCCCC-----ceEEEEcC------CCCCceeEEEeCCCCeEEEEecCC------------C
Q psy8875 563 WTDAH-------KNTIELANFEGT-----MRKVLVRS------YLDEPRSLALNPIDGWMYWSDWGQ------------N 612 (734)
Q Consensus 563 ~td~~-------~~~I~~~~ldG~-----~~~~l~~~------~l~~P~~iavD~~~g~LYwtd~~~------------~ 612 (734)
+++.. ..+|.++.+++. ..++++.. ....|.+|+++| .|+||++.... .
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCC
Confidence 99764 357888887643 34444421 235689999998 57999996221 3
Q ss_pred ceEEEeccCCCc------------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCce---------
Q psy8875 613 AKIERAGMDGSH------------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGNR--------- 668 (734)
Q Consensus 613 ~~I~~~~ldG~~------------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~~--------- 668 (734)
++|.|++.||+. ...++...+..|.||++|+.+++||++|...+ +|.++.. |.+.
T Consensus 164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~ 242 (353)
T 2g8s_A 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGI 242 (353)
T ss_dssp TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSB
T ss_pred eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCC
Confidence 589999999972 22345567889999999987999999997643 4444322 2110
Q ss_pred ----EEE----------EcCC----CCCCCCeEEEEE--------CCEEEEEeCCCCceEEEeccCCC
Q psy8875 669 ----RLV----------LYSP----QTLSHPFSISTF--------EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 669 ----~~i----------~~~~----~~~~~P~gl~v~--------~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
..+ ...+ .....|.||+++ .+.||++++..++|+++...+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~ 310 (353)
T 2g8s_A 243 NYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK 310 (353)
T ss_dssp CTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred CCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe
Confidence 000 0000 011358899995 48999999999999999876553
No 71
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1e-10 Score=122.13 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=150.9
Q ss_pred ccceEEeecCCCceEEEec-----CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCccce
Q psy8875 482 KHDIRKISLDHHEMTAIVN-----STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIADGL 552 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-----~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p~gl 552 (734)
...|+++++.......+.. ....|.+|++++..+.||+++... .|++++++ +....+.... ....|.+|
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i 122 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC 122 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEE
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCE
Confidence 4568888866555554433 235789999997558999988643 79999887 5433220211 12458899
Q ss_pred eeeccCCcEEEEeCCC---------------CeEEEEeCCCCceEEEEcCCCCCceeEEEe----CCCCeEEEEecCCCc
Q psy8875 553 AVDWIYSHIYWTDAHK---------------NTIELANFEGTMRKVLVRSYLDEPRSLALN----PIDGWMYWSDWGQNA 613 (734)
Q Consensus 553 AvD~~~~~lY~td~~~---------------~~I~~~~ldG~~~~~l~~~~l~~P~~iavD----~~~g~LYwtd~~~~~ 613 (734)
++|+ .++||+++... +.|++.+.+|+.... . ..+..|.+|+++ +..+.||+++.. ..
T Consensus 123 ~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~-~~ 198 (314)
T 1pjx_A 123 AFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV-D-TAFQFPNGIAVRHMNDGRPYQLIVAETP-TK 198 (314)
T ss_dssp EECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE-E-EEESSEEEEEEEECTTSCEEEEEEEETT-TT
T ss_pred EECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEe-c-cCCCCcceEEEecccCCCCCEEEEEECC-CC
Confidence 9995 57899998764 689999888654332 2 345679999999 876689999864 47
Q ss_pred eEEEeccC--CCce--EEEEEc--CC-CCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEE
Q psy8875 614 KIERAGMD--GSHR--NMVIVS--DI-KWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSIS 685 (734)
Q Consensus 614 ~I~~~~ld--G~~~--~~lv~~--~l-~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~ 685 (734)
+|++.+++ |... .++... .. ..|.+|++|. .++||+++...+.|.+++.+ |.....+.. ....|.+|+
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~i~ 274 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLH 274 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---CCCCceeEE
Confidence 89888865 3211 122221 11 5699999994 67999999888899999988 665554432 236789999
Q ss_pred EE-C-CEEEEEeCCCCceEEEecc
Q psy8875 686 TF-E-DWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 686 v~-~-~~lywtd~~~~~v~~~~~~ 707 (734)
+. . .+||+++...+.|++++..
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECS
T ss_pred ECCCCCEEEEEeCCCCeEEEEeCC
Confidence 83 3 4599999888899998764
No 72
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=99.36 E-value=4.8e-11 Score=126.29 Aligned_cols=211 Identities=16% Similarity=0.158 Sum_probs=148.8
Q ss_pred ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-----eCCCCCccceeeecc---CCcEEEEe
Q psy8875 494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDWI---YSHIYWTD 565 (734)
Q Consensus 494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-----~~~~~~p~glAvD~~---~~~lY~td 565 (734)
..+.++.++..|.+|++.+ .+.||+++...++|+++..+++....+.. ..+...|.|||+++. ++.||++.
T Consensus 23 ~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 3456778899999999997 57899999778999999876444322211 124567889999973 78899864
Q ss_pred C--CCCeEEEEeCCCC--------ceEEEEc----CCCCCceeEEEeCCCCeEEEEec------------CCCceEEEec
Q psy8875 566 A--HKNTIELANFEGT--------MRKVLVR----SYLDEPRSLALNPIDGWMYWSDW------------GQNAKIERAG 619 (734)
Q Consensus 566 ~--~~~~I~~~~ldG~--------~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~------------~~~~~I~~~~ 619 (734)
. ..++|.++.+++. ..++|+. ........|+++| .|+||++.- ...++|+|++
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 3 4578999988762 2344442 2345678899998 579999951 1247999999
Q ss_pred cCCC--------ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCce---------------EEEEc
Q psy8875 620 MDGS--------HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGNR---------------RLVLY 673 (734)
Q Consensus 620 ldG~--------~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~~---------------~~i~~ 673 (734)
.||+ ..+ ++...+..|.||++|+ .+.||++|.+.+ +|.++. .|.+. ..++.
T Consensus 181 ~dG~ip~~nPf~~~~-i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 181 PDGEPAPGNPFPGSP-VYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp TTSSBCTTCSSTTCC-EEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred CCCCccCCCCCCCCe-EEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEe
Confidence 9998 333 5567889999999997 699999997654 455543 23221 00000
Q ss_pred CCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCC
Q psy8875 674 SPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 674 ~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G 709 (734)
-......|.||+++.+.+|.+.....+|+++....+
T Consensus 258 ~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 258 WSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp ECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETT
T ss_pred cCCCCCCCcceEEEcCceeeccccCCEEEEEEecCC
Confidence 001123688999999999999999999999975443
No 73
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.36 E-value=2.4e-10 Score=121.43 Aligned_cols=230 Identities=10% Similarity=0.058 Sum_probs=150.1
Q ss_pred cceEEeecCCCceEEE---ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEE-EeCC---------CCC
Q psy8875 483 HDIRKISLDHHEMTAI---VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVV-IEED---------KTI 548 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l---~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~-~~~~---------~~~ 548 (734)
..|+.+++++.....+ ......|.+|++++..+.||+++...+.|...+++. +....+. +... ...
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence 5677777765544333 224567889999998889999987778887777742 2222211 1111 123
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCC--CCceEE--EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC--
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFE--GTMRKV--LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-- 622 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~--l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-- 622 (734)
|.++++++.++ ||+++...++|.+.+++ |....+ +.......|++++++|...+||+++.. ...|...+++.
T Consensus 143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQT 220 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTT
T ss_pred ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCC
Confidence 66799998766 99999988999998887 332221 122334579999999987789998854 35666666653
Q ss_pred CceEEE--EEcC------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEE--CCEE
Q psy8875 623 SHRNMV--IVSD------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTF--EDWL 691 (734)
Q Consensus 623 ~~~~~l--v~~~------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~--~~~l 691 (734)
...+.+ +... ...|.+|++++.+++||++....+.|..++++.. ..+.+.........|.+|++. +.+|
T Consensus 221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence 222211 1111 1348889999888899999988888888887632 223222211223568899994 5689
Q ss_pred EEEeCCCCceEE--EeccCCCceEE
Q psy8875 692 YWSDWQQKAIYK--ANKFTGDNLTA 714 (734)
Q Consensus 692 ywtd~~~~~v~~--~~~~~G~~~~~ 714 (734)
|+++...+.|.. ++..+|+...+
T Consensus 301 ~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 301 VVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEEcCCCcEEEEEEeCCCCeEEec
Confidence 999987666544 46666765443
No 74
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.34 E-value=7.8e-10 Score=116.37 Aligned_cols=224 Identities=11% Similarity=0.043 Sum_probs=157.3
Q ss_pred ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc-eeeeccCC
Q psy8875 482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG-LAVDWIYS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g-lAvD~~~~ 559 (734)
...|+.+++........+. ....+ ++++++..+.||++....+.|+.+++..+......+. ....|.. +++++.++
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~ 96 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQ 96 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSS
T ss_pred CCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCC
Confidence 4678888887666544443 34455 9999998888999998888999999986654122333 2356777 99998888
Q ss_pred cEEEEeCCCC--eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEE--EEEcCC
Q psy8875 560 HIYWTDAHKN--TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNM--VIVSDI 633 (734)
Q Consensus 560 ~lY~td~~~~--~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~--lv~~~l 633 (734)
.||.+....+ .|.+.++........+ .....|.+++++|...+||+++......|...+++ |..... ......
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 8994333324 8999999765544333 23457899999998888999986533325555554 332111 111334
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~ 708 (734)
..|.++++++.+++||++....+.|..+++..... ...+. ....|.+|++. +.+||++....+.|..++..+
T Consensus 176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 56999999988888999999889999999865443 22222 23567888883 567999998888899998877
Q ss_pred CCc
Q psy8875 709 GDN 711 (734)
Q Consensus 709 G~~ 711 (734)
|+.
T Consensus 253 ~~~ 255 (331)
T 3u4y_A 253 GTL 255 (331)
T ss_dssp TEE
T ss_pred Cce
Confidence 765
No 75
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=99.32 E-value=1.5e-13 Score=133.37 Aligned_cols=145 Identities=22% Similarity=0.541 Sum_probs=97.0
Q ss_pred ecCCCCeecC--CcccCCCCCCCCCCCCC---CCC-CCCCCCC--ceecCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy8875 271 TCANGNCIQR--IWLCDGDDDCKDGSDEK---SCQ-PVKCTAG--QFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMN 342 (734)
Q Consensus 271 ~C~~g~Ci~~--~~~Cdg~~dC~dgsDe~---~C~-~~~C~~~--~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~ 342 (734)
.|.||+|++. ++.| .|..|+.+. .|+ ...|... ..+|.++++|++.... .
T Consensus 12 pC~ng~C~~~~g~~~C----~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~------------------~ 69 (186)
T 1z1y_A 12 ICXNGQLVQMSNHFXC----MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP------------------A 69 (186)
T ss_dssp CCBTEEEEECSSCEEE----EECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSST------------------T
T ss_pred CCCCCEeECCCCCeEe----ECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCC------------------c
Confidence 4666777664 5677 677776433 554 3445432 3467666666662100 0
Q ss_pred CCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccc----cCCCcceeecCCCc
Q psy8875 343 SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV----DLPVGYMCECNEGY 418 (734)
Q Consensus 343 ~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~----~~~~~~~C~C~~G~ 418 (734)
..+.|.| .|+.||.+....|.+++|...+..-...|+ +++++|+|.|++||
T Consensus 70 ~~g~y~C-------------------------~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy 124 (186)
T 1z1y_A 70 QVNMYXC-------------------------GCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGX 124 (186)
T ss_dssp SSCSEEE-------------------------EECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEE
T ss_pred CCCCEEC-------------------------CCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCC
Confidence 0156777 455555544445667778754321124666 89999999999999
Q ss_pred EecC-CCCccccc--cCcCCCCCc---ccceeccCCceEEecCCCeeeCCCC
Q psy8875 419 KLSS-NRHTCIDI--DECETPGSC---SQICLNEKGGFKCECVAGYIKDPHH 464 (734)
Q Consensus 419 ~l~~-~~~~C~~~--~eC~~~~~C---~~~C~n~~g~~~C~C~~gy~~~~~~ 464 (734)
.+.. +++.|+++ +||.. +| .++|+++.++|+|.|++||.++...
T Consensus 125 ~g~~~~~~~C~~~~~~~C~~--~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~ 174 (186)
T 1z1y_A 125 VPNPEDEXXCTXTGETACQL--XCNTDNEVCXNVEGVYXCQCMEGFTFDXEX 174 (186)
T ss_dssp EEETTTTTEEEEEECCCCCC--CCCTTTEEEEEETTEEEEEECTTCEEETTT
T ss_pred cccCCCCCcceEcCCCcccc--cccccCcceecCCCCeeeECCCCCccCccc
Confidence 9865 78999976 89974 68 4589999999999999999997654
No 76
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=110.20 Aligned_cols=82 Identities=35% Similarity=0.906 Sum_probs=70.5
Q ss_pred cccccccCCCCC-cCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEec--CCCeeeCCCC
Q psy8875 388 GVDECAKDNGGC-LHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCEC--VAGYIKDPHH 464 (734)
Q Consensus 388 ~~~eC~~~~~~C-~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C--~~gy~~~~~~ 464 (734)
++|||...+..| .+.|++++++|+|.|++||.+..+++.|+++|||.. ++|.++|+|+.++|.|.| .+||.+..+.
T Consensus 2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~-~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~ 80 (87)
T 1z6c_A 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQ 80 (87)
T ss_dssp CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHHH-SCCSSEECCCSSSCCEECCSSSCCBCCTTS
T ss_pred ccccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeCC-CCCCCEEEccCCCEEEECCCCcCCcccCCC
Confidence 578898777667 568999999999999999999988999999999964 679999999999999999 6888887665
Q ss_pred Ccccccc
Q psy8875 465 PTQCKAA 471 (734)
Q Consensus 465 ~t~C~~~ 471 (734)
++ |+++
T Consensus 81 ~~-C~di 86 (87)
T 1z6c_A 81 KS-CEVV 86 (87)
T ss_dssp SS-CBCC
T ss_pred Cc-ceEC
Confidence 54 7653
No 77
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.31 E-value=4.1e-10 Score=118.93 Aligned_cols=226 Identities=13% Similarity=0.172 Sum_probs=154.5
Q ss_pred eeeeee--ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEe-CCCC
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIE-EDKT 547 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~-~~~~ 547 (734)
.|+++. ...|+++++++.....+. .....+.+|++++ .+.||++.... +.|++++++++....++.. ....
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 355543 456888888776666554 3456789999986 46788887665 6899999885544333321 1234
Q ss_pred CccceeeeccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-
Q psy8875 548 IADGLAVDWIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM- 620 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l- 620 (734)
.|.+|++|+ .++||+++.. ...|++++.++.....+. ..+..|.+|++++...+||+++.. ...|++.++
T Consensus 136 ~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~-~~~i~~~d~~ 212 (333)
T 2dg1_A 136 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT-ANRLHRIALE 212 (333)
T ss_dssp CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEEC
T ss_pred cccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCC-CCeEEEEEec
Confidence 688999996 5789999874 468999988875544443 345679999999977789999854 468988888
Q ss_pred -CCCceEE-----EEE-cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC---CCCCCeEEEEE--C
Q psy8875 621 -DGSHRNM-----VIV-SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ---TLSHPFSISTF--E 688 (734)
Q Consensus 621 -dG~~~~~-----lv~-~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~---~~~~P~gl~v~--~ 688 (734)
+|..... +.. .....|.+|++|. .++||+++...+.|.+++.+|...+.+..... .+..|.++++. +
T Consensus 213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp TTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 4443322 111 1124799999994 57899999888899999998776555532110 12268888884 3
Q ss_pred CEEEEEeCCC-----CceEEEec
Q psy8875 689 DWLYWSDWQQ-----KAIYKANK 706 (734)
Q Consensus 689 ~~lywtd~~~-----~~v~~~~~ 706 (734)
++||++.... +.|++++.
T Consensus 292 ~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 292 NQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp CEEEEEEECGGGTCCEEEEEEEC
T ss_pred CEEEEEeCccCCCCCceEEEEec
Confidence 5899887652 46777753
No 78
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.31 E-value=1.5e-14 Score=138.85 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=99.1
Q ss_pred CCCCCCCCcCCCCCCCcccccCcC--CCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccC
Q psy8875 119 PDCSDGSDEKSCKNRTCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINA 196 (734)
Q Consensus 119 ~dC~dg~de~~C~~~~C~~~~f~C--~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~ 196 (734)
.+|.|++||.+| .+|.+.+|+| .+|+|||.+|+|||..||.|||||.+ |.
T Consensus 41 ~~c~d~sDE~~C--~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~--------C~------------------ 92 (215)
T 2gtl_O 41 GSLRHRVEELED--PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD--------CT------------------ 92 (215)
T ss_dssp HHHHHHHHHHSC--CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC--------CC------------------
T ss_pred ccCCcchhhccC--CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccC--------CC------------------
Confidence 478999999999 4799999999 79999999999999999999999988 72
Q ss_pred CCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCCCCC--CCceecCC
Q psy8875 197 HSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCR--SDEFTCAN 274 (734)
Q Consensus 197 ~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~--~~~~~C~~ 274 (734)
.. +|. ..+|+|. +..+ .|.+..++..|...|. ..+|.|.+
T Consensus 93 ---~~-----------------------~C~-~~~F~c~-----~~~~------~C~~~~~~~~c~~~~s~~~~~~fc~~ 134 (215)
T 2gtl_O 93 ---LP-----------------------TKA-GDKFIGD-----VCFD------HCTKRRPEHMTLAFESSSIAAFFTPI 134 (215)
T ss_dssp ---CS-----------------------SCT-TCEEEEE-----EEEE------SSCSSCCSEEEEEEEEEEECTTCTTE
T ss_pred ---CC-----------------------CcC-CCceeee-----ECCC------cccCCCCCCceeeeeccccccccCCC
Confidence 11 565 5788872 2222 2666777777754454 35677877
Q ss_pred C---Ceec-----------CCcccCCCCCCCCCCCCCCCCCCCCCCCceecCC
Q psy8875 275 G---NCIQ-----------RIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQN 313 (734)
Q Consensus 275 g---~Ci~-----------~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~ 313 (734)
+ .||. .+|.|||..+ +|++|..|.++.+...+|.|..
T Consensus 135 ~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~pp~~~~l~f~C~~ 185 (215)
T 2gtl_O 135 ADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHPPEEDGLGLVGEF 185 (215)
T ss_dssp EEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECCSSTTTEEEEEEE
T ss_pred CccCeEEEEEeecCCCccccceeecCEec--CCcceeeecCCCCCCceeEEEe
Confidence 6 4777 7899999999 6999999987767777788864
No 79
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=99.30 E-value=1.4e-12 Score=109.16 Aligned_cols=79 Identities=35% Similarity=0.882 Sum_probs=67.4
Q ss_pred cccccccCCCCCcC-ccccCCCcceeecCCCcEec-CCCCccccccCcCC-CCCcc-cceeccCCceEEecCCCeeeCCC
Q psy8875 388 GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLS-SNRHTCIDIDECET-PGSCS-QICLNEKGGFKCECVAGYIKDPH 463 (734)
Q Consensus 388 ~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~-~~~~~C~~~~eC~~-~~~C~-~~C~n~~g~~~C~C~~gy~~~~~ 463 (734)
++|||+..+..|.+ .|++++++|+|.|++||.+. .+++.|++||||+. +..|. ++|+|+.|+|+|.|++||.+..+
T Consensus 2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~ 81 (86)
T 1lmj_A 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPN 81 (86)
T ss_dssp CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSS
T ss_pred ccccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCC
Confidence 57899877777865 89999999999999999985 35889999999974 35576 69999999999999999999877
Q ss_pred CCc
Q psy8875 464 HPT 466 (734)
Q Consensus 464 ~~t 466 (734)
.++
T Consensus 82 ~~~ 84 (86)
T 1lmj_A 82 ISA 84 (86)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 80
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=99.30 E-value=1.5e-10 Score=124.09 Aligned_cols=227 Identities=12% Similarity=0.155 Sum_probs=149.1
Q ss_pred eeeee-ccceEEeecCCCceEEE-------ecCCcceEEEeeecc---CCeEEEEEeC-------CCcEEEEecCCCC--
Q psy8875 477 LLFAR-KHDIRKISLDHHEMTAI-------VNSTKSATAIDFVFR---TGMIFWSDIS-------EKKIYKAPIDEGS-- 536 (734)
Q Consensus 477 l~~~~-~~~I~~i~l~~~~~~~l-------~~~~~~~~~i~~d~~---~~~lyw~d~~-------~~~I~~~~l~~g~-- 536 (734)
|+++. ...|+++..++...+.+ ......+.+|++++. .+.||+++.. ..+|.|+.++.+.
T Consensus 32 l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~ 111 (353)
T 2g8s_A 32 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK 111 (353)
T ss_dssp EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB
T ss_pred EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC
Confidence 45544 34677776554321111 123446789999986 7999999765 4579998886432
Q ss_pred --ceEEEEeC------CCCCccceeeeccCCcEEEEeCC-------------CCeEEEEeCCCCc------------eEE
Q psy8875 537 --ERTVVIEE------DKTIADGLAVDWIYSHIYWTDAH-------------KNTIELANFEGTM------------RKV 583 (734)
Q Consensus 537 --~~~~~~~~------~~~~p~glAvD~~~~~lY~td~~-------------~~~I~~~~ldG~~------------~~~ 583 (734)
..++++.. ....+.+|++++ .++||++... .++|.|++.+|+. ...
T Consensus 112 ~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~ 190 (353)
T 2g8s_A 112 VTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAE 190 (353)
T ss_dssp EEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTT
T ss_pred CCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCcc
Confidence 23344431 234578999996 5699999643 3689999999872 223
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCC----------------------------ceEEEEEcCC
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGS----------------------------HRNMVIVSDI 633 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~----------------------------~~~~lv~~~l 633 (734)
++...+.+|.+|++|+..|.||++|.+.. ..|.++...+. ...++.....
T Consensus 191 i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 270 (353)
T 2g8s_A 191 IWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS 270 (353)
T ss_dssp EEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC
T ss_pred EEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC
Confidence 44467889999999998999999997642 24444322111 0000111112
Q ss_pred CCceeEEEec------CCCeEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEE-CCEEEEE-eCCCCceE
Q psy8875 634 KWPNGLTLDL------VQRRLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTF-EDWLYWS-DWQQKAIY 702 (734)
Q Consensus 634 ~~P~glavD~------~~~~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~-~~~lywt-d~~~~~v~ 702 (734)
..|.||++.. ..+.||+++...++|.++.+++... ..++. .....|.+|++. ++.||++ |..+++|+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT--DRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG--GGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc--CCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 3588999963 3589999999999999999986422 12222 224589999994 6789996 66788999
Q ss_pred EEec
Q psy8875 703 KANK 706 (734)
Q Consensus 703 ~~~~ 706 (734)
|+.+
T Consensus 349 ri~~ 352 (353)
T 2g8s_A 349 KVSP 352 (353)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9853
No 81
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=99.29 E-value=2.8e-12 Score=106.20 Aligned_cols=73 Identities=38% Similarity=0.938 Sum_probs=64.0
Q ss_pred cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcc-cceeccCCceEEecCCCeeeCCC
Q psy8875 388 GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCS-QICLNEKGGFKCECVAGYIKDPH 463 (734)
Q Consensus 388 ~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~-~~C~n~~g~~~C~C~~gy~~~~~ 463 (734)
++|||.. +..|.+ .|++++++|+|.|++||.+ +++.|+++|||....+|. ++|+|+.++|+|.|++||.++.+
T Consensus 4 dideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~~ 78 (82)
T 1emn_A 4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM 78 (82)
T ss_dssp CCCSSSS-TTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCSS
T ss_pred ccccCCC-CCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCCC
Confidence 6889986 456754 8999999999999999988 588999999998666786 59999999999999999998776
No 82
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=148.26 Aligned_cols=101 Identities=31% Similarity=0.583 Sum_probs=84.8
Q ss_pred CceecCCCceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCccc
Q psy8875 58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQA 137 (734)
Q Consensus 58 ~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~ 137 (734)
..|.|..+.+++..+.||+..+|.+.+++ | |...+|+|.+ ++||+..|+|||..||.|++||.+|.. |..
T Consensus 174 sl~~C~~~~~~~~~h~~DagV~C~~~~~~--c----~~~~~~~C~~--~~ci~~~~~Cdg~~dC~d~sDE~~C~~--c~~ 243 (565)
T 2xrc_A 174 SLAECTFTKRRTMGYQDFADVVCYTQKAD--S----PMDDFFQCVN--GKYISQMKACDGINDCGDQSDELCCKA--CQG 243 (565)
T ss_dssp CGGGSEEECCCCCSSCCCCEEEBCCC---------------CBCTT--SCBCCTTSTTSSSCCSSSSSSSSSBSS--CSS
T ss_pred chhhcccCcccccccccCCceeccccccC--C----CCcCeeECCC--CCccCHHHcCCCcccCCCCcccccccc--cCC
Confidence 45788877788888999999999987643 2 3346699987 689999999999999999999999953 999
Q ss_pred ccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 138 SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 138 ~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
.+|+|.++.||+..++|||..||.||+||.+
T Consensus 244 ~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 244 KGFHCKSGVCIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp SCEEETTTEEECGGGTTSSSCCSSSCTTSSS
T ss_pred CceecCCCcccCccccCCCcccCCCCccccC
Confidence 9999999999999999999999999999987
No 83
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=99.27 E-value=3.9e-10 Score=117.02 Aligned_cols=203 Identities=14% Similarity=0.041 Sum_probs=141.0
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC-------Cccceee---eccCCcEEE-EeC----
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT-------IADGLAV---DWIYSHIYW-TDA---- 566 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~-------~p~glAv---D~~~~~lY~-td~---- 566 (734)
...|.+++||...+++|+++...++|.++++.++...++.+ .++. .|.||.+ |+. ++|++ ++.
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence 34688999999899999999999999999988544444422 2322 5689999 666 77777 552
Q ss_pred --------CCCeEEEEeCC----CCceEEEEc-----C-------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 567 --------HKNTIELANFE----GTMRKVLVR-----S-------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 567 --------~~~~I~~~~ld----G~~~~~l~~-----~-------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
+...|.+.+++ |+....+-. . ....|++||+|+ .|.+|+++....+.|+|++.||
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCC
Confidence 24679999998 544333221 1 223589999997 6999999964227899999999
Q ss_pred CceEEEEEcC-----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc---C-CCCCCCCeEE-EE-ECCEE
Q psy8875 623 SHRNMVIVSD-----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY---S-PQTLSHPFSI-ST-FEDWL 691 (734)
Q Consensus 623 ~~~~~lv~~~-----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~---~-~~~~~~P~gl-~v-~~~~l 691 (734)
+...++.... ...++||++.+.+.+|++++. .++|+++++....+..+.. + ...+..|.+| ++ .++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 9655544321 234789999998999999998 8999999988432211211 1 1246678896 55 67776
Q ss_pred -EEEeCCCCceEEEeccCC
Q psy8875 692 -YWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 692 -ywtd~~~~~v~~~~~~~G 709 (734)
++++...+.+ ++...+|
T Consensus 248 llV~~~~~~~~-~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAI-SFRSWDN 265 (334)
T ss_dssp EEEEEETTEEE-EEECSST
T ss_pred EEEEcCCCCEE-EEECCCC
Confidence 8988766544 3333344
No 84
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.26 E-value=4.2e-09 Score=113.49 Aligned_cols=234 Identities=13% Similarity=0.091 Sum_probs=171.4
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA 553 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA 553 (734)
+++++. ...|+..++........+.....+.+++|++....||++....+.|+..++..+.....+ . ....+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-P-AGSSPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-E-CSSSEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-E-CCCCccceE
Confidence 344443 356777787766655555555678999999988899999888899999998755443333 2 233788999
Q ss_pred eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875 554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633 (734)
Q Consensus 554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l 633 (734)
+.+.++.||++....+.|.+.++........+. ....|.+++++|...+||++... .+.|...++........+.. -
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~~-~ 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNG-DKTVSVINTVTKAVINTVSV-G 157 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEEC-C
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEEEec-C
Confidence 998888999999888999999998665544443 34578999999988889888754 47898888865544333332 3
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeC--CCCceEEEeccCC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDW--QQKAIYKANKFTG 709 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~--~~~~v~~~~~~~G 709 (734)
..|.++++++.+++||++....+.|..+++........+.. ...|.++++. +.+||++.. ..+.|+.++..++
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 56899999988889999988889999999876655444432 3457778873 567888875 5678888888777
Q ss_pred CceEEEec
Q psy8875 710 DNLTAITG 717 (734)
Q Consensus 710 ~~~~~l~~ 717 (734)
+.+..+..
T Consensus 235 ~~~~~~~~ 242 (391)
T 1l0q_A 235 KITARIPV 242 (391)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEec
Confidence 76665543
No 85
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=99.26 E-value=2.1e-10 Score=121.92 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=134.1
Q ss_pred ecC-CcceEEEeeeccCCeEEEEE------------eCCCcEEEEecCCC--CceEEEEeCC-----CCCccceeeecc-
Q psy8875 499 VNS-TKSATAIDFVFRTGMIFWSD------------ISEKKIYKAPIDEG--SERTVVIEED-----KTIADGLAVDWI- 557 (734)
Q Consensus 499 ~~~-~~~~~~i~~d~~~~~lyw~d------------~~~~~I~~~~l~~g--~~~~~~~~~~-----~~~p~glAvD~~- 557 (734)
+++ ...+..|++++ ++.+|.+. ...++|++++++.. ..+++.+... ...|.||.+...
T Consensus 45 i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 344 34677888776 68888875 24778999998732 2233333321 248999999652
Q ss_pred --CCcEEEEeCC--CCeEEEEe--CCCCceEEEE---cCCCCCceeEEEeCCCCeEEEEecC----------------CC
Q psy8875 558 --YSHIYWTDAH--KNTIELAN--FEGTMRKVLV---RSYLDEPRSLALNPIDGWMYWSDWG----------------QN 612 (734)
Q Consensus 558 --~~~lY~td~~--~~~I~~~~--ldG~~~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~----------------~~ 612 (734)
+.+||+++.. ..+|++.. .++.....+. ...+..|+++++|+ .|.+|+++.. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence 3469999987 45666554 4444333222 24578999999997 5787777531 23
Q ss_pred ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC----ceEEEEcCCCCCCCCeEEEEEC
Q psy8875 613 AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG----NRRLVLYSPQTLSHPFSISTFE 688 (734)
Q Consensus 613 ~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~----~~~~i~~~~~~~~~P~gl~v~~ 688 (734)
++|++.+.. ..+ ++...+..||||++++.+++||++|+..++|+++++++. +++++ . ....|.||+++.
T Consensus 203 g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~---~~g~PDGi~vD~ 275 (355)
T 3sre_A 203 SFVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S---FDTLVDNISVDP 275 (355)
T ss_dssp EEEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E---CSSEEEEEEECT
T ss_pred cEEEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e---CCCCCceEEEeC
Confidence 678888763 333 344678999999999999999999999999999998642 23333 2 246799999963
Q ss_pred --CEEEEEe-CCCCceEEEec
Q psy8875 689 --DWLYWSD-WQQKAIYKANK 706 (734)
Q Consensus 689 --~~lywtd-~~~~~v~~~~~ 706 (734)
|.||++. |+..+|.++++
T Consensus 276 e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 276 VTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp TTCCEEEEEESCHHHHHSCCT
T ss_pred CCCcEEEEecCCceEEEEECC
Confidence 8999955 56445544443
No 86
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=99.25 E-value=5.6e-13 Score=118.83 Aligned_cols=85 Identities=33% Similarity=0.649 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCcccccccc--CCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEE
Q psy8875 375 DCPLMQDEDPTKCGVDECAK--DNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC 452 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~--~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C 452 (734)
.|++||.+.. +++++|.. .++.|.+.|++ .++|+|.|++||.+.. ++.|+++|||+.+.+|.++|+|+.++|+|
T Consensus 27 ~C~~Gy~g~~--~~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-g~~C~dideC~~~~~C~~~C~n~~g~y~C 102 (118)
T 1dx5_I 27 VCAEGFAPIP--HEPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD-GFICTDIDECENGGFCSGVCHNLPGTFEC 102 (118)
T ss_dssp ECCTTEEEET--TEEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-TTEEEECCHHHHCSSCSSEEEECSSSEEE
T ss_pred ECCCCccccC--CCCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-CCccccccccCCCCCCcCeEEeCCCCEEE
Confidence 4555554331 23444542 24567788998 5899999999999875 89999999998767898899999999999
Q ss_pred ecCCCeeeCCC
Q psy8875 453 ECVAGYIKDPH 463 (734)
Q Consensus 453 ~C~~gy~~~~~ 463 (734)
.|++||.+..+
T Consensus 103 ~C~~G~~g~~~ 113 (118)
T 1dx5_I 103 ICGPDSALAGQ 113 (118)
T ss_dssp EECSSSSCEEE
T ss_pred ECCCCCccCCC
Confidence 99999988654
No 87
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.25 E-value=4.4e-09 Score=110.57 Aligned_cols=250 Identities=12% Similarity=0.116 Sum_probs=158.4
Q ss_pred eeeeeec--cceEEeecC--CCceEEE--ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCC
Q psy8875 476 SLLFARK--HDIRKISLD--HHEMTAI--VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTI 548 (734)
Q Consensus 476 ~l~~~~~--~~I~~i~l~--~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~ 548 (734)
+|+++.. ..|....++ +.....+ +.....+.+++|++..+.||++....+.|...+++.+... .+........
T Consensus 51 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 130 (343)
T 1ri6_A 51 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG 130 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCC
Confidence 3444443 456665554 4443322 2223478899999988889999887788888777423221 2222234456
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCC--CceE----EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEG--TMRK----VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG--~~~~----~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
|.++++++.++.||+++...+.|.+.++.. .... .+.......|++++++|...+||++... ...|...+++.
T Consensus 131 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-~~~i~~~~~~~ 209 (343)
T 1ri6_A 131 CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELKD 209 (343)
T ss_dssp BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEESSC
T ss_pred ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-CCEEEEEEecC
Confidence 899999998889999997778999988864 3222 1222334689999999988889999843 46777777753
Q ss_pred --CceE-E-EEEc---C---CCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCCCCeEEEEE--C
Q psy8875 623 --SHRN-M-VIVS---D---IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLSHPFSISTF--E 688 (734)
Q Consensus 623 --~~~~-~-lv~~---~---l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v~--~ 688 (734)
...+ . .+.. . ...|.+|++++.+++||++....+.|..++++ +...+.+..... ...|.+|++. +
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg 288 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSG 288 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTS
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CCccceEEECCCC
Confidence 2221 1 1111 1 23566899998888999999888899998887 443343322111 2348888884 5
Q ss_pred CEEEEEeCCCCceEE--EeccCCCceEEEecccccCCCccCC
Q psy8875 689 DWLYWSDWQQKAIYK--ANKFTGDNLTAITGVHQTHEPLNSP 728 (734)
Q Consensus 689 ~~lywtd~~~~~v~~--~~~~~G~~~~~l~~~~~l~~P~~i~ 728 (734)
.+||++....+.|.. ++..+|+.. .+.....-..|..++
T Consensus 289 ~~l~~~~~~~~~v~v~~~d~~~g~~~-~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEIVGEQGLLH-EKGRYAVGQGPMWVV 329 (343)
T ss_dssp SEEEEECTTTCEEEEEEEETTTTEEE-EEEEEECSSSCCEEE
T ss_pred CEEEEecCCCCeEEEEEEcCCCceee-EccccccCCCCeeEE
Confidence 679999876665544 466566533 333222234566553
No 88
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.24 E-value=3.1e-09 Score=108.10 Aligned_cols=195 Identities=11% Similarity=0.033 Sum_probs=137.2
Q ss_pred ceEEEeeeccCCeEEEEEe--CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-
Q psy8875 504 SATAIDFVFRTGMIFWSDI--SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM- 580 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~--~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~- 580 (734)
.+.||+|++. ++||++.. ..+.|.++++..+.....+.-.....+.|++++ +++||++.+..++|.+.+.....
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 4789999865 79999874 367899999986654433322233345567776 68999999999999999987433
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--c---CCCCceeEEEecCCCeEEEEeCCC
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--S---DIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~---~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
...+-.. .|.|+.|.+..++||.++ + .++|..++.+.......+. . .+..|++|++. +++||.+.+..
T Consensus 99 ~~~i~~g---~~~g~glt~Dg~~l~vs~-g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~ 171 (266)
T 2iwa_A 99 IKNFTHQ---MKDGWGLATDGKILYGSD-G-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQT 171 (266)
T ss_dssp EEEEECC---SSSCCEEEECSSSEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEECC---CCCeEEEEECCCEEEEEC-C-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCC
Confidence 3333222 456666666678999998 5 4799999887644322222 1 24468899886 68999999999
Q ss_pred CeEEEEecCCCceEEEEcCC-----------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccC
Q psy8875 656 NEISSCDYNGGNRRLVLYSP-----------QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~ 708 (734)
+.|.++++........+... .....|.||++. +++||+|.....+|+.++...
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 99999998655443333211 112468999996 579999998888888886544
No 89
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=1e-09 Score=119.77 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=151.7
Q ss_pred eeeeeec------cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEE
Q psy8875 476 SLLFARK------HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTV 540 (734)
Q Consensus 476 ~l~~~~~------~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~ 540 (734)
.+|+++. +.|..|++........++....| +|++++..++||+++. ..+.|..+++..+.....
T Consensus 86 ~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~ 164 (426)
T 3c75_H 86 RVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD 164 (426)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred EEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence 4666654 57888888877766656655678 9999999999999985 356788888875544333
Q ss_pred EEeC---C---CCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceE-EEEcCC--CCCcee----EEE---------
Q psy8875 541 VIEE---D---KTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRK-VLVRSY--LDEPRS----LAL--------- 597 (734)
Q Consensus 541 ~~~~---~---~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~-~l~~~~--l~~P~~----iav--------- 597 (734)
+.-. . ...|.++++++.+++||+++.. .+.|.++++...... .|-... ...|.+ +++
T Consensus 165 I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 165 IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEE
Confidence 3221 0 2579999999999999999875 678999888654322 221110 001111 333
Q ss_pred ----------------------------eCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC---------CCcee--
Q psy8875 598 ----------------------------NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI---------KWPNG-- 638 (734)
Q Consensus 598 ----------------------------D~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l---------~~P~g-- 638 (734)
.+..+.+||+.. .++|+++++.+....++-.-.+ ..|.|
T Consensus 245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 333334444432 2355555555433322110000 12555
Q ss_pred -EEEecCCCeEEEEeCC---------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CC-EEEEEeCCCCceEEEe
Q psy8875 639 -LTLDLVQRRLYWVDAK---------LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--ED-WLYWSDWQQKAIYKAN 705 (734)
Q Consensus 639 -lavD~~~~~LYw~D~~---------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~-~lywtd~~~~~v~~~~ 705 (734)
+++++.+++||++... .+.|..+|+....+..-+. ....|.+|++. +. +||.+.+..+.|..++
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~---vg~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE---LGHEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE---CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 8999999999999641 3579999976554333232 12359999994 56 8999999999999999
Q ss_pred ccCCCceEEE
Q psy8875 706 KFTGDNLTAI 715 (734)
Q Consensus 706 ~~~G~~~~~l 715 (734)
..+++.+..|
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999988877
No 90
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.23 E-value=1.4e-09 Score=115.41 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=141.3
Q ss_pred eEEeecCCCceEE--EecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCC
Q psy8875 485 IRKISLDHHEMTA--IVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYS 559 (734)
Q Consensus 485 I~~i~l~~~~~~~--l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~ 559 (734)
|+.++......+. .......|.+|+|++... ||+++.. .+.|+.++++++..+.+.. ......|.+|++++.++
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~ 98 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ 98 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC
Confidence 3444443333333 234457888999998554 9998864 5788888887544322211 22356799999999888
Q ss_pred cEEEEeCCCCeEEEEeCC--CCceEEE--EcC--------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCce
Q psy8875 560 HIYWTDAHKNTIELANFE--GTMRKVL--VRS--------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHR 625 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ld--G~~~~~l--~~~--------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~ 625 (734)
.||++....+.|.+.+++ |....+. ... ....|.+++++|... ||+++.+. ..|...+++ |...
T Consensus 99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~-~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS-DKVYVYNVSDAGQLS 176 (347)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT-TEEEEEEECTTSCEE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC-CEEEEEEECCCCcEE
Confidence 999999878888888774 3332221 111 123577899998665 99998653 577777765 3322
Q ss_pred EEE--EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC--CceEEEE--cC-CC---CCCCCeEEEE--ECCEEEE
Q psy8875 626 NMV--IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNRRLVL--YS-PQ---TLSHPFSIST--FEDWLYW 693 (734)
Q Consensus 626 ~~l--v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~i~--~~-~~---~~~~P~gl~v--~~~~lyw 693 (734)
.+. ....-..|++|++++.+++||+++...+.|..++++. ...+.+. .. .. ....|.+|++ .+.+||+
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 211 1122346899999988888999998888888888774 2222221 11 10 0134778888 3567999
Q ss_pred EeCCCCceEEEecc
Q psy8875 694 SDWQQKAIYKANKF 707 (734)
Q Consensus 694 td~~~~~v~~~~~~ 707 (734)
++...+.|..++..
T Consensus 257 ~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 257 SNRGYNTLAVFAVT 270 (347)
T ss_dssp EEETTTEEEEEEEC
T ss_pred EeCCCCEEEEEEEC
Confidence 99877777766643
No 91
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.23 E-value=4.8e-12 Score=143.74 Aligned_cols=71 Identities=39% Similarity=0.922 Sum_probs=65.5
Q ss_pred CCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCeecCCcccCCCCCCCCCCCCCCCC
Q psy8875 229 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ 300 (734)
Q Consensus 229 ~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C~ 300 (734)
..+|+|.+|+||+..|+|||..||.|++||.+|.. |.+.+|+|.++.||+..++|||..||.+|+||.+|.
T Consensus 206 ~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~C~~-c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~ 276 (565)
T 2xrc_A 206 DDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA-CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCA 276 (565)
T ss_dssp ---CBCTTSCBCCTTSTTSSSCCSSSSSSSSSBSS-CSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred cCeeECCCCCccCHHHcCCCcccCCCCcccccccc-cCCCceecCCCcccCccccCCCcccCCCCccccCcC
Confidence 46699999999999999999999999999999974 999999999999999999999999999999999886
No 92
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.22 E-value=7.4e-09 Score=108.82 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=152.1
Q ss_pred eeeeee--ccceEEeecCC-Cce--EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecC--CCCceEEEEeCCCCC
Q psy8875 476 SLLFAR--KHDIRKISLDH-HEM--TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIEEDKTI 548 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~-~~~--~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~--~g~~~~~~~~~~~~~ 548 (734)
+++++. ...|+.++++. ... ...+.....+.+++|++..+.||++....+.|...+++ ++....+........
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 85 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence 444442 45677777642 222 22234456788899999888899998776788776665 444332221112337
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeC-CCCceEEE-EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC--Cc
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMRKVL-VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG--SH 624 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~~~l-~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG--~~ 624 (734)
|.+|++++.++.||++....+.|.+.++ +|.....+ .......|.+++++|...+||+++.+ ...|...+++. ..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-CCEEEEEEecCCCce
Confidence 9999999888889999988888988887 33322222 12345679999999988899999843 36777777654 32
Q ss_pred eEE----EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC--Cce---EEEEcCCC---CCCCCeEEEEE--CCE
Q psy8875 625 RNM----VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNR---RLVLYSPQ---TLSHPFSISTF--EDW 690 (734)
Q Consensus 625 ~~~----lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~---~~i~~~~~---~~~~P~gl~v~--~~~ 690 (734)
... +....-..|.+|++++.+++||++....+.|..++++. ... ..+...+. ....|.+|++. +.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 221 11122347899999988889999998889999999864 222 12221111 12356678884 568
Q ss_pred EEEEeCCCCceEEEecc
Q psy8875 691 LYWSDWQQKAIYKANKF 707 (734)
Q Consensus 691 lywtd~~~~~v~~~~~~ 707 (734)
||++....+.|..++..
T Consensus 245 l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 245 LYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCEEEEEEEc
Confidence 99999887888777665
No 93
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.21 E-value=1.3e-08 Score=109.65 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=172.3
Q ss_pred eeeee--eccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875 476 SLLFA--RKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA 553 (734)
Q Consensus 476 ~l~~~--~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA 553 (734)
.++++ ....|+.+++........+.....+.+++|++..+.||++....+.|+..++..+..... +. ....+.+++
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-~~-~~~~~~~~~ 122 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VK-TGKSPLGLA 122 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EE-CSSSEEEEE
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-Ee-CCCCcceEE
Confidence 34444 356788888876665555555558899999998889999988788999999885443333 33 345688999
Q ss_pred eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875 554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633 (734)
Q Consensus 554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l 633 (734)
+.+.++.||++....+.|.+.++........+. ....|.+++++|...+||++... .+.|...++........+. ..
T Consensus 123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~-~~ 199 (391)
T 1l0q_A 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFD-SMSISVIDTVTNSVIDTVK-VE 199 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEE-CS
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEEECCCCCEEEEEeCC-CCEEEEEECCCCeEEEEEe-cC
Confidence 998888899999988999999987654444432 24578999999988889988743 4788888887654443333 34
Q ss_pred CCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G 709 (734)
..|.++++++.+.+||++.. ..+.|..+++........+.. ...|.++++. +.+||++....+.|..++..+|
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 56889999988889999876 678999999876554444432 2357788884 5689999888889999998888
Q ss_pred CceEEEe
Q psy8875 710 DNLTAIT 716 (734)
Q Consensus 710 ~~~~~l~ 716 (734)
+.+..+.
T Consensus 277 ~~~~~~~ 283 (391)
T 1l0q_A 277 TITATMA 283 (391)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 8777664
No 94
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.20 E-value=1.1e-08 Score=109.37 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=139.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCC---------CCCccceeeeccCCcEEEEeCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEED---------KTIADGLAVDWIYSHIYWTDAH 567 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~---------~~~p~glAvD~~~~~lY~td~~ 567 (734)
....|..+++ ..+.||+++...+.|..++++.... ...+...+ ...|.++++++.++.||+++..
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 3457888888 4778999998888888888763221 11111111 1234679999888889999998
Q ss_pred CCeEEEEeCCCCce-------------EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE----
Q psy8875 568 KNTIELANFEGTMR-------------KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV---- 630 (734)
Q Consensus 568 ~~~I~~~~ldG~~~-------------~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~---- 630 (734)
.+.|.+.+++.... ..+.......|++++++|...+||+++.. ...|...+++....+.+..
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-GGTVIAFRYADGMLDEIQTVAAD 254 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TCEEEEEEEETTEEEEEEEEESC
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-CCeEEEEEecCCceEEeEEEecC
Confidence 88998887764321 22333456689999999988889999853 3677777775433222211
Q ss_pred -cCCCCceeEEEecCCCeEEEEeCC-CCeEEEEecC--CCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEE-
Q psy8875 631 -SDIKWPNGLTLDLVQRRLYWVDAK-LNEISSCDYN--GGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYK- 703 (734)
Q Consensus 631 -~~l~~P~glavD~~~~~LYw~D~~-~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~- 703 (734)
.....|.+|++++.+++||+++.. .+.|..++++ ....+.+..... ...|.+|++. +.+||+++...+.|..
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF 333 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence 123457899999999999999987 7888887775 233333322111 3578899984 5689999977666554
Q ss_pred -EeccCCCceE
Q psy8875 704 -ANKFTGDNLT 713 (734)
Q Consensus 704 -~~~~~G~~~~ 713 (734)
++..+|+...
T Consensus 334 ~~d~~~g~~~~ 344 (361)
T 3scy_A 334 ERDQATGLLTD 344 (361)
T ss_dssp EECTTTCCEEE
T ss_pred EEECCCCcEee
Confidence 6666666443
No 95
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=99.19 E-value=1e-08 Score=108.47 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=145.7
Q ss_pred eeeeeec--cceEEeecCCCceEEE-------ecCCcceEEEeeecc---CCeEEEEEe--CCCcEEEEecCCCC-----
Q psy8875 476 SLLFARK--HDIRKISLDHHEMTAI-------VNSTKSATAIDFVFR---TGMIFWSDI--SEKKIYKAPIDEGS----- 536 (734)
Q Consensus 476 ~l~~~~~--~~I~~i~l~~~~~~~l-------~~~~~~~~~i~~d~~---~~~lyw~d~--~~~~I~~~~l~~g~----- 536 (734)
.||++.+ ..|+++..++...+.+ ..+...+.+|++++. ++.||++.. ...+|.|+.++++.
T Consensus 44 ~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~ 123 (347)
T 3das_A 44 DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQ 123 (347)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCC
T ss_pred cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccccc
Confidence 4666664 5688887654443332 124567899999983 788998653 45789999887521
Q ss_pred --ceEEEEe----CCCCCccceeeeccCCcEEEEeC-------------CCCeEEEEeCCCC--------ceEEEEcCCC
Q psy8875 537 --ERTVVIE----EDKTIADGLAVDWIYSHIYWTDA-------------HKNTIELANFEGT--------MRKVLVRSYL 589 (734)
Q Consensus 537 --~~~~~~~----~~~~~p~glAvD~~~~~lY~td~-------------~~~~I~~~~ldG~--------~~~~l~~~~l 589 (734)
..++++. ........|++++ .++||++.. ..++|.|++.+|+ ..+ ++...+
T Consensus 124 ~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~-i~a~G~ 201 (347)
T 3das_A 124 LGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSP-VYSYGH 201 (347)
T ss_dssp BCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCC-EEEBCC
T ss_pred CCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCe-EEeeCC
Confidence 1334332 1234567799996 569999942 3589999999997 333 455688
Q ss_pred CCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCce----------------EEE-EEcCCCCceeEEEecCCCeEEE
Q psy8875 590 DEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSHR----------------NMV-IVSDIKWPNGLTLDLVQRRLYW 650 (734)
Q Consensus 590 ~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~~----------------~~l-v~~~l~~P~glavD~~~~~LYw 650 (734)
.+|.+|++|| .|.||++|.+.. ..|.++. .|.+- .++ .......|.||++. .+.||.
T Consensus 202 RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~ 277 (347)
T 3das_A 202 RNVQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWM 277 (347)
T ss_dssp SBCCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEE
T ss_pred CCcceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceee
Confidence 9999999999 699999997642 3455543 22220 011 11112368899985 789999
Q ss_pred EeCCCCeEEEEecCCCc----eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCC
Q psy8875 651 VDAKLNEISSCDYNGGN----RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQ 697 (734)
Q Consensus 651 ~D~~~~~I~~~~~dG~~----~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~ 697 (734)
+.....+|.++.+++.. .+.++. .....|.+|++ -.+.||+++..
T Consensus 278 ~~l~~~~l~~v~~~~~~~~~~~e~~l~--~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 278 AGLRGERLWRIPLKGTAAAADPQAFLE--GEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp EESTTCSEEEEEEETTEESSCCEEEST--TTSSCEEEEEEEETTEEEEEECT
T ss_pred ccccCCEEEEEEecCCceecceEEeec--CCCCCccEEEECCCCcEEEEEcC
Confidence 99999999999988753 234443 23568999998 57899999654
No 96
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.19 E-value=4.7e-09 Score=110.33 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=143.3
Q ss_pred eeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcCC
Q psy8875 510 FVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRSY 588 (734)
Q Consensus 510 ~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~~ 588 (734)
|+...+.+|+++...+.|..+++..+.....+ ......| ++++++.++.||++....++|.+.++..... ...+ ..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-cc
Confidence 44557889999999999999998865543333 3455567 9999988888999999889999999976553 2222 23
Q ss_pred CCCcee-EEEeCCCCeEEEEecCCCc--eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe-EEEEecC
Q psy8875 589 LDEPRS-LALNPIDGWMYWSDWGQNA--KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE-ISSCDYN 664 (734)
Q Consensus 589 l~~P~~-iavD~~~g~LYwtd~~~~~--~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~-I~~~~~d 664 (734)
...|.. ++++|...+||.+. .... .|...+++.......+. .-..|+++++++.+++||+++...+. |..++++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVT-GLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKID 159 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECC-CSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEec-CCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence 457888 99999888899444 3223 89999887654443333 34568999999888899999987777 7776665
Q ss_pred CCce-----EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCc---eEEEe
Q psy8875 665 GGNR-----RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDN---LTAIT 716 (734)
Q Consensus 665 G~~~-----~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~---~~~l~ 716 (734)
.... ..++ .....|.++++. +.+||++....+.|..++..+++. +..+.
T Consensus 160 ~~g~~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 160 ADGVLFDTGQEFI---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp TTCCEEEEEEEEE---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred CCCcEeecCCccc---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence 4322 1122 223568899984 457999999989999999888887 55554
No 97
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.19 E-value=1.5e-12 Score=125.11 Aligned_cols=106 Identities=23% Similarity=0.375 Sum_probs=85.1
Q ss_pred CCCCCCcCCCCCCCCCceec--CCCceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCC
Q psy8875 43 TSPTVYWRSKPCRNSTMFRC--TGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPD 120 (734)
Q Consensus 43 ~~~~~c~~~~~C~~~~~f~C--~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~d 120 (734)
.++.+| .+|+ +.+|+| .+|+|||..|+|||..||.|||||.+|...+|.+.+|+|. +.. ..
T Consensus 47 sDE~~C---~~C~-~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c~-------~~~------~~ 109 (215)
T 2gtl_O 47 VEELED---PSCD-EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGD-------VCF------DH 109 (215)
T ss_dssp HHHHSC---CSSC-TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEEE-------EEE------ES
T ss_pred hhhccC---CCCC-CcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCCceeee-------ECC------Cc
Confidence 345566 3698 899999 7999999999999999999999999999889999999883 211 23
Q ss_pred CCCCCCcCCCCCCCcc--cccCcCCCC---ceEe-----------CccccCCCCCCCCCCCCCC
Q psy8875 121 CSDGSDEKSCKNRTCQ--ASEFRCGNN---RCIP-----------NHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 121 C~dg~de~~C~~~~C~--~~~f~C~~g---~Ci~-----------~~~~Cdg~~dC~dgsde~~ 168 (734)
|.+..++..|. ..|. ..+|.|.++ .||. .+|.|||..+ ++++|..
T Consensus 110 C~~~~~~~~c~-~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~ 170 (215)
T 2gtl_O 110 CTKRRPEHMTL-AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLT 170 (215)
T ss_dssp SCSSCCSEEEE-EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEE
T ss_pred ccCCCCCCcee-eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceee
Confidence 67777887773 3344 467889876 5888 8999999999 5888876
No 98
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.14 E-value=6.3e-12 Score=102.14 Aligned_cols=67 Identities=25% Similarity=0.588 Sum_probs=56.3
Q ss_pred CCcCCCCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccc---cc-cCcccCCceeccCCCCeeeCCCCCC
Q psy8875 47 VYWRSKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKK---CQ-KRICGQEEFTCRSSPGECVPLTWMC 115 (734)
Q Consensus 47 ~c~~~~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~---C~-~~~C~~~~~~C~~~~~~Ci~~~~~C 115 (734)
+| ...+|+ +++|+|. +|+|||..|+|||+.||.|||||.. |. ..+|.+.+|+|.+..++||+..+..
T Consensus 3 ~C-~~~~C~-~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~g 74 (80)
T 2kny_A 3 KL-EGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRK 74 (80)
T ss_dssp SC-SSCCCS-SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred CC-CCCCCC-CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHH
Confidence 46 567898 8999998 6899999999999999999999984 65 3689999999987334799887654
No 99
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=99.14 E-value=2.2e-11 Score=112.59 Aligned_cols=95 Identities=28% Similarity=0.687 Sum_probs=75.0
Q ss_pred CCCCCCCCC-------CCCc-cccccccCC-CCCc--CccccCCCcceeecCCCcEecCC--------CCccccccCcCC
Q psy8875 375 DCPLMQDED-------PTKC-GVDECAKDN-GGCL--HKCVDLPVGYMCECNEGYKLSSN--------RHTCIDIDECET 435 (734)
Q Consensus 375 ~C~~g~d~~-------~~~C-~~~eC~~~~-~~C~--~~C~~~~~~~~C~C~~G~~l~~~--------~~~C~~~~eC~~ 435 (734)
.|+.||.+. ...| +++||.... ..|. +.|++++++|+|.|++||.+... +..|+++|||..
T Consensus 22 ~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~ 101 (143)
T 2bou_A 22 RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101 (143)
T ss_dssp EECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHH
T ss_pred eCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccCccC
Confidence 666666542 3468 799998653 2575 58999999999999999998744 458999999975
Q ss_pred -CCCcc--cceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875 436 -PGSCS--QICLNEKGGFKCECVAGYIKDPHHPTQCKA 470 (734)
Q Consensus 436 -~~~C~--~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~ 470 (734)
..+|. ++|+|+.++|+|.|++||.+....+. |..
T Consensus 102 ~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~-C~~ 138 (143)
T 2bou_A 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPN-NQK 138 (143)
T ss_dssp TCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCS-SBT
T ss_pred cCCCCCCCCEEECCCCCEEeeCCCCcccCCCCcc-Ccc
Confidence 46786 69999999999999999999877554 654
No 100
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=1.6e-08 Score=106.87 Aligned_cols=209 Identities=11% Similarity=0.115 Sum_probs=141.8
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIA 549 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p 549 (734)
.++|++ ...|+++++++.....+. ....+.+|++++ .+.+|++. ...|+++++.++... .+.... ...|
T Consensus 62 ~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~-dg~l~v~~--~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~ 136 (326)
T 2ghs_A 62 TAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKIS-DSKQLIAS--DDGLFLRDTATGVLT-LHAELESDLPGNRS 136 (326)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEE-TTEEEEEE--TTEEEEEETTTCCEE-EEECSSTTCTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeC-CCeEEEEE--CCCEEEEECCCCcEE-EEeeCCCCCCCCCC
Confidence 455554 457888888776554432 235688899886 46777765 345999998755433 332211 2357
Q ss_pred cceeeeccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--
Q psy8875 550 DGLAVDWIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-- 621 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-- 621 (734)
.++++|+ .++||+++.. .+.|++++ +|+... +. ..+..|.+|++++....|||++.. ...|++.+++
T Consensus 137 ~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~~-~~~~~~~~i~~s~dg~~lyv~~~~-~~~I~~~d~~~~ 211 (326)
T 2ghs_A 137 NDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTK-VNRLMRVPLDAR 211 (326)
T ss_dssp EEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETT-TCEEEEEEBCTT
T ss_pred CCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-ee-CCCcccCCeEEcCCCCEEEEEECC-CCEEEEEEcccc
Confidence 8899996 5678888753 36788888 655433 32 345679999999988889999854 4789999875
Q ss_pred -C-C--ceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCEEE
Q psy8875 622 -G-S--HRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWLY 692 (734)
Q Consensus 622 -G-~--~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~ly 692 (734)
| . .++++... ....|.+|++| ..++||++....+.|.+++.+|...+.+.. ....|.++++. .+.||
T Consensus 212 ~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~~g~~~~~i~~---~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 212 TGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEV---PGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp TCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEEC---SCSBEEEEEEESTTSCEEE
T ss_pred cCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECCCCCEEEEEEC---CCCCcEEEEEecCCCCEEE
Confidence 4 2 22334331 24569999999 566899998877899999997765555432 13468888885 25899
Q ss_pred EEeCCC
Q psy8875 693 WSDWQQ 698 (734)
Q Consensus 693 wtd~~~ 698 (734)
++....
T Consensus 288 vt~~~~ 293 (326)
T 2ghs_A 288 VTSARE 293 (326)
T ss_dssp EEEBCT
T ss_pred EEecCC
Confidence 987665
No 101
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.11 E-value=3.5e-11 Score=82.51 Aligned_cols=36 Identities=50% Similarity=1.200 Sum_probs=33.9
Q ss_pred CCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
+|+ ..+|+|.+|+||+..|+|||..||.|||||.+|
T Consensus 1 ~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 1 PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCC-TTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCC-CCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence 476 899999999999999999999999999999987
No 102
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.11 E-value=9.2e-12 Score=101.18 Aligned_cols=67 Identities=33% Similarity=0.731 Sum_probs=57.7
Q ss_pred cccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCC---CC-CCCcccccCcCCC--CceEeCcccc
Q psy8875 87 KKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKS---CK-NRTCQASEFRCGN--NRCIPNHWQC 154 (734)
Q Consensus 87 ~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~---C~-~~~C~~~~f~C~~--g~Ci~~~~~C 154 (734)
.+|....|.+.+|+|.++ |+|||..|+|||..||.|||||.+ |. ..+|...+|+|.+ +.||+...+.
T Consensus 2 ~~C~~~~C~~~~f~C~~~-g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~g 74 (80)
T 2kny_A 2 SKLEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRK 74 (80)
T ss_dssp CSCSSCCCSSSEEECTTS-SCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred CCCCCCCCCCCceecCCC-CeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHH
Confidence 357777899999999864 799999999999999999999984 75 4689999999998 7899877653
No 103
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.10 E-value=1.5e-08 Score=102.53 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=123.4
Q ss_pred cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE--EEEeCCC-CCc-----ccee
Q psy8875 483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT--VVIEEDK-TIA-----DGLA 553 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~--~~~~~~~-~~p-----~glA 553 (734)
..|.++++.+.....+ +.+...+.||+++. .+.+++++...++|+.+.++...... ..+...+ ..| +|||
T Consensus 49 ~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA 127 (255)
T 3qqz_A 49 AAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLA 127 (255)
T ss_dssp EEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEE
T ss_pred CeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEE
Confidence 4688888885544444 24557899999984 56777788788889888876443211 1111111 234 8999
Q ss_pred eeccCCcEEEEeCCCC-eEEEEe--CCCCceEEEEc------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 554 VDWIYSHIYWTDAHKN-TIELAN--FEGTMRKVLVR------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 554 vD~~~~~lY~td~~~~-~I~~~~--ldG~~~~~l~~------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
+|+.+++||.+..... .|+..+ +.+...+++-. ..+..+.+|++||.++.||+... ....|..++.+|..
T Consensus 128 ~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-~s~~L~~~d~~g~~ 206 (255)
T 3qqz_A 128 YSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-ESRALQEVTLVGEV 206 (255)
T ss_dssp EETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-TTTEEEEECTTCCE
T ss_pred EeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-CCCeEEEEcCCCCE
Confidence 9999999999877644 677776 22222333311 24668999999999999999985 45899999999985
Q ss_pred eEEEEEc--------CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 625 RNMVIVS--------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 625 ~~~lv~~--------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
+..+... .+.+|.|||+|+ +++||++.- -+.++++..++
T Consensus 207 ~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE-~n~~y~f~~~~ 253 (255)
T 3qqz_A 207 IGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSE-PNRFYRFTPQS 253 (255)
T ss_dssp EEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEET-TTEEEEEEC--
T ss_pred EEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcC-CceEEEEEecC
Confidence 5544332 257899999995 668999954 46888887654
No 104
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.10 E-value=5.4e-08 Score=101.89 Aligned_cols=225 Identities=8% Similarity=-0.032 Sum_probs=149.7
Q ss_pred ccceEEeecCCCceEEEecCCc---ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC----CCccceee
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTK---SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK----TIADGLAV 554 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~---~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~----~~p~glAv 554 (734)
...|+.+++........+.... .+.++++++..+.||++....+.|+.+++..+.....+..... ..|.++++
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL 89 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEE
Confidence 4567777776555444333333 5888999988889999998888999999875544332221111 16889999
Q ss_pred eccCCcEEEEeC-----------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 555 DWIYSHIYWTDA-----------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 555 D~~~~~lY~td~-----------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
++.++.||++.. ..+.|.+.++.+......+.. ...|.+++++|...+||+++ ..|...++...
T Consensus 90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~----~~i~~~d~~~~ 164 (337)
T 1pby_B 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG----RDLHVMDPEAG 164 (337)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES----SSEEEEETTTT
T ss_pred CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC----CeEEEEECCCC
Confidence 988889999962 248899999976544333322 45789999999888888874 23443333221
Q ss_pred ceEE------------------------------------------------------EEE------------cCCCCce
Q psy8875 624 HRNM------------------------------------------------------VIV------------SDIKWPN 637 (734)
Q Consensus 624 ~~~~------------------------------------------------------lv~------------~~l~~P~ 637 (734)
.... ++. .....|.
T Consensus 165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 244 (337)
T 1pby_B 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence 1110 000 1113466
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+|++++.+++||.++ +.|..+++........+.. ...|.++++. +.+||++ ...+.|..++..+++.+..+
T Consensus 245 ~~~~s~dg~~l~~~~---~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 245 STAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLG-GALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEE-SBSSEEEEEETTTCCEEEEE
T ss_pred eEEECCCCCEEEEeC---CeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEE-cCCCcEEEEECcCCcEEEEE
Confidence 789988888899883 7899999876554433332 2468889884 4578887 55688999998888887777
Q ss_pred ecc
Q psy8875 716 TGV 718 (734)
Q Consensus 716 ~~~ 718 (734)
...
T Consensus 318 ~~~ 320 (337)
T 1pby_B 318 DLP 320 (337)
T ss_dssp ECG
T ss_pred EcC
Confidence 543
No 105
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=88.29 Aligned_cols=39 Identities=46% Similarity=1.105 Sum_probs=36.7
Q ss_pred CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
+.+|+ +.+|+|.+|+||+..|+|||+.||.|||||.+|.
T Consensus 4 p~~C~-~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~ 42 (52)
T 2m0p_A 4 PASCL-DTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42 (52)
T ss_dssp CCSSC-SSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred CCCCC-CCceECCCCCEEecCccCCCCCCCCCCCccccch
Confidence 56898 8999999999999999999999999999999885
No 106
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=85.04 Aligned_cols=40 Identities=43% Similarity=1.036 Sum_probs=34.0
Q ss_pred CCCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875 50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 50 ~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
+...|+ ..+|+|.+|+||+..|+|||+.||.|||||.+|.
T Consensus 4 ~~~~C~-~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 4 PAKECE-KDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp ----CC-TTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCC-CCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence 356788 8999999999999999999999999999999884
No 107
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.06 E-value=9e-08 Score=102.08 Aligned_cols=222 Identities=10% Similarity=0.067 Sum_probs=140.3
Q ss_pred EEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeC---CCcEEEEecCC--CCceEEE-EeCCCCCccceeeeccC
Q psy8875 486 RKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDE--GSERTVV-IEEDKTIADGLAVDWIY 558 (734)
Q Consensus 486 ~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~--g~~~~~~-~~~~~~~p~glAvD~~~ 558 (734)
++++......+.+.. ....|..|+|++..+.||.++.. .+.|....++. |....+. +......|..|++ .+
T Consensus 32 ~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg 109 (361)
T 3scy_A 32 FRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG 109 (361)
T ss_dssp EEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS
T ss_pred EEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC
Confidence 334444444433221 56678889999988889999873 45665544443 3222221 2223457888888 47
Q ss_pred CcEEEEeCCCCeEEEEeCCC--Cce---EEEEc-C--------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 559 SHIYWTDAHKNTIELANFEG--TMR---KVLVR-S--------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 559 ~~lY~td~~~~~I~~~~ldG--~~~---~~l~~-~--------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
+.||+++...+.|.+.+++. ... ..+.. . ...+|.+++++|...+||+++.+. ..|...+++...
T Consensus 110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~v~v~~~~~~~ 188 (361)
T 3scy_A 110 KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT-DQIHKFNINPNA 188 (361)
T ss_dssp SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTC
T ss_pred CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC-CEEEEEEEcCCC
Confidence 78999998888999888753 211 11111 1 123457899999888899999653 566666555322
Q ss_pred -------e------EEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc---CCCCCCCCeEEEE--
Q psy8875 625 -------R------NMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY---SPQTLSHPFSIST-- 686 (734)
Q Consensus 625 -------~------~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~---~~~~~~~P~gl~v-- 686 (734)
. ..+.......|+++++++.+++||+++...+.|..++++....+.+.. .......|.+|++
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence 1 122223345689999998888999999888899999987544333321 1222345778888
Q ss_pred ECCEEEEEeCC-CCceEEEec--cCCC
Q psy8875 687 FEDWLYWSDWQ-QKAIYKANK--FTGD 710 (734)
Q Consensus 687 ~~~~lywtd~~-~~~v~~~~~--~~G~ 710 (734)
.+.+||+++.. .+.|..++. .+|+
T Consensus 269 dg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 269 DGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp TSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred CCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 46689999987 666555443 4555
No 108
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.06 E-value=8.9e-11 Score=83.35 Aligned_cols=39 Identities=31% Similarity=0.838 Sum_probs=36.1
Q ss_pred CCCCCCCCCceecCC-CceecCcCccCCCCCCCCCCccccc
Q psy8875 50 RSKPCRNSTMFRCTG-GMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 50 ~~~~C~~~~~f~C~~-g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
....|+ ..+|+|.+ |+||+..|+|||+.||.|||||.+|
T Consensus 3 ~~~~C~-~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 3 QDVKCS-LGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp CSCSCC-TTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred cCCCCC-CCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 356788 89999999 9999999999999999999999987
No 109
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.06 E-value=7.4e-11 Score=84.27 Aligned_cols=38 Identities=39% Similarity=0.952 Sum_probs=35.6
Q ss_pred CCCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
+.+|+ +.+|+|.+|+||+..|+|||+.||.|||||..|
T Consensus 3 ~~~C~-~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 3 PPQCQ-PGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTT-BTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCcCC-CCceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence 45787 899999999999999999999999999999987
No 110
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.05 E-value=1.4e-07 Score=101.74 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=142.0
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEEEeC---C---CCC
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVVIEE---D---KTI 548 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~~~~---~---~~~ 548 (734)
.|..+++........++....| +|++++..++||+++. ..+.|..+++........+... . ...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 5677777655544444544567 9999999999999984 2456888887643332222111 0 246
Q ss_pred ccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEE-EcCCCCCceeEEE-----------------------------
Q psy8875 549 ADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVL-VRSYLDEPRSLAL----------------------------- 597 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l-~~~~l~~P~~iav----------------------------- 597 (734)
|.++++++.++.||+++.. .+.|.+++ ........ +. .|..+.+
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~ 201 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA 201 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEE
Confidence 8999999999999999875 67898888 54432211 21 1111111
Q ss_pred -------------------eCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---------CCCCcee---EEEecCCC
Q psy8875 598 -------------------NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---------DIKWPNG---LTLDLVQR 646 (734)
Q Consensus 598 -------------------D~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---------~l~~P~g---lavD~~~~ 646 (734)
.+..+.+||+.. .+.|+++++.+...+++-.- ....|.| +++++.++
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcC--CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 112233333331 23556666554332221110 0113555 88998899
Q ss_pred eEEEEeC---------CCCeEEEEecCCCce-EEEEcCCCCCCCCeEEEEE--CC-EEEEEeCCCCceEEEeccCCCceE
Q psy8875 647 RLYWVDA---------KLNEISSCDYNGGNR-RLVLYSPQTLSHPFSISTF--ED-WLYWSDWQQKAIYKANKFTGDNLT 713 (734)
Q Consensus 647 ~LYw~D~---------~~~~I~~~~~dG~~~-~~i~~~~~~~~~P~gl~v~--~~-~lywtd~~~~~v~~~~~~~G~~~~ 713 (734)
+||++.. ..+.|+.+++..... +.|. ....|.+|++. +. .||.+.+..+.|..++..+++.+.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 9999853 245899999876544 3332 12368999994 55 688888888999999999998887
Q ss_pred EEecccccCCCccCC
Q psy8875 714 AITGVHQTHEPLNSP 728 (734)
Q Consensus 714 ~l~~~~~l~~P~~i~ 728 (734)
.+... -..|..+.
T Consensus 356 ~i~~v--G~~P~~~~ 368 (373)
T 2mad_H 356 STVEL--GSGPQVLS 368 (373)
T ss_pred eecCC--CCCCcEEE
Confidence 74322 24566553
No 111
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.04 E-value=1.3e-10 Score=82.05 Aligned_cols=38 Identities=47% Similarity=1.210 Sum_probs=34.7
Q ss_pred CCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875 52 KPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 52 ~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
.+|. ..+|+|. +|+||+..|+|||..||.|||||.+|.
T Consensus 2 ~~C~-~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 2 GGCH-TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp CCSS-TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred CCCC-CCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence 4687 8999998 499999999999999999999999885
No 112
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.04 E-value=3.3e-08 Score=100.50 Aligned_cols=182 Identities=12% Similarity=0.085 Sum_probs=130.9
Q ss_pred eeeeeec----cceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 476 SLLFARK----HDIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 476 ~l~~~~~----~~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
.||+++. ..|+++++........+. ....+.+++++ .++||++++..+.|+++++........ +..+ .|
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~-i~~g--~~ 107 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN-FTHQ--MK 107 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE-EECC--SS
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE-EECC--CC
Confidence 5666653 579999998766554433 34456778887 689999999999999999874433333 2222 46
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
.|+++.+.+++||+++ +.++|.+.+...... ..+... .+..|+++++. .|+||.+.|. ...|.++++....
T Consensus 108 ~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~-~~~V~vID~~tg~ 183 (266)
T 2iwa_A 108 DGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ-TDCIARISAKDGT 183 (266)
T ss_dssp SCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEEETTTCC
T ss_pred CeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC-CCeEEEEECCCCc
Confidence 6777777789999998 688999999876443 333221 23467888876 6899999876 4799999996544
Q ss_pred eEEEEE-cC------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 625 RNMVIV-SD------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 625 ~~~lv~-~~------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
....+. .. ...|+|||+|+.+++||++....++|+.+++...
T Consensus 184 V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 184 LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 333332 21 2468999999999999999999999999987654
No 113
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=99.03 E-value=4.7e-10 Score=126.35 Aligned_cols=87 Identities=30% Similarity=0.718 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCc-cccccccCCCCCcC-----ccccCCCcceee-cCCCcEecC-----------CCCccccccCcCC-
Q psy8875 375 DCPLMQDEDPTKC-GVDECAKDNGGCLH-----KCVDLPVGYMCE-CNEGYKLSS-----------NRHTCIDIDECET- 435 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~~-----~C~~~~~~~~C~-C~~G~~l~~-----------~~~~C~~~~eC~~- 435 (734)
.|+.||.+.+..| +++||...++.|.+ .|++++++|+|. |++||.+.. +++.|++++||..
T Consensus 29 ~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~ 108 (634)
T 1yo8_A 29 FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK 108 (634)
T ss_dssp CCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTT
T ss_pred cCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccccccccccccCCCcccccccccCC
Confidence 6888888766778 79999988777865 899999999999 999998753 5678999999986
Q ss_pred CCCcc--cceeccC----CceEEecCCCeeeC
Q psy8875 436 PGSCS--QICLNEK----GGFKCECVAGYIKD 461 (734)
Q Consensus 436 ~~~C~--~~C~n~~----g~~~C~C~~gy~~~ 461 (734)
+.+|. ++|+++. ++|+|.|++||.++
T Consensus 109 ~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~Gd 140 (634)
T 1yo8_A 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAGD 140 (634)
T ss_dssp CCCCCTTEEEEECCTTCSSSEEEEECTTEEES
T ss_pred CcccccCccccccccccccceeeeccCCcccc
Confidence 47896 5899999 99999999999984
No 114
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.03 E-value=2.1e-07 Score=105.59 Aligned_cols=239 Identities=8% Similarity=-0.019 Sum_probs=161.7
Q ss_pred cceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEec--CCCCceEEEEeCCCCCc
Q psy8875 474 HASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI--DEGSERTVVIEEDKTIA 549 (734)
Q Consensus 474 ~~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l--~~g~~~~~~~~~~~~~p 549 (734)
...+++++ .+.|..+++........+.....+.++++++..++||.++.. +.|..+++ ..+..... +. ....|
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~-i~-~g~~p 224 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAE-IK-IGIEA 224 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEE-EE-CCSEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEE-Ee-cCCCc
Confidence 33555555 356888887766554444433348899999999999999866 88999998 43322222 23 34579
Q ss_pred cceeeec----cCCcEEEEeCCCCeEEEEeCCCCceEEEEcC-C----------CCCceeEEEeCCCCeEEEEecCCCce
Q psy8875 550 DGLAVDW----IYSHIYWTDAHKNTIELANFEGTMRKVLVRS-Y----------LDEPRSLALNPIDGWMYWSDWGQNAK 614 (734)
Q Consensus 550 ~glAvD~----~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~-~----------l~~P~~iavD~~~g~LYwtd~~~~~~ 614 (734)
++|++++ .++.||+++...+.|.+.+.........+.. . ...+.+|++.+..+.+|++... .++
T Consensus 225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-~g~ 303 (543)
T 1nir_A 225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGK 303 (543)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTE
T ss_pred ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-CCe
Confidence 9999998 8899999998788999988754433333321 1 1257789999988888888754 578
Q ss_pred EEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE-E--CC
Q psy8875 615 IERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST-F--ED 689 (734)
Q Consensus 615 I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v-~--~~ 689 (734)
|...++... ...+.....-.+|.++++++.+++||.+....++|..+++........+.. ...+|| .++.+ . .+
T Consensus 304 i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-g~~ph~g~g~~~~~p~~g 382 (543)
T 1nir_A 304 VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV-GKTPHPGRGANFVHPKYG 382 (543)
T ss_dssp EEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSBCCTTCEEEEETTTE
T ss_pred EEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc-CCCCCCCCCcccCCCCCc
Confidence 998887542 222111123467999999998889999988888999999875544433332 234455 34444 2 47
Q ss_pred EEEEEeC-CCCceEEEeccC-------CCceEEEec
Q psy8875 690 WLYWSDW-QQKAIYKANKFT-------GDNLTAITG 717 (734)
Q Consensus 690 ~lywtd~-~~~~v~~~~~~~-------G~~~~~l~~ 717 (734)
.+|++.. +.+.|..++..+ ++.++.|..
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 8888874 567787787766 555666653
No 115
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.01 E-value=1.1e-07 Score=101.85 Aligned_cols=243 Identities=12% Similarity=0.067 Sum_probs=153.6
Q ss_pred eeeeeec------cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEE
Q psy8875 476 SLLFARK------HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTV 540 (734)
Q Consensus 476 ~l~~~~~------~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~ 540 (734)
.+|+++. ..|..|++........++....|. |++++..++||+++. ..+.|..+++........
T Consensus 46 ~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~ 124 (386)
T 3sjl_D 46 RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD 124 (386)
T ss_dssp EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEE
Confidence 4555553 368888887766655555555675 999999999999984 245688888875443333
Q ss_pred E-EeCC-----CCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceE-EE---------------------------E
Q psy8875 541 V-IEED-----KTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRK-VL---------------------------V 585 (734)
Q Consensus 541 ~-~~~~-----~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~-~l---------------------------~ 585 (734)
+ +..+ ...|.++++++.+++||+++.. .+.|.++++...... .| +
T Consensus 125 I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v 204 (386)
T 3sjl_D 125 IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKV 204 (386)
T ss_dssp EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred EECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEE
Confidence 3 2210 2379999999999999999864 566776665432211 11 0
Q ss_pred -cCC----------CC----Ccee--EEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---------CCCce--
Q psy8875 586 -RSY----------LD----EPRS--LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---------IKWPN-- 637 (734)
Q Consensus 586 -~~~----------l~----~P~~--iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---------l~~P~-- 637 (734)
... .. .|.. .+++...|+++|... .++|+.+++.+...+++-.-. --.|.
T Consensus 205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred ECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 000 00 1111 234445666666543 367888888766544321100 00133
Q ss_pred -eEEEecCCCeEEEEeC---------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECC-EEEEEeCCCCceEEE
Q psy8875 638 -GLTLDLVQRRLYWVDA---------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FED-WLYWSDWQQKAIYKA 704 (734)
Q Consensus 638 -glavD~~~~~LYw~D~---------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~-~lywtd~~~~~v~~~ 704 (734)
.+++++..++||++.. ..++|+.+|+....+..-+.. ...|.+|++ .+. +||.+++..+.|..+
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsVi 359 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIH 359 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEE
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEE
Confidence 3888999999999853 135899999866554333321 235778998 333 689999999999999
Q ss_pred eccCCCceEEEecccccCCCccC
Q psy8875 705 NKFTGDNLTAITGVHQTHEPLNS 727 (734)
Q Consensus 705 ~~~~G~~~~~l~~~~~l~~P~~i 727 (734)
+..+++.+..+.. ..+|..+
T Consensus 360 D~~t~k~~~~i~~---~~~p~~l 379 (386)
T 3sjl_D 360 DAESGEELRSVNQ---LGHGPQV 379 (386)
T ss_dssp ETTTCCEEEEECC---CCSSCCE
T ss_pred ECCCCcEEEEecC---CCCCcee
Confidence 9999987777754 4567655
No 116
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=99.01 E-value=9.3e-09 Score=113.73 Aligned_cols=162 Identities=19% Similarity=0.232 Sum_probs=116.7
Q ss_pred CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCC------CCCccceeeecc---CCcE
Q psy8875 492 HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEED------KTIADGLAVDWI---YSHI 561 (734)
Q Consensus 492 ~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~------~~~p~glAvD~~---~~~l 561 (734)
+-..+.++..+..|.+|++++ .++||+++...++|+++....|....+. +... ...+.|||+++. ++.|
T Consensus 16 gf~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 16 NFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp TSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CeEEEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 345566777899999999997 5789999977678999986544433222 1211 233459999986 8999
Q ss_pred EEEeCC------------CCeEEEEeCCCC-----ceEEEEc----CCCCCceeEEEeCCCCeEEEEecC----------
Q psy8875 562 YWTDAH------------KNTIELANFEGT-----MRKVLVR----SYLDEPRSLALNPIDGWMYWSDWG---------- 610 (734)
Q Consensus 562 Y~td~~------------~~~I~~~~ldG~-----~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~---------- 610 (734)
|++... ..+|.++.+++. ..++|+. .....+.+|+++| .|+||++...
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~ 173 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLF 173 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTT
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccc
Confidence 999863 357888887542 2344442 2346799999998 6799999521
Q ss_pred ---------------------CCceEEEeccCCCc----------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 611 ---------------------QNAKIERAGMDGSH----------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 611 ---------------------~~~~I~~~~ldG~~----------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
..++|.|++.||+. +..++...+..|.||++|+ .++||++|.+.+
T Consensus 174 ~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~~ 249 (454)
T 1cru_A 174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPN 249 (454)
T ss_dssp SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred cccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCCC
Confidence 13689999999982 2335667889999999997 799999996544
No 117
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=99.01 E-value=5.1e-10 Score=102.27 Aligned_cols=82 Identities=27% Similarity=0.635 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc-cccCcCCCCCcc--cceeccCCceE
Q psy8875 375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI-DIDECETPGSCS--QICLNEKGGFK 451 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~-~~~eC~~~~~C~--~~C~n~~g~~~ 451 (734)
.|++||.+....-++++|...+....+.|++++++|+|.|++||. +..|+ ++++|.. .+|. ++|+++.++|+
T Consensus 31 ~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~C~~-~~C~~~g~C~~~~g~~~ 105 (135)
T 2vj3_A 31 QCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYE----GVHCEVNTDECAS-SPCLHNGRCLDKINEFQ 105 (135)
T ss_dssp ECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEE----SSSSCEECCTTTT-CCSTTTCEEEECSSCEE
T ss_pred ECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCc----CCcceecCCcccC-CCcCCCCEeECCCCCeE
Confidence 455555544322257788765444456899999999999999995 67886 7899974 4675 48999999999
Q ss_pred EecCCCeeeC
Q psy8875 452 CECVAGYIKD 461 (734)
Q Consensus 452 C~C~~gy~~~ 461 (734)
|.|++||.+.
T Consensus 106 C~C~~G~~G~ 115 (135)
T 2vj3_A 106 CECPTGFTGH 115 (135)
T ss_dssp EECCTTEESS
T ss_pred EECCCCCcCC
Confidence 9999999874
No 118
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.00 E-value=1.9e-07 Score=100.25 Aligned_cols=236 Identities=10% Similarity=0.005 Sum_probs=141.1
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEEEeC-----CCCC
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVVIEE-----DKTI 548 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~~~~-----~~~~ 548 (734)
..|+.+++........++....| +|++++..++||+++. ..+.|..+++..+.....+... ....
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence 36788887655554444555677 9999999999999985 2346888887644433332211 1246
Q ss_pred ccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEE-EcCCC-----CC----ceeEEEeCCCCeEEEEecCC------
Q psy8875 549 ADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVL-VRSYL-----DE----PRSLALNPIDGWMYWSDWGQ------ 611 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l-~~~~l-----~~----P~~iavD~~~g~LYwtd~~~------ 611 (734)
|.+|++++.++.||+++.. .+.|.+.++........ +.... .. +.-+++.+....++|.-...
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 9999999999999999875 67898888865432211 11100 11 22244444333333332110
Q ss_pred ------------------------------CceEEEeccCCCceEEEEEcC--------C-CCcee---EEEecCCCeEE
Q psy8875 612 ------------------------------NAKIERAGMDGSHRNMVIVSD--------I-KWPNG---LTLDLVQRRLY 649 (734)
Q Consensus 612 ------------------------------~~~I~~~~ldG~~~~~lv~~~--------l-~~P~g---lavD~~~~~LY 649 (734)
.++|+.+++.+....++-.-. . ..|.| +++++.+++||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY 269 (361)
T ss_dssp EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence 122344444332222111100 0 12444 89998899999
Q ss_pred EEeC----------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCC--CceEEE
Q psy8875 650 WVDA----------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTG--DNLTAI 715 (734)
Q Consensus 650 w~D~----------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G--~~~~~l 715 (734)
++.. ..+.|+.+++........+... . |.+|++ .+.+||.+.+ +.|..++..+| +.+..+
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEE
T ss_pred EEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEe
Confidence 9853 1358999997655443333321 2 999999 4678999886 88999998888 666665
Q ss_pred ecccccCCCccC
Q psy8875 716 TGVHQTHEPLNS 727 (734)
Q Consensus 716 ~~~~~l~~P~~i 727 (734)
... -..|..+
T Consensus 344 ~~~--G~~P~~~ 353 (361)
T 2oiz_A 344 EGA--AEASLQV 353 (361)
T ss_dssp TTS--CSSEEEE
T ss_pred ccC--CCCcEEE
Confidence 322 3456555
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.00 E-value=2.2e-07 Score=101.33 Aligned_cols=236 Identities=12% Similarity=0.107 Sum_probs=166.2
Q ss_pred ceeeeee--ccceEEeecCCCceEEEec------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC
Q psy8875 475 ASLLFAR--KHDIRKISLDHHEMTAIVN------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK 546 (734)
Q Consensus 475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~ 546 (734)
..++++. ...|+..++.......+.. ....+.++++.+ .+.+|++....+.|+..++..+.....+ ....
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~ 211 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATV-DLTG 211 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSS
T ss_pred CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEE-cCCC
Confidence 3455544 3458888887655544322 233567788854 6788899888899999998855443333 3345
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC------CceEEEecc
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ------NAKIERAGM 620 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~------~~~I~~~~l 620 (734)
..|.++++++.++.||++....+.|.+.++........+ .....|.+++++|...+||.+..+. .+.|...++
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 678899999988899999988899999998755443333 3345689999999888888887531 357888888
Q ss_pred CCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCC
Q psy8875 621 DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQ 698 (734)
Q Consensus 621 dG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~ 698 (734)
........+. ....|.++++++.+++||++....+.|..+++++......+. ....|.+|++. +.+||.+....
T Consensus 291 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 291 DKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp TTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCC
Confidence 6544333321 123688999998888999999889999999988655444443 23567888884 45788888764
Q ss_pred --------------CceEEEeccCCCceEEEec
Q psy8875 699 --------------KAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 699 --------------~~v~~~~~~~G~~~~~l~~ 717 (734)
+.|+.++..+++.+..+..
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred CccccccccccccceEEEEEECCCCcEEEEecC
Confidence 3788888888877766653
No 120
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.98 E-value=2e-10 Score=83.66 Aligned_cols=39 Identities=44% Similarity=0.968 Sum_probs=36.4
Q ss_pred CCCCCCCceecCCC-ceecCcCccCCCCCCCCCCccccccc
Q psy8875 52 KPCRNSTMFRCTGG-MCIPSTWVCDGQNDCPDGVDEKKCQK 91 (734)
Q Consensus 52 ~~C~~~~~f~C~~g-~Ci~~~~~cdg~~dC~dg~de~~C~~ 91 (734)
.+|. +.+|+|.+| +||+..|+|||+.||.|||||.+|..
T Consensus 5 ~~C~-~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~ 44 (48)
T 2i1p_A 5 LNCT-SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44 (48)
T ss_dssp CCCC-SSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred CCCC-CCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence 6898 899999999 89999999999999999999999853
No 121
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.98 E-value=2e-10 Score=83.34 Aligned_cols=38 Identities=47% Similarity=1.148 Sum_probs=34.3
Q ss_pred CCCCCCCCceecC-----CCceecCcCccCCCCCCCCCCccccc
Q psy8875 51 SKPCRNSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 51 ~~~C~~~~~f~C~-----~g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
..+|+ +.+|+|. +|+|||..|+|||..||.|||||.+|
T Consensus 4 ~~~C~-~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 4 FGSCP-PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp --CCS-TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCCC-CCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 45788 8999998 79999999999999999999999988
No 122
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.97 E-value=4.2e-08 Score=105.13 Aligned_cols=231 Identities=5% Similarity=-0.106 Sum_probs=148.5
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEEEeC-C-----CCC
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVVIEE-D-----KTI 548 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~~~~-~-----~~~ 548 (734)
.|..|+++.......++....| ++++++..++||+++. ..+.|..+++..+.....+.-. . ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 6677887776665555555678 8999999999999984 3567999998865544333221 1 257
Q ss_pred ccceeeeccCCcEEEEeCC-CCeEEE--EeCCCCceEEEEcC----------------------------C---------
Q psy8875 549 ADGLAVDWIYSHIYWTDAH-KNTIEL--ANFEGTMRKVLVRS----------------------------Y--------- 588 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~-~~~I~~--~~ldG~~~~~l~~~----------------------------~--------- 588 (734)
|.+|++++.++.||+++.. ...|.+ .++.. ...+-.. .
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 9999999999999999875 466766 54432 1111100 0
Q ss_pred ---------CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---------CCCcee---EEEecCCCe
Q psy8875 589 ---------LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---------IKWPNG---LTLDLVQRR 647 (734)
Q Consensus 589 ---------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---------l~~P~g---lavD~~~~~ 647 (734)
...|. + .+..+.+||+.. +.|..+++.+...+++..-. ...|.| +++++.+++
T Consensus 204 ~~~t~~i~vg~~P~--~-~~~~~~~~~vs~---~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 204 AQCTGAQNCSSQAA--Q-ANYPGMLVWAVA---SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCSCTTSCBCSCCE--E-ETTTTEEEECBS---SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEeeeeeeCCCCcc--c-cccCCEEEEEcC---CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 01222 2 344566677763 56777777654444322111 123566 889999999
Q ss_pred EEEEeC---C-----CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeC-CCCceEEEeccCCCceEEEe
Q psy8875 648 LYWVDA---K-----LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDW-QQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 648 LYw~D~---~-----~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~-~~~~v~~~~~~~G~~~~~l~ 716 (734)
||++.. + .+.+..+|+....+..-+. ....|.+|++. +.+||++.. ..+.|..++..+++.++.|.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~---vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEE---CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 999864 2 2456677765543222111 12369999994 456999998 78999999998888777765
Q ss_pred cccccCCCccCCC
Q psy8875 717 GVHQTHEPLNSPG 729 (734)
Q Consensus 717 ~~~~l~~P~~i~~ 729 (734)
. ...|.+++.
T Consensus 355 v---g~~P~~i~~ 364 (368)
T 1mda_H 355 L---DKGPESLSV 364 (368)
T ss_dssp C---CSCCCEEEC
T ss_pred C---CCCCCEEEe
Confidence 3 456666643
No 123
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.97 E-value=1.3e-07 Score=99.50 Aligned_cols=222 Identities=9% Similarity=0.006 Sum_probs=143.2
Q ss_pred ccceEEeecCCCceEEEecCCc--ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-----CCCccceee
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTK--SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED-----KTIADGLAV 554 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~--~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-----~~~p~glAv 554 (734)
...|+.+++........+.... .+.++++++..+.+|++....+.|+.+++..+.....+.... ...|.++++
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 99 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE
Confidence 5678888887655544433333 688899998788899998888899999987544332222111 233889999
Q ss_pred eccCCcEEEEeCC-----------CCeEEEEeCCCCc-eE--EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875 555 DWIYSHIYWTDAH-----------KNTIELANFEGTM-RK--VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM 620 (734)
Q Consensus 555 D~~~~~lY~td~~-----------~~~I~~~~ldG~~-~~--~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l 620 (734)
++.++.||++... .+.|.+.++.... .+ ... .....+.+++++|... ||++. ..|.+.++
T Consensus 100 spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~----~~i~~~d~ 173 (349)
T 1jmx_B 100 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAG----PDIYKMDV 173 (349)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEES----SSEEEECT
T ss_pred CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEcc----CcEEEEeC
Confidence 9988899999854 5789999986521 11 112 1223578889998655 88754 23666665
Q ss_pred CCCceEEEEEcC--------------------------------------------------------------------
Q psy8875 621 DGSHRNMVIVSD-------------------------------------------------------------------- 632 (734)
Q Consensus 621 dG~~~~~lv~~~-------------------------------------------------------------------- 632 (734)
........+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
T 1jmx_B 174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 253 (349)
T ss_dssp TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence 432221111111
Q ss_pred CCCceeEEEec-CCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCC
Q psy8875 633 IKWPNGLTLDL-VQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 633 l~~P~glavD~-~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G 709 (734)
-..|.++++++ .+++||++ .+.|..+++........+.. ...|.++++. +++||.+ ...+.|..++..++
T Consensus 254 ~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 254 TELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTL 326 (349)
T ss_dssp SSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTT
T ss_pred CCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcC---CCCccceEECCCCCEEEEe-cCCCeEEEEecccc
Confidence 01355667777 77788888 56899999876554333322 2457888884 4678875 44588988888888
Q ss_pred CceEEEe
Q psy8875 710 DNLTAIT 716 (734)
Q Consensus 710 ~~~~~l~ 716 (734)
+.+..+.
T Consensus 327 ~~~~~~~ 333 (349)
T 1jmx_B 327 EKVKNIK 333 (349)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 7766664
No 124
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=98.96 E-value=8.5e-11 Score=111.13 Aligned_cols=62 Identities=32% Similarity=0.744 Sum_probs=51.1
Q ss_pred CCCcceeecCC--CcEecCCCCccccccCcCC-CCCccc-ceeccCCceEEecCCCeeeCCCCCccc
Q psy8875 406 LPVGYMCECNE--GYKLSSNRHTCIDIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC 468 (734)
Q Consensus 406 ~~~~~~C~C~~--G~~l~~~~~~C~~~~eC~~-~~~C~~-~C~n~~g~~~C~C~~gy~~~~~~~t~C 468 (734)
..++|+|.|++ ||.+..+++.|++||||+. +++|.+ +|+|+.++|+|.|++||.+..++++ |
T Consensus 96 ~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~-C 161 (162)
T 1uzk_A 96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRV-C 161 (162)
T ss_dssp TSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCB-B
T ss_pred CCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCc-c
Confidence 34567777776 7888777789999999975 467874 9999999999999999999887665 5
No 125
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.96 E-value=4.4e-08 Score=101.67 Aligned_cols=165 Identities=11% Similarity=-0.033 Sum_probs=120.0
Q ss_pred EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC-------CCceeEEE---eCCCCeEEE-Ee
Q psy8875 540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL-------DEPRSLAL---NPIDGWMYW-SD 608 (734)
Q Consensus 540 ~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l-------~~P~~iav---D~~~g~LYw-td 608 (734)
+.+......|++++.|...+.+|+++..+++|.++++++.....+....+ ..|.||.+ |+. ++|++ ++
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~ 84 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMK 84 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEc
Confidence 33444556799999998899999999999999999998654433332332 25789999 787 88887 44
Q ss_pred cC-----------CCceEEEeccC----CCceEEEEEc------------CCCCceeEEEecCCCeEEEEeCCC-CeEEE
Q psy8875 609 WG-----------QNAKIERAGMD----GSHRNMVIVS------------DIKWPNGLTLDLVQRRLYWVDAKL-NEISS 660 (734)
Q Consensus 609 ~~-----------~~~~I~~~~ld----G~~~~~lv~~------------~l~~P~glavD~~~~~LYw~D~~~-~~I~~ 660 (734)
.+ ....|.+.+++ |.....+-.. ....+++|++| ..+++|++++.. +.|++
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEE
Confidence 21 13679999998 4443332211 22358999999 689999999988 99999
Q ss_pred EecCCCceEEEEcCC---CCCCCCeEEEEE--CCEEEEEeCCCCceEEEecc
Q psy8875 661 CDYNGGNRRLVLYSP---QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 661 ~~~dG~~~~~i~~~~---~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~ 707 (734)
++.+|+....+.... .....+.||++. +..|++++. .++|++++..
T Consensus 164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 999999766554321 112336799996 667888888 8999999865
No 126
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.96 E-value=2.7e-07 Score=98.88 Aligned_cols=210 Identities=11% Similarity=0.046 Sum_probs=131.3
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecC-CCCceEEEEeCCCCCccceeeeccCCcEE--EEe-------C----
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPID-EGSERTVVIEEDKTIADGLAVDWIYSHIY--WTD-------A---- 566 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~-~g~~~~~~~~~~~~~p~glAvD~~~~~lY--~td-------~---- 566 (734)
....|..|++++..+.||.++.. .|..++++ .|....+........|..+++++.++.|| .++ .
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34578899999988889988875 67766664 34332221111113488899998777533 343 1
Q ss_pred -CCCeEEEEeCC--CCceEEEEc---CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEE-EEEc--CCCC
Q psy8875 567 -HKNTIELANFE--GTMRKVLVR---SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNM-VIVS--DIKW 635 (734)
Q Consensus 567 -~~~~I~~~~ld--G~~~~~l~~---~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~-lv~~--~l~~ 635 (734)
..+.|.+.+++ |+....+.. .....|.+++++|...+||.++.+. ..|...+++ |....+ .+.. ....
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~g~~ 194 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA-NKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC-CEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence 35667776664 554333321 2456899999999888899998653 688888876 432211 1221 1456
Q ss_pred ceeEEEecCCCeEEEEeCCCCeEEEEecC---CCce---EEEEcCCCCC---C-------CCeEEE-E--ECCEEEEEeC
Q psy8875 636 PNGLTLDLVQRRLYWVDAKLNEISSCDYN---GGNR---RLVLYSPQTL---S-------HPFSIS-T--FEDWLYWSDW 696 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~~~~~I~~~~~d---G~~~---~~i~~~~~~~---~-------~P~gl~-v--~~~~lywtd~ 696 (734)
|.+|++++.+++||++....+.|..++++ |... ..+...+... . .|.+|+ + .+.+||+++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 99999999888999998877888877765 3321 1222111111 1 478888 7 4568999987
Q ss_pred CCC-----ceEEEecc-CCCceE
Q psy8875 697 QQK-----AIYKANKF-TGDNLT 713 (734)
Q Consensus 697 ~~~-----~v~~~~~~-~G~~~~ 713 (734)
+.+ .|..++.. +|+...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCCCCCCeEEEEEECCCCCEEE
Confidence 654 55555432 565443
No 127
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.96 E-value=3.4e-10 Score=82.83 Aligned_cols=39 Identities=41% Similarity=1.105 Sum_probs=35.9
Q ss_pred CCCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875 51 SKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 51 ~~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
..+|+ +.+|+|. +|+||+..|+|||+.||.|||||.+|.
T Consensus 4 ~~~C~-~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (50)
T 2knx_A 4 GKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43 (50)
T ss_dssp TCTTC-TTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred CCCCC-CCcEEcCCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence 56788 8999995 999999999999999999999999884
No 128
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.96 E-value=2.6e-10 Score=79.06 Aligned_cols=36 Identities=47% Similarity=1.177 Sum_probs=33.2
Q ss_pred CCCCCceecCC--CceecCcCccCCCCCCCCCCcccccc
Q psy8875 54 CRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 54 C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
|+ +.+|+|.+ |+|||..|+|||+.||.|||||.+|.
T Consensus 1 C~-~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CR-IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CC-TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CC-CCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 55 78999997 89999999999999999999999884
No 129
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=98.95 E-value=4e-10 Score=104.11 Aligned_cols=82 Identities=27% Similarity=0.583 Sum_probs=64.4
Q ss_pred Cc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCC-CCCcccce-eccCCceEEecCCCeeeCC
Q psy8875 386 KC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQIC-LNEKGGFKCECVAGYIKDP 462 (734)
Q Consensus 386 ~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~-~~~C~~~C-~n~~g~~~C~C~~gy~~~~ 462 (734)
.| ++|+|..++..-...|++++++|+|.|++||. ++.|.++|+|.. ++.|.++| +|+.|+|.|.|++||.+..
T Consensus 44 ~c~dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~----G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~ 119 (146)
T 1x7a_L 44 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAP 119 (146)
T ss_dssp ------CCSSCSSCTTCEEEECSSCEEEECCSSEE----STTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECT
T ss_pred cCCCcCcCCCCCCCCCCEeECCCCCEEEecCCCCc----CCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCC
Confidence 35 78899865433335899999999999999994 789999999986 46899999 9999999999999999987
Q ss_pred CCCccccccc
Q psy8875 463 HHPTQCKAAE 472 (734)
Q Consensus 463 ~~~t~C~~~~ 472 (734)
++++ |..+.
T Consensus 120 dG~~-C~~~~ 128 (146)
T 1x7a_L 120 DQKS-CKPAV 128 (146)
T ss_dssp TSSS-EEECS
T ss_pred CCCc-CCCCC
Confidence 7655 87643
No 130
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.95 E-value=2.5e-10 Score=81.48 Aligned_cols=37 Identities=51% Similarity=1.183 Sum_probs=34.7
Q ss_pred CCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875 52 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89 (734)
Q Consensus 52 ~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C 89 (734)
.+|+ +.+|+|.+|+|||..|+|||+.||.|||||.+|
T Consensus 3 ~~C~-~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 3 HSCS-STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSC-TTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCC-CCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence 4687 899999999999999999999999999999876
No 131
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=9.2e-08 Score=96.19 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=123.3
Q ss_pred eeeeeecc----ceEEeecCCCceEEEecCCcc--eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 476 SLLFARKH----DIRKISLDHHEMTAIVNSTKS--ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 476 ~l~~~~~~----~I~~i~l~~~~~~~l~~~~~~--~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
.||.+.+. .|+++++.......-+.-... ..||+++ .++||.+++..+.++++++........+-. .+
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~----~~ 127 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY----DG 127 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC----SS
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC----CC
Confidence 56666644 689999887665444332233 4667776 789999999999999999885544333322 13
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
.|.++.+.++.||.+|. .++|.+.+... +....+... .+..++.|.. ..|+||...|.. ..|.+++..-..
T Consensus 128 eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~~G~lyan~w~~-~~I~vIDp~tG~ 203 (262)
T 3nol_A 128 EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--VDGEIFANVWQT-NKIVRIDPETGK 203 (262)
T ss_dssp CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTS-SEEEEECTTTCB
T ss_pred CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--ECCEEEEEEccC-CeEEEEECCCCc
Confidence 44555555889999985 78999999874 333333321 2344555665 479999999864 699999985444
Q ss_pred eEEEEE-cC-----------CCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 625 RNMVIV-SD-----------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 625 ~~~lv~-~~-----------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
....+. .. ..-|||||+|+.+++||++--.-.+++.+.+.
T Consensus 204 V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 204 VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence 433333 21 23689999999999999999877888887763
No 132
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.94 E-value=2.5e-07 Score=98.21 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=107.8
Q ss_pred ccceEEeecCCC--ceEEEe-cC------CcceEEEeeecc---CCeEEEEEeCC--Cc--EEEEecCCCCceEEEE---
Q psy8875 482 KHDIRKISLDHH--EMTAIV-NS------TKSATAIDFVFR---TGMIFWSDISE--KK--IYKAPIDEGSERTVVI--- 542 (734)
Q Consensus 482 ~~~I~~i~l~~~--~~~~l~-~~------~~~~~~i~~d~~---~~~lyw~d~~~--~~--I~~~~l~~g~~~~~~~--- 542 (734)
...|++++++.. ....+. .+ ..+|.||++... +.+||+++-.. .+ |++++.++ ...+++
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~ 159 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTI 159 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT--TEEEEEEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC--CEEEEEecc
Confidence 456778877632 222221 12 248999998652 34799998762 33 56666552 222222
Q ss_pred -eCCCCCccceeeeccCCcEEEEeC-----------------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE
Q psy8875 543 -EEDKTIADGLAVDWIYSHIYWTDA-----------------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM 604 (734)
Q Consensus 543 -~~~~~~p~glAvD~~~~~lY~td~-----------------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L 604 (734)
...+..|..+++|. .+.+|+++. ..++|++.+.. ..+++ ...+..|+||+++|...+|
T Consensus 160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~-~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVV-AEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEE-EEEESSEEEEEECTTSSEE
T ss_pred ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEe-ecCCcccCcceECCCCCEE
Confidence 23577899999995 577887764 23678888763 33333 3678899999999998999
Q ss_pred EEEecCCCceEEEeccCC--Cc--eEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 605 YWSDWGQNAKIERAGMDG--SH--RNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 605 Ywtd~~~~~~I~~~~ldG--~~--~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
|++|.. ..+|++.++++ +. ++++ .....|.||++|..+++||++.
T Consensus 236 Yvadt~-~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 236 YIAELL-AHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEGG-GTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEE
T ss_pred EEEeCC-CCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEe
Confidence 999965 47999998864 32 2222 2346799999995468898864
No 133
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=98.94 E-value=9.5e-13 Score=131.53 Aligned_cols=209 Identities=10% Similarity=0.006 Sum_probs=129.3
Q ss_pred CCcccCCCcccCCCCCccccCCCCCccCCCcccccc------CCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCC
Q psy8875 185 SHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE------AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 258 (734)
Q Consensus 185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~------~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de 258 (734)
..+|.|+.+|.+...+|.|+||.||.+..++.+.++ +.+.+|.+ .++|+ .+
T Consensus 37 ~~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~n-------ggtc~----------------~G 93 (267)
T 4fbr_A 37 DIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQP-------GGVWV----------------LG 93 (267)
T ss_dssp EEECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEE-------EEEEE----------------CC
T ss_pred CCCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccC-------CCeee----------------cc
Confidence 346777778877778999999999999999887776 44445541 22332 12
Q ss_pred CCCC--CCCCCCceecCCC-CeecC--CcccCCCCCCCCCCCCCCCCCCC--------CCCCceecCCCCcccccccccc
Q psy8875 259 KKCH--ETCRSDEFTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQPVK--------CTAGQFTCQNLTACIPDKWVCD 325 (734)
Q Consensus 259 ~~C~--~~C~~~~~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~~~~--------C~~~~~~C~~~~~Ci~~~~~Cd 325 (734)
.+|. .+|.+ .+|.|| +|++. ++.| +|+.|+.+.+|+... |.+ -+|.++++|+. +.+|+
T Consensus 94 ~~c~~~~eC~s--~pC~ngG~C~~~~~sy~C----~C~~Gf~G~~Ce~~~d~C~n~~~c~s--~pC~ngg~c~~-G~~c~ 164 (267)
T 4fbr_A 94 ARDKQNIVAVS--IKSNDGGKTLTGTTTYNG----EGPIGFKSEVTDGDTYSVENQWGGSA--APWHSGGVWVL-GTRGK 164 (267)
T ss_dssp CCSSCCEEEEE--EECSSTTSEEEEEEEETT----SCCEEEEEEECCCCEEEEEEECSSTT--SCCEEEEEEEC-CSSTT
T ss_pred CccccccccCC--CCCCCCCEEecCCccEEe----eCCCCccccCCCCCcccccccCCcCC--ccccCCcceec-ccccc
Confidence 3332 23544 348887 99876 8889 999999999998532 222 25666666664 45566
Q ss_pred CCCCCCCCCCCCCCCCC-CCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccc
Q psy8875 326 GDTVEKDSTCPNATPMN-SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404 (734)
Q Consensus 326 g~~dC~d~~C~~~~~c~-~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~ 404 (734)
...+|.+..|.+..+|. ...+|.| +||.||.+....=+++||..+ ..|...+-
T Consensus 165 ~~i~c~~~~c~ngg~C~dg~~~y~C-------------------------~Cp~Gf~G~~c~~~i~ec~~~-~~c~~~~c 218 (267)
T 4fbr_A 165 QNVINVDAKSNDGGKTLSGTMTYNG-------------------------EGPIGFRGTLTSPDTYTVENQ-WGGSTAPW 218 (267)
T ss_dssp SCEEEEEEECSSTTSEEEEEEEETT-------------------------SCCEEEEEEEEETTEEEEEEE-CSCTTSCC
T ss_pred cccccCCCCCCCCCEeeCCCCCeEE-------------------------eCCCCccccccccccceeccC-CCccCCcc
Confidence 55555555555544442 3344444 666666554211256676543 33444333
Q ss_pred cCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeC
Q psy8875 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKD 461 (734)
Q Consensus 405 ~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~ 461 (734)
...+.+.+.|.+|+.. ..|.- .|.. ..+|++...+|.|.|++||.+.
T Consensus 219 ~~gG~~~~~C~~g~n~----~~c~~--~c~n----gGtC~dg~~sy~CeCp~GF~G~ 265 (267)
T 4fbr_A 219 NPGGFWMIGARNGQNV----VALNV--ASSD----GGKTLAGTMIYNGEGPIGFRAR 265 (267)
T ss_dssp EEEEEEECCCCTTCCE----EEEEE--ECSS----TTSEEEEEEEETTSCCEEEEEE
T ss_pred cCCCeEEEecCCCCcc----ccCCc--CCCC----CCEeeCCCcceeecCCCCcccc
Confidence 3446677888888732 22210 1111 2478888889999999999874
No 134
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=2.6e-07 Score=92.07 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=124.1
Q ss_pred ceeeeeecc----ceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC
Q psy8875 475 ASLLFARKH----DIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI 548 (734)
Q Consensus 475 ~~l~~~~~~----~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~ 548 (734)
..||.+.+. .|+++++.......-+. ......||+++ .++||.+++..+.++++++........+-. .
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~--- 104 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRY-P--- 104 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEEC-S---
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC-C---
Confidence 356666654 69999998766654443 23344677776 799999999999999999875443333322 2
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
+.|.++.+.+++||.+|. .++|.+.+...... +.+-.. .+..++.|. +..|+||...|.. ..|.++++.-.
T Consensus 105 ~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe--~~~G~lyanvw~s-~~I~vIDp~tG 180 (243)
T 3mbr_X 105 GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE--WVNGELLANVWLT-SRIARIDPASG 180 (243)
T ss_dssp SCCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EETTEEEEEETTT-TEEEEECTTTC
T ss_pred CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeE--EeCCEEEEEECCC-CeEEEEECCCC
Confidence 345555566899999995 88999999865433 333221 123444444 4589999998864 69999998544
Q ss_pred ceEEEEE-c------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 624 HRNMVIV-S------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 624 ~~~~lv~-~------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
...-.+. . ...-|||||+|+.+++||+|--.-.+++.+.+..
T Consensus 181 ~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~ 235 (243)
T 3mbr_X 181 KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP 235 (243)
T ss_dssp BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence 4333332 2 1246899999999999999998888999888653
No 135
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.94 E-value=1.6e-07 Score=100.71 Aligned_cols=245 Identities=16% Similarity=0.100 Sum_probs=140.5
Q ss_pred eeeeeccceEEeecC-CCceEEEec--CCcceEEEeeeccCCeEE--EEE------e------CCCcEEEEecCC-CCce
Q psy8875 477 LLFARKHDIRKISLD-HHEMTAIVN--STKSATAIDFVFRTGMIF--WSD------I------SEKKIYKAPIDE-GSER 538 (734)
Q Consensus 477 l~~~~~~~I~~i~l~-~~~~~~l~~--~~~~~~~i~~d~~~~~ly--w~d------~------~~~~I~~~~l~~-g~~~ 538 (734)
|+.++...|..++++ ......+.. ....+..+++++..+.|| .++ . ..+.|....++. |...
T Consensus 54 l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~ 133 (365)
T 1jof_A 54 IYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE 133 (365)
T ss_dssp EEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE
T ss_pred EEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc
Confidence 444444455555553 223322211 112355678887666444 332 1 355566666542 3332
Q ss_pred EEEEe---CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--CCceEE-EEc-C-CCCCceeEEEeCCCCeEEEEecC
Q psy8875 539 TVVIE---EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--GTMRKV-LVR-S-YLDEPRSLALNPIDGWMYWSDWG 610 (734)
Q Consensus 539 ~~~~~---~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~-l~~-~-~l~~P~~iavD~~~g~LYwtd~~ 610 (734)
..+.. .....|.++++++.++.||+++.+.++|.+.+++ |+...+ .+. . ....|++++++|...+||++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 134 KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence 22211 1345789999999888899999888899999986 443221 121 1 25679999999988899998853
Q ss_pred CCceEEEeccC---CCceE--EEEEc---CC---C-------CceeEE-EecCCCeEEEEeCCCC-----eEEEEecC--
Q psy8875 611 QNAKIERAGMD---GSHRN--MVIVS---DI---K-------WPNGLT-LDLVQRRLYWVDAKLN-----EISSCDYN-- 664 (734)
Q Consensus 611 ~~~~I~~~~ld---G~~~~--~lv~~---~l---~-------~P~gla-vD~~~~~LYw~D~~~~-----~I~~~~~d-- 664 (734)
.+.|....++ |.... ..+.. .. . .|.+|+ +++.+++||+++...+ .|..++++
T Consensus 214 -~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 214 -GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp -TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred -CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 3566665554 43221 11211 11 1 588999 9988889999986554 77777764
Q ss_pred CCceEE--EEcCCCCCCCCeEEEE-----ECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCcc
Q psy8875 665 GGNRRL--VLYSPQTLSHPFSIST-----FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN 726 (734)
Q Consensus 665 G~~~~~--i~~~~~~~~~P~gl~v-----~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~ 726 (734)
|.-.++ ++.. ....|.+|++ .+++||+++...+.|..++.... .++.+. .-.++.|..
T Consensus 293 g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~-~l~~~~-~~~~~~p~~ 357 (365)
T 1jof_A 293 GSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE-FLHRVA-RVRIPEPGF 357 (365)
T ss_dssp SCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT-EEEEEE-EEECCSTTE
T ss_pred CCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh-hCceee-EEEcCCCcc
Confidence 332221 1211 1234555555 36899999887776665544333 344433 222455543
No 136
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.94 E-value=4.7e-10 Score=80.11 Aligned_cols=36 Identities=56% Similarity=1.273 Sum_probs=34.3
Q ss_pred CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|...+|+|.+|+||+..|+|||..||.|||||.+
T Consensus 4 ~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~ 39 (45)
T 1d2l_A 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAP 39 (45)
T ss_dssp CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTST
T ss_pred CcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCC
Confidence 478889999999999999999999999999999988
No 137
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.93 E-value=5.6e-10 Score=77.37 Aligned_cols=38 Identities=37% Similarity=1.109 Sum_probs=34.2
Q ss_pred ccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK 131 (734)
Q Consensus 94 C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~ 131 (734)
|++.+|+|.+++++|||..|+|||..||.||+||.+|.
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 66789999974479999999999999999999999984
No 138
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=4.4e-07 Score=91.24 Aligned_cols=188 Identities=15% Similarity=0.098 Sum_probs=129.3
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KV 583 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~ 583 (734)
..||.|+ .+.||.+....++|.++++..|.....++. ......||+++ +++||.+.+..++|.+.+...... ..
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEEC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3788888 689999998888899999987766444443 22233567765 789999999999999999865443 33
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEE-EEc---CCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMV-IVS---DIKWPNGLTLDLVQRRLYWVDAKLNEI 658 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~l-v~~---~l~~P~glavD~~~~~LYw~D~~~~~I 658 (734)
+-.. ..+.||+-| .++||.++ + ..+|...+...... ..+ +.. .+..+|.|.. .+++||.+.+..+.|
T Consensus 132 i~~~--~eGwGLt~D--g~~L~vSd-G-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--~dG~lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYS--GEGWGLCYW--NGKLVRSD-G-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--ANGVIYANIWHSSDV 203 (268)
T ss_dssp EECS--SCCCCEEEE--TTEEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTCSEE
T ss_pred EeCC--CceeEEecC--CCEEEEEC-C-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--eCCEEEEEECCCCeE
Confidence 3322 234566655 68999999 5 57999988765332 222 111 2345677765 488999999999999
Q ss_pred EEEecCCCceEEEEcCC-----------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875 659 SSCDYNGGNRRLVLYSP-----------QTLSHPFSISTF--EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 659 ~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~ 705 (734)
.++|.........+... .....|.|||+. +++||+|.-.=.+++.+.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~ 263 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR 263 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence 99998655544333311 122468999995 689999874445666663
No 139
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=100.57 Aligned_cols=99 Identities=23% Similarity=0.518 Sum_probs=72.2
Q ss_pred ccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCc-cccccccCCCCCcCccc-------cCCCcceeecCC
Q psy8875 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKC-GVDECAKDNGGCLHKCV-------DLPVGYMCECNE 416 (734)
Q Consensus 345 ~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C-~~~eC~~~~~~C~~~C~-------~~~~~~~C~C~~ 416 (734)
+.|.| .|++||.+..|.... .+... ...| ++++|...+..-...|+ +++++|+|.|++
T Consensus 21 g~~~C---~C~~G~~G~~C~~~~-------~~~~~----~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~ 86 (143)
T 4d90_A 21 GSFSC---ECPDGFTDPNCSSVV-------EVASD----EEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPR 86 (143)
T ss_dssp -CCEE---ECCTTCCTTTTCSCC-------CCTTT----TTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCT
T ss_pred CCEEe---ECCCCCCCCCCccCc-------ccccc----ccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcC
Confidence 46788 788898877765432 22111 1123 56778654433345888 778899999999
Q ss_pred CcEecCCCCccc-cccCcCCCCCcc--cceeccCCceEEecCCCeeeCC
Q psy8875 417 GYKLSSNRHTCI-DIDECETPGSCS--QICLNEKGGFKCECVAGYIKDP 462 (734)
Q Consensus 417 G~~l~~~~~~C~-~~~eC~~~~~C~--~~C~n~~g~~~C~C~~gy~~~~ 462 (734)
|| .+..|+ +++||. ..+|. ++|+++.++|+|.|++||.+..
T Consensus 87 G~----~G~~C~~~i~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~G~~ 130 (143)
T 4d90_A 87 GF----NGIHCQHNINECE-VEPCKNGGICTDLVANYSCECPGEFMGRN 130 (143)
T ss_dssp TE----ESTTSCEECCTTT-TCCSCTTCEEEEETTEEEEECCTTCBSTT
T ss_pred CC----cCCCcccCCCcCC-CCCCCCCCEeECCCCCeEeECCCCCccCC
Confidence 99 588997 999997 34564 5899999999999999999864
No 140
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.91 E-value=5.8e-10 Score=76.38 Aligned_cols=35 Identities=54% Similarity=1.264 Sum_probs=19.4
Q ss_pred CCCCceecCCCCeecCCcccCCCCCCCCCCCCCCC
Q psy8875 265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299 (734)
Q Consensus 265 C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C 299 (734)
|.+.+|+|.+|.||+.+|+|||..||.|||||.+|
T Consensus 2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence 44455555555555555555555555555555554
No 141
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.90 E-value=3.8e-10 Score=81.97 Aligned_cols=39 Identities=49% Similarity=1.152 Sum_probs=35.6
Q ss_pred CCCCCCCCceecC-----CCceecCcCccCCCCCCCCCCcccccc
Q psy8875 51 SKPCRNSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 51 ~~~C~~~~~f~C~-----~g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
+..|+ +.+|+|. +++|||..|+|||+.||.|||||.+|.
T Consensus 2 ~~~C~-~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 2 SSRCP-PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCC-CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCC-CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence 34688 8999998 789999999999999999999999885
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.89 E-value=6.3e-07 Score=101.65 Aligned_cols=221 Identities=12% Similarity=0.047 Sum_probs=148.1
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE-EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT-VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~-~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
.+.+|++.+..+.+|++....++|..+++..+.... ..+. ....|.++++++.++.||.+....++|.+.++......
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence 567888888788899888888999999987544322 1223 34579999999988889999988899999998654433
Q ss_pred EEEc-CCCCCc-eeEE-EeCCCCeEEEEecCCCceEEEeccCC-------CceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 583 VLVR-SYLDEP-RSLA-LNPIDGWMYWSDWGQNAKIERAGMDG-------SHRNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 583 ~l~~-~~l~~P-~~ia-vD~~~g~LYwtd~~~~~~I~~~~ldG-------~~~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
..+. ....+| +++. ++|..|.+|.+.......|...+++. ......+...-..+..|++.+.+.+||+..
T Consensus 360 ~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 360 ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred EeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 3332 223344 3554 47777899988753346788887764 122222223334567799987777777654
Q ss_pred CC------CCeEEEEecCCCceE-EEEc-C-----CCCCCCCeEEEE--ECCEEEEEeCC----CCceEEEeccCCCceE
Q psy8875 653 AK------LNEISSCDYNGGNRR-LVLY-S-----PQTLSHPFSIST--FEDWLYWSDWQ----QKAIYKANKFTGDNLT 713 (734)
Q Consensus 653 ~~------~~~I~~~~~dG~~~~-~i~~-~-----~~~~~~P~gl~v--~~~~lywtd~~----~~~v~~~~~~~G~~~~ 713 (734)
.. .+.|..++++...+. .++. . ......+..+++ .+.+||++.|. .+.|..++..+++.++
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 21 458999997744332 3321 0 122345667777 57899999883 5889999999999888
Q ss_pred EEecccccCCCcc
Q psy8875 714 AITGVHQTHEPLN 726 (734)
Q Consensus 714 ~l~~~~~l~~P~~ 726 (734)
+|... .+..|.+
T Consensus 520 ~i~~~-~~~~p~g 531 (543)
T 1nir_A 520 VVKDP-RLITPTG 531 (543)
T ss_dssp EECCT-TCCSEEE
T ss_pred eecCC-CccCCCe
Confidence 88754 3556654
No 143
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=8.8e-07 Score=89.03 Aligned_cols=189 Identities=13% Similarity=0.083 Sum_probs=126.3
Q ss_pred eEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-e
Q psy8875 505 ATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM-R 581 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~-~ 581 (734)
..||.|+ .+.||.+.... ..|.++++..|.....+.-..-....||+++ +++||.+.+..++|.+.++.... .
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 3788888 67999987654 4899999986654333321111123556665 78999999999999999986543 3
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEE----cCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIV----SDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~----~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
..+-.. ..+.||+- ..++||.++ + ..+|+..+..... ...+.. ..+..+|.|.. .+++||...+..+
T Consensus 121 ~ti~~~--~eG~glt~--dg~~L~~Sd-G-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~~G~lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYD--GEGWGLTH--NDQYLIMSD-G-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--VDGEIFANVWQTN 192 (262)
T ss_dssp EEEECS--SCCCCEEE--CSSCEEECC-S-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTSS
T ss_pred EEEECC--CCceEEec--CCCEEEEEC-C-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--ECCEEEEEEccCC
Confidence 344322 24456655 468899999 4 4789998876433 222221 12355666766 4889999999999
Q ss_pred eEEEEecCCCceEEEEcCCC----------CCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875 657 EISSCDYNGGNRRLVLYSPQ----------TLSHPFSISTF--EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~----------~~~~P~gl~v~--~~~lywtd~~~~~v~~~~ 705 (734)
.|.++|.........+.... ....|.|||+. +++||+|.-.=..++.+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~ 253 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEIT 253 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEE
Confidence 99999986655444443211 12367899995 689999974445677663
No 144
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.88 E-value=1.2e-09 Score=77.11 Aligned_cols=39 Identities=54% Similarity=1.211 Sum_probs=35.1
Q ss_pred CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK 131 (734)
Q Consensus 92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~ 131 (734)
..|.+.+|+|.+. |+|||..|+|||..||.|||||.+|.
T Consensus 2 ~~C~~~~F~C~~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp CCSSTTCEECTTT-CCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred CCCCCCceEeCCC-CeEcChhhcCCCCcCCCCCCcccCCC
Confidence 3688899999864 79999999999999999999999984
No 145
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.88 E-value=1.1e-06 Score=87.63 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=125.6
Q ss_pred ceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-
Q psy8875 504 SATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM- 580 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~- 580 (734)
...||.|+ .++||.+.... ..|.++++..|.....+.-.......||+++ +++||.+.+..++|.+.+++...
T Consensus 22 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 22 FTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 45689998 48999987653 5899999986654333321122223455654 79999999999999999986544
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--c---CCCCceeEEEecCCCeEEEEeCCC
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--S---DIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~---~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
...+-.. ..+-||+ +..++||.+| + ..+|...+........-+. . .+..+|.|.. .+++||...+..
T Consensus 98 ~~ti~~~--~~Gwglt--~dg~~L~vSd-g-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~--~~G~lyanvw~s 169 (243)
T 3mbr_X 98 RARFRYP--GEGWALT--SDDSHLYMSD-G-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW--VNGELLANVWLT 169 (243)
T ss_dssp EEEEECS--SCCCEEE--ECSSCEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTT
T ss_pred EEEEeCC--CCceEEe--eCCCEEEEEC-C-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE--eCCEEEEEECCC
Confidence 3333322 2344555 5578999999 5 5789998876533222221 1 2345566664 589999999999
Q ss_pred CeEEEEecCCCceEEEEcCC-----------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875 656 NEISSCDYNGGNRRLVLYSP-----------QTLSHPFSISTF--EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~ 705 (734)
+.|.++|+........+... .....|.|||+. +++||+|.-.=..++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 99999998655544433311 122467899995 689999875445677664
No 146
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=98.87 E-value=1.9e-10 Score=108.66 Aligned_cols=43 Identities=30% Similarity=0.716 Sum_probs=37.7
Q ss_pred Cc-cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccc
Q psy8875 386 KC-GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 386 ~C-~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.| +||||...+..|.+ .|+|++++|+|.|++||.+..++++|+
T Consensus 118 ~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~ 162 (162)
T 1uzk_A 118 ILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 162 (162)
T ss_dssp CEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred ccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence 45 89999876677874 899999999999999999999999884
No 147
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=98.87 E-value=1.6e-09 Score=95.67 Aligned_cols=80 Identities=28% Similarity=0.650 Sum_probs=60.7
Q ss_pred cccccccCC------CCC--cCccccCCCcceeecCCCcEecCCCCccccc---cCcCC-CCCcccceeccCCceEEecC
Q psy8875 388 GVDECAKDN------GGC--LHKCVDLPVGYMCECNEGYKLSSNRHTCIDI---DECET-PGSCSQICLNEKGGFKCECV 455 (734)
Q Consensus 388 ~~~eC~~~~------~~C--~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~---~eC~~-~~~C~~~C~n~~g~~~C~C~ 455 (734)
|++||+.++ ..| ...|++++++|+|.|++||. +..|+++ +||.. ++.|+++|+|+.++|+|.|+
T Consensus 5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~----G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~ 80 (114)
T 1aut_L 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWE----GRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA 80 (114)
T ss_dssp ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEE----STTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECC
T ss_pred ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCc----CCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECC
Confidence 455666554 123 24799999999999999994 5668875 46874 57899999999999999999
Q ss_pred CCeeeCCCCCccccccc
Q psy8875 456 AGYIKDPHHPTQCKAAE 472 (734)
Q Consensus 456 ~gy~~~~~~~t~C~~~~ 472 (734)
+||.+..++++ |.+..
T Consensus 81 ~G~~~~~~g~~-C~~~~ 96 (114)
T 1aut_L 81 PGYKLGDDLLQ-CHPAV 96 (114)
T ss_dssp TTEEECTTSSC-EEECS
T ss_pred CCeeECCCCCc-cCcCc
Confidence 99999887665 77643
No 148
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.86 E-value=9.8e-07 Score=96.19 Aligned_cols=216 Identities=13% Similarity=0.091 Sum_probs=151.6
Q ss_pred ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
...|+..++....... +......+.+++|++..+.||++....+.|+..++..+... ..+. ....|.++++++.++.
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-RKTD-KIGLPRGLLLSKDGKE 267 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EECC-CCSEEEEEEECTTSSE
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-EEec-CCCCceEEEEcCCCCE
Confidence 3567777776654433 33345678999999988899999888889999998754322 2222 3456889999988888
Q ss_pred EEEEeC-------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875 561 IYWTDA-------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633 (734)
Q Consensus 561 lY~td~-------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l 633 (734)
||.+.. ..+.|.+.++........+ .....|.+++++|...+||++... .+.|...+++.......+. ..
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-~~~v~v~d~~~~~~~~~~~-~~ 344 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC-CSKIEVYDLKEKKVQKSIP-VF 344 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT-TTEEEEEETTTTEEEEEEE-CS
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC-CCEEEEEECCCCcEEEEec-CC
Confidence 888875 3468889998755433333 122378999999988899999754 4788888887544433333 44
Q ss_pred CCceeEEEecCCCeEEEEeCCC--------------CeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKL--------------NEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQ 697 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~--------------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~ 697 (734)
..|.+|++++.+.+||.+.... +.|+.+++........+.. ...|.+|++ .+.+||.+...
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSCEEEEEETT
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCCCCEEEEEECC
Confidence 6689999998888999998654 4899999865554444432 346788888 45678888776
Q ss_pred CCceEEEe
Q psy8875 698 QKAIYKAN 705 (734)
Q Consensus 698 ~~~v~~~~ 705 (734)
.+.|...+
T Consensus 422 d~~i~v~~ 429 (433)
T 3bws_A 422 DHQIRVYR 429 (433)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 66666554
No 149
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=98.85 E-value=6.4e-08 Score=106.96 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=112.4
Q ss_pred CCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEE-cCC------CCCceeEEEeCC---CCe
Q psy8875 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLV-RSY------LDEPRSLALNPI---DGW 603 (734)
Q Consensus 535 g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~-~~~------l~~P~~iavD~~---~g~ 603 (734)
+...+++. .++..|.+||+++. ++||+++...++|.+++.+ |....++. ... ...+.|||++|. +++
T Consensus 16 gf~~~~~a-~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 16 NFDKKVIL-SNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp TSCEEEEE-CCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CeEEEEEE-CCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 33344444 57999999999964 6899999877789999874 54433322 222 234569999987 899
Q ss_pred EEEEecC-------C----CceEEEeccCCC-----ceEEEEE----cCCCCceeEEEecCCCeEEEEeCC---------
Q psy8875 604 MYWSDWG-------Q----NAKIERAGMDGS-----HRNMVIV----SDIKWPNGLTLDLVQRRLYWVDAK--------- 654 (734)
Q Consensus 604 LYwtd~~-------~----~~~I~~~~ldG~-----~~~~lv~----~~l~~P~glavD~~~~~LYw~D~~--------- 654 (734)
||++... . ..+|.|..+++. ..++|+. ...+.+.+|++++ .++||++...
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~ 172 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYL 172 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGT
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccc
Confidence 9999852 0 258999887642 2344443 2357799999995 6689999431
Q ss_pred -----------------------CCeEEEEecCCC-----------ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCC
Q psy8875 655 -----------------------LNEISSCDYNGG-----------NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQK 699 (734)
Q Consensus 655 -----------------------~~~I~~~~~dG~-----------~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~ 699 (734)
.++|.|++.+|+ ..+++.. .+.+|.+|++. .+.||+++.+..
T Consensus 173 ~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~---G~RNp~gla~dp~G~L~~~d~g~~ 249 (454)
T 1cru_A 173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL---GHRNPQGLAFTPNGKLLQSEQGPN 249 (454)
T ss_dssp TSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB---CCSEEEEEEECTTSCEEEEEECSS
T ss_pred ccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE---CCCCcceEEECCCCCEEEEecCCC
Confidence 468999999998 3344433 36789999996 589999997654
No 150
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.84 E-value=4.6e-07 Score=91.06 Aligned_cols=179 Identities=11% Similarity=0.095 Sum_probs=120.9
Q ss_pred ceeeeeecc--ceEEeecCCCceE-EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875 475 ASLLFARKH--DIRKISLDHHEMT-AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551 (734)
Q Consensus 475 ~~l~~~~~~--~I~~i~l~~~~~~-~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g 551 (734)
..||++... .|+++++...... .+++......||+++ .++||.+++..+.++++++........+ .. .+.|
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti-~~---~~eG 138 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT-RY---SGEG 138 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE-EC---SSCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE-eC---CCce
Confidence 356666654 4888888765543 333333344667776 7899999999999999998754433333 21 2344
Q ss_pred eeeeccCCcEEEEeCCCCeEEEEeCCCCc-eEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 552 LAVDWIYSHIYWTDAHKNTIELANFEGTM-RKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
.++.+.+++||.++ +.++|.+.+..... ...+... .+..++.|.. ..|+||...|.. ..|.+++..-....
T Consensus 139 wGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--~dG~lyanvw~s-~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 139 WGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--ANGVIYANIWHS-SDVLEIDPATGTVV 214 (268)
T ss_dssp CCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTC-SEEEEECTTTCBEE
T ss_pred eEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--eCCEEEEEECCC-CeEEEEeCCCCcEE
Confidence 44445588999999 58999999986543 3333221 1334455554 488999999864 79999998544433
Q ss_pred EEEE-c------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875 627 MVIV-S------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 627 ~lv~-~------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~ 663 (734)
-.+. . ...-|||||+|+.+++||+|--.-.+++.+.+
T Consensus 215 ~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 215 GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 3332 2 12468999999999999999987788988876
No 151
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=4.6e-10 Score=82.08 Aligned_cols=37 Identities=38% Similarity=1.003 Sum_probs=34.7
Q ss_pred CCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 132 ~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..+|...+|+|.+|+||+..|+|||..||.|||||.+
T Consensus 4 p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~ 40 (52)
T 2m0p_A 4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKN 40 (52)
T ss_dssp CCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHS
T ss_pred CCCCCCCceECCCCCEEecCccCCCCCCCCCCCcccc
Confidence 3578999999999999999999999999999999987
No 152
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=98.83 E-value=1.1e-09 Score=86.45 Aligned_cols=47 Identities=32% Similarity=0.662 Sum_probs=44.3
Q ss_pred cccccccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccCcC
Q psy8875 388 GVDECAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
|+|||...+++|+|.|+|+++ +|+|.|++||.|..|+++|.+++||.
T Consensus 4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~ 51 (69)
T 1kli_L 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 51 (69)
T ss_dssp CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccccc
Confidence 688999888999999999999 89999999999999999999999985
No 153
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.82 E-value=2.3e-06 Score=97.14 Aligned_cols=229 Identities=10% Similarity=-0.009 Sum_probs=153.7
Q ss_pred eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecC--CCCceEEEEeCCCCCccc
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIEEDKTIADG 551 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~--~g~~~~~~~~~~~~~p~g 551 (734)
.+++++ .+.|..+++........+.....|.++++++..++||+++ ..+.|..+++. .+.... .+.. ...|++
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~v~-~i~~-G~~P~~ 244 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVA-EIKI-GSEARS 244 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEE-EEEC-CSEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCCcEeE-EEec-CCCCce
Confidence 445544 4678888888766655555556788999999889999886 46789999984 332222 2332 346999
Q ss_pred eeee----ccCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CC----------CCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875 552 LAVD----WIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SY----------LDEPRSLALNPIDGWMYWSDWGQNAKIE 616 (734)
Q Consensus 552 lAvD----~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~----------l~~P~~iavD~~~g~LYwtd~~~~~~I~ 616 (734)
|+++ +.++.||+++...+.|.+++.........+. .. ...+.+|++.+.+..++++. ...++|+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v~ 323 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKIL 323 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeEE
Confidence 9999 5888999999999999999865543332222 11 11445777766555555554 4568899
Q ss_pred EeccCCCceEEE-EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE-E--CCEE
Q psy8875 617 RAGMDGSHRNMV-IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST-F--EDWL 691 (734)
Q Consensus 617 ~~~ldG~~~~~l-v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v-~--~~~l 691 (734)
.++........+ ....-.+|+++.+|+.+.+||++....++|..+++........+......+|| .|+.+ . .+.+
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v 403 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 403 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcE
Confidence 888755432211 11234578899999999999999988999999998765544444321245666 46655 3 3667
Q ss_pred EEEe-CCCCceEEEeccC
Q psy8875 692 YWSD-WQQKAIYKANKFT 708 (734)
Q Consensus 692 ywtd-~~~~~v~~~~~~~ 708 (734)
|++. .+.+.|..++..+
T Consensus 404 ~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEBSSSSEEEEEECCT
T ss_pred EEeCCCCCCeEEEecCCC
Confidence 7664 4567888887666
No 154
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=98.82 E-value=2e-09 Score=99.89 Aligned_cols=57 Identities=40% Similarity=0.937 Sum_probs=47.7
Q ss_pred ceeecCCCcEecCCCCccccccCcCC-CCCccc-ceeccCCceEEecCCCeeeCCCCCccc
Q psy8875 410 YMCECNEGYKLSSNRHTCIDIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC 468 (734)
Q Consensus 410 ~~C~C~~G~~l~~~~~~C~~~~eC~~-~~~C~~-~C~n~~g~~~C~C~~gy~~~~~~~t~C 468 (734)
|.|.|++||.+. +++.|++||||+. ++.|.+ +|+|+.++|+|.|++||.++.++++ |
T Consensus 88 ~~C~C~~Gy~~~-~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~-C 146 (147)
T 2w86_A 88 VDPICGKGYSRI-KGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRI-C 146 (147)
T ss_dssp CCTTTCTTEEEE-ETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSC-B
T ss_pred CcccCCCccccC-CCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCe-e
Confidence 677788888763 6889999999974 567875 8999999999999999999887665 5
No 155
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=77.11 Aligned_cols=36 Identities=50% Similarity=1.213 Sum_probs=32.9
Q ss_pred CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|...+|+|.+|+||+..|+|||..||.|||||.+
T Consensus 6 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~ 41 (44)
T 3a7q_B 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD 41 (44)
T ss_dssp --CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSC
T ss_pred CCCCCCceEcCCCCEeChhhccCCCCCCCCCccccC
Confidence 468889999999999999999999999999999987
No 156
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.81 E-value=3.4e-07 Score=94.29 Aligned_cols=194 Identities=12% Similarity=-0.020 Sum_probs=131.8
Q ss_pred CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCcee
Q psy8875 515 GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594 (734)
Q Consensus 515 ~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~ 594 (734)
+.+++++...+.|+.++...|.....+-......+..+++.+ .++||++. .+.|...+.+|+....+-......+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs~--~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFSY--SKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEEC--BSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEeC--CCCEEEECCCCCEEEEEcCCCCccccc
Confidence 455556556666666665434332222111113578888885 56677743 578999999887665554322234556
Q ss_pred EEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-C----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-D----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669 (734)
Q Consensus 595 iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 669 (734)
+++.+ .|.+++++.+...+|+..+.+|+....+... . ...|.+++++ .++.+++++...++|..++.+|+...
T Consensus 82 ~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 82 ARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp EEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred cEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC-CCCCEEEEecCCCEEEEECCCCCEEE
Confidence 67765 6778888765357888888898865544321 1 2357788887 46677889998999999999977666
Q ss_pred EEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 670 LVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 670 ~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
.+-. ...|+++.+ .++.+++++...++|+.+++.+|+.+..+..
T Consensus 160 ~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 160 SVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred EEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 5543 246888777 4688999999888999999999999888864
No 157
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.81 E-value=2.2e-09 Score=76.10 Aligned_cols=36 Identities=39% Similarity=0.982 Sum_probs=33.9
Q ss_pred CCcccccCcCCC-CceEeCccccCCCCCCCCCCCCCC
Q psy8875 133 RTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 133 ~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|...+|+|.+ |+||+..|+|||..||.|||||.+
T Consensus 5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~ 41 (43)
T 2jm4_A 5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN 41 (43)
T ss_dssp CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence 468889999999 999999999999999999999987
No 158
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=98.81 E-value=1.4e-09 Score=98.91 Aligned_cols=80 Identities=28% Similarity=0.620 Sum_probs=34.6
Q ss_pred cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccc-c-cCcCC-CCCcccceeccCCceEEecCCCeeeCCCC
Q psy8875 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID-I-DECET-PGSCSQICLNEKGGFKCECVAGYIKDPHH 464 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~-~-~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~ 464 (734)
++|+|..++..-...|++++++|+|.|++|| .++.|.+ + ++|.. ++.|.++|+++.++|.|.|++||.+..++
T Consensus 41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~----~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g 116 (134)
T 2vh0_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG 116 (134)
T ss_dssp --------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTS
T ss_pred CcCcCCCCCCCCcCCcccCCCCEEeeCCCCc----cCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCC
Confidence 7888986542223489999999999999999 4788987 6 89975 46799999999999999999999988776
Q ss_pred Cccccccc
Q psy8875 465 PTQCKAAE 472 (734)
Q Consensus 465 ~t~C~~~~ 472 (734)
++ |..+.
T Consensus 117 ~~-C~~~~ 123 (134)
T 2vh0_B 117 KA-CIPTG 123 (134)
T ss_dssp SC-EEESS
T ss_pred Cc-cCcCC
Confidence 55 87643
No 159
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=98.80 E-value=1.5e-09 Score=104.51 Aligned_cols=80 Identities=29% Similarity=0.686 Sum_probs=35.5
Q ss_pred c-cccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCcccc-c-cCcCC-CCCcccceeccCCceEEecCCCeee
Q psy8875 387 C-GVDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCID-I-DECET-PGSCSQICLNEKGGFKCECVAGYIK 460 (734)
Q Consensus 387 C-~~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~~-~-~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~ 460 (734)
| ++++|..+ .|.+ .|++++++|+|.|++|| .|+.|.+ + ++|.. ++.|.+.|+|+.|+|.|.|++||.+
T Consensus 39 c~dideC~~~--pC~ngg~C~n~~g~y~C~C~~Gf----~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l 112 (195)
T 1nfu_B 39 YKDGDQCETS--PCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL 112 (195)
T ss_dssp ------------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred CCCCcccCCC--CCCCCCEeECCCCCeeEeCCCCc----eeccccccccccccCCCCCCCCEeECCCCCeEEECCCCcee
Confidence 5 78999865 4544 89999999999999999 4788987 6 89975 4789999999999999999999998
Q ss_pred CCCCCcccccccc
Q psy8875 461 DPHHPTQCKAAEG 473 (734)
Q Consensus 461 ~~~~~t~C~~~~~ 473 (734)
..++++ |..+..
T Consensus 113 ~~dG~~-C~~~~~ 124 (195)
T 1nfu_B 113 ADNGKA-CIPTGP 124 (195)
T ss_dssp CTTSSC-EEESSS
T ss_pred CCCCCc-cccCCC
Confidence 877665 876543
No 160
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=98.79 E-value=1.6e-09 Score=81.74 Aligned_cols=45 Identities=31% Similarity=0.718 Sum_probs=41.9
Q ss_pred cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 390 ~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
|||...++.|+|.|+|++++|+|.|++||.|..|+++|.+++||.
T Consensus 2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~ 46 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46 (55)
T ss_dssp CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence 678777788999999999999999999999999999999999985
No 161
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.78 E-value=1.8e-06 Score=88.80 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=148.2
Q ss_pred ccceEEeec-CCCceEEEecCC-cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 482 KHDIRKISL-DHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 482 ~~~I~~i~l-~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
...|+.++. +|...-.+.... ..+..+++.+ .+.||++ ..+.|+.++++ |.....+.......+.++++. ..+
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~~-G~~~W~~~~~~~~~~~~~~~~-~dG 88 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITRD-GRELWNIAAPAGCEMQTARIL-PDG 88 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECTT-SCEEEEEECCTTCEEEEEEEC-TTS
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECCC-CCEEEEEcCCCCccccccEEC-CCC
Confidence 455666666 443333332221 3567777776 4556663 46678888884 543222221111234455665 467
Q ss_pred cEEEEeCC-CCeEEEEeCCCCceEEEEc-C----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875 560 HIYWTDAH-KNTIELANFEGTMRKVLVR-S----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633 (734)
Q Consensus 560 ~lY~td~~-~~~I~~~~ldG~~~~~l~~-~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l 633 (734)
++++++.. .++|..++.+|+....+.. . ....|+++++++ .|.+++++.. .++|...+.+|.....+-. -
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~-~~~v~~~d~~G~~~w~~~~--~ 164 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFA-TSEVREIAPNGQLLNSVKL--S 164 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEEC--S
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecC-CCEEEEECCCCCEEEEEEC--C
Confidence 88888877 7899999999987655432 1 123677888887 5667777754 5799999999765544432 2
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCC---CCCCCCeEEEE-ECCEEEEEeCC----------C
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSP---QTLSHPFSIST-FEDWLYWSDWQ----------Q 698 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~---~~~~~P~gl~v-~~~~lywtd~~----------~ 698 (734)
..|.++++. .++.+++++...++|..++.+ |+..-.+.... ..+..|.++++ .++.||++++. .
T Consensus 165 ~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~ 243 (276)
T 3no2_A 165 GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH 243 (276)
T ss_dssp SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC
T ss_pred CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC
Confidence 568888886 577888998888899999998 77776665321 23566888888 68999999963 3
Q ss_pred CceEEEeccCCCceEEEecc
Q psy8875 699 KAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 699 ~~v~~~~~~~G~~~~~l~~~ 718 (734)
.+++.+++ +|+.+..+...
T Consensus 244 ~~~~~~~~-~g~~~W~~~~~ 262 (276)
T 3no2_A 244 PQLVEIDS-EGKVVWQLNDK 262 (276)
T ss_dssp CSEEEECT-TSBEEEEECCT
T ss_pred ceEEEECC-CCCEEEEecCc
Confidence 46888876 77776666544
No 162
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.77 E-value=1.6e-09 Score=78.79 Aligned_cols=40 Identities=45% Similarity=0.989 Sum_probs=27.4
Q ss_pred CCCCCCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875 261 CHETCRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ 300 (734)
Q Consensus 261 C~~~C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~ 300 (734)
|...|.+.+|+|.+| +||+..|+|||..||.|||||.+|.
T Consensus 3 C~~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp SCCCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCCCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 334566667777777 6777777777777777777777665
No 163
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.76 E-value=2.9e-06 Score=96.40 Aligned_cols=251 Identities=9% Similarity=0.027 Sum_probs=155.8
Q ss_pred eeeeeec-cceEEeecC--CCceEEEecCCcceEEEeee----ccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----
Q psy8875 476 SLLFARK-HDIRKISLD--HHEMTAIVNSTKSATAIDFV----FRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE---- 544 (734)
Q Consensus 476 ~l~~~~~-~~I~~i~l~--~~~~~~l~~~~~~~~~i~~d----~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~---- 544 (734)
++|+++. ..|..+++. ......-+.....|.+|+++ +..++||+++...+.|..++.........+...
T Consensus 210 ~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 210 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred EEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 4455443 468888884 33333333445678999999 578899999887777666554322111111000
Q ss_pred --------------------------------------------------CCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 545 --------------------------------------------------DKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 545 --------------------------------------------------~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
....|.++++++.++.+|+++...++|.++
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 012345678888888899999888999999
Q ss_pred eCCCCceEEEE-c-CCCCCc-eeEE-EeCCCCeEEEEecCCCceEEEeccCCCc-----eEEE--EEcCCCCceeEEEec
Q psy8875 575 NFEGTMRKVLV-R-SYLDEP-RSLA-LNPIDGWMYWSDWGQNAKIERAGMDGSH-----RNMV--IVSDIKWPNGLTLDL 643 (734)
Q Consensus 575 ~ldG~~~~~l~-~-~~l~~P-~~ia-vD~~~g~LYwtd~~~~~~I~~~~ldG~~-----~~~l--v~~~l~~P~glavD~ 643 (734)
++........+ . ....+| +|+. ++|..+.+|.+.......|..++.+... .+++ +...-..+..|.+.+
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p 449 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP 449 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred ECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC
Confidence 98755443333 2 233455 5665 5887788887764334689888887521 1222 222223345577777
Q ss_pred CCCeEEEEeCC------CCeEEEEecCCC-----ce--EEEEc-----CCCCCCCCeEEEE--ECCEEEEEeCC----CC
Q psy8875 644 VQRRLYWVDAK------LNEISSCDYNGG-----NR--RLVLY-----SPQTLSHPFSIST--FEDWLYWSDWQ----QK 699 (734)
Q Consensus 644 ~~~~LYw~D~~------~~~I~~~~~dG~-----~~--~~i~~-----~~~~~~~P~gl~v--~~~~lywtd~~----~~ 699 (734)
.+.+||+.... .+.|..++++.. .. +++.. -+....+|..+.+ .+.+||++.|. .+
T Consensus 450 ~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~ 529 (567)
T 1qks_A 450 NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES 529 (567)
T ss_dssp TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCC
Confidence 77788776542 348999886533 32 33311 0112346777777 57899999983 68
Q ss_pred ceEEEeccCCCceEEEecccccCCCccC
Q psy8875 700 AIYKANKFTGDNLTAITGVHQTHEPLNS 727 (734)
Q Consensus 700 ~v~~~~~~~G~~~~~l~~~~~l~~P~~i 727 (734)
.|..++..+++..++|... .+..|.++
T Consensus 530 ~i~v~D~~t~~~~~~i~~~-~~~~P~g~ 556 (567)
T 1qks_A 530 ALVVVDDKTLELKHVIKDE-RLVTPTGK 556 (567)
T ss_dssp EEEEEETTTTEEEEEECCT-TCCSEEEE
T ss_pred cEEEEECCCceEEEEeCCC-cccCCCee
Confidence 8999999999888888754 35566543
No 164
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.75 E-value=3.2e-09 Score=77.02 Aligned_cols=36 Identities=42% Similarity=1.044 Sum_probs=33.1
Q ss_pred CCcccccCcCC-----CCceEeCccccCCCCCCCCCCCCCC
Q psy8875 133 RTCQASEFRCG-----NNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 133 ~~C~~~~f~C~-----~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|.+.+|+|. +|+|||.+|+|||..||.|||||.+
T Consensus 5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~ 45 (47)
T 1k7b_A 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 45 (47)
T ss_dssp -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence 46888999998 7999999999999999999999987
No 165
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=98.73 E-value=4.5e-09 Score=80.26 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=46.0
Q ss_pred cccCCCCCcCccccCC-CcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCC
Q psy8875 392 CAKDNGGCLHKCVDLP-VGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448 (734)
Q Consensus 392 C~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g 448 (734)
|...+++|+|.|+|++ ++|+|.|++||.|..|+++|.++++ .+|.++|+|...
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~----~pC~~~c~n~~~ 55 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP----FPCGRVSVSQTS 55 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS----SCTTCCCSCCCS
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC----CCCCCccccccc
Confidence 5556789999999999 6999999999999999999999764 579999998653
No 166
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=98.73 E-value=2.9e-06 Score=90.27 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=136.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCC---------------CcEEEEecCCC--Cc-eEEEEeCCC----CCccceeeecc-
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISE---------------KKIYKAPIDEG--SE-RTVVIEEDK----TIADGLAVDWI- 557 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~---------------~~I~~~~l~~g--~~-~~~~~~~~~----~~p~glAvD~~- 557 (734)
.+.++.++.+|. .++||+.|.+. .+|..++|..+ .. +++.+...+ .....|+||..
T Consensus 85 ~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 85 ELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp SSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred ceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence 466788898885 78899998652 25788888855 33 222332222 23457999932
Q ss_pred ------CCcEEEEeCCCCeEEEEeCC-CCceEEEEc---CC--------------CCCceeEEEeCC----CCeEEEEec
Q psy8875 558 ------YSHIYWTDAHKNTIELANFE-GTMRKVLVR---SY--------------LDEPRSLALNPI----DGWMYWSDW 609 (734)
Q Consensus 558 ------~~~lY~td~~~~~I~~~~ld-G~~~~~l~~---~~--------------l~~P~~iavD~~----~g~LYwtd~ 609 (734)
.+.+|+||.....|.|+++. |+..+++-. .. .....||||.|. .+.|||.-.
T Consensus 164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence 57899999999999999985 455554411 00 136679999998 789999986
Q ss_pred CCCceEEEecc----CCC---ceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCC-----CceEEEEcCCC
Q psy8875 610 GQNAKIERAGM----DGS---HRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG-----GNRRLVLYSPQ 676 (734)
Q Consensus 610 ~~~~~I~~~~l----dG~---~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG-----~~~~~i~~~~~ 676 (734)
. ..+++++.. +.+ ..+.+.... .....++++|..++.||+++...+.|.+.+.++ .+..+|+..+
T Consensus 244 s-s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~- 321 (381)
T 3q6k_A 244 S-AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS- 321 (381)
T ss_dssp S-CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-
T ss_pred C-CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-
Confidence 4 357777752 222 223333332 234457888878999999999999999999887 4667788776
Q ss_pred CCCCCeEEEE-ECCEEEEEeCCC
Q psy8875 677 TLSHPFSIST-FEDWLYWSDWQQ 698 (734)
Q Consensus 677 ~~~~P~gl~v-~~~~lywtd~~~ 698 (734)
.+.+|.+|++ .+++||++..+-
T Consensus 322 ~l~~pd~~~i~~~g~Lwv~sn~l 344 (381)
T 3q6k_A 322 RFVFGTDISVDSKGGLWFMSNGF 344 (381)
T ss_dssp TCCSEEEEEECTTSCEEEEECSC
T ss_pred CccccCeEEECCCCeEEEEECcc
Confidence 8999999999 578999987553
No 167
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.73 E-value=1.7e-09 Score=77.08 Aligned_cols=36 Identities=50% Similarity=1.303 Sum_probs=33.9
Q ss_pred CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|...+|+|.+|+|||..|+|||..||.|||||..
T Consensus 3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence 468889999999999999999999999999999986
No 168
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.72 E-value=4.9e-09 Score=76.66 Aligned_cols=38 Identities=42% Similarity=1.133 Sum_probs=34.0
Q ss_pred CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCC
Q psy8875 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130 (734)
Q Consensus 92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C 130 (734)
..|.+.+|+|.+. ++|||..|+|||..||.||+||.+|
T Consensus 5 ~~C~~~~F~C~~~-g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 5 KTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp CTTCTTEEEETTT-TEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CCCCCCcEEcCCC-CeEcChhhcCCCCCCCCCCCccccc
Confidence 4688899999633 7999999999999999999999987
No 169
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.72 E-value=2.6e-06 Score=92.08 Aligned_cols=230 Identities=13% Similarity=0.023 Sum_probs=141.8
Q ss_pred eeeeee--ccceEEeecCCC----ceEEEec--------CCcceEEEeeeccCCeEEEEEeCC------CcEEEEecCCC
Q psy8875 476 SLLFAR--KHDIRKISLDHH----EMTAIVN--------STKSATAIDFVFRTGMIFWSDISE------KKIYKAPIDEG 535 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~----~~~~l~~--------~~~~~~~i~~d~~~~~lyw~d~~~------~~I~~~~l~~g 535 (734)
+|+++. +..|+.+++... .+..++. +...|..+...+. + ||++...+ +.|..++..+.
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 444443 456888877532 2333331 3457888877764 4 99987665 67888887643
Q ss_pred CceEEEEeCCCCCcccee----eeccCCcEEEEeCC------------------CCeEEEEeCCCCce-EEEEcC-CCCC
Q psy8875 536 SERTVVIEEDKTIADGLA----VDWIYSHIYWTDAH------------------KNTIELANFEGTMR-KVLVRS-YLDE 591 (734)
Q Consensus 536 ~~~~~~~~~~~~~p~glA----vD~~~~~lY~td~~------------------~~~I~~~~ldG~~~-~~l~~~-~l~~ 591 (734)
.....+ . .-..|.+++ +.+..+.||.++++ .++|.+.+++.... .+|-.+ ....
T Consensus 175 ~v~~~~-~-~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 175 EPLGKW-E-IDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp CEEEEC-C-SBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred eEEEEE-c-cCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 322222 1 112344444 45567778888753 68999999976432 223222 2246
Q ss_pred ceeEEE--eCCCCeEEEEec----CCCceEEEeccCCCceE--EEE--Ec-----C-----------CCCceeEEEecCC
Q psy8875 592 PRSLAL--NPIDGWMYWSDW----GQNAKIERAGMDGSHRN--MVI--VS-----D-----------IKWPNGLTLDLVQ 645 (734)
Q Consensus 592 P~~iav--D~~~g~LYwtd~----~~~~~I~~~~ldG~~~~--~lv--~~-----~-----------l~~P~glavD~~~ 645 (734)
|+.|++ +|...++|++.. ...+.|++...++...+ .++ .. . -..|.+|.|++.+
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 888877 999999999874 02367776655542211 111 11 1 1458999999999
Q ss_pred CeEEEEeCCCCeEEEEecC-CCceEEEEcC--C------------CCCCCCeEEEE--ECCEEEEEeC------------
Q psy8875 646 RRLYWVDAKLNEISSCDYN-GGNRRLVLYS--P------------QTLSHPFSIST--FEDWLYWSDW------------ 696 (734)
Q Consensus 646 ~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~--~------------~~~~~P~gl~v--~~~~lywtd~------------ 696 (734)
++||++.+..+.|..++++ ....+.+... . .....|.+|++ ++.+||+|+.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~ 412 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE 412 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTT
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCC
Confidence 9999999999999999974 3333333221 1 01125888888 5889999992
Q ss_pred -CCCceEEE--eccCC
Q psy8875 697 -QQKAIYKA--NKFTG 709 (734)
Q Consensus 697 -~~~~v~~~--~~~~G 709 (734)
.+..|+++ +..+|
T Consensus 413 ~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 413 GLKGWMVKLNANPSGG 428 (462)
T ss_dssp CCCCEEEEEEECTTSC
T ss_pred CCceEEEEEEecCCCC
Confidence 34566645 66666
No 170
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=98.70 E-value=1.2e-08 Score=93.91 Aligned_cols=78 Identities=27% Similarity=0.645 Sum_probs=63.6
Q ss_pred cccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCcccc-ccCc---C-CCCCcccceeccCC-ceEEecCCCee
Q psy8875 388 GVDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCID-IDEC---E-TPGSCSQICLNEKG-GFKCECVAGYI 459 (734)
Q Consensus 388 ~~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~~-~~eC---~-~~~~C~~~C~n~~g-~~~C~C~~gy~ 459 (734)
++++|..+ .|.+ .|++++++|+|.|++|| .++.|.+ +++| . .++.|+++|+++.+ +|.|.|++||.
T Consensus 46 did~C~~~--pC~n~g~C~~~~g~y~C~C~~G~----~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~ 119 (142)
T 2c4f_L 46 DGDQCASS--PCQNGGSCKDQLQSYICFCLPAF----EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119 (142)
T ss_dssp TCCGGGGC--CCCTTCEEEEETTEEEEECCTTE----ESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEE
T ss_pred ccCcCcCC--CcCCCCEEeCCCCCEEeeCCCCc----cCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCce
Confidence 67888864 4554 89999999999999999 4788986 6775 2 24678899999999 99999999999
Q ss_pred eCCCCCccccccc
Q psy8875 460 KDPHHPTQCKAAE 472 (734)
Q Consensus 460 ~~~~~~t~C~~~~ 472 (734)
+..++++ |..+.
T Consensus 120 l~~dG~~-C~~~~ 131 (142)
T 2c4f_L 120 LLADGVS-CTPTV 131 (142)
T ss_dssp ECTTSSC-EEESS
T ss_pred ECCCCCC-CCCCC
Confidence 9877665 87643
No 171
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=98.69 E-value=6.9e-09 Score=76.80 Aligned_cols=43 Identities=30% Similarity=0.797 Sum_probs=39.0
Q ss_pred cccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
|..++++|+|.|+|++++|+|.|++||+|..|+++|.+++||.
T Consensus 1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~p 43 (51)
T 1kig_L 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP 43 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCccc
Confidence 4456788999999999999999999999999999999999973
No 172
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=98.69 E-value=3.6e-09 Score=97.64 Aligned_cols=49 Identities=29% Similarity=0.628 Sum_probs=42.6
Q ss_pred Cc-cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 386 KC-GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 386 ~C-~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
.| +++||...+..|. +.|++++++|+|.|++||.+..+++.|..+++|+
T Consensus 92 ~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C~ 143 (143)
T 2bou_A 92 TCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143 (143)
T ss_dssp CEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCBC
T ss_pred CcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCccC
Confidence 57 7999987556776 6899999999999999999999999999888774
No 173
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.69 E-value=1e-08 Score=97.42 Aligned_cols=57 Identities=30% Similarity=0.701 Sum_probs=47.5
Q ss_pred CCCCCCCCceecC--CCceecCcCccCCCCCCCCCCccc--ccccC-cccCCce--eccCCCCeeeC
Q psy8875 51 SKPCRNSTMFRCT--GGMCIPSTWVCDGQNDCPDGVDEK--KCQKR-ICGQEEF--TCRSSPGECVP 110 (734)
Q Consensus 51 ~~~C~~~~~f~C~--~g~Ci~~~~~cdg~~dC~dg~de~--~C~~~-~C~~~~~--~C~~~~~~Ci~ 110 (734)
..+|+ +.+|+|. +|.|||..|+|||..||+|||||. +|... +|.+.+| +|.+ +.|+.
T Consensus 50 ~~~C~-~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~--d~C~k 113 (220)
T 2gtl_N 50 GTHCE-KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTW--HGCLA 113 (220)
T ss_dssp CCSSC-TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEE--CSSCC
T ss_pred CCCCC-CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecC--Chhhc
Confidence 56898 8999995 689999999999999999999996 99887 8988776 5655 34543
No 174
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.69 E-value=5.1e-06 Score=90.74 Aligned_cols=225 Identities=8% Similarity=0.023 Sum_probs=154.6
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
..|+..++++.....+......+.+++|.+...+|+++.... ..|+..++.++... .+. .....+..+++.+.++.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~-~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA-SFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE-CCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee-cCCCcccCEEEcCCCCE
Confidence 578888888877777766666788999999888898887543 58999998855433 333 23345678889888888
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
|+++... ...|++.++.+.....+. ........+++.|...+|+++.. ....+|++.++++...+.+. .......
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~ 314 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQ 314 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CSSSEEE
T ss_pred EEEEEecCCCceEEEEECCCCCEEeCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe-cCCCccc
Confidence 8887654 456999999876554443 33356778999998777887763 23358999998876554332 2234456
Q ss_pred eEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCC--ceEEEeccCCCc
Q psy8875 638 GLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQK--AIYKANKFTGDN 711 (734)
Q Consensus 638 glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~--~v~~~~~~~G~~ 711 (734)
.+++.+.+++|+++... ...|+.+++++...+.+... ....++++. +..|+++....+ .|+.++.. |+.
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~ 389 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF 389 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc
Confidence 78999888889888654 45899999987776554321 255667773 456776654433 67887754 555
Q ss_pred eEEEe
Q psy8875 712 LTAIT 716 (734)
Q Consensus 712 ~~~l~ 716 (734)
.+.|.
T Consensus 390 ~~~l~ 394 (415)
T 2hqs_A 390 KARLP 394 (415)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 55554
No 175
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.68 E-value=8.9e-07 Score=97.71 Aligned_cols=210 Identities=11% Similarity=0.054 Sum_probs=131.0
Q ss_pred ceEEEecCCcceEEEeeeccCC-eEEEEEeCCCcEEEEecCCCCceEEEE--e----CC-----CCCccceeeecc---C
Q psy8875 494 EMTAIVNSTKSATAIDFVFRTG-MIFWSDISEKKIYKAPIDEGSERTVVI--E----ED-----KTIADGLAVDWI---Y 558 (734)
Q Consensus 494 ~~~~l~~~~~~~~~i~~d~~~~-~lyw~d~~~~~I~~~~l~~g~~~~~~~--~----~~-----~~~p~glAvD~~---~ 558 (734)
.++.++.++..|++|++.+... +||+++. .++|+++..++....+.++ . .+ ...+.|||+++. +
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 4556777889999999998653 7999975 5789888765321111111 1 11 234678999974 6
Q ss_pred CcEEEEeCC--C----------CeEEEEeCCC--------CceEEEEc----CCCCCceeEEEeCCCCeEEEEec--C--
Q psy8875 559 SHIYWTDAH--K----------NTIELANFEG--------TMRKVLVR----SYLDEPRSLALNPIDGWMYWSDW--G-- 610 (734)
Q Consensus 559 ~~lY~td~~--~----------~~I~~~~ldG--------~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~--~-- 610 (734)
+.||++... . .+|.++.++. ...++|+. ........|+++| .|+||++-- +
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~ 162 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMIT 162 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCC
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCC
Confidence 788887542 1 3787777742 12344442 2345667899998 689999941 1
Q ss_pred ------------CCceEEEeccCCCc-------------------eEEEEEcCCCCceeEEEecCCC------eEEEEeC
Q psy8875 611 ------------QNAKIERAGMDGSH-------------------RNMVIVSDIKWPNGLTLDLVQR------RLYWVDA 653 (734)
Q Consensus 611 ------------~~~~I~~~~ldG~~-------------------~~~lv~~~l~~P~glavD~~~~------~LYw~D~ 653 (734)
..++|.|++.||+. +..|....+..|.||++|+.++ +||.+|.
T Consensus 163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence 13689999999941 2346677899999999998754 7787885
Q ss_pred -C----CCeEEEEecCCCce---EEEEc-CCCCCCCCeEEEEECC--------EEEEEeCCCCceEEEecc
Q psy8875 654 -K----LNEISSCDYNGGNR---RLVLY-SPQTLSHPFSISTFED--------WLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 654 -~----~~~I~~~~~dG~~~---~~i~~-~~~~~~~P~gl~v~~~--------~lywtd~~~~~v~~~~~~ 707 (734)
+ ..+|..+. .|.+. ..++. .......|.|++++.+ .+|++++. ++|+++...
T Consensus 243 ~G~~~~~~ei~~i~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~ 311 (463)
T 2wg3_C 243 NGKNRSSARILQII-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQS 311 (463)
T ss_dssp ------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-
T ss_pred CCCCCCCCeEeeec-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeC
Confidence 2 12454442 23211 11221 1111146789998544 48999997 778888643
No 176
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=98.65 E-value=2.1e-08 Score=91.39 Aligned_cols=115 Identities=23% Similarity=0.537 Sum_probs=71.0
Q ss_pred CCCCCceecCCC-CeecC--CcccCCCCCCCCCCCCCCCC--CCCCCCCceecCCCCccccccccccCCCCCCCCCCCCC
Q psy8875 264 TCRSDEFTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQ--PVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338 (734)
Q Consensus 264 ~C~~~~~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~--~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~ 338 (734)
+|......|.++ +|++. +++| .|..|+.+..|+ ...|.. .+|.++++|++
T Consensus 7 eC~~~~~~C~~~g~C~~~~g~~~C----~C~~Gy~G~~C~~~~~~C~~--~~C~~~~~C~~------------------- 61 (135)
T 2vj3_A 7 ECSLGANPCEHAGKCINTLGSFEC----QCLQGYTGPRCEIDVNECVS--NPCQNDATCLD------------------- 61 (135)
T ss_dssp TTTSSSCSSSTTCEEEECSSSEEE----ECCTTEESTTSCEECCTTTT--CCCCSSCEEEE-------------------
T ss_pred cccCCCCCCCCCCEeECCCCCEEE----ECCCCCcCCcccccCccCCC--CCCCCCCEEeC-------------------
Confidence 454333457654 88765 6788 788888888885 344543 25666566665
Q ss_pred CCCCCCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCc
Q psy8875 339 TPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGY 418 (734)
Q Consensus 339 ~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~ 418 (734)
..+.|.| .|+.||.+....-++++|...+......|++++++|+|.|++||
T Consensus 62 ----~~g~~~C-------------------------~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~ 112 (135)
T 2vj3_A 62 ----QIGEFQC-------------------------ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGF 112 (135)
T ss_dssp ----CSSCEEE-------------------------ECCTTEESSSSCEECCTTTTCCSTTTCEEEECSSCEEEECCTTE
T ss_pred ----CCCCcee-------------------------eCCCCCcCCcceecCCcccCCCcCCCCEeECCCCCeEEECCCCC
Confidence 3355667 44555543321114677765433334589999999999999999
Q ss_pred EecCCCCccc-cccCcCCC
Q psy8875 419 KLSSNRHTCI-DIDECETP 436 (734)
Q Consensus 419 ~l~~~~~~C~-~~~eC~~~ 436 (734)
. +..|+ +++||+..
T Consensus 113 ~----G~~C~~~i~~C~~~ 127 (135)
T 2vj3_A 113 T----GHLCQVDLHHILDA 127 (135)
T ss_dssp E----SSSSCEECC-----
T ss_pred c----CCccCccCccccCC
Confidence 4 67895 89999743
No 177
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.63 E-value=9.9e-06 Score=82.25 Aligned_cols=225 Identities=11% Similarity=0.059 Sum_probs=145.5
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
..|+..++.+.....+......+.+++|.+....|++.. .+.|+..++.+ +....+........+..+++.+.++.|
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred eeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 345666666666555555556788999998888777764 67899999885 443332211112456789999888888
Q ss_pred EEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875 562 YWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN 637 (734)
Q Consensus 562 Y~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~ 637 (734)
+++... ...|+..++.+...+.+.. ...+..+++.|...+|+++... ...+|+.+++++.....+. .....+.
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ 176 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGTPRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRND 176 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCCCEECCS--SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEE
T ss_pred EEEEeCCCCcceEEEEECCCCceEEeec--CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccc
Confidence 888743 5788888887766554432 2347788999988888866532 2247888777765544332 3334578
Q ss_pred eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCC----------CCceEE
Q psy8875 638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQ----------QKAIYK 703 (734)
Q Consensus 638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~----------~~~v~~ 703 (734)
.+++++.+..|+++.. ...+|+.+++++...+.+... ......+++ .+.+|+++... ...|+.
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS---AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC---SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC---CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 8999888888888753 455788887777665554321 122344555 34567666542 256888
Q ss_pred EeccCCCceEEE
Q psy8875 704 ANKFTGDNLTAI 715 (734)
Q Consensus 704 ~~~~~G~~~~~l 715 (734)
++..+++...+.
T Consensus 254 ~d~~~~~~~~~~ 265 (297)
T 2ojh_A 254 MDMDGGNVETLF 265 (297)
T ss_dssp EETTSCSCEEEE
T ss_pred EecCCCCceeee
Confidence 887777655444
No 178
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=98.62 E-value=1e-08 Score=76.57 Aligned_cols=43 Identities=35% Similarity=0.786 Sum_probs=39.3
Q ss_pred cccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccCcC
Q psy8875 392 CAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 392 C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
|...+++|+|.|+|+++ +|+|.|++||+|..|+++|.+++||.
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~ 45 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 45 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCcccc
Confidence 55567889999999999 79999999999999999999999984
No 179
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=98.62 E-value=3.7e-08 Score=103.77 Aligned_cols=80 Identities=28% Similarity=0.710 Sum_probs=64.7
Q ss_pred cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc-cccCcCC--CCCcccceeccCCceEEecCCCeeeCCCC
Q psy8875 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI-DIDECET--PGSCSQICLNEKGGFKCECVAGYIKDPHH 464 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~-~~~eC~~--~~~C~~~C~n~~g~~~C~C~~gy~~~~~~ 464 (734)
++++|..+++.-...|.+..++|+|.|++|| .++.|+ +++||.. ..+|.+.|+|+.++|.|.|++||.+..+.
T Consensus 4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~----~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~ 79 (317)
T 3h5c_B 4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDH 79 (317)
T ss_dssp --CCTTSCCCTTTCCCCCCSSSCCCCCSSSC----CSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTS
T ss_pred cCCcCCCCCCCCCCEeECCCCCeEEECCCCC----cCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccc
Confidence 4566765543334579999999999999999 588998 9999986 37899999999999999999999998765
Q ss_pred Cccccccc
Q psy8875 465 PTQCKAAE 472 (734)
Q Consensus 465 ~t~C~~~~ 472 (734)
++ |++.+
T Consensus 80 ~~-C~~~~ 86 (317)
T 3h5c_B 80 KQ-CVPHD 86 (317)
T ss_dssp SC-CEECS
T ss_pred cc-ccccc
Confidence 55 87644
No 180
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.61 E-value=2.4e-06 Score=89.12 Aligned_cols=152 Identities=11% Similarity=-0.046 Sum_probs=102.5
Q ss_pred EEEEEeCCCcEEEEecCCCCceEEEEeCCCC-CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE-EEEcCCC----C
Q psy8875 517 IFWSDISEKKIYKAPIDEGSERTVVIEEDKT-IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK-VLVRSYL----D 590 (734)
Q Consensus 517 lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~-~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~~~~l----~ 590 (734)
++++....+.|+.+++..+.....+...... .|.++++++.++.||++....+.|.+.++...... .+..... .
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 4555556666777776644332222211111 58999999888899999988899999998654433 3332221 2
Q ss_pred CceeEEEeCCCCeEEEEecC----------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 591 EPRSLALNPIDGWMYWSDWG----------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 591 ~P~~iavD~~~g~LYwtd~~----------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
.|.+++++|...+||++..+ ....|.+.++++......+.. -..|.++++++.+++||++ .+.|..
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEE
Confidence 78999999988899999521 247888888876544333333 3468999999888889999 367999
Q ss_pred EecCCCceEEEE
Q psy8875 661 CDYNGGNRRLVL 672 (734)
Q Consensus 661 ~~~dG~~~~~i~ 672 (734)
+++.+......+
T Consensus 159 ~d~~~~~~~~~~ 170 (337)
T 1pby_B 159 MDPEAGTLVEDK 170 (337)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCcEeeee
Confidence 998766544333
No 181
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.61 E-value=8.3e-09 Score=74.85 Aligned_cols=36 Identities=42% Similarity=1.036 Sum_probs=33.2
Q ss_pred CCcccccCcCC-----CCceEeCccccCCCCCCCCCCCCCC
Q psy8875 133 RTCQASEFRCG-----NNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 133 ~~C~~~~f~C~-----~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
..|...+|+|. +++|||.+|+|||..||.|||||.+
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~ 43 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 43 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence 36888999998 7899999999999999999999987
No 182
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.59 E-value=1.9e-06 Score=93.79 Aligned_cols=107 Identities=7% Similarity=0.022 Sum_probs=76.8
Q ss_pred CCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC---------CCCeEEEEeCCCCc
Q psy8875 514 TGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA---------HKNTIELANFEGTM 580 (734)
Q Consensus 514 ~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~---------~~~~I~~~~ldG~~ 580 (734)
..++|+++... +.|..+++..+.....+ ..+ ..| +|++++.++.||+++. ..+.|.++++....
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-DGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-ECC-CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 57899999765 78999998754433333 323 368 9999999999999985 34679999886543
Q ss_pred -eEEEEcC------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 581 -RKVLVRS------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 581 -~~~l~~~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
...|... ....|.+++++|..++||+++......|.++++...
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 3333222 135799999999999999998643467877777543
No 183
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=98.59 E-value=1.9e-08 Score=92.75 Aligned_cols=57 Identities=23% Similarity=0.586 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCc-cccccccCCCCCcCcc-ccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875 375 DCPLMQDEDPTKC-GVDECAKDNGGCLHKC-VDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~~~C-~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC 433 (734)
.|+.||.+. .| ++++|...++.|.+.| ++++++|+|.|++||.|..++++|.+++++
T Consensus 72 ~C~~G~~G~--~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~~~ 130 (146)
T 1x7a_L 72 WCQVGFEGK--NCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF 130 (146)
T ss_dssp ECCSSEEST--TTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEECSSS
T ss_pred ecCCCCcCC--cCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCCCCC
Confidence 555565533 46 5688987777899999 999999999999999999999999988764
No 184
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=98.59 E-value=5.8e-08 Score=101.90 Aligned_cols=107 Identities=30% Similarity=0.699 Sum_probs=63.6
Q ss_pred CCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC
Q psy8875 183 HCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262 (734)
Q Consensus 183 ~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~ 262 (734)
.|+..|.+.+.|.. .+.|.|++||.|..++.. .+. .+|. ++|+|+. ...|. |..|+.+..|+
T Consensus 150 ~C~~~C~~~G~C~~---~~~C~C~~G~~G~~C~~~--~C~-~~C~-------~~G~C~~-~~~C~----C~~G~~G~~C~ 211 (324)
T 2ygq_A 150 ECPGGCRNGGFCNE---RRICECPDGFHGPHCEKA--LCT-PRCM-------NGGLCVT-PGFCI----CPPGFYGVNCD 211 (324)
T ss_dssp CCSSCCCSSCEECT---TSCEECCTTEESSSSCEE--SSS-SCCC-------TTCEECS-SCCEE----CCTTCBTTTTC
T ss_pred CCCCCCCCCCEECC---CCeEECCCCCcCCCCCCC--CCC-CCCC-------CCCEEcC-CCEEe----CCCCccCCCcc
Confidence 45566777777754 478999999999877653 111 2444 3567765 45666 99999998886
Q ss_pred -CCCCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccc
Q psy8875 263 -ETCRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACI 318 (734)
Q Consensus 263 -~~C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci 318 (734)
..|.. .|.++ +|+.. ..| .|..|+.+..|+...|. .+|.++++|+
T Consensus 212 ~~~C~~---~C~~~G~C~~~-~~C----~C~~G~~G~~C~~~~C~---~~C~~~g~C~ 258 (324)
T 2ygq_A 212 KANCST---TCFNGGTCFYP-GKC----ICPPGLEGEQCEISKCP---QPCRNGGKCI 258 (324)
T ss_dssp BCCCSS---CCCSSCCBSCS-SCB----CCCTTCCTTTTC------------------
T ss_pred cCcCCC---CCCCCCeeCCC-Cee----eCCCCccCCCCCcCcCC---CcCCCCCEEC
Confidence 35642 47765 88763 566 78888888888755553 2455544443
No 185
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.57 E-value=8.6e-06 Score=85.40 Aligned_cols=155 Identities=10% Similarity=-0.024 Sum_probs=102.6
Q ss_pred EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc
Q psy8875 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR 586 (734)
Q Consensus 507 ~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~ 586 (734)
++++. ..+.+|++....+.|+.+++..+.....+.......|.++++++.++.||++....+.|.+.++........+.
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 44554 36788888888899999998755433333222222689999998888899999888999999997554433332
Q ss_pred -CC-----CCCceeEEEeCCCCeEEEEecC----------CCceEEEeccCCCc-eE--EEEEcCCCCceeEEEecCCCe
Q psy8875 587 -SY-----LDEPRSLALNPIDGWMYWSDWG----------QNAKIERAGMDGSH-RN--MVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 587 -~~-----l~~P~~iavD~~~g~LYwtd~~----------~~~~I~~~~ldG~~-~~--~lv~~~l~~P~glavD~~~~~ 647 (734)
.. ...|.+++++|...+||++... ....|...++.... .+ .... .-..+.+|++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 21 2348999999988899998732 12578888876421 11 1222 223578888986665
Q ss_pred EEEEeCCCCeEEEEecCCCc
Q psy8875 648 LYWVDAKLNEISSCDYNGGN 667 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~ 667 (734)
||++. +.|..+++....
T Consensus 161 l~~~~---~~i~~~d~~~~~ 177 (349)
T 1jmx_B 161 LYVAG---PDIYKMDVKTGK 177 (349)
T ss_dssp EEEES---SSEEEECTTTCC
T ss_pred EEEcc---CcEEEEeCCCCc
Confidence 88764 238887765443
No 186
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=98.56 E-value=1.1e-08 Score=98.82 Aligned_cols=92 Identities=28% Similarity=0.727 Sum_probs=64.9
Q ss_pred CCCCCCCCC-CCCc-cccccccC--CCCCc--CccccCC-----CcceeecCCCcEecCCCCccccccCcCCCCCcc--c
Q psy8875 375 DCPLMQDED-PTKC-GVDECAKD--NGGCL--HKCVDLP-----VGYMCECNEGYKLSSNRHTCIDIDECETPGSCS--Q 441 (734)
Q Consensus 375 ~C~~g~d~~-~~~C-~~~eC~~~--~~~C~--~~C~~~~-----~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~--~ 441 (734)
.|++||.+. ...| +++||... ...|. ..|++++ ++|+|.|++||.+.. ..|. +++|... +|. .
T Consensus 28 ~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~--~~C~-~d~C~~~-~C~~~g 103 (186)
T 1z1y_A 28 MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE--DTCV-LDVCQYX-NCGESG 103 (186)
T ss_dssp EECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET--TEEE-EGGGTTC-CCCTTE
T ss_pred ECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC--CCCC-CCcCcCC-CCCCCC
Confidence 445555332 2346 67888743 45675 4899999 899999999998853 3676 7889743 464 3
Q ss_pred cee----ccCCceEEecCCCeeeCCCCCccccc
Q psy8875 442 ICL----NEKGGFKCECVAGYIKDPHHPTQCKA 470 (734)
Q Consensus 442 ~C~----n~~g~~~C~C~~gy~~~~~~~t~C~~ 470 (734)
.|+ ++.++|+|.|++||.+.......|..
T Consensus 104 ~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~ 136 (186)
T 1z1y_A 104 ECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTX 136 (186)
T ss_dssp EEEEEEETTEEEEEEEECTEEEEETTTTTEEEE
T ss_pred EEeeCCcCCCCCceEECCCCCcccCCCCCcceE
Confidence 676 89999999999999995422223654
No 187
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=98.54 E-value=8.7e-08 Score=107.95 Aligned_cols=129 Identities=22% Similarity=0.503 Sum_probs=81.1
Q ss_pred cCCC-CeecC---CcccCCCCCCCCCCCC--CCCC-CCCCCCCceecCCCC---ccccccccccCCCCCCCCCCCCCCCC
Q psy8875 272 CANG-NCIQR---IWLCDGDDDCKDGSDE--KSCQ-PVKCTAGQFTCQNLT---ACIPDKWVCDGDTVEKDSTCPNATPM 341 (734)
Q Consensus 272 C~~g-~Ci~~---~~~Cdg~~dC~dgsDe--~~C~-~~~C~~~~~~C~~~~---~Ci~~~~~Cdg~~dC~d~~C~~~~~c 341 (734)
|.++ +|++. +++|- .|..|+.+ ..|+ ...|......|.+++ +|++
T Consensus 11 C~~gg~C~n~~~Gsy~C~---~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvN---------------------- 65 (634)
T 1yo8_A 11 CFPGAQCSSFPDGSWSCG---FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVN---------------------- 65 (634)
T ss_dssp SCTTCCEEECTTSCEEEC---CCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEE----------------------
T ss_pred CCCCCEEecCCCCCeECC---cCCCccCCCCCCccccccccCCCCcccCCccccceee----------------------
Confidence 6665 77764 26662 46777654 5565 334544333365544 4554
Q ss_pred CCCccccccccc-cCCCCCcccccccccccCCCCCCCCCCCCCCCCc-cccccccCCCCCc--CccccCC----Ccceee
Q psy8875 342 NSSVRIEGAVAF-IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKC-GVDECAKDNGGCL--HKCVDLP----VGYMCE 413 (734)
Q Consensus 342 ~~~~~~~C~~~~-~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C-~~~eC~~~~~~C~--~~C~~~~----~~~~C~ 413 (734)
..++|+| . |++||.+..|....... .......| +++||...+..|. +.|++++ ++|+|.
T Consensus 66 -t~gsY~C---~~C~~Gy~G~~c~g~g~~~---------~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~ 132 (634)
T 1yo8_A 66 -TQPGFHC---LPCPPRYRGNQPVGVGLEA---------AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCE 132 (634)
T ss_dssp -CSSSEEE---CCCCTTEEECCCEESSSHH---------HHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEE
T ss_pred -ccCceec---ccCCCCcccCccccccccc---------cccCCCcccccccccCCCcccccCccccccccccccceeee
Confidence 4567888 5 77777655554211000 00122347 7899987667786 5899999 999999
Q ss_pred cCCCcEecCCCCccc---cccCcCC-CCCcc
Q psy8875 414 CNEGYKLSSNRHTCI---DIDECET-PGSCS 440 (734)
Q Consensus 414 C~~G~~l~~~~~~C~---~~~eC~~-~~~C~ 440 (734)
|++||.. ++++|+ +++||.. .+.|.
T Consensus 133 C~~Gy~G--dG~~Ce~d~DiDeC~~~~~~C~ 161 (634)
T 1yo8_A 133 CQTGYAG--DGLICGEDSDLDGWPNLNLVCA 161 (634)
T ss_dssp ECTTEEE--SSSSEEECTTSSSSCSSCCTTT
T ss_pred ccCCccc--cCcccccccCcccccCCCCccc
Confidence 9999986 678996 8999963 35554
No 188
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.54 E-value=2.4e-08 Score=94.80 Aligned_cols=60 Identities=22% Similarity=0.551 Sum_probs=49.0
Q ss_pred ccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcC--CCCCC-Cccccc--CcCCCCceEe
Q psy8875 90 QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK--SCKNR-TCQASE--FRCGNNRCIP 149 (734)
Q Consensus 90 ~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~--~C~~~-~C~~~~--f~C~~g~Ci~ 149 (734)
....|.+.+|+|.+.+|+|||..|+|||..||+||+||. +|... +|.+.+ ++|.++.|+.
T Consensus 49 ~~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d~C~k 113 (220)
T 2gtl_N 49 EGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLA 113 (220)
T ss_dssp HCCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEECSSCC
T ss_pred CCCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCChhhc
Confidence 345788899999643379999999999999999999996 89887 887755 4677777754
No 189
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.53 E-value=1.9e-05 Score=82.56 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=121.4
Q ss_pred ceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCC-------eEEEEEeC--CCcEEEEecCCCCc-eEEE-
Q psy8875 475 ASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTG-------MIFWSDIS--EKKIYKAPIDEGSE-RTVV- 541 (734)
Q Consensus 475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~-------~lyw~d~~--~~~I~~~~l~~g~~-~~~~- 541 (734)
..++++. ...+..++++|.....+.. .++.+|++-+.-. .+|.++.. .++|..+.++..+. .+.+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 3445533 3568888998877766532 5667777655221 57888877 78777766642221 2222
Q ss_pred -----EeCCCCCccceee--eccCCc--EEEEeCCCCeEEEEeC----CCCceEEEEc--CCCCCceeEEEeCCCCeEEE
Q psy8875 542 -----IEEDKTIADGLAV--DWIYSH--IYWTDAHKNTIELANF----EGTMRKVLVR--SYLDEPRSLALNPIDGWMYW 606 (734)
Q Consensus 542 -----~~~~~~~p~glAv--D~~~~~--lY~td~~~~~I~~~~l----dG~~~~~l~~--~~l~~P~~iavD~~~g~LYw 606 (734)
+...+..|.||++ ++.++. +|+++.. +++....+ +|.....++. .....|.++++|+..++||+
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 1234578999999 877774 6666664 77777555 2322222221 22358999999999999999
Q ss_pred EecCCCceEEEeccCCC--c-eEEEEE---cCC-CCceeEEEecCC---CeEEEEeCCCCeEEEEecCCC
Q psy8875 607 SDWGQNAKIERAGMDGS--H-RNMVIV---SDI-KWPNGLTLDLVQ---RRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 607 td~~~~~~I~~~~ldG~--~-~~~lv~---~~l-~~P~glavD~~~---~~LYw~D~~~~~I~~~~~dG~ 666 (734)
.+.. ..||+++.+.. . ++++.. ..+ ..|.||+|.+.. ++|+.++.+.++...++..++
T Consensus 197 ~eEd--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 197 AEED--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp EETT--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred eccc--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 9964 45999996522 2 333322 233 378999996443 589999988888888888654
No 190
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.52 E-value=2.8e-06 Score=94.95 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=130.5
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee-e-ccCCcEEEEeC-----------------CCCeEEEE
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV-D-WIYSHIYWTDA-----------------HKNTIELA 574 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv-D-~~~~~lY~td~-----------------~~~~I~~~ 574 (734)
.++||+.+..+.+|.+++++......++.-.....|.|+++ . +.++.||.+.. ..+.|.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 77999999999999999998543333332223467999998 4 78999999952 23467787
Q ss_pred eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCC-------------c-----------------------eEEEe
Q psy8875 575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQN-------------A-----------------------KIERA 618 (734)
Q Consensus 575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~-------------~-----------------------~I~~~ 618 (734)
+.+......-+.-+ .+|.+++++|..+++|++..... . .|.++
T Consensus 181 D~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 181 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 87754332222112 27999999999999999985431 1 12222
Q ss_pred ccCC---CceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc---------eEEEEcCCCCCCCCeEEEE
Q psy8875 619 GMDG---SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN---------RRLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 619 ~ldG---~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~---------~~~i~~~~~~~~~P~gl~v 686 (734)
+... +.....+.. -..|+|+.+++.+++||+++...++|..++++... +..++........|..+++
T Consensus 260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF 338 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 338 (595)
T ss_dssp ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEE
T ss_pred eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEE
Confidence 2221 110111111 14699999999999999999999999999987321 1112222233457999999
Q ss_pred E-CCEEEEEeCCCCceEEEeccC
Q psy8875 687 F-EDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 687 ~-~~~lywtd~~~~~v~~~~~~~ 708 (734)
. .+++|.+.+-.+.|.+++..+
T Consensus 339 ~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 339 DGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCeEEEEEecCCcEEEEEhhH
Confidence 4 469999999999999888654
No 191
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=98.52 E-value=2.5e-08 Score=83.12 Aligned_cols=54 Identities=33% Similarity=0.667 Sum_probs=43.7
Q ss_pred CCCCCCCC---CCCCc-cccccccCCCCCc-CccccCCCcceeecCCCcEecCCCCccc
Q psy8875 375 DCPLMQDE---DPTKC-GVDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 375 ~C~~g~d~---~~~~C-~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|+.||.. .+..| ++|||...+..|. +.|+|++++|+|.|++||.+.+++++|+
T Consensus 28 ~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~Ci 86 (86)
T 1lmj_A 28 KCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86 (86)
T ss_dssp CCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred eCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCccC
Confidence 56666642 24467 8999998777786 6899999999999999999998888874
No 192
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.52 E-value=3.6e-05 Score=80.53 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=97.3
Q ss_pred cEEEEeCC--CCeEEEEeCCCC--ceEEE------EcCCCCCceeEEE--eCCCCe--EEEEecCCCceEEEecc----C
Q psy8875 560 HIYWTDAH--KNTIELANFEGT--MRKVL------VRSYLDEPRSLAL--NPIDGW--MYWSDWGQNAKIERAGM----D 621 (734)
Q Consensus 560 ~lY~td~~--~~~I~~~~ldG~--~~~~l------~~~~l~~P~~iav--D~~~g~--LYwtd~~~~~~I~~~~l----d 621 (734)
.+|.++.. .++|.++.++.. ..+.+ +...+..|.||++ ++..+. +|+++ +.++++...+ +
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKN 165 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTT
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCC
Confidence 46899988 899998877532 23333 1144588999999 887774 66666 3467766444 3
Q ss_pred CCceEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CC-ceEEEEcC-CCCC-CCCeEEEEE-C----C
Q psy8875 622 GSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GG-NRRLVLYS-PQTL-SHPFSISTF-E----D 689 (734)
Q Consensus 622 G~~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~-~~~~i~~~-~~~~-~~P~gl~v~-~----~ 689 (734)
|.....++. ..-..|.|+++|...++||+++... .|++++.+ +. .++.+... ...+ ..+-||+++ . +
T Consensus 166 g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 166 GYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CcccceEEEEecCCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 322222332 1235799999999999999999875 49999955 32 23433221 1223 378999995 3 5
Q ss_pred EEEEEeCCCCceEEEecc
Q psy8875 690 WLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 690 ~lywtd~~~~~v~~~~~~ 707 (734)
+|++++-+++++..+++.
T Consensus 245 yLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEGGGTEEEEEESS
T ss_pred EEEEEcCCCCEEEEEECC
Confidence 899999988888777764
No 193
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.49 E-value=4.6e-08 Score=94.00 Aligned_cols=66 Identities=27% Similarity=0.600 Sum_probs=48.2
Q ss_pred CCCCCCCCCceecCC--CceecCcCccCCCCCCCCCCccc--ccccC-cccCCceeccCCCCeeeCCCCCCCCCCCCCCC
Q psy8875 50 RSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEK--KCQKR-ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDG 124 (734)
Q Consensus 50 ~~~~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~--~C~~~-~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg 124 (734)
...+|+ +.+|+|.+ |+||+..|+|||..||+|||||. +|... .+...+|.+ . .....|.++
T Consensus 50 ~~~~C~-~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~~g-------~------~~~~~C~~~ 115 (217)
T 2gtl_M 50 EEHHCD-EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG-------L------ATWTSCEDL 115 (217)
T ss_dssp SCCCCC-TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEEEE-------E------EEESSSCSC
T ss_pred CCCCCC-CCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCCcccCCccccc-------c------cCcccCCCC
Confidence 356898 89999965 99999999999999999999997 78654 333333432 1 123367777
Q ss_pred CCcCC
Q psy8875 125 SDEKS 129 (734)
Q Consensus 125 ~de~~ 129 (734)
++|..
T Consensus 116 ~pe~~ 120 (217)
T 2gtl_M 116 NPDHA 120 (217)
T ss_dssp CSEEE
T ss_pred CCCee
Confidence 76653
No 194
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.49 E-value=1.8e-05 Score=91.58 Aligned_cols=231 Identities=8% Similarity=-0.002 Sum_probs=141.1
Q ss_pred eeeee--ccceEEeecC--C-CceEEEec-----CCcceEEEeeeccCCeEEEEEeCC---------CcEEEEecCCC--
Q psy8875 477 LLFAR--KHDIRKISLD--H-HEMTAIVN-----STKSATAIDFVFRTGMIFWSDISE---------KKIYKAPIDEG-- 535 (734)
Q Consensus 477 l~~~~--~~~I~~i~l~--~-~~~~~l~~-----~~~~~~~i~~d~~~~~lyw~d~~~---------~~I~~~~l~~g-- 535 (734)
|+|+. ...|+.++++ + .....+.. ......+++|.+..+.|+++.... ..|++++++++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 55554 3568888887 4 55555544 234567899999888898876431 47999999851
Q ss_pred ---CceEEEEeCCCCCccceeeeccCCcEEEEeCCC-------CeEEEEeCCC-C---ceEEEEcCCCCCceeEEEeCCC
Q psy8875 536 ---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-------NTIELANFEG-T---MRKVLVRSYLDEPRSLALNPID 601 (734)
Q Consensus 536 ---~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-------~~I~~~~ldG-~---~~~~l~~~~l~~P~~iavD~~~ 601 (734)
...+.+.........++++.+.++.|+|+.... ..|+++++++ . ..+.+.......+..+++.|..
T Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 174 ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 233333202334567788998888999887432 4799999984 3 3344443334567888888865
Q ss_pred CeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCC--------ceeEEEecCCCeEEEEe-CCCCeEEEEecCCCceEEE
Q psy8875 602 GWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKW--------PNGLTLDLVQRRLYWVD-AKLNEISSCDYNGGNRRLV 671 (734)
Q Consensus 602 g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~--------P~glavD~~~~~LYw~D-~~~~~I~~~~~dG~~~~~i 671 (734)
. ||++. .....+|++.++++...+.++...... ...+++.+ +++||++- .+..+|+.+++++...+.+
T Consensus 254 ~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 254 S-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGKGAAVLGILDPESGELVDA 331 (662)
T ss_dssp C-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBSSSCEEEEEETTTTEEEEC
T ss_pred e-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEcCccEEEEEECCCCcEEEe
Confidence 5 55554 332348999998665544443322111 24566643 44555543 3555788889887766554
Q ss_pred EcCCCCCCCCeEE-EEECCEEEEEeCCC---CceEEEeccCCCce
Q psy8875 672 LYSPQTLSHPFSI-STFEDWLYWSDWQQ---KAIYKANKFTGDNL 712 (734)
Q Consensus 672 ~~~~~~~~~P~gl-~v~~~~lywtd~~~---~~v~~~~~~~G~~~ 712 (734)
... .....++ +..++.++++-... ..|++++..+|+..
T Consensus 332 ~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 332 AGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred cCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 321 2223455 66777777764432 36888876566543
No 195
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.48 E-value=4.5e-06 Score=93.29 Aligned_cols=234 Identities=11% Similarity=0.077 Sum_probs=147.9
Q ss_pred eeeeee--ccceEEeecCCCceEEEe--cCCcceEEEee-e-ccCCeEEEEE-----------------eCCCcEEEEec
Q psy8875 476 SLLFAR--KHDIRKISLDHHEMTAIV--NSTKSATAIDF-V-FRTGMIFWSD-----------------ISEKKIYKAPI 532 (734)
Q Consensus 476 ~l~~~~--~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~-d-~~~~~lyw~d-----------------~~~~~I~~~~l 532 (734)
+|++.+ ...|.+|+++......++ ++...|.++++ . +.+++||.+. ...+.+..++.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 455554 356999999987765543 45677999997 4 7899999985 22345677777
Q ss_pred CCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC--------------CeEE-----------------------EEe
Q psy8875 533 DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK--------------NTIE-----------------------LAN 575 (734)
Q Consensus 533 ~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~--------------~~I~-----------------------~~~ 575 (734)
+.......+ .-+ ..|.++++++.++.+|+|...+ ..|. +++
T Consensus 183 ~t~~v~~qI-~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID 260 (595)
T 1fwx_A 183 DKWEVAWQV-LVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 260 (595)
T ss_dssp TTTEEEEEE-EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred CCCeEEEEE-EeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence 633222222 212 2799999999999999998664 2233 333
Q ss_pred CCC---Cc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---------e-EEEEE-cCCCCceeEE
Q psy8875 576 FEG---TM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---------R-NMVIV-SDIKWPNGLT 640 (734)
Q Consensus 576 ldG---~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---------~-~~lv~-~~l~~P~gla 640 (734)
... +. ...| .....|.|+++.|...++|.++.+ ...|.+++++-.. + .++.. ..-..|..++
T Consensus 261 ~~~~~~~~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~-s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 261 GRKEASSLFTRYI--PIANNPHGCNMAPDKKHLCVAGKL-SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp CSGGGCCSSEEEE--EEESSCCCEEECTTSSEEEEECTT-SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred CcccCCceeEEEE--ecCCCceEEEEcCCCCEEEEeCCC-CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 321 11 1111 112579999999999999999965 4788887776321 0 11211 1224699999
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCC-------c-eEEEEcCCCCCCCC------eEEEE--ECCEEEEEeCCC-Cce--
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGG-------N-RRLVLYSPQTLSHP------FSIST--FEDWLYWSDWQQ-KAI-- 701 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~-------~-~~~i~~~~~~~~~P------~gl~v--~~~~lywtd~~~-~~v-- 701 (734)
+|+.+ ++|.+-...+.|.+++++.. . ..++-.- ..-.+| .|+++ ++.+||.++..+ .++
T Consensus 338 F~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki-dV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 338 FDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL-DVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp ECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE-ECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred ECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe-ecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 99766 99999998899999998751 1 2222111 111233 33444 688999999876 444
Q ss_pred ---------EEEeccCCCceEEEec
Q psy8875 702 ---------YKANKFTGDNLTAITG 717 (734)
Q Consensus 702 ---------~~~~~~~G~~~~~l~~ 717 (734)
..++. +|..++++..
T Consensus 416 ~gp~~~~~~ql~di-s~~~m~lv~d 439 (595)
T 1fwx_A 416 VGPLKPENDQLIDI-SGDKMVLVHD 439 (595)
T ss_dssp CCSSCCEEEEEEEC-SSSSCEEEEE
T ss_pred CCCCCCCcceEEEc-CCCcEEEEEE
Confidence 34444 5555666643
No 196
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=98.46 E-value=6e-08 Score=86.06 Aligned_cols=74 Identities=30% Similarity=0.718 Sum_probs=57.0
Q ss_pred cccccccCCCCCcCccccC-CCcceeecCCCcEecCCCCccccccCcC---CCCCcccceeccCCceEEecCCCeeeCCC
Q psy8875 388 GVDECAKDNGGCLHKCVDL-PVGYMCECNEGYKLSSNRHTCIDIDECE---TPGSCSQICLNEKGGFKCECVAGYIKDPH 463 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~-~~~~~C~C~~G~~l~~~~~~C~~~~eC~---~~~~C~~~C~n~~g~~~C~C~~gy~~~~~ 463 (734)
++|||.. ..|.+.|+++ +++|+|.|++||.+... ++++|. ..++|.+.|++ .++|.|.|++||.+..
T Consensus 3 dideC~~--~pC~~~C~~~~~g~y~C~C~~Gy~g~~~-----~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~- 73 (118)
T 1dx5_I 3 PVDPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPH-----EPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD- 73 (118)
T ss_dssp CCCGGGG--CCCSSEEEECSSSCEEEECCTTEEEETT-----EEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-
T ss_pred ccccCCC--CCCCCCCCCCCCCCEEeECCCCccccCC-----CCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-
Confidence 5789964 5688899999 99999999999988632 344443 25678889998 5899999999999865
Q ss_pred CCcccccc
Q psy8875 464 HPTQCKAA 471 (734)
Q Consensus 464 ~~t~C~~~ 471 (734)
++. |+.+
T Consensus 74 g~~-C~di 80 (118)
T 1dx5_I 74 GFI-CTDI 80 (118)
T ss_dssp TTE-EEEC
T ss_pred CCc-cccc
Confidence 333 7544
No 197
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=98.45 E-value=8.7e-06 Score=89.77 Aligned_cols=200 Identities=13% Similarity=0.105 Sum_probs=122.3
Q ss_pred cceEEEeeecc---CCeEEEEEeCC------------CcEEEEecCCC-------CceEEEEe----CCCCCccceeeec
Q psy8875 503 KSATAIDFVFR---TGMIFWSDISE------------KKIYKAPIDEG-------SERTVVIE----EDKTIADGLAVDW 556 (734)
Q Consensus 503 ~~~~~i~~d~~---~~~lyw~d~~~------------~~I~~~~l~~g-------~~~~~~~~----~~~~~p~glAvD~ 556 (734)
....+|++++. ++.||++-... .+|.|+.+..+ ...++++. ........|++++
T Consensus 69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp 148 (463)
T 2wg3_C 69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP 148 (463)
T ss_dssp CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT
T ss_pred CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC
Confidence 45788999974 67899875421 37888887532 11334432 1234455799996
Q ss_pred cCCcEEEEeCC-----------------CCeEEEEeCCCCc-------------------eEEEEcCCCCCceeEEEeCC
Q psy8875 557 IYSHIYWTDAH-----------------KNTIELANFEGTM-------------------RKVLVRSYLDEPRSLALNPI 600 (734)
Q Consensus 557 ~~~~lY~td~~-----------------~~~I~~~~ldG~~-------------------~~~l~~~~l~~P~~iavD~~ 600 (734)
.++||++--. .++|.|++.+|.. +..|+...+.+|.+|++||.
T Consensus 149 -DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 149 -DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH 227 (463)
T ss_dssp -TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred -CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence 5799998322 4679999999941 22355678999999999998
Q ss_pred CC------eEEEEec-CC---CceEEEeccCCCc---eEEEEE-cCC--CCceeEEEec------CCCeEEEEeCCCCeE
Q psy8875 601 DG------WMYWSDW-GQ---NAKIERAGMDGSH---RNMVIV-SDI--KWPNGLTLDL------VQRRLYWVDAKLNEI 658 (734)
Q Consensus 601 ~g------~LYwtd~-~~---~~~I~~~~ldG~~---~~~lv~-~~l--~~P~glavD~------~~~~LYw~D~~~~~I 658 (734)
++ +||.+|. +. ...|..+.. |.+ ...++. ..- ..|.|+++-. ..+.+|+++.. ++|
T Consensus 228 tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i 305 (463)
T 2wg3_C 228 PTDININLTILCSDSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNF 305 (463)
T ss_dssp CSSTTCSEEEEEECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCE
T ss_pred CCCcccceEEEecccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcE
Confidence 64 7888885 32 134555422 221 111221 111 3578888821 23468899986 789
Q ss_pred EEEecCCCc---eEEEE-cC------CCCCCCCeEEEEE-CCEEEEEeC-------CCCceEEEe
Q psy8875 659 SSCDYNGGN---RRLVL-YS------PQTLSHPFSISTF-EDWLYWSDW-------QQKAIYKAN 705 (734)
Q Consensus 659 ~~~~~dG~~---~~~i~-~~------~~~~~~P~gl~v~-~~~lywtd~-------~~~~v~~~~ 705 (734)
+++.++... ...++ .. ......|.+|++. .+.||++++ ..++|+|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 306 LTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred EEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 999886542 22222 11 1224568888884 689999997 467888885
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.44 E-value=0.0001 Score=79.12 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=113.8
Q ss_pred cceEEeecCCCceEEEec-C-------CcceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875 483 HDIRKISLDHHEMTAIVN-S-------TKSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDKTIADGLA 553 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~-~-------~~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~~~p~glA 553 (734)
..|..+++........++ . ...|.++++++..++||+++.. .+.|..++ ..+.....++. .|..+.
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~~~ 171 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTCYH 171 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCceEE
Confidence 346677765443322221 1 2457889999999999999865 57788888 65433222011 111111
Q ss_pred e------------------------------------------------eccCCcEEEEeCCCCeEEEEeCCCCceEEEE
Q psy8875 554 V------------------------------------------------DWIYSHIYWTDAHKNTIELANFEGTMRKVLV 585 (734)
Q Consensus 554 v------------------------------------------------D~~~~~lY~td~~~~~I~~~~ldG~~~~~l~ 585 (734)
+ ....+.+||+. ..+.|.++++.+...+++.
T Consensus 172 ~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~ 250 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA 250 (373)
T ss_pred EEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee
Confidence 1 11123334433 2345666665443222211
Q ss_pred c---------CCCCCcee---EEEeCCCCeEEEEecC--------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCC
Q psy8875 586 R---------SYLDEPRS---LALNPIDGWMYWSDWG--------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ 645 (734)
Q Consensus 586 ~---------~~l~~P~~---iavD~~~g~LYwtd~~--------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~ 645 (734)
. .....|.+ +++++..++||++... ....|+++++.......-+. .-..|.+|++++.+
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg 329 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDG 329 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCC
Confidence 0 01123555 8999999999998631 12579998887544322222 22369999999888
Q ss_pred C-eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC
Q psy8875 646 R-RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE 688 (734)
Q Consensus 646 ~-~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~ 688 (734)
+ +||.+....+.|..+++........+. .....|.+|.+.+
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~vv~~i~--~vG~~P~~~~~~~ 371 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQDQSTV--ELGSGPQVLSVMN 371 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCEEeeec--CCCCCCcEEEEcc
Confidence 8 788887778999999987654433311 2345788887654
No 199
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=98.39 E-value=6.5e-08 Score=84.02 Aligned_cols=53 Identities=34% Similarity=0.853 Sum_probs=7.2
Q ss_pred CCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875 375 DCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 375 ~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|+.||.. ++..| ++|||.. +..|.+.|+|++++|+|.|++||.+..++++|+
T Consensus 53 ~C~~Gy~g~~g~~C~dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C~ 107 (107)
T 2w2n_E 53 LCPDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107 (107)
T ss_dssp ECCTTCEEETTTEEEC----------------------------------------
T ss_pred ECCCCccccCCCccccccccCC-CCCcCCeeecCCCCEEEECCCCceECCCCCccC
Confidence 45555543 22356 7999973 467889999999999999999999998888874
No 200
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=98.38 E-value=6.7e-08 Score=91.64 Aligned_cols=50 Identities=26% Similarity=0.726 Sum_probs=42.4
Q ss_pred CcceeecCCCcEecCCCCccc-cccCcCCCCCccc--ceecc-CCceEEecCCCeeeC
Q psy8875 408 VGYMCECNEGYKLSSNRHTCI-DIDECETPGSCSQ--ICLNE-KGGFKCECVAGYIKD 461 (734)
Q Consensus 408 ~~~~C~C~~G~~l~~~~~~C~-~~~eC~~~~~C~~--~C~n~-~g~~~C~C~~gy~~~ 461 (734)
++|+|.|++||. +..|+ ++++|....+|++ +|+++ .++|+|.|++||.+.
T Consensus 112 ~~~~C~C~~G~~----G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~ 165 (169)
T 2vj2_A 112 EPWQCLCETNWG----GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165 (169)
T ss_dssp STTCCEECTTEE----TTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCST
T ss_pred CCCEEeCCCCCC----CCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCc
Confidence 579999999995 67897 8899976567864 89997 899999999999874
No 201
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=98.38 E-value=1.6e-07 Score=78.39 Aligned_cols=55 Identities=33% Similarity=0.896 Sum_probs=43.4
Q ss_pred CCCCCCCC--CCCCc-cccccccCCCCCcCccccCCCcceeec--CCCcEecCCCCcccccc
Q psy8875 375 DCPLMQDE--DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCEC--NEGYKLSSNRHTCIDID 431 (734)
Q Consensus 375 ~C~~g~d~--~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C--~~G~~l~~~~~~C~~~~ 431 (734)
.|+.||.. .+..| +++||.. ..|.+.|+|++++|+|.| .+||.+..+++.|++|+
T Consensus 28 ~C~~G~~~~~~g~~C~dideC~~--~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~di~ 87 (87)
T 1z6c_A 28 ECPEGYRYNLKSKSCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87 (87)
T ss_dssp SSSTTCEEETTTTEEECCCHHHH--SCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCBCCC
T ss_pred ECCCCceECCCCCcCCCcCeeCC--CCCCCEEEccCCCEEEECCCCcCCcccCCCCcceECc
Confidence 56666642 23457 7999975 468899999999999999 68999988889998774
No 202
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=98.38 E-value=8.2e-08 Score=92.32 Aligned_cols=55 Identities=29% Similarity=0.656 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCc--cc-cccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccccc
Q psy8875 375 DCPLMQDEDPTKC--GV-DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDID 431 (734)
Q Consensus 375 ~C~~g~d~~~~~C--~~-~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~ 431 (734)
.|+.||.+. .| ++ ++|...++.|.+.|++++++|+|.|++||.|..++++|.+++
T Consensus 66 ~C~~Gf~G~--~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 66 TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (195)
T ss_dssp -----------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred eCCCCceec--cccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccCC
Confidence 566666543 46 25 789877788999999999999999999999999999998764
No 203
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=98.37 E-value=2.7e-07 Score=77.57 Aligned_cols=72 Identities=18% Similarity=0.406 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc--cccCcCCCCCccc--ceeccC--C
Q psy8875 375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI--DIDECETPGSCSQ--ICLNEK--G 448 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~--~~~eC~~~~~C~~--~C~n~~--g 448 (734)
.|++||.+. .|++++|... .|++..++|+|.|++||. .|+ ++++|.. .+|.+ +|+++. +
T Consensus 5 ~C~~g~~g~--~c~~~~c~~~------pC~n~~~~y~C~C~~G~~------~C~~~~~~~C~~-~pC~ngg~C~~~~~~~ 69 (91)
T 1tpg_A 5 ICRDEKTQM--IYQQHQSWLR------PVLRSNRVEYCWCNSGRA------QCHSVPVKSCSE-PRCFNGGTCQQALYFS 69 (91)
T ss_dssp CCBCSSSCC--BCCSSCEEEE------ECSSSSCEEEEECSSSCC------BCCEECEEECSS-CCSCTTCEEEEESSSS
T ss_pred ECCCCCcCC--eECCCcccCC------ccccCCCCcEeECCCCCc------ccccCcCCcccC-CCCCCCCEeecCCCCC
Confidence 678888664 4688888643 377889999999999994 785 7899974 46854 799988 9
Q ss_pred ceEEecCCCeeeC
Q psy8875 449 GFKCECVAGYIKD 461 (734)
Q Consensus 449 ~~~C~C~~gy~~~ 461 (734)
+|.|.|++||.+.
T Consensus 70 ~~~C~C~~G~~G~ 82 (91)
T 1tpg_A 70 DFVCQCPEGFAGK 82 (91)
T ss_dssp CEEEECCTTCBSS
T ss_pred CeEeECCCCCcCC
Confidence 9999999999864
No 204
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.37 E-value=7.7e-08 Score=92.46 Aligned_cols=68 Identities=29% Similarity=0.619 Sum_probs=48.8
Q ss_pred ccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcC--CCCCC-CcccccCcCCCCceEeCccccCCCCCCCCCCCC
Q psy8875 90 QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK--SCKNR-TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166 (734)
Q Consensus 90 ~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~--~C~~~-~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde 166 (734)
....|++.+|+|.+.+|+|||..|+|||..||.|||||. +|... ++...+|.+ . ..+..|.++++|
T Consensus 50 ~~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~~g-----~------~~~~~C~~~~pe 118 (217)
T 2gtl_M 50 EEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG-----L------ATWTSCEDLNPD 118 (217)
T ss_dssp SCCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEEEE-----E------EEESSSCSCCSE
T ss_pred CCCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCCcccCCccccc-----c------cCcccCCCCCCC
Confidence 345789999999752379999999999999999999998 78554 333333322 1 233468777776
Q ss_pred CC
Q psy8875 167 DP 168 (734)
Q Consensus 167 ~~ 168 (734)
.-
T Consensus 119 ~~ 120 (217)
T 2gtl_M 119 HA 120 (217)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 205
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=98.37 E-value=9.2e-08 Score=86.89 Aligned_cols=56 Identities=29% Similarity=0.646 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCc-c-c-cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccC
Q psy8875 375 DCPLMQDEDPTKC-G-V-DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE 432 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~-~-~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~e 432 (734)
.|+.||.+. .| + + ++|...++.|.+.|++++++|+|.|++||.|..++++|.++++
T Consensus 66 ~C~~G~~G~--~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~~ 124 (134)
T 2vh0_B 66 TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124 (134)
T ss_dssp -----------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred eCCCCccCC--ccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCCC
Confidence 566666543 45 2 5 7898767789999999999999999999999999999988754
No 206
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.36 E-value=2.1e-05 Score=85.07 Aligned_cols=202 Identities=10% Similarity=0.020 Sum_probs=130.0
Q ss_pred ccCCeEEEEEeCCCcEEEEecCCC--Cc--eEEEE------eCCCCCccceeeeccCCcEEEEeCCC------CeEEEEe
Q psy8875 512 FRTGMIFWSDISEKKIYKAPIDEG--SE--RTVVI------EEDKTIADGLAVDWIYSHIYWTDAHK------NTIELAN 575 (734)
Q Consensus 512 ~~~~~lyw~d~~~~~I~~~~l~~g--~~--~~~~~------~~~~~~p~glAvD~~~~~lY~td~~~------~~I~~~~ 575 (734)
...++||+....+.+|+.+++... .. .+++- ..+...|.++++-+.+ ||++..+. +.|.+.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 557889999999999999987522 11 22220 1244578888887554 99987664 6899988
Q ss_pred CCCCceEEEEc-CCC--CCceeEEEeCCCCeEEEEecC-----------------CCceEEEeccCCCceEEEEEcC--C
Q psy8875 576 FEGTMRKVLVR-SYL--DEPRSLALNPIDGWMYWSDWG-----------------QNAKIERAGMDGSHRNMVIVSD--I 633 (734)
Q Consensus 576 ldG~~~~~l~~-~~l--~~P~~iavD~~~g~LYwtd~~-----------------~~~~I~~~~ldG~~~~~lv~~~--l 633 (734)
.......--+. ... ..+.++.+.|..+.||.++|+ ...+|...+++.......+... -
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 87544333222 212 223346668888999999986 2468888888753222222221 1
Q ss_pred CCceeEEE--ecCCCeEEEEeC-----CCCeEEEEecCCCce---EEE-EcC---CCC-----------CCCCeEEEE--
Q psy8875 634 KWPNGLTL--DLVQRRLYWVDA-----KLNEISSCDYNGGNR---RLV-LYS---PQT-----------LSHPFSIST-- 686 (734)
Q Consensus 634 ~~P~glav--D~~~~~LYw~D~-----~~~~I~~~~~dG~~~---~~i-~~~---~~~-----------~~~P~gl~v-- 686 (734)
..|..|++ ++.+.++|++.. ..+.|+++.+++... ++| +.. ... ...|.+|.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 35777766 888999999988 778898887775321 111 110 000 145777877
Q ss_pred ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 687 ~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++.+||+++|+.+.|..++..+....+++
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv 359 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLT 359 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 67899999999999988876544434444
No 207
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.35 E-value=3.3e-05 Score=82.55 Aligned_cols=195 Identities=7% Similarity=-0.059 Sum_probs=119.8
Q ss_pred CCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC---------CCCeEEEEeCCCCc
Q psy8875 514 TGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA---------HKNTIELANFEGTM 580 (734)
Q Consensus 514 ~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~---------~~~~I~~~~ldG~~ 580 (734)
..++|+++...+ .|..++++.+.....+ ..+ ..| +|++.+.++.||+++. ..+.|.++++....
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i-~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-LGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEE-eCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 467899988766 7778887744333333 223 358 9999999999999984 35789999986544
Q ss_pred -eEEEEcC------CCCCceeEEEeCCCCeEEEEecCCCceEEE--eccCCCceE-------------------------
Q psy8875 581 -RKVLVRS------YLDEPRSLALNPIDGWMYWSDWGQNAKIER--AGMDGSHRN------------------------- 626 (734)
Q Consensus 581 -~~~l~~~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~--~~ldG~~~~------------------------- 626 (734)
...|... ....|.+|+++|..++||+++.+....|.+ +++.. .++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCC
Confidence 3333222 135799999999999999998653345666 44422 111
Q ss_pred -EEEEcCC-------------------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-------CCC
Q psy8875 627 -MVIVSDI-------------------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-------TLS 679 (734)
Q Consensus 627 -~lv~~~l-------------------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-------~~~ 679 (734)
+++...- ..|. + ....+++||+.. +.|..+++.+...+++..-.. ...
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 0111000 1122 2 334567777776 788888887654444321100 011
Q ss_pred CCeE---EEE--ECCEEEEEeC---C-----CCceEEEeccCCCceEEEec
Q psy8875 680 HPFS---IST--FEDWLYWSDW---Q-----QKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 680 ~P~g---l~v--~~~~lywtd~---~-----~~~v~~~~~~~G~~~~~l~~ 717 (734)
.|.+ +++ .+++||++.. + .+.+..++..+++.+..|..
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence 2333 444 6789999875 3 34566888888877666643
No 208
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=98.35 E-value=1.8e-07 Score=82.47 Aligned_cols=44 Identities=34% Similarity=0.705 Sum_probs=38.7
Q ss_pred ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccC
Q psy8875 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE 432 (734)
Q Consensus 389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~e 432 (734)
+++|...+++|.+.|++++++|+|.|++||.+..++++|+++.+
T Consensus 54 ~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~~ 97 (114)
T 1aut_L 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 97 (114)
T ss_dssp SSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred CCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCcc
Confidence 35788777889999999999999999999999999999987654
No 209
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.35 E-value=5.6e-05 Score=80.73 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=112.9
Q ss_pred cceEEeecCCCceEEEec-------CCcceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCC-----CCc
Q psy8875 483 HDIRKISLDHHEMTAIVN-------STKSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDK-----TIA 549 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~-------~~~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~-----~~p 549 (734)
..|..+++........+. ....|.+|++++..++||+++.. .+.|..+++..+.....++.... ..|
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p 160 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP 160 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence 347777766544332222 12467889999989999999876 67888888764422211011000 011
Q ss_pred cc----eeeeccCCcEEEEeC-------------------------------------CCCeEEEEeCCCCceEEEEc--
Q psy8875 550 DG----LAVDWIYSHIYWTDA-------------------------------------HKNTIELANFEGTMRKVLVR-- 586 (734)
Q Consensus 550 ~g----lAvD~~~~~lY~td~-------------------------------------~~~~I~~~~ldG~~~~~l~~-- 586 (734)
.+ +++...+..+||+.. ..++|.++++.+....++..
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 11 333322222232221 12345555554332222110
Q ss_pred -------CCCCCce---eEEEeCCCCeEEEEec--C-------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 587 -------SYLDEPR---SLALNPIDGWMYWSDW--G-------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 587 -------~~l~~P~---~iavD~~~g~LYwtd~--~-------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
.....|. .+++++..++||++.. + ....|+++++........+...- |.+|++++.+++
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence 0011233 4999999999999863 1 12478888876543332233222 999999999999
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE
Q psy8875 648 LYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~ 687 (734)
||.+.. +.|..+++.....+++..-......|.+|++.
T Consensus 319 l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 319 MLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp EEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred EEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 998885 89999987765223333211335689988874
No 210
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=98.34 E-value=6.6e-08 Score=89.55 Aligned_cols=54 Identities=28% Similarity=0.663 Sum_probs=46.0
Q ss_pred CCCCCCCC-CCCCc-cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccc
Q psy8875 375 DCPLMQDE-DPTKC-GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 375 ~C~~g~d~-~~~~C-~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|+.||.. .+..| ++|||...++.|.+ .|+|++++|+|.|++||.+..++++|+
T Consensus 91 ~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 91 ICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp TTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred cCCCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 79999952 23467 89999987778875 899999999999999999998998884
No 211
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.33 E-value=1.2e-05 Score=81.56 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=126.1
Q ss_pred eeeeeeccceEEeecCC-CceEEEecCC--cceEEEeeeccCCeEEEEEeC---CCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 476 SLLFARKHDIRKISLDH-HEMTAIVNST--KSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~-~~~~~l~~~~--~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
+|++.....|+.+++.+ .....+.... ..+..++|.+....|+++... ...|+.+++.++. ...+. ....+
T Consensus 55 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~ 131 (297)
T 2ojh_A 55 YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPS 131 (297)
T ss_dssp EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSE
T ss_pred EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCc
Confidence 45666677888888887 6665554332 455678898888888887643 4678888887443 22222 22336
Q ss_pred cceeeeccCCcEEEEeCCCC--eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceE
Q psy8875 550 DGLAVDWIYSHIYWTDAHKN--TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRN 626 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~--~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~ 626 (734)
..+++.+.++.|+++....+ +|+.+++.+.....+. .....+..++++|...+|+++.. ....+|+..++++....
T Consensus 132 ~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 132 YWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred cceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 67788877888887665445 5666666665544433 33456789999998877887753 33468888887776554
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCC----------CCeEEEEecCCCceEEEE
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAK----------LNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~----------~~~I~~~~~dG~~~~~i~ 672 (734)
.+. ........+++++.+.+|+++... ...|+.+++++...+.+.
T Consensus 211 ~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 211 RIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp ECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 432 222345678888888888877542 256899998877655544
No 212
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=98.31 E-value=4.6e-07 Score=83.35 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875 375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|+.||.+..+.-++++|...+....+.|++++++|+|.|++||. +..|.
T Consensus 83 ~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~c~ 132 (143)
T 4d90_A 83 KCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFM----GRNCQ 132 (143)
T ss_dssp ECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCB----STTSC
T ss_pred ECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCc----cCCce
Confidence 677777654322268889866555556999999999999999994 55554
No 213
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=98.30 E-value=3.3e-07 Score=86.88 Aligned_cols=148 Identities=21% Similarity=0.472 Sum_probs=82.4
Q ss_pred CCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC-CCCCCCceec--CCC
Q psy8875 199 PKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTC--ANG 275 (734)
Q Consensus 199 ~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~-~~C~~~~~~C--~~g 275 (734)
..+.|.|++||.|..++..|... ..|. +.++| +. ..+|. |..|+.+..|+ ..|... | .+|
T Consensus 15 ~~~~c~C~~g~~G~~C~~~C~~~--~~c~--~~g~C-----~~-~g~C~----C~~G~~G~~C~~~~C~~~---C~~~~g 77 (169)
T 2vj2_A 15 GRSAVTCDDYYYGFGCNKFCRPR--DDFF--GHYAC-----DQ-NGNKT----CMEGWMGPECNRAICRQG---CSPKHG 77 (169)
T ss_dssp ------CCTTEETTTTCEECCCE--EETT--EEEEE-----CS-SCCEE----ECTTEESTTSCEECCCTT---CCTTTE
T ss_pred cCeeeeCCCcCcCCCcccccCCC--CCcC--CCCEe-----CC-CCeeE----CCCCCcCCCCCCCCCCCC---CCCCCc
Confidence 46789999999998877644321 1232 23444 32 23343 89999988886 456542 5 566
Q ss_pred CeecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccC
Q psy8875 276 NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIP 355 (734)
Q Consensus 276 ~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~ 355 (734)
.|+. .+.| .|..|+.+..|+. |.... .|.+ ++|+ ..|.|
T Consensus 78 ~C~~-~~~C----~C~~G~~G~~C~~--C~~~~-~C~~-g~C~--------------------------~~~~C------ 116 (169)
T 2vj2_A 78 SCKL-PGDC----RCQYGWQGLYCDK--CIPHP-GCVH-GICN--------------------------EPWQC------ 116 (169)
T ss_dssp ECSS-TTCC----EECTTEESSSSCE--ECCCT-TCSS-EECS--------------------------STTCC------
T ss_pred ccCC-CCee----ECCCCCCCCCccc--CCCCC-CCCC-CCcC--------------------------CCCEE------
Confidence 7776 4666 7888888777752 21110 1221 1111 12344
Q ss_pred CCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCc--CccccC-CCcceeecCCCcEecCCCCccc
Q psy8875 356 PGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCL--HKCVDL-PVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 356 ~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~--~~C~~~-~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|++||.+....-++++|.. ...|. ..|+++ +++|+|.|++|| .+..|+
T Consensus 117 -------------------~C~~G~~G~~C~~~~~~C~~-~~~C~~~g~C~~~~~~~~~C~C~~G~----~G~~Ce 168 (169)
T 2vj2_A 117 -------------------LCETNWGGQLCDKDLNYCGT-HQPCLNGGTCSNTGPDKYQCSCPEGY----SGPNCE 168 (169)
T ss_dssp -------------------EECTTEETTTTCEESCHHHH-TCCCCTTCEEEECSTTCEEEECCTTC----CSTTSC
T ss_pred -------------------eCCCCCCCCcccCCCCCCCC-CCCCCCCCEEcCCCCCCcEeECCCCC----cCcCcC
Confidence 45555554321114677764 23554 479997 899999999999 455553
No 214
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.29 E-value=6.5e-05 Score=80.21 Aligned_cols=226 Identities=11% Similarity=-0.012 Sum_probs=131.5
Q ss_pred ceEEeecCCCceEEEecCCcceE-EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc--ceeeeccCCc
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSAT-AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD--GLAVDWIYSH 560 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~-~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~--glAvD~~~~~ 560 (734)
.|+.+++.+.....+........ +++|.+...+|+++.. ...|+++++.++..+. +......... ..++++....
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~dg~~ 138 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEENV-VYQVPAEWVGYGTWVANSDCTK 138 (388)
T ss_dssp EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEEE-EEECCTTEEEEEEEEECTTSSE
T ss_pred eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCccee-eeechhhcccccceeECCCCCe
Confidence 38888888877766655433332 5678888888998874 4679999998654433 3321111111 1223434444
Q ss_pred EEEEe---------------------CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeC-CCCeEEEEecCC----Cce
Q psy8875 561 IYWTD---------------------AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQ----NAK 614 (734)
Q Consensus 561 lY~td---------------------~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~----~~~ 614 (734)
|+... .....|++.++.+...+.+.. .......+++.| ...+|.++..+. ..+
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 43221 123678899988766665553 234567899999 666776665332 358
Q ss_pred EEEeccCCCceEEEEEcCC-CCceeEEEecCCCeEEEEe-C-CCC--eEEEEecCCCceEEEEcCCCC-----CCCCeEE
Q psy8875 615 IERAGMDGSHRNMVIVSDI-KWPNGLTLDLVQRRLYWVD-A-KLN--EISSCDYNGGNRRLVLYSPQT-----LSHPFSI 684 (734)
Q Consensus 615 I~~~~ldG~~~~~lv~~~l-~~P~glavD~~~~~LYw~D-~-~~~--~I~~~~~dG~~~~~i~~~~~~-----~~~P~gl 684 (734)
|+..+++|...+.+..... .....+++.+.+.+|+++. . ... .|+.+++.+...+.+...... ......+
T Consensus 218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 297 (388)
T 3pe7_A 218 MWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM 297 (388)
T ss_dssp EEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred EEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence 9999998877665543221 1234578888888786653 2 222 399999988776666432210 0111234
Q ss_pred EEECCEEEEEe--------CCCCceEEEeccCCCce
Q psy8875 685 STFEDWLYWSD--------WQQKAIYKANKFTGDNL 712 (734)
Q Consensus 685 ~v~~~~lywtd--------~~~~~v~~~~~~~G~~~ 712 (734)
+-++.+|+++- .+...|+.++..+|+..
T Consensus 298 spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 298 VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp EEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred ccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 44566666543 44557888877665543
No 215
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=98.29 E-value=2.1e-09 Score=107.36 Aligned_cols=175 Identities=11% Similarity=-0.023 Sum_probs=118.6
Q ss_pred eecCCC-CeecC--CcccCCCCCCCCCCCCCCCCCC--C------CCCCceecCCCCccccccccccCCCCCCCCCCCCC
Q psy8875 270 FTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQPV--K------CTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338 (734)
Q Consensus 270 ~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~~~--~------C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~ 338 (734)
..|.+| +|++. +|.| +|+.|+.+.+|+.. . |.+ -+|+++++|+. +..|....+|.+.+|.+.
T Consensus 38 ~~c~ngG~C~~g~~~y~C----~Cp~Gf~G~~Ce~ni~ec~~~~~c~s--~pC~nggtc~~-G~~c~~~~eC~s~pC~ng 110 (267)
T 4fbr_A 38 IKSDDGGKTLKGTMTYNG----EGPIGFRGTLSSANNYTVENQWGGTS--APWQPGGVWVL-GARDKQNIVAVSIKSNDG 110 (267)
T ss_dssp EECSSTTSEEEEEEEETT----SCCEEEEEEECSTTEEEEEEESSSTT--SCEEEEEEEEC-CCCSSCCEEEEEEECSST
T ss_pred CCcCCCCeecCCCCCeEE----eCCCCcccccccccccccccccCcCC--CcccCCCeeec-cCccccccccCCCCCCCC
Confidence 467777 99876 8999 99999999999742 2 333 36777777754 567887888888889888
Q ss_pred CCCC-CCccccccccccCCCCCcccccccccccCCCC-----CCCCC---CCCCCCCcccc-ccccCCCCCcCccccCCC
Q psy8875 339 TPMN-SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHP-----DCPLM---QDEDPTKCGVD-ECAKDNGGCLHKCVDLPV 408 (734)
Q Consensus 339 ~~c~-~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~-----~C~~g---~d~~~~~C~~~-eC~~~~~~C~~~C~~~~~ 408 (734)
.+|. ...+|.| .|++||++..|......|.... .|..+ +++. .|+.+ +|...+..-..+|++...
T Consensus 111 G~C~~~~~sy~C---~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~--~c~~~i~c~~~~c~ngg~C~dg~~ 185 (267)
T 4fbr_A 111 GKTLTGTTTYNG---EGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGT--RGKQNVINVDAKSNDGGKTLSGTM 185 (267)
T ss_dssp TSEEEEEEEETT---SCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCS--STTSCEEEEEEECSSTTSEEEEEE
T ss_pred CEEecCCccEEe---eCCCCccccCCCCCcccccccCCcCCccccCCcceeccc--ccccccccCCCCCCCCCEeeCCCC
Confidence 8884 5678999 8999999988887666543222 22222 2222 34322 333333333448999999
Q ss_pred cceeecCCCcEecCCCCccc-cccCcCCCCCcccceeccCCceEEecCCCeee
Q psy8875 409 GYMCECNEGYKLSSNRHTCI-DIDECETPGSCSQICLNEKGGFKCECVAGYIK 460 (734)
Q Consensus 409 ~~~C~C~~G~~l~~~~~~C~-~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~ 460 (734)
+|+|.|++||+ ++.|. +++||+.+..|...+-+..+.+.+.|+.++..
T Consensus 186 ~y~C~Cp~Gf~----G~~c~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~ 234 (267)
T 4fbr_A 186 TYNGEGPIGFR----GTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNV 234 (267)
T ss_dssp EETTSCCEEEE----EEEEETTEEEEEEECSCTTSCCEEEEEEECCCCTTCCE
T ss_pred CeEEeCCCCcc----ccccccccceeccCCCccCCcccCCCeEEEecCCCCcc
Confidence 99999999995 45775 46777655556554444456677777777644
No 216
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=98.29 E-value=6.1e-07 Score=94.12 Aligned_cols=152 Identities=25% Similarity=0.623 Sum_probs=65.1
Q ss_pred ecCC-CceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCccccc
Q psy8875 61 RCTG-GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASE 139 (734)
Q Consensus 61 ~C~~-g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~ 139 (734)
.|.+ |.|+. .+...|.+|+.+..|+...|.+ .|.++ |.|+. .+...|..|+.+..|....|.
T Consensus 154 ~C~~~G~C~~-----~~~C~C~~G~~G~~C~~~~C~~---~C~~~-G~C~~-----~~~C~C~~G~~G~~C~~~~C~--- 216 (324)
T 2ygq_A 154 GCRNGGFCNE-----RRICECPDGFHGPHCEKALCTP---RCMNG-GLCVT-----PGFCICPPGFYGVNCDKANCS--- 216 (324)
T ss_dssp CCCSSCEECT-----TSCEECCTTEESSSSCEESSSS---CCCTT-CEECS-----SCCEECCTTCBTTTTCBCCCS---
T ss_pred CCCCCCEECC-----CCeEECCCCCcCCCCCCCCCCC---CCCCC-CEEcC-----CCEEeCCCCccCCCcccCcCC---
Confidence 3664 68886 2456799999999998777864 68876 89986 356689999999999776775
Q ss_pred CcCCC-CceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCcccc
Q psy8875 140 FRCGN-NRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218 (734)
Q Consensus 140 f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~ 218 (734)
-.|.+ |+|+.. +...|..|+.+.. |+. ..|..+|.+.+.|.. .++|.|++||.|..++..
T Consensus 217 ~~C~~~G~C~~~-----~~C~C~~G~~G~~--------C~~--~~C~~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~- 277 (324)
T 2ygq_A 217 TTCFNGGTCFYP-----GKCICPPGLEGEQ--------CEI--SKCPQPCRNGGKCIG---KSKCKCSKGYQGDLCSKP- 277 (324)
T ss_dssp SCCCSSCCBSCS-----SCBCCCTTCCTTT--------TC----------------------------------------
T ss_pred CCCCCCCeeCCC-----CeeeCCCCccCCC--------CCc--CcCCCcCCCCCEECC---CCEEECCCCCcCCCCcCC-
Confidence 35765 688762 4556888988766 532 345667888877763 578999999999877632
Q ss_pred ccCCCCCCCCCCceee-CCCceecCcCCCCCCCCCCCCCCCCCCCC
Q psy8875 219 AEAGSKPCRNSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCHE 263 (734)
Q Consensus 219 ~~~~~~~C~~~~~~~C-~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~ 263 (734)
.|. -.| .+|+|+. .++|. |..|+.+..|+.
T Consensus 278 ------~C~----~~C~~~g~C~~-~~~C~----C~~G~~G~~C~~ 308 (324)
T 2ygq_A 278 ------VCE----PGCGAHGTCHE-PNKCQ----CQEGWHGRHCNK 308 (324)
T ss_dssp ----------------------------------------------
T ss_pred ------CCC----CCCCCCCEECC-CCEeE----CCCCCcCCCCCC
Confidence 232 124 4678875 56777 999999998864
No 217
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.28 E-value=5.8e-05 Score=82.22 Aligned_cols=184 Identities=7% Similarity=0.031 Sum_probs=127.7
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+..++.+.....+......+.+++|.+....|+++.... ..|+.+++.++.. ..+ .........+++.+.++.|
T Consensus 204 ~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l-~~~~~~~~~~~~spdg~~l 281 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV-TDGRSNNTEPTWFPDSQNL 281 (415)
T ss_dssp EEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC-CCCSSCEEEEEECTTSSEE
T ss_pred EEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC-cCCCCcccceEECCCCCEE
Confidence 67888887766666655555678999999888888876543 4599999875433 222 2233456678888777878
Q ss_pred EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++... ..+|++.++++...+.+. ........+++.|...+|+++.... ...|+..++++...+.+.. . .....
T Consensus 282 ~~~s~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~-~~~~~ 358 (415)
T 2hqs_A 282 AFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T-FLDET 358 (415)
T ss_dssp EEEECTTSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S-SSCEE
T ss_pred EEEECCCCCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C-CCcCC
Confidence 887653 348999998876654433 2334567899999888888886432 3589999998766544332 2 36788
Q ss_pred EEEecCCCeEEEEeCCCC--eEEEEecCCCceEEEE
Q psy8875 639 LTLDLVQRRLYWVDAKLN--EISSCDYNGGNRRLVL 672 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~i~ 672 (734)
+++.+.+..|+++....+ .|+.++++|...+.+.
T Consensus 359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred eEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 999888888888764433 7999999887766553
No 218
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=98.27 E-value=3.6e-07 Score=75.22 Aligned_cols=51 Identities=29% Similarity=0.748 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCc-cccccccCCCCCc-CccccCCCcceeecCCCcEecCCCCcc
Q psy8875 375 DCPLMQDEDPTKC-GVDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTC 427 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C 427 (734)
.|+.||...+..| +++||.. ...|. +.|+|++++|+|.|++||.+..+ ++|
T Consensus 29 ~C~~Gy~~~g~~C~dideC~~-~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~~C 81 (82)
T 1emn_A 29 ECPFGYILAGNECVDTDECSV-GNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC 81 (82)
T ss_dssp ECCTTEEEETTEEEECCGGGT-CCTTSSSCEEECSSSEEECCSSSSCCCSS-SCC
T ss_pred ECCCCeECCCCccCCcccccC-CCCCCCCEeECCCCCEEeECCCCeEeCCC-Ccc
Confidence 5666665333457 7899974 34564 58999999999999999998766 665
No 219
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=98.25 E-value=9.2e-05 Score=78.73 Aligned_cols=151 Identities=9% Similarity=0.146 Sum_probs=105.5
Q ss_pred ceEEEeee-c--c----CCeEEEEEeCCCcEEEEecCCCCceEEEE----eC--------C-----CCCccceeeecc--
Q psy8875 504 SATAIDFV-F--R----TGMIFWSDISEKKIYKAPIDEGSERTVVI----EE--------D-----KTIADGLAVDWI-- 557 (734)
Q Consensus 504 ~~~~i~~d-~--~----~~~lyw~d~~~~~I~~~~l~~g~~~~~~~----~~--------~-----~~~p~glAvD~~-- 557 (734)
....|++| . . .+.+|++|.....|..+++..+....++. .. + .....|||+.+.
T Consensus 153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~ 232 (381)
T 3q6k_A 153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDS 232 (381)
T ss_dssp GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcC
Confidence 45566666 2 2 57899999988889988888655444431 00 0 125668999887
Q ss_pred --CCcEEEEeCCCCeEEEEeC----CC---CceEEEEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-----
Q psy8875 558 --YSHIYWTDAHKNTIELANF----EG---TMRKVLVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG----- 622 (734)
Q Consensus 558 --~~~lY~td~~~~~I~~~~l----dG---~~~~~l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG----- 622 (734)
.+.|||.-....+++++.. +. ...+.+.... ..+..++++|+.+|.||+++.. ...|.+.+.++
T Consensus 233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~-~~aI~~w~~~~~~~~~ 311 (381)
T 3q6k_A 233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN-TKQVSCWNTQKMPLRM 311 (381)
T ss_dssp TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS-SSEEEEEETTSCSBCG
T ss_pred CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc-CCeEEEEeCCCCcccc
Confidence 7899999988888888863 11 2223333332 2455578999889999999975 47999998887
Q ss_pred CceEEEEE-cCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 623 SHRNMVIV-SDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 623 ~~~~~lv~-~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
.+..+++. ..+.||.+|+|| .++.||+......
T Consensus 312 ~n~~~l~~d~~l~~pd~~~i~-~~g~Lwv~sn~l~ 345 (381)
T 3q6k_A 312 KNTDVVYTSSRFVFGTDISVD-SKGGLWFMSNGFP 345 (381)
T ss_dssp GGEEEEEECTTCCSEEEEEEC-TTSCEEEEECSCC
T ss_pred CceEEEEECCCccccCeEEEC-CCCeEEEEECcch
Confidence 34455554 578999999998 5778999875543
No 220
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=98.23 E-value=3.1e-07 Score=84.28 Aligned_cols=41 Identities=37% Similarity=0.832 Sum_probs=36.0
Q ss_pred cccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccC
Q psy8875 392 CAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDE 432 (734)
Q Consensus 392 C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~e 432 (734)
|...+++|.+.|+++++ +|+|.|++||.|..++++|.++++
T Consensus 91 c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~e 132 (142)
T 2c4f_L 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132 (142)
T ss_dssp TTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESSS
T ss_pred ccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCCc
Confidence 34445788899999999 999999999999999999998876
No 221
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=98.23 E-value=6e-07 Score=67.10 Aligned_cols=42 Identities=40% Similarity=0.992 Sum_probs=36.4
Q ss_pred cccccccC--------CCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875 388 GVDECAKD--------NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429 (734)
Q Consensus 388 ~~~eC~~~--------~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~ 429 (734)
++|||... +..|.+.|+|++++|+|.|++||.|..++++|.+
T Consensus 3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 57788753 3679999999999999999999999989999864
No 222
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.20 E-value=8.8e-05 Score=86.45 Aligned_cols=229 Identities=10% Similarity=0.081 Sum_probs=134.5
Q ss_pred eeeeeeccceEEeecCC-----CceEEEecCCcc---------------eEEEeeeccCCeEEEEEe-------------
Q psy8875 476 SLLFARKHDIRKISLDH-----HEMTAIVNSTKS---------------ATAIDFVFRTGMIFWSDI------------- 522 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~-----~~~~~l~~~~~~---------------~~~i~~d~~~~~lyw~d~------------- 522 (734)
.|+++....|+..++.+ .....+...... +.+++|.+....|+++..
T Consensus 134 ~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 134 RVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred EEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 45556677788888776 554444332222 468889988888888752
Q ss_pred -------------------CCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcEEEEeCCC----CeEEEEeCCC
Q psy8875 523 -------------------SEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAHK----NTIELANFEG 578 (734)
Q Consensus 523 -------------------~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~~----~~I~~~~ldG 578 (734)
....|+.+++.++....+... .....+..+++.+.++.|+++.... ..|.+.++.+
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 234678888774432222111 1112345677777777788865432 3788888876
Q ss_pred C-ceEEEEcC-CC---CCceeEEEeC--CCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-ee-EEEecCCCeEE
Q psy8875 579 T-MRKVLVRS-YL---DEPRSLALNP--IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NG-LTLDLVQRRLY 649 (734)
Q Consensus 579 ~-~~~~l~~~-~l---~~P~~iavD~--~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~g-lavD~~~~~LY 649 (734)
. ..+.+... .. .....+++.| ...+||.+......+|+..+++|...+.+.. -.++ .. +++++.+++||
T Consensus 294 g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~ 371 (706)
T 2z3z_A 294 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLY 371 (706)
T ss_dssp CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEE
T ss_pred CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEE
Confidence 5 44444421 11 1236788987 5555555544344688988887765554422 2222 33 78998888999
Q ss_pred EEeCCCC----eEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCC---CceEEEeccCCC
Q psy8875 650 WVDAKLN----EISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQ---KAIYKANKFTGD 710 (734)
Q Consensus 650 w~D~~~~----~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~---~~v~~~~~~~G~ 710 (734)
++....+ .|+++++++...+.+.. ......+++. +.+|.++-... ..|+.++..+++
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGGKTKDLTP----ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCCCCEESCC----SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEecCCCCceEEEEEEEcCCCCceeccC----CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9876544 89999988766554432 1223455553 34454442221 346666655554
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.20 E-value=0.00028 Score=75.42 Aligned_cols=206 Identities=13% Similarity=0.089 Sum_probs=118.0
Q ss_pred eeeeee---ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC---CCc
Q psy8875 476 SLLFAR---KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK---TIA 549 (734)
Q Consensus 476 ~l~~~~---~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~---~~p 549 (734)
+||+++ ...|..|++........++... ..++ + +...+.|++....+++..+.+.............+ ..|
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~~~~-~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-CYHI-F-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 226 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEE-E-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-ccee-e-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence 455555 2467778877665543333211 1111 2 33344444555566666666653112111111111 122
Q ss_pred cc--eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC---------CCCCc---eeEEEeCCCCeEEEEecC-----
Q psy8875 550 DG--LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS---------YLDEP---RSLALNPIDGWMYWSDWG----- 610 (734)
Q Consensus 550 ~g--lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~---------~l~~P---~~iavD~~~g~LYwtd~~----- 610 (734)
.. .+++...+++||... .++|+++++.+...+++-.- ....| ..+++++..++||++...
T Consensus 227 ~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp BCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred ccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 22 355556777777655 58899999987765433111 11123 348999999999998631
Q ss_pred ---CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCC-eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875 611 ---QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR-RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 611 ---~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~-~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v 686 (734)
...+|+++++....+..-+... ..|.+|+|++.++ +||.+....+.|..++........-+ ....+|..|.+
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i---~~~~~p~~l~~ 381 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV---NQLGHGPQVIT 381 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE---CCCCSSCCEEE
T ss_pred cCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe---cCCCCCceeEE
Confidence 1257999888654432222111 3578999998876 79999998999999997543332222 34678887776
Q ss_pred ECC
Q psy8875 687 FED 689 (734)
Q Consensus 687 ~~~ 689 (734)
..+
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 543
No 224
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=98.13 E-value=3.4e-06 Score=88.58 Aligned_cols=60 Identities=27% Similarity=0.752 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCccccccccC-CCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 375 DCPLMQDEDPTKCGVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 375 ~C~~g~d~~~~~C~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
.|+.||.+..+.-+++||... +..|.+.|+|++++|+|.|++||.+..++++|.++++|.
T Consensus 29 ~C~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~c~ 89 (317)
T 3h5c_B 29 TCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89 (317)
T ss_dssp CCSSSCCSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECSSCC
T ss_pred ECCCCCcCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccccccc
Confidence 667777654322268899863 368999999999999999999999998999999998874
No 225
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.11 E-value=0.0001 Score=85.94 Aligned_cols=229 Identities=13% Similarity=0.120 Sum_probs=143.1
Q ss_pred ceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-----CCceEEEEeCCCC--
Q psy8875 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-----GSERTVVIEEDKT-- 547 (734)
Q Consensus 475 ~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-----g~~~~~~~~~~~~-- 547 (734)
..++++....|+..++.+.....+......+..++|.+..+.|+++ ..+.|+..++.+ +....+. .....
T Consensus 93 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~-~~~~~~~ 169 (706)
T 2z3z_A 93 GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAVT-IDGTETL 169 (706)
T ss_dssp TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEESC-SCCBTTE
T ss_pred CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEec-cCCCCCe
Confidence 4567777788888888877666665544456667888888888776 357888888875 4333222 11111
Q ss_pred ------------CccceeeeccCCcEEEEeC--------------------------------CCCeEEEEeCCCCceEE
Q psy8875 548 ------------IADGLAVDWIYSHIYWTDA--------------------------------HKNTIELANFEGTMRKV 583 (734)
Q Consensus 548 ------------~p~glAvD~~~~~lY~td~--------------------------------~~~~I~~~~ldG~~~~~ 583 (734)
.+.++++.+.++.|+++.. ....|.+.++++.....
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 1478888888888888751 23578888887765444
Q ss_pred EEcC--CCCCceeEEEeCCCCeEEEEecCC---CceEEEeccCCC-ceEEEEEc-CCC---CceeEEEec--CCCeEEEE
Q psy8875 584 LVRS--YLDEPRSLALNPIDGWMYWSDWGQ---NAKIERAGMDGS-HRNMVIVS-DIK---WPNGLTLDL--VQRRLYWV 651 (734)
Q Consensus 584 l~~~--~l~~P~~iavD~~~g~LYwtd~~~---~~~I~~~~ldG~-~~~~lv~~-~l~---~P~glavD~--~~~~LYw~ 651 (734)
+... ....+..+++.|...+|+++.... ...|+..++++. ..+.+... ... ....+++.+ .++.||.+
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence 3321 223467899999877888865321 247888888765 44444422 211 235688876 55555544
Q ss_pred eC-CCCeEEEEecCCCceEEEEcCCCCCCCCe-E-EEE--ECCEEEEEeCCCC----ceEEEeccCCC
Q psy8875 652 DA-KLNEISSCDYNGGNRRLVLYSPQTLSHPF-S-IST--FEDWLYWSDWQQK----AIYKANKFTGD 710 (734)
Q Consensus 652 D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~-g-l~v--~~~~lywtd~~~~----~v~~~~~~~G~ 710 (734)
+. +..+|+.++.+|...+.+... ..+. + +++ .+++||++....+ .|++++..+|+
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~----~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKG----EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCS----SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ccCCccEEEEEECCCCEEEecCCC----CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 32 345788888777666555321 2222 3 455 3567888876644 78888766654
No 226
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=98.10 E-value=0.0014 Score=70.35 Aligned_cols=211 Identities=9% Similarity=-0.026 Sum_probs=133.4
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC------ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS------ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~------~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
....+.+|+|.+..+.++.+-...+.|...++..+. .....+......+..|++.+.+.+++++-...+.|.+.
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 345678999998455566666677888888887552 11222333445677888887766777777777899999
Q ss_pred eCCCCceEEEE--cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE-EcCC-CCceeEEEecCCCeEEE
Q psy8875 575 NFEGTMRKVLV--RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI-VSDI-KWPNGLTLDLVQRRLYW 650 (734)
Q Consensus 575 ~ldG~~~~~l~--~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv-~~~l-~~P~glavD~~~~~LYw 650 (734)
++........+ .........|++.|...+|+.+. ..+.|...++........+ .... ..+..+++.+. ++++.
T Consensus 160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 236 (402)
T 2aq5_A 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILT 236 (402)
T ss_dssp ETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEE
T ss_pred ECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEE
Confidence 98766554444 44556778999998666666655 3467888777654333233 2222 23678888754 55555
Q ss_pred Ee---CCCCeEEEEecCCCce-EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCc-eEEE
Q psy8875 651 VD---AKLNEISSCDYNGGNR-RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDN-LTAI 715 (734)
Q Consensus 651 ~D---~~~~~I~~~~~dG~~~-~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~-~~~l 715 (734)
+- ...+.|...++..... ..+... ........+++. +..||++....+.|...+..+++. +..+
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred EeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 54 5667888888765432 222211 123345677774 567888877677787777777764 4444
No 227
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.09 E-value=8.5e-05 Score=79.31 Aligned_cols=224 Identities=12% Similarity=0.031 Sum_probs=126.3
Q ss_pred ceEEeecCCCceEEEecCCcceE-EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc-----------
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSAT-AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG----------- 551 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~-~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g----------- 551 (734)
.|+.+++.+.....+........ ++.|.+..+.|+++.. .+.|+.++++++..+.+........|.|
T Consensus 61 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 61 NYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp EEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred eEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 57777777766655543322222 2567777888877764 3468998888554333322111111221
Q ss_pred -------eeeeccCCcEEEEe----CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeC-CCCeEEEEecCCC----ceE
Q psy8875 552 -------LAVDWIYSHIYWTD----AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQN----AKI 615 (734)
Q Consensus 552 -------lAvD~~~~~lY~td----~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~~----~~I 615 (734)
+++.+..+.|+++. .....|++.++.+...+.+. ........+++.| ..++|+++..+.. .+|
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 11222233333332 33457888888766555554 2344567888888 4555766643322 579
Q ss_pred EEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEe--CCCCe--EEEEecCCCceEEEEcCCCCCCCCeEEEEE--C
Q psy8875 616 ERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVD--AKLNE--ISSCDYNGGNRRLVLYSPQTLSHPFSISTF--E 688 (734)
Q Consensus 616 ~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D--~~~~~--I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~ 688 (734)
+..++++...+.+.... ...+..+++.+.+.+|+++. ..... |+.+++.+...+.+...+. ..+++. .
T Consensus 219 ~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-----~~~~~s~~d 293 (396)
T 3c5m_A 219 WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-----CSHLMSNFD 293 (396)
T ss_dssp EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-----EEEEEECSS
T ss_pred EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-----CCCCccCCC
Confidence 99999887655443321 22356678888888787773 23334 9999988766655543211 114442 3
Q ss_pred CEEEEEe----------------CCCCceEEEeccCCCceEE
Q psy8875 689 DWLYWSD----------------WQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 689 ~~lywtd----------------~~~~~v~~~~~~~G~~~~~ 714 (734)
+.++++. .+...|+.++..+|+...+
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 4444432 1346788888776665433
No 228
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.09 E-value=0.00016 Score=84.69 Aligned_cols=222 Identities=9% Similarity=0.082 Sum_probs=136.6
Q ss_pred eeeeeeccceEEeecCCC---ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC-----
Q psy8875 476 SLLFARKHDIRKISLDHH---EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT----- 547 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~---~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~----- 547 (734)
.|+++....|+.+++.+. ....+......+..++|.+..++|+++. .+.|+..++.++... .+......
T Consensus 122 ~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~-~~~~~~~~~~~~g 198 (741)
T 2ecf_A 122 RLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQM-QLTADGSTTIGNG 198 (741)
T ss_dssp EEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEE-ECCCCCCSSEEES
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEE-EeccCCccceecc
Confidence 466666688888888877 5655555556788899999888888775 457998888754322 22211111
Q ss_pred -----------CccceeeeccCCcEEEEeCCC--------------------------------CeEEEEeCCC-CceEE
Q psy8875 548 -----------IADGLAVDWIYSHIYWTDAHK--------------------------------NTIELANFEG-TMRKV 583 (734)
Q Consensus 548 -----------~p~glAvD~~~~~lY~td~~~--------------------------------~~I~~~~ldG-~~~~~ 583 (734)
.+.++++.+.++.|+++.... ..|++.++++ .....
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 278 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW 278 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE
T ss_pred ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE
Confidence 147788888888888875322 1677778776 55444
Q ss_pred EEcC--CCCCceeEEEeCCCCeEEEEecC---CCceEEEeccCCCceEEEEEcCC-C---CceeEEEecCCCeEEEEeCC
Q psy8875 584 LVRS--YLDEPRSLALNPIDGWMYWSDWG---QNAKIERAGMDGSHRNMVIVSDI-K---WPNGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 584 l~~~--~l~~P~~iavD~~~g~LYwtd~~---~~~~I~~~~ldG~~~~~lv~~~l-~---~P~glavD~~~~~LYw~D~~ 654 (734)
+... ....+..+++ |...+|+++... ....|+..++++...+.++.... . ....+++.+.+. ++|+...
T Consensus 279 ~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~ 356 (741)
T 2ecf_A 279 IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSER 356 (741)
T ss_dssp ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECT
T ss_pred ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecC
Confidence 4322 2334578888 887888877531 23578888887665555543221 1 235788876655 5555433
Q ss_pred --CCeEEEEecCCCceEEEEcCCCCCCCCeEE-EE--ECCEEEEEeCCC----CceEEEec
Q psy8875 655 --LNEISSCDYNGGNRRLVLYSPQTLSHPFSI-ST--FEDWLYWSDWQQ----KAIYKANK 706 (734)
Q Consensus 655 --~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl-~v--~~~~lywtd~~~----~~v~~~~~ 706 (734)
..+|+.++++|. .+.+... -.....+ ++ .+++||++.... ..|++++.
T Consensus 357 ~g~~~l~~~~~~~~-~~~l~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 357 TGFQHLYRIDSKGK-AAALTHG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TSSCEEEEECSSSC-EEESCCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCccEEEEEcCCCC-eeeeeec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 347898888887 5444321 1122233 24 456787765543 34677653
No 229
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.08 E-value=0.00011 Score=85.01 Aligned_cols=197 Identities=8% Similarity=0.064 Sum_probs=121.3
Q ss_pred ccCCe-EEEEEeCCCcEEEEecC--C-CCceEEEEeC----CCCCccceeeeccCCcEEEEeCC---------CCeEEEE
Q psy8875 512 FRTGM-IFWSDISEKKIYKAPID--E-GSERTVVIEE----DKTIADGLAVDWIYSHIYWTDAH---------KNTIELA 574 (734)
Q Consensus 512 ~~~~~-lyw~d~~~~~I~~~~l~--~-g~~~~~~~~~----~~~~p~glAvD~~~~~lY~td~~---------~~~I~~~ 574 (734)
|..++ |+++......|+.++++ + +..+ .+... ....+.++++.+.++.|+++... ...|++.
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 56777 88887667789999886 3 4332 22221 12345678888888889887643 2579999
Q ss_pred eCCC------CceEEEEcCCCCCceeEEEeCCCCeEEEEecCC------CceEEEeccCC-C---ceEEEEEcCCCCcee
Q psy8875 575 NFEG------TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ------NAKIERAGMDG-S---HRNMVIVSDIKWPNG 638 (734)
Q Consensus 575 ~ldG------~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~------~~~I~~~~ldG-~---~~~~lv~~~l~~P~g 638 (734)
++++ ...+.+.........++++.|...+|+|+.+.. ...|+..++++ . ..+.+.......+..
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~ 246 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ 246 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence 9988 555444313334567789999888999887532 25799999984 2 333344333455778
Q ss_pred EEEecCCCeEEEEeCCCC--eEEEEecCCCceEEEEcCCCCCCC------CeEEEEE-CCEEEEEeC-CCCceEEEeccC
Q psy8875 639 LTLDLVQRRLYWVDAKLN--EISSCDYNGGNRRLVLYSPQTLSH------PFSISTF-EDWLYWSDW-QQKAIYKANKFT 708 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~i~~~~~~~~~------P~gl~v~-~~~lywtd~-~~~~v~~~~~~~ 708 (734)
+++.+.+. ||++....+ .|+++++++...+.+......... ...+++. +++|+++.. +...|++++..+
T Consensus 247 ~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 325 (662)
T 3azo_A 247 AEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES 325 (662)
T ss_dssp EEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred eEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence 88876666 666654434 899999876665555432222211 2345653 555655533 344566666544
Q ss_pred CC
Q psy8875 709 GD 710 (734)
Q Consensus 709 G~ 710 (734)
|+
T Consensus 326 ~~ 327 (662)
T 3azo_A 326 GE 327 (662)
T ss_dssp TE
T ss_pred Cc
Confidence 43
No 230
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.07 E-value=0.0042 Score=66.68 Aligned_cols=229 Identities=8% Similarity=0.041 Sum_probs=141.1
Q ss_pred ccceEEeecCCCceE-EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMT-AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~-~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
...|+..++...... .+......+..++|+ . .++++-...+.|+..++.........+......+.+|++.+. +.
T Consensus 155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 230 (401)
T 4aez_A 155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GL 230 (401)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SS
T ss_pred CCeEEEEECcCCeEEEEecCCCCceEEEEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC-CC
Confidence 445666666544433 333345567788885 3 455566677888888887434333344444556778888864 45
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGL 639 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~gl 639 (734)
++++-...+.|.+.++........+.........|++.|....|+.+..+ ..+.|...++........+. .-.....|
T Consensus 231 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL 309 (401)
T ss_dssp EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence 55555556889999998665555554556678999999988888887632 35788888876544433333 23457889
Q ss_pred EEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 640 TLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 640 avD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++.+.+..|+.+.. ..+.|...++.......+............|++. .+.++++-...+.|...+..+++.+...
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 99877777777643 5678888887765443332211223456677774 3445555555677877777777665443
No 231
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.07 E-value=0.00069 Score=72.13 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=120.1
Q ss_pred EeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE
Q psy8875 508 IDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV 585 (734)
Q Consensus 508 i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~ 585 (734)
.+|.+..++|+++....+ .|+.+++.++. ...+.........++++.+.++.|+++... ..|++.++.+...+.+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeee
Confidence 567777777777765333 58888888543 222322221222367888888899998863 68999999877666555
Q ss_pred cCCCCCc--eeEEEeCCCCeEEEEe--------------------cCCCceEEEeccCCCceEEEEEcCCCCceeEEEec
Q psy8875 586 RSYLDEP--RSLALNPIDGWMYWSD--------------------WGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDL 643 (734)
Q Consensus 586 ~~~l~~P--~~iavD~~~g~LYwtd--------------------~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~ 643 (734)
....... ...++++...+|+... .+....|++.++++...+.+... ......+++.+
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~sp 197 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQWLGHPIYRP 197 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEET
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-CccccccEECC
Confidence 3322211 1223455544444221 11236899999887666555543 33467889988
Q ss_pred -CCCeEEEEeCC-----CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC-CCC---ceEEEeccCCCc
Q psy8875 644 -VQRRLYWVDAK-----LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW-QQK---AIYKANKFTGDN 711 (734)
Q Consensus 644 -~~~~LYw~D~~-----~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~-~~~---~v~~~~~~~G~~ 711 (734)
.+++|+++... ...|+.++++|...+.+..... ......+++ .+.+|+++.. ... .|+.++..+|+.
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 198 YDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE-GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT-TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC-CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 77778776543 4589999999887776643210 011223445 3455655433 222 388888777764
Q ss_pred eE
Q psy8875 712 LT 713 (734)
Q Consensus 712 ~~ 713 (734)
..
T Consensus 277 ~~ 278 (388)
T 3pe7_A 277 RQ 278 (388)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.07 E-value=0.00058 Score=70.91 Aligned_cols=219 Identities=14% Similarity=0.174 Sum_probs=126.7
Q ss_pred eeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD 555 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD 555 (734)
.+++.... |++++.++................++. .+.||+. ...+.|++++.. |.... ...........+++|
T Consensus 72 ~l~v~t~~-l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~-t~~~~l~~~d~~-g~~~~-~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 72 TIYFGSDK-VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVT-SMDGHLYAINTD-GTEKW-RFKTKKAIYATPIVS 145 (330)
T ss_dssp EECCSSCE-EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEE-CTTSEEEEECTT-SCEEE-EEECSSCCCSCCEEC
T ss_pred cEEEecCc-EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEE-ecCCEEEEEcCC-CCEEE-EEcCCCceeeeeEEc
Confidence 45554445 777766544322111110011112222 6667655 346789998877 54322 222233345567777
Q ss_pred ccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC
Q psy8875 556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW 635 (734)
Q Consensus 556 ~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~ 635 (734)
..++||+... .+.|.+.+.+|.....+. ........+++|. .+.||++. ..|.+.+.+|...... ......
T Consensus 146 -~~g~l~vgt~-~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~d~-~g~l~v~t----~~l~~~d~~g~~~~~~-~~~~~~ 216 (330)
T 3hxj_A 146 -EDGTIYVGSN-DNYLYAINPDGTEKWRFK-TNDAITSAASIGK-DGTIYFGS----DKVYAINPDGTEKWNF-YAGYWT 216 (330)
T ss_dssp -TTSCEEEECT-TSEEEEECTTSCEEEEEE-CSSCCCSCCEECT-TCCEEEES----SSEEEECTTSCEEEEE-CCSSCC
T ss_pred -CCCEEEEEcC-CCEEEEECCCCCEeEEEe-cCCCceeeeEEcC-CCEEEEEe----CEEEEECCCCcEEEEE-ccCCcc
Confidence 4567777654 478999998865443333 2334566788875 57788876 5688887666543322 222344
Q ss_pred ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
..++++| .+++||++.. .+.|.+++.+|.....+.... ..+.++.+. ++.||++... +.|+++++ +|+.+..
T Consensus 217 ~~~~~~~-~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~v~t~~-ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 217 VTRPAIS-EDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK---RIESSPVIGNTDTIYFGSYD-GHLYAINP-DGTEKWN 289 (330)
T ss_dssp CSCCEEC-TTSCEEEEET-TTEEEEECTTSCEEEEEECSS---CCCSCCEECTTSCEEEECTT-CEEEEECT-TSCEEEE
T ss_pred eeceEEC-CCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC---CccccceEcCCCeEEEecCC-CCEEEECC-CCcEEEE
Confidence 6788887 4568888864 467888887776655443321 223345665 6788887653 57899986 6776555
Q ss_pred Ee
Q psy8875 715 IT 716 (734)
Q Consensus 715 l~ 716 (734)
..
T Consensus 290 ~~ 291 (330)
T 3hxj_A 290 FE 291 (330)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 233
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.06 E-value=0.0053 Score=63.20 Aligned_cols=230 Identities=7% Similarity=-0.032 Sum_probs=139.7
Q ss_pred eeeeeeccceEEeecCCCc----eEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCC
Q psy8875 476 SLLFARKHDIRKISLDHHE----MTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTI 548 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~----~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~ 548 (734)
+++......|+..++.... ...+. .....+..++|.+....|+.. ...+.|+..++..+... ...+......
T Consensus 65 ~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 143 (337)
T 1gxr_A 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTSSAPA 143 (337)
T ss_dssp EEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred EEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCCcceeeecccCCCc
Confidence 3444445556655654332 12221 334567889999866555544 45678888888754422 2223333445
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV 628 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l 628 (734)
+..+++.+.++.|+.. ...+.|.+.++........+......+..+++.|...+|+... ..+.|...++........
T Consensus 144 i~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 144 CYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG--LDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe--cCCcEEEEECCCCceEee
Confidence 6788888655555544 4468899999876655555545566788999998766666655 346788888765543333
Q ss_pred EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEecc
Q psy8875 629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~ 707 (734)
+ .....+..+++.+.+..|+.+. ..+.|...++.......+. .......+|++. .+.++++-...+.|...+..
T Consensus 221 ~-~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 221 H-DFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred e-cCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEc---CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 3 2334567889987776666654 4578888888876655443 223345677774 34444444445677777776
Q ss_pred CCCceEE
Q psy8875 708 TGDNLTA 714 (734)
Q Consensus 708 ~G~~~~~ 714 (734)
+++.+..
T Consensus 296 ~~~~~~~ 302 (337)
T 1gxr_A 296 YGASIFQ 302 (337)
T ss_dssp TCCEEEE
T ss_pred CCeEEEE
Confidence 6665543
No 234
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.05 E-value=9.6e-06 Score=92.79 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=63.2
Q ss_pred CcccCCCcccCCCCCcc---ccCCCCCccCCCcccccc---CCCCCCCCCC-ceee-CCCceecCcCCCCCCCCCC----
Q psy8875 186 HLCLPAPQINAHSPKIS---CACPEGLKLLPDLLMCAE---AGSKPCRNST-MFRC-TGGMCIPSTWVCDGQNDCP---- 253 (734)
Q Consensus 186 ~~C~~~~~~~~~~~~~~---C~C~~G~~~~~~~~~~~~---~~~~~C~~~~-~~~C-~~g~Ci~~~~~Cdg~~dC~---- 253 (734)
.+|.|.+.|.+..+.+. |.|++||.|..|+..... .....|.... .-.| ++|+|+. ..|. |.
T Consensus 440 ~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~--g~C~----C~~~~~ 513 (690)
T 3fcs_B 440 QAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC--GQCV----CHSSDF 513 (690)
T ss_dssp TCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS--SSEE----ECCCSS
T ss_pred CCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC--CeeE----eecCCC
Confidence 46777777775556676 999999999988654310 0012343111 1234 3467763 4555 88
Q ss_pred CCCCCCCCC---CCCCCC-ceecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875 254 DGVDEKKCH---ETCRSD-EFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ 300 (734)
Q Consensus 254 dg~de~~C~---~~C~~~-~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~ 300 (734)
.|+.+..|+ ..|... ...|.++ +|+. ..| .|..|+.+..|+
T Consensus 514 ~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~--g~C----~C~~Gy~G~~Ce 559 (690)
T 3fcs_B 514 GKITGKYCECDDFSCVRYKGEMCSGHGQCSC--GDC----LCDSDWTGYYCN 559 (690)
T ss_dssp CCCBSTTSCBCSSCCCBSSSSBGGGSEEEET--TEE----EECTTEESSSSC
T ss_pred CCeeCCCcCcccCcCcCCCCCCCCCCCEecC--Cee----ECcCCCcCCCCc
Confidence 888888885 456532 2357644 7776 566 778888777776
No 235
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.03 E-value=0.0067 Score=65.04 Aligned_cols=228 Identities=7% Similarity=0.011 Sum_probs=139.3
Q ss_pred eeeeeeccceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA 553 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA 553 (734)
++..+.+..|+..++.......+.. ....+.+|+|.+....|+. -...+.|...++..+..... +......+..|+
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~ 183 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSV-GLGNGLVDIYDVESQTKLRT-MAGHQARVGCLS 183 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEE-ECCCSSCEEEEE
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEE-ECCCCeEEEEECcCCeEEEE-ecCCCCceEEEE
Confidence 4444556677777777666554443 2456789999985555544 44677888888875443333 222333444555
Q ss_pred eeccCCcEEEEeCCCCeEEEEeCC-CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC
Q psy8875 554 VDWIYSHIYWTDAHKNTIELANFE-GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD 632 (734)
Q Consensus 554 vD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~ 632 (734)
++ ++++++-...+.|.+.++. +......+........++++.|...+|+... ..+.|...++........+...
T Consensus 184 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~ 258 (401)
T 4aez_A 184 WN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG--NDNVVQIWDARSSIPKFTKTNH 258 (401)
T ss_dssp EE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCSSEEEEECCC
T ss_pred EC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEccCCCCCccEEecCC
Confidence 53 4566666667899999987 3333334445566788999998655555554 2467777777654444344444
Q ss_pred CCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEe-CCCCceEEEecc
Q psy8875 633 IKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSD-WQQKAIYKANKF 707 (734)
Q Consensus 633 l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd-~~~~~v~~~~~~ 707 (734)
......|++.+.+..|+.+-. ..+.|...++........+.. .....+|++ .+..|+.+. ...+.|...+..
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 556788999887878888754 578899989875554443332 233556666 334444443 244566666555
Q ss_pred CCCceE
Q psy8875 708 TGDNLT 713 (734)
Q Consensus 708 ~G~~~~ 713 (734)
+++...
T Consensus 336 ~~~~~~ 341 (401)
T 4aez_A 336 SSGLTK 341 (401)
T ss_dssp TTEEEE
T ss_pred Ccccee
Confidence 554433
No 236
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=97.97 E-value=4.9e-06 Score=62.03 Aligned_cols=42 Identities=36% Similarity=0.938 Sum_probs=35.5
Q ss_pred ccccCcCC---------CCCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875 428 IDIDECET---------PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470 (734)
Q Consensus 428 ~~~~eC~~---------~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~ 470 (734)
.|||||.. ..+|+++|+|+.|+|.|.|++||.+..+.++ |.+
T Consensus 2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~-C~~ 52 (53)
T 1apq_A 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS-CQA 52 (53)
T ss_dssp CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSC-EEC
T ss_pred CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCc-cCC
Confidence 47899975 3679999999999999999999999887665 753
No 237
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.96 E-value=0.0009 Score=72.87 Aligned_cols=207 Identities=9% Similarity=0.062 Sum_probs=131.1
Q ss_pred EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--e----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeE
Q psy8875 498 IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--R----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTI 571 (734)
Q Consensus 498 l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I 571 (734)
+......+.+|+|++....++++-...+.|...++..+.. . ...+......+..|++.+..++++++....+.|
T Consensus 177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 3344556788999987664667777788898888875322 1 112222334577888887788899998888999
Q ss_pred EEEeCCCC---ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEEcCCCCceeEEEecCCCe
Q psy8875 572 ELANFEGT---MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 572 ~~~~ldG~---~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
.+.++... .....+......++.|++.|...+++++-. ..+.|...++.. ......+.........|++.+.+..
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTT
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCC
Confidence 99998754 222223344567899999998777777763 346777777764 2222233334456788999887778
Q ss_pred EEEEeCCCCeEEEEecCCCc------------eEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875 648 LYWVDAKLNEISSCDYNGGN------------RRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~------------~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~ 705 (734)
|+.+-...+.|...++.... ...+.........+..|++. +.+++++-...+.|...+
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 88887777788887766421 12222212233457778884 233666665556554443
No 238
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=97.96 E-value=0.00056 Score=80.05 Aligned_cols=208 Identities=6% Similarity=-0.013 Sum_probs=134.0
Q ss_pred cceEEEeeeccCCeEEEEEeCCC-----cEEEEecCCCCceEEEEeCCC-----------------------CCccceee
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEK-----KIYKAPIDEGSERTVVIEEDK-----------------------TIADGLAV 554 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~-----~I~~~~l~~g~~~~~~~~~~~-----------------------~~p~glAv 554 (734)
..+..++|.+...+|+++....+ .|+..++.++....++..... ..+..+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45788999988888888876344 789999885544333321111 12578899
Q ss_pred eccCCcEEEEeCCCCeEEEEeCCCC---ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875 555 DWIYSHIYWTDAHKNTIELANFEGT---MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 555 D~~~~~lY~td~~~~~I~~~~ldG~---~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
.+.++.|+++.. +.|++.++++. ..+.+. .....+..+++.|...+|+++. ...|+..++++.....+...
T Consensus 117 SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 117 SPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp CTTSSEEEEEET--TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTTTEEEECCCC
T ss_pred CCCCCEEEEEeC--CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe---CCcEEEEecCCCCEEEeccC
Confidence 988888888876 89999999876 444333 3335678999999888888876 24799999887654433322
Q ss_pred CCC----------------CceeEEEecCCCeEEEEeCCC--------------------------------CeEEEEec
Q psy8875 632 DIK----------------WPNGLTLDLVQRRLYWVDAKL--------------------------------NEISSCDY 663 (734)
Q Consensus 632 ~l~----------------~P~glavD~~~~~LYw~D~~~--------------------------------~~I~~~~~ 663 (734)
... .+.++++.+.+.+|+++.... ..|+.+++
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~ 270 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP 270 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence 111 147899998888898874321 16777787
Q ss_pred CC-CceEEEEcCCCCCCCCeEEEE-ECCEEEEEeC----CCCceEEEeccCCCceEEEe
Q psy8875 664 NG-GNRRLVLYSPQTLSHPFSIST-FEDWLYWSDW----QQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 664 dG-~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~----~~~~v~~~~~~~G~~~~~l~ 716 (734)
++ ...+.+............+++ ++.+|+++.. ....|+.++..+|+...++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 271 AEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp STTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred CCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 77 655544321011122233443 5667776643 24568888877777665554
No 239
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=97.95 E-value=5.2e-06 Score=65.32 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=39.3
Q ss_pred cccccCcCC-CCCcccceeccCC-ceEEecCCCeeeCCCCCcccccccc
Q psy8875 427 CIDIDECET-PGSCSQICLNEKG-GFKCECVAGYIKDPHHPTQCKAAEG 473 (734)
Q Consensus 427 C~~~~eC~~-~~~C~~~C~n~~g-~~~C~C~~gy~~~~~~~t~C~~~~~ 473 (734)
..|+|||.. ++.|+|+|+|+.| +|.|.|++||.+..++++ |.+++.
T Consensus 2 ~~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~t-C~d~de 49 (69)
T 1kli_L 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS-CTPTVE 49 (69)
T ss_dssp CSCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSC-EEECSS
T ss_pred CcccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCc-ccCccc
Confidence 357899964 5889999999999 899999999999988777 887554
No 240
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.93 E-value=6e-06 Score=92.33 Aligned_cols=76 Identities=25% Similarity=0.537 Sum_probs=55.4
Q ss_pred ceecCcCccCCCCCCCC-CCccccccc-CcccC----Cceecc-CCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccc
Q psy8875 66 MCIPSTWVCDGQNDCPD-GVDEKKCQK-RICGQ----EEFTCR-SSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQAS 138 (734)
Q Consensus 66 ~Ci~~~~~cdg~~dC~d-g~de~~C~~-~~C~~----~~~~C~-~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~ 138 (734)
+.|...... |...|++ ..|++.|.. ..|.+ .+|+|. + |+||+..|+|||..||.||+||.+|. ..
T Consensus 33 R~v~~p~q~-gG~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~--g~Ci~~~~~Cdg~~dC~d~sdE~~c~-----~~ 104 (537)
T 3ojy_B 33 AYLLQPSQF-HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQT--GRCVNRRLLCNGDNDCGDQSDEANCR-----RI 104 (537)
T ss_dssp CCEEECEET-TCCCCCSCSEEEEECCCCCCCCCCSCCSSEECTTT--CCEECGGGTTSSSCCSSSSCTTSSCS-----SC
T ss_pred eeecccccc-CCCcCccchhhhccCCCccccccCCCCCccCcCCC--CcEeeccccCCCCCCCCCccccccCC-----CC
Confidence 455444433 5566764 467778854 44532 689998 6 69999999999999999999999884 23
Q ss_pred cCcCCCCceEe
Q psy8875 139 EFRCGNNRCIP 149 (734)
Q Consensus 139 ~f~C~~g~Ci~ 149 (734)
++.|..++++|
T Consensus 105 ~~~C~~~~~~~ 115 (537)
T 3ojy_B 105 YKKCQHEMDQY 115 (537)
T ss_dssp SSCCSSCCBCC
T ss_pred CCccccCcCCC
Confidence 46787777776
No 241
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.92 E-value=0.0035 Score=73.12 Aligned_cols=228 Identities=7% Similarity=-0.017 Sum_probs=137.1
Q ss_pred ceEEeecCCCceEEEecC-------CcceEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccce
Q psy8875 484 DIRKISLDHHEMTAIVNS-------TKSATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGL 552 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~-------~~~~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~gl 552 (734)
.|+++.+.+...+.++.. .....+++|.+...+|.++....+ .|+.+++.+|......+. . ....++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~ 176 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCM 176 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceE
Confidence 456666655555544321 113567889988888877654333 799999986654433332 1 124567
Q ss_pred eeeccCCcEEEEeCCC---------------CeEEEEeCCCCce--EEEEcCC--CCCceeEEEeCCCCeEEEEecCC--
Q psy8875 553 AVDWIYSHIYWTDAHK---------------NTIELANFEGTMR--KVLVRSY--LDEPRSLALNPIDGWMYWSDWGQ-- 611 (734)
Q Consensus 553 AvD~~~~~lY~td~~~---------------~~I~~~~ldG~~~--~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~-- 611 (734)
+..+.++.||++.... .+|++.++.+... +.+.... .....++++.|..++|+++....
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 7776778888886532 3489888876542 2333322 22346899999888888876422
Q ss_pred -CceEEEeccCC------C--ceEEEEEcCCCCceeEEEecCCCeEEEEeCC---CCeEEEEecCCCc---eEEEEcCCC
Q psy8875 612 -NAKIERAGMDG------S--HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK---LNEISSCDYNGGN---RRLVLYSPQ 676 (734)
Q Consensus 612 -~~~I~~~~ldG------~--~~~~lv~~~l~~P~glavD~~~~~LYw~D~~---~~~I~~~~~dG~~---~~~i~~~~~ 676 (734)
...|+..++++ . ..+.+.. .... ....+++.+++||+.... ..+|+.+++++.. .+.++....
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWVKLID-NFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CccEEEEEECcccccccCCccceEEeeC-CCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 46899988874 2 2333332 2221 122466678899988543 4589999988764 255553211
Q ss_pred CCCCCeEEEEE-CCEEEEEeCCC--CceEEEeccCCCceEEEe
Q psy8875 677 TLSHPFSISTF-EDWLYWSDWQQ--KAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 677 ~~~~P~gl~v~-~~~lywtd~~~--~~v~~~~~~~G~~~~~l~ 716 (734)
.....++++. +++|+++-... .+|+.++..+|+.++.|.
T Consensus 335 -~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 335 -KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp -SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred -CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 1123457776 78888876543 357777765676555553
No 242
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.88 E-value=8.3e-06 Score=91.28 Aligned_cols=43 Identities=40% Similarity=0.927 Sum_probs=36.0
Q ss_pred CCCcCCCCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875 46 TVYWRSKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ 90 (734)
Q Consensus 46 ~~c~~~~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~ 90 (734)
..|.....|. .+|+|. +|+||+..|+|||..||.|||||.+|.
T Consensus 58 ~~c~~~~~c~--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~C~ 101 (554)
T 3ojy_A 58 TTCVRQAQCG--QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCE 101 (554)
T ss_dssp CCC--CCCCS--SSEECSSSCCEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred CCCcccCCCC--CcCccCCCCEEcccccccCCcccCCCccccccCC
Confidence 3453345565 799999 999999999999999999999999886
No 243
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.003 Score=69.00 Aligned_cols=198 Identities=8% Similarity=-0.022 Sum_probs=119.7
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecC--CCCceEEEEe-CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~--~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
.+.+|+|.+....|+.+-...+.|...++. .+.....+.. .....+..|++.+.+..|+.+.. .+.|.+.++....
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSIP 182 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCcc
Confidence 578899999888877777777888777776 5555444431 22345778999887777777765 6788888875433
Q ss_pred eEE----EEcCCCCCceeEEEeCC---CCeEEEEecCCCceEEEeccCCCc-eEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875 581 RKV----LVRSYLDEPRSLALNPI---DGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDIKWPNGLTLDLVQRRLYWVD 652 (734)
Q Consensus 581 ~~~----l~~~~l~~P~~iavD~~---~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l~~P~glavD~~~~~LYw~D 652 (734)
... .+......+..|++.|. ..+|+.+.. .+.|...++.... ...++......+..|++. .+..|+.+
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~- 258 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA- 258 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE-
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--CCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE-
Confidence 211 12233456789999987 445555543 3566666665333 333333344567888987 55555544
Q ss_pred CCCCeEEEEecCCCceEEEEcCC-----------------------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEec
Q psy8875 653 AKLNEISSCDYNGGNRRLVLYSP-----------------------QTLSHPFSISTF--EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 653 ~~~~~I~~~~~dG~~~~~i~~~~-----------------------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~ 706 (734)
...+.|...++........+... ..-....+|++. +.+||.+....+.|...+.
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 45678888887655433332210 001123355553 5677777755566666554
No 244
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=97.87 E-value=8e-06 Score=61.30 Aligned_cols=43 Identities=26% Similarity=0.649 Sum_probs=36.4
Q ss_pred cCcCC-CCCcccceeccCCceEEecCCCeeeCCCCCccccccccc
Q psy8875 431 DECET-PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGH 474 (734)
Q Consensus 431 ~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~ 474 (734)
|||+. ++.|+|+|+|++|+|+|.|++||.+..+.++ |++++..
T Consensus 2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~-C~didec 45 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA-CIPTGPY 45 (55)
T ss_dssp CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSC-EEESSSS
T ss_pred ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCe-eccCccc
Confidence 67864 4789999999999999999999999888776 8876543
No 245
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.85 E-value=8.7e-06 Score=91.03 Aligned_cols=61 Identities=30% Similarity=0.815 Sum_probs=44.9
Q ss_pred CCCCCCCC-CCcCCCCC-CCccc----ccCcCC-CCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCC
Q psy8875 117 DNPDCSDG-SDEKSCKN-RTCQA----SEFRCG-NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS 185 (734)
Q Consensus 117 g~~dC~dg-~de~~C~~-~~C~~----~~f~C~-~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~ 185 (734)
|...|... .|+..|.. ..|.. .+|+|. +|+||+..|+|||..||.|||||.+ |......|.
T Consensus 42 gG~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~--------c~~~~~~C~ 109 (537)
T 3ojy_B 42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN--------CRRIYKKCQ 109 (537)
T ss_dssp TCCCCCSCSEEEEECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTTSS--------CSSCSSCCS
T ss_pred CCCcCccchhhhccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCcccccc--------CCCCCCccc
Confidence 44555543 55556632 33322 789999 9999999999999999999999998 765555553
No 246
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.001 Score=71.27 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=137.0
Q ss_pred cceEEeecCCCce---EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CCceEEEEeCCCCCccceeeec
Q psy8875 483 HDIRKISLDHHEM---TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GSERTVVIEEDKTIADGLAVDW 556 (734)
Q Consensus 483 ~~I~~i~l~~~~~---~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~~~~~~~~~~~~~p~glAvD~ 556 (734)
..|+..++..... .........+.+++|.+....|+.. ...+.|+..++.. +......+......+..|++.+
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEE-ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEE-ccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence 3455555554331 1112334567899998866555544 4567788887774 1222233333345677888887
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCc------eEEEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTM------RKVLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~------~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~ 627 (734)
..++++++-...+.|.+.++.... ....+ .........|++.|..+.++++-. ..+.|...++.......
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-SSNFASIWDLKAKKEVI 202 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-SSSCEEEEETTTTEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-CCCCEEEEECCCCCcce
Confidence 656677777777899999887654 22211 223456789999987566666653 34678777776544433
Q ss_pred EEEcC------CCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCc-eEEEEcCCCCCCCCeEEEEE--CCEEEEEe
Q psy8875 628 VIVSD------IKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGN-RRLVLYSPQTLSHPFSISTF--EDWLYWSD 695 (734)
Q Consensus 628 lv~~~------l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~--~~~lywtd 695 (734)
.+... ......|++.+.+..++++-...+ .|...++.... ....+. ........+|++. ++.++++-
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEE
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEE
Confidence 33322 345688999877655555554444 78888876532 211111 0122345667773 45566665
Q ss_pred CCCCceEEEeccCCCceEEEe
Q psy8875 696 WQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 696 ~~~~~v~~~~~~~G~~~~~l~ 716 (734)
...+.|...+..+++.+..+.
T Consensus 282 ~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 282 GRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp ESSSEEEEECSSSCCEEEEEE
T ss_pred eCCCCEEEeeCCCCccceeec
Confidence 556777777777777666654
No 247
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.84 E-value=0.00089 Score=71.24 Aligned_cols=183 Identities=11% Similarity=-0.014 Sum_probs=104.9
Q ss_pred CCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCCcEEEEeCC-C----CeEEEEeCCCCceEEEEcCC-CCCceeEE
Q psy8875 524 EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYSHIYWTDAH-K----NTIELANFEGTMRKVLVRSY-LDEPRSLA 596 (734)
Q Consensus 524 ~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~~lY~td~~-~----~~I~~~~ldG~~~~~l~~~~-l~~P~~ia 596 (734)
...|+.+++.++.... +.. ....+..+++.+ .++.|+++... . .+|+++++++...+.+.... ...+..++
T Consensus 167 ~~~l~~~d~~~g~~~~-~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 167 TCRLIKVDIETGELEV-IHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEETTTCCEEE-EEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred cceEEEEECCCCcEEe-ecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 3467888877544333 322 233455677776 45667666433 2 47999999887655554321 22466789
Q ss_pred EeCCCCeEEEEec-CCCce--EEEeccCCCceEEEEEcCCCCceeEEEec-CCCeEEEEe---------------CCCCe
Q psy8875 597 LNPIDGWMYWSDW-GQNAK--IERAGMDGSHRNMVIVSDIKWPNGLTLDL-VQRRLYWVD---------------AKLNE 657 (734)
Q Consensus 597 vD~~~g~LYwtd~-~~~~~--I~~~~ldG~~~~~lv~~~l~~P~glavD~-~~~~LYw~D---------------~~~~~ 657 (734)
+.|...+|+++.. ..... |++.++++...+.+.... ... +++.+ .+..|+++. .....
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence 9988777777643 22234 999998766555444322 112 67766 455554432 13468
Q ss_pred EEEEecCCCceEEEEcCCCCCC--------CCeEEEE--ECCEEEEEeCC--CCceEEEeccCCCc
Q psy8875 658 ISSCDYNGGNRRLVLYSPQTLS--------HPFSIST--FEDWLYWSDWQ--QKAIYKANKFTGDN 711 (734)
Q Consensus 658 I~~~~~dG~~~~~i~~~~~~~~--------~P~gl~v--~~~~lywtd~~--~~~v~~~~~~~G~~ 711 (734)
|+.+++.+...+.+......+. ....+++ .+.+|+++... ...|++++..++..
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 9999988776655544221110 1222334 45678877643 34688887654443
No 248
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.83 E-value=0.028 Score=57.50 Aligned_cols=228 Identities=8% Similarity=-0.005 Sum_probs=129.4
Q ss_pred ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++........+ .....+.+++|.+..+.| .+-...+.|...++..+..... +......+..+++.+....
T Consensus 44 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL-VSASDDKTLKIWDVSSGKCLKT-LKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSSE
T ss_pred CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE-EEECCCCEEEEEECCCCcEEEE-EcCCCCCEEEEEEcCCCCE
Confidence 344555555444443333 344567889999865544 4545678888888875543333 3333445677888865554
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEEEcCCCCceeE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVIVSDIKWPNGL 639 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l~~P~gl 639 (734)
| ++-...+.|.+.++........+.........+++.|...+|+.... .+.|...++..... ..+..........+
T Consensus 122 l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 198 (312)
T 4ery_A 122 I-VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFV 198 (312)
T ss_dssp E-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCSSCCCEEEE
T ss_pred E-EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeEEeccCCCceEEE
Confidence 4 44455688999998755444444444456788999986666655543 45677777654332 22322223334668
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 640 avD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++++.+..|+.+. ..+.|...++........+.............+ .++.++++-...+.|+..+..+++.+..+
T Consensus 199 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 199 KFSPNGKYILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp EECTTSSEEEEEE-TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 8886666665544 457888888765544333332211111111122 34555555555566666666666555544
No 249
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.82 E-value=0.026 Score=58.51 Aligned_cols=206 Identities=14% Similarity=0.020 Sum_probs=127.6
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+.++++.+. +.+..+-...+.|+..++..+..... +......+..+++.+.++ ++++-...+.|.+.++.....
T Consensus 80 ~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~-~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 80 QLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKS-IDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp SSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEE-EECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSE
T ss_pred CCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEE-EeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCce
Confidence 446778888764 44555666778888888875543333 333445567888886554 445555678999999876655
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
...+.........+++.|...+|..... .+.|...++........+.........|++.+.+..| ++-...+.|...
T Consensus 157 ~~~~~~~~~~v~~~~~spdg~~lasg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~s~s~dg~i~iw 233 (321)
T 3ow8_A 157 EYSLDTRGKFILSIAYSPDGKYLASGAI--DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL-VTASDDGYIKIY 233 (321)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE-EEECTTSCEEEE
T ss_pred eEEecCCCceEEEEEECCCCCEEEEEcC--CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE-EEEcCCCeEEEE
Confidence 5555455566789999987666665542 4667777765443333333333446789998655555 454556788888
Q ss_pred ecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 662 DYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 662 ~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++........+.. .......|++. .+.++++-...+.|...+..+++.+..+
T Consensus 234 d~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 234 DVQHANLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp ETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ECCCcceeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 8776554444432 23345567773 3444455445566766676666655554
No 250
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.82 E-value=0.0063 Score=64.53 Aligned_cols=210 Identities=8% Similarity=-0.004 Sum_probs=135.2
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
....+.+|+|.+....++++-...+.|...++..+.....+.. .....+..|++.+..++++++-...+.|.+.++.+.
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS 151 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence 3456788999986635666666678898888885554433321 233456678887645566666666789999999986
Q ss_pred ceEEEEcCC--CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 580 MRKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 580 ~~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
....+.... ......+++.|...+|+... ..+.|...++.+.....+ .........|++.+.+..++++-...+.
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 228 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD--STGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDAT 228 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEE--TTSEEEEEETTSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEEC--CCCCEEEEECCCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence 666555332 24578999999777666665 347888888876544433 3344567889998776646666666778
Q ss_pred EEEEecCC----CceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 658 ISSCDYNG----GNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 658 I~~~~~dG----~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
|...++.. ......+. ......+|++. .+.++++-...+.|...+..+++....+.
T Consensus 229 i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred EEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 88888764 22222221 23445677774 34455555555778888877777655443
No 251
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0035 Score=66.96 Aligned_cols=219 Identities=5% Similarity=-0.119 Sum_probs=129.5
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC-------------
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI------------- 548 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~------------- 548 (734)
...|+..+..+.....+......+.+++|.+....|+.. ...+.|+..++..+..... +......
T Consensus 129 dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 129 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVMQH-FELKETGGSSINAENHSGDG 206 (425)
T ss_dssp TSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEEEE-ECCC---------------C
T ss_pred CCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEE-eeccccCccceeeccccCCc
Confidence 345666665555555554455678899998866666554 4567888888874433222 2211111
Q ss_pred --ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 549 --ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 549 --p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
+..+++.+ +..+++-...+.|.+.++........+.........|++.|...+|+.+.. .+.|...++......
T Consensus 207 ~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 207 SLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD--DGTLRIWHGGNGNSQ 282 (425)
T ss_dssp CCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--TSCEEEECSSSBSCS
T ss_pred ceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC--CCEEEEEECCCCccc
Confidence 55566653 345666666788999998765544444445566789999987666666552 466777776544333
Q ss_pred EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~ 705 (734)
..+.........|++.+.+ ++++-...+.|...++........+.. .......|++. .+.++++-...+.|...+
T Consensus 283 ~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 3333344456788887655 555555668899888865544443332 12345566663 344444444456666666
Q ss_pred ccCCC
Q psy8875 706 KFTGD 710 (734)
Q Consensus 706 ~~~G~ 710 (734)
..+++
T Consensus 359 ~~~~~ 363 (425)
T 1r5m_A 359 LKKLN 363 (425)
T ss_dssp CHHHH
T ss_pred CCCCc
Confidence 55554
No 252
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=97.81 E-value=1.2e-05 Score=67.30 Aligned_cols=41 Identities=22% Similarity=0.545 Sum_probs=30.5
Q ss_pred cccccccCCCCCcCccccCC--CcceeecCCCcEecCCCCccc-cccC
Q psy8875 388 GVDECAKDNGGCLHKCVDLP--VGYMCECNEGYKLSSNRHTCI-DIDE 432 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~~--~~~~C~C~~G~~l~~~~~~C~-~~~e 432 (734)
++++|..++..-...|++++ ++|+|.|++|| .|+.|+ ++||
T Consensus 47 ~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~----~G~~Ce~~ide 90 (91)
T 1tpg_A 47 PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF----AGKSCEIDTRA 90 (91)
T ss_dssp CEEECSSCCSCTTCEEEEESSSSCEEEECCTTC----BSSSCCBCSSC
T ss_pred cCCcccCCCCCCCCEeecCCCCCCeEeECCCCC----cCCcCCcCCCC
Confidence 36778765433335799987 99999999999 578886 6664
No 253
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.80 E-value=1.2e-05 Score=89.95 Aligned_cols=92 Identities=27% Similarity=0.698 Sum_probs=61.1
Q ss_pred CCCCCCceecCCCceecCcCccCCCCCCCCC-Cccccccc-CcccC-----Cceecc-CCCCeeeCCCCCCCCCCCCCCC
Q psy8875 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDG-VDEKKCQK-RICGQ-----EEFTCR-SSPGECVPLTWMCDDNPDCSDG 124 (734)
Q Consensus 53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg-~de~~C~~-~~C~~-----~~~~C~-~~~~~Ci~~~~~Cdg~~dC~dg 124 (734)
+|. ..+|+- +.|...... |...|+.. .|++.|.. ..|.. .+|+|. + |+|||..|+|||..||.||
T Consensus 22 ~C~-~~~~R~---R~v~~p~q~-gG~~C~~~l~d~~~C~~~~~c~~~~~c~~~f~C~~~--g~Ci~~~~~Cdg~~dC~d~ 94 (554)
T 3ojy_A 22 PCQ-DKKYRH---RSLLQPNKF-GGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKET--GRCLKRHLVCNGDQDCLDG 94 (554)
T ss_dssp TTT-CEEEEE---CCEEECBCS-SCCCCCSCSEEEEECCCCCCC--CCCCSSSEECSSS--CCEECGGGTTSSSCCSSSC
T ss_pred CCC-CccEee---Eeecccccc-CCCCCCCccccccCCCCCCCCcccCCCCCcCccCCC--CEEcccccccCCcccCCCc
Confidence 354 444443 556555544 44568765 67777854 34432 689998 5 6999999999999999999
Q ss_pred CCcCCCCCCCcccccCcCCCCceEeCccc
Q psy8875 125 SDEKSCKNRTCQASEFRCGNNRCIPNHWQ 153 (734)
Q Consensus 125 ~de~~C~~~~C~~~~f~C~~g~Ci~~~~~ 153 (734)
+||.+|.. .....+.|.....||..++
T Consensus 95 sDE~~C~~--~~~~~~~C~~~~~iPg~~l 121 (554)
T 3ojy_A 95 SDEDDCED--VRAIDEDCSQYEPIPGSQK 121 (554)
T ss_dssp TTSSSCCS--CCCCCTTTTTSCBCTTHHH
T ss_pred cccccCCC--CCCCccccccccccCcccc
Confidence 99999953 2223456765556665443
No 254
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.021 Score=59.36 Aligned_cols=219 Identities=8% Similarity=-0.089 Sum_probs=126.5
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC----CCcEEEEecCCCCc------------eEEEEeCC
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS----EKKIYKAPIDEGSE------------RTVVIEED 545 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~----~~~I~~~~l~~g~~------------~~~~~~~~ 545 (734)
+..|+..++..............+..++|.+....|+..... .+.|...++..+.. ..+.....
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 445777777665554444455678889999866666555432 15666665543321 11111111
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
...+..+++.+.+..|+.+. ..+.|.+.++.. ......+......+..+++.|...+|+.+. ..+.|...++....
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS--RDTNSFLVDVSTLQ 251 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCC
T ss_pred ccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec--CCceEEEEECCCCc
Confidence 22567788887666665554 468899999976 333334444556788999998766666654 24678887776544
Q ss_pred eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC-------------eEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCE
Q psy8875 625 RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN-------------EISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDW 690 (734)
Q Consensus 625 ~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~-------------~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~ 690 (734)
....+. .-.....+++.+.+..|+.+..... .|...++........+.. ......+|++. .+.
T Consensus 252 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 252 VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--HFGPLNTVAISPQGT 328 (369)
T ss_dssp EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSS
T ss_pred eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--ccCcEEEEEECCCCC
Confidence 433333 3345678899888888887765432 566666554443333332 23345567773 344
Q ss_pred EEEEeCCCCceEEEec
Q psy8875 691 LYWSDWQQKAIYKANK 706 (734)
Q Consensus 691 lywtd~~~~~v~~~~~ 706 (734)
++++-...+.|...+.
T Consensus 329 ~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 329 SYASGGEDGFIRLHHF 344 (369)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEcCCCeEEEEEC
Confidence 4444444455554443
No 255
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.78 E-value=4.1e-05 Score=87.58 Aligned_cols=149 Identities=21% Similarity=0.452 Sum_probs=88.1
Q ss_pred CCCCCCCCCCcCCCCCC----------Cccccc--CcCC-CCceEeCccccCCCCCCC----CCCCCCCCCcc-Cccccc
Q psy8875 117 DNPDCSDGSDEKSCKNR----------TCQASE--FRCG-NNRCIPNHWQCDGEFDCS----DKSDEDPEMCN-GVNHCA 178 (734)
Q Consensus 117 g~~dC~dg~de~~C~~~----------~C~~~~--f~C~-~g~Ci~~~~~Cdg~~dC~----dgsde~~~~C~-~~~~C~ 178 (734)
|...|..|+.+..|+.. .|.... -.|. +|+|+. |...|. .|+.+.. |+ ++++|.
T Consensus 458 G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~------g~C~C~~~~~~Gy~G~~--Ce~~~~~C~ 529 (690)
T 3fcs_B 458 GVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC------GQCVCHSSDFGKITGKY--CECDDFSCV 529 (690)
T ss_dssp TEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS------SSEEECCCSSCCCBSTT--SCBCSSCCC
T ss_pred CceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC------CeeEeecCCCCCeeCCC--cCcccCcCc
Confidence 55678888888888432 255422 2465 467874 455566 6776655 43 233342
Q ss_pred cCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCc--cccccCCCCCCCCCCceee-CCCceecCcCCCCCCCCC-CC
Q psy8875 179 AVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDL--LMCAEAGSKPCRNSTMFRC-TGGMCIPSTWVCDGQNDC-PD 254 (734)
Q Consensus 179 ~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~--~~~~~~~~~~C~~~~~~~C-~~g~Ci~~~~~Cdg~~dC-~d 254 (734)
.. -...|.+.+.|.. +.|.|++||.|..|+ .... .|.......| ++|+|+.. .|. | ..
T Consensus 530 ~~---~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~-----~C~~~~g~~C~~~G~C~~g--~C~----C~~~ 591 (690)
T 3fcs_B 530 RY---KGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTD-----TCMSSNGLLCSGRGKCECG--SCV----CIQP 591 (690)
T ss_dssp BS---SSSBGGGSEEEET----TEEEECTTEESSSSCEECCCT-----TTBCTTSSBTSSSCEEETT--EEE----CCST
T ss_pred CC---CCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCC-----cccCCCCCCCCCCCEEeCC--EEE----CCCC
Confidence 11 0136777777754 789999999999887 2112 3321112233 24566542 455 8 88
Q ss_pred CCCCCCCCC--CCCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCCCCCC
Q psy8875 255 GVDEKKCHE--TCRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQPVKC 304 (734)
Q Consensus 255 g~de~~C~~--~C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C 304 (734)
|+.+..|+. .|+ -.|.++ .|+. |..++.+..|....|
T Consensus 592 Gy~G~~Ce~C~~C~---~~C~~~g~Cv~----------C~~g~tG~~C~~~~C 631 (690)
T 3fcs_B 592 GSYGDTCEKCPTCP---DACTFKKECVE----------CKKFDRGALHDENTC 631 (690)
T ss_dssp TCBSTTSCBCTTSC---CTTTSCCGGGT----------TTTTCCSSSSSSSCS
T ss_pred CccCCCcCcCCCCC---CCCCCCCCccc----------CCCCCccCCCCcccc
Confidence 888888874 452 237665 7763 777777776664444
No 256
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.78 E-value=0.015 Score=65.22 Aligned_cols=222 Identities=13% Similarity=0.079 Sum_probs=137.8
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
+..|+..++++.....+......+.++++.+....|. +-...+.|...+.. +.....+ ......+.+|++.+.++.|
T Consensus 324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~v~~~~~~-~~~~~~~-~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA-SASDDKTVKLWNRN-GQLLQTL-TGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETT-CCEEEEE-ECCSSCEEEEEECTTSSCE
T ss_pred CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEE-EEeCCCEEEEEcCC-CCEEEEe-cCCCCCeEEEEECCCCCEE
Confidence 3456666676666655555556778899988655554 44456777777765 3333333 3334567889998766666
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav 641 (734)
..+. ..+.|.+.+.++.....+. .......+|++.|...+|.... ..+.|...++++.....+. ........|++
T Consensus 401 ~~~~-~d~~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--~d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~ 475 (577)
T 2ymu_A 401 ASAS-DDKTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDDQTIASAS--DDKTVKLWNRNGQLLQTLT-GHSSSVRGVAF 475 (577)
T ss_dssp EEEE-TTSEEEEECTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTSCEEEEEE-CCSSCEEEEEE
T ss_pred EEEe-CCCEEEEEeCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEc--CCCEEEEEECCCCEEEEEc-CCCCCEEEEEE
Confidence 5544 4578999998887666554 3445678899998766666554 2467777777776554443 33445678999
Q ss_pred ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.+.+..|..+ ...+.|...+.+|...+.+.. ......+|++. .+++.++-...+.|...+ .+|+.+..+.
T Consensus 476 spd~~~las~-~~d~~i~iw~~~~~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd-~~~~~~~~~~ 546 (577)
T 2ymu_A 476 SPDGQTIASA-SDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 546 (577)
T ss_dssp CTTSCEEEEE-ETTSEEEEEETTSCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEE
T ss_pred cCCCCEEEEE-eCCCEEEEEcCCCCEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEe-CCCCEEEEEc
Confidence 8766655544 345678888888876666542 22345667773 344444433445565555 4666655554
No 257
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.77 E-value=0.0059 Score=62.83 Aligned_cols=200 Identities=11% Similarity=0.022 Sum_probs=118.4
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce---EEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER---TVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~---~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l 576 (734)
....+.+++|.+....|+... .+.|...++..+... ..+. ......+..+++.+.++.|+.. ...+.|.+.++
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~ 126 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDL 126 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEEC
T ss_pred CCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEEEC
Confidence 344567888887666555543 778888887644321 1111 1233456788888765555554 44688999998
Q ss_pred CCCce--EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875 577 EGTMR--KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 577 dG~~~--~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~ 654 (734)
..... ...+.........+++.|...+|+.... .+.|...++........+.........|++.+.+..|+.+. .
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 203 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-L 203 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred CCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-c
Confidence 76652 2233344556789999987666776653 46787777765544434434445678899987666666554 5
Q ss_pred CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCC
Q psy8875 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 655 ~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.+.|...++........... ......+++. +..|+... ..+.|...+..+++
T Consensus 204 dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPD 257 (337)
T ss_dssp TSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSC
T ss_pred CCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCC
Confidence 67888888876554433321 2334556662 33344333 34556655554443
No 258
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.012 Score=64.31 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=131.7
Q ss_pred cceEEeecC--CCceEEEe---cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE----EEEeCCCCCcccee
Q psy8875 483 HDIRKISLD--HHEMTAIV---NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT----VVIEEDKTIADGLA 553 (734)
Q Consensus 483 ~~I~~i~l~--~~~~~~l~---~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~----~~~~~~~~~p~glA 553 (734)
..|+..++. .......+ .....+.+|+|.+....|+..+ ..+.|+.+++..+.... .+. .....+..|+
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~ 202 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-KFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVH 202 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEE
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-CCCcEEEEecCCcccccccceeee-cccCceEEEE
Confidence 455555555 33333332 2345678999998777777665 46788888876443321 111 1234567888
Q ss_pred eecc--CCcEEEEeCCCCeEEEEeCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 554 VDWI--YSHIYWTDAHKNTIELANFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 554 vD~~--~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
+.+. .+.++++-...+.|.+.++.... ...++......+..+++. ...+|+... ..+.|...++........+.
T Consensus 203 ~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~--~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 203 LIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG--GDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp EEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE--SSSEEEEEETTTCCEEEEEE
T ss_pred EcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe--CCCeEEEEECCCCcEeeeec
Confidence 8876 14444454456889998886443 334344455677899998 444555443 34677777775443322222
Q ss_pred c-------------------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEec--CCC-ceEEEEcCCCCCCCCe
Q psy8875 631 S-------------------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY--NGG-NRRLVLYSPQTLSHPF 682 (734)
Q Consensus 631 ~-------------------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~--dG~-~~~~i~~~~~~~~~P~ 682 (734)
. .-....+|++.+.+..||.+....+.|...++ ... ..+.+..-.. -..+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~ 358 (450)
T 2vdu_B 280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVI 358 (450)
T ss_dssp CHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEE
T ss_pred chhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-CCceE
Confidence 1 01234678888778888888766778888777 322 2222211111 15678
Q ss_pred EEEEECCEEEEEeCCCC---------ceEEEeccCCC
Q psy8875 683 SISTFEDWLYWSDWQQK---------AIYKANKFTGD 710 (734)
Q Consensus 683 gl~v~~~~lywtd~~~~---------~v~~~~~~~G~ 710 (734)
+|++..+.+|++-.... .|+.++..+|+
T Consensus 359 ~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 359 SLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp EEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred EEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 89998888888754321 67777665554
No 259
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=97.76 E-value=0.00054 Score=77.81 Aligned_cols=174 Identities=11% Similarity=0.039 Sum_probs=112.1
Q ss_pred cCCCceEEEecCC-cceEEEeeeccCCeEEEEEe--C--CCcEEEEec--CCCCceEEEEeCCCCCccceeeeccCCcEE
Q psy8875 490 LDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDI--S--EKKIYKAPI--DEGSERTVVIEEDKTIADGLAVDWIYSHIY 562 (734)
Q Consensus 490 l~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~--~--~~~I~~~~l--~~g~~~~~~~~~~~~~p~glAvD~~~~~lY 562 (734)
+++.....+.... ....+++|.+. ..||+++. . ...|+.+++ + +... .+. .......+++.+..+.++
T Consensus 51 ~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~-g~~~-~l~--~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 51 YDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP-GEEQ-RLE--AVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp EETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST-TCCE-ECT--TSCSBEEEEEEECSSCEE
T ss_pred EcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC-Cccc-ccc--CCCCceeeeeCCCCCeEE
Confidence 4555555554433 35677888876 78888876 2 236788887 5 3333 221 222344556666676666
Q ss_pred EEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 563 WTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 563 ~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
++....+.+.+.++++...+.+..... ..++++|...+|+++... ....|++.++++...+.+. ........++
T Consensus 126 ~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~ 201 (582)
T 3o4h_A 126 FTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSAS 201 (582)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEE
T ss_pred EEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccce
Confidence 665555555577887766655553322 788999988888876532 2257999998876666553 3334457899
Q ss_pred EecCCCeEEEEeCCC-CeEEEEecCCCceEEEEc
Q psy8875 641 LDLVQRRLYWVDAKL-NEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 641 vD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~i~~ 673 (734)
+.+.+.+||.++... ..|+.+++++...+ ++.
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~ 234 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE 234 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence 998888899655432 38999999988777 443
No 260
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.76 E-value=0.0048 Score=64.39 Aligned_cols=207 Identities=12% Similarity=0.014 Sum_probs=119.1
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC----CCcEEEEecCCCCceEEEEeCCCCCccceeeecc
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS----EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI 557 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~ 557 (734)
...|+.+++.+.....+ ..+..++|.+..++|+++... ...|+.++++++..+.+... . . +..+++.+.
T Consensus 42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEECTT
T ss_pred cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeECCC
Confidence 34577777777665554 456778899888888887643 23588888885443333222 2 2 667777777
Q ss_pred CCcEEEEeCC--------------------------CCeEEEEeCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecC
Q psy8875 558 YSHIYWTDAH--------------------------KNTIELANFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWG 610 (734)
Q Consensus 558 ~~~lY~td~~--------------------------~~~I~~~~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~ 610 (734)
++.|+++... ...|++.++.+... +.+.. . ....+++.|.. .+|.+...
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~ 190 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHR 190 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecc
Confidence 7778887521 35788899977665 44543 2 67788998865 55555432
Q ss_pred C-------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC-------CCeEEEEecCCCceEEEEcCCC
Q psy8875 611 Q-------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK-------LNEISSCDYNGGNRRLVLYSPQ 676 (734)
Q Consensus 611 ~-------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~-------~~~I~~~~~dG~~~~~i~~~~~ 676 (734)
. ...|+..+ .|. .+.+... .... .+.+.+++|+++... ...|+.++ .| ..+.+...
T Consensus 191 ~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~~-- 260 (347)
T 2gop_A 191 EIIPQYFKFWDIYIWE-DGK-EEKMFEK--VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK-EVMGILDE-- 260 (347)
T ss_dssp CSSCCSSCCEEEEEEE-TTE-EEEEEEE--ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS-CEEESSTT--
T ss_pred cccccccccccEEEeC-CCc-eEEeccC--ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CC-ceEecccc--
Confidence 1 34788887 443 3334332 2222 236667778777532 35788887 33 33333321
Q ss_pred CCCCC-eE-EEEECCEEEEEeC--CCCceEEEeccCCCceEE
Q psy8875 677 TLSHP-FS-ISTFEDWLYWSDW--QQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 677 ~~~~P-~g-l~v~~~~lywtd~--~~~~v~~~~~~~G~~~~~ 714 (734)
.... .. +.+. +.||++.. +...|+ ++ +|+...+
T Consensus 261 -~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 261 -VDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW--DGEIKPI 297 (347)
T ss_dssp -CCSEEEEEEEET-TEEEEEEEETTEEEEE-EE--SSSEEEE
T ss_pred -CCcccCCccEEc-CcEEEEEecCCcEEEE-Ec--CCceEEE
Confidence 1122 22 4444 44666533 233556 55 4554333
No 261
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.0017 Score=69.54 Aligned_cols=226 Identities=9% Similarity=0.006 Sum_probs=135.6
Q ss_pred ccceEEeecCC----C-ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC------ceEEE--EeCCCCC
Q psy8875 482 KHDIRKISLDH----H-EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS------ERTVV--IEEDKTI 548 (734)
Q Consensus 482 ~~~I~~i~l~~----~-~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~------~~~~~--~~~~~~~ 548 (734)
...|+..++.. . ....+......+..|+|.+..+.++++-...+.|+..++..+. ....+ .......
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 34566666554 2 2222333445678899988746666666677888888887544 11111 1112345
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC------CCCceeEEEeCCCCeEEEEecCCCc---eEEEec
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY------LDEPRSLALNPIDGWMYWSDWGQNA---KIERAG 619 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~------l~~P~~iavD~~~g~LYwtd~~~~~---~I~~~~ 619 (734)
+..|++.+..+.++++-...+.|.+.++........+... ...+..+++.|....++++-... + .|...+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~~~~i~~~d 246 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS-DNDPSILIWD 246 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC-SSSCCCCEEE
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC-CCCceEEEEe
Confidence 6788888776788888777889999999776554444333 46688999999765555554322 2 566666
Q ss_pred cCCC-ceEEEEE-cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-C-EEEEEe
Q psy8875 620 MDGS-HRNMVIV-SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-D-WLYWSD 695 (734)
Q Consensus 620 ldG~-~~~~lv~-~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~-~lywtd 695 (734)
+... .....+. ........|++.+..+.++++-...+.|...++........+.. ......+|++.. + .++++-
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--RGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--SSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--CCCceEEEEECCCCCCEEEEE
Confidence 6542 2211222 23345678888874555555655678898888765544333332 223455677743 3 566666
Q ss_pred CCCCceEEEeccCCC
Q psy8875 696 WQQKAIYKANKFTGD 710 (734)
Q Consensus 696 ~~~~~v~~~~~~~G~ 710 (734)
...+.|...+..+++
T Consensus 325 ~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 325 SFDNKIEVQTLQNLT 339 (416)
T ss_dssp CSSSEEEEEESCCCC
T ss_pred ecCCcEEEEEccCCC
Confidence 666777666655544
No 262
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.73 E-value=0.011 Score=62.14 Aligned_cols=197 Identities=8% Similarity=-0.064 Sum_probs=121.0
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+.+|+|.+... +..+-...+.|+..++..+..... +......+..+++.+....++.+-...+.|.+.++.....
T Consensus 127 ~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~-~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 204 (344)
T 4gqb_B 127 DDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSS-YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP 204 (344)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred CCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEE-EcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence 45678999988554 445555678888888875433322 3323455678888877778888877788999998865433
Q ss_pred -EEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 582 -KVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 582 -~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
..+. ......+..+++.|..+.++.+-. ..+.|...++........+.......+.|++.+.+.++..+-+..+.|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp EEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred eeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence 3322 223345788999998888877653 3467777776543332233344455678898876666666655667888
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEE
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~ 704 (734)
..++.......+ . .......+|++. +.+|+.+-...+.|+.-
T Consensus 284 vwd~~~~~~~~~-~--~H~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 284 VLDSSLSELFRS-Q--AHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp EECTTCCEEEEE-C--CCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EEECCCCcEEEE-c--CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 878765543322 1 223344667763 44566655444555443
No 263
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.72 E-value=0.014 Score=61.87 Aligned_cols=202 Identities=10% Similarity=0.006 Sum_probs=118.8
Q ss_pred cceEEEeee----ccCCeEEEEEeCCCcEEEEecCC------CCceE-----EEE------eCCCCCccceeeeccCCcE
Q psy8875 503 KSATAIDFV----FRTGMIFWSDISEKKIYKAPIDE------GSERT-----VVI------EEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 503 ~~~~~i~~d----~~~~~lyw~d~~~~~I~~~~l~~------g~~~~-----~~~------~~~~~~p~glAvD~~~~~l 561 (734)
..+.+++|. +....++++-...+.|+..++.. +.... .+. ......+..|++.+.+ +
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 199 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--L 199 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--E
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--e
Confidence 678899998 76666244545667777777664 22221 221 2234457788888655 6
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcC---C---CCCceeEEEeCCCCeEEEEecCCC---ceEEEeccCCCceEEEEEc-
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRS---Y---LDEPRSLALNPIDGWMYWSDWGQN---AKIERAGMDGSHRNMVIVS- 631 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~---~---l~~P~~iavD~~~g~LYwtd~~~~---~~I~~~~ldG~~~~~lv~~- 631 (734)
+++-...+.|.+.++........+.. . ...+..|+++|...+|+.... . +.|...++........+..
T Consensus 200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~--d~~~g~i~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD--SNSFGCITLYETEFGERIGSLSVP 277 (397)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE--ETTEEEEEEEETTTCCEEEEECBC
T ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec--CCCCceEEEEECCCCcccceeccC
Confidence 66666778999999875544444433 3 567889999987666665542 3 5777777754433333333
Q ss_pred ------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC----CC---------------CCC
Q psy8875 632 ------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP----QT---------------LSH 680 (734)
Q Consensus 632 ------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~----~~---------------~~~ 680 (734)
.-.....|++.+.+..|+.+ ...+.|...++........+... .. ...
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence 33456788998666665544 45678888887655443333300 11 233
Q ss_pred CeEEEEECC-----------EEEEEeCCCCceEEEeccCC
Q psy8875 681 PFSISTFED-----------WLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 681 P~gl~v~~~-----------~lywtd~~~~~v~~~~~~~G 709 (734)
..+|++..+ .++++-...+.|...+..+|
T Consensus 357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 457777544 45555555566666555444
No 264
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.70 E-value=0.0037 Score=67.92 Aligned_cols=205 Identities=8% Similarity=0.012 Sum_probs=131.0
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC---------CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCe
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---------SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNT 570 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g---------~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~ 570 (734)
.....+..|+|.+..+.++.+-...+.|+..++... ......+......+.+|++.+.+..++++-...+.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 344567788888765667777667788888777631 11222223334567888888776657777777899
Q ss_pred EEEEeCCCCc---e----EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC---ceEEEEEcCCCCceeEE
Q psy8875 571 IELANFEGTM---R----KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS---HRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 571 I~~~~ldG~~---~----~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~---~~~~lv~~~l~~P~gla 640 (734)
|.+.++.... . ...+......+..|++.|..+.++.+... .+.|...++... .....+...-..++.|+
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-CCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 9999987521 1 12222445568899999977888887643 467777777543 12222334445678999
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCC-c-eEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccC
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGG-N-RRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~-~-~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~ 708 (734)
+.+.+..++++-...+.|...++... . ...+.. ......+|++. +..++++-...+.|...+...
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 98877778888777788999988752 2 333321 23345567773 446777776666776666544
No 265
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.67 E-value=0.0095 Score=61.50 Aligned_cols=208 Identities=13% Similarity=0.136 Sum_probs=121.7
Q ss_pred eeeeee-ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee
Q psy8875 476 SLLFAR-KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV 554 (734)
Q Consensus 476 ~l~~~~-~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv 554 (734)
.+++.. ...|++++..+..............++.++. .+.||+. ...+.|++++.. |...... .........+++
T Consensus 109 ~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~-~g~l~vg-t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~ 184 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSE-DGTIYVG-SNDNYLYAINPD-GTEKWRF-KTNDAITSAASI 184 (330)
T ss_dssp EEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT-TSCEEEE-CTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEE
T ss_pred EEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcC-CCEEEEE-cCCCEEEEECCC-CCEeEEE-ecCCCceeeeEE
Confidence 344443 4567777776433222222222222334442 5566664 345789998887 5433222 223345667788
Q ss_pred eccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCC
Q psy8875 555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIK 634 (734)
Q Consensus 555 D~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~ 634 (734)
| ..++||++. +.|.+.+.+|....... .....+.++++|+ .|.||++.. .+.|.+.+.+|.....+ .....
T Consensus 185 d-~~g~l~v~t---~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~v~t~--~~gl~~~~~~g~~~~~~-~~~~~ 255 (330)
T 3hxj_A 185 G-KDGTIYFGS---DKVYAINPDGTEKWNFY-AGYWTVTRPAISE-DGTIYVTSL--DGHLYAINPDGTEKWRF-KTGKR 255 (330)
T ss_dssp C-TTCCEEEES---SSEEEECTTSCEEEEEC-CSSCCCSCCEECT-TSCEEEEET--TTEEEEECTTSCEEEEE-ECSSC
T ss_pred c-CCCEEEEEe---CEEEEECCCCcEEEEEc-cCCcceeceEECC-CCeEEEEcC--CCeEEEECCCCCEeEEe-eCCCC
Confidence 7 567888887 77888886665443332 2335578899986 578988874 36788887777654333 22233
Q ss_pred CceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceE
Q psy8875 635 WPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIY 702 (734)
Q Consensus 635 ~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~ 702 (734)
.+..+++| .+++||++.. .+.|.+++.+|.....+... .....++.+ .+++||+.... +.|.
T Consensus 256 ~~~~~~~~-~~g~l~v~t~-~ggl~~~d~~g~~~~~~~~~---~~~~~~~~~d~~g~l~~gt~~-G~~~ 318 (330)
T 3hxj_A 256 IESSPVIG-NTDTIYFGSY-DGHLYAINPDGTEKWNFETG---SWIIATPVIDENGTIYFGTRN-GKFY 318 (330)
T ss_dssp CCSCCEEC-TTSCEEEECT-TCEEEEECTTSCEEEEEECS---SCCCSCCEECTTCCEEEECTT-SCEE
T ss_pred ccccceEc-CCCeEEEecC-CCCEEEECCCCcEEEEEEcC---CccccceEEcCCCEEEEEcCC-CeEE
Confidence 35567776 5778887764 46899998876654443321 223345566 56778876643 4443
No 266
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.66 E-value=0.036 Score=62.14 Aligned_cols=222 Identities=12% Similarity=0.051 Sum_probs=134.2
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
...|+..+.++.....+......+.++++.+....| .+-...+.|...++.+ .... .+......+.++++.+.+..|
T Consensus 283 d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~~~d~~i~~w~~~~-~~~~-~~~~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG-QHLQ-TLTGHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTS-CEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCC-CeeE-EEeCCCCCEEEEEECCCCCEE
Confidence 345555566655444444445677889998755544 4445667787777763 3222 223334456788888765555
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav 641 (734)
... ...+.|.+.+.++.....+. .....+++|++.|...+|..... .+.|...++++.....+. ..-....+|++
T Consensus 360 ~~~-~~dg~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~--d~~v~~~~~~~~~~~~~~-~~~~~v~~~~~ 434 (577)
T 2ymu_A 360 ASA-SDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD--DKTVKLWNRNGQLLQTLT-GHSSSVWGVAF 434 (577)
T ss_dssp EEE-ETTSEEEEEETTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEET--TSEEEEECTTCCEEEEEE-CCSSCEEEEEE
T ss_pred EEE-eCCCEEEEEcCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEeC--CCEEEEEeCCCCEEEEec-CCCCCeEEEEE
Confidence 544 44678988898887666554 44557889999987666665542 467777777776544433 33344578899
Q ss_pred ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.+.+.+|..+. ..+.|...++++...+.+.. ......+|++. .+.+..+-...+.|...+ .+|+.+..+.
T Consensus 435 s~d~~~l~~~~-~d~~v~~w~~~~~~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~ 505 (577)
T 2ymu_A 435 SPDDQTIASAS-DDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 505 (577)
T ss_dssp CTTSSEEEEEE-TTSEEEEEETTSCEEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEE
T ss_pred CCCCCEEEEEc-CCCEEEEEECCCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEe
Confidence 86666665543 45678888888776665542 22334566763 344444443445555544 3555544443
No 267
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.65 E-value=0.0017 Score=76.11 Aligned_cols=224 Identities=9% Similarity=0.063 Sum_probs=122.1
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-----------------
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----------------- 545 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----------------- 545 (734)
..++..++.+.....+.........++|.|..++|.++. .+.|+..++.++....+.....
T Consensus 92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 345566777666555544445677888988888887763 4678888777544332211111
Q ss_pred CCCccceeeeccCCcEEEEeCCC-----------------------------------CeEEEEeCCC---C---ceEEE
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHK-----------------------------------NTIELANFEG---T---MRKVL 584 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~-----------------------------------~~I~~~~ldG---~---~~~~l 584 (734)
+....+++.-+.++.|.++.... .+|.+.++++ . ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 11223466666666666552110 1456666665 3 22222
Q ss_pred Ec-----CCCCCceeEEEeCCCCeE-EEEecCC-CceEEEeccCCCc-------eEEEE-EcCCCC-----ceeEEEecC
Q psy8875 585 VR-----SYLDEPRSLALNPIDGWM-YWSDWGQ-NAKIERAGMDGSH-------RNMVI-VSDIKW-----PNGLTLDLV 644 (734)
Q Consensus 585 ~~-----~~l~~P~~iavD~~~g~L-Ywtd~~~-~~~I~~~~ldG~~-------~~~lv-~~~l~~-----P~glavD~~ 644 (734)
.. ........++..|....+ +++.... ...|+..++++.. ...++ ...-.+ +..+++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 21 011223455666654423 3444322 2467777776544 12222 222112 346778777
Q ss_pred CCeEE-EEe--CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC------CCceEEEeccCCC
Q psy8875 645 QRRLY-WVD--AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ------QKAIYKANKFTGD 710 (734)
Q Consensus 645 ~~~LY-w~D--~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~------~~~v~~~~~~~G~ 710 (734)
+..|+ |+- .+...|+.++++|+..+.|.........+ +.+++++||++... ...|++++..+++
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~--~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI--EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEE--EEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEE--EEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence 77776 663 34568999999998877665432111112 23458899998765 3578888764443
No 268
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=97.65 E-value=0.0027 Score=72.01 Aligned_cols=195 Identities=12% Similarity=-0.007 Sum_probs=117.4
Q ss_pred ceEEeec--CCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 484 DIRKISL--DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l--~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
.|+.+.+ ++... .+ ........++|.+..+.++++....+.+...+++++..+. +..... ..+++++.++.|
T Consensus 91 ~l~~~~~~~~g~~~-~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~---~~~~~spDG~~l 164 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG---FGFVSDIRGDLI 164 (582)
T ss_dssp EEEEEETTSTTCCE-EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS---CEEEEEEETTEE
T ss_pred EEEEEeccCCCccc-cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC---ceEEECCCCCEE
Confidence 4666777 55544 22 2222333456666676776666555555566777543333 332111 678898888888
Q ss_pred EEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 562 YWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 562 Y~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+++... ...|++.++++...+.|. ........+++.|...+|+.++......|++.++++...+ ++......+.+
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred EEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 876543 256999998776666554 3344568999999888888655433348999999887766 44333333445
Q ss_pred EE--------EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEE
Q psy8875 639 LT--------LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS 694 (734)
Q Consensus 639 la--------vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt 694 (734)
++ +++.+ +||++-...+.+....+ |+..+ .. .....++++.++.++++
T Consensus 243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~~~~-~~-----~~~v~~~~~sdg~~l~~ 298 (582)
T 3o4h_A 243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GERVE-AP-----QGNHGRVVLWRGKLVTS 298 (582)
T ss_dssp HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TEEEC-CC-----SSEEEEEEEETTEEEEE
T ss_pred hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CCeec-cC-----CCceEEEEecCCEEEEE
Confidence 55 87666 77777655566666666 43222 11 12234555556666554
No 269
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.64 E-value=0.035 Score=57.93 Aligned_cols=219 Identities=12% Similarity=0.062 Sum_probs=125.1
Q ss_pred ccceEEeecCCCc---eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCCCCccceeeecc
Q psy8875 482 KHDIRKISLDHHE---MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDWI 557 (734)
Q Consensus 482 ~~~I~~i~l~~~~---~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~~ 557 (734)
...|+..++.... ...+......+.+|+|.+....|+ +-...+.|+..++..+.....+ +......+..+++.+.
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEE-EEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 4556666666553 233333455778999998655554 4446677888777644322222 2223345678888866
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCc----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC------------
Q psy8875 558 YSHIYWTDAHKNTIELANFEGTM----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD------------ 621 (734)
Q Consensus 558 ~~~lY~td~~~~~I~~~~ldG~~----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld------------ 621 (734)
++.|+.+. ..+.|.+.+++... ...+.......+..|++.|...+|+.... .+.|...++.
T Consensus 108 ~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 108 EKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp SSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSCEEEEECCCTTTSCCCCCBT
T ss_pred CCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC--CCCEEEEEcccccccccccccc
Confidence 55555554 45778887776544 22232334567889999986665655543 3555555532
Q ss_pred ------CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEE
Q psy8875 622 ------GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWS 694 (734)
Q Consensus 622 ------G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywt 694 (734)
.......+.........|++.+.+..|+.+. ..+.|...++........+.. ......+|++. .+.++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEE
T ss_pred cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEE
Confidence 1111112222334567899987666666554 567888888865444333332 12234677774 5555555
Q ss_pred eCCCCceEEEeccC
Q psy8875 695 DWQQKAIYKANKFT 708 (734)
Q Consensus 695 d~~~~~v~~~~~~~ 708 (734)
- ..+.|...+..+
T Consensus 262 ~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 262 G-HDCFPVLFTYDS 274 (372)
T ss_dssp E-TTSSCEEEEEET
T ss_pred E-eCCeEEEEEccC
Confidence 5 556666665544
No 270
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.63 E-value=0.036 Score=57.46 Aligned_cols=214 Identities=9% Similarity=0.048 Sum_probs=124.1
Q ss_pred ccceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++..... ..+......+..++|.+....| .+-...+.|...++..+.. ...+......+..+++.+.++.
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL-ATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEE-EEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEE-EEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCE
Confidence 34566666654333 3333334456678888755544 4555677888888875443 3333334445678888866555
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
|. +-...+.|.+.++........+.........|++.|...+|+... ..+.|...++........+.........|+
T Consensus 179 la-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 179 LA-SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp EE-EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EE-EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 54 444568899999876544444444455678999998655555443 346677777765444434444455567899
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEE
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYK 703 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~ 703 (734)
+.+.+..|+ +-...+.|...++........+. .......+|++. ++.++++-...+.|..
T Consensus 256 ~sp~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 256 FCPDDTHFV-SSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp ECTTSSEEE-EEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ECCCCCEEE-EEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 986665555 44455778888876544333332 122344567773 2333344333344443
No 271
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.63 E-value=0.01 Score=63.43 Aligned_cols=203 Identities=6% Similarity=-0.041 Sum_probs=124.8
Q ss_pred cceEEeecCCC--------ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCcccee
Q psy8875 483 HDIRKISLDHH--------EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLA 553 (734)
Q Consensus 483 ~~I~~i~l~~~--------~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glA 553 (734)
..|+..++... ....+......+..|+|.+....++++-...+.|+..++..+.....+. ......+..|+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence 44555555443 2333444556788999998765677777778889998888543332221 22344567888
Q ss_pred eeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCC-CCCceeEEEeCCCCeEEEEec--CCCceEEEeccCCCce--EE
Q psy8875 554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSY-LDEPRSLALNPIDGWMYWSDW--GQNAKIERAGMDGSHR--NM 627 (734)
Q Consensus 554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~-l~~P~~iavD~~~g~LYwtd~--~~~~~I~~~~ldG~~~--~~ 627 (734)
+.+.+..|+.+ ...+.|.+.++........+ ... ...+..+++.|. +.++.+.. ...+.|...++..... ..
T Consensus 184 ~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 184 WSRDGALICTS-CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp ECTTSSCEEEE-ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred ECCCCCEEEEE-ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceE
Confidence 88755555544 45689999998755443333 222 234788999875 55554431 2346777777765332 22
Q ss_pred EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc--eEEEEcCCCCCCCCeEEEEEC
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN--RRLVLYSPQTLSHPFSISTFE 688 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~--~~~i~~~~~~~~~P~gl~v~~ 688 (734)
...........+++++.+..||++-...+.|...++.... ...+... .......+|++..
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-~~~~~v~~~~~sp 323 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-SSKESQRGMGYMP 323 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-CCSSCCSEEEECC
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-ccCCcccceEEec
Confidence 2223345578899998899999888777888888877655 3333321 1224456777744
No 272
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.039 Score=57.25 Aligned_cols=209 Identities=9% Similarity=-0.002 Sum_probs=120.8
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+.+|+|.+....|+ +-...+.|+..++..+..... +......+..|++.+.+..|+ +-...+.|.+.++....
T Consensus 31 h~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLF-SCSKDSSASVWYSLNGERLGT-LDGHTGTIWSIDVDCFTKYCV-TGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp CSSCEEEEEECTTSCEEE-EEESSSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEE-EEETTTEEEEEETTTCC
T ss_pred eeceEEEEEEcCCCCEEE-EEeCCCEEEEEeCCCchhhhh-hhhcCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCc
Confidence 345678889987555444 444677888888875543333 333345567888886554454 44557899999987655
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecC---CCceEEEeccCCCc--eEE----------EE-EcCCCCceeEEEecC
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWG---QNAKIERAGMDGSH--RNM----------VI-VSDIKWPNGLTLDLV 644 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~---~~~~I~~~~ldG~~--~~~----------lv-~~~l~~P~glavD~~ 644 (734)
....+. ....+..+++.|...+|+.+... ..+.|...++.... ... +. .........+++++.
T Consensus 108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 108 CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 444443 45578899999977777666532 11455555443221 111 11 111125678888876
Q ss_pred CCeEEEEeCCCCeEEEEecCC-CceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 645 QRRLYWVDAKLNEISSCDYNG-GNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 645 ~~~LYw~D~~~~~I~~~~~dG-~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+..|+.+. ..+.|...++.. ......+.. ......+|++. .+.++++-...+.|...+..+++.+..+.
T Consensus 187 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 187 GKYIIAGH-KDGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp GCEEEEEE-TTSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEc-CCCEEEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 66666655 457888888875 333322321 22344566663 33334444444667777766666555543
No 273
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.62 E-value=0.078 Score=55.20 Aligned_cols=228 Identities=8% Similarity=-0.046 Sum_probs=126.9
Q ss_pred cceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc---eEEEEeCCCCCccceeeeccC
Q psy8875 483 HDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE---RTVVIEEDKTIADGLAVDWIY 558 (734)
Q Consensus 483 ~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~---~~~~~~~~~~~p~glAvD~~~ 558 (734)
..|+..++..... ..+......+..++|.+....|. +-...+.|...++..+.. ....+......+..+++.+ .
T Consensus 77 g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~ 154 (340)
T 1got_B 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA-CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D 154 (340)
T ss_dssp TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEE-EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T
T ss_pred CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEE-EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-C
Confidence 4455555543332 23333445577889988655444 444567777777764322 1111222223344455542 2
Q ss_pred CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875 559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNG 638 (734)
Q Consensus 559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g 638 (734)
+. +++-...+.|.+.++........+.........+++.|... ++.+-. ..+.|...++........+.......++
T Consensus 155 ~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~-~d~~v~~wd~~~~~~~~~~~~h~~~v~~ 231 (340)
T 1got_B 155 NQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA-CDASAKLWDVREGMCRQTFTGHESDINA 231 (340)
T ss_dssp TE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE-TTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred Cc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEe-CCCcEEEEECCCCeeEEEEcCCcCCEEE
Confidence 33 44555578899998876555444545556788999998544 444432 2456766666544433333334455688
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 639 LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
|++.+.+..| .+-...+.|...++........+...........|++. .+.++.+-...+.|...+..+++.+..+.
T Consensus 232 v~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 232 ICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp EEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCCEE-EEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence 9998655554 45455678888887655443333221112233556663 45555555555677777766666665554
No 274
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.61 E-value=0.058 Score=55.07 Aligned_cols=207 Identities=9% Similarity=-0.011 Sum_probs=119.9
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+.+|+|.+....| .+-...+.|...++..+..... +......+..|++.+.++ ++++-...+.|.+.++.....
T Consensus 23 ~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp SSCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcccchh-hccCCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcE
Confidence 3467788898755544 4445667788777765443333 333344567888886554 444545568899999876554
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC 661 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~ 661 (734)
...+.........+++.|...+|+.... .+.|...++........+.........|++.+.+..|+.+ ...+.|...
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w 176 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW 176 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEE
Confidence 4444455566788999987666666553 4667777775443333333333445778887655555544 455778888
Q ss_pred ecCCCce-EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 662 DYNGGNR-RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 662 ~~dG~~~-~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
++..... ..+... .......+++. .+.++++-...+.|...+..+++.+..+.
T Consensus 177 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 177 DTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp ETTTCCEEEEECCS--SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCceeeEEecc--CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 8764433 333221 11122345552 23333443444667666666666555443
No 275
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.028 Score=58.79 Aligned_cols=211 Identities=8% Similarity=0.030 Sum_probs=116.4
Q ss_pred CCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ld 577 (734)
....+.+|+|.+. .+.++++-...+.|+..++..+.. ....+......+..|++.+.. +.++++-...+.|.+.++.
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 3456788888754 245555555678888888775432 222222234557788888662 4455555557889999886
Q ss_pred CC--ceEEEEcCCCCCceeEEEeCC------------CCeEEEEecCCCceEEEeccCCCce-EEEE---EcCCCCceeE
Q psy8875 578 GT--MRKVLVRSYLDEPRSLALNPI------------DGWMYWSDWGQNAKIERAGMDGSHR-NMVI---VSDIKWPNGL 639 (734)
Q Consensus 578 G~--~~~~l~~~~l~~P~~iavD~~------------~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv---~~~l~~P~gl 639 (734)
.. .....+.........+++.|. .+.++++-. ..+.|...++..... ..++ .........|
T Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 55 233334455567789999885 344444432 235666665543222 1121 2223456789
Q ss_pred EEecCC--CeEEEEeCCCCeEEEEecCCCc---eEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCce
Q psy8875 640 TLDLVQ--RRLYWVDAKLNEISSCDYNGGN---RRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 640 avD~~~--~~LYw~D~~~~~I~~~~~dG~~---~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
++.+.. +.++++-...+.|...++.... ...++..........+|++ .+.+|+.+.. .+.|...+...+...
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGKW 291 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCcc
Confidence 998763 5555555556777777776543 3333322112233456677 3344554444 456655554444433
Q ss_pred E
Q psy8875 713 T 713 (734)
Q Consensus 713 ~ 713 (734)
.
T Consensus 292 ~ 292 (379)
T 3jrp_A 292 E 292 (379)
T ss_dssp E
T ss_pred c
Confidence 3
No 276
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.58 E-value=0.004 Score=67.72 Aligned_cols=211 Identities=13% Similarity=0.030 Sum_probs=128.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+.+|+|+|..+.+..+-...+.|+..++..+....++. ..-...+.+|++.+..++++++-...+.|.+.++.+..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 45688999998777777777778889888887554443332 12234577888887777888888888999999998877
Q ss_pred eEEEEcCC--CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875 581 RKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEI 658 (734)
Q Consensus 581 ~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I 658 (734)
..++.... ......+++++...+|+... ..+.|...+++|.....+ ........+|++.+.+..++.+-...+.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v 275 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGD--NVGNVILLNMDGKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTV 275 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEEC--SSSBEEEEESSSCBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEe--CCCcEeeeccCcceeEEE-ecccceEEeeeecCCCceEEEEecCccee
Confidence 66665432 23456889988655555444 346788888877543322 12233457888887777777766556677
Q ss_pred EEEecCCCc-eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 659 SSCDYNGGN-RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 659 ~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
...++.... ...+...........+|++. .+.++++-...+.|...+..+++....+
T Consensus 276 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 766654322 22221111111112344442 2333444444466666666565544443
No 277
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.55 E-value=0.045 Score=58.88 Aligned_cols=228 Identities=8% Similarity=-0.036 Sum_probs=131.1
Q ss_pred ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++........+. ....+.+|+|++. +.++.+-...+.|...++.++.. ...+......+..|++.+.+.
T Consensus 129 Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~- 205 (410)
T 1vyh_C 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGD- 205 (410)
T ss_dssp SSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCE-EECCCCCSSCEEEEEECSSSS-
T ss_pred CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEEEEEEeCCCC-
Confidence 3456666666544433333 4456788999875 44555666778888888774332 222222334567788886544
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
++++-...+.|.+.++........+.........+++.+.. .++++-. ..+.|...++........+.........|+
T Consensus 206 ~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s-~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 283 (410)
T 1vyh_C 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCS-NDQTVRVWVVATKECKAELREHRHVVECIS 283 (410)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEc-CCCeEEEEECCCCceeeEecCCCceEEEEE
Confidence 44555567899999986554444444555567888888754 4444432 235666666654443333333334455666
Q ss_pred EecCC-------------------CeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCc
Q psy8875 641 LDLVQ-------------------RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKA 700 (734)
Q Consensus 641 vD~~~-------------------~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~ 700 (734)
+.+.. +.+.++-...+.|...++........+.. ......+|++. .+.++++-...+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~ 361 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKT 361 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTE
T ss_pred EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 65432 44556666677888888765443333322 22334567773 3444445445566
Q ss_pred eEEEeccCCCceEEEe
Q psy8875 701 IYKANKFTGDNLTAIT 716 (734)
Q Consensus 701 v~~~~~~~G~~~~~l~ 716 (734)
|...+..+++.+..+.
T Consensus 362 i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 362 LRVWDYKNKRCMKTLN 377 (410)
T ss_dssp EEEECCTTSCCCEEEE
T ss_pred EEEEECCCCceEEEEc
Confidence 7777766666666554
No 278
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.55 E-value=0.021 Score=60.38 Aligned_cols=230 Identities=11% Similarity=-0.038 Sum_probs=131.4
Q ss_pred ccceEEeecCCCc-------eEEEecCCcceEEEeeecc---CC---eEEEEEeCCCcEEEEecCCCCc-----eEEEEe
Q psy8875 482 KHDIRKISLDHHE-------MTAIVNSTKSATAIDFVFR---TG---MIFWSDISEKKIYKAPIDEGSE-----RTVVIE 543 (734)
Q Consensus 482 ~~~I~~i~l~~~~-------~~~l~~~~~~~~~i~~d~~---~~---~lyw~d~~~~~I~~~~l~~g~~-----~~~~~~ 543 (734)
+..|+..++.... ...+......+..|+|.+. .+ .++++-...+.|+..++..+.. ...+ .
T Consensus 35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~ 113 (397)
T 1sq9_A 35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-D 113 (397)
T ss_dssp TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-C
T ss_pred CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-c
Confidence 3456666665544 3444444556788999875 14 4555555677788777775443 2222 2
Q ss_pred CC-----CCCccceeee----ccCCcEEEEeCCCCeEEEEeCCC-------CceE-----EEE------cCCCCCceeEE
Q psy8875 544 ED-----KTIADGLAVD----WIYSHIYWTDAHKNTIELANFEG-------TMRK-----VLV------RSYLDEPRSLA 596 (734)
Q Consensus 544 ~~-----~~~p~glAvD----~~~~~lY~td~~~~~I~~~~ldG-------~~~~-----~l~------~~~l~~P~~ia 596 (734)
.. ...+..+++. +.+..++++-...+.|.+.++.. .... .+. ......+..++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 193 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 193 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEE
Confidence 12 2556778887 66666144444457888877754 2222 232 23456688999
Q ss_pred EeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---C---CCCceeEEEecCCCeEEEEeCCC---CeEEEEecCCCc
Q psy8875 597 LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---D---IKWPNGLTLDLVQRRLYWVDAKL---NEISSCDYNGGN 667 (734)
Q Consensus 597 vD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---~---l~~P~glavD~~~~~LYw~D~~~---~~I~~~~~dG~~ 667 (734)
+.|.. .|+... ..+.|...++........+.. . ......|++++.+..|+.+. .. +.|...++....
T Consensus 194 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 194 ISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE 269 (397)
T ss_dssp ECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC
T ss_pred ECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc
Confidence 99866 444433 357788888765443333333 2 44567899987666665554 33 688888876544
Q ss_pred eEEEEcCCC-----------CCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 668 RRLVLYSPQ-----------TLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 668 ~~~i~~~~~-----------~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
....+.... .......|++. .+.++++-...+.|...+..+++.+..+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 433332200 22344567773 34444444455777777777777666665
No 279
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.55 E-value=0.0064 Score=74.29 Aligned_cols=217 Identities=8% Similarity=-0.021 Sum_probs=132.8
Q ss_pred ccceE-EeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIR-KISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~-~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
...|+ .+++.+.....+......+..++|.+....|+++. ..+.|+..++.++... .++.........+++.+.++.
T Consensus 357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~~~-~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPT-VIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEE-EEEECSSSCCCCEEECTTSCE
T ss_pred CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCCceE-EeccCCCCCccceEECCCCCe
Confidence 44566 66777666555554445678899998888887765 4568999999855443 333334445578999888888
Q ss_pred EEEEeCC---------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc----------------eE
Q psy8875 561 IYWTDAH---------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA----------------KI 615 (734)
Q Consensus 561 lY~td~~---------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~----------------~I 615 (734)
|.++... ...|++.++++..... +......+..+++.|...+|||+...... ++
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~-l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~ 513 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 513 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCcEEE-eeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCcee
Confidence 8877542 2589999998765333 33445567789999988889988642111 12
Q ss_pred EEec------------------------cCCCceE-EEEEcCCCCceeEEEecCCCeEEEE-------------eCCCCe
Q psy8875 616 ERAG------------------------MDGSHRN-MVIVSDIKWPNGLTLDLVQRRLYWV-------------DAKLNE 657 (734)
Q Consensus 616 ~~~~------------------------ldG~~~~-~lv~~~l~~P~glavD~~~~~LYw~-------------D~~~~~ 657 (734)
+.+. ++|...+ +.+........++++.+ .+++|++ ......
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~ 592 (1045)
T 1k32_A 514 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGV 592 (1045)
T ss_dssp EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEE
T ss_pred EEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCce
Confidence 2211 1221111 11101112345678865 4444443 233558
Q ss_pred EEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCC
Q psy8875 658 ISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
|+++++.+...+.+. ..+.++++ ++.+|+++..+ .|..++..+++
T Consensus 593 l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~--~i~~~d~~~~~ 639 (1045)
T 1k32_A 593 LLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD--GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT--SCEEEEESSCT
T ss_pred EEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC--cEEEEeCccCc
Confidence 999998877766654 22445666 56788888765 56666666666
No 280
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.55 E-value=0.021 Score=67.04 Aligned_cols=210 Identities=8% Similarity=0.002 Sum_probs=131.5
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+.+|+|++....|.... ..+.|...++..+.....+ ......+..+++.+.++.|..... .+.|.+.++....
T Consensus 12 h~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGE 88 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCC
T ss_pred CCCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCc
Confidence 345678899998766666554 5678888887754433333 334456788999877666666554 6899999987655
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
....+......+..+++.|...+|+.... .+.|...+++.. .....+...-.....+++.+..+.++++-...+.|.
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEET--TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcC--CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 54444455667899999998777776653 466777776654 333344444455678898864555666655668888
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEEE---CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
..++........+.. ........+++. .+.++++-...+.|...+..+++.+..+.
T Consensus 167 vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (814)
T ss_dssp EEETTCSSCSEEEEC-CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCcceeEEec-CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 888765443333322 111334455553 45555555555667666666665554443
No 281
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.54 E-value=0.032 Score=59.61 Aligned_cols=220 Identities=11% Similarity=0.032 Sum_probs=129.2
Q ss_pred ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
...|+..++.......+. .....+.+|+|.+....| ++-...+.|+..++..+.....+ ......+..|++.+.++.
T Consensus 118 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRN 195 (420)
T ss_dssp TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE-EEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCE
Confidence 345666666655544443 345678899999865544 45556788998888865554444 334456778999876555
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcC---C---------------------CCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRS---Y---------------------LDEPRSLALNPIDGWMYWSDWGQNAKIE 616 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~---~---------------------l~~P~~iavD~~~g~LYwtd~~~~~~I~ 616 (734)
|+ +-...+.|.+.++........+.. . ......++++|...+|+... ..+.|.
T Consensus 196 l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~ 272 (420)
T 3vl1_A 196 VL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--VSGVIT 272 (420)
T ss_dssp EE-EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE--TTSCEE
T ss_pred EE-EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc--CCCeEE
Confidence 55 444567898888865443333321 1 13334555666544555444 246677
Q ss_pred EeccCCCceEEEEEc-CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc--eEEEEcCCCCCCCCeEEEEECCEEEE
Q psy8875 617 RAGMDGSHRNMVIVS-DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN--RRLVLYSPQTLSHPFSISTFEDWLYW 693 (734)
Q Consensus 617 ~~~ldG~~~~~lv~~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~--~~~i~~~~~~~~~P~gl~v~~~~lyw 693 (734)
..++........+.. .......|++.+.+..++++-...+.|...++.... ...+.... ......+....+.+++
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~ 350 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNVYFAAGALFV 350 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEEEEETTEEEE
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEEEeCCCCEEE
Confidence 777754443333322 234567899987666355555566889998886543 34443211 1223345556777777
Q ss_pred EeCCCCceEEEeccC
Q psy8875 694 SDWQQKAIYKANKFT 708 (734)
Q Consensus 694 td~~~~~v~~~~~~~ 708 (734)
+-...+.|...+..+
T Consensus 351 s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 351 SSGFDTSIKLDIISD 365 (420)
T ss_dssp EETTTEEEEEEEECC
T ss_pred EecCCccEEEEeccC
Confidence 776666666665444
No 282
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=97.54 E-value=3.4e-05 Score=56.74 Aligned_cols=37 Identities=30% Similarity=0.839 Sum_probs=32.7
Q ss_pred CCCcccceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875 436 PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG 473 (734)
Q Consensus 436 ~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~ 473 (734)
++.|+|+|+|++|+|+|.|++||.+..+.++ |.+++.
T Consensus 5 ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~t-C~dide 41 (51)
T 1kig_L 5 NGGCDQFCREERSEVRCSCAHGYVLGDDSKS-CVSTER 41 (51)
T ss_dssp TTSSSSCCCEETTEECCCCCTTEEECTTSSC-EEECSS
T ss_pred CCCcCCEeEcCCCCeEEeCCCCcEECCCCCc-cccCCc
Confidence 5789999999999999999999999988777 887654
No 283
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.54 E-value=0.0068 Score=64.10 Aligned_cols=208 Identities=7% Similarity=-0.054 Sum_probs=122.1
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+.+|+|.+....| ++-...+.|+..++..+... ..+......+..|++.+....++++-...+.|.+.++.....
T Consensus 139 ~~~V~~v~~spdg~~l-~sgs~dg~v~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~ 216 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQA-VSGGKDFSVKVWDLSQKAVL-KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP 216 (357)
T ss_dssp SSCEEEEEECSSSSEE-EEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred CCCEEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence 3467889998755444 45556788888888744322 233333456778888877777777777778899888754432
Q ss_pred EEEE--cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 582 KVLV--RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 582 ~~l~--~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
...+ ......+..|++.|..+.++.+-. ....|...++........+.........|++.+.++++..+-...+.|.
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred eeeeeeccccccccchhhhhcccceEEEee-cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 2221 123345788999988787776642 2456776666443333233333445678898876666555555567888
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEecc-CCCceEEE
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKF-TGDNLTAI 715 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~-~G~~~~~l 715 (734)
..+++.......+ .......+|++. ++.++.+-...+.|+..+.. .|+...+|
T Consensus 296 iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 296 VLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred EEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 8887655433322 222345677773 45666665555666655543 23443333
No 284
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.53 E-value=0.0031 Score=77.03 Aligned_cols=208 Identities=12% Similarity=0.091 Sum_probs=131.8
Q ss_pred eeeeeccceEEeecCCCceEEEecC-----------CcceEEEeee-ccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC
Q psy8875 477 LLFARKHDIRKISLDHHEMTAIVNS-----------TKSATAIDFV-FRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE 544 (734)
Q Consensus 477 l~~~~~~~I~~i~l~~~~~~~l~~~-----------~~~~~~i~~d-~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~ 544 (734)
|++.....|+.+++.+.....+... ...+.+++|. +....|.++. .+.|+.+++.++... . +..
T Consensus 259 la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~-~-~~~ 334 (1045)
T 1k32_A 259 ILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVL-K-VPE 334 (1045)
T ss_dssp EEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEE-E-CSC
T ss_pred EEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceE-E-ccC
Confidence 4445566677766644433322111 1246678898 8777777765 667888887744322 2 221
Q ss_pred CCC-CccceeeeccCCcEEEEeCCCCeEE-EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875 545 DKT-IADGLAVDWIYSHIYWTDAHKNTIE-LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 545 ~~~-~p~glAvD~~~~~lY~td~~~~~I~-~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
... .+..+++. .++.|+++.. ...|+ +.++++...+.+. .....+..+++.|...+|+++.. ...|+..++.+
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~--~~~v~~~d~~t 409 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLET 409 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET--TSEEEEEETTT
T ss_pred CCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECC--CCeEEEEECCC
Confidence 222 34455555 4456666655 56888 8888877665554 44567889999998888887763 36899999876
Q ss_pred CceEEEEEcCCCCceeEEEecCCCeEEEEeCC---------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEE
Q psy8875 623 SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK---------LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWL 691 (734)
Q Consensus 623 ~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~---------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~l 691 (734)
...+.++.........+++.+.+.+|.++... ...|+.+++++...+.+. .....+..+++ .+.+|
T Consensus 410 g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~---~~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 410 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---TENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS---CSSSBEEEEEECTTSCEE
T ss_pred CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee---CCCcccCCceEcCCCCEE
Confidence 66655554444445789999888888887542 258999998876543332 22334556666 45678
Q ss_pred EEEeC
Q psy8875 692 YWSDW 696 (734)
Q Consensus 692 ywtd~ 696 (734)
||+..
T Consensus 487 ~~~s~ 491 (1045)
T 1k32_A 487 YYLSY 491 (1045)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 88765
No 285
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.52 E-value=0.021 Score=60.45 Aligned_cols=180 Identities=13% Similarity=0.043 Sum_probs=111.8
Q ss_pred ccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC--CCCccceeeec
Q psy8875 482 KHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED--KTIADGLAVDW 556 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~--~~~p~glAvD~ 556 (734)
+..|+..++.......+.. ....+.+|+|.+..+.++++-...+.|...++.+ .....+.... ...+..|++.+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC
Confidence 3567777776655544443 4567789999875556666666778888888873 3333332211 13467888887
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC---CceEEEEEcCC
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG---SHRNMVIVSDI 633 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG---~~~~~lv~~~l 633 (734)
....|+ +-...+.|.+.++.+.....+. ........|++.|....++++-. ..+.|...++.. ....+......
T Consensus 174 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 174 SRQMLA-TGDSTGRLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp TTTEEE-EEETTSEEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred CCCEEE-EECCCCCEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEecCC
Confidence 655554 4445689999999876655554 44567899999997774555542 235666666542 11111111344
Q ss_pred CCceeEEEec-CCCeEEEEeCCCCeEEEEecCCC
Q psy8875 634 KWPNGLTLDL-VQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 634 ~~P~glavD~-~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
.....|++++ .+..|+.+ ...+.|...++...
T Consensus 251 ~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDW 283 (383)
T ss_dssp SCEEEEEECTTTSCEEEEE-ESSSEEEEEETTBT
T ss_pred CceEEEEEcCCCCCEEEEE-cCCCcEEEEECCCC
Confidence 5678899987 55555544 45678888887643
No 286
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.52 E-value=0.05 Score=55.64 Aligned_cols=160 Identities=9% Similarity=0.035 Sum_probs=99.9
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+.+|+|++....|. +-...+.|...++..+..... +.........+++.+..+ +.++-...+.|.+.++.....
T Consensus 13 ~~~V~~~~fsp~~~~l~-s~~~dg~v~lWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVL-TTLYSGRVELWNYETQVEVRS-IQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp CSCEEEEEECSSSSEEE-EEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE
T ss_pred CCceEEEEECCCCCEEE-EEcCCCcEEEEECCCCceeEE-eeccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcE
Confidence 45678899998655544 445678888888874433222 222333456777776544 444555578999999876555
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
...+.........|++.|...+|+-... .+.|...++... .....+.........+++.+..+.++.+-...+.|..
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECC--CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 4444455667889999987666554442 355666555433 2222333344456788888766666666666678888
Q ss_pred EecCCC
Q psy8875 661 CDYNGG 666 (734)
Q Consensus 661 ~~~dG~ 666 (734)
.++...
T Consensus 168 wd~~~~ 173 (304)
T 2ynn_A 168 WSLGQS 173 (304)
T ss_dssp EETTCS
T ss_pred EECCCC
Confidence 887543
No 287
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.51 E-value=0.03 Score=60.25 Aligned_cols=164 Identities=10% Similarity=0.039 Sum_probs=103.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+..++|++.. .++++-...+.|...++..+.....+ ......+..|++.+. +.+.++-...+.|.+.++.+..
T Consensus 107 h~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp CSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSC
T ss_pred cCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc
Confidence 34567889998754 45566667888988888866554443 323445678888854 5566666667888888887655
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
....+.........+++.|...+|+-.. ..+.|...++........+.....+...+++.+. +.++++-...+.|..
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s--~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRV 260 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEE
Confidence 4333444455678999998766555444 2467777776544333333444455677787644 445555555677877
Q ss_pred EecCCCceEE
Q psy8875 661 CDYNGGNRRL 670 (734)
Q Consensus 661 ~~~dG~~~~~ 670 (734)
.++.......
T Consensus 261 wd~~~~~~~~ 270 (410)
T 1vyh_C 261 WVVATKECKA 270 (410)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCceee
Confidence 7776554433
No 288
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=97.51 E-value=0.0043 Score=72.13 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=110.0
Q ss_pred eeeeeeccceEEeecCCCceEEEecC-Cc------------------ceEEEeeeccCCeEEEEEeCC------------
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIVNS-TK------------------SATAIDFVFRTGMIFWSDISE------------ 524 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~~~-~~------------------~~~~i~~d~~~~~lyw~d~~~------------ 524 (734)
.|.+.....|+.+++.+.....+... .. ...+++|.+..+.|+++....
T Consensus 127 ~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~ 206 (723)
T 1xfd_A 127 QLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206 (723)
T ss_dssp CEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred EEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence 45566667888888877666555432 11 236899999888887765321
Q ss_pred ---------------------CcEEEEecCCCCceEEEEeCC-----CCCccceeeeccCCcEEE-EeCC--CCeEEEEe
Q psy8875 525 ---------------------KKIYKAPIDEGSERTVVIEED-----KTIADGLAVDWIYSHIYW-TDAH--KNTIELAN 575 (734)
Q Consensus 525 ---------------------~~I~~~~l~~g~~~~~~~~~~-----~~~p~glAvD~~~~~lY~-td~~--~~~I~~~~ 575 (734)
..|+..++.++.....+.... ......+++.+.++.|+. ++.. ...|++.+
T Consensus 207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 146666665433222221100 112334666665555533 3332 34688888
Q ss_pred CCCCceEEEEcC-CCC--C--ceeEEEeCCCCeEEEE-ecCC-----CceEEEec-cCCCc---eEEEEEcCCCCceeEE
Q psy8875 576 FEGTMRKVLVRS-YLD--E--PRSLALNPIDGWMYWS-DWGQ-----NAKIERAG-MDGSH---RNMVIVSDIKWPNGLT 640 (734)
Q Consensus 576 ldG~~~~~l~~~-~l~--~--P~~iavD~~~g~LYwt-d~~~-----~~~I~~~~-ldG~~---~~~lv~~~l~~P~gla 640 (734)
+.+.....++.. ... . +..+++.|...+|+++ .... ..+|+..+ .++.. .+.+..........++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 876554444321 111 1 3578999888878875 3221 23788888 56654 3333322222223368
Q ss_pred EecCCCeEEEEeC----CCCeEEEEecCCC
Q psy8875 641 LDLVQRRLYWVDA----KLNEISSCDYNGG 666 (734)
Q Consensus 641 vD~~~~~LYw~D~----~~~~I~~~~~dG~ 666 (734)
+++.+++||++.. ....|++++++|.
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 9999999998754 3457888888775
No 289
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.51 E-value=0.0096 Score=61.61 Aligned_cols=224 Identities=8% Similarity=0.005 Sum_probs=124.7
Q ss_pred ccceEEeecCCCc----eEEEecCCcceEEEeeeccCC-eEEEEEeCCCcEEEEec-CCCCceEEEEeC--CCCCcccee
Q psy8875 482 KHDIRKISLDHHE----MTAIVNSTKSATAIDFVFRTG-MIFWSDISEKKIYKAPI-DEGSERTVVIEE--DKTIADGLA 553 (734)
Q Consensus 482 ~~~I~~i~l~~~~----~~~l~~~~~~~~~i~~d~~~~-~lyw~d~~~~~I~~~~l-~~g~~~~~~~~~--~~~~p~glA 553 (734)
+..|+..++.... ...+......+.+++|.+... .|+ +-...+.|+..++ ..+. . ..+.. ....+..|+
T Consensus 32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~-~-~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY-VGTVQGEILKVDLIGSPS-F-QALTNNEANLGICRIC 108 (342)
T ss_dssp TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEE-EEETTSCEEEECSSSSSS-E-EECBSCCCCSCEEEEE
T ss_pred CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEE-EEcCCCeEEEEEeccCCc-e-EeccccCCCCceEEEE
Confidence 3445555555444 333444556788999998655 454 4446788999888 7443 2 33333 334567888
Q ss_pred eeccCCcEEEEeCCCCeEEEEeCCC---------CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-C
Q psy8875 554 VDWIYSHIYWTDAHKNTIELANFEG---------TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-S 623 (734)
Q Consensus 554 vD~~~~~lY~td~~~~~I~~~~ldG---------~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~ 623 (734)
+.+ +.++++-...+.|.+.++.. ......+ .....+.++++.+.. |+... ..+.|...++.. .
T Consensus 109 ~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--l~~~~--~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 109 KYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKIFTMDTNSSR--LIVGM--NNSQVQWFRLPLCE 181 (342)
T ss_dssp EET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCEEEEEECSSE--EEEEE--STTEEEEEESSCCT
T ss_pred eCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCceEEEEecCCc--EEEEe--CCCeEEEEECCccc
Confidence 887 55555656678898888753 1111111 133467788887643 55554 246777777765 2
Q ss_pred c--eEEEEEcCCCCceeEEEec-CCCeEEEEeCCCCeEEEEecCCC------ceEEEEcCCCC-------CCCCeEEEEE
Q psy8875 624 H--RNMVIVSDIKWPNGLTLDL-VQRRLYWVDAKLNEISSCDYNGG------NRRLVLYSPQT-------LSHPFSISTF 687 (734)
Q Consensus 624 ~--~~~lv~~~l~~P~glavD~-~~~~LYw~D~~~~~I~~~~~dG~------~~~~i~~~~~~-------~~~P~gl~v~ 687 (734)
. ........-..+..|++.+ .+..|+.+ ...+.|...+++.. .....+..... .....+|++.
T Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 260 (342)
T 1yfq_A 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp TCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred cccceeeecCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence 2 2222223334567888876 55555444 44667777665543 32222322111 1134566663
Q ss_pred -CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 688 -EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 688 -~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.+.++++-...+.|...+..+++.+..+.
T Consensus 261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred CCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 34444444455677777776666555443
No 290
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.50 E-value=0.027 Score=63.52 Aligned_cols=236 Identities=9% Similarity=-0.045 Sum_probs=134.2
Q ss_pred eeeeeeccceEEeecCCC-----ceEEEecCCcc-eEEEeeec--cCCeEEEEEeCCCcEEEEecCCC------C-ceEE
Q psy8875 476 SLLFARKHDIRKISLDHH-----EMTAIVNSTKS-ATAIDFVF--RTGMIFWSDISEKKIYKAPIDEG------S-ERTV 540 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~-----~~~~l~~~~~~-~~~i~~d~--~~~~lyw~d~~~~~I~~~~l~~g------~-~~~~ 540 (734)
+|++.....|+..++... ....+...... +.+++|.+ ....|+.. ...+.|...++..+ . ....
T Consensus 32 ~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~-~~dg~v~vw~~~~~~~~~~~~~~~~~ 110 (615)
T 1pgu_A 32 AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG-DESGKVIVWGWTFDKESNSVEVNVKS 110 (615)
T ss_dssp EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE-ETTSEEEEEEEEEEGGGTEEEEEEEE
T ss_pred EEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe-cCCCEEEEEeCCCCcccccccccccc
Confidence 455555666777777644 33344334556 88999998 55555444 45677777776423 1 1112
Q ss_pred EEeCCCCCccceeeeccCCcEEEEeCCC---CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875 541 VIEEDKTIADGLAVDWIYSHIYWTDAHK---NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER 617 (734)
Q Consensus 541 ~~~~~~~~p~glAvD~~~~~lY~td~~~---~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~ 617 (734)
.+......+..|++.+.++.|+.+.... +.|.+.+ .+. ....+.........+++.|....++.+-. ..+.|..
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~v 187 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVG-DDGSVVF 187 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEE-TTTEEEE
T ss_pred hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCC-cceeeecCCccEEEEEECCCCCcEEEEEe-CCCcEEE
Confidence 2222345677899988777777766542 4566655 222 22233345567889999987764555542 3466777
Q ss_pred eccCCCceEEEEEcCCC---CceeEEEecC-CCeEEEEeCCCCeEEEEecCCCceEEEE-cCC-CCCCCCeEEEEECCEE
Q psy8875 618 AGMDGSHRNMVIVSDIK---WPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVL-YSP-QTLSHPFSISTFEDWL 691 (734)
Q Consensus 618 ~~ldG~~~~~lv~~~l~---~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~-~~~-~~~~~P~gl~v~~~~l 691 (734)
.++........+..... ....|++.+. +..|+.+ ...+.|...++........+ ... .......+|++..+.+
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 266 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSE
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCE
Confidence 66654333333333333 4678899876 4455444 45678888887654443333 100 1123345666644444
Q ss_pred EEEeCCCCceEEEeccCCCceEEEe
Q psy8875 692 YWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 692 ywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+++-...+.|...+..+++.+..+.
T Consensus 267 l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 267 FATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEc
Confidence 4554445677777776676655554
No 291
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.50 E-value=0.049 Score=63.91 Aligned_cols=227 Identities=13% Similarity=0.051 Sum_probs=132.3
Q ss_pred cceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 483 HDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 483 ~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
..|+..++.... ...+......+.+++|.+....|.... ..+.|...++..+.....+ ......+..+++.+.+..|
T Consensus 35 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l 112 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYV 112 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEE
T ss_pred CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEE
Confidence 345555654433 333333456788999998776666554 5788888888755443333 3344567788888766666
Q ss_pred EEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCceeE
Q psy8875 562 YWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNGL 639 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~gl 639 (734)
+.+. ..+.|.+.++... .....+.........+++.|..+.++++-. ..+.|...++........+.. .......+
T Consensus 113 ~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 113 LSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (814)
T ss_dssp EEEE-TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred EEEc-CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence 6544 4688999998765 333444455566789999985565555543 346787777755443333332 22556778
Q ss_pred EEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 640 TLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 640 avD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++.+. .+.++++-...+.|...++........+.. .......+++. .+.++++-...+.|...+..+++.+..+
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 88652 344444555567888888765544333332 12233455552 2333444333455655555555544433
No 292
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=97.49 E-value=0.0019 Score=75.21 Aligned_cols=219 Identities=7% Similarity=0.034 Sum_probs=121.9
Q ss_pred cceEEeecCCCceEEEecCCc---ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC------------
Q psy8875 483 HDIRKISLDHHEMTAIVNSTK---SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT------------ 547 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~---~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~------------ 547 (734)
..|+..++.+.....+..... .+..++|.+..+.|.++.. +.|+..++.++....+. .....
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLY 167 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHH
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEe-cCCCCCceECcccceeE
Confidence 445566666655544432211 2556888888888887753 67898888855444332 21111
Q ss_pred ------CccceeeeccCCcEEEEeCCC---------------------------------CeEEEEeCCCCce-EEEEcC
Q psy8875 548 ------IADGLAVDWIYSHIYWTDAHK---------------------------------NTIELANFEGTMR-KVLVRS 587 (734)
Q Consensus 548 ------~p~glAvD~~~~~lY~td~~~---------------------------------~~I~~~~ldG~~~-~~l~~~ 587 (734)
.+.++++.+.++.|+++.... ..|.+.++.+... ..+...
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 225688887788787764321 1566677665543 222211
Q ss_pred C-----CCCceeEEEeCCCCeEE-EEecC-CCceEEEeccCCCceEEEEEc-CCCC----ceeEEEecCCCeEEEE-eCC
Q psy8875 588 Y-----LDEPRSLALNPIDGWMY-WSDWG-QNAKIERAGMDGSHRNMVIVS-DIKW----PNGLTLDLVQRRLYWV-DAK 654 (734)
Q Consensus 588 ~-----l~~P~~iavD~~~g~LY-wtd~~-~~~~I~~~~ldG~~~~~lv~~-~l~~----P~glavD~~~~~LYw~-D~~ 654 (734)
. ......+++.|...+|+ +++.+ ....|+..++++.....++.. .-.+ +..+++.+.+.+|+++ ...
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 0 12335688888655553 33322 235788888876554444332 1122 2478898888888886 433
Q ss_pred CC------eEEEEe-cCCCc---eEEEEcCCCCCCCCeE-EEE--ECCEEEEEeCC----CCceEEEecc
Q psy8875 655 LN------EISSCD-YNGGN---RRLVLYSPQTLSHPFS-IST--FEDWLYWSDWQ----QKAIYKANKF 707 (734)
Q Consensus 655 ~~------~I~~~~-~dG~~---~~~i~~~~~~~~~P~g-l~v--~~~~lywtd~~----~~~v~~~~~~ 707 (734)
.+ .|+.++ .+++. .+.+.... . .... +++ .+++||++... ...|++++..
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~-~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGD--W-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--S-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred cCCCcceeEEEEEeccCCCCccceeEeecCC--e-EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 33 688888 56655 44333211 1 1122 345 46788877543 3467777643
No 293
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.036 Score=57.87 Aligned_cols=206 Identities=8% Similarity=-0.019 Sum_probs=114.8
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~ 579 (734)
...+.+|+|++....|. +-...+.|+..++..+....+ .+......+..|++.+. .+.++++-...+.|.+.++...
T Consensus 11 ~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLA-TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCEEEEEECSSSSEEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred cccEEEEEEcCCCCEEE-EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 34677888887655544 444567777777653222222 22222334556666433 1455555555688999888765
Q ss_pred c--eEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCC--ceEEEEEcCCCCceeEEEecC---------
Q psy8875 580 M--RKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGS--HRNMVIVSDIKWPNGLTLDLV--------- 644 (734)
Q Consensus 580 ~--~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~--~~~~lv~~~l~~P~glavD~~--------- 644 (734)
. ....+.........+++.|. ..+|+.+.. .+.|...++... .....+.........|++.+.
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC--CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence 4 22333345567889999987 555555543 466766666544 233334444455678888764
Q ss_pred ---CCeEEEEeCCCCeEEEEecCCCc-eEEEE-cCCCCCCCCeEEEEEC----CEEEEEeCCCCceEEEeccCCC
Q psy8875 645 ---QRRLYWVDAKLNEISSCDYNGGN-RRLVL-YSPQTLSHPFSISTFE----DWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 645 ---~~~LYw~D~~~~~I~~~~~dG~~-~~~i~-~~~~~~~~P~gl~v~~----~~lywtd~~~~~v~~~~~~~G~ 710 (734)
++.++++-...+.|...++.... ...++ ..........+|++.. +.++++-...+.|...+..++.
T Consensus 168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp --CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 34555555556778777765433 22221 1111223345677742 4555555555666666655554
No 294
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.44 E-value=0.02 Score=59.62 Aligned_cols=116 Identities=7% Similarity=-0.041 Sum_probs=78.9
Q ss_pred cceEEEeeeccC---CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 503 KSATAIDFVFRT---GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 503 ~~~~~i~~d~~~---~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
..+.+++|.+.. +.++++-...+.|...++..+..... +......+..|++.+..++++++-...+.|.+.++...
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 457888998763 45666666788899988875544333 33344567788888756667777666789999999765
Q ss_pred ceEEEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875 580 MRKVLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 580 ~~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld 621 (734)
.....+ ......+..|+++|...+|+.+.. .+.|...++.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~ 191 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DHSLKLWRIN 191 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEET--TSCEEEEESC
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecC--CCCEEEEECC
Confidence 554444 345567889999987666665553 3566666554
No 295
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.41 E-value=0.028 Score=58.70 Aligned_cols=209 Identities=8% Similarity=-0.104 Sum_probs=115.0
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
..+.+++|.+....| ++-...+.|+..++..+.. ....+......+..|++.+.+..|+.+ ...+.|.+.++.....
T Consensus 9 ~~i~~~~~s~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 9 EPISCHAWNKDRTQI-AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTW 86 (372)
T ss_dssp SCCCEEEECTTSSEE-EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEE
T ss_pred CCeEEEEECCCCCEE-EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-cCCCeEEEEECCCCee
Confidence 355677887755444 4444567787777774431 222233344567789998755555444 4567888888865542
Q ss_pred E-EEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce----EEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875 582 K-VLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR----NMVIVSDIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 582 ~-~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~----~~lv~~~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
. .+. ......+..+++.|...+|+.... .+.|...+++.... ..+..........|++.+.+..|+.+. ..
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 163 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CD 163 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-TT
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeC--CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-CC
Confidence 2 222 334556789999987777777663 35555555544332 111112234567888886555555443 45
Q ss_pred CeEEEEecCC----------------CceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 656 NEISSCDYNG----------------GNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 656 ~~I~~~~~dG----------------~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+.|...++.. ...+.+...........+|++. .+.++++-...+.|...+..+++.+..+.
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 6777777431 0111111111222345567773 33344444445667777776776655554
No 296
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.41 E-value=0.024 Score=66.00 Aligned_cols=221 Identities=8% Similarity=0.063 Sum_probs=125.0
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC---------------CcEEEEecCCCCce-EEEEeCC--
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE---------------KKIYKAPIDEGSER-TVVIEED-- 545 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~---------------~~I~~~~l~~g~~~-~~~~~~~-- 545 (734)
.|+.+++.+.....+........+++|.+..+.||++.... ..|++.++.++... ..+....
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~ 231 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE 231 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred EEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC
Confidence 68888888766544322112245688988888898876432 24888888754433 2333321
Q ss_pred CCCccceeeeccCCcEEEEeC-C---CCeEEEEeCCC------C--ceEEEEcCCCCCceeEEEeCCCCeEEEEecC--C
Q psy8875 546 KTIADGLAVDWIYSHIYWTDA-H---KNTIELANFEG------T--MRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--Q 611 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~-~---~~~I~~~~ldG------~--~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~ 611 (734)
.....++++.+.++.|+++.. . ...|++.++++ . ..+.|.... . ...-.+.+..++||++... .
T Consensus 232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-E-GEYDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-S-SCEEEEEEETTEEEEEECTTCT
T ss_pred CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-C-cEEEEEeccCCEEEEEECCCCC
Confidence 112347888888888887754 2 46899999874 2 234444222 1 1223466667888887532 2
Q ss_pred CceEEEeccCCCc---eEEEEEcCC-CCceeEEEecCCCeEEEEeCC--CCeEEEEec-CCCceEEEEcCCCCCCCCeEE
Q psy8875 612 NAKIERAGMDGSH---RNMVIVSDI-KWPNGLTLDLVQRRLYWVDAK--LNEISSCDY-NGGNRRLVLYSPQTLSHPFSI 684 (734)
Q Consensus 612 ~~~I~~~~ldG~~---~~~lv~~~l-~~P~glavD~~~~~LYw~D~~--~~~I~~~~~-dG~~~~~i~~~~~~~~~P~gl 684 (734)
..+|+++++++.. .+.++...- ....++++. .+++|+++-.. ..+|+.+++ +|+..+.+.. + .....++
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~--~~~v~~~ 385 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-E--VGSVVGY 385 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-C--SSEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-C--CceEEEE
Confidence 4689999998754 244543322 234566664 47778777543 347888888 6664444421 1 1222333
Q ss_pred EE--ECCEEEEEe--C-CCCceEEEeccCCC
Q psy8875 685 ST--FEDWLYWSD--W-QQKAIYKANKFTGD 710 (734)
Q Consensus 685 ~v--~~~~lywtd--~-~~~~v~~~~~~~G~ 710 (734)
++ .++.|+++- . .-..|+.++..+|+
T Consensus 386 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 386 SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33 233555442 1 12356666655554
No 297
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=97.38 E-value=8.9e-05 Score=54.96 Aligned_cols=37 Identities=27% Similarity=0.640 Sum_probs=32.3
Q ss_pred CCCcccceeccCC-ceEEecCCCeeeCCCCCcccccccc
Q psy8875 436 PGSCSQICLNEKG-GFKCECVAGYIKDPHHPTQCKAAEG 473 (734)
Q Consensus 436 ~~~C~~~C~n~~g-~~~C~C~~gy~~~~~~~t~C~~~~~ 473 (734)
++.|+|+|+|+.+ +|.|.|++||.+..++++ |.+++.
T Consensus 6 nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~t-C~d~de 43 (53)
T 2bz6_L 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS-CTPTVE 43 (53)
T ss_dssp GGGCSSEEEEETTTEEEEECCTTEEECTTSSC-EEECSS
T ss_pred CCCcCCEeEcCCCCCEEeeCCCCCEECCCCCc-ccCCcc
Confidence 4679999999999 799999999999988777 887654
No 298
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.049 Score=57.80 Aligned_cols=204 Identities=10% Similarity=-0.061 Sum_probs=119.6
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~ 582 (734)
..+..|+|.+....|+. -...+.|+..+.. +.... .+......+..|++.+.+..|+.+. ..+.|.+.++......
T Consensus 109 ~~v~~~~~s~~~~~l~~-~~~dg~i~i~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVT-GVENGELRLWNKT-GALLN-VLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTVM 184 (425)
T ss_dssp BCEEEEEECTTSSEEEE-EETTSCEEEEETT-SCEEE-EECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEEE
T ss_pred CceEEEEEcCCCCEEEE-EeCCCeEEEEeCC-CCeee-eccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEE
Confidence 36789999986555554 4456778777744 33333 3333445677888887666566554 4678888888655443
Q ss_pred EEEcCCCCC---------------ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875 583 VLVRSYLDE---------------PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 583 ~l~~~~l~~---------------P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~ 647 (734)
..+...... +..+++.+. +.++... ..+.|...++........+.........|++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPG--PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEET-TEEEEEC--GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEc--CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence 333322222 677888764 5544443 2467777777654433333333445678899876665
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 648 LYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
|+.+. ..+.|...++........+.. ......+|++..+.++++-...+.|...+..+++.+..+.
T Consensus 262 l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 327 (425)
T 1r5m_A 262 LLSAS-DDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI 327 (425)
T ss_dssp EEEEE-TTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEc-CCCEEEEEECCCCccceEecC--CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc
Confidence 55554 557788888765443333321 2334566777543255555555777777766666555554
No 299
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=97.36 E-value=8.9e-05 Score=76.34 Aligned_cols=47 Identities=32% Similarity=0.923 Sum_probs=42.1
Q ss_pred cccccccC-CCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 388 GVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 388 ~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
+.|||..+ +++|+|.|.++.++|+|.|++||+|..++++|...++|.
T Consensus 1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~ 48 (283)
T 3f1s_B 1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 48 (283)
T ss_dssp --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence 35899887 899999999999999999999999999999999988874
No 300
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=97.36 E-value=0.00011 Score=55.70 Aligned_cols=37 Identities=30% Similarity=0.713 Sum_probs=32.0
Q ss_pred CCCcccceeccC-CceEEecCCCeeeCCCCCcccccccc
Q psy8875 436 PGSCSQICLNEK-GGFKCECVAGYIKDPHHPTQCKAAEG 473 (734)
Q Consensus 436 ~~~C~~~C~n~~-g~~~C~C~~gy~~~~~~~t~C~~~~~ 473 (734)
++.|+|+|+|++ |+|.|.|++||.+..++++ |.++..
T Consensus 6 nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~t-C~d~~~ 43 (59)
T 2wph_E 6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKS-CEPAVP 43 (59)
T ss_dssp GGGCSSEEEECSTTCEEEECCTTEEECTTSSC-EEESSS
T ss_pred CCCcCCEeEeCCCCCEEeeCCCCcEECCCCCc-ccCCCC
Confidence 478999999999 6999999999999988777 887543
No 301
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.34 E-value=0.18 Score=51.49 Aligned_cols=228 Identities=13% Similarity=0.033 Sum_probs=131.4
Q ss_pred cceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 483 HDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 483 ~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
..|+.-++..... ..+......+.+++|.+..+.|+ +-...+.|+..++..+..... +......+..|++.+.+. +
T Consensus 35 g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~-~ 111 (304)
T 2ynn_A 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWII-VGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKP-Y 111 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEE-EEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSS-E
T ss_pred CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEE-EECCCCEEEEEECCCCcEEEE-EeCCCCcEEEEEEcCCCC-E
Confidence 4455555554332 23333344567888887655554 445678888888875543333 333445677899986654 4
Q ss_pred EEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEEEcCCCCceeE
Q psy8875 562 YWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVIVSDIKWPNGL 639 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l~~P~gl 639 (734)
+++-...+.|.+.++... .....+.........+++.|..+.++.+-. ..+.|...++..... ..+..........+
T Consensus 112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 190 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence 556566788999988654 333344455566789999987766666653 345666666643332 22222222333445
Q ss_pred EEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 640 TLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 640 avD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
++.+. .+.+..+-...+.|...++........+.. .......+++. .+.++++-...+.|...+..+++.+..+.
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc
Confidence 55442 344445555667888888765544333332 22233455553 34455555555777777777777666654
No 302
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.34 E-value=0.0084 Score=70.25 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=107.2
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC-------------CcEEEEecCCCCce-EEEEeCCCCC
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE-------------KKIYKAPIDEGSER-TVVIEEDKTI 548 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~-------------~~I~~~~l~~g~~~-~~~~~~~~~~ 548 (734)
..|+.+++++..............+++|.+. +.||++.... .+|++.++.++... ..+.. ....
T Consensus 189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~ 266 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-TPEL 266 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-CTTC
T ss_pred EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-cCCC
Confidence 3588888887665433111111246788888 8888876432 24888887644332 33333 2222
Q ss_pred ---ccceeeeccCCcEEEEeCC----CCeEEEEeCCCC--c-eEEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEE
Q psy8875 549 ---ADGLAVDWIYSHIYWTDAH----KNTIELANFEGT--M-RKVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIE 616 (734)
Q Consensus 549 ---p~glAvD~~~~~lY~td~~----~~~I~~~~ldG~--~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~ 616 (734)
..++++.+.++.|+++-.. ...|++.++++. . .+.|... ....... +.+..+.||+.... ...+|+
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~ 344 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWFVSGDGAPLKKIV 344 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 3467777777777776532 458999998765 3 3444422 2222222 44667788777532 246899
Q ss_pred EeccCCC--ceEEEEEcCCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEE
Q psy8875 617 RAGMDGS--HRNMVIVSDIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLV 671 (734)
Q Consensus 617 ~~~ldG~--~~~~lv~~~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i 671 (734)
++++++. ..+.++...-....+++++ +++|+++-. ...+|+.++++|+..+.+
T Consensus 345 ~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 345 RVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred EEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence 9999873 3445554332223455554 778887753 345788888887755444
No 303
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.33 E-value=0.15 Score=53.34 Aligned_cols=211 Identities=10% Similarity=0.004 Sum_probs=119.4
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC------ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS------ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~------~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
....+.+++|.+... ++.+-...+.|....+.... ....+ ......+..+++.+....|+ +-...+.|.+.
T Consensus 105 ~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~-t~s~D~~v~lw 181 (354)
T 2pbi_B 105 PCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQIL-TASGDGTCALW 181 (354)
T ss_dssp SSSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEE-EEETTSEEEEE
T ss_pred CCCCEEEEEECCCCC-EEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEE-EEeCCCcEEEE
Confidence 334567888887544 44455556666665554221 11122 11233456677775544444 55557889999
Q ss_pred eCCCCceEEEEcCCCCCceeEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 575 NFEGTMRKVLVRSYLDEPRSLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 575 ~ldG~~~~~l~~~~l~~P~~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
++........+.........+++.|. .+.++++-. ..+.|...++........+.......++|++.+.+..|+ +-.
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs-~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s 259 (354)
T 2pbi_B 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG-CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA-SGS 259 (354)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEE
T ss_pred eCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEE-EEe
Confidence 98655444344344556677888775 345555542 346777777754433333333345567899986555554 444
Q ss_pred CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
..+.|...++.......++...........+++. .+.+..+-...+.|...+..+|+.+..+.
T Consensus 260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323 (354)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence 5678888887765444444322222234456663 45555555555677777777777665553
No 304
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.33 E-value=0.033 Score=58.83 Aligned_cols=210 Identities=7% Similarity=0.019 Sum_probs=123.0
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe------------CCCCCccceeeeccCCcEEEEeCCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE------------EDKTIADGLAVDWIYSHIYWTDAHK 568 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~------------~~~~~p~glAvD~~~~~lY~td~~~ 568 (734)
....+.+|+|.+..+.++++-...+.|...++..+.....+.. .....+..|++.+..+.++++-...
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 3456788999873455555555678888888875543222210 1234566788876566667776667
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC---eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCC
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG---WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ 645 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g---~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~ 645 (734)
+.|.+.++........+. .......+++.+... +|+... ..+.|...++........+.........|++.+.+
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT--RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE--SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc--CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 899999998765544442 334567777776533 444443 24667777775443333333344456789998777
Q ss_pred CeEEEEeCCCCeEEEEecCCCce-EEEEcC-------------CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875 646 RRLYWVDAKLNEISSCDYNGGNR-RLVLYS-------------PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 646 ~~LYw~D~~~~~I~~~~~dG~~~-~~i~~~-------------~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.+|+++-...+.|...++..... ...+.. ........+|++. .+.++++-...+.|...+..+++
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 76666666667888888754321 111100 0112234566773 33344444445677777777666
Q ss_pred ceE
Q psy8875 711 NLT 713 (734)
Q Consensus 711 ~~~ 713 (734)
...
T Consensus 279 ~~~ 281 (408)
T 4a11_B 279 NTL 281 (408)
T ss_dssp BCC
T ss_pred cce
Confidence 543
No 305
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.33 E-value=0.087 Score=61.51 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=130.6
Q ss_pred ceEEeecC---CCceEEEecC--C-----cceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCc
Q psy8875 484 DIRKISLD---HHEMTAIVNS--T-----KSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIA 549 (734)
Q Consensus 484 ~I~~i~l~---~~~~~~l~~~--~-----~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p 549 (734)
.|+++... +.....++.. + ....+++|.+..++|.++.... ..|+..++.+|......+. .. ..
T Consensus 134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-~~-~~ 211 (741)
T 1yr2_A 134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-WV-KF 211 (741)
T ss_dssp EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-EE-ES
T ss_pred EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-Cc-ee
Confidence 45666665 5555554321 1 1456788988888777664332 3589999986654333222 11 12
Q ss_pred cceeeeccCCcEEEEeCCC-------------CeEEEEeCCCCc--eEEEEcCCC--CCceeEEEeCCCCeEEEEecC--
Q psy8875 550 DGLAVDWIYSHIYWTDAHK-------------NTIELANFEGTM--RKVLVRSYL--DEPRSLALNPIDGWMYWSDWG-- 610 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~-------------~~I~~~~ldG~~--~~~l~~~~l--~~P~~iavD~~~g~LYwtd~~-- 610 (734)
.+++..+. +.||++.... .+|++.++.+.. .+.+..... ....++++.|...+|+++...
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 45666666 7788876432 358888886543 233433221 134688898877788777642
Q ss_pred -CCceEEEeccCCC--c-eEEEEEcCCCCceeEEEecCCCeEEEEeC---CCCeEEEEecCCC--ceEEEEcCCCCCCCC
Q psy8875 611 -QNAKIERAGMDGS--H-RNMVIVSDIKWPNGLTLDLVQRRLYWVDA---KLNEISSCDYNGG--NRRLVLYSPQTLSHP 681 (734)
Q Consensus 611 -~~~~I~~~~ldG~--~-~~~lv~~~l~~P~glavD~~~~~LYw~D~---~~~~I~~~~~dG~--~~~~i~~~~~~~~~P 681 (734)
....|+..++++. . .+.|.. ....-... +++.+++||+... ...+|+.+++++. ..+.++... -...
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~l 366 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIP-DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES--KDNL 366 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEEC-SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC--SSEE
T ss_pred CCcceEEEEECCCCCCcccEEecC-CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC--CCeE
Confidence 2458999888765 3 344432 22222222 3467888888753 3567999998873 445555322 1223
Q ss_pred eEEEEECCEEEEEeCC--CCceEEEeccCCCceEEE
Q psy8875 682 FSISTFEDWLYWSDWQ--QKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 682 ~gl~v~~~~lywtd~~--~~~v~~~~~~~G~~~~~l 715 (734)
.++++++++|+++-.. ..+|+.++. +|+..+.|
T Consensus 367 ~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l 401 (741)
T 1yr2_A 367 ESVGIAGNRLFASYIHDAKSQVLAFDL-DGKPAGAV 401 (741)
T ss_dssp EEEEEEBTEEEEEEEETTEEEEEEEET-TSCEEEEC
T ss_pred EEEEEECCEEEEEEEECCEEEEEEEeC-CCCceeec
Confidence 4677788888887643 335666664 45544444
No 306
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.33 E-value=0.047 Score=58.28 Aligned_cols=223 Identities=7% Similarity=-0.062 Sum_probs=118.0
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
...|+..++........+... ....+.+....+.++++-...+.|...++..+. ....+......+..|++.+.+. +
T Consensus 77 d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~ 153 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREIDQAHVSEITKLKFFPSGE-A 153 (420)
T ss_dssp TTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEETTSSSSCEEEEEECTTSS-E
T ss_pred CCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeecccccCccEEEEECCCCC-E
Confidence 344555555433222222222 334443333355555665667888888877432 2222223445677888886554 4
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---------
Q psy8875 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD--------- 632 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~--------- 632 (734)
.++-...+.|.+.++........+.........|++.|...+|+.... .+.|...++........+...
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL--DGTIRLWECGTGTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET--TSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC--CCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence 445555789999998654333333455667889999997666665553 355666665433322222211
Q ss_pred ---------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-CE-EEEEe
Q psy8875 633 ---------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DW-LYWSD 695 (734)
Q Consensus 633 ---------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~-lywtd 695 (734)
......+++++.+..| ++-...+.|...++........+.. .......+|++.. +. ++++-
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEE
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEE
Confidence 1222344555434444 4444567788888765544333321 1223345666632 22 44444
Q ss_pred CCCCceEEEeccCCCc
Q psy8875 696 WQQKAIYKANKFTGDN 711 (734)
Q Consensus 696 ~~~~~v~~~~~~~G~~ 711 (734)
...+.|...+..+++.
T Consensus 310 ~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 310 YENGMLAQWDLRSPEC 325 (420)
T ss_dssp ETTSEEEEEETTCTTS
T ss_pred eCCCeEEEEEcCCCcC
Confidence 4456676666666543
No 307
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.32 E-value=0.01 Score=61.78 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=99.5
Q ss_pred CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC----CCeEEEEeCCCCceEEEEcCCCCCceeEEEeC
Q psy8875 524 EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH----KNTIELANFEGTMRKVLVRSYLDEPRSLALNP 599 (734)
Q Consensus 524 ~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~----~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~ 599 (734)
...|+.++++++.. ..+ ..+..+++.+.++.|+++... ...|++.++++...+.+..... ..++++.|
T Consensus 42 ~~~l~~~d~~~~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNAR-RFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT
T ss_pred cceEEEEeCCCCce-EEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC
Confidence 34678888875443 222 345667888888888887543 3458999988766555543322 78889988
Q ss_pred CCCeEEEEecC-------------------------CCceEEEeccCCCce-EEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 600 IDGWMYWSDWG-------------------------QNAKIERAGMDGSHR-NMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 600 ~~g~LYwtd~~-------------------------~~~~I~~~~ldG~~~-~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
...+|+++... ....|++.++++... +.+.. . ....+++.+.+ .+|.+..
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEEC
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEec
Confidence 87788887521 135788888877655 44443 2 56778888655 5555543
Q ss_pred C--------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC-------CCceEEEe
Q psy8875 654 K--------LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ-------QKAIYKAN 705 (734)
Q Consensus 654 ~--------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~-------~~~v~~~~ 705 (734)
. ...|+.++ . ...+.+... .....++..+.+|+++... ...|+.++
T Consensus 190 ~~~~~~~~~~~~l~~~d-~-~~~~~l~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE-D-GKEEKMFEK----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CCSSCCSSCCEEEEEEE-T-TEEEEEEEE----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred ccccccccccccEEEeC-C-CceEEeccC----cceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 2 34688877 3 334444321 1222334456667665432 34677776
No 308
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.32 E-value=0.093 Score=53.54 Aligned_cols=163 Identities=12% Similarity=0.005 Sum_probs=88.8
Q ss_pred CCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc--------eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCe
Q psy8875 501 STKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE--------RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNT 570 (734)
Q Consensus 501 ~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~--------~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~ 570 (734)
....+.+|+|.+. .+.++++-...+.|...++..+.. ....+......+..|++.+.. +.++++-...+.
T Consensus 56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 135 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence 4557889999875 355666666678888888775431 122233334556788888662 444445445688
Q ss_pred EEEEeCCCCce-EE------EE------cCCCCCceeEEEeCC---CCeEEEEecCCCceEEEeccCCCceEEEEE--cC
Q psy8875 571 IELANFEGTMR-KV------LV------RSYLDEPRSLALNPI---DGWMYWSDWGQNAKIERAGMDGSHRNMVIV--SD 632 (734)
Q Consensus 571 I~~~~ldG~~~-~~------l~------~~~l~~P~~iavD~~---~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~~ 632 (734)
|.+.++..... .. +. .........+++.|. ..+|..+. . .+.|............+.. ..
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-L-EQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-T-TEEEEEEECTTSCEEEEEECCCC
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-C-CCcEEEEccCCCceeeeeecCCC
Confidence 98888754321 00 00 023445678888876 44444444 2 2334332222222222221 22
Q ss_pred CCCceeEEEecCCC---eEEEEeCCCCeEEEEecCC
Q psy8875 633 IKWPNGLTLDLVQR---RLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 633 l~~P~glavD~~~~---~LYw~D~~~~~I~~~~~dG 665 (734)
......|++.+.+. .++++-...+.|...++..
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 33457888876552 4555555556676666553
No 309
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.08 Score=53.51 Aligned_cols=221 Identities=10% Similarity=0.017 Sum_probs=118.4
Q ss_pred cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--eEEEEeCCCCCccceeeeccCC
Q psy8875 483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--RTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~~~~~~~~~~~p~glAvD~~~~ 559 (734)
..|+..++........ ......+.+++|.+....|+.. ...+.|...++..... ....+......+..|+++ +
T Consensus 39 g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 114 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG-GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---D 114 (313)
T ss_dssp SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---T
T ss_pred CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe-cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---C
Confidence 4466556655443333 3345678899999866555544 4567777776654321 122222223344555553 4
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCcee
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNG 638 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~g 638 (734)
.++++-...+.|.+.+ .+.... .+.........+++.+..+.++++-. ..+.|...+. +. ....+.. .......
T Consensus 115 ~~l~~~~~d~~i~~~d-~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~-~~-~~~~~~~~~~~~i~~ 189 (313)
T 3odt_A 115 GVVISGSWDKTAKVWK-EGSLVY-NLQAHNASVWDAKVVSFSENKFLTAS-ADKTIKLWQN-DK-VIKTFSGIHNDVVRH 189 (313)
T ss_dssp TEEEEEETTSEEEEEE-TTEEEE-EEECCSSCEEEEEEEETTTTEEEEEE-TTSCEEEEET-TE-EEEEECSSCSSCEEE
T ss_pred CEEEEEeCCCCEEEEc-CCcEEE-ecccCCCceeEEEEccCCCCEEEEEE-CCCCEEEEec-Cc-eEEEEeccCcccEEE
Confidence 4555555578888888 333332 23344556778888774444444432 2355665552 11 1222222 3445677
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 639 LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+++.+. ++ +++-...+.|...++........+.. ......+|++..+..+++-...+.|...+..+++.+..+.
T Consensus 190 ~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 190 LAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp EEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred EEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEe
Confidence 888744 44 44555667888888765444333332 2334566777433233444445677777776776665554
No 310
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.29 E-value=0.22 Score=52.94 Aligned_cols=204 Identities=9% Similarity=0.035 Sum_probs=112.8
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l 584 (734)
+.+++|.+....| .+-...+.|+..++..+.. ...+......+..|++.+.+..| ++-...+.|.+.++........
T Consensus 126 v~~v~~s~dg~~l-~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 126 IRSVCFSPDGKFL-ATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp EEEEEECTTSSEE-EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEE-EEEcCCCeEEEEECCCCcE-EEEEccCCCCEEEEEEcCCCCEE-EEecCCCcEEEEECCCCeeEEE
Confidence 6789998755544 4555678888888874432 22333334456778887665555 4555578899999876544333
Q ss_pred EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-------cCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-------SDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 585 ~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-------~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
+ ........+++.|..+.++.+-. ..+.|...++........+. ........|++.+.+..|+.+ ...+.
T Consensus 203 ~-~~~~~v~~~~~~~~~~~~l~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~ 279 (393)
T 1erj_A 203 L-SIEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRS 279 (393)
T ss_dssp E-ECSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSE
T ss_pred E-EcCCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCE
Confidence 3 23345788999886676666543 23566666654332221121 122345678888666655544 44567
Q ss_pred EEEEecCCCce------------EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 658 ISSCDYNGGNR------------RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 658 I~~~~~dG~~~------------~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
|...++..... ...+. .......++++. .+.++++-...+.|...+..+|+.+..+.
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEEEC---------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 77777653211 11111 111223455552 33344444445666666766666655553
No 311
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.26 E-value=0.079 Score=59.57 Aligned_cols=207 Identities=8% Similarity=-0.094 Sum_probs=120.0
Q ss_pred CCcceEEEeeeccCCeEEEEEeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
....+.+++|.+....|+...... +.|+..+ .+. ....+......+..+++.+.+..++++-...+.|.+.++.
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC
Confidence 345678999998777777665432 3455444 222 2222333445677888887766577777777899999987
Q ss_pred CCceEEEEcCCCC---CceeEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEE-E---cCCCCceeEEEecCCCeEE
Q psy8875 578 GTMRKVLVRSYLD---EPRSLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVI-V---SDIKWPNGLTLDLVQRRLY 649 (734)
Q Consensus 578 G~~~~~l~~~~l~---~P~~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv-~---~~l~~P~glavD~~~~~LY 649 (734)
.......+..... ....+++.|. ..+|+.... .+.|...++........+ . ........|++. .+.++
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l 267 (615)
T 1pgu_A 192 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKF 267 (615)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEE
T ss_pred CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--CCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEE
Confidence 6554444444444 6789999997 555555542 467777776544333333 2 233445778886 44444
Q ss_pred EEeCCCCeEEEEecCCCceEEEEcCC-C-CCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 650 WVDAKLNEISSCDYNGGNRRLVLYSP-Q-TLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 650 w~D~~~~~I~~~~~dG~~~~~i~~~~-~-~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++-...+.|...++........+... . ......++.+ .+++|+... ..+.|...+..+++.+..+
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE-TTSCEEEEETTEEEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE-CCCCEEEEECCCCcEEEEE
Confidence 45445678888887744333333221 1 1123445555 444444444 4466776666555544444
No 312
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.26 E-value=0.068 Score=61.89 Aligned_cols=224 Identities=8% Similarity=0.009 Sum_probs=131.4
Q ss_pred ceEEeecCCCceEEEecCC-------cceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCc--c
Q psy8875 484 DIRKISLDHHEMTAIVNST-------KSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIA--D 550 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~-------~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p--~ 550 (734)
.|+++...+.....|+... ....+++|.+..++|.++-... ..|+..++.+|.... ...+... .
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~ 171 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYA 171 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCccccc
Confidence 3677776666666664321 1467788998888777664433 469999998654320 1112222 5
Q ss_pred ceeeeccCCcEEEEeCCC------------CeEEEEeCCCCc--eEEEEcCC--CCCceeEEEeCCCCeEEEEecCC--C
Q psy8875 551 GLAVDWIYSHIYWTDAHK------------NTIELANFEGTM--RKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQ--N 612 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~------------~~I~~~~ldG~~--~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~--~ 612 (734)
+++..+.++.||++.... ..|++.++.+.. .+.+.... .....++++.|...+|+++.... .
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 251 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE 251 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence 677776777888886532 349999987654 23343321 12446889999888888776432 3
Q ss_pred ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC---CCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEE
Q psy8875 613 AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA---KLNEISSCDYNGGNR---RLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 613 ~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~---~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v 686 (734)
..|+..+..+...+.|... ......... +.++ ||+... ...+|+++++++... +.++... ......++++
T Consensus 252 ~~l~~~~~~~~~~~~l~~~-~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~ 327 (695)
T 2bkl_A 252 NDVYWKRPGEKDFRLLVKG-VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSI 327 (695)
T ss_dssp EEEEEECTTCSSCEEEEEC-SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEE
T ss_pred eEEEEEcCCCCceEEeecC-CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEE
Confidence 5788877655444444432 222222322 4455 777643 457899999876652 5555321 1112356777
Q ss_pred ECCEEEEEeCC--CCceEEEeccCCCceEEE
Q psy8875 687 FEDWLYWSDWQ--QKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 687 ~~~~lywtd~~--~~~v~~~~~~~G~~~~~l 715 (734)
++++|+++-.. ..+|+.++. +|+..+.|
T Consensus 328 ~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l 357 (695)
T 2bkl_A 328 VGGHLSLEYLKDATSEVRVATL-KGKPVRTV 357 (695)
T ss_dssp ETTEEEEEEEETTEEEEEEEET-TCCEEEEC
T ss_pred ECCEEEEEEEECCEEEEEEEeC-CCCeeEEe
Confidence 88988887643 345666654 45544444
No 313
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.24 E-value=0.01 Score=69.00 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=106.4
Q ss_pred cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeC------------CCcEEEEecCCCCce-EEEEeCCCC-
Q psy8875 483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDIS------------EKKIYKAPIDEGSER-TVVIEEDKT- 547 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~------------~~~I~~~~l~~g~~~-~~~~~~~~~- 547 (734)
..|+.+++.+.+.... +... ...+++|. ..+.||++... ..+|++..+..+... +.+.. ...
T Consensus 155 ~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~-~~~~ 231 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG-AIPA 231 (693)
T ss_dssp EEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES-CSGG
T ss_pred EEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe-cCCC
Confidence 4577778877664332 1111 11345676 67788887543 245888887644332 33333 222
Q ss_pred C---ccceeeeccCCcEEEEeCC---CCeEEEEeCCCC--ceEEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEEE
Q psy8875 548 I---ADGLAVDWIYSHIYWTDAH---KNTIELANFEGT--MRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIER 617 (734)
Q Consensus 548 ~---p~glAvD~~~~~lY~td~~---~~~I~~~~ldG~--~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~ 617 (734)
. ..++++.+.++.|+++... ...|++.++++. ..+.|... ...-.. .+++..+.||++... ...+|++
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVS-LVDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEE-EEEEETTEEEEEECTTCTTCEEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEE-EEeccCCEEEEEECCCCCCCEEEE
Confidence 1 2466777777778776542 358999998654 33344422 221122 256667888877543 2479999
Q ss_pred eccCCCce---EEEEEcCCCCceeEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEE
Q psy8875 618 AGMDGSHR---NMVIVSDIKWPNGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLV 671 (734)
Q Consensus 618 ~~ldG~~~---~~lv~~~l~~P~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i 671 (734)
+++++... +.++...-... .+++.+++|+++... ..+|+.++++|...+.+
T Consensus 310 ~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREV 365 (693)
T ss_dssp EETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred EeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEe
Confidence 99987654 55554332222 555568888887543 34789999998766555
No 314
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=56.92 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=42.2
Q ss_pred cccccccCCCCCc--CccccCCCcceee-cCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeCC
Q psy8875 388 GVDECAKDNGGCL--HKCVDLPVGYMCE-CNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDP 462 (734)
Q Consensus 388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~-C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~ 462 (734)
+||||...+..|. +.|+|++++|+|. +..||.+..++..+.. + .+ .+...+.|++||.++.
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~~~--~-------~~-----~~~~~~~C~~Gy~~~~ 65 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPP--P-------VP-----PAQHPNPCPPGYEPDD 65 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSCCC--S-------SC-----SCSSCCCSCTTEEEEC
T ss_pred ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCcccc--c-------cc-----cCccccCCCCCeeeCC
Confidence 5789987666785 4899999999998 5568987766654321 1 11 1222458999999874
No 315
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.20 E-value=0.073 Score=55.82 Aligned_cols=160 Identities=12% Similarity=0.046 Sum_probs=99.9
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE---EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV---IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~---~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
..+.+|+|.+. ++|. +-...+.|+..++..+....+. ...-...+..|++.+.++ +.++-...+.|.+.++...
T Consensus 83 ~~v~~~~~s~d-~~l~-~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 83 AGVADLTWVGE-RGIL-VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp SCEEEEEEETT-TEEE-EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT
T ss_pred CCEEEEEEeCC-CeEE-EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCC
Confidence 34678888864 4443 5556788888888755443222 122234567888886544 4455555688999998765
Q ss_pred ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEE-EcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVI-VSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv-~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
.....+.........+++.+....++.+-. ..+.|...++.... ...+. ......+..+++.+.+++++.+-...+.
T Consensus 160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCS-EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEE-TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred cEEEEEcCcCCceEEEEecCCCCCceeeec-cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 554445455667789999887777777653 23566666664333 22221 1223346788888777777777666778
Q ss_pred EEEEecCCC
Q psy8875 658 ISSCDYNGG 666 (734)
Q Consensus 658 I~~~~~dG~ 666 (734)
|...++...
T Consensus 239 v~~wd~~~~ 247 (344)
T 4gqb_B 239 VSLVDTKST 247 (344)
T ss_dssp EEEEESCC-
T ss_pred EEEEECCCC
Confidence 888887543
No 316
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=97.17 E-value=0.00039 Score=75.37 Aligned_cols=117 Identities=23% Similarity=0.579 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCC-C----CCCCCCCcee
Q psy8875 159 DCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAG-S----KPCRNSTMFR 233 (734)
Q Consensus 159 dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~-~----~~C~~~~~~~ 233 (734)
.|.+|+.+.. |.. .| .+|.+.++|.+ ..+.|.|++||.|..|+..|.+.. . .+|. ..-.
T Consensus 188 ~C~~g~~G~~--------C~~---~C-~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~--~~~~ 251 (423)
T 2gy5_A 188 RCEAQKWGPE--------CNH---LC-TACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCS--GQEG 251 (423)
T ss_dssp SSCTTEESTT--------SCE---EC-CCCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECC--STTT
T ss_pred cCCCCCCCCC--------CCC---CC-CCCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCC--CCCC
Confidence 4777665544 432 23 25777777765 467899999999999987654310 0 1232 1122
Q ss_pred eC-CCceecCcCCCCCCCCCCCCCCCCCCCCCCCCCce--------ecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875 234 CT-GGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEF--------TCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ 300 (734)
Q Consensus 234 C~-~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~~~~~--------~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~ 300 (734)
|. ++.|.+..+.|. |..|+.+.+|+..|.++.+ .|.++ +|++... | .|..|+.+.+|+
T Consensus 252 C~~~g~C~~~~~~C~----C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~-C----~C~~G~~G~~Ce 319 (423)
T 2gy5_A 252 CKSYVFCLPDPYGCS----CATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-C----LCSPGWQGLQCE 319 (423)
T ss_dssp TTTCCEEETTTTEEE----CCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTTE-E----ECCTTCBSTTSC
T ss_pred CCCCCEECCCCCeEE----eCCCcccccccCccCCCCcCCcccccccCCCCCEecCCCc-e----ECCCCCcCCCCc
Confidence 43 367888888887 9999998888755654422 34444 5655432 5 566666665555
No 317
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.16 E-value=0.067 Score=55.32 Aligned_cols=179 Identities=10% Similarity=-0.002 Sum_probs=99.2
Q ss_pred ccceEEeecCCCc--eEEEecCCcceEEEee------eccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCc
Q psy8875 482 KHDIRKISLDHHE--MTAIVNSTKSATAIDF------VFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIA 549 (734)
Q Consensus 482 ~~~I~~i~l~~~~--~~~l~~~~~~~~~i~~------d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p 549 (734)
...|+..++.... ...+......+.++++ .+. +.++++-...+.|...++..+......+... ....
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 4456666665443 3333334455677754 343 4444555567888888887554222222211 1133
Q ss_pred ccee----eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeC---CCCeEEEEecCCCceEEEeccCC
Q psy8875 550 DGLA----VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP---IDGWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 550 ~glA----vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~---~~g~LYwtd~~~~~~I~~~~ldG 622 (734)
..++ +.+ .++++++-...+.|.+.++......... .....+..+++.| ...+|+.... .+.|...++..
T Consensus 168 ~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~ 243 (357)
T 3i2n_A 168 WTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWET-NIKNGVCSLEFDRKDISMNKLVATSL--EGKFHVFDMRT 243 (357)
T ss_dssp EEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEESCSSSSCCEEEEEES--TTEEEEEEEEE
T ss_pred EEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeec-CCCCceEEEEcCCCCCCCCEEEEECC--CCeEEEEeCcC
Confidence 4455 333 4455555555689999999876654333 3345788999998 5556665542 35665555432
Q ss_pred Cc-eEEE----EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 623 SH-RNMV----IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 623 ~~-~~~l----v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
.. ...+ ..........|++.+.+..++++-...+.|...++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 21 1111 1134455678888865554666666667777777653
No 318
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=97.15 E-value=0.0027 Score=70.24 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=77.8
Q ss_pred CCCCccceeeeccCCcEEEEeCC---------------------CCeEEEEeCCCCc-------eEEEE-c---------
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAH---------------------KNTIELANFEGTM-------RKVLV-R--------- 586 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~---------------------~~~I~~~~ldG~~-------~~~l~-~--------- 586 (734)
.+..|++|++++.++.||++-.. .+.|++...++.. -.+++ .
T Consensus 382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~ 461 (592)
T 4a9v_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence 45679999999999999999543 2678888775421 12222 1
Q ss_pred -----------CCCCCceeEEEeCCCCeEEE-EecCC----------CceEEEeccCCCceEEEEEc-CCCCceeEEEec
Q psy8875 587 -----------SYLDEPRSLALNPIDGWMYW-SDWGQ----------NAKIERAGMDGSHRNMVIVS-DIKWPNGLTLDL 643 (734)
Q Consensus 587 -----------~~l~~P~~iavD~~~g~LYw-td~~~----------~~~I~~~~ldG~~~~~lv~~-~l~~P~glavD~ 643 (734)
..+..|.+|++|+ .|.||+ ||.+. +..+++++.+....+.++.. ....|+||++.+
T Consensus 462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC
Confidence 1368999999997 588999 88431 23789988854444445543 356799999999
Q ss_pred CCCeEEEEeCC
Q psy8875 644 VQRRLYWVDAK 654 (734)
Q Consensus 644 ~~~~LYw~D~~ 654 (734)
...+||++-..
T Consensus 541 D~ktLfV~vQH 551 (592)
T 4a9v_A 541 DQKTLFVGIQH 551 (592)
T ss_dssp TSSEEEEEEES
T ss_pred CCCEEEEEEeC
Confidence 99999999643
No 319
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.14 E-value=0.024 Score=58.83 Aligned_cols=202 Identities=7% Similarity=-0.108 Sum_probs=108.0
Q ss_pred CcceEEEeeeccCCeEEEEEeC---CCcEEEEecCCCCceEEEEeCCCCCccceeeeccC--CcEEEEeCCCCeEEEEeC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY--SHIYWTDAHKNTIELANF 576 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~--~~lY~td~~~~~I~~~~l 576 (734)
...+.+|+|.+....+..+... .+.|+..++..+.............+..+++.+.. +.++++-...+.|.+.++
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 3467788888866666665543 67788878775543333222233456777877663 455555555788999998
Q ss_pred CCCc-eEEEEcCCCCCceeEE------EeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCC----CCceeEE----
Q psy8875 577 EGTM-RKVLVRSYLDEPRSLA------LNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDI----KWPNGLT---- 640 (734)
Q Consensus 577 dG~~-~~~l~~~~l~~P~~ia------vD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l----~~P~gla---- 640 (734)
.... ....+.........++ +.+...+|+.... .+.|...++.... ....+.... .....++
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR--DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET--TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC--CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 7554 3333334444556664 4455555555542 4567777765443 222221111 1234455
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE----CCEEEEEeCCCCceEEEeccCC
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF----EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~----~~~lywtd~~~~~v~~~~~~~G 709 (734)
+.+ .+.++++-...+.|...++.......... .......|++. .+.++++-...+.|...+..++
T Consensus 176 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 176 YNQ-EERVVCAGYDNGDIKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CC--CCCEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred cCC-CCCEEEEEccCCeEEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 333 34444444456788888887665543332 12334566663 3444444444455555554443
No 320
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.22 Score=50.13 Aligned_cols=199 Identities=11% Similarity=0.029 Sum_probs=114.6
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+.+++++ .+ ++++-...+.|+..+ . +.. ...+......+..+++.+..+.++++-...+.|.+.+.. ..
T Consensus 103 ~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d-~-~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 175 (313)
T 3odt_A 103 HQGNVCSLSFQ--DG-VVISGSWDKTAKVWK-E-GSL-VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-KV 175 (313)
T ss_dssp CSSCEEEEEEE--TT-EEEEEETTSEEEEEE-T-TEE-EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-EE
T ss_pred cccCEEEEEec--CC-EEEEEeCCCCEEEEc-C-CcE-EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-ce
Confidence 44566778774 34 444545667777766 2 222 223333444566777776456666666667888888832 22
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
...+..........+++.|.. .|+... ..+.|...++........+.........|++.+.+ +|+ +-...+.|..
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~~dg~v~i 250 (313)
T 3odt_A 176 IKTFSGIHNDVVRHLAVVDDG-HFISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-SCGEDRTVRI 250 (313)
T ss_dssp EEEECSSCSSCEEEEEEEETT-EEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-EEETTSEEEE
T ss_pred EEEEeccCcccEEEEEEcCCC-eEEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-EEecCCEEEE
Confidence 223332255667889998754 444443 34678887776444443444445567889997655 544 4445678998
Q ss_pred EecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 661 CDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 661 ~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
.++........+.. ......+|++. .+.|+ +-...+.|...+..+++....
T Consensus 251 wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 251 WSKENGSLKQVITL--PAISIWSVDCMSNGDII-VGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp ECTTTCCEEEEEEC--SSSCEEEEEECTTSCEE-EEETTSCEEEEESCGGGCCC-
T ss_pred EECCCCceeEEEec--cCceEEEEEEccCCCEE-EEeCCCcEEEEeCCCCceeeh
Confidence 88765554444432 12344567774 34444 444456777777666654433
No 321
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=97.13 E-value=0.00019 Score=67.77 Aligned_cols=43 Identities=37% Similarity=0.894 Sum_probs=37.7
Q ss_pred cccccccCCCC---CcCccccCCCcceeecCCCcEecCCCCccccc
Q psy8875 388 GVDECAKDNGG---CLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430 (734)
Q Consensus 388 ~~~eC~~~~~~---C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~ 430 (734)
+++||...++. |++.|.|++++|+|.|++||.|..++++|+++
T Consensus 123 di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp ECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred ccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence 67888866554 99999999999999999999999999999764
No 322
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.08 E-value=0.021 Score=60.27 Aligned_cols=181 Identities=10% Similarity=0.012 Sum_probs=111.3
Q ss_pred ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCC
Q psy8875 482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~ 559 (734)
...|+..++.......... ....+.+|+|.+..+.++.+-...+.|+..++..+.....+. ......+..|++.+..+
T Consensus 160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 3456666665444333332 345678899987777777777778888888876544322221 11223456788877778
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gl 639 (734)
+++.+-...+.|.+.++........+.........|++.|..+.+..+-. ..+.|...+++.......+ ..-...++|
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~~~~~-~H~~~V~~v 317 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEVFRDL-SHRDFVTGV 317 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence 88877666788999988654433334344556789999887665555432 3466777776644322221 223456788
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 640 TLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 640 avD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
++.+..+.++.+-...+.|...++.
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECC
Confidence 8876566666665556666666654
No 323
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=97.07 E-value=0.00039 Score=75.42 Aligned_cols=81 Identities=23% Similarity=0.543 Sum_probs=57.0
Q ss_pred CccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q psy8875 200 KISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSD----------- 268 (734)
Q Consensus 200 ~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~~~----------- 268 (734)
.+.|.|++||.|..|+..|. +|. ++|+|++.+..|. |..|+.+.+|+..|.+.
T Consensus 184 ~~~c~C~~g~~G~~C~~~C~-----~C~-------~~G~C~~~~g~C~----C~~G~~G~~Ce~~C~~g~~g~~C~~~C~ 247 (423)
T 2gy5_A 184 LIVRRCEAQKWGPECNHLCT-----ACM-------NNGVCHEDTGECI----CPPGFMGRTCEKACELHTFGRTCKERCS 247 (423)
T ss_dssp EEECSSCTTEESTTSCEECC-----CCC-------TTCEECTTTCCEE----CCTTEESTTSCEECCTTEESTTSCEECC
T ss_pred ccCCcCCCCCCCCCCCCCCC-----CCC-------CCCEEECCCCcEe----CCCCccCCCcccccCCCCCCCCcCccCC
Confidence 34689999999988876542 565 3577777677777 99999998887444332
Q ss_pred -ceecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875 269 -EFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ 300 (734)
Q Consensus 269 -~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~ 300 (734)
.-.|.++ .|.+..+.| .|..|+.+.+|+
T Consensus 248 ~~~~C~~~g~C~~~~~~C----~C~~G~~G~~C~ 277 (423)
T 2gy5_A 248 GQEGCKSYVFCLPDPYGC----SCATGWKGLQCN 277 (423)
T ss_dssp STTTTTTCCEEETTTTEE----ECCBTCBSGGGC
T ss_pred CCCCCCCCCEECCCCCeE----EeCCCccccccc
Confidence 1124443 676677777 788888887776
No 324
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.06 E-value=0.00037 Score=79.54 Aligned_cols=127 Identities=22% Similarity=0.488 Sum_probs=82.6
Q ss_pred ecC-CCceecCcCccCCCCCCCCCCccccccc-----------CcccCC--ceeccCCCCeeeCCCCCCCCCCCCC----
Q psy8875 61 RCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQK-----------RICGQE--EFTCRSSPGECVPLTWMCDDNPDCS---- 122 (734)
Q Consensus 61 ~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~~-----------~~C~~~--~~~C~~~~~~Ci~~~~~Cdg~~dC~---- 122 (734)
.|. +|.|+ .|...|..|+.+.+|+. ..|... ...|.++ |.|+. |...|.
T Consensus 436 ~Cs~~G~C~------~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~-G~C~~------G~C~C~~~~~ 502 (687)
T 3k6s_B 436 LCHGKGFLE------CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL-GDCVC------GQCLCHTSDV 502 (687)
T ss_dssp TGGGSEEES------SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSS-EEEET------TEEEECCCCS
T ss_pred CCCCCCEEe------CCEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCC-CEEeC------CEEEcCCCCC
Confidence 454 45666 35668899999888862 136542 2358776 88983 566888
Q ss_pred --CCCCcCCCC--CCCcccc-cCcCCC---CceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCC----CcccC
Q psy8875 123 --DGSDEKSCK--NRTCQAS-EFRCGN---NRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS----HLCLP 190 (734)
Q Consensus 123 --dg~de~~C~--~~~C~~~-~f~C~~---g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~----~~C~~ 190 (734)
.|+.+..|+ ...|... ...|.+ |+|+. |...|..|+.+.. |+ |......|. ..|.+
T Consensus 503 ~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~------g~C~C~~G~~G~~--Ce----c~~~~~~C~~~~g~~Cs~ 570 (687)
T 3k6s_B 503 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC------GKCRCHPGFEGSA--CQ----CERTTEGCLNPRRVECSG 570 (687)
T ss_dssp TTCCEESTTSCEESSCSCEETTEETSHHHHEEEET------TEEEECTTCCSTT--SC----SCCSSCTTBCTTCSBTSS
T ss_pred CCCCccccccccccccccCCCCcCcCCCCCCeEEC------CEEEcCCCCcCCC--Cc----cCCCCCCCCCCCCCCCCC
Confidence 888888886 4567643 234663 67773 4566888887766 43 112223442 25777
Q ss_pred CCcccCCCCCccccCCCCCccCCCcc
Q psy8875 191 APQINAHSPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 191 ~~~~~~~~~~~~C~C~~G~~~~~~~~ 216 (734)
.+.|.. ..|.|++||.|..|+.
T Consensus 571 ~G~C~~----g~C~C~~Gy~G~~Ce~ 592 (687)
T 3k6s_B 571 RGRCRC----NVCECHSGYQLPLCQE 592 (687)
T ss_dssp SCCBCS----SCBCCSTTCCTTTTCC
T ss_pred CCcCCC----CEEECCCCCcCCCCCC
Confidence 777764 4799999999988775
No 325
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.05 E-value=0.14 Score=52.12 Aligned_cols=204 Identities=10% Similarity=-0.033 Sum_probs=109.3
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce---EEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER---TVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~---~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ld 577 (734)
...+..|+|++....| ++-...+.|+..++..+... ...+......+..|++.+. .+.++++-...+.|.+.++.
T Consensus 11 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHV-ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp SSCEEEEEECSSSSEE-EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred ccceeEEEEcCCCCEE-EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 3467788888755444 44456677877777644321 1122233445667777654 35666666667889988886
Q ss_pred CCc---------eEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCc-eEEE-----EE-------cCC
Q psy8875 578 GTM---------RKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSH-RNMV-----IV-------SDI 633 (734)
Q Consensus 578 G~~---------~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~-~~~l-----v~-------~~l 633 (734)
... ....+........+|++.|. ..+|+.+.. .+.|...++.... ...+ +. ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN--DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC--CCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 542 22233344567789999987 555555542 3566666653322 1100 00 122
Q ss_pred CCceeEEEecC---CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECC-----EEEEEeCCCCceEEEe
Q psy8875 634 KWPNGLTLDLV---QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFED-----WLYWSDWQQKAIYKAN 705 (734)
Q Consensus 634 ~~P~glavD~~---~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~-----~lywtd~~~~~v~~~~ 705 (734)
.....+++.+. ...|..+.. .+.|............+...........+|++..+ .++++-...+.|...+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSAL-EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEET-TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecC-CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 34456777654 444544443 34443333333333333322222233456777443 5666666666676666
Q ss_pred ccCC
Q psy8875 706 KFTG 709 (734)
Q Consensus 706 ~~~G 709 (734)
..++
T Consensus 247 ~~~~ 250 (351)
T 3f3f_A 247 ITEK 250 (351)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 5554
No 326
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.03 E-value=0.51 Score=50.94 Aligned_cols=221 Identities=12% Similarity=0.042 Sum_probs=119.0
Q ss_pred ccceEEeecCCCceEEEec-CCcceEEEeeec-cCCeEEEEEeCCCcEEEEecCCCCceE--------------------
Q psy8875 482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVF-RTGMIFWSDISEKKIYKAPIDEGSERT-------------------- 539 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~-~~~~lyw~d~~~~~I~~~~l~~g~~~~-------------------- 539 (734)
+..|+..++.......... ....+.++++.+ ..+.++++-...+.|...++..+....
T Consensus 182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 3456666665444333333 445667788875 244566666667788877776443211
Q ss_pred --EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875 540 --VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER 617 (734)
Q Consensus 540 --~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~ 617 (734)
..+......+ .++.+..+ +.++-...+.|.+.++........+.........++++|...+|+.... .+.|..
T Consensus 262 ~~~~~~~~~~~v--~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~v 336 (464)
T 3v7d_B 262 FVGVLRGHMASV--RTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--DTTIRI 336 (464)
T ss_dssp EEEEECCCSSCE--EEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET--TSCEEE
T ss_pred EEEEccCccceE--EEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEE
Confidence 1111111122 33443344 4444445688999998765554445455667889999997666666553 467777
Q ss_pred eccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC
Q psy8875 618 AGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697 (734)
Q Consensus 618 ~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~ 697 (734)
.++........+.........|+++ ..+| ++-...+.|...++....+...... ........+...+..|....
T Consensus 337 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-- 410 (464)
T 3v7d_B 337 WDLENGELMYTLQGHTALVGLLRLS--DKFL-VSAAADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGS-- 410 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEC--SSEE-EEEETTSEEEEEETTTCCEEEEEEC-TTCCCEEEEEECSSEEEEEE--
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEc--CCEE-EEEeCCCcEEEEECCCCceeeeecC-CCCccEEEEEeCCCEEEEec--
Confidence 7775443333333334445667764 4444 4444567888888876554443321 11111122222333333333
Q ss_pred CCceEEEeccCCCceE
Q psy8875 698 QKAIYKANKFTGDNLT 713 (734)
Q Consensus 698 ~~~v~~~~~~~G~~~~ 713 (734)
.+.|...+..+|+.+.
T Consensus 411 dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp TTEEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEe
Confidence 4566666666665443
No 327
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.03 E-value=0.5 Score=50.82 Aligned_cols=218 Identities=9% Similarity=0.028 Sum_probs=122.2
Q ss_pred ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++....... +......+.+++++ +.++++-...+.|+..++..+..... +......+..++++ +.
T Consensus 138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~---~~ 210 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHT-LYGHTSTVRCMHLH---EK 210 (445)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEE---TT
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEE-ECCCCCcEEEEEec---CC
Confidence 4456666665443332 22334566778876 33555666778898888875533322 22233345556654 34
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
.+++-...+.|.+.++........+.........++++ ..+|+.... .+.|...++........+.........|+
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAY--DFMVKVWDPETETCLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEET--TSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEcC--CCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence 45555567899999987555444444555566777773 344554442 35666666654332222222223344555
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+ .+..|+.+ ...+.|...++........+.. ......++++.++.|+... ..+.|...+..+++.+..+.
T Consensus 287 ~--~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 287 F--DGIHVVSG-SLDTSIRVWDVETGNCIHTLTG--HQSLTSGMELKDNILVSGN-ADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp E--CSSEEEEE-ETTSCEEEEETTTCCEEEEECC--CCSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEEEC
T ss_pred E--CCCEEEEE-eCCCeEEEEECCCCCEEEEEcC--CcccEEEEEEeCCEEEEEe-CCCeEEEEECCCCcEEEEEc
Confidence 5 35555444 4567888888765544333332 2334456677766555554 44677777777777666664
No 328
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.03 E-value=0.12 Score=54.48 Aligned_cols=227 Identities=8% Similarity=-0.005 Sum_probs=122.6
Q ss_pred ccceEEeecCCCceEEEecCCcceEEEeeeccC--CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRT--GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~--~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
+..|+..++..............+..+++.+.. +.++++-...+.|+..++..+.....+ ......+..|++.+.+.
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYD 199 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCT
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCC
Confidence 455666677665555444444556677776543 335666667788888888755444333 33345677899988777
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEE-EE---------------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKV-LV---------------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~-l~---------------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
.|+++-...+.|.+.++....... .+ ......+..+++.|...+|+.... .+.|...++...
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~ 277 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT--DNRMRLWNSSNG 277 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTC
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC--CCeEEEEECCCC
Confidence 777777777889998885433111 11 123345678999987666666553 356666666543
Q ss_pred ceEEEEEcC----CCCceeEEEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCC
Q psy8875 624 HRNMVIVSD----IKWPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQ 697 (734)
Q Consensus 624 ~~~~lv~~~----l~~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~ 697 (734)
......... ...+..+.+... ...+.++ ...+.|...++........+.. ......+|++. .+.++++-..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE-EETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTTTEEEEEET
T ss_pred ccceeccccccccccccceeEEecCCCceEEEE-ecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCCCEEEEECC
Confidence 322111110 011111222111 2223323 2346777777665544444432 23344567774 3445555555
Q ss_pred CCceEEEeccCCCceEE
Q psy8875 698 QKAIYKANKFTGDNLTA 714 (734)
Q Consensus 698 ~~~v~~~~~~~G~~~~~ 714 (734)
.+.|...+..+++.+..
T Consensus 355 dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 355 DCNILAWVPSLYEPVPD 371 (408)
T ss_dssp TSCEEEEEECC------
T ss_pred CCeEEEEeCCCCCccCC
Confidence 56777777666655443
No 329
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.02 E-value=0.31 Score=50.02 Aligned_cols=207 Identities=8% Similarity=-0.006 Sum_probs=113.9
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
...+.+|++.+..+.++++-...+.|+..++.+.... ...+......+..+++.+.+ .+.++-...+.|.+.++.
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVA 95 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECC
Confidence 3456778887766566677667777766665422211 11223334456678887554 444555557899999986
Q ss_pred CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC-----CCeEEEEe
Q psy8875 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV-----QRRLYWVD 652 (734)
Q Consensus 578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~-----~~~LYw~D 652 (734)
.......+.........++++|...+|+-... .+.|...++.+.....+. ........+++.+. .+.++++-
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--D~~i~vwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSR--DKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEET--TSCEEEEETTSCEEEEEC-CCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 55444444455567889999986555554442 356666667665443332 23334456666443 22344555
Q ss_pred CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 653 AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 653 ~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
...+.|...++........+.. ......+|++. .+.++++-...+.|...+..+++.+..
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 5567777777765443333321 12233456653 344444444445555555555544433
No 330
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.99 E-value=0.14 Score=54.89 Aligned_cols=163 Identities=11% Similarity=0.043 Sum_probs=90.2
Q ss_pred CCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEE-E------EcCCCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKV-L------VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER 617 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~-l------~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~ 617 (734)
...+..|++.+.+ +++++- ..+.|.+.++.. ..... + +.........++++|....++.+-. ..+.|..
T Consensus 177 ~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~i 253 (447)
T 3dw8_B 177 TYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRL 253 (447)
T ss_dssp SSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEE
T ss_pred CcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEE
Confidence 3456788888654 444454 578999999883 22222 2 1233456789999987634444432 2456766
Q ss_pred eccCCCce----EEEEEcCCC------------CceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCC
Q psy8875 618 AGMDGSHR----NMVIVSDIK------------WPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLS 679 (734)
Q Consensus 618 ~~ldG~~~----~~lv~~~l~------------~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~ 679 (734)
.++..... ...+..... ....|++.+.+..|..+.. +.|...++. +.....+.. ...+.
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~-~~~~~ 330 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQV-HEYLR 330 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEES-CGGGT
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeec-ccccc
Confidence 66654332 222322221 5678999876666665554 788888875 333333321 11111
Q ss_pred C-------------CeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 680 H-------------PFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 680 ~-------------P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
. .+.+++. .+.++++-...+.|+..+..+++.+.+
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence 1 2235663 333345555567777777766665543
No 331
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.98 E-value=0.047 Score=56.66 Aligned_cols=162 Identities=7% Similarity=0.006 Sum_probs=97.4
Q ss_pred CcceEEEeeecc---CCeEEEEEeCCCcEEEEecCCCCceEEEEe-C---CCCCccceeeeccC---CcEEEEeCCCCeE
Q psy8875 502 TKSATAIDFVFR---TGMIFWSDISEKKIYKAPIDEGSERTVVIE-E---DKTIADGLAVDWIY---SHIYWTDAHKNTI 571 (734)
Q Consensus 502 ~~~~~~i~~d~~---~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~---~~~~p~glAvD~~~---~~lY~td~~~~~I 571 (734)
...+.+|+|.+. ...++++-...+.|...++..+.....+.. . ....+..+++.+.. +.++++-...+.|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 346678888863 344444444455777777664433322221 1 12345677777653 3566666667899
Q ss_pred EEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE---EcCCCCceeEEEecCCCeE
Q psy8875 572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI---VSDIKWPNGLTLDLVQRRL 648 (734)
Q Consensus 572 ~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv---~~~l~~P~glavD~~~~~L 648 (734)
.+.++........+.........|++.|..+.++++-. ..+.|...++........+ .........|++++.+..|
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS-KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE-TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe-CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence 99998755544444456677899999984555555442 2467777777654443333 2334557788998766666
Q ss_pred EEEeCCCCeEEEEecCC
Q psy8875 649 YWVDAKLNEISSCDYNG 665 (734)
Q Consensus 649 Yw~D~~~~~I~~~~~dG 665 (734)
+.+. ..+.|...++..
T Consensus 177 ~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 177 MSCG-MDHSLKLWRINS 192 (366)
T ss_dssp EEEE-TTSCEEEEESCS
T ss_pred EEec-CCCCEEEEECCC
Confidence 5554 456788877664
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.98 E-value=0.067 Score=51.88 Aligned_cols=178 Identities=13% Similarity=0.033 Sum_probs=105.4
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCc-----e-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-------Cc
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSE-----R-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-------TM 580 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~-----~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-------~~ 580 (734)
+-+||.++.. +|+...+..+.. + +.+-..+......||+++ ++.||.+ ..+.+++.+... ..
T Consensus 4 ~~~l~~v~~d--~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD--KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT--EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC--cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccc
Confidence 3456666542 666665554331 1 222223467888999998 8999999 457899988743 22
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc--CCCc-----eEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM--DGSH-----RNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l--dG~~-----~~~lv~~~l~~P~glavD~~~~~LYw~D~ 653 (734)
.+.|-......-.+|.+|+ +|.||.+. .++|+|.+. ++.. ..+|....-..-..|+++ .++.||-+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~-~G~LYav~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~- 152 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDP-NGYLYAVS---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH- 152 (236)
T ss_dssp CEEEECSCGGGCSEEEECT-TSCEEEEE---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE-
T ss_pred ccEecccccccceEEEECC-CCCEEEeC---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe-
Confidence 3334333444467899996 79999994 378999876 3332 233433333444788888 688899888
Q ss_pred CCCeEEEEe-cCCC------ceEEEEcCCCCCCCCeE-EEE-ECCEEEEEeCCCCceEEEeccC
Q psy8875 654 KLNEISSCD-YNGG------NRRLVLYSPQTLSHPFS-IST-FEDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 654 ~~~~I~~~~-~dG~------~~~~i~~~~~~~~~P~g-l~v-~~~~lywtd~~~~~v~~~~~~~ 708 (734)
.++|++-. ..+. ...++... .-+-+- |.+ .++.||+.. .++|++...-+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~---g~~~yr~l~f~~~G~l~~v~--~g~~Y~~~~p~ 210 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQG---GWDTFKFLFFSSVGTLFGVQ--GGKFYEDYPPS 210 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESS---SGGGEEEEEECTTSCEEEEE--TTEEEEESCCC
T ss_pred -CCcEEecCCCCCCCcccccccceeccC---CcceEEEEEECCCCcEEEEe--CCeEEecCCcc
Confidence 45576543 2222 12223211 111122 222 467788888 66788775443
No 333
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=96.97 E-value=0.0019 Score=72.45 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=22.1
Q ss_pred CCccccCCCCCccCCCccccccCCCCCCC
Q psy8875 199 PKISCACPEGLKLLPDLLMCAEAGSKPCR 227 (734)
Q Consensus 199 ~~~~C~C~~G~~~~~~~~~~~~~~~~~C~ 227 (734)
..++|.|+.||.|..|+.-+......+|.
T Consensus 277 ~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~ 305 (525)
T 4aqs_A 277 VHGHCMCRHNTKGLNCELCMDFYHDLPWR 305 (525)
T ss_dssp CCCEECCCTTEESSSSCEECTTCCSSCCC
T ss_pred cCccccCcCCCcCCCCcCCCCccCCCccC
Confidence 56789999999999998766555554554
No 334
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=96.94 E-value=0.051 Score=63.50 Aligned_cols=80 Identities=10% Similarity=0.018 Sum_probs=52.7
Q ss_pred ceeEEEeCCCCeEE-EEe-cCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC------CCeEEEEec
Q psy8875 592 PRSLALNPIDGWMY-WSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK------LNEISSCDY 663 (734)
Q Consensus 592 P~~iavD~~~g~LY-wtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~------~~~I~~~~~ 663 (734)
+..+++.|....|+ |.. ......|+..+++|...+.|.........-+.+| +++||++... ...|+++++
T Consensus 321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEET
T ss_pred CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEEC
Confidence 45778888766665 553 3334789999999887766554433222223465 8899998654 358999999
Q ss_pred CCCceEEEEc
Q psy8875 664 NGGNRRLVLY 673 (734)
Q Consensus 664 dG~~~~~i~~ 673 (734)
+|...++.++
T Consensus 399 ~g~~~~~~lt 408 (740)
T 4a5s_A 399 IDYTKVTCLS 408 (740)
T ss_dssp TEEEEEEESS
T ss_pred CCCCcceeec
Confidence 9877654443
No 335
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.91 E-value=0.41 Score=53.95 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=49.7
Q ss_pred eeEEEecCCCeEEEEeC------------------------------------CCCeEEEEecC-CCceEEEEcCCCCCC
Q psy8875 637 NGLTLDLVQRRLYWVDA------------------------------------KLNEISSCDYN-GGNRRLVLYSPQTLS 679 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~------------------------------------~~~~I~~~~~d-G~~~~~i~~~~~~~~ 679 (734)
.++++|+.+++||+... ..+.|..+++. |+.+-.+..... .
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~ 466 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--A 466 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--C
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--c
Confidence 46899999999998742 23567777764 333322221111 1
Q ss_pred CCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875 680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGV 718 (734)
Q Consensus 680 ~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~ 718 (734)
....++..++.||+... .+.|+.++..+|+.+..+...
T Consensus 467 ~~~~~~t~gg~v~~g~~-dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYATL-DGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECS
T ss_pred cceeEEECCCEEEEEcC-CCeEEEEECCCCCEEEEEeCC
Confidence 11224456788888654 578999999999988776543
No 336
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=96.89 E-value=0.00091 Score=76.32 Aligned_cols=109 Identities=21% Similarity=0.514 Sum_probs=70.8
Q ss_pred cccCCCcccCCCCCccccCC------CCCccCCCccccccCCCCCCCCCCceeeC---CCceecCcCCCCCCCCCCCCCC
Q psy8875 187 LCLPAPQINAHSPKISCACP------EGLKLLPDLLMCAEAGSKPCRNSTMFRCT---GGMCIPSTWVCDGQNDCPDGVD 257 (734)
Q Consensus 187 ~C~~~~~~~~~~~~~~C~C~------~G~~~~~~~~~~~~~~~~~C~~~~~~~C~---~g~Ci~~~~~Cdg~~dC~dg~d 257 (734)
.|.+.+.|.. .+|.|+ +||.|..|+.... .|...+...|. +|+|+.. +|. |..|+.
T Consensus 483 ~Cs~~G~C~~----G~C~C~~~~~~~~G~~G~~Ce~~~~-----~C~~~~~~~C~~~~~G~C~~g--~C~----C~~G~~ 547 (687)
T 3k6s_B 483 ICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTI-----NCERYNGQVCGGPGRGLCFCG--KCR----CHPGFE 547 (687)
T ss_dssp GGGSSEEEET----TEEEECCCCSTTCCEESTTSCEESS-----CSCEETTEETSHHHHEEEETT--EEE----ECTTCC
T ss_pred cCCCCCEEeC----CEEEcCCCCCCCCCccccccccccc-----cccCCCCcCcCCCCCCeEECC--EEE----cCCCCc
Confidence 4667776663 389999 9999998874332 33311223343 3566532 344 999999
Q ss_pred CCCCC-----CCCCCC-ceecCCC-CeecCCcccCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCcccc
Q psy8875 258 EKKCH-----ETCRSD-EFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQP-VKCTAGQFTCQNLTACIP 319 (734)
Q Consensus 258 e~~C~-----~~C~~~-~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~-~~C~~~~~~C~~~~~Ci~ 319 (734)
+..|+ ..|... ...|.++ +|+. .+| .|..|+.+..|+. ..|. ..|.+++.|+.
T Consensus 548 G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~--g~C----~C~~Gy~G~~Ce~c~~C~---~~C~~~g~Cv~ 608 (687)
T 3k6s_B 548 GSACQCERTTEGCLNPRRVECSGRGRCRC--NVC----ECHSGYQLPLCQECPGCP---SPCGKYISCAE 608 (687)
T ss_dssp STTSCSCCSSCTTBCTTCSBTSSSCCBCS--SCB----CCSTTCCTTTTCCCTTSC---CCCTTTHHHHT
T ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcCCC--CEE----ECCCCCcCCCCCCCCCCC---cccCCCCCCCc
Confidence 99996 356442 2357654 8876 456 8999999999985 3453 26777666663
No 337
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=96.89 E-value=0.41 Score=54.29 Aligned_cols=235 Identities=10% Similarity=-0.020 Sum_probs=129.9
Q ss_pred eeeeeeccceEEeecCC-CceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCcccee
Q psy8875 476 SLLFARKHDIRKISLDH-HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLA 553 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~-~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glA 553 (734)
.|+++....|+..++.. .....+......+..++|.|... +..+-...+.|+..++..+... ...+......+..|+
T Consensus 32 ~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~ 110 (611)
T 1nr0_A 32 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 110 (611)
T ss_dssp EEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEE
Confidence 44555555666666653 33334434455678899998554 4445456777887777533332 222332334577899
Q ss_pred eeccCCcEEEEeCCC---CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875 554 VDWIYSHIYWTDAHK---NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV 630 (734)
Q Consensus 554 vD~~~~~lY~td~~~---~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~ 630 (734)
+++.++.|..+.... ++|...+. |..... +.........+++.|...+++.+-. ..+.|...++........+.
T Consensus 111 fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s-~D~~v~lwd~~~~~~~~~l~ 187 (611)
T 1nr0_A 111 WDSESKRIAAVGEGRERFGHVFLFDT-GTSNGN-LTGQARAMNSVDFKPSRPFRIISGS-DDNTVAIFEGPPFKFKSTFG 187 (611)
T ss_dssp ECTTSCEEEEEECCSSCSEEEEETTT-CCBCBC-CCCCSSCEEEEEECSSSSCEEEEEE-TTSCEEEEETTTBEEEEEEC
T ss_pred ECCCCCEEEEEECCCCceeEEEEeeC-CCCcce-ecCCCCCceEEEECCCCCeEEEEEe-CCCeEEEEECCCCeEeeeec
Confidence 998877777665442 34555553 222222 2244456789999987665555542 23455554443322222333
Q ss_pred cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC-----CCCCCCeEEEEE-CCEEEEEeCCCCceEEE
Q psy8875 631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP-----QTLSHPFSISTF-EDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~-----~~~~~P~gl~v~-~~~lywtd~~~~~v~~~ 704 (734)
......+.+++.+.+. ++.+-...+.|...++........+... .......+|++. .+.++.+-...+.|...
T Consensus 188 ~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 188 EHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3445678899986544 4455555677888775433332222110 122335677774 44555555555677777
Q ss_pred eccCCCceEEE
Q psy8875 705 NKFTGDNLTAI 715 (734)
Q Consensus 705 ~~~~G~~~~~l 715 (734)
+..+++.+..+
T Consensus 267 d~~~~~~~~~~ 277 (611)
T 1nr0_A 267 NVATLKVEKTI 277 (611)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCceeeee
Confidence 76667655544
No 338
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.89 E-value=0.67 Score=49.98 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=122.9
Q ss_pred ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCC
Q psy8875 482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~ 559 (734)
+..|+..++........+ .....+.+++|.+.. ++++-...+.|...++..+.... .+......+..|++.+ ..+
T Consensus 141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~ 217 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTH-VFEGHNSTVRCLDIVEYKNI 217 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEEESSSC
T ss_pred CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEE-EECCCCCccEEEEEecCCCC
Confidence 455666666554433333 345577888887533 55566678889888887554332 3333344566777765 244
Q ss_pred cEEEEeCCCCeEEEEeCCCCceE-----------------------EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRK-----------------------VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIE 616 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~-----------------------~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~ 616 (734)
.++++-...+.|.+.++...... ............+ .+...+|+... ..+.|.
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~--~d~~i~ 293 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS--YDNTLI 293 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE--TTSCEE
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe--CCCeEE
Confidence 66666666788888887654321 1111222233333 33344555554 235677
Q ss_pred EeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875 617 RAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 617 ~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~ 696 (734)
..++........+.........+++++.+..|+.+. ..+.|...++........+.. .......|++.+++|+.+.
T Consensus 294 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~l~s~s- 369 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYTLQG--HTALVGLLRLSDKFLVSAA- 369 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEEEECC--CSSCEEEEEECSSEEEEEE-
T ss_pred EEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEcCCEEEEEe-
Confidence 777654433333333445567889987666665544 557888888765443333322 2233445666655544444
Q ss_pred CCCceEEEeccCCCceE
Q psy8875 697 QQKAIYKANKFTGDNLT 713 (734)
Q Consensus 697 ~~~~v~~~~~~~G~~~~ 713 (734)
..+.|...+..++....
T Consensus 370 ~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 370 ADGSIRGWDANDYSRKF 386 (464)
T ss_dssp TTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEECCCCceee
Confidence 34666666666555433
No 339
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.27 Score=52.64 Aligned_cols=211 Identities=9% Similarity=0.003 Sum_probs=116.3
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecC---CCCceEEEEeCCCCCccceeeec---------------cCCcEE
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPID---EGSERTVVIEEDKTIADGLAVDW---------------IYSHIY 562 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~---~g~~~~~~~~~~~~~p~glAvD~---------------~~~~lY 562 (734)
....+.+|+|.+.... +++-...+.|...++. .+........ .....+++.+ ..+.++
T Consensus 110 h~~~v~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 110 CSSTVTQITMIPNFDA-FAVSSKDGQIIVLKVNHYQQESEVKFLNC---ECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp CSSCEEEEEECTTSSE-EEEEETTSEEEEEEEEEEEETTEEEEEEE---EEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred CCCCEEEEEEeCCCCE-EEEEeCCCEEEEEEeccccCCceeecccc---ceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 3456788999875444 4454556777666552 2222211110 0111222211 125556
Q ss_pred EEeCCCCeEEEEeCCCCceEEEEcC--CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeE
Q psy8875 563 WTDAHKNTIELANFEGTMRKVLVRS--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGL 639 (734)
Q Consensus 563 ~td~~~~~I~~~~ldG~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~gl 639 (734)
++-...+.|.+.++........+.. ....+..|+++|...+|+.... .+.|...++........+. ..-.....|
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--RGIIDIWDIRFNVLIRSWSFGDHAPITHV 263 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--CCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence 6666678999999865544433333 3467899999987656665543 3566666665432221111 112223455
Q ss_pred EEecC---CCeEEEEeCCCCeEEEEecCCCc-eEEEEcCCC-----------------------CCCCCeEEEEECCEEE
Q psy8875 640 TLDLV---QRRLYWVDAKLNEISSCDYNGGN-RRLVLYSPQ-----------------------TLSHPFSISTFEDWLY 692 (734)
Q Consensus 640 avD~~---~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~~~~-----------------------~~~~P~gl~v~~~~ly 692 (734)
++.+. .+.+.++-...+.|...++.... ...+..... .......|++..+.++
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l 343 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL 343 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEE
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEE
Confidence 54432 34455565666778888876443 333331100 1111345677777777
Q ss_pred EEeCCCCceEEEeccCCCceEEEec
Q psy8875 693 WSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 693 wtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
++-...+.|...+..+++....+..
T Consensus 344 ~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 344 LTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp EEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred EecCCCCeEEEEECCCcccceEEec
Confidence 8877778888888888887776653
No 340
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.80 E-value=0.16 Score=58.79 Aligned_cols=184 Identities=11% Similarity=0.094 Sum_probs=108.8
Q ss_pred eEEeecCCCc--eEEEecCCc----ceEEEeeeccCCeEEEEEeC---CCcEEEEecCCCCc-eEEEEeCCCCCccceee
Q psy8875 485 IRKISLDHHE--MTAIVNSTK----SATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEGSE-RTVVIEEDKTIADGLAV 554 (734)
Q Consensus 485 I~~i~l~~~~--~~~l~~~~~----~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAv 554 (734)
|++..+.... -..+..... ...++.+.+..+.|+++... ...|+.++++++.. ...+.. ....... .+
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~~~~~-~~ 287 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLDADVS-LV 287 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSSSCEE-EE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCCceEE-EE
Confidence 6666554332 233333222 35678888888888776543 24789888875532 233332 2222222 25
Q ss_pred eccCCcEEEEeCC---CCeEEEEeCCCCce---EEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEE
Q psy8875 555 DWIYSHIYWTDAH---KNTIELANFEGTMR---KVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNM 627 (734)
Q Consensus 555 D~~~~~lY~td~~---~~~I~~~~ldG~~~---~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~ 627 (734)
++.++.||+.... +.+|.++++++... +.++....... .+.+..++|+++... ...+|++.+++|...+.
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~ 364 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE 364 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence 5667888877543 47899999987543 55554333222 555567788777532 23589999999876554
Q ss_pred EEEcCCCCceeEEEecCCCeEEEEeC---CCCeEEEEecCCCceEEEEc
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWVDA---KLNEISSCDYNGGNRRLVLY 673 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~D~---~~~~I~~~~~dG~~~~~i~~ 673 (734)
+.........+++.++.++.|+++-. .-..|+.+++.+...+++..
T Consensus 365 l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 365 VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence 43222222345555656777777643 23689999998777666654
No 341
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.79 E-value=0.39 Score=50.69 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=127.8
Q ss_pred ceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeec
Q psy8875 484 DIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDW 556 (734)
Q Consensus 484 ~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~ 556 (734)
.|+.-++..... ..+......+..++|.+....| .+-...+.|...++..... ...++......+..+++.+
T Consensus 89 ~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~ 167 (380)
T 3iz6_a 89 RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP 167 (380)
T ss_dssp EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE-EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS
T ss_pred eEEEEECCCCccceEEecCCCCEEEEEECCCCCEE-EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec
Confidence 344444443332 2232334456677888755444 4444456666665542211 0111111223345566655
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEc-----CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEEEE
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVR-----SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNMVI 629 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-----~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~lv 629 (734)
..+..+++-...+.|.+.++........+. ........+++.+..+.++.+-.. .+.|...++. +.... .+
T Consensus 168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~-D~~v~~wd~~~~~~~~~-~~ 245 (380)
T 3iz6_a 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC-DTTVRLWDLRITSRAVR-TY 245 (380)
T ss_dssp SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET-TSCEEEEETTTTCCCCE-EE
T ss_pred CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC-CCeEEEEECCCCCcceE-EE
Confidence 556666677778899999987655544442 233456788888877777777633 4566666654 22222 23
Q ss_pred EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-----CCCCCeEEEE-ECCEEEEEeCCCCceEE
Q psy8875 630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-----TLSHPFSIST-FEDWLYWSDWQQKAIYK 703 (734)
Q Consensus 630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-----~~~~P~gl~v-~~~~lywtd~~~~~v~~ 703 (734)
.......+.|++.+.+ .++++-+..+.|...++.......++.... ......++++ ..+.++++-...+.|+.
T Consensus 246 ~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324 (380)
T ss_dssp CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence 3334456789997654 455566667788888877654444433211 1112356777 34566666666778888
Q ss_pred EeccCCCceEEE
Q psy8875 704 ANKFTGDNLTAI 715 (734)
Q Consensus 704 ~~~~~G~~~~~l 715 (734)
.+..+++.+..+
T Consensus 325 wd~~~~~~~~~~ 336 (380)
T 3iz6_a 325 WDTLLAEMVLNL 336 (380)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCceEEEE
Confidence 777777665554
No 342
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.78 E-value=0.63 Score=48.83 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=102.0
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-C---CCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEEcCC
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEED-K---TIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLVRSY 588 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-~---~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~~~~ 588 (734)
.+.||+. ...+.|+.+++..|.......... . ......+++ .+.||+.. ..+.|...++. |+.+-......
T Consensus 143 ~~~v~v~-~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 DGLVLIH-TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp TTEEEEE-CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEE-cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEEeccc
Confidence 4566654 345677777776454322221100 0 011234444 46666653 35678888764 44332222110
Q ss_pred C---------C-CceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875 589 L---------D-EPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 589 l---------~-~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
. . .....+++ .+.||+... .+.|...++. |..+ ....+..+.+++++ +++||++.. .+.
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~--~g~l~~~d~~tG~~~---w~~~~~~~~~~~~~--~~~l~~~~~-~g~ 288 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVV--NGVVFALAY--NGNLTALDLRSGQIM---WKRELGSVNDFIVD--GNRIYLVDQ-NDR 288 (376)
T ss_dssp -----------CCCCCCEEE--TTEEEEECT--TSCEEEEETTTCCEE---EEECCCCEEEEEEE--TTEEEEEET-TCC
T ss_pred CCCCcccccccccCCCcEEE--CCEEEEEec--CcEEEEEECCCCcEE---eeccCCCCCCceEE--CCEEEEEcC-CCe
Confidence 0 0 00122232 578888763 4678887774 4322 22334445667775 889999975 467
Q ss_pred EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
|..++.......-.... .......++.+.+++||+.+.. +.|+.++..+|+.+....
T Consensus 289 l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~l~v~~~~-g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 289 VMALTIDGGVTLWTQSD-LLHRLLTSPVLYNGNLVVGDSE-GYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp EEEEETTTCCEEEEECT-TTTSCCCCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCcEEEeecc-cCCCcccCCEEECCEEEEEeCC-CeEEEEECCCCcEEEEEe
Confidence 99988754433322221 1112233456688999998864 679999998998776554
No 343
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.095 Score=61.61 Aligned_cols=220 Identities=9% Similarity=-0.024 Sum_probs=123.3
Q ss_pred eeeeee-ccceEEeecCCCceEEEec----CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCC
Q psy8875 476 SLLFAR-KHDIRKISLDHHEMTAIVN----STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTI 548 (734)
Q Consensus 476 ~l~~~~-~~~I~~i~l~~~~~~~l~~----~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~ 548 (734)
.|++.. ...|.+++.....+..+.. ....+.+|..|. .+.||+. ...+.|++++...+.. +.+.. .....
T Consensus 375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWig-t~~~Gl~~~~~~~~~~-~~~~~~~~~~~~ 451 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFG-TYLGNISYYNTRLKKF-QIIELEKNELLD 451 (781)
T ss_dssp CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEEE-ETTEEEEEECSSSCEE-EECCSTTTCCCC
T ss_pred CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEE-eccCCEEEEcCCCCcE-EEeccCCCCCCe
Confidence 455544 4667777665433322211 123567777774 5666554 4446788887653322 11111 11234
Q ss_pred ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC-----CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY-----LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-----l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
+..|+.| ..++||++.. ..|.+.+..+...+.+.... ...+.+|+.|+ .|.|+++..+ ..|.+.+.++.
T Consensus 452 v~~i~~d-~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~--~Gl~~~~~~~~ 525 (781)
T 3v9f_A 452 VRVFYED-KNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG--GGVGIYTPDMQ 525 (781)
T ss_dssp EEEEEEC-TTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS--SCEEEECTTCC
T ss_pred EEEEEEC-CCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcC--CCEEEEeCCCC
Confidence 6678888 4577777765 56888887654443333221 24678899996 6778877642 45888777655
Q ss_pred ceEEEEE-cCC--CCceeEEEecCCCeEEEEeCCCCeE-EEEecCCCceEEEEcCCCCC--CCCeEEEEE-CCEEEEEeC
Q psy8875 624 HRNMVIV-SDI--KWPNGLTLDLVQRRLYWVDAKLNEI-SSCDYNGGNRRLVLYSPQTL--SHPFSISTF-EDWLYWSDW 696 (734)
Q Consensus 624 ~~~~lv~-~~l--~~P~glavD~~~~~LYw~D~~~~~I-~~~~~dG~~~~~i~~~~~~~--~~P~gl~v~-~~~lywtd~ 696 (734)
..+.+.. ..+ ....+|+.| ..++|+++.. +.| .+++......+.+... ..+ ....+|..+ .+.||++.
T Consensus 526 ~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi~T~--~Glv~~~d~~~~~~~~~~~~-~gl~~~~i~~i~~d~~g~lW~~t- 600 (781)
T 3v9f_A 526 LVRKFNQYEGFCSNTINQIYRS-SKGQMWLATG--EGLVCFPSARNFDYQVFQRK-EGLPNTHIRAISEDKNGNIWAST- 600 (781)
T ss_dssp EEEEECTTTTCSCSCEEEEEEC-TTSCEEEEET--TEEEEESCTTTCCCEEECGG-GTCSCCCCCEEEECSSSCEEEEC-
T ss_pred eEEEccCCCCCCCCeeEEEEEC-CCCCEEEEEC--CCceEEECCCCCcEEEcccc-CCCCCceEEEEEECCCCCEEEEc-
Confidence 4333221 112 234577777 5677877765 345 8877665544444322 112 234577775 57777775
Q ss_pred CCCceEEEeccCCC
Q psy8875 697 QQKAIYKANKFTGD 710 (734)
Q Consensus 697 ~~~~v~~~~~~~G~ 710 (734)
.+.|.++++.+++
T Consensus 601 -~~Gl~~~~~~~~~ 613 (781)
T 3v9f_A 601 -NTGISCYITSKKC 613 (781)
T ss_dssp -SSCEEEEETTTTE
T ss_pred -CCceEEEECCCCc
Confidence 3457777765443
No 344
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.77 E-value=0.59 Score=47.61 Aligned_cols=208 Identities=8% Similarity=-0.017 Sum_probs=114.9
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
...+.+|+|.|..+.+..+-...+.|+.-++..+... ...+..-...+..|++.+.+..|+ +-...+.|...+..
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~-s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL-SGSWDGTLRLWDLT 116 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE-EEcccccceEEeec
Confidence 4567899999877777777777788877776643321 112222344567888886555454 44446788888887
Q ss_pred CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCceeEEEecCCC-eEEEEeCCC
Q psy8875 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNGLTLDLVQR-RLYWVDAKL 655 (734)
Q Consensus 578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~glavD~~~~-~LYw~D~~~ 655 (734)
.................+...+...+|+.... .+.|...++.+.....+... .......+++.+... .++++-...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR--DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecC--CCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 76665555555556667777766655555442 34555555555443332211 123344556654433 344454455
Q ss_pred CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
+.|...++........+.. ......+|++. .+.++++-...+.|...+..+++.+..
T Consensus 195 ~~i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 6777777765544433322 12233456663 334444433445555555544444333
No 345
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.76 E-value=0.75 Score=49.33 Aligned_cols=213 Identities=11% Similarity=0.025 Sum_probs=117.7
Q ss_pred eccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875 481 RKHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559 (734)
Q Consensus 481 ~~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~ 559 (734)
.+..|+..++.......... ....+.+++++ +.+.++-...+.|...++..+.....+ ......+..|+++ .
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~--~- 223 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN--N- 223 (435)
T ss_dssp SSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC--T-
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc--C-
Confidence 34556666665544433333 44567788874 445556667888988888755433332 2223334445543 3
Q ss_pred cEEEEeCCCCeEEEEeCCCCceE---EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRK---VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~---~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
.++++-...+.|.+.++...... ..+.........++++ ..+|+... ..+.|...++........+.......
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v 299 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGI 299 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe--CCCeEEEEECCcCcEEEEEcCCCCcE
Confidence 45556566788999988654332 2333444556677774 34555554 24677777776544433344334445
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875 637 NGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
..++++ ++. +++-...+.|...++........+.. ......+|++.+.+|+... ..+.|...+..++.
T Consensus 300 ~~~~~~--~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 300 ACLQYR--DRL-VVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRFDNKRIVSGA-YDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEEEE--TTE-EEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEECCSSEEEEEE-TTSCEEEEEHHHHT
T ss_pred EEEEeC--CCE-EEEEeCCCeEEEEECCCCCEEEEEeC--CcCcEEEEEecCCEEEEEe-CCCcEEEEECCCCC
Confidence 566664 444 44444567888888775444333332 2233455666545444444 44666666654443
No 346
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.75 E-value=0.82 Score=49.09 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=120.4
Q ss_pred ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++........+ .....+.+++++ .+. +++-...+.|...++..+..... +......+..++++ +.
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~---~~ 250 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKR-VVSGSRDATLRVWDIETGQCLHV-LMGHVAAVRCVQYD---GR 250 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE-EEEEETTSEEEEEESSSCCEEEE-EECCSSCEEEEEEC---SS
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCE-EEEEeCCCEEEEEECCCCcEEEE-EcCCcccEEEEEEC---CC
Confidence 345666666544433322 234456777776 344 45555678888888875543333 33333445556653 44
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla 640 (734)
++++-...+.|.+.++........+.........++++ ..+|+... ..+.|...++........+.........++
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 326 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGME 326 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC--CCEEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence 45555556889998886554443443444456677763 34455444 246677777654433333333333445566
Q ss_pred EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-CCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-TLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
++ ++.|+ +-...+.|...++........+.... ......+|++.+++|+.+ ...+.|...+..+|+.+..+
T Consensus 327 ~~--~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 327 LK--DNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EE--TTEEE-EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE-ETTSEEEEEETTTCCEEEEE
T ss_pred Ee--CCEEE-EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEE-eCCCeEEEEECCCCceeeee
Confidence 54 45444 44456788888875444333333211 222334566655544444 44577777787778776665
No 347
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.75 E-value=0.47 Score=54.71 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=35.3
Q ss_pred CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
+.|..+++......--+.... ...--.++..++.||+. ...+.|+.++..+|+.+..+..
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeC
Confidence 567777765433222221110 01112245567888887 4568899999999998877753
No 348
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.75 E-value=0.32 Score=56.00 Aligned_cols=208 Identities=10% Similarity=0.033 Sum_probs=125.7
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ 575 (734)
.....+.+|++.+....++.+-...+.|+..++..+.. ....+......+..|++.+.+ ++..+-...+.|.+.+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWD 458 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEE
Confidence 34556788999877777888877888888877764321 112233334556788888654 4555555678999999
Q ss_pred CCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---CCCCceeEEEecCC-CeEEEE
Q psy8875 576 FEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---DIKWPNGLTLDLVQ-RRLYWV 651 (734)
Q Consensus 576 ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---~l~~P~glavD~~~-~~LYw~ 651 (734)
+........+.........|++.|...+|.-... .+.|...++.+.....+... .......+++.+.. ..++++
T Consensus 459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred CCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC--CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 8765544444455667889999987666655542 35666666655444333221 12234677776544 234555
Q ss_pred eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCce
Q psy8875 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
-...+.|...++........+.. ......+|++. .+.++++-...+.|...+..+++.+
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 55567888888876655444432 23344567773 3455555555566666666555443
No 349
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=96.74 E-value=0.05 Score=63.08 Aligned_cols=183 Identities=12% Similarity=0.073 Sum_probs=105.3
Q ss_pred cceEEeecCCCceE-E-EecCCcceEEEeeeccCCeEEEEEeCC------------CcEEEEecCCCCce-EEEEeCC--
Q psy8875 483 HDIRKISLDHHEMT-A-IVNSTKSATAIDFVFRTGMIFWSDISE------------KKIYKAPIDEGSER-TVVIEED-- 545 (734)
Q Consensus 483 ~~I~~i~l~~~~~~-~-l~~~~~~~~~i~~d~~~~~lyw~d~~~------------~~I~~~~l~~g~~~-~~~~~~~-- 545 (734)
..|+.+++.+.... . .+... ...+++|.+....||++.... ..|++.++.++... ..+....
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred EEEEEEECCCCCCcCCcccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 45888888766543 1 11111 115788988888888886532 34899888755432 3333211
Q ss_pred CCCccceeeeccCCcEEEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cC-CCceEEEecc
Q psy8875 546 KTIADGLAVDWIYSHIYWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WG-QNAKIERAGM 620 (734)
Q Consensus 546 ~~~p~glAvD~~~~~lY~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~-~~~~I~~~~l 620 (734)
.....++++.+.++.|+++... ...|++.+..+...+.|.... ......+. +..+ ||++. +. ...+|+++++
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV-GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS-SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC-CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence 1233477888878888776543 347777776544444444322 22233332 4444 66653 32 3579999999
Q ss_pred CCCce---EEEEEcC-CCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEE
Q psy8875 621 DGSHR---NMVIVSD-IKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLV 671 (734)
Q Consensus 621 dG~~~---~~lv~~~-l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i 671 (734)
++... +.++... -....++++. +++|+++-. ...+|+.++++|...+.+
T Consensus 303 ~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred CCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 76542 4555332 2224566665 778887753 345788888877755443
No 350
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=96.74 E-value=0.00069 Score=80.92 Aligned_cols=34 Identities=44% Similarity=1.076 Sum_probs=32.2
Q ss_pred CceecCCCceecCcCccCCCCCCCCCCccccccc
Q psy8875 58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK 91 (734)
Q Consensus 58 ~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~ 91 (734)
.+|+|.+|+||+..|+|||.+||.|+|||.+|..
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred cccccCCCceEccceecCCcccCCCccccccCCC
Confidence 6799999999999999999999999999999974
No 351
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=96.73 E-value=0.00087 Score=46.03 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=26.7
Q ss_pred cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
++++|..++......|+++.++|+|.|++|| .++.|+
T Consensus 2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~----~G~~Ce 38 (39)
T 1edm_B 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGF----EGKNCE 38 (39)
T ss_dssp CCCTTTTCCCCTTCEEEEETTEEEEECCTTC----CSTTSC
T ss_pred ccccCCCCCCCCCCEeEcCCCceEeECCCCC----cCCccC
Confidence 4567765443334579999999999999999 456663
No 352
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.72 E-value=0.51 Score=48.81 Aligned_cols=177 Identities=11% Similarity=0.037 Sum_probs=103.4
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+..++|.+ .+. +++-...+.|...++..+.... .+......+..|++.+. +.++++-...+.|.+.++.....
T Consensus 143 ~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~ 218 (340)
T 1got_B 143 TGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMC 218 (340)
T ss_dssp SSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSE
T ss_pred CccEEEEEECC-CCc-EEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCee
Confidence 34556677764 344 4455567788888887543332 23323445678888864 55666666678999999866554
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cC-CCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SD-IKWPNGLTLDLVQRRLYWVDAKLNEIS 659 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~-l~~P~glavD~~~~~LYw~D~~~~~I~ 659 (734)
...+........+|++.|...+|.... ..+.|...++........+. .. ......|++.+.+..|. +-...+.|.
T Consensus 219 ~~~~~~h~~~v~~v~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~d~~i~ 295 (340)
T 1got_B 219 RQTFTGHESDINAICFFPNGNAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCN 295 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE-EEETTSEEE
T ss_pred EEEEcCCcCCEEEEEEcCCCCEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE-EECCCCeEE
Confidence 444545556788999998655555443 34667666665433222221 11 12356788876555554 444567888
Q ss_pred EEecCCCceEEEEcCCCCCCCCeEEEEE
Q psy8875 660 SCDYNGGNRRLVLYSPQTLSHPFSISTF 687 (734)
Q Consensus 660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~ 687 (734)
..++........+.. .......|++.
T Consensus 296 vwd~~~~~~~~~~~~--h~~~v~~~~~s 321 (340)
T 1got_B 296 VWDALKADRAGVLAG--HDNRVSCLGVT 321 (340)
T ss_dssp EEETTTCCEEEEEEC--CSSCEEEEEEC
T ss_pred EEEcccCcEeeEeec--CCCcEEEEEEc
Confidence 888665544433332 12334556663
No 353
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.68 E-value=0.091 Score=54.01 Aligned_cols=177 Identities=11% Similarity=0.023 Sum_probs=102.6
Q ss_pred ccceEEeec-CCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---------CCceEEEEeCCCCCc
Q psy8875 482 KHDIRKISL-DHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---------GSERTVVIEEDKTIA 549 (734)
Q Consensus 482 ~~~I~~i~l-~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---------g~~~~~~~~~~~~~p 549 (734)
...|+..++ .......+.. ....+.+|+|.+ +.++++-...+.|+..++.. +..... +. ....+
T Consensus 78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~~v 153 (342)
T 1yfq_A 78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-TK-VKNKI 153 (342)
T ss_dssp TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-SS-SCCCE
T ss_pred CCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-Ee-eCCce
Confidence 456777777 6666655554 556778999998 44555555677888777653 111111 11 12345
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCC-Cc--eEEEEcCCCCCceeEEEeC-CCCeEEEEecCCCceEEEeccCCC--
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEG-TM--RKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQNAKIERAGMDGS-- 623 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~--~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~~~~I~~~~ldG~-- 623 (734)
..|++.+ ..|+.+ ...+.|.+.++.. .. ...........+..|++.| ...+|+.... .+.|...+++..
T Consensus 154 ~~~~~~~--~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 154 FTMDTNS--SRLIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DGRVAVEFFDDQGD 228 (342)
T ss_dssp EEEEECS--SEEEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET--TSEEEEEECCTTCC
T ss_pred EEEEecC--CcEEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec--CCcEEEEEEcCCCc
Confidence 5666653 334444 4467899999876 22 2333334455788999988 6555555542 355555444432
Q ss_pred ----ceEEEEEcCC---------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce
Q psy8875 624 ----HRNMVIVSDI---------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR 668 (734)
Q Consensus 624 ----~~~~lv~~~l---------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~ 668 (734)
.....+.... .....|++.+.+.+|+.+. ..+.|...++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKK 285 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccHhH
Confidence 2222232221 2567889987666665554 557888888765443
No 354
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=96.66 E-value=0.00085 Score=63.20 Aligned_cols=52 Identities=37% Similarity=0.830 Sum_probs=41.7
Q ss_pred CCcEecCCCCccccccCcCCCC----CcccceeccCCceEEecCCCeeeCCCCCcccccc
Q psy8875 416 EGYKLSSNRHTCIDIDECETPG----SCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA 471 (734)
Q Consensus 416 ~G~~l~~~~~~C~~~~eC~~~~----~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~ 471 (734)
.||++. ..+.+++||..+. .|++.|+|+.|+|.|.|++||.+..++++ |++.
T Consensus 113 ~Gf~~~---~~~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~-C~~~ 168 (170)
T 1szb_A 113 TGFEAF---YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT-CSEQ 168 (170)
T ss_dssp CEEEEE---EEEEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSC-EEEC
T ss_pred cCceee---eeccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCc-cccc
Confidence 567653 3567899998643 29999999999999999999999888766 8653
No 355
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.65 E-value=0.74 Score=47.12 Aligned_cols=217 Identities=11% Similarity=0.015 Sum_probs=121.5
Q ss_pred ccceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeecc---
Q psy8875 482 KHDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI--- 557 (734)
Q Consensus 482 ~~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~--- 557 (734)
+..|+..++.... ...+......+.+|++++.. .++++-...+.|...++. +.....+ ......+..+++.+.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~-~~~~~~~-~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECCC---
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEE-eccCCcEEEEEEccCCCC
Confidence 3456666665443 33344445677889998754 455565667888888876 3322222 222334455666543
Q ss_pred --CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC
Q psy8875 558 --YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW 635 (734)
Q Consensus 558 --~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~ 635 (734)
.+.++++-...+.|.+.++........+.........+++.|...+|.-.. ..+.|...++........+. .-..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~-~~~~ 239 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIMLWNLAAKKAMYTLS-AQDE 239 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEE-CCSC
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEec-CCCc
Confidence 233566666678899999876655444545566788999998655554443 34677777776544332332 2345
Q ss_pred ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC------CCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875 636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ------TLSHPFSISTF-EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~------~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~ 706 (734)
...|++.+.+..|..+.. ..|...+++.......+.... ......+|++. .+.++++-...+.|...+.
T Consensus 240 v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEEEECSSSSEEEEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 678999877777766654 346666665543322222110 01223466663 3444444444455554443
No 356
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=96.64 E-value=0.00035 Score=53.19 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=31.4
Q ss_pred cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 388 GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
++++|..++..-. ..|++++++|+|.|++||.+ +..|.+.++|.
T Consensus 10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~---G~~C~~~~~C~ 55 (61)
T 2k2s_B 10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRI---SLDGTGNVTCI 55 (61)
T ss_dssp SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEE---EECSSSCEEEE
T ss_pred CCCcCcCCCCcCCCccccccCCCceEeECCCCCcc---CCCCCCCCEec
Confidence 4677876553333 47999999999999999951 45676655553
No 357
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.64 E-value=0.85 Score=47.78 Aligned_cols=186 Identities=10% Similarity=0.069 Sum_probs=101.7
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCceEEEEcCC-C--
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMRKVLVRSY-L-- 589 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~~~l~~~~-l-- 589 (734)
.+.||+.. ..+.|+.+++..|...-. ...........+++ .+.||+... .+.|...+. +|+.+-...... .
T Consensus 103 ~~~v~v~~-~~g~l~a~d~~tG~~~W~-~~~~~~~~~~p~~~--~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 103 GGHVYIGS-EKAQVYALNTSDGTVAWQ-TKVAGEALSRPVVS--DGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp TTEEEEEE-TTSEEEEEETTTCCEEEE-EECSSCCCSCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCC----
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEE-EeCCCceEcCCEEE--CCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCcee
Confidence 67888765 457788888875554322 22111112223343 566776543 567888886 455433322111 0
Q ss_pred -CCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcC---------C-CCceeEEEecCCCeEEEEeCCCCe
Q psy8875 590 -DEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSD---------I-KWPNGLTLDLVQRRLYWVDAKLNE 657 (734)
Q Consensus 590 -~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~---------l-~~P~glavD~~~~~LYw~D~~~~~ 657 (734)
......+++ .+.||+... .+.|...++ +|..+...-... + ......++ .+++||+.. ..+.
T Consensus 178 ~~~~~~~~~~--~~~v~~g~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~ 250 (376)
T 3q7m_A 178 LRGESAPTTA--FGAAVVGGD--NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGN 250 (376)
T ss_dssp -CCCCCCEEE--TTEEEECCT--TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSC
T ss_pred ecCCCCcEEE--CCEEEEEcC--CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcE
Confidence 011233443 567777642 356777776 344332221110 0 00112233 368888875 3568
Q ss_pred EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
|..++.......-... ...+.++++.+++||++... +.|+.++..+|+.+....
T Consensus 251 l~~~d~~tG~~~w~~~----~~~~~~~~~~~~~l~~~~~~-g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRE----LGSVNDFIVDGNRIYLVDQN-DRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp EEEEETTTCCEEEEEC----CCCEEEEEEETTEEEEEETT-CCEEEEETTTCCEEEEEC
T ss_pred EEEEECCCCcEEeecc----CCCCCCceEECCEEEEEcCC-CeEEEEECCCCcEEEeec
Confidence 8888875333322221 33456788899999999864 679999998998765543
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=96.62 E-value=0.012 Score=65.11 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=76.0
Q ss_pred CCCCceeEEEeCCCCeEEEEecCC--------------------CceEEEeccCCCc-------eEEEEE----------
Q psy8875 588 YLDEPRSLALNPIDGWMYWSDWGQ--------------------NAKIERAGMDGSH-------RNMVIV---------- 630 (734)
Q Consensus 588 ~l~~P~~iavD~~~g~LYwtd~~~--------------------~~~I~~~~ldG~~-------~~~lv~---------- 630 (734)
.+..|.+|+++|.+|.||++-.+. .++|++...++.. -.+++.
T Consensus 382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~ 461 (592)
T 4a9v_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence 457899999999999999995421 2679998875532 122332
Q ss_pred -----------cCCCCceeEEEecCCCeEEE-EeCC-----------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-
Q psy8875 631 -----------SDIKWPNGLTLDLVQRRLYW-VDAK-----------LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST- 686 (734)
Q Consensus 631 -----------~~l~~P~glavD~~~~~LYw-~D~~-----------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v- 686 (734)
..+..|++|++| ..+.||+ +|.. .+.|++++.+....+.++.. .....|.||++
T Consensus 462 ~~~g~~~~~~~~~fnsPDnL~fd-~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafS 539 (592)
T 4a9v_A 462 PKGGSSNITPQNMFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFS 539 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEEC
T ss_pred cccCccCccccCccCCCCceEEC-CCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEEC
Confidence 136789999999 4688999 7863 34799998866666666643 23457899999
Q ss_pred -ECCEEEEEe
Q psy8875 687 -FEDWLYWSD 695 (734)
Q Consensus 687 -~~~~lywtd 695 (734)
++..||++-
T Consensus 540 PD~ktLfV~v 549 (592)
T 4a9v_A 540 PDQKTLFVGI 549 (592)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 466899875
No 359
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.0061 Score=70.92 Aligned_cols=217 Identities=9% Similarity=-0.024 Sum_probs=119.6
Q ss_pred cceEEeecCCCce---EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-------------
Q psy8875 483 HDIRKISLDHHEM---TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK------------- 546 (734)
Q Consensus 483 ~~I~~i~l~~~~~---~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~------------- 546 (734)
..|+..++++... ..+. ..+..++|.|..+.|.++. .+.|+..++.++....+ ...+.
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp EEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHH
T ss_pred eEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEE-ecCCCcCCeEccccccee
Confidence 5677777776654 3331 3456688888888888774 56788888875543322 11111
Q ss_pred -----CCccceeeeccCCcEEEEeCCC---------------------------------CeEEEEeCCCCceE---EEE
Q psy8875 547 -----TIADGLAVDWIYSHIYWTDAHK---------------------------------NTIELANFEGTMRK---VLV 585 (734)
Q Consensus 547 -----~~p~glAvD~~~~~lY~td~~~---------------------------------~~I~~~~ldG~~~~---~l~ 585 (734)
....++++.+.++.|+++.... ..|.+.++++.... .+.
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 1124778877778887754221 15666666654421 111
Q ss_pred c-----CCCCCceeEEEeCCCCeEEEE--ecC-CCceEEEec----cCCCceEEEE----EcCCCCce-----eEEEecC
Q psy8875 586 R-----SYLDEPRSLALNPIDGWMYWS--DWG-QNAKIERAG----MDGSHRNMVI----VSDIKWPN-----GLTLDLV 644 (734)
Q Consensus 586 ~-----~~l~~P~~iavD~~~g~LYwt--d~~-~~~~I~~~~----ldG~~~~~lv----~~~l~~P~-----glavD~~ 644 (734)
. ........+++.|. +++.++ +.. ....|+..+ +++...+.++ ...-.+.. .+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 0 11223467888886 666555 321 124688887 5543322222 12112222 6778777
Q ss_pred CCeEEEE-e--CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCC------CCceEEEeccCC
Q psy8875 645 QRRLYWV-D--AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQ------QKAIYKANKFTG 709 (734)
Q Consensus 645 ~~~LYw~-D--~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~------~~~v~~~~~~~G 709 (734)
+++||++ . .+...|+.+++++...+.+.... ....++.. .+++||++... ...|++++..+|
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~---~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAIQITSGK---WEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCEECSCSS---SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceEecccCc---eEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 7777763 2 23457999998887755543211 11122222 56788887653 346777765444
No 360
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.60 E-value=0.87 Score=56.20 Aligned_cols=227 Identities=9% Similarity=-0.040 Sum_probs=132.6
Q ss_pred ccceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeecc-CC
Q psy8875 482 KHDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI-YS 559 (734)
Q Consensus 482 ~~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~-~~ 559 (734)
+..|+..++..... ..+......+.+++|.+....|. +-...+.|...++..+..... +......+..+++.+. .+
T Consensus 636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 713 (1249)
T 3sfz_A 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA-TCSADKKVKIWDSATGKLVHT-YDEHSEQVNCCHFTNKSNH 713 (1249)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSSC
T ss_pred CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEE-EEeCCCeEEEEECCCCceEEE-EcCCCCcEEEEEEecCCCc
Confidence 34566666654433 33333456788999998655554 444678888888885544333 3334445667777654 34
Q ss_pred cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cC------
Q psy8875 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SD------ 632 (734)
Q Consensus 560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~------ 632 (734)
.++++-...+.|.+.++........+.........+++.|...+|+.... .+.|...++........+. ..
T Consensus 714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA--DGTLRLWDVRSANERKSINVKRFFLSSE 791 (1249)
T ss_dssp CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--SSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--CCeEEEEeCCCCcccceecccccccccC
Confidence 45566666788999998776655555556667889999986665555542 3566666654333222211 11
Q ss_pred ------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEe
Q psy8875 633 ------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 633 ------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~ 705 (734)
......+++.+.+..|..+. .+.|...++........+.. ........+++ ..+.+.++-...+.|...+
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred CccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 11345677877777777665 46788888765544333321 12334456666 2344444545556666666
Q ss_pred ccCCCceEEE
Q psy8875 706 KFTGDNLTAI 715 (734)
Q Consensus 706 ~~~G~~~~~l 715 (734)
..++..+..+
T Consensus 869 ~~~~~~~~~~ 878 (1249)
T 3sfz_A 869 IDSRLKVADC 878 (1249)
T ss_dssp TTTTEEEEEE
T ss_pred cCCCceeeec
Confidence 6555544443
No 361
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.59 E-value=0.97 Score=47.77 Aligned_cols=214 Identities=8% Similarity=0.037 Sum_probs=120.2
Q ss_pred ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++........+. ....+.+|+|.+....| ++-...+.|+..++..+..... +. ....+..+++.+..++
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLT-LS-IEDGVTTVAVSPGDGK 220 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEE-EE-CSSCEEEEEECSTTCC
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEE-EEecCCCcEEEEECCCCeeEEE-EE-cCCCcEEEEEECCCCC
Confidence 3456666666554433333 44567899998866555 4555678888888875433222 22 2345677888876677
Q ss_pred EEEEeCCCCeEEEEeCCCCceEEEE-------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---------
Q psy8875 561 IYWTDAHKNTIELANFEGTMRKVLV-------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--------- 624 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~~~l~-------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--------- 624 (734)
++++-...+.|.+.++........+ ........+|++.|...+|+-.. ..+.|...++....
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCCcccccCCC
Confidence 7777777788999988654432222 12334577899998665665544 23555555543211
Q ss_pred ---eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-------CEEEEE
Q psy8875 625 ---RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-------DWLYWS 694 (734)
Q Consensus 625 ---~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-------~~lywt 694 (734)
....+.........+++.+.+.+|+ +-...+.|...++........+.. ......+|++.. +.++++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~~~~~~l~~--h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQG--HRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEECC--CCCCEEEEEecCCcCcCCCCCEEEE
Confidence 1111222334456778875555554 444556788877665544433332 223345566542 456666
Q ss_pred eCCCCceEE
Q psy8875 695 DWQQKAIYK 703 (734)
Q Consensus 695 d~~~~~v~~ 703 (734)
-...+.|..
T Consensus 376 gs~Dg~i~i 384 (393)
T 1erj_A 376 GSGDCKARI 384 (393)
T ss_dssp EETTSEEEE
T ss_pred ECCCCcEEE
Confidence 555454433
No 362
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=96.58 E-value=0.0012 Score=78.94 Aligned_cols=31 Identities=48% Similarity=1.090 Sum_probs=29.7
Q ss_pred ccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875 138 SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168 (734)
Q Consensus 138 ~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~ 168 (734)
+.|+|.+|+||+..|+|||..||.|+|||.+
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~ 151 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDERD 151 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGGTT
T ss_pred cccccCCCceEccceecCCcccCCCcccccc
Confidence 5699999999999999999999999999988
No 363
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.57 E-value=0.3 Score=57.39 Aligned_cols=214 Identities=9% Similarity=0.042 Sum_probs=120.4
Q ss_pred cceEEeecCCCceEEEec-------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-------CCCC
Q psy8875 483 HDIRKISLDHHEMTAIVN-------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-------DKTI 548 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~-------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-------~~~~ 548 (734)
..|.+++.....+..+.. ....+.+|..|. .+.||+ -...+.|.+++...+......... ....
T Consensus 330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 566666655444443321 123467887774 455555 444557888877643332222111 1234
Q ss_pred ccceeeeccCCc-EEEEeCCCCeEEEEeCCCCceEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875 549 ADGLAVDWIYSH-IYWTDAHKNTIELANFEGTMRKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS 623 (734)
Q Consensus 549 p~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~ 623 (734)
+.+|+.| ..++ ||+... .+.|.+.+..+...+.+... ....+.+|+.|+ .|.|++... ..|.+.+.+..
T Consensus 408 v~~i~~d-~~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~---~Gl~~~~~~~~ 481 (795)
T 4a2l_A 408 IKAVYVD-EKKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL---SALVRFNPEQR 481 (795)
T ss_dssp EEEEEEE-TTTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES---SCEEEEETTTT
T ss_pred EEEEEEc-CCCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec---CceeEEeCCCC
Confidence 5678888 4567 666544 35688888776544444321 123567888886 577887763 45777776554
Q ss_pred ceEEEEEc----CC--CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc--CCCCC--CCCeEEEEE-CCEEE
Q psy8875 624 HRNMVIVS----DI--KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY--SPQTL--SHPFSISTF-EDWLY 692 (734)
Q Consensus 624 ~~~~lv~~----~l--~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~--~~~~~--~~P~gl~v~-~~~ly 692 (734)
..+.+... .+ .....|..| ..++|+++.. +.|.+++..+... .+.. ....+ ....+|..+ .+.||
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRD-SHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEEC-TTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred eEEEccccccccccCCceEEEEEEC-CCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 33322211 11 345678887 5778887775 5788888765544 3221 11112 234566664 56777
Q ss_pred EEeCCCCceEEEeccCCC
Q psy8875 693 WSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 693 wtd~~~~~v~~~~~~~G~ 710 (734)
++..+ .|+++++.+++
T Consensus 558 igT~~--Gl~~~d~~~~~ 573 (795)
T 4a2l_A 558 VGTRE--GFYCFNEKDKQ 573 (795)
T ss_dssp EEESS--CEEEEETTTTE
T ss_pred EEeCC--CceeECCCCCc
Confidence 76654 68888875553
No 364
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.52 E-value=0.83 Score=46.13 Aligned_cols=183 Identities=7% Similarity=0.062 Sum_probs=100.5
Q ss_pred ccceEEeecCCC---ceEEEecCCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeec
Q psy8875 482 KHDIRKISLDHH---EMTAIVNSTKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDW 556 (734)
Q Consensus 482 ~~~I~~i~l~~~---~~~~l~~~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~ 556 (734)
+..|+..++.+. ....+......+.+|+|.+. .+.++.+-...+.|+..++..+.. ....+......+..|++.+
T Consensus 30 D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p 109 (297)
T 2pm7_B 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109 (297)
T ss_dssp TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC
T ss_pred CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc
Confidence 344555555432 22333334456778888643 356666766788888888775432 1122222234466777776
Q ss_pred cC-CcEEEEeCCCCeEEEEeCCCCc--eEEEEcCCCCCceeEEEeCCC------------CeEEEEecCCCceEEEeccC
Q psy8875 557 IY-SHIYWTDAHKNTIELANFEGTM--RKVLVRSYLDEPRSLALNPID------------GWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 557 ~~-~~lY~td~~~~~I~~~~ldG~~--~~~l~~~~l~~P~~iavD~~~------------g~LYwtd~~~~~~I~~~~ld 621 (734)
.. +.++.+-...+.|.+.++.... ...++.........+++.|.. +.++.+-. ..+.|...++.
T Consensus 110 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~ 188 (297)
T 2pm7_B 110 HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYN 188 (297)
T ss_dssp GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEE
T ss_pred CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEc
Confidence 42 5566666667889888886432 122333444556778887752 34555542 23445444443
Q ss_pred CCc-eE---EEEEcCCCCceeEEEecCC--CeEEEEeCCCCeEEEEecCC
Q psy8875 622 GSH-RN---MVIVSDIKWPNGLTLDLVQ--RRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 622 G~~-~~---~lv~~~l~~P~glavD~~~--~~LYw~D~~~~~I~~~~~dG 665 (734)
... .. ..+.........|++.+.. +.++.+-+..+.|...+++.
T Consensus 189 ~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 322 11 1122233456788887654 45556655666777777654
No 365
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.51 E-value=0.92 Score=47.70 Aligned_cols=200 Identities=9% Similarity=0.030 Sum_probs=114.5
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe----CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-C
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE----EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-G 578 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~----~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G 578 (734)
.+..++|.+..+..+++-...+.|...++..+.....+.. .....+..+++.+..++++++-...+.|.+.++. +
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence 4456667665566566666778888888875543332211 1122345667766678888888888999999986 2
Q ss_pred CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-------CCCceeEEEecCCCeEEEE
Q psy8875 579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-------IKWPNGLTLDLVQRRLYWV 651 (734)
Q Consensus 579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-------l~~P~glavD~~~~~LYw~ 651 (734)
......+.........|++.|.. .++.+- +..+.|...++.......++... ......+++.+.+..| ++
T Consensus 239 ~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~-s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~ 315 (380)
T 3iz6_a 239 SRAVRTYHGHEGDINSVKFFPDG-QRFGTG-SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL-FA 315 (380)
T ss_dssp CCCCEEECCCSSCCCEEEECTTS-SEEEEE-CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE-EE
T ss_pred CcceEEECCcCCCeEEEEEecCC-CeEEEE-cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE-EE
Confidence 22222333455678899999854 444454 23466777776544333333211 1235688887655554 45
Q ss_pred eCCCCeEEEEecCCCceEEEEcC--CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875 652 DAKLNEISSCDYNGGNRRLVLYS--PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~~~~i~~~--~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~ 706 (734)
-...+.|...++........+.. .........|++. .+.++++-...+.|...+.
T Consensus 316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 55677888888654443322211 1122234567773 4445555555566655543
No 366
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.51 E-value=0.91 Score=46.55 Aligned_cols=160 Identities=8% Similarity=0.010 Sum_probs=94.8
Q ss_pred CCcceEEEeeeccC--CeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFRT--GMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~~--~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
....+..|+|.+.. +.+.++-...+.|+..++..... ....+......+..|++.+.+..|+ +-...+.|.+.++.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLS 116 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEcC
Confidence 34567889999865 56666666778888888774222 2233333445677888887555555 44456899999998
Q ss_pred CCceEEEEcCCCCCceeEEE--eCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875 578 GTMRKVLVRSYLDEPRSLAL--NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 578 G~~~~~l~~~~l~~P~~iav--D~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
......+. ........+++ .+...+|+... ..+.|...++........+... ...++++.....++.+.. .
T Consensus 117 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~ 189 (368)
T 3mmy_A 117 SNQAIQIA-QHDAPVKTIHWIKAPNYSCVMTGS--WDKTLKFWDTRSSNPMMVLQLP---ERCYCADVIYPMAVVATA-E 189 (368)
T ss_dssp TTEEEEEE-ECSSCEEEEEEEECSSCEEEEEEE--TTSEEEEECSSCSSCSEEEECS---SCEEEEEEETTEEEEEEG-G
T ss_pred CCCceeec-cccCceEEEEEEeCCCCCEEEEcc--CCCcEEEEECCCCcEEEEEecC---CCceEEEecCCeeEEEeC-C
Confidence 76654443 34456788888 65443444443 3467777776543322222211 134555555666665543 3
Q ss_pred CeEEEEecCCCce
Q psy8875 656 NEISSCDYNGGNR 668 (734)
Q Consensus 656 ~~I~~~~~dG~~~ 668 (734)
+.|...++.....
T Consensus 190 ~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 190 RGLIVYQLENQPS 202 (368)
T ss_dssp GCEEEEECSSSCE
T ss_pred CcEEEEEeccccc
Confidence 4566666655433
No 367
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.12 Score=60.35 Aligned_cols=207 Identities=7% Similarity=0.017 Sum_probs=115.0
Q ss_pred CCcceEEEeeeccC-CeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFRT-GMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~~-~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ld 577 (734)
....+.+|+|.+.. +.++.+-...+.|+..++..+.. ....+......+..+++.+.. +.++++-...+.|.+.++.
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 34567789987652 45555656778888888875432 222222234456788888662 5555565667899999886
Q ss_pred CC--ceEEEEcCCCCCceeEEEeCC------------CCeEEEEecCCCceEEEeccCCCce--EEE--EEcCCCCceeE
Q psy8875 578 GT--MRKVLVRSYLDEPRSLALNPI------------DGWMYWSDWGQNAKIERAGMDGSHR--NMV--IVSDIKWPNGL 639 (734)
Q Consensus 578 G~--~~~~l~~~~l~~P~~iavD~~------------~g~LYwtd~~~~~~I~~~~ldG~~~--~~l--v~~~l~~P~gl 639 (734)
.. .....+.........+++.|. .+.++++.. ..+.|...++..... ..+ +...-.....|
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEE
Confidence 55 222333345567788999885 244444432 235565555543321 211 12233446788
Q ss_pred EEecCC--CeEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccC
Q psy8875 640 TLDLVQ--RRLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 640 avD~~~--~~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~ 708 (734)
++.+.. +.++++-...+.|...++..... ..+...........+|++. .+.++++-...+.|...+..+
T Consensus 211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 888663 55555655567787777665421 1121111122234566773 444555555556666555443
No 368
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.42 E-value=0.42 Score=55.85 Aligned_cols=197 Identities=7% Similarity=-0.038 Sum_probs=114.1
Q ss_pred ceEEEeee-ccCCeEEEEEeCCC----cEEEEecCCC-CceEEEEeCCCCCccceeeeccCCcEEEEeCCC----CeEEE
Q psy8875 504 SATAIDFV-FRTGMIFWSDISEK----KIYKAPIDEG-SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK----NTIEL 573 (734)
Q Consensus 504 ~~~~i~~d-~~~~~lyw~d~~~~----~I~~~~l~~g-~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~----~~I~~ 573 (734)
...+++|. +...+|.|+....+ .|+.+++++| ......+. . ...+++..+.++.||++.... .+|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-G--TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-E--ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-C--ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 45667888 87777777654432 4999999866 42111111 0 134566666677788875431 37899
Q ss_pred EeCCCCc--eEEEEcC-CCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCc--e--EEEEEcCCCCceeEEEe-cC
Q psy8875 574 ANFEGTM--RKVLVRS-YLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSH--R--NMVIVSDIKWPNGLTLD-LV 644 (734)
Q Consensus 574 ~~ldG~~--~~~l~~~-~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~--~--~~lv~~~l~~P~glavD-~~ 644 (734)
.++.+.. .+.+... ....-.++++.|...+|+|+.+. ....|+.+++++.. . +.++. ....+ -..+| ..
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~-~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGV-RYDVQMHG 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTC-CEEEEEET
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCc-eEEEeeee
Confidence 9997754 2233322 22233567788888888888653 34689999887642 2 32322 21112 13344 45
Q ss_pred CCeEEEEeC----CCCeEEEEecCC-CceEE-EEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEec
Q psy8875 645 QRRLYWVDA----KLNEISSCDYNG-GNRRL-VLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANK 706 (734)
Q Consensus 645 ~~~LYw~D~----~~~~I~~~~~dG-~~~~~-i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~ 706 (734)
+++|||... ...+|+++++++ ...+. ++.... -....++++++++||++-.. ...|+.++.
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 788888743 345899999875 33333 443211 11234567778888887543 335666664
No 369
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.22 Score=58.25 Aligned_cols=205 Identities=8% Similarity=-0.029 Sum_probs=114.5
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCCCCc
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ldG~~ 580 (734)
..+.+++|++....|+.. ...+.|...++.++....+ .+......+..|++.+.. ++++++-...+.|.+.++.+..
T Consensus 10 ~~V~~l~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp CCEEEECCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred ceeEEEEECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 456788888765554443 4567777777653332222 222233445667765442 5566666667889999887664
Q ss_pred --eEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCC--ceEEEEEcCCCCceeEEEecC----------
Q psy8875 581 --RKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGS--HRNMVIVSDIKWPNGLTLDLV---------- 644 (734)
Q Consensus 581 --~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~--~~~~lv~~~l~~P~glavD~~---------- 644 (734)
..............+++.|. ...|+... ..+.|...++... .....+.........|++.+.
T Consensus 89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred ccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 22233345567789999987 44555544 3467777666544 223333344445677888764
Q ss_pred --CCeEEEEeCCCCeEEEEecCCCc-e-EEEEcCCCCCCCCeEEEEE-C---CEEEEEeCCCCceEEEeccCCC
Q psy8875 645 --QRRLYWVDAKLNEISSCDYNGGN-R-RLVLYSPQTLSHPFSISTF-E---DWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 645 --~~~LYw~D~~~~~I~~~~~dG~~-~-~~i~~~~~~~~~P~gl~v~-~---~~lywtd~~~~~v~~~~~~~G~ 710 (734)
++.++++-...+.|...++.... . ..+...........+|++. . +.++++-...+.|...+..+++
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 24444454556777777765442 1 2221111222334567773 2 4566665555667666655553
No 370
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.40 E-value=0.54 Score=55.22 Aligned_cols=223 Identities=6% Similarity=-0.034 Sum_probs=124.0
Q ss_pred eeeeeeccceEEeecCCCceEEEecC--------CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe---C
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIVNS--------TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE---E 544 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~~~--------~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~---~ 544 (734)
.|.+.....|.+++.....+..+... ...+.+|..|. .+.||+. ...+.|.+++...+........ .
T Consensus 275 ~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~ 352 (795)
T 4a2l_A 275 RLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMWLG-TYFGGLNYYHPIRNRFKNIRNIPYKN 352 (795)
T ss_dssp CEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEEEE-ESSSCEEEECGGGGSSEEECCCTTSS
T ss_pred CEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEEEE-ECCCCeEEeCCCcccceEEcCCCCCC
Confidence 44555445777777665555544321 13567787874 5555544 4456688877653332222111 0
Q ss_pred C--CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC--------CCCCceeEEEeCCCCe-EEEEecCCCc
Q psy8875 545 D--KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS--------YLDEPRSLALNPIDGW-MYWSDWGQNA 613 (734)
Q Consensus 545 ~--~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~--------~l~~P~~iavD~~~g~-LYwtd~~~~~ 613 (734)
. ...+.+|+.| ..++|++... .+.|.+.+......+.+... ......+|+.|+ .|. ||+...+ .
T Consensus 353 ~l~~~~V~~i~~d-~~g~lWiGt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~--~ 427 (795)
T 4a2l_A 353 SLSDNVVSCIVED-KDKNLWIGTN-DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHA--G 427 (795)
T ss_dssp SCSCSSEEEEEEC-TTSCEEEEES-SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETT--T
T ss_pred CCCCCeeEEEEEC-CCCCEEEEEC-CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCc--C
Confidence 1 1235677777 4567777654 34577777765443333211 124567888886 466 7766532 4
Q ss_pred eEEEeccCCCceEEEEEc----CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC--CCCC--CCCeEEE
Q psy8875 614 KIERAGMDGSHRNMVIVS----DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS--PQTL--SHPFSIS 685 (734)
Q Consensus 614 ~I~~~~ldG~~~~~lv~~----~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~--~~~~--~~P~gl~ 685 (734)
.|.+.+......+.+... .......|+.| ..++|+++.. +.|.+++......+.+... ...+ ....+|.
T Consensus 428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPD-GEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp EEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC-SSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC-CCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence 688887765443333211 11245678887 4677877765 5688888765544333221 0111 2345666
Q ss_pred EE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875 686 TF-EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 686 v~-~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.+ .+.||++.. +.|+++++.+++
T Consensus 505 ~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 505 RDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp ECTTCCEEEEES--SCEEEEEEETTE
T ss_pred ECCCCCEEEEeC--CceEEEeCCCCe
Confidence 64 567777765 468888765554
No 371
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=96.40 E-value=0.25 Score=53.53 Aligned_cols=122 Identities=7% Similarity=-0.066 Sum_probs=77.5
Q ss_pred cceEEEeeeccCCeEEE---EEeCCCcEEEEecCCC-----Cce----EEE-EeCCCCCccceeeeccCCcEEEEeCCCC
Q psy8875 503 KSATAIDFVFRTGMIFW---SDISEKKIYKAPIDEG-----SER----TVV-IEEDKTIADGLAVDWIYSHIYWTDAHKN 569 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw---~d~~~~~I~~~~l~~g-----~~~----~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~ 569 (734)
..+.+|+|++....|++ +....+.|+..++..+ ... .+. +......+.+|++.+..++++.+-...+
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 45789999988777776 3334566766665422 110 111 1111345678888877678888877789
Q ss_pred eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875 570 TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626 (734)
Q Consensus 570 ~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~ 626 (734)
.|.+.++...............+..+++.|...+|+... ..+.|...++.|....
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs--~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK--QNGTVVQYLPTLQEKK 227 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE--TTSCEEEECTTCCEEE
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc--CCCcEEEEccCCcccc
Confidence 999999876533322223345788999999866666655 3467888888755443
No 372
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.40 E-value=0.55 Score=54.06 Aligned_cols=208 Identities=9% Similarity=0.000 Sum_probs=116.2
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.....+..|++.+... +..+-...+.|+..++..+.....+ ......+..|++.+.++.|. +-...+.|.+.++.+.
T Consensus 428 ~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 428 GHSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGE 504 (694)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSC
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCC
Confidence 3455678899987554 4455556788888888754433333 33445577888886655554 5455688999988776
Q ss_pred ceEEEEcC---CCCCceeEEEeCCCC-eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875 580 MRKVLVRS---YLDEPRSLALNPIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 580 ~~~~l~~~---~l~~P~~iavD~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
....+... .......+++.|... .++++- +..+.|...++........+.........|++.+.+. ++.+-...
T Consensus 505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~D 582 (694)
T 3dm0_A 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA-SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKD 582 (694)
T ss_dssp EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred cceeeccCCCCCCCcEEEEEEeCCCCcceEEEE-eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCC
Confidence 55544422 233467888887642 234443 2346677777765544444444445567899986554 44454556
Q ss_pred CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+.|...++........+. ......+|++..+..+++-...+.|...+..+++.+..+
T Consensus 583 g~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE---ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp SBCEEEETTTTEEEECCB---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCceEEEec---CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhh
Confidence 778877775443222111 112234555533222222222334555555555444433
No 373
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.38 E-value=0.085 Score=55.30 Aligned_cols=197 Identities=13% Similarity=0.019 Sum_probs=103.5
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC--ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS--ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~--~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
....+.+|+|.+....|+ +-...+.|+..++..+. .....+......+..|++.+....|+... ..+.|.+.+++.
T Consensus 54 h~~~v~~~~~s~~~~~l~-s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 131 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIV-TCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQ 131 (377)
T ss_dssp CSSCEEEEEECTTTCCEE-EEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC--
T ss_pred CCceEEEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECC
Confidence 345678899988655554 44456778887777543 12222222344567788876555555544 467888888876
Q ss_pred Cc----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---------------eEEEEE--cCCCCce
Q psy8875 579 TM----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---------------RNMVIV--SDIKWPN 637 (734)
Q Consensus 579 ~~----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---------------~~~lv~--~~l~~P~ 637 (734)
.. ...+..........|++.|...+|..... .+.|...++.... ...++. .......
T Consensus 132 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 209 (377)
T 3dwl_C 132 ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVH 209 (377)
T ss_dssp ---CCCCEEECSSCCSCEEEEEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEE
T ss_pred cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEE
Confidence 54 33333225567889999986655555543 3455555542110 111221 2233467
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCce-----EEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEec
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-----RLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANK 706 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-----~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~ 706 (734)
.|++.+.+.+|+.+. ..+.|...++..... ..+. .......+|++ ..+.++.+-.. +.++.+..
T Consensus 210 ~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~~ 279 (377)
T 3dwl_C 210 AVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALITVK---LSQLPLRSLLWANESAIVAAGYN-YSPILLQG 279 (377)
T ss_dssp EEEECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCCEE---CSSSCEEEEEEEETTEEEEEESS-SSEEEECC
T ss_pred EEEECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEeec---CCCCceEEEEEcCCCCEEEEEcC-CcEEEEEe
Confidence 889987666666554 456777777665443 2221 11223456777 35565555544 44445543
No 374
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.37 E-value=0.15 Score=49.42 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=90.9
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ 575 (734)
..+...|++++ ++.||-+ ..+.|++.+...+.. .+.+-..+...-..|.+| .++.||.+ ..++|++.+
T Consensus 40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp CTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEES
T ss_pred cccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEEC-CCCCEEEe--CCCEEEEeC
Confidence 55677999999 8999999 678899998753111 233322233445789999 78999999 348999987
Q ss_pred C--CCCc-----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CC------ceEEEEEcCCCCceeEEE
Q psy8875 576 F--EGTM-----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GS------HRNMVIVSDIKWPNGLTL 641 (734)
Q Consensus 576 l--dG~~-----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~------~~~~lv~~~l~~P~glav 641 (734)
. ++.. -.+|....-..-..|+++| .|.||-.. . ++|++...- +. ..+++.......-.=|.+
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d--g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G--QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T--TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C--CcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 6 3322 1234344445668899997 68899887 3 456553332 11 122333222222222444
Q ss_pred ecCCCeEEEEeCCCCeEEEEec
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDY 663 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~ 663 (734)
+ .++.||++. .++|++...
T Consensus 190 ~-~~G~l~~v~--~g~~Y~~~~ 208 (236)
T 1tl2_A 190 S-SVGTLFGVQ--GGKFYEDYP 208 (236)
T ss_dssp C-TTSCEEEEE--TTEEEEESC
T ss_pred C-CCCcEEEEe--CCeEEecCC
Confidence 3 566777777 556776543
No 375
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=96.36 E-value=0.00081 Score=67.57 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=35.3
Q ss_pred cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875 388 GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433 (734)
Q Consensus 388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC 433 (734)
++|||......|. +.|+|++++|.|.|++||.. +++.|.++|+.
T Consensus 4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~G--nG~~C~d~d~P 49 (285)
T 1gl4_A 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG--NGRQCVAEGSP 49 (285)
T ss_dssp ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEE--CSSSEEETTCE
T ss_pred cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCC--CCCcCCCCCCC
Confidence 5789986666786 47999999999999999986 78899998874
No 376
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.36 E-value=0.69 Score=47.93 Aligned_cols=196 Identities=10% Similarity=-0.062 Sum_probs=103.8
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
.+..|+|.+....| .+-...+.|+..++.++... ...+ ......+..|++.+.++.|. +-...+.|.+.++.....
T Consensus 18 ~v~~l~~sp~g~~l-as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLL-ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA-SASFDATTCIWKKNQDDF 95 (345)
T ss_dssp CEEEEEECTTSSCE-EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECCC-E
T ss_pred cEEEEEECCCCCEE-EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE-EEECCCcEEEEEccCCCe
Confidence 56788998855444 45556677777776643321 1222 22334567888886555444 444467777777665432
Q ss_pred E--EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-E--EEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 582 K--VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-N--MVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 582 ~--~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~--~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
. ..+.........|++.|...+|.-... .+.|...+++.... . ..+.........|++.+.+..|..+. ..+
T Consensus 96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~ 172 (345)
T 3fm0_A 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSR--DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDD 172 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTS
T ss_pred EEEEEccCCCCCceEEEEeCCCCEEEEEEC--CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCC
Confidence 2 233344566789999986555554442 35555555543322 1 12223334457788876666555443 445
Q ss_pred eEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEE
Q psy8875 657 EISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKA 704 (734)
Q Consensus 657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~ 704 (734)
.|...++.......+...........+|++. .+.++++-...+.|...
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 6666666554332222111223344567773 34444443334444433
No 377
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=96.34 E-value=0.0017 Score=60.26 Aligned_cols=42 Identities=29% Similarity=0.680 Sum_probs=35.7
Q ss_pred cccccccC-CCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875 388 GVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429 (734)
Q Consensus 388 ~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~ 429 (734)
+++||... ...|++.|.|.+++|+|.|++||.|..++++|++
T Consensus 116 d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp ECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred cCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 56788753 3579999999999999999999999999999974
No 378
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=96.32 E-value=0.011 Score=68.58 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=80.5
Q ss_pred eeccceEEeecCCCceEEEecCCc----ceEEEeeeccCCeEEEEEeC--------CCcEEEEecCCCCceE-EEEeCCC
Q psy8875 480 ARKHDIRKISLDHHEMTAIVNSTK----SATAIDFVFRTGMIFWSDIS--------EKKIYKAPIDEGSERT-VVIEEDK 546 (734)
Q Consensus 480 ~~~~~I~~i~l~~~~~~~l~~~~~----~~~~i~~d~~~~~lyw~d~~--------~~~I~~~~l~~g~~~~-~~~~~~~ 546 (734)
.....|+..++.+.....+..... .+..++|.+..++|.++... .+.|+..+++++.... ..+.
T Consensus 33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--- 109 (719)
T 1z68_A 33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--- 109 (719)
T ss_dssp CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---
T ss_pred cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---
Confidence 345678888888777666654322 26788999888888776532 3678888887543200 1111
Q ss_pred CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC------------------CCceeEEEeCCCCeEEEEe
Q psy8875 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL------------------DEPRSLALNPIDGWMYWSD 608 (734)
Q Consensus 547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l------------------~~P~~iavD~~~g~LYwtd 608 (734)
..+..+++.+.++.|.++. .+.|++.++.+.....+..... ....++++.|...+|+++.
T Consensus 110 ~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 110 RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 3466788888888888875 4689999987655444332211 2225899998877777654
No 379
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.31 E-value=0.12 Score=55.76 Aligned_cols=180 Identities=15% Similarity=0.085 Sum_probs=103.9
Q ss_pred ccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC--CCCccceeeec
Q psy8875 482 KHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED--KTIADGLAVDW 556 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~--~~~p~glAvD~ 556 (734)
+..|+.-++.......++. ....+.+|+|.+..+.++++-...+.|...++.+ .....+.... ......+++.+
T Consensus 141 dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 141 GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS-CEEEEEECCSSCSCCCCCEEEET
T ss_pred CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC-CceeEEeccCCCCccEEEEEECC
Confidence 3456665665444333332 3456789999987677777777788888888874 3333333222 12345677775
Q ss_pred cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEE--cCC
Q psy8875 557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIV--SDI 633 (734)
Q Consensus 557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~--~~l 633 (734)
. +.++++-...+.|.+.++++.....+. .......+|++.|....++.+-.. .+.|...++... ....++. ...
T Consensus 220 ~-~~~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~-d~~v~iwd~~~~~~~~~~~~~~~h~ 296 (435)
T 4e54_B 220 S-SRMVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASV-DQTVKIWDLRQVRGKASFLYSLPHR 296 (435)
T ss_dssp T-TTEEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEET-TSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred C-CCEEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecC-cceeeEEecccccccceEEEeeecc
Confidence 4 455666666789999999886543332 334567899999887777766532 234444343221 1111111 112
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
...+.|++++.+.+|+.+ ...+.|...++...
T Consensus 297 ~~v~~~~~spdg~~l~s~-~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTT-DQKSEIRVYSASQW 328 (435)
T ss_dssp SCEEECCBCTTSSEEEEE-ESSSCEEEEESSSS
T ss_pred ccccceeECCCCCeeEEE-cCCCEEEEEECCCC
Confidence 234677777655555544 34567777776543
No 380
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.30 E-value=1.2 Score=45.82 Aligned_cols=197 Identities=11% Similarity=0.007 Sum_probs=101.7
Q ss_pred cceEEEee-----eccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeE
Q psy8875 503 KSATAIDF-----VFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTI 571 (734)
Q Consensus 503 ~~~~~i~~-----d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I 571 (734)
..+.+|+| .+..+.+..+-...+.|+..++..+.. ....+......+..|++.+. +.+.++-...+.|
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v 100 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTL 100 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcE
Confidence 34566766 333556666666677777766653211 11222223345677888754 4455566667899
Q ss_pred EEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--cCCCCceeEEEecCC----
Q psy8875 572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--SDIKWPNGLTLDLVQ---- 645 (734)
Q Consensus 572 ~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~~l~~P~glavD~~~---- 645 (734)
.+.++........+.........+++.|...+|+-... .+.|...++.+.....+.. ........+++.+..
T Consensus 101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA--EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET--TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC--CCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence 99998654443333345567789999987666665542 3556666665433222110 111233455555433
Q ss_pred -----CeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875 646 -----RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 646 -----~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~ 705 (734)
+.++.+-...+.|...+..+.....+.. .......|++. .+.++++-...+.|...+
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA---HESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred ccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC---ccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 1344444455677776654433333321 12233455552 233333333334444444
No 381
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.26 E-value=1.2 Score=51.24 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=38.2
Q ss_pred CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccc-cCCCcc
Q psy8875 656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQ-THEPLN 726 (734)
Q Consensus 656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~-l~~P~~ 726 (734)
+.|..+++......--+...... .--.++..++.||... ..+.|+.++..+|+.+..+...+. ...|+.
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t 524 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGS-ADGRVIAYAADTGEKLWEQPAASGVMAAPVT 524 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred eeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEEC-CCCcEEEEECCCCccceeeeCCCCcccCceE
Confidence 45777777544322222111111 1113455677888774 457899999999998876653322 235554
No 382
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.23 E-value=0.48 Score=55.54 Aligned_cols=222 Identities=9% Similarity=-0.055 Sum_probs=123.7
Q ss_pred eeeee-ccceEEeecCCCceEEEec----------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE--e
Q psy8875 477 LLFAR-KHDIRKISLDHHEMTAIVN----------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI--E 543 (734)
Q Consensus 477 l~~~~-~~~I~~i~l~~~~~~~l~~----------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~--~ 543 (734)
|.+.. ...|.++......+..+.. ....+.+|..|. .+.||+.. ..+.|++++...+....... .
T Consensus 326 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~ 403 (781)
T 3v9f_A 326 IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGT-DGGGINVFENGKRVAIYNKENRE 403 (781)
T ss_dssp EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEE-BSSCEEEEETTEEEEECC-----
T ss_pred EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEe-CCCcEEEEECCCCeEEEccCCCC
Confidence 44443 5667777665544444321 123467787774 46666553 34568887765221111100 0
Q ss_pred CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC--CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 544 ~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld 621 (734)
.....+.+|+.| ..++||+... .+.|.+.+......+.+... ....+.+|+.|+ .|.||+... ..|.+.+..
T Consensus 404 ~~~~~v~~i~~d-~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~---~Gl~~~~~~ 477 (781)
T 3v9f_A 404 LLSNSVLCSLKD-SEGNLWFGTY-LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH---AGVFVIDLA 477 (781)
T ss_dssp CCCSBEEEEEEC-TTSCEEEEET-TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET---TEEEEEESS
T ss_pred CCCcceEEEEEC-CCCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC---CceEEEeCC
Confidence 112345677777 4577777654 35677877754433333211 234677888886 577877763 468888776
Q ss_pred CCceEEEEEcC-----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCC--CCeEEEEE-CCEEEE
Q psy8875 622 GSHRNMVIVSD-----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLS--HPFSISTF-EDWLYW 693 (734)
Q Consensus 622 G~~~~~lv~~~-----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~--~P~gl~v~-~~~lyw 693 (734)
....+.+.... ...+.+|+.| ..++|+++... +.|.+++.++...+.+... ..+. ...+|..+ .+.||+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQD-SEGRFWIGTFG-GGVGIYTPDMQLVRKFNQY-EGFCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEEC-TTCCEEEEESS-SCEEEECTTCCEEEEECTT-TTCSCSCEEEEEECTTSCEEE
T ss_pred CCeEEecccCcccccccceeEEEEEc-CCCCEEEEEcC-CCEEEEeCCCCeEEEccCC-CCCCCCeeEEEEECCCCCEEE
Confidence 54433333221 2456788888 57778777643 4588888776655444321 2232 23566664 567777
Q ss_pred EeCCCCceEEEeccCCC
Q psy8875 694 SDWQQKAIYKANKFTGD 710 (734)
Q Consensus 694 td~~~~~v~~~~~~~G~ 710 (734)
+.. .+.|+++++.+++
T Consensus 555 ~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 555 ATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EET-TEEEEESCTTTCC
T ss_pred EEC-CCceEEECCCCCc
Confidence 665 3433777765554
No 383
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.23 E-value=1.7 Score=46.55 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=109.4
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV 583 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~ 583 (734)
.+.+++++ +..+++-...+.|+..++..+..... +......+..|++ .+.+.++-...+.|.+.++.......
T Consensus 135 ~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 135 GVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRI-LTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp CEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEE-ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred cEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEE-EcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 45566664 34445555677888888775443333 3222334444554 35566666667899999987555444
Q ss_pred EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE---EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN---MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~---~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
.+.........++++ .+.|+... ..+.|...++...... ..+.........|++ .++.|+.+. ..+.|..
T Consensus 208 ~~~~h~~~v~~l~~~--~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~v 280 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--NGMMVTCS--KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-GDRTIKV 280 (435)
T ss_dssp EECCCCSCEEEEECC--TTEEEEEE--TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-TTSEEEE
T ss_pred EEcCCCCcEEEEEEc--CCEEEEee--CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-CCCeEEE
Confidence 444444556677765 34555444 2456666666543322 222223333455665 355555554 4578888
Q ss_pred EecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 661 CDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 661 ~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.++........+.. .......+++.++.|+... ..+.|...+..+|+.+..+.
T Consensus 281 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 281 WNTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGS-SDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp EETTTCCEEEEEEC--CSSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEEEC
T ss_pred EECCcCcEEEEEcC--CCCcEEEEEeCCCEEEEEe-CCCeEEEEECCCCCEEEEEe
Confidence 88765544333332 2233455666655554444 44677777777776665554
No 384
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.22 E-value=1.2 Score=45.08 Aligned_cols=203 Identities=11% Similarity=-0.017 Sum_probs=103.7
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ldG~~ 580 (734)
......+.+.+....| ++-...+.|...++................+..+++.+.. ..++++-...+.|.+.++....
T Consensus 128 ~~~~~~~~~~~~~~~l-~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp SSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred CCceeEEEEeecCccc-eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 3444555555544444 3444556666666552221111111122334455655444 3455565566788888887665
Q ss_pred eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
....+........+|++.|...+|+-.. ..+.|...++........+. .-.....+++.+.+ ++. +-...+.|..
T Consensus 207 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~-~~~~d~~i~i 281 (340)
T 4aow_A 207 LKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNR-YWL-CAATGPSIKI 281 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSS-SEE-EEEETTEEEE
T ss_pred eeeEecCCCCcEEEEEECCCCCEEEEEe--CCCeEEEEEeccCceeeeec-CCceEEeeecCCCC-cee-eccCCCEEEE
Confidence 5555545556678999998655554443 34667776666543332222 22345666775433 333 3233567777
Q ss_pred EecCCCceEEEEcCC-------CCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875 661 CDYNGGNRRLVLYSP-------QTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGD 710 (734)
Q Consensus 661 ~~~dG~~~~~i~~~~-------~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~ 710 (734)
.++.+......+... .......+|++. .+.++++-...+.|+..+..+|+
T Consensus 282 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 777765433322211 111123456663 34444444444666666656664
No 385
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.21 E-value=0.46 Score=58.71 Aligned_cols=232 Identities=12% Similarity=0.036 Sum_probs=130.7
Q ss_pred eeeeeeccceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA 553 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA 553 (734)
.++.+....|...++......... .....+..++|.+....+ ++-...+.|...++..+.. ...+......+.+++
T Consensus 812 ~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA-VIALSQYCVELWNIDSRLK-VADCRGHLSWVHGVM 889 (1249)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEE-EEECSSSCEEEEETTTTEE-EEEECCCSSCEEEEE
T ss_pred EEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCce-eeecCCCccceEEEE
Confidence 445555666777776554433222 234567788898755544 4545677888888874432 233333445677888
Q ss_pred eeccCCcEEEEeCCCCeEEEEeCCCC------------------------------ceEEEE-------cCCCCCceeEE
Q psy8875 554 VDWIYSHIYWTDAHKNTIELANFEGT------------------------------MRKVLV-------RSYLDEPRSLA 596 (734)
Q Consensus 554 vD~~~~~lY~td~~~~~I~~~~ldG~------------------------------~~~~l~-------~~~l~~P~~ia 596 (734)
+.+.+..|+ +-...+.|.+.++... ....+. .........++
T Consensus 890 ~spdg~~l~-s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 890 FSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp ECTTSSEEE-EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred ECCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 886554444 4444567777664310 000000 01123467888
Q ss_pred EeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC
Q psy8875 597 LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ 676 (734)
Q Consensus 597 vD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~ 676 (734)
+.|...+|..... .+.|...++........+........+|++.+.+..|..+ ...+.|...++.......+. .
T Consensus 969 ~sp~g~~l~~g~~--~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~---~ 1042 (1249)
T 3sfz_A 969 LSPHLEYVAFGDE--DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGDYVFLQ---A 1042 (1249)
T ss_dssp ECTTSSEEEEEET--TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEE-CSSSBEEEEETTTTEEECCB---C
T ss_pred EcCCCCEEEEEcC--CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEE-cCCCEEEEEECCCCceEEEe---c
Confidence 8887777776663 3566666665444333333334456789998666655544 45678888887765443222 1
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 677 TLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 677 ~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
.......+++..+..+++-...+.|...+..+|+....+.
T Consensus 1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A 1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc
Confidence 2233445666444334444445667777777776665554
No 386
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.17 E-value=1.2 Score=51.01 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=48.5
Q ss_pred eEEEecCCCeEEEEeC-----------------------------------CCCeEEEEecCCCceEEEEcCCCCCCCCe
Q psy8875 638 GLTLDLVQRRLYWVDA-----------------------------------KLNEISSCDYNGGNRRLVLYSPQTLSHPF 682 (734)
Q Consensus 638 glavD~~~~~LYw~D~-----------------------------------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~ 682 (734)
++++|+.+++||+... ..+.|..+++......--+... ....-.
T Consensus 385 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~ 463 (668)
T 1kv9_A 385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGG 463 (668)
T ss_dssp CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCC
T ss_pred cceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCc
Confidence 5899999999997421 1155777776543322111111 111123
Q ss_pred EEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875 683 SISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG 717 (734)
Q Consensus 683 gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~ 717 (734)
.++..++.||+.+ ..+.|+.++..+|+.+..+..
T Consensus 464 ~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 464 TLSTAGNLVFQGT-AAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred eeEeCCCEEEEEC-CcccchhhhhhcChhheEecC
Confidence 4566788899885 457899999989988776643
No 387
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.13 E-value=1.6 Score=45.42 Aligned_cols=207 Identities=7% Similarity=-0.089 Sum_probs=115.7
Q ss_pred cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~ 579 (734)
.....+.+|+|.+.. .+..+-...+.|...+...+..... +......+..+++.+. +.++.+-...+.|.+.++...
T Consensus 62 gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHA-VTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCC
T ss_pred CCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceE-EecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEecc
Confidence 344567889998755 4455556678888887764443333 3333445678888865 455556566778887766422
Q ss_pred -------ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC-CCeEEEE
Q psy8875 580 -------MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV-QRRLYWV 651 (734)
Q Consensus 580 -------~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~-~~~LYw~ 651 (734)
....+ .........+++.+...+|+-+.. .+.|...++........+.........+++.+. .+.++++
T Consensus 139 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~--D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 139 KNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASG--DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp TTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred ccccccccceee-eccCCcEEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 11222 223445678888876656655442 356666666543333333333344556777654 3455555
Q ss_pred eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA 714 (734)
Q Consensus 652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~ 714 (734)
-...+.|...++........+.. ......+|++. .+.++++-...+.|...+..+++.+.+
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFET--HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEecC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 55667888888765544333321 22334566663 344445544456666666555544433
No 388
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.13 E-value=0.28 Score=52.45 Aligned_cols=211 Identities=7% Similarity=0.014 Sum_probs=113.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----------eEEEEeCCC------------CCccceeeeccCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----------RTVVIEEDK------------TIADGLAVDWIYS 559 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----------~~~~~~~~~------------~~p~glAvD~~~~ 559 (734)
...+.+|+|++....| .+-...+.|...++..+.. ....+.... ..+..|++.+...
T Consensus 28 ~~~V~~v~~s~~g~~l-a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 28 ADIISTVEFNHSGELL-ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGSEEEEEECSSSSEE-EEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred cCcEEEEEECCCCCEE-EEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 4567888888754444 4444567777777664331 112222222 3466777776542
Q ss_pred -cEEEEeCCCCeEEEEeCCCCce----------------------------------------EEEEcCCCCCceeEEEe
Q psy8875 560 -HIYWTDAHKNTIELANFEGTMR----------------------------------------KVLVRSYLDEPRSLALN 598 (734)
Q Consensus 560 -~lY~td~~~~~I~~~~ldG~~~----------------------------------------~~l~~~~l~~P~~iavD 598 (734)
.++++-...+.|.+.++..... +++..........|++.
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 4555555567787777653221 12223445567899999
Q ss_pred CCCCeEEEEecCCCceEEEeccCC-CceEEEE-------EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce--
Q psy8875 599 PIDGWMYWSDWGQNAKIERAGMDG-SHRNMVI-------VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-- 668 (734)
Q Consensus 599 ~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv-------~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-- 668 (734)
|. +.++.+- . .+.|...++.. .....++ ...-.....|++.+.+..++.+-...+.|...++.....
T Consensus 187 ~~-~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 187 SD-YETYLSA-D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp TT-SSEEEEE-C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred CC-CCEEEEe-C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 85 4444454 2 56777777762 2222221 112234678899876634555555567888888765543
Q ss_pred --EEEEcCCCCC----------CCCeEEEEE-CCEEEEEeCCCCceEEEeccC-CCceEEEec
Q psy8875 669 --RLVLYSPQTL----------SHPFSISTF-EDWLYWSDWQQKAIYKANKFT-GDNLTAITG 717 (734)
Q Consensus 669 --~~i~~~~~~~----------~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~-G~~~~~l~~ 717 (734)
...+...... ....+|++. .+.++.+-.. +.|...+..+ ++.+..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence 2233221100 134567773 3334444333 7777777665 665555543
No 389
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=96.09 E-value=0.002 Score=47.84 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=30.8
Q ss_pred cccCCCCC-CCcccCCCcc-----cCCCCCccccCCCCCccCCCccc
Q psy8875 177 CAAVNGHC-SHLCLPAPQI-----NAHSPKISCACPEGLKLLPDLLM 217 (734)
Q Consensus 177 C~~~~~~C-~~~C~~~~~~-----~~~~~~~~C~C~~G~~~~~~~~~ 217 (734)
|.....+| +.+|+|+++| .+....|+|.|++||.|..|+..
T Consensus 4 c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~ 50 (55)
T 3u7u_G 4 HLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY 50 (55)
T ss_dssp CEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred CcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence 33344556 5799999999 56778899999999999988754
No 390
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=96.08 E-value=0.0029 Score=46.97 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=27.6
Q ss_pred cccccccCCCCCcCcc-----ccCCCcceeecCCCcEecCCCCccc
Q psy8875 388 GVDECAKDNGGCLHKC-----VDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 388 ~~~eC~~~~~~C~~~C-----~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
++|||..++..-...| ++..++|+|.|++|| .|+.|+
T Consensus 7 ~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~----~G~~CE 48 (55)
T 3u7u_G 7 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEF----TGDRCQ 48 (55)
T ss_dssp ECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTE----ESTTSC
T ss_pred cCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCC----cCCCcC
Confidence 6788887665556688 567789999999999 577775
No 391
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.07 E-value=0.88 Score=46.66 Aligned_cols=132 Identities=9% Similarity=0.047 Sum_probs=73.5
Q ss_pred cceEEeecCC--Cce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee--ecc
Q psy8875 483 HDIRKISLDH--HEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV--DWI 557 (734)
Q Consensus 483 ~~I~~i~l~~--~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv--D~~ 557 (734)
..|+..++.. ... ..+......+.+|+|.+....|+ +-...+.|...++..+.... +. .....+..|++ . .
T Consensus 64 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~~~~~~~-~ 139 (368)
T 3mmy_A 64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQAIQ-IA-QHDAPVKTIHWIKA-P 139 (368)
T ss_dssp SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEE-EE-ECSSCEEEEEEEEC-S
T ss_pred CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEcCCCCcee-ec-cccCceEEEEEEeC-C
Confidence 4455555553 232 23333456788999998555555 44567888888887543332 22 23345677777 4 3
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 558 YSHIYWTDAHKNTIELANFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 558 ~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
.++++++-...+.|.+.++.... ...+... . ..+++++....++.+.. ...|...+++...
T Consensus 140 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 140 NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--E--RCYCADVIYPMAVVATA--ERGLIVYQLENQP 201 (368)
T ss_dssp SCEEEEEEETTSEEEEECSSCSSCSEEEECS--S--CEEEEEEETTEEEEEEG--GGCEEEEECSSSC
T ss_pred CCCEEEEccCCCcEEEEECCCCcEEEEEecC--C--CceEEEecCCeeEEEeC--CCcEEEEEecccc
Confidence 45555565567889999886443 3333211 1 33444444556665553 2455555555443
No 392
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.96 E-value=1.8 Score=44.55 Aligned_cols=159 Identities=6% Similarity=-0.031 Sum_probs=93.4
Q ss_pred cceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 503 KSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 503 ~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
..+..|++++. .+.++.+-...+.|...++..+....+........+..+++.+. +.++.+-...+.|.+.++.....
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTS
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCC
Confidence 45788999871 34455555577888888887554422221222234678888864 56666666678999999875544
Q ss_pred E-EEEcC-CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCc---eeEEEecCCCeEEEEeCC
Q psy8875 582 K-VLVRS-YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWP---NGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 582 ~-~l~~~-~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P---~glavD~~~~~LYw~D~~ 654 (734)
. ..+.. .......|++.|...+|..+. . ..|...++........+.. .-..+ ..+++++.+.+|..+...
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-D--QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE 281 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE-S--SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe-C--CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC
Confidence 3 23333 456788999998766666555 2 2666666644322110100 00012 349999777777765554
Q ss_pred CCeEEEEecCC
Q psy8875 655 LNEISSCDYNG 665 (734)
Q Consensus 655 ~~~I~~~~~dG 665 (734)
.+.|...+++.
T Consensus 282 d~~i~v~~~~~ 292 (343)
T 3lrv_A 282 SNSLTIYKFDK 292 (343)
T ss_dssp TTEEEEEEECT
T ss_pred CCcEEEEEEcc
Confidence 56676666643
No 393
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.95 E-value=2.2 Score=48.10 Aligned_cols=160 Identities=11% Similarity=-0.007 Sum_probs=93.4
Q ss_pred CCcceEEEeeeccCCeEEEEEeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
....+.+|+|++....|..+.... +.|+..+ .+..... +......+..+++.+....++.+-...+.|.+.++.
T Consensus 102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~ 178 (611)
T 1nr0_A 102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGN-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 178 (611)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBC-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred cCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcce-ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 345678999998777776654332 2344433 2322211 222334567788887666667777777888888876
Q ss_pred CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEE------cCCCCceeEEEecCCCeEEE
Q psy8875 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIV------SDIKWPNGLTLDLVQRRLYW 650 (734)
Q Consensus 578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~------~~l~~P~glavD~~~~~LYw 650 (734)
.......+.........+++.|. |.++.+-. ..+.|...++. |....++.. .......+|++.+.+.+|.
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspd-g~~las~s-~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~- 255 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPD-GSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA- 255 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTT-SSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-
T ss_pred CCeEeeeeccccCceEEEEECCC-CCEEEEEE-CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE-
Confidence 54433344455567889999986 44554442 23566665543 333222211 1223467889986655554
Q ss_pred EeCCCCeEEEEecCCC
Q psy8875 651 VDAKLNEISSCDYNGG 666 (734)
Q Consensus 651 ~D~~~~~I~~~~~dG~ 666 (734)
+-...+.|...++...
T Consensus 256 s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 256 SASADKTIKIWNVATL 271 (611)
T ss_dssp EEETTSEEEEEETTTT
T ss_pred EEeCCCeEEEEeCCCC
Confidence 4445677888887643
No 394
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.92 E-value=0.0062 Score=47.97 Aligned_cols=38 Identities=39% Similarity=0.787 Sum_probs=29.1
Q ss_pred ccccCcCC-CCCcc--cceeccCCceEEec-CCCeeeCCCCC
Q psy8875 428 IDIDECET-PGSCS--QICLNEKGGFKCEC-VAGYIKDPHHP 465 (734)
Q Consensus 428 ~~~~eC~~-~~~C~--~~C~n~~g~~~C~C-~~gy~~~~~~~ 465 (734)
+|||||.. ...|. ++|+|+.|+|.|.+ ..||.++.++.
T Consensus 1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~ 42 (71)
T 2kl7_A 1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGE 42 (71)
T ss_dssp CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCS
T ss_pred CccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCC
Confidence 37899975 36785 48999999999985 46898876543
No 395
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=95.91 E-value=1.4 Score=47.06 Aligned_cols=209 Identities=9% Similarity=-0.064 Sum_probs=112.6
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CC-ce-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GS-ER-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~-~~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l 576 (734)
...+.+|+|.+..+.++++-...+.|...++.. +. .. ..... ....+..|++.+. +.++++-...+.|.+.++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPN-FDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTT-SSEEEEEETTSEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEe
Confidence 457789999974455666666778888777653 22 11 12222 3345778888864 444555555688888877
Q ss_pred ----CCCceEEEEcC-----------CCCCceeEE--EeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCce
Q psy8875 577 ----EGTMRKVLVRS-----------YLDEPRSLA--LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPN 637 (734)
Q Consensus 577 ----dG~~~~~l~~~-----------~l~~P~~ia--vD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~ 637 (734)
.|.....+... .......++ ..+...+|+... ..+.|...++........+.. ......
T Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 34333222111 112222232 223233333333 346777777755444333333 345678
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-----CCEEEEEeCCCCceEEEeccCCCce
Q psy8875 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-----EDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-----~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
.|++++.+..|+.+. ..+.|...++........+... .......|++. .+.++++-...+.|...+..+++.+
T Consensus 219 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 219 SICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp EEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred EEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 899986655555444 4577888887654332222110 01112344332 2446666666677877787777776
Q ss_pred EEEe
Q psy8875 713 TAIT 716 (734)
Q Consensus 713 ~~l~ 716 (734)
..+.
T Consensus 297 ~~~~ 300 (437)
T 3gre_A 297 YAFI 300 (437)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 396
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.89 E-value=0.098 Score=54.83 Aligned_cols=156 Identities=5% Similarity=-0.112 Sum_probs=81.5
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC-ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc--
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS-ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM-- 580 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~-~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~-- 580 (734)
.+.+++|.+....| .+-...+.|+..++..+. .....+......+..|++.+.+..|+.+ ...+.|.+.++....
T Consensus 13 ~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 13 PSYEHAFNSQRTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC-SQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CCSCCEECSSSSEE-ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEE-ETTSSEEEC------CC
T ss_pred cEEEEEECCCCCEE-EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCce
Confidence 45567777644433 333345666666665331 1111122223456678887665555544 446788888886544
Q ss_pred -eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce---EEEEEc-CCCCceeEEEecCCCeEEEEeCCC
Q psy8875 581 -RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR---NMVIVS-DIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 581 -~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~---~~lv~~-~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
....+.........+++.|...+|+.... .+.|...+++.... ...+.. .-.....|++.+.+..|+.+. ..
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d 167 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-AD 167 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEES--SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SS
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEec--CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CC
Confidence 22333344556789999986666666553 35677766665431 222222 345567889987665555544 34
Q ss_pred CeEEEEecC
Q psy8875 656 NEISSCDYN 664 (734)
Q Consensus 656 ~~I~~~~~d 664 (734)
+.|...++.
T Consensus 168 ~~i~iwd~~ 176 (377)
T 3dwl_C 168 RKAYVLSAY 176 (377)
T ss_dssp SCEEEEEEC
T ss_pred CEEEEEEEE
Confidence 666666653
No 397
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=95.87 E-value=0.0044 Score=57.48 Aligned_cols=51 Identities=29% Similarity=0.647 Sum_probs=40.7
Q ss_pred CCcEecCCCCccccccCcCCC--CCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875 416 EGYKLSSNRHTCIDIDECETP--GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470 (734)
Q Consensus 416 ~G~~l~~~~~~C~~~~eC~~~--~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~ 470 (734)
.||++. ..+.+++||..+ ..|++.|.|+.++|.|.|.+||.+..++++ |++
T Consensus 106 ~GF~~~---y~~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~-C~~ 158 (159)
T 1nzi_A 106 TGFAAY---YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKN-CGV 158 (159)
T ss_dssp CEEEEE---EEEEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSC-EEC
T ss_pred ccceee---eecccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCc-ccc
Confidence 566553 356788999764 579999999999999999999999887666 764
No 398
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.84 E-value=0.61 Score=54.46 Aligned_cols=190 Identities=9% Similarity=0.037 Sum_probs=111.7
Q ss_pred cCCeEEEEEeCCC----cEEEEec---CCCC--ceEEEEeCC-------CCCccceeee-ccCCcEEEEeCCC----CeE
Q psy8875 513 RTGMIFWSDISEK----KIYKAPI---DEGS--ERTVVIEED-------KTIADGLAVD-WIYSHIYWTDAHK----NTI 571 (734)
Q Consensus 513 ~~~~lyw~d~~~~----~I~~~~l---~~g~--~~~~~~~~~-------~~~p~glAvD-~~~~~lY~td~~~----~~I 571 (734)
..+++||+-...+ .++|... + +. ..++++..+ .....++++. +.++.|.|+.... .+|
T Consensus 125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~-~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l 203 (751)
T 2xe4_A 125 YGKYRYYTREVKGKPYKIYCRVFTDKEP-GDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTI 203 (751)
T ss_dssp ETTEEEEEEECTTCCSCEEEEEETTSCT-TCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEE
T ss_pred ECCEEEEEEECCCCceeEEEEEcCCCCC-CCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEE
Confidence 4788898865433 3667765 4 43 456666532 1134456777 7777777765432 249
Q ss_pred EEEeCCCC-ceEEEEcCCCC-CceeEEEeCCCCeEEEEecCC---CceEEEeccCCCce--EEEEEc-CCCCceeEEEec
Q psy8875 572 ELANFEGT-MRKVLVRSYLD-EPRSLALNPIDGWMYWSDWGQ---NAKIERAGMDGSHR--NMVIVS-DIKWPNGLTLDL 643 (734)
Q Consensus 572 ~~~~ldG~-~~~~l~~~~l~-~P~~iavD~~~g~LYwtd~~~---~~~I~~~~ldG~~~--~~lv~~-~l~~P~glavD~ 643 (734)
++.++++. .. +...+. ...+++..|....||++.... ..+|++.++++... +.+... .-.+-.++++.+
T Consensus 204 ~v~dl~~g~~~---l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 204 EFKRISDPSQT---IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EEEETTCTTCC---CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred EEEECCCCCEe---CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 99999876 41 111111 124677877777888876431 24799999977542 333332 222335677888
Q ss_pred CCCeEEEEeC--CCCeEEEEecCCCc--e--EEEEcCCCCCCCCeEEE-EECCEEEEEeC----CCCceEEEeccC
Q psy8875 644 VQRRLYWVDA--KLNEISSCDYNGGN--R--RLVLYSPQTLSHPFSIS-TFEDWLYWSDW----QQKAIYKANKFT 708 (734)
Q Consensus 644 ~~~~LYw~D~--~~~~I~~~~~dG~~--~--~~i~~~~~~~~~P~gl~-v~~~~lywtd~----~~~~v~~~~~~~ 708 (734)
.+.+|+|+.. ....|+.+++++.. . +.+... ....-+.+. ..+++|||... .+.+|++++..+
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 8888888753 34579999988652 3 333321 112224444 34778777643 345788887654
No 399
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.87 Score=54.35 Aligned_cols=200 Identities=7% Similarity=0.009 Sum_probs=116.9
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR- 581 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~- 581 (734)
..+.+|+|++....| .+-...+.|+..+..++ ...........+..|++.+ +.+.++-...+.|.+.++.....
T Consensus 18 ~~V~~lafspdg~~l-Asgs~Dg~I~lw~~~~~--~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLL-AIATVTGEVHIYGQQQV--EVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp SCEEEEEEETTTTEE-EEEETTSEEEEECSTTC--EEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEE
T ss_pred CCcEEEEECCCCCEE-EEEeCCCEEEEEeCCCc--EEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEE
Confidence 467889999865544 44456677887776532 2222222234567888887 44444445578999999865443
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-----------cCCCCceeEEEecCCCeEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-----------SDIKWPNGLTLDLVQRRLYW 650 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-----------~~l~~P~glavD~~~~~LYw 650 (734)
..+. .-.....++++|...+|+.... .+.|...++++.....+.. ........|++.+.++.+..
T Consensus 93 ~~~~--~~~~V~~v~~sp~g~~l~sgs~--dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 93 TTVF--VPGKITSIDTDASLDWMLIGLQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEE--CSSCEEEEECCTTCSEEEEEET--TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred EEEc--CCCCEEEEEECCCCCEEEEEcC--CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 3332 2246789999998888887763 4677777776654321111 11234578888876555555
Q ss_pred EeCCCCeEEEEecCCCceEEEEcCC----------------CCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCce
Q psy8875 651 VDAKLNEISSCDYNGGNRRLVLYSP----------------QTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNL 712 (734)
Q Consensus 651 ~D~~~~~I~~~~~dG~~~~~i~~~~----------------~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~ 712 (734)
+-...+.| ..++........+... .......+|++. .+.++.+-...+.|...+..+|+.+
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 55566778 8787665433333211 001224566663 3455555555566766666666543
No 400
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=95.74 E-value=1.9 Score=43.31 Aligned_cols=204 Identities=9% Similarity=-0.033 Sum_probs=105.8
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
..+..++|++... +..+-...+.|+..++.++.. ....+..-...+..|++.+. .++++.+-...+.|.+.++....
T Consensus 10 ~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 4566788887544 444555677777777763221 11222222334456665432 36677777778899999886542
Q ss_pred --eEEEEcCCCCCceeEEEeCCC-CeEEEEecCCCceEEEeccCCC--ceEEEEEcCCCCceeEEEecCC----------
Q psy8875 581 --RKVLVRSYLDEPRSLALNPID-GWMYWSDWGQNAKIERAGMDGS--HRNMVIVSDIKWPNGLTLDLVQ---------- 645 (734)
Q Consensus 581 --~~~l~~~~l~~P~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG~--~~~~lv~~~l~~P~glavD~~~---------- 645 (734)
....+.........+++.|.. +.++.+-. ..+.|...++... ....++.......+.+++.+..
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 167 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS-SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEE-CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence 222233344567889998862 44444432 2356666655432 1122333333345667776542
Q ss_pred --CeEEEEeCCCCeEEEEecCCCc-eE-EEEcCCCCCCCCeEEEEEC----CEEEEEeCCCCceEEEeccC
Q psy8875 646 --RRLYWVDAKLNEISSCDYNGGN-RR-LVLYSPQTLSHPFSISTFE----DWLYWSDWQQKAIYKANKFT 708 (734)
Q Consensus 646 --~~LYw~D~~~~~I~~~~~dG~~-~~-~i~~~~~~~~~P~gl~v~~----~~lywtd~~~~~v~~~~~~~ 708 (734)
++++++-...+.|...++.... .. .+..-........+|++.. +.++.+-...+.|...+..+
T Consensus 168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 3455555555667776665433 11 1111111223345677743 35555555555555554433
No 401
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.72 E-value=1.9 Score=48.67 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=28.7
Q ss_pred EEEECCEEEEEeCCCCceEEEeccCCCceEEEeccc-ccCCCcc
Q psy8875 684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH-QTHEPLN 726 (734)
Q Consensus 684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~-~l~~P~~ 726 (734)
|+..++.||+... .+.|+.++..+|+.+....... ....|+.
T Consensus 480 ~~tagg~vf~gt~-dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~ 522 (599)
T 1w6s_A 480 MATAGDLVFYGTL-DGYLKARDSDTGDLLWKFKIPSGAIGYPMT 522 (599)
T ss_dssp EEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred eEecCCEEEEECC-CCeEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence 5667888988754 4788999999999877664322 2334544
No 402
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.62 E-value=2.7 Score=48.22 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=97.4
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-----------CCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCce
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-----------TIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMR 581 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-----------~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~ 581 (734)
.++||+... .+.|+.+++..|... ....... ....+++++ .++||+... .++|...+. +|+.+
T Consensus 77 ~g~vyv~~~-~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~~-dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSAS-WSVVHAIDTRTGNRI-WTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAW-DGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECG-GGCEEEEETTTTEEE-EEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEE
T ss_pred CCEEEEECC-CCeEEEEECCCCcEE-EEEcCCCCccccccccccCCCCCceEE--CCEEEEEcC-CCEEEEEECCCCCEE
Confidence 566666643 355666666544321 1111110 112467775 678888754 467888777 45544
Q ss_pred EEEEcC-C----CCCceeEEEeCCCCeEEEEecC----CCceEEEecc-CCCceEEEEEcC--C--------------CC
Q psy8875 582 KVLVRS-Y----LDEPRSLALNPIDGWMYWSDWG----QNAKIERAGM-DGSHRNMVIVSD--I--------------KW 635 (734)
Q Consensus 582 ~~l~~~-~----l~~P~~iavD~~~g~LYwtd~~----~~~~I~~~~l-dG~~~~~lv~~~--l--------------~~ 635 (734)
-.+-.. . .......+|+ .+.||+...+ ..+.|...+. +|..+-.+-... . .|
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 333221 1 0111122232 5777776542 1356666665 344332221110 0 11
Q ss_pred c---------------eeEEEecCCCeEEEEeCCC------------------CeEEEEecCCCceEEEEcCCC------
Q psy8875 636 P---------------NGLTLDLVQRRLYWVDAKL------------------NEISSCDYNGGNRRLVLYSPQ------ 676 (734)
Q Consensus 636 P---------------~glavD~~~~~LYw~D~~~------------------~~I~~~~~dG~~~~~i~~~~~------ 676 (734)
+ ..+++|+..++||+..... ..|..++.+....+-.++...
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 1 3578999999999986431 258888876544433332111
Q ss_pred -CCCCCeEEEE-ECC---EEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 677 -TLSHPFSIST-FED---WLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 677 -~~~~P~gl~v-~~~---~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
....|.-+.+ ..+ .+++.-..++.|+.++..+|+.+..+
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 1233543332 123 33333334567777777777765544
No 403
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.52 E-value=4.2 Score=45.61 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=54.4
Q ss_pred eeEEEeCCCCeEEEEecC-----------------------------------CCceEEEeccC-CCceEEEEEcCCCCc
Q psy8875 593 RSLALNPIDGWMYWSDWG-----------------------------------QNAKIERAGMD-GSHRNMVIVSDIKWP 636 (734)
Q Consensus 593 ~~iavD~~~g~LYwtd~~-----------------------------------~~~~I~~~~ld-G~~~~~lv~~~l~~P 636 (734)
.++|+||.+++||+.... ..+.|...++. |+.+-.+-.. ..+
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~ 466 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAA 466 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCC
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCc
Confidence 468999999999997521 12455555553 3322222111 112
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875 637 NGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~ 696 (734)
.+.++...+++||+.. ..+.|..++.. |+.+-.+.........|... ..++++|++..
T Consensus 467 ~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~-~~~G~~yv~~~ 525 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNFKMPSGGIGSPMTY-SFKGKQYIGSM 525 (571)
T ss_dssp CSBCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEEE
T ss_pred cceeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEE-EECCEEEEEEE
Confidence 3333333578888864 45788888854 44444443332233445432 26788888653
No 404
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.50 E-value=2.1 Score=43.97 Aligned_cols=116 Identities=6% Similarity=-0.062 Sum_probs=71.4
Q ss_pred CCccceeeec-cCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 547 TIADGLAVDW-IYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 547 ~~p~glAvD~-~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
..+..|++.+ ..++++++-...+.|.+.++.......+.. ........+++.|. +.++.+- +..+.|...++....
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg-~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALY-SPDGILDVYNLSSPD 203 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEE-CTTSCEEEEESSCTT
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEE-cCCCEEEEEECCCCC
Confidence 3466788876 145566666667899999987665544432 22335789999985 4454443 234677777775443
Q ss_pred eE-EEEEc-CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 625 RN-MVIVS-DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 625 ~~-~lv~~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
.. ..+.. .......|++.+.+..|..+. .+.|...++...
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~ 245 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKD 245 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSS
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCC
Confidence 32 22222 345567899987776776666 338888887654
No 405
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=95.30 E-value=0.016 Score=64.89 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=11.0
Q ss_pred CCCCCCCCCCcCCCC
Q psy8875 117 DNPDCSDGSDEKSCK 131 (734)
Q Consensus 117 g~~dC~dg~de~~C~ 131 (734)
+...|..|+.+.+|+
T Consensus 279 g~C~C~~G~~G~~Ce 293 (525)
T 4aqs_A 279 GHCMCRHNTKGLNCE 293 (525)
T ss_dssp CEECCCTTEESSSSC
T ss_pred ccccCcCCCcCCCCc
Confidence 445788888888884
No 406
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.13 E-value=2.6 Score=44.54 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=121.2
Q ss_pred eeeeeeccceEEeecCC--CceEEEe--cCCcceEEEeeecc-CCeEEEEEeCCC----cEEEEecCCCCceEEEEeC-C
Q psy8875 476 SLLFARKHDIRKISLDH--HEMTAIV--NSTKSATAIDFVFR-TGMIFWSDISEK----KIYKAPIDEGSERTVVIEE-D 545 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~--~~~~~l~--~~~~~~~~i~~d~~-~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~-~ 545 (734)
.|++.....+.++..+. ...+.+. .....+.+|++|+. .+.||..-. .+ .|++.. ++|..-+.+... .
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~-D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSD-DGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEES-STTSCCEECSBCCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec-CCCCCccEEEeC-CCCCCceECCcccc
Confidence 45555555566665532 4444431 23346788999973 456776543 33 577754 444432222110 1
Q ss_pred C------------CCccceeeecc--CCcEEEEeCCCCeEEEEeCCCCceEEEEcC------------------CCCCce
Q psy8875 546 K------------TIADGLAVDWI--YSHIYWTDAHKNTIELANFEGTMRKVLVRS------------------YLDEPR 593 (734)
Q Consensus 546 ~------------~~p~glAvD~~--~~~lY~td~~~~~I~~~~ldG~~~~~l~~~------------------~l~~P~ 593 (734)
+ ....+|++|+. .+.||..-. .+.|++..-.|..-+.+... ......
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1 12346888864 577777543 36788876666554433210 011235
Q ss_pred eEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEEEcCC-------------CCceeEEEecCC-CeEEEEeCCCCeE
Q psy8875 594 SLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI-------------KWPNGLTLDLVQ-RRLYWVDAKLNEI 658 (734)
Q Consensus 594 ~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l-------------~~P~glavD~~~-~~LYw~D~~~~~I 658 (734)
.|++||. .+.||+... ...|++..-.|..-+.+. ..+ .....|++|+.+ +.||+.. .+.|
T Consensus 181 ~i~~d~~~~~~l~vg~~--~ggl~~s~DgG~tW~~~~-~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl 255 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMS--SGGVFESTDAGTDWKPLN-RGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGI 255 (394)
T ss_dssp EEEECTTCTTCEEEEEE--TBEEEEESSTTSSCEECC-TTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEE
T ss_pred EEEECCCCCCEEEEEEC--CCCEEEECCCCCCceECC-CCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeE
Confidence 8999985 467888753 246888765565443332 111 124678888753 6777765 3467
Q ss_pred EEEecCCCceEEEEcCCCCCCC-----CeEEEEE---CCEEEEEeC------------CCCceEEEeccCCCceEEEe
Q psy8875 659 SSCDYNGGNRRLVLYSPQTLSH-----PFSISTF---EDWLYWSDW------------QQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 659 ~~~~~dG~~~~~i~~~~~~~~~-----P~gl~v~---~~~lywtd~------------~~~~v~~~~~~~G~~~~~l~ 716 (734)
++.+-.|..-+.+.. .+.. .+.|++. .+.||+.-. ....|++- ...|+..+.+.
T Consensus 256 ~~s~D~G~tW~~~~~---~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S-~DgG~tW~~~~ 329 (394)
T 3b7f_A 256 YRMDRREGVWKRIGD---AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVT-RDAGESWQRQD 329 (394)
T ss_dssp EEEETTTTEEECGGG---GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEE-SSTTSCCEEEC
T ss_pred EEeCCCCCcceECCC---CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEE-CCCCCCceECC
Confidence 776654544333321 1222 2456663 467887631 12355554 34566666554
No 407
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=94.98 E-value=0.014 Score=42.92 Aligned_cols=37 Identities=30% Similarity=0.776 Sum_probs=26.4
Q ss_pred ccccccC-CCCCc--Cccc--cCCCcceeecCCCcEecCCCCcccc
Q psy8875 389 VDECAKD-NGGCL--HKCV--DLPVGYMCECNEGYKLSSNRHTCID 429 (734)
Q Consensus 389 ~~eC~~~-~~~C~--~~C~--~~~~~~~C~C~~G~~l~~~~~~C~~ 429 (734)
+++|... ...|. ..|+ +..++|+|.|++|| .|..|+.
T Consensus 3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~----~G~~Ce~ 44 (53)
T 1egf_A 3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGY----SGDRCQT 44 (53)
T ss_dssp ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTC----CSSSSCC
T ss_pred cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCC----cCCcCCc
Confidence 4566543 12454 4798 78899999999999 5777853
No 408
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=94.95 E-value=0.009 Score=40.81 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCcccCCCcccCCCCCccccCCCCCccCCCc
Q psy8875 185 SHLCLPAPQINAHSPKISCACPEGLKLLPDL 215 (734)
Q Consensus 185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~ 215 (734)
+++|.|+.+|.+..++|+|.|++||.|..++
T Consensus 8 ~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 8 SNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp TCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred CCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence 3567777777766688999999999987554
No 409
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=94.90 E-value=0.012 Score=60.09 Aligned_cols=42 Identities=26% Similarity=0.775 Sum_probs=35.2
Q ss_pred cccCcCC--CCCcccceeccCCceEEecCCCeeeCCCCCcccccc
Q psy8875 429 DIDECET--PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA 471 (734)
Q Consensus 429 ~~~eC~~--~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~ 471 (734)
+.|||.. ++.|+|.|.|+.++|.|.|++||.+..+.++ |.+.
T Consensus 1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~s-C~p~ 44 (283)
T 3f1s_B 1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQ-CVPH 44 (283)
T ss_dssp --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSC-EEEC
T ss_pred CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCc-cccc
Confidence 4689975 4899999999999999999999999887766 8764
No 410
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.90 E-value=3.9 Score=41.77 Aligned_cols=224 Identities=9% Similarity=0.037 Sum_probs=107.5
Q ss_pred ccceEEeecCCCce--EEEe-c--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC-----c-eEEEEeCCCCCcc
Q psy8875 482 KHDIRKISLDHHEM--TAIV-N--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS-----E-RTVVIEEDKTIAD 550 (734)
Q Consensus 482 ~~~I~~i~l~~~~~--~~l~-~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~-----~-~~~~~~~~~~~p~ 550 (734)
+..|+..++..... ...+ . ....+.+|+|.+... +..+-...+.|+..++.... . ....+......+.
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 34566666654322 2222 1 234578999998654 44455566777776664211 1 1112222334567
Q ss_pred ceeeeccCCcEEEEeCCCCeEEEEeCC-C-Cc--eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--
Q psy8875 551 GLAVDWIYSHIYWTDAHKNTIELANFE-G-TM--RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-- 624 (734)
Q Consensus 551 glAvD~~~~~lY~td~~~~~I~~~~ld-G-~~--~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-- 624 (734)
.|++.+.+ +++.+-...+.|.+.++. + .. ....+.........|++.|...+|.-... .+.|...++....
T Consensus 112 ~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--D~~i~iW~~~~~~~~ 188 (330)
T 2hes_X 112 GVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY--DDTVRIWKDYDDDWE 188 (330)
T ss_dssp EEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET--TSCEEEEEEETTEEE
T ss_pred EEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC--CCeEEEEECCCCCee
Confidence 88888654 455555557889888884 2 21 12233344556789999986555544443 2444333332221
Q ss_pred eEEEEEcCCCCceeEEEecCC-CeEEEEeCCCCeEEEEecCCC-----ce-EEEEcCCC-CCCCCeEEEEECCEEEEEeC
Q psy8875 625 RNMVIVSDIKWPNGLTLDLVQ-RRLYWVDAKLNEISSCDYNGG-----NR-RLVLYSPQ-TLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 625 ~~~lv~~~l~~P~glavD~~~-~~LYw~D~~~~~I~~~~~dG~-----~~-~~i~~~~~-~~~~P~gl~v~~~~lywtd~ 696 (734)
....+.........+++.+.. +.+..+-...+.|...++.+. .. ..+..... .......|++..+.++++-.
T Consensus 189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~ 268 (330)
T 2hes_X 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG 268 (330)
T ss_dssp EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEe
Confidence 112222333445677887653 333344344455555554322 11 11111111 12234566664444444444
Q ss_pred CCCceEEEeccCC
Q psy8875 697 QQKAIYKANKFTG 709 (734)
Q Consensus 697 ~~~~v~~~~~~~G 709 (734)
..+.|...+..+|
T Consensus 269 ~dg~v~iw~~~~~ 281 (330)
T 2hes_X 269 ADGVLAVYEEVDG 281 (330)
T ss_dssp TTSCEEEEEEETT
T ss_pred CCCEEEEEEcCCC
Confidence 4455555554444
No 411
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=94.82 E-value=0.36 Score=52.27 Aligned_cols=122 Identities=7% Similarity=-0.033 Sum_probs=76.1
Q ss_pred CccceeeeccCCcEEE---EeCCCCeEEEEeCCCC------ce-----EEEEcCCCCCceeEEEeCCCCeEEEEecCCCc
Q psy8875 548 IADGLAVDWIYSHIYW---TDAHKNTIELANFEGT------MR-----KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA 613 (734)
Q Consensus 548 ~p~glAvD~~~~~lY~---td~~~~~I~~~~ldG~------~~-----~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~ 613 (734)
.+..|++.+.++.|++ +-...+.|.+.++... .. ..++......+.+|++.|..+.++.+-.. .+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~-Dg 172 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA-DG 172 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET-TS
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC-CC
Confidence 4678888877777776 5555678888876432 11 11122234568899999986666666532 46
Q ss_pred eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEE
Q psy8875 614 KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLV 671 (734)
Q Consensus 614 ~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i 671 (734)
.|...++............-..+..|++.+.+.+|+.+. ..+.|...++.+...+.+
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEE
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccc
Confidence 676666654422222222234578899988777776665 567888888886554444
No 412
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.81 E-value=4.9 Score=42.53 Aligned_cols=231 Identities=10% Similarity=-0.009 Sum_probs=123.1
Q ss_pred eeeeeeccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL 552 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl 552 (734)
.|.++.+..|+.-++.......+.. ....+.+|+|.+.... +.+-...+.|...++..+..... +... ...-.
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~-lasgs~Dg~v~iWd~~~~~~~~~-~~~h--~~~v~ 193 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRN-MTSH--SARVG 193 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEE-ECCC--SSCEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE-EEEEECCCeEEEEEcCCCcEEEE-EeCC--CCceE
Confidence 3444555666666666555544433 2345789999985544 45555678888888875433222 2222 22333
Q ss_pred eeeccCCcEEEEeCCCCeEEEEeCCCCceEE-EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-e---EE
Q psy8875 553 AVDWIYSHIYWTDAHKNTIELANFEGTMRKV-LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-R---NM 627 (734)
Q Consensus 553 AvD~~~~~lY~td~~~~~I~~~~ldG~~~~~-l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~---~~ 627 (734)
++.|. +.+..+-...+.|...+.......+ .+.........+...+...+|..... .+.|...++.... . ..
T Consensus 194 ~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~--D~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 194 SLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN--DNLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp EEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCEEEEESSCCSSCSCCSE
T ss_pred EEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec--cccceEEeeccccccceeee
Confidence 44443 4555666667788888776544332 33455566778888876655554442 3445444443211 1 11
Q ss_pred EEEcCCCCceeEEEecCCCeEEEEe--CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC-CCCceE
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWVD--AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW-QQKAIY 702 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~D--~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~-~~~~v~ 702 (734)
...........+++.+....++.+- ...+.|...++........+.. ......+.+ .++.|+.+.. ..+.|.
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~ 347 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLV 347 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEE
Confidence 1122233456778877666666543 2346777777665443333321 223444444 3445555432 345566
Q ss_pred EEeccCCCceEEEe
Q psy8875 703 KANKFTGDNLTAIT 716 (734)
Q Consensus 703 ~~~~~~G~~~~~l~ 716 (734)
..+..+++.+..+.
T Consensus 348 iwd~~~~~~v~~l~ 361 (420)
T 4gga_A 348 IWKYPTMAKVAELK 361 (420)
T ss_dssp EEETTTCCEEEEEC
T ss_pred EEECCCCcEEEEEc
Confidence 66666666555553
No 413
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=94.69 E-value=0.022 Score=57.15 Aligned_cols=43 Identities=33% Similarity=0.710 Sum_probs=31.6
Q ss_pred ccccCcCC-CCCcc--cceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875 428 IDIDECET-PGSCS--QICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG 473 (734)
Q Consensus 428 ~~~~eC~~-~~~C~--~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~ 473 (734)
.|+|||.. ...|+ ..|+|+.|+|.|.|.+||.++.. .|.+++.
T Consensus 3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~---~C~d~d~ 48 (285)
T 1gl4_A 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGR---QCVAEGS 48 (285)
T ss_dssp ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSS---SEEETTC
T ss_pred ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCC---cCCCCCC
Confidence 47899974 46786 47999999999999999998654 3888655
No 414
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.53 E-value=4.9 Score=41.27 Aligned_cols=155 Identities=6% Similarity=0.019 Sum_probs=87.5
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
...+.+|+|.+....|. +-...+.|...++..+... ...+......+..|++.+. ++++++-...+.|.+.++....
T Consensus 61 ~~~v~~~~~sp~g~~l~-s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLA-SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp SSCEEEEEECTTSSEEE-EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTS
T ss_pred CCcEEEEEECCCCCEEE-EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCC
Confidence 45678899998655554 4445666666666533322 1223323445678888865 4555555567888888886543
Q ss_pred e---EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE--EEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875 581 R---KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN--MVIVSDIKWPNGLTLDLVQRRLYWVDAKL 655 (734)
Q Consensus 581 ~---~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~--~lv~~~l~~P~glavD~~~~~LYw~D~~~ 655 (734)
. ...+.........+++.|...+|..... .+.|...++...... ..+.........|++++.+.+|..+. ..
T Consensus 139 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D 215 (345)
T 3fm0_A 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DD 215 (345)
T ss_dssp CEEEEEEECCCCSCEEEEEECSSSSCEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred CeEEEEEecCcCCCeEEEEECCCCCEEEEEeC--CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CC
Confidence 2 1233344556788999987666665553 244544444333221 12223344567899987666665544 33
Q ss_pred CeEEEE
Q psy8875 656 NEISSC 661 (734)
Q Consensus 656 ~~I~~~ 661 (734)
+.|...
T Consensus 216 ~~v~iW 221 (345)
T 3fm0_A 216 RTVRIW 221 (345)
T ss_dssp SCEEEE
T ss_pred CeEEEe
Confidence 444433
No 415
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=94.48 E-value=0.016 Score=40.95 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.2
Q ss_pred cccCCCccc--CCCCCccccCCCCCccCCCccc
Q psy8875 187 LCLPAPQIN--AHSPKISCACPEGLKLLPDLLM 217 (734)
Q Consensus 187 ~C~~~~~~~--~~~~~~~C~C~~G~~~~~~~~~ 217 (734)
+|+|+++|. +..++|+|.|++||.|..++..
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 42 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence 688888886 5667899999999999877653
No 416
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.46 E-value=1.9 Score=45.02 Aligned_cols=177 Identities=7% Similarity=-0.019 Sum_probs=96.0
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcE
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~l 561 (734)
..|+..++........+.....+.+|+|.+....|... ..+.+.++....+........ .....+..+++.+.+..|
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~--s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 234 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI--TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL 234 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEE--CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEec--cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence 34666666554444444445567899999866655443 355677766654433222211 122335678887666555
Q ss_pred EEEeCCC-C--eEEEEeCCCCceEE----EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCC
Q psy8875 562 YWTDAHK-N--TIELANFEGTMRKV----LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDI 633 (734)
Q Consensus 562 Y~td~~~-~--~I~~~~ldG~~~~~----l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l 633 (734)
..+.... . .|...++....... .+.........|++.|...+|.... ..+.|...++.... ...+.....
T Consensus 235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs--~D~~V~iwd~~~~~~~~~~~~gH~ 312 (365)
T 4h5i_A 235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS--NDNSIALVKLKDLSMSKIFKQAHS 312 (365)
T ss_dssp EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTEEEEEETTSSS
T ss_pred EEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc--CCCEEEEEECCCCcEEEEecCccc
Confidence 5543322 1 45555554333222 2234455678999998665555544 23566666664322 222222234
Q ss_pred CCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875 634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYN 664 (734)
Q Consensus 634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~d 664 (734)
....+|++.+.+.+ ..+-+..+.|...++.
T Consensus 313 ~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 313 FAITEVTISPDSTY-VASVSAANTIHIIKLP 342 (365)
T ss_dssp SCEEEEEECTTSCE-EEEEETTSEEEEEECC
T ss_pred CCEEEEEECCCCCE-EEEEeCCCeEEEEEcC
Confidence 45688999865544 4455556677766653
No 417
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.46 E-value=5 Score=41.08 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=91.3
Q ss_pred CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
....+..|+|.+.. .+..+-...+.|+..++..+.....+ ......+..|++.+.++.|+ +-...+.|.+.++.+..
T Consensus 75 h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~-s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 75 HNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGEC 151 (343)
T ss_dssp CSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEE-EEETTSCEEEEESSSCE
T ss_pred CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEE-EEcCCCEEEEEeccCCc
Confidence 34567888998754 44456566788888888755443333 33345677888887655554 44456889999887654
Q ss_pred eEEEEc--CCCCCceeEEEeCCCC---------eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEE
Q psy8875 581 RKVLVR--SYLDEPRSLALNPIDG---------WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY 649 (734)
Q Consensus 581 ~~~l~~--~~l~~P~~iavD~~~g---------~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LY 649 (734)
...+.. ........+++.|... .++.+- +..+.|...+..+.... .+.........|++.+.+.+|.
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV-GWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE-ETTSEEEEEETTTEEEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE-cCCCEEEEEcCCCceeE-EEcCccccceEEEECCCCCEEE
Confidence 333221 2233456777766531 233333 22456666665443222 2233344567889986555554
Q ss_pred EEeCCCCeEEEEec
Q psy8875 650 WVDAKLNEISSCDY 663 (734)
Q Consensus 650 w~D~~~~~I~~~~~ 663 (734)
+-...+.|...++
T Consensus 230 -sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 230 -TGGKDKKLLIWDI 242 (343)
T ss_dssp -EEETTCEEEEEES
T ss_pred -EEcCCCeEEEEEC
Confidence 4445677888777
No 418
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.38 E-value=3 Score=43.54 Aligned_cols=195 Identities=7% Similarity=-0.033 Sum_probs=107.5
Q ss_pred ceEEEeeeccCCeEEEEEe-CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCce
Q psy8875 504 SATAIDFVFRTGMIFWSDI-SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMR 581 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~-~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~ 581 (734)
.+..++|.|....|..+.. ..+.|+..++..+..... +. .-..+.+|++.+.+..|..+ . .+.+.+... .|...
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~-~~-~~~~V~~v~fspdg~~l~s~-s-~~~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE-IE-TRGEVKDLHFSTDGKVVAYI-T-GSSLEVISTVTGSCI 210 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE-EE-CSSCCCEEEECTTSSEEEEE-C-SSCEEEEETTTCCEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE-eC-CCCceEEEEEccCCceEEec-c-ceeEEEEEeccCcce
Confidence 3567889887777776654 356777778775433322 33 33457889998766555444 3 344555554 44433
Q ss_pred EEEE-cCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCceEE----EEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875 582 KVLV-RSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSHRNM----VIVSDIKWPNGLTLDLVQRRLYWVDAK 654 (734)
Q Consensus 582 ~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~~~~----lv~~~l~~P~glavD~~~~~LYw~D~~ 654 (734)
.... .......+.+++.|...+|..+..... ..|...++....... .+.........|++.+.+.+|..+. .
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-~ 289 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-N 289 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-T
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-C
Confidence 2222 122334678888886555555432221 244444443333222 1223344567889987666555443 4
Q ss_pred CCeEEEEecCCCc-eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875 655 LNEISSCDYNGGN-RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 655 ~~~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~ 705 (734)
.+.|...++.... .+.++.. ......+|++. .+.+.++-...+.|...+
T Consensus 290 D~~V~iwd~~~~~~~~~~~~g--H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQA--HSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTS--SSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCc--ccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 5678888875443 3333322 23345678884 456666665556665554
No 419
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.23 E-value=5.2 Score=40.49 Aligned_cols=164 Identities=8% Similarity=-0.015 Sum_probs=87.2
Q ss_pred CCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCC
Q psy8875 501 STKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 501 ~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ld 577 (734)
....+.+|+|.+. .+.++.+-...+.|+..++..+.. ....+......+..|++.+.. +.++.+-...+.|.+.++.
T Consensus 56 H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence 3456788888643 355666666778888888775432 222233233456788887653 5666776777888888876
Q ss_pred CCceEEE---EcCCCCCceeEEEeCCC----------------CeEEEEecCCCceEEEeccCCCce-EEE--EEcCCCC
Q psy8875 578 GTMRKVL---VRSYLDEPRSLALNPID----------------GWMYWSDWGQNAKIERAGMDGSHR-NMV--IVSDIKW 635 (734)
Q Consensus 578 G~~~~~l---~~~~l~~P~~iavD~~~----------------g~LYwtd~~~~~~I~~~~ldG~~~-~~l--v~~~l~~ 635 (734)
+.....+ ..........+++.|.. +.++.+-. ..+.|...++..... +.+ +......
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQWKEEQKLEAHSDW 214 (316)
T ss_dssp SSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred CCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec-CCCeEEEEEeCCCCccceeeecccCCCc
Confidence 5432111 11222334556665541 23444432 223333333332211 111 1122334
Q ss_pred ceeEEEecCC---CeEEEEeCCCCeEEEEecCC
Q psy8875 636 PNGLTLDLVQ---RRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 636 P~glavD~~~---~~LYw~D~~~~~I~~~~~dG 665 (734)
.+.|++.+.. +.++.+-+..+.|...+++.
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 5677876554 24555555567777777654
No 420
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=94.21 E-value=0.03 Score=41.14 Aligned_cols=33 Identities=30% Similarity=0.917 Sum_probs=26.0
Q ss_pred cccCcCCC--CCccc--cee--ccCCceEEecCCCeeeC
Q psy8875 429 DIDECETP--GSCSQ--ICL--NEKGGFKCECVAGYIKD 461 (734)
Q Consensus 429 ~~~eC~~~--~~C~~--~C~--n~~g~~~C~C~~gy~~~ 461 (734)
++++|... .+|.+ +|+ +..++|.|.|++||.+.
T Consensus 2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~ 40 (53)
T 1egf_A 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40 (53)
T ss_dssp EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSS
T ss_pred CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCC
Confidence 56777643 46764 798 88899999999999874
No 421
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=94.21 E-value=0.011 Score=54.97 Aligned_cols=31 Identities=19% Similarity=0.609 Sum_probs=25.1
Q ss_pred CccccCCCcceeecCCCcEecCCCCccccccCcCC
Q psy8875 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET 435 (734)
Q Consensus 401 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~ 435 (734)
..|++..++|.|.|++|| .|..|++++||+.
T Consensus 131 g~C~~~~~~~~c~C~~g~----~G~~Ce~~~~c~~ 161 (162)
T 1g1s_A 131 GECLETIGNYTCSCYPGF----YGPECEYVRDDDD 161 (162)
T ss_dssp EEEEECSSSEEEEECTTE----ESTTSCEECC---
T ss_pred CEEecCCCCceEeCCCCC----cCcccccCcccCC
Confidence 479999999999999999 4678999999863
No 422
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=94.19 E-value=0.016 Score=44.43 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=27.6
Q ss_pred ccccCCCCCcCcccc-----CCCcceeecCCCcEecCCCCccc-cccCcC
Q psy8875 391 ECAKDNGGCLHKCVD-----LPVGYMCECNEGYKLSSNRHTCI-DIDECE 434 (734)
Q Consensus 391 eC~~~~~~C~~~C~~-----~~~~~~C~C~~G~~l~~~~~~C~-~~~eC~ 434 (734)
+|..++..-...|++ ..++|+|.|++|| .|..|+ ++++|.
T Consensus 8 ~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf----~G~~Ce~~i~~~~ 53 (63)
T 1hae_A 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF----TGARCTENVPMKV 53 (63)
T ss_dssp HHHHTTSCTTCEEEEEESSSSSCCEEEECCTTE----ESTTSCEECCSSC
T ss_pred CCCCCcCCCCcEEecCCccCCCCCEEEECCCCC----cCCccCcCcCccc
Confidence 454433222347876 6789999999999 577895 677764
No 423
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.91 E-value=10 Score=42.60 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=46.7
Q ss_pred eEEEecCCCeEEEEeCC---------------CCeEEEEecCCCceEEEEcCCC-------CCCCCeEEEE--ECC---E
Q psy8875 638 GLTLDLVQRRLYWVDAK---------------LNEISSCDYNGGNRRLVLYSPQ-------TLSHPFSIST--FED---W 690 (734)
Q Consensus 638 glavD~~~~~LYw~D~~---------------~~~I~~~~~dG~~~~~i~~~~~-------~~~~P~gl~v--~~~---~ 690 (734)
.+++|+..++||+.... ...|..++.+....+-..+... ....|.-+.+ .++ .
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 47899899999998653 2478888877554443333211 1123443333 134 4
Q ss_pred EEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 691 LYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 691 lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
+++.-..++.|+.+++.+|+.+....
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCcEEEEEECCCCCEeeccc
Confidence 55544456777888877777665543
No 424
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.79 E-value=3.6 Score=46.25 Aligned_cols=86 Identities=8% Similarity=-0.012 Sum_probs=51.0
Q ss_pred eEEEecCCCeEEEEeC--------------------------------CCCeEEEEecC-CCceEEEEcCCCCCCCCeEE
Q psy8875 638 GLTLDLVQRRLYWVDA--------------------------------KLNEISSCDYN-GGNRRLVLYSPQTLSHPFSI 684 (734)
Q Consensus 638 glavD~~~~~LYw~D~--------------------------------~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl 684 (734)
++++|+.+++||+... ..+.|..+++. |+.+=.+...... ..-.+
T Consensus 416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~--~~g~~ 493 (582)
T 1flg_A 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL--WAGVL 493 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC--CSCCE
T ss_pred CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC--cccce
Confidence 6788988888888642 13567777764 3322222211111 11235
Q ss_pred EEECCEEEEEeCCCCceEEEeccCCCceEEEecccc-cCCCcc
Q psy8875 685 STFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQ-THEPLN 726 (734)
Q Consensus 685 ~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~-l~~P~~ 726 (734)
+..++.||+... .+.|+.++..+|+.+..+..... ...|+.
T Consensus 494 ~tagglvf~g~~-dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~ 535 (582)
T 1flg_A 494 ATAGNLVFTGTG-DGYFKAFDAKSGKELWKFQTGSGIVSPPIT 535 (582)
T ss_dssp EETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred EeCCCEEEEECC-CCcEEEEECCCCCEEEEecCCCCcccCceE
Confidence 567888888765 47888999889988776654332 234544
No 425
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=93.76 E-value=0.023 Score=43.02 Aligned_cols=35 Identities=23% Similarity=0.644 Sum_probs=28.0
Q ss_pred ccccccCcCCCCCcc----cceeccCCceEEecCCCee-eC
Q psy8875 426 TCIDIDECETPGSCS----QICLNEKGGFKCECVAGYI-KD 461 (734)
Q Consensus 426 ~C~~~~eC~~~~~C~----~~C~n~~g~~~C~C~~gy~-~~ 461 (734)
.|.++|+|.. .+|. .+|+++.++|.|.|++||. +.
T Consensus 7 ~~~~~d~C~s-nPC~nga~gtC~~~~g~y~C~C~~Gy~~G~ 46 (61)
T 2k2s_B 7 LSETPAACSS-NPCGPEAAGTCKETNSGYICRCNQGYRISL 46 (61)
T ss_dssp CTTSCCHHHH-CSSCSSSCCEEEECSSEEEEECCTTEEEEE
T ss_pred hcCCCCcCcC-CCCcCCCccccccCCCceEeECCCCCccCC
Confidence 4667788863 4675 3799999999999999998 64
No 426
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=93.66 E-value=10 Score=44.28 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=122.4
Q ss_pred cceEEeecCCCceEEEecC-------CcceEEEeeeccC-CeEEEEEeC-C----CcEEEEecCCCCceEEEEeCCCC--
Q psy8875 483 HDIRKISLDHHEMTAIVNS-------TKSATAIDFVFRT-GMIFWSDIS-E----KKIYKAPIDEGSERTVVIEEDKT-- 547 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~-------~~~~~~i~~d~~~-~~lyw~d~~-~----~~I~~~~l~~g~~~~~~~~~~~~-- 547 (734)
..|+|-.-.|...+.+... ...+.+|++++.. +.||+.-.. . ..|++. .|+|..-+.+.. .+.
T Consensus 37 ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S-~DgG~TW~~~~~-~~~~~ 114 (789)
T 1sqj_A 37 GGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVS-EDRGQSFTIYES-PFPMG 114 (789)
T ss_dssp SCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEE-SSTTSEEEEEEC-SSCCC
T ss_pred CCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEE-CCCCCcceeccC-CcccC
Confidence 4566655555556655432 2357889998754 566665422 2 566665 465544333321 111
Q ss_pred -------CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC-----CCCCceeEEEeCCCC-eEEEEecCCCce
Q psy8875 548 -------IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS-----YLDEPRSLALNPIDG-WMYWSDWGQNAK 614 (734)
Q Consensus 548 -------~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~-----~l~~P~~iavD~~~g-~LYwtd~~~~~~ 614 (734)
....|+|++....+.|+-.....|++..=.|+.-+.+... .......|++||..+ .||...... ..
T Consensus 115 ~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-~~ 193 (789)
T 1sqj_A 115 ANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-QG 193 (789)
T ss_dssp TTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-TC
T ss_pred ccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-Ce
Confidence 2357999987544444433346677765555554444321 012345788898654 788776421 56
Q ss_pred EEEeccCCCceEEEEE--cCC---------------CCceeEEEecCCCeEEEEe--------CCCCeEEEEecCCCceE
Q psy8875 615 IERAGMDGSHRNMVIV--SDI---------------KWPNGLTLDLVQRRLYWVD--------AKLNEISSCDYNGGNRR 669 (734)
Q Consensus 615 I~~~~ldG~~~~~lv~--~~l---------------~~P~glavD~~~~~LYw~D--------~~~~~I~~~~~dG~~~~ 669 (734)
|++..-.|..-+.+.. ... ..|..|++++..++||.+- ...+.|++..-.|..=+
T Consensus 194 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~ 273 (789)
T 1sqj_A 194 MYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWD 273 (789)
T ss_dssp EEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEE
T ss_pred EEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceE
Confidence 7776544544333210 000 1237888987788999872 24567887765555433
Q ss_pred EEEcCCCC-C-------CC----CeEEEEE---CCEEEEEeCCC------CceEEEeccCCCceEEEe
Q psy8875 670 LVLYSPQT-L-------SH----PFSISTF---EDWLYWSDWQQ------KAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 670 ~i~~~~~~-~-------~~----P~gl~v~---~~~lywtd~~~------~~v~~~~~~~G~~~~~l~ 716 (734)
.+...... + .. -.+|++. .+.||++-... +.|++- ...|+.-+.+.
T Consensus 274 ~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S-~DgG~tW~~~~ 340 (789)
T 1sqj_A 274 DITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLS-TDAGATWKDVT 340 (789)
T ss_dssp ECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEE-SSTTSSEEEHH
T ss_pred ECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEe-cCCCCCceeCc
Confidence 33211110 0 01 1366664 45788765321 466665 34566666554
No 427
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=93.64 E-value=0.01 Score=43.52 Aligned_cols=42 Identities=19% Similarity=0.540 Sum_probs=27.3
Q ss_pred ceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeC
Q psy8875 410 YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKD 461 (734)
Q Consensus 410 ~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~ 461 (734)
++|.|++||. .+.|++.+.|...-....++|.|.|++||.+.
T Consensus 3 ~~C~C~~g~~----------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~ 44 (52)
T 3ca7_A 3 PTYKCPETFD----------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ 44 (52)
T ss_dssp CCBCCCHHHH----------HHTSCTTCEEEEEEETTEEEEEEECCTTEEST
T ss_pred eeeECCCCCc----------CCcCCCCCEEecCccCCCCCEEEECCCCCcCC
Confidence 4689999984 34555544442211113568999999999975
No 428
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.24 E-value=14 Score=42.08 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-----------CCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCce
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-----------TIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMR 581 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-----------~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~ 581 (734)
.++||+... .+.|+.+++..|... ....... ....+++++ .++||+... .++|...+. +|+.+
T Consensus 66 ~g~vyv~~~-~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMS-WSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTL-DGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEG-GGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECT-TSEEEEEETTTCCEE
T ss_pred CCEEEEECC-CCeEEEEECCCChhc-eEECCCCCccccccccccCCccceEEE--CCEEEEEcC-CCEEEEEECCCCCEe
Confidence 566666643 345666666544332 1111111 012456665 577887753 467777775 45543
No 429
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=93.19 E-value=4.3 Score=41.10 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=66.7
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCCc
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGTM 580 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~~ 580 (734)
..+..|+|++... +..+-...+.|+..++..+... ...+......+..|++.+. .++++++-...+.|.+.++....
T Consensus 14 ~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 14 DMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred CeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 3566788887544 4455556777777777643321 1222323344566776432 35666666667889988886532
Q ss_pred --eEEEEcCCCCCceeEEEeCCC-CeEEEEecCCCceEEEeccCC
Q psy8875 581 --RKVLVRSYLDEPRSLALNPID-GWMYWSDWGQNAKIERAGMDG 622 (734)
Q Consensus 581 --~~~l~~~~l~~P~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG 622 (734)
....+.........|++.|.. +.++.+-. ..+.|...++.+
T Consensus 93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs-~D~~i~lwd~~~ 136 (316)
T 3bg1_A 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGS-SDGAISLLTYTG 136 (316)
T ss_dssp CCEEEEECCCSSCCCEEEECCTTTCSCEEEEC-SSSCEEEEEECS
T ss_pred ceEEEEccCCCCceEEEEECCCCCCcEEEEEc-CCCCEEEEecCC
Confidence 222233445567899998863 55555442 235555555544
No 430
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.10 E-value=8.5 Score=39.13 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=82.8
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EE-eC-CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VI-EE-DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG 578 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~-~~-~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG 578 (734)
...+.++++++. +..+-...+.|+..++..+..... .+ .. ....+..|++.+.+ .+..+-...+.|.+.++..
T Consensus 14 ~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 14 KEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp SSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC--
T ss_pred CCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEccc
Confidence 345667777743 555555677788777764332221 22 11 22346678888654 4555555567888887743
Q ss_pred Cc-------eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEE--EEEcCCCCceeEEEecCCCe
Q psy8875 579 TM-------RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNM--VIVSDIKWPNGLTLDLVQRR 647 (734)
Q Consensus 579 ~~-------~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~--lv~~~l~~P~glavD~~~~~ 647 (734)
.. ....+.........|++.|...+|.-... .+.|...+++ +...+. .+.........|++.+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTTSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence 21 11223344556789999986555554442 3555555552 222222 22233345678888765555
Q ss_pred EEEEeCCCCeEEEEecCC
Q psy8875 648 LYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 648 LYw~D~~~~~I~~~~~dG 665 (734)
|. +-...+.|...++..
T Consensus 168 l~-s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 168 LA-SSSYDDTVRIWKDYD 184 (330)
T ss_dssp EE-EEETTSCEEEEEEET
T ss_pred EE-EEcCCCeEEEEECCC
Confidence 44 444455666655543
No 431
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=7.8 Score=46.02 Aligned_cols=176 Identities=9% Similarity=0.007 Sum_probs=103.4
Q ss_pred cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEE
Q psy8875 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIY 562 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY 562 (734)
..|+..+..+............+.+|+|.+ .. +..+-...+.|+..++..+.....+. ....+..+++++....|+
T Consensus 39 g~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~ 114 (902)
T 2oaj_A 39 GEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWML 114 (902)
T ss_dssp SEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEE
T ss_pred CEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEE
Confidence 345555555443333333345678999998 44 44444567888888887554433332 224577889987777776
Q ss_pred EEeCCCCeEEEEeCCCCceEEEE-----------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875 563 WTDAHKNTIELANFEGTMRKVLV-----------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 563 ~td~~~~~I~~~~ldG~~~~~l~-----------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
.... .+.|.+.++.+.....+. .........|+++|..+.++.+-. ..+.| ..++........+..
T Consensus 115 sgs~-dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 115 IGLQ-NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp EEET-TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-SSCEE-EEETTTTEEEEEECC
T ss_pred EEcC-CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe-CCCcE-EEECCCCceEEEEec
Confidence 6654 688999998876542111 123356789999997554544543 34566 666655433222221
Q ss_pred C------------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 632 D------------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 632 ~------------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
. ....+.+++.+.+. ++.+-...+.|...++...
T Consensus 192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTC
T ss_pred ccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC
Confidence 1 13357788876544 4445455677887777543
No 432
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=93.00 E-value=0.057 Score=38.06 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=18.9
Q ss_pred Cccc--cCCCcceeecCCCcEecCCCCccc
Q psy8875 401 HKCV--DLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 401 ~~C~--~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
..|+ +..++|+|.|++|| .|..|+
T Consensus 15 g~C~~~~~~~~~~C~C~~G~----~G~~Ce 40 (45)
T 1a3p_A 15 GVXMHIESLDSYTCNCVIGY----SGDRCQ 40 (45)
T ss_dssp CEEEECTTTSSEEEECCTTE----ETTTTC
T ss_pred CEEEeecCCCCEEEEcCCCC----cCCcCC
Confidence 3676 67889999999999 466774
No 433
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=92.90 E-value=0.022 Score=43.61 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCcccCCCcccC-----CCCCccccCCCCCccCCCcccccc
Q psy8875 185 SHLCLPAPQINA-----HSPKISCACPEGLKLLPDLLMCAE 220 (734)
Q Consensus 185 ~~~C~~~~~~~~-----~~~~~~C~C~~G~~~~~~~~~~~~ 220 (734)
+.+|+|+++|.. ..+.|.|.|++||.|..++...++
T Consensus 11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~ 51 (63)
T 1hae_A 11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM 51 (63)
T ss_dssp HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCc
Confidence 457888888864 456899999999999988766544
No 434
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=92.85 E-value=0.05 Score=38.62 Aligned_cols=23 Identities=30% Similarity=0.794 Sum_probs=18.3
Q ss_pred ccccCC--CcceeecCCCcEecCCCCccc
Q psy8875 402 KCVDLP--VGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 402 ~C~~~~--~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|.+.. ++|.|.|++|| .|..|+
T Consensus 18 ~C~~~~~~~~~~C~C~~Gy----tG~~Ce 42 (46)
T 1k36_A 18 QCIYLVDMSQNYCRCEVGY----TGVRCE 42 (46)
T ss_dssp EEEEETTTTEEEEEECTTC----SSTTSC
T ss_pred EeeccCCCCCEEEECCCCC----ccCCCC
Confidence 677654 68999999999 677775
No 435
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=92.78 E-value=4.6 Score=46.82 Aligned_cols=206 Identities=14% Similarity=0.095 Sum_probs=107.4
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-C-----CCCccceeeeccC-CcEEEEeCC--------C
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-D-----KTIADGLAVDWIY-SHIYWTDAH--------K 568 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-~-----~~~p~glAvD~~~-~~lY~td~~--------~ 568 (734)
++.+|++++.+..+.|+-...+.|+|.. ++|..-+.+... . ......|++|+.. +.||++-.. .
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 6778999887644444444557788876 434433333221 1 1235689999854 678887532 2
Q ss_pred CeEEEEeCCCCceEEEEcC-CC-------CCceeEEEeCCC-CeEEEEecCCCceEEEeccCCCceEEEEEcCCCC----
Q psy8875 569 NTIELANFEGTMRKVLVRS-YL-------DEPRSLALNPID-GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW---- 635 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~-~l-------~~P~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~---- 635 (734)
..|++..=.|+.-+.+... .+ .....|++||.+ +.||.... ....|++..-.|..-+.+ . .+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~-~g~gl~~S~DgG~tW~~~-~-~~~~~~~~ 179 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR-CGNGLWRSTDYGVTWSKV-E-SFPNPGTY 179 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS-TTCCEEEESSTTSSCEEC-T-TCCCCCCC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec-cCCcEEEeCCCCcceecc-c-CCCCCccc
Confidence 4677766556554444321 11 012589999976 56777652 115688765555433322 1 1110
Q ss_pred --------------ceeEEEecCC-------CeEEEEeCCC-CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEE
Q psy8875 636 --------------PNGLTLDLVQ-------RRLYWVDAKL-NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLY 692 (734)
Q Consensus 636 --------------P~glavD~~~-------~~LYw~D~~~-~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~ly 692 (734)
-..|++|+.. ++||++-... ..|++. .||...=..+........|..+++. .+.||
T Consensus 180 ~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S-~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~ 258 (737)
T 2cn3_A 180 IYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRS-TDGGVTWKAVPGQPKGLLPHHGVLASNGMLY 258 (737)
T ss_dssp BSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEE-SSTTSCCEECTTCCCSSEEEEEEECTTSEEE
T ss_pred ccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEE-cCCCCceEECCCCCCcccceEEEECCCCeEE
Confidence 1237777653 4899886433 356664 5544322222211111112333443 67788
Q ss_pred EEeC---------CCCceEEEeccCCCceEEE
Q psy8875 693 WSDW---------QQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 693 wtd~---------~~~~v~~~~~~~G~~~~~l 715 (734)
++-. ..+.|++.+. .|+..+.+
T Consensus 259 ~~~~d~~g~y~~~~~g~v~~s~d-~G~tW~~i 289 (737)
T 2cn3_A 259 ITYGDTCGPYDGNGKGQVWKFNT-RTGEWIDI 289 (737)
T ss_dssp EEEESSCCSSCCSCCEEEEEEET-TTCCEEEC
T ss_pred EEecCCCCccccccCceEEEEeC-CCCCEEEc
Confidence 7531 3456777653 44444443
No 436
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=92.70 E-value=9.1 Score=44.70 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=109.7
Q ss_pred cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC------CCCCccceeeeccC-CcEEEEeCC-C----Ce
Q psy8875 503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE------DKTIADGLAVDWIY-SHIYWTDAH-K----NT 570 (734)
Q Consensus 503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~------~~~~p~glAvD~~~-~~lY~td~~-~----~~ 570 (734)
.++.+|++++....+.|+-...+.|+|.. |+|..-+.+... ......+|++|+.. +.||++-.. . ..
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 46788889887544444444556788765 444433322211 11246689999754 567776532 2 57
Q ss_pred EEEEeCCCCceEEEEcC-CC-------CCceeEEEeCCCC-eEEEEecCCCceEEEeccCCCceEEEEEcC-----CCCc
Q psy8875 571 IELANFEGTMRKVLVRS-YL-------DEPRSLALNPIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSD-----IKWP 636 (734)
Q Consensus 571 I~~~~ldG~~~~~l~~~-~l-------~~P~~iavD~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-----l~~P 636 (734)
|++..=.|..-+.+... .. .....|+|+|.+. .||... ....|++..-.|..-+.+.... -...
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~--~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT--RTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC--SSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe--ccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence 77776556555544321 11 0235799998754 555543 2367887665555444332100 0123
Q ss_pred eeEEEecCC-CeEEEEeCCCCeEEEEecCCCceEEEEcCCCC--------C-------CCCeEEEEE--CCEEEEEe---
Q psy8875 637 NGLTLDLVQ-RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQT--------L-------SHPFSISTF--EDWLYWSD--- 695 (734)
Q Consensus 637 ~glavD~~~-~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~--------~-------~~P~gl~v~--~~~lywtd--- 695 (734)
..|++|+.+ +.||++-.....|++..=.|..=+.+...+.. + ..|..|++. .+.||.+-
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~ 251 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADY 251 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecC
Confidence 467787654 57888765435666643333333322211110 1 122566663 78888872
Q ss_pred -----CCCCceEEEeccCCCceEEE
Q psy8875 696 -----WQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 696 -----~~~~~v~~~~~~~G~~~~~l 715 (734)
...+.|++.. ..|+.-+.+
T Consensus 252 ~~p~~g~~g~l~~S~-DgG~tW~~~ 275 (789)
T 1sqj_A 252 PGPWGVTFGEVWRQN-RTSGAWDDI 275 (789)
T ss_dssp CSSSCCCCCCEEEEE-TTTCCEEEC
T ss_pred CCCCCCCCceEEEEe-CCCCceEEC
Confidence 2345676654 344444433
No 437
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=92.67 E-value=11 Score=39.40 Aligned_cols=181 Identities=7% Similarity=-0.151 Sum_probs=85.6
Q ss_pred ccceEEeecCC-CceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----------------
Q psy8875 482 KHDIRKISLDH-HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE----------------- 543 (734)
Q Consensus 482 ~~~I~~i~l~~-~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~----------------- 543 (734)
+..|+.-++.. .....+......+.+|+|+|....++.+-...+.|+..++..+........
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 34455555532 233344444567789999987777777777778888877764432111100
Q ss_pred -------CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc------------------CCCCCceeEEEe
Q psy8875 544 -------EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR------------------SYLDEPRSLALN 598 (734)
Q Consensus 544 -------~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~------------------~~l~~P~~iavD 598 (734)
........+++....++..++-...++|.+.++........+. .......+....
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 0111223344333344455555556667666654322111000 011122233344
Q ss_pred CCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 599 PIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 599 ~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
+..+.+|.+-.+..+.|...++... ....+. ..-.....|++.+.+.+|-.+. .+.|..+++.|
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~g 389 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG 389 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence 4445555554334466666665433 233332 2223456788877666665443 34555555544
No 438
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=92.39 E-value=0.032 Score=40.99 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=27.4
Q ss_pred CCcccCCCccc--CCCCCccccCCCCCccCCCccc
Q psy8875 185 SHLCLPAPQIN--AHSPKISCACPEGLKLLPDLLM 217 (734)
Q Consensus 185 ~~~C~~~~~~~--~~~~~~~C~C~~G~~~~~~~~~ 217 (734)
+.+|+|+++|. +..+.|.|.|++||.|..|+..
T Consensus 11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~ 45 (53)
T 1nql_B 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45 (53)
T ss_dssp CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence 45789998887 6667899999999999887654
No 439
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=92.31 E-value=1.1 Score=50.35 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=68.1
Q ss_pred CCCCccceeeeccCCcEEEEeCC---------------------CCeEEEEeCCCCc-------eEEEE-c---------
Q psy8875 545 DKTIADGLAVDWIYSHIYWTDAH---------------------KNTIELANFEGTM-------RKVLV-R--------- 586 (734)
Q Consensus 545 ~~~~p~glAvD~~~~~lY~td~~---------------------~~~I~~~~ldG~~-------~~~l~-~--------- 586 (734)
.+..|++|++++.++.||++-.. .+.|++...++.. ..+++ .
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 46689999999999999999653 2578888764321 11222 1
Q ss_pred -----------CCCCCceeEEEeCCCCeEEEEecCC-----------CceEEEeccC-CCceEEEEEcCCCCceeEEEec
Q psy8875 587 -----------SYLDEPRSLALNPIDGWMYWSDWGQ-----------NAKIERAGMD-GSHRNMVIVSDIKWPNGLTLDL 643 (734)
Q Consensus 587 -----------~~l~~P~~iavD~~~g~LYwtd~~~-----------~~~I~~~~ld-G~~~~~lv~~~l~~P~glavD~ 643 (734)
..+..|..|++|+. |.||+..-+. +..++..... |..++.+....-....|+++.+
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence 12678999999985 5677765332 2355666554 4333333222234567888888
Q ss_pred CCCeEEEEe
Q psy8875 644 VQRRLYWVD 652 (734)
Q Consensus 644 ~~~~LYw~D 652 (734)
..++||+.-
T Consensus 541 Dg~tlfvni 549 (592)
T 3zwu_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 888888773
No 440
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.66 E-value=14 Score=42.70 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=112.6
Q ss_pred ceeeeeeccceEEeecCCCceEEEec-------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC---CceEEE---
Q psy8875 475 ASLLFARKHDIRKISLDHHEMTAIVN-------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---SERTVV--- 541 (734)
Q Consensus 475 ~~l~~~~~~~I~~i~l~~~~~~~l~~-------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g---~~~~~~--- 541 (734)
..|.+.....|.+++.....+..+.. ....+.+|..|. .+.||+. ...+.|++++.... ......
T Consensus 384 g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWig-T~~~Gl~~~~~~~~~~~~~~~~~~~~ 461 (758)
T 3ott_A 384 QQLWIATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLWIS-TCLGGIFVVDKHKLMQSTSGQYIAEQ 461 (758)
T ss_dssp SCEEEEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEEEE-ESSSCEEEEEHHHHHHCCSSEEECSE
T ss_pred CCEEEEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEEEE-ECCCceEEEccccccccCCcceeccc
Confidence 34555555678887776655544321 112356666663 4566554 34456777765410 001111
Q ss_pred -E--eCCC--CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC---CCceeEEEeCCCCeEEEEecCCCc
Q psy8875 542 -I--EEDK--TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL---DEPRSLALNPIDGWMYWSDWGQNA 613 (734)
Q Consensus 542 -~--~~~~--~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l---~~P~~iavD~~~g~LYwtd~~~~~ 613 (734)
. ..++ ..+..|..| ..++|+++....+.|.+.+......+.+....+ ..+.+|..|. .|.|+++.. .
T Consensus 462 ~~~~~~~l~~~~i~~i~~d-~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~lWigt~---~ 536 (758)
T 3ott_A 462 NYSVHNGLSGMFINQIIPD-NEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDE-DGLLWVGFH---G 536 (758)
T ss_dssp EECGGGTCSCSCEEEEEEC-TTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECT-TSCEEEEET---T
T ss_pred ccccccccccceeeeEEEc-CCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECC-CCCEEEEec---C
Confidence 1 1122 135667778 456777633333568888876554444432222 3567888884 688888762 3
Q ss_pred eEEEeccCCCceEEEEEcCC--CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECC
Q psy8875 614 KIERAGMDGSHRNMVIVSDI--KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FED 689 (734)
Q Consensus 614 ~I~~~~ldG~~~~~lv~~~l--~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~ 689 (734)
.|.+.+......+.+....+ ....+|..| .++|+++. .+.|.+++......+........+ .+..+ .++
T Consensus 537 Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~--~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G 609 (758)
T 3ott_A 537 GVMRINPKDESQQSISFGSFSNNEILSMTCV--KNSIWVST--TNGLWIIDRKTMDARQQNMTNKRF---TSLLFDPKED 609 (758)
T ss_dssp EEEEECC--CCCCBCCCCC---CCEEEEEEE--TTEEEEEE--SSCEEEEETTTCCEEEC--CCCCC---SEEEEETTTT
T ss_pred ceEEEecCCCceEEecccCCCccceEEEEEC--CCCEEEEC--CCCeEEEcCCCceeEEecCCCCce---eeeEEECCCC
Confidence 57777765433222211112 234566554 78888776 346888887654433321111111 13333 368
Q ss_pred EEEEEeCCCCceEEEecc
Q psy8875 690 WLYWSDWQQKAIYKANKF 707 (734)
Q Consensus 690 ~lywtd~~~~~v~~~~~~ 707 (734)
.||+.-. +.+.++++.
T Consensus 610 ~l~fG~~--~Gl~~f~p~ 625 (758)
T 3ott_A 610 CVYLGGA--DGFGISHSN 625 (758)
T ss_dssp EEEEECB--SEEEEEEC-
T ss_pred cEEEecC--CceEEEChh
Confidence 8888753 356666653
No 441
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=91.55 E-value=8.2 Score=44.87 Aligned_cols=161 Identities=10% Similarity=0.052 Sum_probs=91.0
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-C----------CCCCccceeeeccC-CcEEEEeCC--
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-E----------DKTIADGLAVDWIY-SHIYWTDAH-- 567 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~----------~~~~p~glAvD~~~-~~lY~td~~-- 567 (734)
..++.+|++++....++|+-...+.|+|.. ++|..-+.+.. . .......|++|+.+ +.||.+...
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence 457788999988765555555667788765 54443222221 1 12345679999854 667775531
Q ss_pred ----CCeEEEEeCCCCceEEEEcC-CC-----CCc--eeEEEeCCC-CeEEEEecCCCceEEEeccCCCceEEEEEcCCC
Q psy8875 568 ----KNTIELANFEGTMRKVLVRS-YL-----DEP--RSLALNPID-GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIK 634 (734)
Q Consensus 568 ----~~~I~~~~ldG~~~~~l~~~-~l-----~~P--~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~ 634 (734)
...|++..=.|+.-+.+... .. ... ..|+|+|.+ +.||... ....|++..-.|..-+.+. .+.
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~--~~~~l~~S~DgG~TW~~~~--~~~ 174 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS--RTQGLWRSTDRAQTWSRMN--QLP 174 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC--SSSCEEEESSTTSSCEECT--TSC
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe--CCCcEEEECCCCcCccccc--cCc
Confidence 35677766556554444321 11 111 369999875 6677764 2357887755454433322 111
Q ss_pred -------CceeEEEecCC-CeEEEEeCCCCeEEEEecCCCc
Q psy8875 635 -------WPNGLTLDLVQ-RRLYWVDAKLNEISSCDYNGGN 667 (734)
Q Consensus 635 -------~P~glavD~~~-~~LYw~D~~~~~I~~~~~dG~~ 667 (734)
....|++|+.+ ++||++-...+.|++..=.|..
T Consensus 175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~t 215 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGAN 215 (763)
T ss_dssp CCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSS
T ss_pred ccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCC
Confidence 13457788654 5788886543356654433443
No 442
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=91.25 E-value=1.8 Score=48.49 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=69.7
Q ss_pred CCcceEEEeeeccCCeEEEEEeC---------------------CCcEEEEecCCCCc------eEEEE-e---------
Q psy8875 501 STKSATAIDFVFRTGMIFWSDIS---------------------EKKIYKAPIDEGSE------RTVVI-E--------- 543 (734)
Q Consensus 501 ~~~~~~~i~~d~~~~~lyw~d~~---------------------~~~I~~~~l~~g~~------~~~~~-~--------- 543 (734)
.+.++.++++++.++.||++-.. .+.|+|+..+.+.. -.+++ .
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 46689999999999999998542 25688887653321 11221 1
Q ss_pred -----------CCCCCccceeeeccCCcEEEEeCC------------CCeEEEEeCC-CCceEEEEcCCCCCceeEEEeC
Q psy8875 544 -----------EDKTIADGLAVDWIYSHIYWTDAH------------KNTIELANFE-GTMRKVLVRSYLDEPRSLALNP 599 (734)
Q Consensus 544 -----------~~~~~p~glAvD~~~~~lY~td~~------------~~~I~~~~ld-G~~~~~l~~~~l~~P~~iavD~ 599 (734)
..+..|.+|+||+. ++||+..-+ +..+...... |..++.+.........|+++.|
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence 12567999999965 556665432 2456666654 5555555544456778888888
Q ss_pred CCCeEEEEe
Q psy8875 600 IDGWMYWSD 608 (734)
Q Consensus 600 ~~g~LYwtd 608 (734)
....||+.-
T Consensus 541 Dg~tlfvni 549 (592)
T 3zwu_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 777787764
No 443
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=90.89 E-value=0.31 Score=40.55 Aligned_cols=58 Identities=22% Similarity=0.501 Sum_probs=46.8
Q ss_pred Ccccc-CCCcceeecCCCcEecCCCCccccccC-cC-CCCCcc--cceeccC-CceEEecCCCeee
Q psy8875 401 HKCVD-LPVGYMCECNEGYKLSSNRHTCIDIDE-CE-TPGSCS--QICLNEK-GGFKCECVAGYIK 460 (734)
Q Consensus 401 ~~C~~-~~~~~~C~C~~G~~l~~~~~~C~~~~e-C~-~~~~C~--~~C~n~~-g~~~C~C~~gy~~ 460 (734)
+.|.. .++..+|.|..||+. ++..|..+++ |+ +++.|. +.|+.+. .-..|.|.++|.-
T Consensus 22 A~C~r~~~G~e~CrCl~gY~~--dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~~ 85 (105)
T 1n1i_A 22 AACYRYLDGTEEWRCLLGFKE--VGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSE 85 (105)
T ss_dssp EEEEECTTSCEEEEECTTEEE--CSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTCC
T ss_pred CCeEECCCCCEeEEEECCeec--cCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCCc
Confidence 35777 688999999999988 6889988888 75 458886 4888885 7789999999754
No 444
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=90.41 E-value=29 Score=39.67 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=33.0
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875 640 TLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 640 avD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~ 696 (734)
++....+.||... ..+.|+.++.. |+.+-.+.........|+.. ...++.|++-.
T Consensus 481 ~~~tagglvf~gt-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty-~~~G~qyv~~~ 536 (689)
T 1yiq_A 481 TLSTAGNLVFEGS-ADGRVIAYAADTGEKLWEQPAASGVMAAPVTY-SVDGEQYVTFM 536 (689)
T ss_dssp EEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEEE
T ss_pred cceECCCEEEEEC-CCCcEEEEECCCCccceeeeCCCCcccCceEE-EECCEEEEEEE
Confidence 4445678888874 56788888865 44444443333334456433 26778888743
No 445
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=90.20 E-value=0.07 Score=37.85 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=22.8
Q ss_pred CcccCCCcccCC--CCCccccCCCCCccCCCcc
Q psy8875 186 HLCLPAPQINAH--SPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 186 ~~C~~~~~~~~~--~~~~~C~C~~G~~~~~~~~ 216 (734)
.+|+| ++|.+. .+.|.|.|++||.|..++.
T Consensus 12 ~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp SSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred CCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence 57888 577643 3578999999999987654
No 446
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.07 E-value=32 Score=39.63 Aligned_cols=210 Identities=8% Similarity=-0.013 Sum_probs=106.9
Q ss_pred cceeeeeeccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCC--CCCc
Q psy8875 474 HASLLFARKHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EED--KTIA 549 (734)
Q Consensus 474 ~~~l~~~~~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~--~~~p 549 (734)
...|.+.....+.+++.....+..... ....+..+.. ..+.||+... +.|++++...+....... ... ...+
T Consensus 73 ~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~--~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i 148 (758)
T 3ott_A 73 NTYLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL--QGDTLWLGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTI 148 (758)
T ss_dssp TTEEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE--ETTEEEEEET--TEEEEEETTTCCEEEECHHHHCCSCSCE
T ss_pred CCcEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe--cCCcEEEEcC--CcceeEeCCCCeEEEeccCCCCcCCCeE
Confidence 345666666677777765443322111 1123444433 3677776642 378888876433222100 011 1235
Q ss_pred cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC-----CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY-----LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH 624 (734)
Q Consensus 550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-----l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~ 624 (734)
..|+.| ..++||+... +.|.+.+......+.+.... ......|..|...+.||+... ..|.+.+.....
T Consensus 149 ~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~---~Gl~~~~~~~~~ 222 (758)
T 3ott_A 149 YSIIRT-KDNQIYVGTY--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE---GYLFQYFPSTGQ 222 (758)
T ss_dssp EEEEEC-TTCCEEEEET--TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE---EEEEEEETTTTE
T ss_pred EEEEEc-CCCCEEEEeC--CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC---CCCeEEcCCCCe
Confidence 567777 4677877654 45777776654433322111 112567888876666666542 357777765433
Q ss_pred eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC---CCCCC--CeEEEEE-CCEEEEEeC
Q psy8875 625 RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP---QTLSH--PFSISTF-EDWLYWSDW 696 (734)
Q Consensus 625 ~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~---~~~~~--P~gl~v~-~~~lywtd~ 696 (734)
.+.+....-.....|+.| ..+.|+++.. +.|.+++......+.+.... ..+.. ..+|..+ ++.||+...
T Consensus 223 ~~~~~~l~~~~i~~i~~d-~~g~lWigT~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALD-GNGDLLAGTD--NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EEEEEEEEEEEEEEEEEC-TTCCEEEEET--TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred EEeccCCCCCeEEEEEEc-CCCCEEEEeC--CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 222211111224567777 5677777652 46888777655444443211 11222 2344443 456666553
No 447
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=89.95 E-value=32 Score=39.58 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=122.6
Q ss_pred ccceEEeecCCCceEEEecC-------CcceEEEeeecc-CCeEEEEEeC--------CCcEEEEecCCCCceEEEEeC-
Q psy8875 482 KHDIRKISLDHHEMTAIVNS-------TKSATAIDFVFR-TGMIFWSDIS--------EKKIYKAPIDEGSERTVVIEE- 544 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~l~~~-------~~~~~~i~~d~~-~~~lyw~d~~--------~~~I~~~~l~~g~~~~~~~~~- 544 (734)
...|+|..-.|...+.+... ...+.+|++|+. .+.||++-.. ...|+|. .|+|..-+.+...
T Consensus 44 ~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S-~DgG~TW~~~~~~~ 122 (737)
T 2cn3_A 44 IGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRS-TDRGETWEKTILPF 122 (737)
T ss_dssp SSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEE-SSSSSSCEEEECSS
T ss_pred CCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEe-CCCCCCcccCCCCc
Confidence 45677776666666665432 234778999984 4688877521 2456665 4655543333221
Q ss_pred CC-------CCccceeeeccC-CcEEEEeCCCCeEEEEeCCCCceEEEEcCC-C---------------CCceeEEEeCC
Q psy8875 545 DK-------TIADGLAVDWIY-SHIYWTDAHKNTIELANFEGTMRKVLVRSY-L---------------DEPRSLALNPI 600 (734)
Q Consensus 545 ~~-------~~p~glAvD~~~-~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-l---------------~~P~~iavD~~ 600 (734)
.+ .....|++|+.. +.||........|++..=.|..-+.+.... . .....|++||.
T Consensus 123 ~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~ 202 (737)
T 2cn3_A 123 KMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKS 202 (737)
T ss_dssp CCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGG
T ss_pred ccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCC
Confidence 11 012579999876 556665422256776554454443332100 0 01234888876
Q ss_pred C-------CeEEEEecCCCceEEEeccCCCceEEEEEcCC---CCceeEEEecCCCeEEEEeC---------CCCeEEEE
Q psy8875 601 D-------GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI---KWPNGLTLDLVQRRLYWVDA---------KLNEISSC 661 (734)
Q Consensus 601 ~-------g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l---~~P~glavD~~~~~LYw~D~---------~~~~I~~~ 661 (734)
. +.||.+.......|++..-.|..-+ .+. .+ ..|.-+++++ .+.||++-. ..+.|++.
T Consensus 203 ~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~-~~~-~~p~~~~~~~~~~~~-~~~l~~~~~d~~g~y~~~~~g~v~~s 279 (737)
T 2cn3_A 203 SSTPGNPTKTIYVGVADKNESIYRSTDGGVTWK-AVP-GQPKGLLPHHGVLAS-NGMLYITYGDTCGPYDGNGKGQVWKF 279 (737)
T ss_dssp GSCTTSCCSCEEEEESCSSCCEEEESSTTSCCE-ECT-TCCCSSEEEEEEECT-TSEEEEEEESSCCSSCCSCCEEEEEE
T ss_pred CcccCCCCCEEEEEecCCCccEEEEcCCCCceE-ECC-CCCCcccceEEEECC-CCeEEEEecCCCCccccccCceEEEE
Confidence 4 3788876433346888743344333 222 22 1234456664 778887631 34578888
Q ss_pred ecCCCceEEEEcCCCC-CCCCe---EEEE---ECCEEEEEeCC----CCceEEEeccCCCceEEE
Q psy8875 662 DYNGGNRRLVLYSPQT-LSHPF---SIST---FEDWLYWSDWQ----QKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 662 ~~dG~~~~~i~~~~~~-~~~P~---gl~v---~~~~lywtd~~----~~~v~~~~~~~G~~~~~l 715 (734)
+-.|..-+.+...+.. ...++ +|++ ..+.||+.... ...|++- ...|+.-+.+
T Consensus 280 ~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~l~~S-~DgG~tW~~~ 343 (737)
T 2cn3_A 280 NTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEYIFRS-TDGGATWKNI 343 (737)
T ss_dssp ETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEECCCSSCCCEEEE-SSTTSSCEES
T ss_pred eCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEecccCCCCccEEEe-CCCCccccch
Confidence 7666655544322110 01233 3666 34788887643 2446654 4566666655
No 448
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=89.81 E-value=22 Score=37.37 Aligned_cols=221 Identities=8% Similarity=-0.018 Sum_probs=122.5
Q ss_pred ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875 482 KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH 560 (734)
Q Consensus 482 ~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~ 560 (734)
+..|+..++....... +......+.+++++ +.+..+-...+.|+..+..........+........++++.+.+.
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~- 243 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR- 243 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-
T ss_pred CCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-
Confidence 3445555554433322 22233455666665 344555556677777766543333333444445566777775544
Q ss_pred EEEEeCCCCeEEEEeCCCCce----EEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCC
Q psy8875 561 IYWTDAHKNTIELANFEGTMR----KVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKW 635 (734)
Q Consensus 561 lY~td~~~~~I~~~~ldG~~~----~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~ 635 (734)
+.++-...+.|.+.++..... .............+++.|..+.++.+-.+ ..+.|...++........+. .-..
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~ 322 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ 322 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSC
T ss_pred eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccc
Confidence 444444567777777643221 11222334556788998888887776543 33567666665443333332 2345
Q ss_pred ceeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875 636 PNGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G 709 (734)
+..+++.+..+.|+.+-. ..+.|...++........+.+ ....-.+|++. .+.+++|-...+.|..-+.++.
T Consensus 323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 677888888888887754 457888888765544433432 23345677774 4555555555555555454443
No 449
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=89.71 E-value=0.31 Score=44.99 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=13.6
Q ss_pred CCccc-cCCCCCccCCCcc
Q psy8875 199 PKISC-ACPEGLKLLPDLL 216 (734)
Q Consensus 199 ~~~~C-~C~~G~~~~~~~~ 216 (734)
+.+.| .|+.||.|..+++
T Consensus 16 g~~~C~~C~~g~~G~~Ce~ 34 (162)
T 1klo_A 16 KEVVCTHCPTGTAGKRCEL 34 (162)
T ss_dssp CCEEECSCCTTEESTTSCE
T ss_pred CCEEeCCCCCCCcCCCCcC
Confidence 45678 6888888887764
No 450
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.58 E-value=22 Score=37.16 Aligned_cols=161 Identities=9% Similarity=0.028 Sum_probs=87.0
Q ss_pred ceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-------------CCccceeeeccC-CcEEEEeCCC
Q psy8875 504 SATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-------------TIADGLAVDWIY-SHIYWTDAHK 568 (734)
Q Consensus 504 ~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-------------~~p~glAvD~~~-~~lY~td~~~ 568 (734)
...+|.+++. .+.||+... .+.|++.. ++|..-+.+.. .+ ..+..|++|+.. +.||+...
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-DgG~tW~~~~~-~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-- 252 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMS-SGGVFEST-DAGTDWKPLNR-GCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-- 252 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEE-TBEEEEES-STTSSCEECCT-TCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--
T ss_pred ceeEEEECCCCCCEEEEEEC-CCCEEEEC-CCCCCceECCC-CccccccCCCccccCcceeEEEECCCCCCEEEEEcC--
Confidence 3467888874 467877643 34577654 44443332211 11 125678888764 56777653
Q ss_pred CeEEEEeCCCCceEEEEcCCCC-----CceeEEEeCC-CCeEEEEec-----------CCCceEEEeccCCCceEEEEEc
Q psy8875 569 NTIELANFEGTMRKVLVRSYLD-----EPRSLALNPI-DGWMYWSDW-----------GQNAKIERAGMDGSHRNMVIVS 631 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~-----~P~~iavD~~-~g~LYwtd~-----------~~~~~I~~~~ldG~~~~~lv~~ 631 (734)
+.|++..-.|..-+.+. ..+. ....|++||. .+.||+.-. +....|++..-.|..-+.+ ..
T Consensus 253 ~gl~~s~D~G~tW~~~~-~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~-~~ 330 (394)
T 3b7f_A 253 CGIYRMDRREGVWKRIG-DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ-DR 330 (394)
T ss_dssp TEEEEEETTTTEEECGG-GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE-CB
T ss_pred CeEEEeCCCCCcceECC-CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC-CC
Confidence 55777765555443332 2122 2346888874 467777531 1124677765444443333 23
Q ss_pred CCCC--------ceeEEEecCC-CeEEEEeCCCCeEEEEecCCCceEEEE
Q psy8875 632 DIKW--------PNGLTLDLVQ-RRLYWVDAKLNEISSCDYNGGNRRLVL 672 (734)
Q Consensus 632 ~l~~--------P~glavD~~~-~~LYw~D~~~~~I~~~~~dG~~~~~i~ 672 (734)
.+.. ..+|++|+.+ ++||+.. ..+.|++..-.|..=+.+.
T Consensus 331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~-~~g~l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGT-TGGEIWASADEGEHWQCIA 379 (394)
T ss_dssp TSCCSSCCCCCCTBSEEECCSSSCCEEEEC-TTSCEEEESSTTSBCEEEE
T ss_pred CCCCccccceEEEEEEEECCCCCCEEEEEe-CCCeEEEECCCCCCceEcc
Confidence 3322 1368888765 4677653 3456777655565555443
No 451
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=89.55 E-value=22 Score=37.07 Aligned_cols=77 Identities=5% Similarity=-0.084 Sum_probs=51.3
Q ss_pred CcceEEEeeec-------cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875 502 TKSATAIDFVF-------RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA 574 (734)
Q Consensus 502 ~~~~~~i~~d~-------~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~ 574 (734)
...+.+|+|.+ ..+++..+-...+.|+.-++..+.....+.. .-..+..+++.+...++..+-...+.|.+.
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~w 214 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIF 214 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEE
Confidence 34578888875 2466777777788888888764433333333 334566788877766677777777889888
Q ss_pred eCCCC
Q psy8875 575 NFEGT 579 (734)
Q Consensus 575 ~ldG~ 579 (734)
++...
T Consensus 215 d~~t~ 219 (393)
T 4gq1_A 215 DWTLN 219 (393)
T ss_dssp ETTCC
T ss_pred ECCCC
Confidence 87543
No 452
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=89.48 E-value=0.36 Score=39.90 Aligned_cols=57 Identities=26% Similarity=0.634 Sum_probs=44.6
Q ss_pred cccc-CCCcceeecCCCcEecCCCCccccc--cCcCCC-CCccc--ceeccC-----CceEEecCCCeee
Q psy8875 402 KCVD-LPVGYMCECNEGYKLSSNRHTCIDI--DECETP-GSCSQ--ICLNEK-----GGFKCECVAGYIK 460 (734)
Q Consensus 402 ~C~~-~~~~~~C~C~~G~~l~~~~~~C~~~--~eC~~~-~~C~~--~C~n~~-----g~~~C~C~~gy~~ 460 (734)
.|.+ .++.++|.|.+||+. ++..|+.+ +.|+.. +.|.. .|+... +...|.|.+||.-
T Consensus 17 ~C~r~~~g~e~C~C~~gy~g--dg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~ 84 (99)
T 1ob1_C 17 GCFRHLDEREECKCLLNYKQ--EGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSY 84 (99)
T ss_dssp EEECCTTSCCEEEECTTEEE--ETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCC
T ss_pred CeEEcCCCCEEEEecCCeec--CCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcc
Confidence 5666 578899999999987 67889876 578754 78854 788774 5689999999754
No 453
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=88.40 E-value=21 Score=35.25 Aligned_cols=231 Identities=9% Similarity=-0.013 Sum_probs=115.8
Q ss_pred eeeeeeccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875 476 SLLFARKHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL 552 (734)
Q Consensus 476 ~l~~~~~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl 552 (734)
.|.++.++.|+.-++.......++. ....+.+|+|.+..+ ++.+-...+.|...++..+.....+ ... ...-.
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h--~~~~~ 113 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNM-TSH--SARVG 113 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-ECC--SSCEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEe-cCc--cceEE
Confidence 3444455666666666555444332 234578899987554 4455566788888888754332222 222 22233
Q ss_pred eeeccCCcEEEEeCCCCeEEEEeCCCCceE-EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-Cce---EE
Q psy8875 553 AVDWIYSHIYWTDAHKNTIELANFEGTMRK-VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHR---NM 627 (734)
Q Consensus 553 AvD~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~---~~ 627 (734)
++.+.. .+..+-...+.+........... ..+.........+++.+...+|+-... .+.|...++.. ... ..
T Consensus 114 ~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 114 SLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN--DNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp EEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCEEEEESSCBTTBSCCSE
T ss_pred EeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec--CcceeEEECCCCccccccee
Confidence 444333 44455555566666665543332 233344556677778776555554442 34555544432 111 11
Q ss_pred EEEcCCCCceeEEEecCCCeEEEE--eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEe-CCCCceE
Q psy8875 628 VIVSDIKWPNGLTLDLVQRRLYWV--DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSD-WQQKAIY 702 (734)
Q Consensus 628 lv~~~l~~P~glavD~~~~~LYw~--D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd-~~~~~v~ 702 (734)
...........+++.+....+.+. ....+.|...+............ ......+.+ .++.++.+. ...+.|+
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc---eeeeeeeeecccccceEEEEEcCCCEEE
Confidence 111222334556666555555443 23445666666655544433321 122233333 344554443 2345666
Q ss_pred EEeccCCCceEEEe
Q psy8875 703 KANKFTGDNLTAIT 716 (734)
Q Consensus 703 ~~~~~~G~~~~~l~ 716 (734)
..+..+++.+..+.
T Consensus 268 iwd~~~~~~~~~l~ 281 (318)
T 4ggc_A 268 IWKYPTMAKVAELK 281 (318)
T ss_dssp EEETTTCCEEEEEC
T ss_pred EEECCCCcEEEEEc
Confidence 66666666655554
No 454
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.23 E-value=24 Score=38.87 Aligned_cols=161 Identities=3% Similarity=-0.173 Sum_probs=85.4
Q ss_pred CcceEEEeeecc-----CCeEEEEEeCCCcEEEEecCCCCce---E-------EEEeCCCCCccceeeeccCCcEEEEeC
Q psy8875 502 TKSATAIDFVFR-----TGMIFWSDISEKKIYKAPIDEGSER---T-------VVIEEDKTIADGLAVDWIYSHIYWTDA 566 (734)
Q Consensus 502 ~~~~~~i~~d~~-----~~~lyw~d~~~~~I~~~~l~~g~~~---~-------~~~~~~~~~p~glAvD~~~~~lY~td~ 566 (734)
...+..|+|.+. .+.+..+-...+.|...++..+... . ..+......+..+++. ...+.++-.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s--~~~~lasgs 284 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL--SPTTVVCGF 284 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES--SSSEEEEEE
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec--CCCeEEEEe
Confidence 456788999875 2345555556777877777644211 0 1111111233444443 334556666
Q ss_pred CCCeEEEEeCCCC-ceEEEEcCCCCCceeEEE-eCCCC-eEEEEecCCCceEEEeccCC-CceEEEEE-cCCCCceeEEE
Q psy8875 567 HKNTIELANFEGT-MRKVLVRSYLDEPRSLAL-NPIDG-WMYWSDWGQNAKIERAGMDG-SHRNMVIV-SDIKWPNGLTL 641 (734)
Q Consensus 567 ~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iav-D~~~g-~LYwtd~~~~~~I~~~~ldG-~~~~~lv~-~~l~~P~glav 641 (734)
..+.|.+.++... .....+........+|++ -+..+ .++.+-. ..+.|...++.. ....++.. ........|++
T Consensus 285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S-~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA-VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE-TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec-cCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 6789999998743 332333344455677742 23444 6666653 335666666532 22222221 11122457888
Q ss_pred ecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875 642 DLVQRRLYWVDAKLNEISSCDYNGG 666 (734)
Q Consensus 642 D~~~~~LYw~D~~~~~I~~~~~dG~ 666 (734)
.+.... +.+-...+.|...++...
T Consensus 364 sp~~~~-l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 364 CPQIYS-YIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp ETTTTE-EEEECSSSEEEEEETTCT
T ss_pred CCCcCe-EEEeCCCCcEEEEECccc
Confidence 765444 555445566777775543
No 455
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=87.83 E-value=26 Score=35.84 Aligned_cols=190 Identities=8% Similarity=-0.005 Sum_probs=95.3
Q ss_pred eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC-c-eE
Q psy8875 505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT-M-RK 582 (734)
Q Consensus 505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~-~-~~ 582 (734)
...+++.+..+.+.++....+.|...++..+.....+ . ....+.+++++ ...++++. .+.|.+.++... . ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-~-~~~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-K-VDAPVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRIT 134 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE-E-CSSCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE-E-CCCceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeE
Confidence 3445555556667666555667777777644332222 2 22234455554 44555553 367888887654 1 11
Q ss_pred EEEcCCCCCcee-EEEeCCCCeEEEEecCCCceEEEeccCCCc----------------eEEEEEcCCCCceeEEEecCC
Q psy8875 583 VLVRSYLDEPRS-LALNPIDGWMYWSDWGQNAKIERAGMDGSH----------------RNMVIVSDIKWPNGLTLDLVQ 645 (734)
Q Consensus 583 ~l~~~~l~~P~~-iavD~~~g~LYwtd~~~~~~I~~~~ldG~~----------------~~~lv~~~l~~P~glavD~~~ 645 (734)
.+. .|.+ +++.+ .+|.++.....+.|...++.... ....+.........|++.+.+
T Consensus 135 ~~~-----~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 135 DDI-----RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp CCE-----EEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred Eec-----cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 111 1333 33433 44555422234566666655422 012233334456789998655
Q ss_pred CeEEEEeCCCCe-EEEEecCCC-ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875 646 RRLYWVDAKLNE-ISSCDYNGG-NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG 709 (734)
Q Consensus 646 ~~LYw~D~~~~~-I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G 709 (734)
.+| .+-+..+. |...++... ...++... .......+|++. .+.++.+-...+.|...+..++
T Consensus 208 ~~l-~s~s~d~~~v~iwd~~~~~~~~~~~~g-~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 208 DMV-ATCSQDGTIIRVFKTEDGVLVREFRRG-LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SEE-EEEETTCSEEEEEETTTCCEEEEEECT-TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CEE-EEEeCCCCEEEEEECCCCcEEEEEEcC-CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 444 45445566 888887644 34444311 122344567773 3444455444466665554443
No 456
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=87.70 E-value=26 Score=35.63 Aligned_cols=191 Identities=13% Similarity=0.049 Sum_probs=95.2
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRK 582 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~ 582 (734)
.+.+|++.. .+.+|.+. ..+.|++. .|+|..-+.+.........+|++++ .+.+|.+.. .+.|++..-. |..-+
T Consensus 123 ~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 123 SPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWE 197 (327)
T ss_dssp CEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCE
T ss_pred CeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCcee
Confidence 456666543 46677664 35667774 4545444333322223455677765 345555443 4667776543 55544
Q ss_pred EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-CC---CceeEEEecCCCeEEEEeCCCCeE
Q psy8875 583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-IK---WPNGLTLDLVQRRLYWVDAKLNEI 658 (734)
Q Consensus 583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-l~---~P~glavD~~~~~LYw~D~~~~~I 658 (734)
.+..........|++++. +.+|.+.. .+.|++...|+...-..+... +. ...+|+++. .+.||.+-. .+.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~-g~~~~~~~--~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 198 PHNRTTSRRLHNMGFTPD-GRLWMIVN--GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL 272 (327)
T ss_dssp EEECCSSSCEEEEEECTT-SCEEEEET--TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE
T ss_pred ECCCCCCCccceeEECCC-CCEEEEeC--CceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE
Confidence 443333345678888764 56766552 356766655532221111111 11 123455543 567776654 4556
Q ss_pred EEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875 659 SSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 659 ~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~ 705 (734)
++. .| |..-+.+...........+|++..+..+|+-...+.|++.+
T Consensus 273 ~~S-~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 273 LCS-QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEE-SSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEe-CCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 554 45 44333332111111234567664333455555566777664
No 457
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens}
Probab=87.45 E-value=44 Score=37.99 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=73.8
Q ss_pred cceeeeccCC-cEEEEeCC-----CCeEEEEeCCCCceEEEEcCCCCCc-eeEEEeCCCC-eEEEEecCCCceEEEeccC
Q psy8875 550 DGLAVDWIYS-HIYWTDAH-----KNTIELANFEGTMRKVLVRSYLDEP-RSLALNPIDG-WMYWSDWGQNAKIERAGMD 621 (734)
Q Consensus 550 ~glAvD~~~~-~lY~td~~-----~~~I~~~~ldG~~~~~l~~~~l~~P-~~iavD~~~g-~LYwtd~~~~~~I~~~~ld 621 (734)
.+|++|+... +||++-.. .+.|++..=.|..-+.+.. . ..| ..|+++|.+. .||+.. ..+.|++..-.
T Consensus 93 ~~IavdP~dp~~vyvag~~~~~~~~g~v~rS~DgG~TW~~~~~-p-~~~~~~l~~~P~~~~~l~a~~--~~~gly~S~Dg 168 (685)
T 3f6k_A 93 FGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDL-P-FHPLTQMMYSPQNSDYLLALS--TENGLWVSKNF 168 (685)
T ss_dssp GCEEECSTTCCCEEEEECCCTTCSSCEEEEESSTTSSCEEEEC-S-SCBSSCCEEETTEEEEEEEEB--TTCCEEEESST
T ss_pred eEEEECCCCCCEEEEEEeccCCCCCceEEEECCCCceeEeccC-C-CCCceEEEEecCCCCEEEEEE--CCCCEEEEeCC
Confidence 5799998754 78888642 4677776655655444431 1 233 3799999754 567664 24678886544
Q ss_pred CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-------C--eEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEE
Q psy8875 622 GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-------N--EISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLY 692 (734)
Q Consensus 622 G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-------~--~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~ly 692 (734)
|. .-..+...+. ...++ ..+.|||.-... + .|.+.+-.|...+++. ....++++.+++|+
T Consensus 169 G~-TW~~i~~~v~---~~~f~-~~~~Iy~~~~~~~~~~~~~g~l~L~~S~D~g~t~~~l~------~~i~~f~~~~~yl~ 237 (685)
T 3f6k_A 169 GG-KWEEIHKAVC---LAKWG-SDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIG------VKIYSFGLGGRFLF 237 (685)
T ss_dssp TS-SEEEEESSEE---EEEEC-STTCEEEEECSSSCTTTTTTSEEEEEESSTTSSCEEEE------EEEEEEEEETTEEE
T ss_pred CC-CcEEeecCcc---ccccC-CCCeEEEEeeccccccCCCCceEEEEecCCCCCceEee------ccceeeeeeeeEEE
Confidence 44 4334444432 23343 356788874221 2 2333222233444433 23456777888888
Q ss_pred EEe
Q psy8875 693 WSD 695 (734)
Q Consensus 693 wtd 695 (734)
++-
T Consensus 238 va~ 240 (685)
T 3f6k_A 238 ASV 240 (685)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 458
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=86.75 E-value=44 Score=37.24 Aligned_cols=79 Identities=8% Similarity=-0.007 Sum_probs=45.1
Q ss_pred eEEEecCCCeEEEEeCC-----------------------CCeEEEEecCCCceEEEEcCCC-------CCCCCeEEEEE
Q psy8875 638 GLTLDLVQRRLYWVDAK-----------------------LNEISSCDYNGGNRRLVLYSPQ-------TLSHPFSISTF 687 (734)
Q Consensus 638 glavD~~~~~LYw~D~~-----------------------~~~I~~~~~dG~~~~~i~~~~~-------~~~~P~gl~v~ 687 (734)
.+++|+..++||+.... .+.|..++.+....+-..+... ....|.-+...
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 47899999999998731 1578888875444433332110 12344433331
Q ss_pred --CC---EEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 688 --ED---WLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 688 --~~---~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
++ .+++.-..++.|+.+++.+|+.+..+.
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 23 244444455777777777777665543
No 459
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=86.65 E-value=0.12 Score=37.75 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=24.4
Q ss_pred CcccCCCcccC----CCCCccccCCCCCccCCCcc
Q psy8875 186 HLCLPAPQINA----HSPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 186 ~~C~~~~~~~~----~~~~~~C~C~~G~~~~~~~~ 216 (734)
.+|+|+++|.. ..+.|.|.|++||.|..++.
T Consensus 14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (52)
T ss_dssp HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence 36888888874 34578999999999987764
No 460
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=86.54 E-value=26 Score=34.45 Aligned_cols=216 Identities=8% Similarity=-0.010 Sum_probs=110.7
Q ss_pred cceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875 483 HDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l 561 (734)
..|+.-++....... +.........++.+ . .+..+....+.+.......+......+.........+++.+.. ++
T Consensus 89 g~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 164 (318)
T 4ggc_A 89 AEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RH 164 (318)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SE
T ss_pred CcEEEeecCCceeEEEecCccceEEEeecC--C-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CE
Confidence 344444554333222 22222334444443 3 3344444455555555543333333333344455666776444 44
Q ss_pred EEEeCCCCeEEEEeCCCCce----EEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCc
Q psy8875 562 YWTDAHKNTIELANFEGTMR----KVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWP 636 (734)
Q Consensus 562 Y~td~~~~~I~~~~ldG~~~----~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P 636 (734)
+++-...+.|.+.++..... .............++..+....++++..+ ....|...++......... ......
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v 243 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQV 243 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCE
T ss_pred EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeee
Confidence 55555567888887753221 11222333455778888877777665433 3345655555544333322 333446
Q ss_pred eeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875 637 NGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 637 ~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~ 705 (734)
..+++.+..+.|+.+-. ..+.|...++........+.. ....-.+|++. .+.+++|-...+.|..-+
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 67788878888877653 467888888765544433432 23334567773 344444444445444433
No 461
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=85.25 E-value=48 Score=36.82 Aligned_cols=129 Identities=8% Similarity=0.002 Sum_probs=80.0
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeC----CCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEE----DKTIADGLAVDWIYSHIYWTDAHKNTIEL 573 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~----~~~~p~glAvD~~~~~lY~td~~~~~I~~ 573 (734)
...+|+|.+..+.|+... ..+.|...++.++.. ....+.. ....+..||+-+.+ +.+-...+.|.+
T Consensus 131 sv~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp CEEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred cEEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 478999999887777664 577788888875532 1112211 12355666666433 556666788999
Q ss_pred EeCCCCceE----EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875 574 ANFEGTMRK----VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641 (734)
Q Consensus 574 ~~ldG~~~~----~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav 641 (734)
.++++.... ++.........++++. ..+|--+. .+.|...+..+....++.........+|++
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence 999876632 2322334567888886 34444442 368888888876664444344555667777
No 462
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=84.94 E-value=0.63 Score=42.89 Aligned_cols=38 Identities=21% Similarity=0.537 Sum_probs=22.8
Q ss_pred eccCCCCeeeCCCCCCCCCC-CCCCCCCcCCCCCCCcccccC
Q psy8875 100 TCRSSPGECVPLTWMCDDNP-DCSDGSDEKSCKNRTCQASEF 140 (734)
Q Consensus 100 ~C~~~~~~Ci~~~~~Cdg~~-dC~dg~de~~C~~~~C~~~~f 140 (734)
+|.++ +.|++....=.++. +|+.++...+|+ .|.+..|
T Consensus 2 ~C~~~-g~C~~~~~~g~~~C~~C~~g~~G~~Ce--~C~~g~~ 40 (162)
T 1klo_A 2 PCPGG-SSCAIVPKTKEVVCTHCPTGTAGKRCE--LCDDGYF 40 (162)
T ss_dssp CSCTT-CCEEECSSSCCEEECSCCTTEESTTSC--EECTTEE
T ss_pred cCcCc-CcccccCCCCCEEeCCCCCCCcCCCCc--CCCCCCc
Confidence 46665 67876542111233 688888888885 4665544
No 463
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=83.87 E-value=19 Score=39.59 Aligned_cols=157 Identities=8% Similarity=-0.021 Sum_probs=88.3
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCC-cEEEEeCCCCeEEEEeCCCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYS-HIYWTDAHKNTIELANFEGT 579 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~-~lY~td~~~~~I~~~~ldG~ 579 (734)
...+.+++|.+. + +..+-..++.|...++..+......+......+.+|++.+ ..+ +++.+-+..+.|.+.++...
T Consensus 266 ~~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 266 DSLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp TTCEEEEEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CCCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 356778888753 3 4555567788988888754332222332334566674332 334 78888888899999988542
Q ss_pred -ceEEEEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875 580 -MRKVLVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656 (734)
Q Consensus 580 -~~~~l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~ 656 (734)
...++.. ........|++.|... .+.+-. ....|...++.... ..++ .......++|++.+.+..| .+-+..+
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~-~d~tv~lwd~~~~~~~~~l-~gH~~~V~sva~Sp~g~~l-~Sgs~Dg 419 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSD-GASSLRAVPSRAAFAVHPL-VSRETTITAIGVSRLHPMV-LAGSADG 419 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTT-EEEEEC-SSSEEEEEETTCTTCCEEE-EECSSCEEEEECCSSCCBC-EEEETTT
T ss_pred CcccccccccccCcccceEeCCCcC-eEEEeC-CCCcEEEEECcccccceee-ecCCCceEEEEeCCCCCeE-EEEECCC
Confidence 2223321 1112357899998644 444432 23456555554332 2333 3344567788887655444 4444456
Q ss_pred eEEEEecC
Q psy8875 657 EISSCDYN 664 (734)
Q Consensus 657 ~I~~~~~d 664 (734)
.|...++.
T Consensus 420 tv~lwd~~ 427 (524)
T 2j04_B 420 SLIITNAA 427 (524)
T ss_dssp EEECCBSC
T ss_pred EEEEEech
Confidence 66655543
No 464
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=83.85 E-value=0.73 Score=44.64 Aligned_cols=87 Identities=23% Similarity=0.522 Sum_probs=49.0
Q ss_pred cccCCCCCccCCCccccccCC----CCCCCCC-Cceee-CCCceecCcCCCCCCCCCCCC------CCCCCCC---CCCC
Q psy8875 202 SCACPEGLKLLPDLLMCAEAG----SKPCRNS-TMFRC-TGGMCIPSTWVCDGQNDCPDG------VDEKKCH---ETCR 266 (734)
Q Consensus 202 ~C~C~~G~~~~~~~~~~~~~~----~~~C~~~-~~~~C-~~g~Ci~~~~~Cdg~~dC~dg------~de~~C~---~~C~ 266 (734)
.|.|++||.|..++....... ...|... ..-.| ..|+|+. ..|. |..| +.+..|+ ..|.
T Consensus 108 ~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~--g~C~----C~~gw~~~~~~~G~~Ce~~~~~C~ 181 (217)
T 2p28_B 108 ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC--GQCL----CHTSDVPGKLIYGQYCECDTINCE 181 (217)
T ss_dssp EEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET--TEEE----ECCCCSTTCCEESTTSCEESSCSC
T ss_pred EEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC--CceE----CCCCCCCcccEECCCcccCCccCC
Confidence 577777777777663211100 0122210 11234 2457764 2454 8888 5777886 3575
Q ss_pred CC-ceecCC---CCeecCCcccCCCCCCCCCCCCCCCC
Q psy8875 267 SD-EFTCAN---GNCIQRIWLCDGDDDCKDGSDEKSCQ 300 (734)
Q Consensus 267 ~~-~~~C~~---g~Ci~~~~~Cdg~~dC~dgsDe~~C~ 300 (734)
.. ...|.+ |+|+.. .| .|..|+.+..|+
T Consensus 182 ~~~g~~C~~~~~G~C~~g--~C----~C~~G~~G~~C~ 213 (217)
T 2p28_B 182 RYNGQVCGGPGRGLCFCG--KC----RCHPGFEGSACQ 213 (217)
T ss_dssp EETTEETTCTTTEEEETT--EE----EECTTEESTTSC
T ss_pred CCCCCCCCCCCCcEEeCC--ee----ECCCCCccCCcC
Confidence 42 335764 678853 56 788888888886
No 465
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=82.67 E-value=0.2 Score=37.45 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=24.3
Q ss_pred cccCCCccc--C--CCCCccccCCCCCccCCCccc
Q psy8875 187 LCLPAPQIN--A--HSPKISCACPEGLKLLPDLLM 217 (734)
Q Consensus 187 ~C~~~~~~~--~--~~~~~~C~C~~G~~~~~~~~~ 217 (734)
+|+|+++|. + ....+.|.|++||.|..|+..
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~ 49 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence 688888886 3 345689999999999887653
No 466
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=82.19 E-value=73 Score=36.77 Aligned_cols=188 Identities=15% Similarity=0.053 Sum_probs=97.3
Q ss_pred EEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCC-ccceeeeccCCc-EEEEeCCCCeEEEEeCCCCceE
Q psy8875 507 AIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTI-ADGLAVDWIYSH-IYWTDAHKNTIELANFEGTMRK 582 (734)
Q Consensus 507 ~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~-p~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~~~ 582 (734)
.+++++....+.|+-.. ...|++. .+.|..-+.+ . .+.. ...|++|+.+.+ ||... .+.|++..=.|..-+
T Consensus 548 ~i~v~~~~~~~~~~~~~~~~~~v~~S-~D~G~tW~~~-~-~l~~~~~~i~~d~~~~~~~y~g~--~g~v~~S~DgG~tW~ 622 (763)
T 3a0f_A 548 TIAVGADGKTFVWSPSKADGKGPYTS-SDYGKTWTAP-S-GLSKQTTGIAADRVQANTFYVYV--EGDFFVSTDGGKSYT 622 (763)
T ss_dssp EEEECTTSSCEEEECSSCCSSCCEEE-SSTTSCCBCC-B-SCCCCCSCEEECSSSTTCEEEEE--TTEEEEESSTTSBCE
T ss_pred eEEEecCCCcEEEEecccCCCceEEe-CCCCCCCeec-C-CCCCCcceEEEeccCCCEEEEEc--CCCEEEEeCCCcCcc
Confidence 44445445555555432 4467764 3544432222 2 2322 247888887655 55553 477877654455444
Q ss_pred EEEcCCCC----CceeEEEeC-CCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC-c----e--eEEEe-cCCCeEE
Q psy8875 583 VLVRSYLD----EPRSLALNP-IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW-P----N--GLTLD-LVQRRLY 649 (734)
Q Consensus 583 ~l~~~~l~----~P~~iavD~-~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~-P----~--glavD-~~~~~LY 649 (734)
.+. ..+. .+.-|+++| ..+.||.+-. ...|++..-.|..-+.+. .+.. . . ++++. .....||
T Consensus 623 ~~~-~~lp~~~~~~~~i~~~~~~~~~l~~~~~--~~~l~~S~D~G~tW~~~~--~~~~~~~~~~~~~g~~~~~~~~~~l~ 697 (763)
T 3a0f_A 623 KKG-NGLPCCWTYTGTPVTSNLRAGELWVSVK--GVGIYHSTDFGNTFTALA--GSGSSLNPAVFSIGAPQTPNATETLF 697 (763)
T ss_dssp EEC-BTSCCSSCCCEEEEECSSSTTCEEEEET--TTEEEEESSTTSBCEECT--TBTTTBEEEEEEEECCSSTTSSCEEE
T ss_pred ccc-cCCCcccCccccEEECCCCCCcEEEEcC--CCeEEEEcCCCCCceEcc--CCCcccccceeEEeeecCCCCCceEE
Confidence 442 2332 222278887 5678888763 347888765555444332 2211 1 1 22222 2245788
Q ss_pred EEe---C-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCEEEEEeCCCCceEEEe
Q psy8875 650 WVD---A-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 650 w~D---~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~lywtd~~~~~v~~~~ 705 (734)
++- . ....|++..-.|..=+.+-.....++.+..|++. .++||++..+.+ |+..+
T Consensus 698 ~~G~~~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~i~~~p~~~~~v~~~T~GrG-i~~g~ 759 (763)
T 3a0f_A 698 LWGIPSASQPEGLYMSTDNGGLWTRLNDDAHNYGGATVISGDPRIYGRVYIGMNGRG-IICAQ 759 (763)
T ss_dssp EEEECSTTSCSEEEEESSTTSCCEECSCTTCCTBCEEEEEECTTSTTEEEEEEBSSC-EEEEE
T ss_pred EEEEcccCCCcEEEEeCCCCCCcEeccCccccCCCcceEEeCCCCCCEEEEeCCCCe-EEEEe
Confidence 764 1 3456777655555544443221223444456664 467999877654 55443
No 467
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=81.45 E-value=50 Score=33.63 Aligned_cols=145 Identities=6% Similarity=-0.109 Sum_probs=71.5
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCc--eeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCce---e
Q psy8875 569 NTIELANFEGTMRKVLVRSYLDEP--RSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWPN---G 638 (734)
Q Consensus 569 ~~I~~~~ldG~~~~~l~~~~l~~P--~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P~---g 638 (734)
..+++.++....-+.+........ .++++ .+++||+.--. ....|++.++|-...+-.....+..|. +
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN--KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE--ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE--ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 578899987665554432211111 23333 47889988410 124567776642222211112333332 2
Q ss_pred EEEecCCCeEEEEeCCC----------------------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875 639 LTLDLVQRRLYWVDAKL----------------------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW 696 (734)
Q Consensus 639 lavD~~~~~LYw~D~~~----------------------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~ 696 (734)
.++-..+++||+.-... ..|+.+++....=+.+...+.. ..-.++++.+++||+.--
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGG 324 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEee
Confidence 22223588999885311 2577778765543444322111 112356668999999743
Q ss_pred C------CCceEEEeccCCCceEEEe
Q psy8875 697 Q------QKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 697 ~------~~~v~~~~~~~G~~~~~l~ 716 (734)
. .+.|+++...+++.++...
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 2 1346666666666555543
No 468
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=81.10 E-value=50 Score=33.44 Aligned_cols=199 Identities=10% Similarity=0.008 Sum_probs=99.7
Q ss_pred ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-CC-CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875 504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-DK-TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581 (734)
Q Consensus 504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-~~-~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~ 581 (734)
...+|++++ +.+|.+. ..+.|++ ..|+|..-+.+... .+ ..+..|++. ..+.+|++.. .+.|++..=.|..-
T Consensus 81 ~~~~i~~~~--~~~~~~g-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~-~g~v~~S~DgG~tW 154 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWIVG-EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKAL-GNGSAEMITN-VGAIYRTKDSGKNW 154 (327)
T ss_dssp EEEEEEEET--TEEEEEE-ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEE-ETTEEEEEET-TCCEEEESSTTSSE
T ss_pred cEEEEEecC--CeEEEEE-CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEE-CCCCEEEEeC-CccEEEEcCCCCCC
Confidence 456788874 6777653 3456776 55655443332211 11 234556654 3466776654 45677765446555
Q ss_pred EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660 (734)
Q Consensus 582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~ 660 (734)
+.+.........++++++. +.+|... ..+.|++..-+ |..-+.+-...-.....|++++ .++||.+-. .+.|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~~~~g--~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~~-~G~~~~ 229 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPS-GEYVAVS--SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTP-DGRLWMIVN-GGKIAF 229 (327)
T ss_dssp EEEECSCCCCEEEEEECTT-SCEEEEE--TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECT-TSCEEEEET-TTEEEE
T ss_pred EEeecCCCcceEEEEEcCC-CcEEEEE--CCCcEEEEeCCCCCceeECCCCCCCccceeEECC-CCCEEEEeC-CceEEE
Confidence 5554333345678888874 5555544 24678877644 4444433222223446777764 556765543 355665
Q ss_pred EecC-CCceEEEEcCCCCC--CCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875 661 CDYN-GGNRRLVLYSPQTL--SHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT 716 (734)
Q Consensus 661 ~~~d-G~~~~~i~~~~~~~--~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~ 716 (734)
...| |..-+.+ ..+... ...++|++. ++.||.+.. .+.|++- ...|+.-+.+.
T Consensus 230 s~~D~G~tW~~~-~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S-~DgG~tW~~~~ 286 (327)
T 2xbg_A 230 SDPDNSENWGEL-LSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCS-QDGGQTWQQDV 286 (327)
T ss_dssp EETTEEEEECCC-BCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEE-SSTTSSCEECG
T ss_pred ecCCCCCeeEec-cCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEe-CCCCcccEEcC
Confidence 4344 2221111 111000 112445543 456666544 3445443 34455555443
No 469
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=81.06 E-value=51 Score=33.56 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=87.6
Q ss_pred ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC-CceEEEEeCCCCCccc-eeeeccCCcE
Q psy8875 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG-SERTVVIEEDKTIADG-LAVDWIYSHI 561 (734)
Q Consensus 484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g-~~~~~~~~~~~~~p~g-lAvD~~~~~l 561 (734)
.|+..++........+.....+.+++++ .+.++++. .+.|+..++..+ .....+ . .|.+ +++.+ +.|
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~~~-~----~~~~~~~~s~--~~l 150 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKVDAPVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRITDD-I----RFGGVCEFSN--GLL 150 (355)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSSCC-E----EEEEEEEEET--TEE
T ss_pred EEEEEECCCCcEEEEEECCCceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeEEe-c----cCCceEEEEc--cEE
Confidence 4554455433332222333456777776 34454442 456777777644 111111 1 1222 33443 445
Q ss_pred EEE-eCCCCeEEEEeCCCCc----------------eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCce-EEEeccCCC
Q psy8875 562 YWT-DAHKNTIELANFEGTM----------------RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK-IERAGMDGS 623 (734)
Q Consensus 562 Y~t-d~~~~~I~~~~ldG~~----------------~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~-I~~~~ldG~ 623 (734)
.++ ....+.|.+.++.... ....+.........|++.|. |.++.+-. ..+. |...++...
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s-~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCS-QDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEE-TTCSEEEEEETTTC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEe-CCCCEEEEEECCCC
Confidence 444 4556788888886533 02233345567789999985 44444442 2355 666666533
Q ss_pred ceEEEEE-c-CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875 624 HRNMVIV-S-DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665 (734)
Q Consensus 624 ~~~~lv~-~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG 665 (734)
.....+. . .......|++.+.+.+|..+ ...+.|...++..
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~-s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVV-SDKWTLHVFEIFN 271 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEE-ETTCEEEEEESSC
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEE-ECCCEEEEEEccC
Confidence 3322333 2 34556789998766655544 4456777777643
No 470
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=81.00 E-value=0.68 Score=47.03 Aligned_cols=31 Identities=45% Similarity=0.978 Sum_probs=27.8
Q ss_pred CCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875 398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 398 ~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|+|.|.+++++|.|.|.+||.|..++++|.
T Consensus 132 ~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 132 PCDHYCHXYLGGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred cCCCccccccCceEeecCCCceeccCCCCcc
Confidence 5889999999999999999999988877774
No 471
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=79.82 E-value=0.84 Score=46.05 Aligned_cols=32 Identities=38% Similarity=0.826 Sum_probs=28.8
Q ss_pred CCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875 397 GGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 397 ~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
..|.+.|.+.++++.|.|.+||.|..+.+.|.
T Consensus 132 ~~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~ 163 (278)
T 3dem_A 132 LSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163 (278)
T ss_dssp CCCSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred ccCCcCcCCccCCcEEEeCCcceeccCCCCCc
Confidence 37889999999999999999999998888775
No 472
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=79.21 E-value=0.97 Score=42.15 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCCCcccCCCcccCCCCCccccCCCCCccCCCcc
Q psy8875 183 HCSHLCLPAPQINAHSPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 183 ~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~ 216 (734)
.|...|.|++.|.. ..+|+|++||.|..|+.
T Consensus 150 ~C~~~C~ngG~Cv~---P~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 150 ECPGGCRNGGFCNE---RRICECPDGFHGPHCEG 180 (188)
T ss_dssp CCTTCCCTTCEECT---TSCEECCTTCBTTTTCB
T ss_pred ccCCCCCCCCEeCC---CCcccCcCCCCCCCCcC
Confidence 45667888888773 56899999999987765
No 473
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=78.89 E-value=0.74 Score=42.27 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=22.9
Q ss_pred CccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434 (734)
Q Consensus 401 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~ 434 (734)
..|.+..++|.|.|.+|| .|..|+.+.+|.
T Consensus 131 g~C~~~~~~~~c~C~~g~----~g~~C~~~~~c~ 160 (164)
T 3cfw_A 131 GECVEIINNYTCNCDVGY----YGPQCQFVQVDP 160 (164)
T ss_dssp EEEEEETTEEEEEECTTC----BSSSSCBC----
T ss_pred CeecccCCCceeeeCCCc----ccccccccccCc
Confidence 478888999999999999 677898888875
No 474
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=78.64 E-value=0.5 Score=39.04 Aligned_cols=44 Identities=32% Similarity=0.717 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCCcc-c--cccccCCCCCcC--ccccC-C----CcceeecCCCc
Q psy8875 375 DCPLMQDEDPTKCG-V--DECAKDNGGCLH--KCVDL-P----VGYMCECNEGY 418 (734)
Q Consensus 375 ~C~~g~d~~~~~C~-~--~eC~~~~~~C~~--~C~~~-~----~~~~C~C~~G~ 418 (734)
.|..||.+++..|. + +.|+.++++|.. .|... + +...|.|.+||
T Consensus 29 ~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~ 82 (99)
T 1ob1_C 29 KCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPD 82 (99)
T ss_dssp EECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTT
T ss_pred EecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCC
Confidence 66777766666773 2 579888899964 78887 4 67999999997
No 475
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=78.23 E-value=0.75 Score=38.26 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCc-cccc-cccCCCCCc--CccccC-CCcceeecCCCc
Q psy8875 375 DCPLMQDEDPTKC-GVDE-CAKDNGGCL--HKCVDL-PVGYMCECNEGY 418 (734)
Q Consensus 375 ~C~~g~d~~~~~C-~~~e-C~~~~~~C~--~~C~~~-~~~~~C~C~~G~ 418 (734)
.|..||.+++..| .+|. |..++++|. +.|..+ +..-.|.|.+||
T Consensus 35 rCl~gY~~dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~ 83 (105)
T 1n1i_A 35 RCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEG 83 (105)
T ss_dssp EECTTEEECSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTT
T ss_pred EEECCeeccCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCC
Confidence 6788887777778 5577 888889996 489888 588999999997
No 476
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=77.76 E-value=89 Score=34.39 Aligned_cols=119 Identities=15% Similarity=0.302 Sum_probs=68.6
Q ss_pred eEEEEeCCCCceEEEEcCCCC-CceeEEEeCCCCeE--EEE-ecCC----------CceEEEeccCCCceEEEEEcCCCC
Q psy8875 570 TIELANFEGTMRKVLVRSYLD-EPRSLALNPIDGWM--YWS-DWGQ----------NAKIERAGMDGSHRNMVIVSDIKW 635 (734)
Q Consensus 570 ~I~~~~ldG~~~~~l~~~~l~-~P~~iavD~~~g~L--Ywt-d~~~----------~~~I~~~~ldG~~~~~lv~~~l~~ 635 (734)
.+-++.|||....+++..... .-.-.|.|...+.| .|. +... ++.+..+++||-.+..|+..
T Consensus 269 ~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~G---- 344 (591)
T 2zux_A 269 LAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFG---- 344 (591)
T ss_dssp EEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEET----
T ss_pred eeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEe----
Confidence 356778888866665543322 22355677667754 553 2211 25788999988887666643
Q ss_pred ceeEEEecCCCeEEEEeC--CCCeEEEEecCCC--ceEEEEcCCCCCCCCeEEEE---ECCEEEEEeC
Q psy8875 636 PNGLTLDLVQRRLYWVDA--KLNEISSCDYNGG--NRRLVLYSPQTLSHPFSIST---FEDWLYWSDW 696 (734)
Q Consensus 636 P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~--~~~~i~~~~~~~~~P~gl~v---~~~~lywtd~ 696 (734)
+.+|| .++.+.|+-. ....+...+++.. ..+++.-. +.-..|.|..+ ..+.++|.-.
T Consensus 345 --s~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~-E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 345 --SMAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVH-EDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp --TEEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEEC-CCTTSSCSEEEEETTTCCEEEEEC
T ss_pred --eeEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEe-cCCCCCCccEEEECCCCcEEEEcC
Confidence 35788 5566666643 2346777777654 34444432 22234556555 2567777644
No 477
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=77.13 E-value=0.38 Score=46.66 Aligned_cols=95 Identities=18% Similarity=0.380 Sum_probs=51.2
Q ss_pred eccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCC-----------Ccccc--cCcCC-CCceEeCccccCCCCCCCCCC-
Q psy8875 100 TCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNR-----------TCQAS--EFRCG-NNRCIPNHWQCDGEFDCSDKS- 164 (734)
Q Consensus 100 ~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~-----------~C~~~--~f~C~-~g~Ci~~~~~Cdg~~dC~dgs- 164 (734)
.|.+. |.|+. |...|..|+.+..|+-. .|... .-.|. .|+|+. +...|..|.
T Consensus 97 ~Csg~-G~C~~------g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~------g~C~C~~gw~ 163 (217)
T 2p28_B 97 LCHGK-GFLEC------GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC------GQCLCHTSDV 163 (217)
T ss_dssp TTTTS-EEEET------TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET------TEEEECCCCS
T ss_pred ccCCC-ceEEC------CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC------CceECCCCCC
Confidence 56544 67763 55677788887777411 23321 23454 356763 344566663
Q ss_pred -----CCCCCCcc-CccccccCCCCCCCcccCC--CcccCCCCCccccCCCCCccCCCcc
Q psy8875 165 -----DEDPEMCN-GVNHCAAVNGHCSHLCLPA--PQINAHSPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 165 -----de~~~~C~-~~~~C~~~~~~C~~~C~~~--~~~~~~~~~~~C~C~~G~~~~~~~~ 216 (734)
.+.. |+ ++++|... ....|.+. ++|.. .+|.|.+||.|..++.
T Consensus 164 ~~~~~~G~~--Ce~~~~~C~~~---~g~~C~~~~~G~C~~----g~C~C~~G~~G~~C~~ 214 (217)
T 2p28_B 164 PGKLIYGQY--CECDTINCERY---NGQVCGGPGRGLCFC----GKCRCHPGFEGSACQH 214 (217)
T ss_dssp TTCCEESTT--SCEESSCSCEE---TTEETTCTTTEEEET----TEEEECTTEESTTSCE
T ss_pred CcccEECCC--cccCCccCCCC---CCCCCCCCCCcEEeC----CeeECCCCCccCCcCC
Confidence 3333 43 12233211 01146555 55553 3799999999986653
No 478
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=76.30 E-value=1.2 Score=38.20 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.8
Q ss_pred ceeeeeecceeeeeeecc--eEEEeccccCCCCcCccccC
Q psy8875 4 KCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYDT 41 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 41 (734)
.+|||..++...++.... +.|++|.+....||.+.|.+
T Consensus 76 ~~~CG~~~p~~~~s~~~~l~i~F~Sd~~~~~~GF~~~y~a 115 (115)
T 3poj_A 76 GPFCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSYRA 115 (115)
T ss_dssp EEECBSSCCCCEECCCSEEEEEEECCSSCCCCBCEEEEEC
T ss_pred ccCcCCCCCCCEEecCCEEEEEEEcCCCCCCCCEEEEEEC
Confidence 579998776644444443 77999999999999999875
No 479
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=75.83 E-value=0.98 Score=48.12 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=0.0
Q ss_pred CcccCCCcccCCCCCccccCCCCCccCCCc
Q psy8875 186 HLCLPAPQINAHSPKISCACPEGLKLLPDL 215 (734)
Q Consensus 186 ~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~ 215 (734)
.+|.|+++|.+.. +|.|++||.|..|+
T Consensus 371 ~~C~ngg~C~~~~---~C~C~~G~~G~~Ce 397 (426)
T 3zyj_B 371 LHCQNGGTCHNNV---RCLCPAAYTGILCE 397 (426)
T ss_dssp ------------------------------
T ss_pred ccCCCCCCcCCCC---CCcCCCCCcCCCCc
Confidence 4788888888754 89999999997754
No 480
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=73.62 E-value=0.85 Score=41.77 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=24.4
Q ss_pred CcccCCCcccCCCCCccccCCCCCccCCCccc
Q psy8875 186 HLCLPAPQINAHSPKISCACPEGLKLLPDLLM 217 (734)
Q Consensus 186 ~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~ 217 (734)
.+|.+.++|.+..+.|+|.|++||.|..|+..
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~ 156 (162)
T 1g1s_A 125 MSCSKQGECLETIGNYTCSCYPGFYGPECEYV 156 (162)
T ss_dssp TGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred CCCCCCCEEecCCCCceEeCCCCCcCcccccC
Confidence 34556666666668999999999999877653
No 481
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=72.83 E-value=77 Score=31.29 Aligned_cols=215 Identities=13% Similarity=0.048 Sum_probs=113.8
Q ss_pred cceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeC----CCcEEEEecCCCCceEEEEeCCCCCcc-ceeee
Q psy8875 483 HDIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDIS----EKKIYKAPIDEGSERTVVIEEDKTIAD-GLAVD 555 (734)
Q Consensus 483 ~~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD 555 (734)
..+.++++.......+.. ....-.++++. .+.||+.-.. ...++++++....-. .+. .+..|+ +.++-
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~--~~~-~~p~~r~~~~~~ 98 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWY--SKL-GPPTPRDSLAAC 98 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEE--EEE-CCSSCCBSCEEE
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEE--ECC-CCCccccceeEE
Confidence 356666666555544422 11112233332 6788887532 356778877643222 222 222222 22222
Q ss_pred ccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCce---eEEEeCCCCeEEEEec----CC----CceEEEe
Q psy8875 556 WIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPR---SLALNPIDGWMYWSDW----GQ----NAKIERA 618 (734)
Q Consensus 556 ~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~---~iavD~~~g~LYwtd~----~~----~~~I~~~ 618 (734)
..+++||+.-.. ...+++.++....-+.+. .+..|+ ++++ .+++||+.-- .. ...+++.
T Consensus 99 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~y 174 (306)
T 3ii7_A 99 AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP--SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVY 174 (306)
T ss_dssp EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEE
T ss_pred EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC--CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEe
Confidence 347889987432 356888888766544442 232232 2233 3688998852 11 3567888
Q ss_pred ccCCCceEEEEEcCCCCc---eeEEEecCCCeEEEEeCC-----CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCE
Q psy8875 619 GMDGSHRNMVIVSDIKWP---NGLTLDLVQRRLYWVDAK-----LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDW 690 (734)
Q Consensus 619 ~ldG~~~~~lv~~~l~~P---~glavD~~~~~LYw~D~~-----~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~ 690 (734)
++....-+.+ ..+..| .++++ .+++||+.-.. .+.|+.+++....=+.+... .....-.++++.+++
T Consensus 175 d~~~~~W~~~--~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~ 249 (306)
T 3ii7_A 175 DPATETWTEL--CPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTVKCAAVGSI 249 (306)
T ss_dssp ETTTTEEEEE--CCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCCEEEEETTE
T ss_pred CCCCCeEEEC--CCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccceeEEEECCE
Confidence 8765433333 223222 23333 48899998432 35788888765544433221 111223466778999
Q ss_pred EEEEeC-----CCCceEEEeccCCCc
Q psy8875 691 LYWSDW-----QQKAIYKANKFTGDN 711 (734)
Q Consensus 691 lywtd~-----~~~~v~~~~~~~G~~ 711 (734)
||+.-. ....|++.+..+.+-
T Consensus 250 i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 250 VYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 999864 235677777665543
No 482
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=72.57 E-value=2.4 Score=44.57 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=16.1
Q ss_pred CEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875 689 DWLYWSDWQQKAIYKANKFTGDNLTAI 715 (734)
Q Consensus 689 ~~lywtd~~~~~v~~~~~~~G~~~~~l 715 (734)
+.||+.... +.|+.++..+|+.+...
T Consensus 174 ~~v~~~~~d-g~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 174 MSHFVSNGD-GLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CCEEEEETS-CEEEEECTTTCCEEEEE
T ss_pred ceEEEECCC-CEEEEEECCCCcEEEEe
Confidence 566666543 56777777777655443
No 483
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=72.37 E-value=1.7 Score=46.21 Aligned_cols=44 Identities=25% Similarity=0.764 Sum_probs=0.0
Q ss_pred CCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccc
Q psy8875 265 CRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPD 320 (734)
Q Consensus 265 C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~ 320 (734)
|.....+|.|| +|++.. .| .|..|+.+..|+... |.++|.|...
T Consensus 366 CD~~t~~C~ngg~C~~~~-~C----~C~~G~~G~~Ce~c~-------C~~~g~C~~~ 410 (426)
T 3zyj_B 366 CDNELLHCQNGGTCHNNV-RC----LCPAAYTGILCEKLR-------CEEAGSCGSD 410 (426)
T ss_dssp ---------------------------------------------------------
T ss_pred cccCcccCCCCCCcCCCC-CC----cCCCCCcCCCCcCCC-------CCCCCcccCC
Confidence 44445678887 898876 77 899999999987533 4444555553
No 484
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=71.37 E-value=1.3 Score=32.18 Aligned_cols=23 Identities=30% Similarity=0.781 Sum_probs=18.1
Q ss_pred ccc--cCCCcceeecCCCcEecCCCCccc
Q psy8875 402 KCV--DLPVGYMCECNEGYKLSSNRHTCI 428 (734)
Q Consensus 402 ~C~--~~~~~~~C~C~~G~~l~~~~~~C~ 428 (734)
.|+ +..++|+|.|++|| .|..|+
T Consensus 19 ~C~~~~~~~~~~C~C~~Gy----tG~~Ce 43 (53)
T 1nql_B 19 VCMYIEALDKYACNCVVGY----IGERCQ 43 (53)
T ss_dssp EEEEETTTTEEEEEECTTE----ESTTSC
T ss_pred EEeeecCCCCEEEecCCCC----cCCCCC
Confidence 576 66788999999999 566774
No 485
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=68.64 E-value=1.2 Score=49.46 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=28.6
Q ss_pred CCcccCCCcccC-CCCCccccCC-CCCccCCCcc
Q psy8875 185 SHLCLPAPQINA-HSPKISCACP-EGLKLLPDLL 216 (734)
Q Consensus 185 ~~~C~~~~~~~~-~~~~~~C~C~-~G~~~~~~~~ 216 (734)
+++|.|+++|.+ ..+.|+|.|+ .||.|..|+.
T Consensus 7 ~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (553)
T 1q4g_A 7 YYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40 (553)
T ss_dssp GCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence 578999999998 8889999999 9999988765
No 486
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=67.97 E-value=2.2 Score=47.45 Aligned_cols=36 Identities=28% Similarity=0.588 Sum_probs=27.6
Q ss_pred ccccccCCCCCcCcccc-CCCcceeecC-CCcEecCCCCccc
Q psy8875 389 VDECAKDNGGCLHKCVD-LPVGYMCECN-EGYKLSSNRHTCI 428 (734)
Q Consensus 389 ~~eC~~~~~~C~~~C~~-~~~~~~C~C~-~G~~l~~~~~~C~ 428 (734)
+|+|..+++.....|.+ ..++|+|.|+ +|| .|+.|+
T Consensus 2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~----~G~~Ce 39 (553)
T 1q4g_A 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGY----SGPNCT 39 (553)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSE----ETTTTC
T ss_pred CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCc----CCCCCC
Confidence 35676655444458999 8999999999 999 577785
No 487
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=67.49 E-value=1.7 Score=39.19 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=32.4
Q ss_pred ceeeeeecceeeeeeecc--eEEEeccccCCCCcCccccCCCC
Q psy8875 4 KCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYDTFTS 44 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 44 (734)
.+|||..++...++.... +.|++|.++...||.|.|.+...
T Consensus 79 ~~~CG~~~p~~~~S~~n~l~v~F~Sd~~~~~~GF~a~y~~~~~ 121 (149)
T 2wno_A 79 GRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVAMDP 121 (149)
T ss_dssp EEECSSSCCCCEECSSSEEEEEEECCSSCCCCEEEEEEEEECC
T ss_pred eeEcCCCCCCCEEEeCCEEEEEEEECCCCCCCCEEEEEEEECC
Confidence 589998777644444443 77999999999999999998754
No 488
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=67.26 E-value=1.6e+02 Score=32.69 Aligned_cols=170 Identities=6% Similarity=-0.063 Sum_probs=101.2
Q ss_pred CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC----CCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK----TIADGLAVDWIYSHIYWTDAHKNTIELANFE 577 (734)
Q Consensus 502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~----~~p~glAvD~~~~~lY~td~~~~~I~~~~ld 577 (734)
...+.+++|.|....|-.+. .++.|+..+.. + ....+.... .....+|+.+.++.|+.+.. .+.|.+.++.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~-~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-DGtVkIWd~~ 159 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLS-NNGNVSVFKDN-K--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-DGELQFFSIR 159 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEE-TTSCEEEEETT-E--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-TSEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-c--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-CCEEEEEECC
Confidence 45688999998766666554 55666666533 2 111111111 13667999988888887765 5889999987
Q ss_pred CCc--------eEEEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE----EEEEcCCCCceeEEEe
Q psy8875 578 GTM--------RKVLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN----MVIVSDIKWPNGLTLD 642 (734)
Q Consensus 578 G~~--------~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~----~lv~~~l~~P~glavD 642 (734)
+.. ..++- .+...+...|++.|.. |-.+. ....|...++++.... ++....-....++++.
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass--~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL--SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE--TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe--CCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 763 13332 2334688899999854 33332 2456666677665532 2221222346777775
Q ss_pred cCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875 643 LVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686 (734)
Q Consensus 643 ~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v 686 (734)
+++|-.+- .++|...++.+....++..+ ....-.+|++
T Consensus 236 --g~~LASa~--~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~ 273 (588)
T 2j04_A 236 --DYKVVLTC--PGYVHKIDLKNYSISSLKTG--SLENFHIIPL 273 (588)
T ss_dssp --TTEEEEEC--SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred --CCEEEEEe--CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence 45555443 47999999888777555432 2333455666
No 489
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=66.14 E-value=3.3 Score=41.82 Aligned_cols=32 Identities=34% Similarity=0.863 Sum_probs=27.3
Q ss_pred CCcccceeccCCceEEecCCCeeeCCCCCcccc
Q psy8875 437 GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469 (734)
Q Consensus 437 ~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~ 469 (734)
..|.|.|.|+.|+|.|.|.+||.+..+.++ |.
T Consensus 131 ~~c~~~C~n~~g~~~csC~~Gy~L~~d~~~-C~ 162 (286)
T 1nt0_A 131 VPCDHYCHXYLGGYYCSCRVGYILHQNKHT-CS 162 (286)
T ss_dssp -CCSSEEEEETTEEEEECCTTEEECTTSSC-EE
T ss_pred ccCCCccccccCceEeecCCCceeccCCCC-cc
Confidence 359999999999999999999999877655 64
No 490
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=65.95 E-value=1e+02 Score=30.14 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=102.1
Q ss_pred CCeEEEEEeC-----CCcEEEEecCCCC---ceEEEEeCCCCCcc-ceeeeccCCcEEEEeCC-----CCeEEEEeCCCC
Q psy8875 514 TGMIFWSDIS-----EKKIYKAPIDEGS---ERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAH-----KNTIELANFEGT 579 (734)
Q Consensus 514 ~~~lyw~d~~-----~~~I~~~~l~~g~---~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~-----~~~I~~~~ldG~ 579 (734)
.+.||+.-.. ...+++.++.... -.. + . .+..|+ +.++-..+++||+.-.. ...+++.++...
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~-~-~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-V-A-PMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-E-C-CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-C-C-CCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 5788887432 2468888887544 222 2 2 222222 22222246889988432 356888888766
Q ss_pred ceEEEEcCC--CCCceeEEEeCCCCeEEEEecC----CCceEEEeccCCCceEEEEEcCCCCce-eEEEecCCCeEEEEe
Q psy8875 580 MRKVLVRSY--LDEPRSLALNPIDGWMYWSDWG----QNAKIERAGMDGSHRNMVIVSDIKWPN-GLTLDLVQRRLYWVD 652 (734)
Q Consensus 580 ~~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~----~~~~I~~~~ldG~~~~~lv~~~l~~P~-glavD~~~~~LYw~D 652 (734)
.-+.+.... .... ++++ .+++||+.--. ....+++.++....-+.+ ..+..|. +.++-..+++||+.-
T Consensus 139 ~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 139 QWSMLGDMQTAREGA-GLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp EEEEEEECSSCCBSC-EEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCCSSCCBSCEEEEETTEEEEEC
T ss_pred eEEECCCCCCCcccc-eEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCCCcccccceEEEECCEEEEEe
Confidence 555443211 1122 2333 36889988411 135688888765443333 2333332 112222478999985
Q ss_pred CC-----CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-----CceEEEeccCCC
Q psy8875 653 AK-----LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-----KAIYKANKFTGD 710 (734)
Q Consensus 653 ~~-----~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-----~~v~~~~~~~G~ 710 (734)
.. .+.|+.+++....-+.+...+ ....-.++++.+++||+.-... ..|++.+..+.+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCC-CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 42 467888888765544443211 1112246677899999985322 456777765544
No 491
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=65.09 E-value=3.5 Score=35.28 Aligned_cols=40 Identities=3% Similarity=-0.104 Sum_probs=29.2
Q ss_pred ceeeeeecceeeeeeecc--eEEEeccccCCCCcCccccCCCC
Q psy8875 4 KCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYDTFTS 44 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 44 (734)
.+|||.- +...++.... +.|++|.+....||.+.|.++..
T Consensus 71 ~~~CG~~-p~~~~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~~ 112 (116)
T 1spp_B 71 GKLCAGA-AIVFLSTANTMTIKYNRISGNSSSPFLIYFYGSSP 112 (116)
T ss_dssp EEESEEE-EEEEECSSSEEEEEEEESSCSCCCCCEEEEEEECC
T ss_pred ccccCcC-CCCEEecCCEEEEEEEECCCCCCCCEEEEEEEeCC
Confidence 4899986 3322222222 78999999999999999998653
No 492
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=64.26 E-value=1.8e+02 Score=32.22 Aligned_cols=131 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred EEEEecCCCCceEEEEeCCCCCccce-eeeccCC---cEEEEeCCC-----------CeEEEEeCCCCceEEEEcCCCCC
Q psy8875 527 IYKAPIDEGSERTVVIEEDKTIADGL-AVDWIYS---HIYWTDAHK-----------NTIELANFEGTMRKVLVRSYLDE 591 (734)
Q Consensus 527 I~~~~l~~g~~~~~~~~~~~~~p~gl-AvD~~~~---~lY~td~~~-----------~~I~~~~ldG~~~~~l~~~~l~~ 591 (734)
+-.+.|+ |....+++..+.....-| |.||.++ .++..+... +.+.++++||--+..|+...
T Consensus 274 ~~vayLD-G~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs--- 349 (620)
T 2zuy_A 274 AGTAYLD-GERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA--- 349 (620)
T ss_dssp EEEECTT-CC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT---
T ss_pred eeEEecC-CCCceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEee---
Q ss_pred ceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---eEEEEEcCCCCceeEEE-ecCCCeEEEEe---CCCCeEEEEecC
Q psy8875 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---RNMVIVSDIKWPNGLTL-DLVQRRLYWVD---AKLNEISSCDYN 664 (734)
Q Consensus 592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---~~~lv~~~l~~P~glav-D~~~~~LYw~D---~~~~~I~~~~~d 664 (734)
.++|.....||-+..+....+.+.++|... ....+.+.-..|.|+++ |..++.|+|.- ...++-...+++
T Consensus 350 ---~~iD~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Did 426 (620)
T 2zuy_A 350 ---MAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHID 426 (620)
T ss_dssp ---EEECTTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCC
T ss_pred ---eEECCCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecC
No 493
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.37 E-value=1.8e+02 Score=32.08 Aligned_cols=189 Identities=10% Similarity=0.057 Sum_probs=112.4
Q ss_pred CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee--ccCCcEEEEeCC------CCeEE----------EEe
Q psy8875 514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD--WIYSHIYWTDAH------KNTIE----------LAN 575 (734)
Q Consensus 514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD--~~~~~lY~td~~------~~~I~----------~~~ 575 (734)
.+.||+-|..+.+|-|++++.-...+++.-.+.....|+++- +.++.+|-.... .+++. ...
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~ 221 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNA 221 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEE
Confidence 678999999999999999984333444444566677788876 466666654321 11110 011
Q ss_pred CCCCc----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCC-------------ceEEEec---------------cCCC
Q psy8875 576 FEGTM----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQN-------------AKIERAG---------------MDGS 623 (734)
Q Consensus 576 ldG~~----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~-------------~~I~~~~---------------ldG~ 623 (734)
+|+.. -++++.. ++....-|+..++.|+|-.+.. .-|...+ ++|+
T Consensus 222 iD~~tm~v~~Qv~v~g---nld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 222 IDAETMEMAFQVIVDG---NLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EcCCccEEEEEEEcCC---ChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 12211 2233333 4455666888888888864311 1111111 1211
Q ss_pred ceEEEEE--------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC----------CceEEEEcCCCCCC
Q psy8875 624 HRNMVIV--------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG----------GNRRLVLYSPQTLS 679 (734)
Q Consensus 624 ~~~~lv~--------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG----------~~~~~i~~~~~~~~ 679 (734)
...+|-. ..-..|+|+-+++.+.++|.+.-...++..++++- .-+.+++...+...
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 1222211 11257999999999999999998888998888652 22333343333445
Q ss_pred CCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875 680 HPFSISTF-EDWLYWSDWQQKAIYKAN 705 (734)
Q Consensus 680 ~P~gl~v~-~~~lywtd~~~~~v~~~~ 705 (734)
.|.-.+++ .++.|-|-.-...|.+.+
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEECCCCceEeeeeecceEEEEe
Confidence 67777774 478999987777777765
No 494
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=62.98 E-value=2.5 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.585 Sum_probs=26.6
Q ss_pred ccccccCCCCCcCcccc-CCCcceeecC-CCcEecCCCCccc
Q psy8875 389 VDECAKDNGGCLHKCVD-LPVGYMCECN-EGYKLSSNRHTCI 428 (734)
Q Consensus 389 ~~eC~~~~~~C~~~C~~-~~~~~~C~C~-~G~~l~~~~~~C~ 428 (734)
+++|..+++.....|.+ ..++|.|.|+ +|| .|+.|+
T Consensus 1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~----~G~~Ce 38 (587)
T 3nt1_A 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGF----YGENCT 38 (587)
T ss_dssp CCTTTTCCCCTTCEEEEEETTEEEEECTTSSE----ETTTTC
T ss_pred CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCc----cCCCCC
Confidence 35676655444558986 4589999999 999 577886
No 495
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=62.86 E-value=3.9 Score=34.80 Aligned_cols=38 Identities=11% Similarity=-0.312 Sum_probs=27.9
Q ss_pred ceeeeeecceeeeeeecc--eEEEeccccCCCCcCccccCC
Q psy8875 4 KCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYDTF 42 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 42 (734)
.+|||.. +...++.... +.|++|.+....||.+.|.+.
T Consensus 72 ~~~CG~~-p~~~~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~ 111 (114)
T 1sfp_A 72 GKICEGS-LMDYRSSGSIMTVKYIREPEHPASFYEVLYFQD 111 (114)
T ss_dssp EEESEEE-EEEEECSSSEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred eEecCcC-CCCEEecCCeEEEEEEECCCCCCCCEEEEEEEE
Confidence 5899987 4322222222 789999999999999999864
No 496
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=61.44 E-value=2.1 Score=47.87 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=27.0
Q ss_pred CCcccCCCcccC-CCCCccccCC-CCCccCCCcc
Q psy8875 185 SHLCLPAPQINA-HSPKISCACP-EGLKLLPDLL 216 (734)
Q Consensus 185 ~~~C~~~~~~~~-~~~~~~C~C~-~G~~~~~~~~ 216 (734)
+++|.|+++|.+ ..+.|.|.|+ .||.|..|+.
T Consensus 6 s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 39 (587)
T 3nt1_A 6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39 (587)
T ss_dssp TCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence 578999999985 4578999999 9999988765
No 497
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=60.94 E-value=3.6 Score=29.48 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=21.4
Q ss_pred CcccCCCcccC--CCCCccccCCCCCccCCCcc
Q psy8875 186 HLCLPAPQINA--HSPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 186 ~~C~~~~~~~~--~~~~~~C~C~~G~~~~~~~~ 216 (734)
..|+|+ +|.. ....+.|.|+.||.|..++.
T Consensus 14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred CcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence 356776 6653 23568999999999987653
No 498
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=60.73 E-value=5.6 Score=33.52 Aligned_cols=37 Identities=8% Similarity=-0.057 Sum_probs=27.7
Q ss_pred ceeeeeecceeeeeeecc--eEEEeccccCCCCcCccccCC
Q psy8875 4 KCYIGLYIGVLVVIRSVD--ALYRLERSVIDDKIGVDYDTF 42 (734)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 42 (734)
.+|||.- +...++ ... +.|++|.+....||.+.|.+.
T Consensus 68 ~~~CG~~-p~~~~S-~n~l~v~F~Sd~~~~~~GF~~~y~~~ 106 (109)
T 1spp_A 68 GKFCEGL-SILNRG-SSGMTVKYKRDSGHPASPYEIIFLRD 106 (109)
T ss_dssp EEESEEE-EEEEEE-CTTCEEEEEECTTCCCCCCEEEEEEE
T ss_pred hhhhCCC-CCCEEE-CCEEEEEEEeCCCCCCCCEEEEEEEe
Confidence 4899985 332233 333 789999999999999999874
No 499
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=60.20 E-value=5.3 Score=39.99 Aligned_cols=41 Identities=41% Similarity=0.943 Sum_probs=31.5
Q ss_pred cccCcCCC----CCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875 429 DIDECETP----GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470 (734)
Q Consensus 429 ~~~eC~~~----~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~ 470 (734)
+.++|..+ ..|.+.|.|..+++.|.|.+||.+..+.++ |.+
T Consensus 120 ~~~~C~~~~~~~~~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~-C~~ 164 (278)
T 3dem_A 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT-CRV 164 (278)
T ss_dssp ECCTTTC-----CCCSSEEEEETTEEEEECCTTCEECTTSSC-EEC
T ss_pred ccccCCCCCCCcccCCcCcCCccCCcEEEeCCcceeccCCCC-Ccc
Confidence 34556432 378999999999999999999999877655 653
No 500
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=59.52 E-value=3.6 Score=29.49 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=21.4
Q ss_pred CcccCCCccc--CCCCCccccCCCCCccCCCcc
Q psy8875 186 HLCLPAPQIN--AHSPKISCACPEGLKLLPDLL 216 (734)
Q Consensus 186 ~~C~~~~~~~--~~~~~~~C~C~~G~~~~~~~~ 216 (734)
..|+| ++|. ...+.+.|.|+.||.|..|+.
T Consensus 14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred CcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 35666 4553 334567999999999987764
Done!