RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8875
(734 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 489 bits (1260), Expect = e-163
Identities = 239/680 (35%), Positives = 340/680 (50%), Gaps = 89/680 (13%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
F+C G CI WVCDG +C DG DE + C C +F+C C+P W CD
Sbjct: 29 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 88
Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
DC +GSDE+ C +TC EFRC + +CI + CD + DC D SDE
Sbjct: 89 QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE----------- 137
Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGG 237
+CP F+C
Sbjct: 138 -------------------------ASCPV-----------------LTCGPASFQCNSS 155
Query: 238 MCIPSTWVCDGQNDCPDGVDEKKCH-----------ETCRSDEFTCANGNCIQRIWLCDG 286
CIP W CD DC DG DE C + EF C +G CI W CDG
Sbjct: 156 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG 215
Query: 287 DDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTV------EKDSTCPNATP 340
DCKD SDE++C C +F C + CI CD + E
Sbjct: 216 GPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE 274
Query: 341 MNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCL 400
+ + I VC+ DC DE +CG +EC +NGGC
Sbjct: 275 GPNKFKCHSGEC-----------ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 323
Query: 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIK 460
H C DL +GY C C +G++L + C DIDEC+ P +CSQ+C+N +GG+KC+C G+
Sbjct: 324 HVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 382
Query: 461 DPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWS 520
DPH A A L F +H++RK++LD E T+++ + ++ A+D + I+WS
Sbjct: 383 DPHTKACK-AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWS 441
Query: 521 DISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577
D+S++ I +D S VI D DGLAVDWI+S+IYWTD+ T+ +A+ +
Sbjct: 442 DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501
Query: 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637
G RK L R +PR++ ++P+ G+MYW+DWG AKI++ G++G ++ +I+WPN
Sbjct: 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561
Query: 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697
G+TLDL+ RLYWVD+KL+ ISS D NGGNR+ +L + L+HPFS++ FED ++W+D
Sbjct: 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 621
Query: 698 QKAIYKANKFTGDNLTAITG 717
+AI+ AN+ TG ++ +
Sbjct: 622 NEAIFSANRLTGSDVNLLAE 641
Score = 134 bits (339), Expect = 7e-33
Identities = 67/301 (22%), Positives = 98/301 (32%), Gaps = 42/301 (13%)
Query: 43 TSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCR 102
V+ ++ F C G CI S+W CDG DC D DE+ C C +EF C
Sbjct: 182 RGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCS 241
Query: 103 SSPGECVPLTWMCDDNPDCSDGSDEKSCKNRT--CQASEFRCGNNRCIPNHWQCDGEFDC 160
G C+ + CD DC D SDE C N T ++F+C + CI C+ DC
Sbjct: 242 D--GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDC 299
Query: 161 SDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
D SDE + C N C NG CSH+C
Sbjct: 300 RDWSDEPIKECG-TNECLDNNGGCSHVCNDLKI--------------------------- 331
Query: 221 AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE-KKCHETCRSDEFTCANGNCIQ 279
C G + + C+ ++C D + C + C G +
Sbjct: 332 --------GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 383
Query: 280 RI-WLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338
C + K T + +L + + D + +
Sbjct: 384 PHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL 443
Query: 339 T 339
+
Sbjct: 444 S 444
Score = 98.8 bits (245), Expect = 2e-21
Identities = 54/215 (25%), Positives = 71/215 (33%), Gaps = 30/215 (13%)
Query: 244 WVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEK--SCQP 301
W + C +EF C +G CI W+CDG +C+DGSDE +C
Sbjct: 3 WKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 62
Query: 302 VKCTAGQFTCQNLT-ACIPDKWVCDGDTVEKD----STCPNATPMNSSVRIEGAVAFIPP 356
V C +G F+C CIP W CDG + CP T R
Sbjct: 63 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGK----- 117
Query: 357 GFAMAMKIVRTAVCDKHPDCPLMQDE---DPTKCGVDECAKDNGGCLHK---------CV 404
I R VCD DC DE CG ++ C+ + C
Sbjct: 118 ------CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE 171
Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC 439
D + C Y + C + G C
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGEC 206
Score = 62.2 bits (150), Expect = 4e-10
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNS 229
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C +
Sbjct: 660 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT--EAEAAVA 717
Query: 230 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET 264
T T + + ST V D +
Sbjct: 718 TQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGA 752
Score = 38.3 bits (88), Expect = 0.009
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 377 PLMQDEDPTKCGVDECAKDNGGCLHKCVDLPV------GYMCECNEGYKLSSNRHTCIDI 430
L Q C + NGGC + C+ P + C C +G L+ + +C+
Sbjct: 654 NLTQPRGVNWC--ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 711
Query: 431 DECETPGSCSQI 442
E +
Sbjct: 712 AEAAVATQETST 723
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 461 bits (1186), Expect = e-153
Identities = 247/678 (36%), Positives = 349/678 (51%), Gaps = 102/678 (15%)
Query: 48 YWRSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP 105
S F C G CIP W CDGQ DC +G DE+ C + C Q+EF C
Sbjct: 40 ETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD-- 97
Query: 106 GECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSD 165
G+C+ ++CD + DC DGSDE SC TC + F+C ++ CIP W CD + DC D SD
Sbjct: 98 GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 157
Query: 166 EDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKP 225
E P+ C G+ + CS
Sbjct: 158 EWPQRCRGLYVFQGDSSPCS---------------------------------------- 177
Query: 226 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC-HETCRSDEFTCANGNCIQRIWLC 284
+ F C G CI S+W CDG DC D DE+ C TCR DEF C++GNCI C
Sbjct: 178 ---AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234
Query: 285 DGDDDCKDGSDEKSCQPVK--CTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMN 342
D + DCKD SDE C V +F C + CI VC+
Sbjct: 235 DREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNM---------------- 277
Query: 343 SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHK 402
DC DE +CG +EC +NGGC H
Sbjct: 278 ------------------------------ARDCRDWSDEPIKECGTNECLDNNGGCSHV 307
Query: 403 CVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDP 462
C DL +GY C C +G++L + C DIDEC+ P +CSQ+C+N +GG+KC+C G+ DP
Sbjct: 308 CNDLKIGYECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 366
Query: 463 HHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI 522
H A A L F +H++RK++LD E T+++ + ++ A+D + I+WSD+
Sbjct: 367 HTKACK-AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL 425
Query: 523 SEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579
S++ I +D S VI D DGLAVDWI+S+IYWTD+ T+ +A+ +G
Sbjct: 426 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485
Query: 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639
RK L R +PR++ ++P+ G+MYW+DWG AKI++ G++G ++ +I+WPNG+
Sbjct: 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 545
Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
TLDL+ RLYWVD+KL+ ISS D NGGNR+ +L + L+HPFS++ FED ++W+D +
Sbjct: 546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 605
Query: 700 AIYKANKFTGDNLTAITG 717
AI+ AN+ TG ++ +
Sbjct: 606 AIFSANRLTGSDVNLLAE 623
Score = 137 bits (345), Expect = 8e-34
Identities = 65/301 (21%), Positives = 95/301 (31%), Gaps = 42/301 (13%)
Query: 43 TSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCR 102
V+ ++ F C G CI S+W CDG DC D DE+ C C +EF C
Sbjct: 164 RGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCS 223
Query: 103 SSPGECVPLTWMCDDNPDCSDGSDEKSCKN--RTCQASEFRCGNNRCIPNHWQCDGEFDC 160
G C+ + CD DC D SDE C N ++F+C + CI C+ DC
Sbjct: 224 D--GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDC 281
Query: 161 SDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
D SDE + C N C NG CSH+C
Sbjct: 282 RDWSDEPIKECG-TNECLDNNGGCSHVCNDLKI--------------------------- 313
Query: 221 AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK-KCHETCRSDEFTCANGNCIQ 279
C G + + C+ ++C D C + C G +
Sbjct: 314 --------GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 365
Query: 280 RIWLC-DGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338
+ K T + +L + + D + +
Sbjct: 366 PHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL 425
Query: 339 T 339
+
Sbjct: 426 S 426
Score = 57.1 bits (137), Expect = 1e-08
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 168 PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
P N NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 640 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692
Score = 37.9 bits (87), Expect = 0.012
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 377 PLMQDEDPTKCGVDECAKDNGGCLHKCVDLPV------GYMCECNEGYKLSSNRHTCIDI 430
L Q C + NGGC + C+ P + C C +G L+ + +C+
Sbjct: 636 QLTQPRGVNWC--ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 693
Query: 431 DEC 433
E
Sbjct: 694 AEA 696
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 330 bits (846), Expect = e-107
Identities = 139/330 (42%), Positives = 204/330 (61%), Gaps = 4/330 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
G + C +NGGC KC + C C+ GY+L+ + TC D++EC G CSQ C N +
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 448 GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATA 507
G F+C C AGY P + CKA LLFA + DIR++ E T ++N+ ++A A
Sbjct: 62 GAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH 567
+DF R ++FWSD++ +I +A ++ GS V+ GLAVDW++ +YWTD+
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG 179
Query: 568 KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627
+ IE+AN +G RKVL+ L++PR++AL+P++G +YW+DWG +IE + MDGS R +
Sbjct: 180 TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239
Query: 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687
+ + + WPNGLT+D RR+YWVDAK + I + +G +R+ V+ L HPF+I+ F
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF 297
Query: 688 EDWLYWSDWQQKAIYKANKFTGDNLTAITG 717
ED LYW+DW K+I ANKFTG N I
Sbjct: 298 EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327
Score = 89.1 bits (220), Expect = 4e-19
Identities = 78/424 (18%), Positives = 137/424 (32%), Gaps = 70/424 (16%)
Query: 267 SDEFTCA--NGNCIQRIWLCDGDDDC------KDGSDEKSCQPVKCTAGQFTCQNLTACI 318
+ E C NG C Q+ + G C + D ++CQ V A + C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 319 PDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPL 378
+ C C + PD
Sbjct: 61 EGAFQCW---------CEAGYELR-------------------------------PDRRS 80
Query: 379 MQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGS 438
+ P + D L + + N +R + +
Sbjct: 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV---TL 137
Query: 439 CSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLF---ARKHDIRKISLDHHEM 495
+ N G E V+ ++ P A + L+ + I +LD
Sbjct: 138 DRILRANLNGSNVEEVVSTGLESPGGL----AVDWVHDKLYWTDSGTSRIEVANLDGAHR 193
Query: 496 TAIVNST-KSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVVIEEDKTIADGLA 553
++ + + AI G I+W+D +I + +D GS R ++ + +GL
Sbjct: 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNGLT 252
Query: 554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA 613
+D+ +YW DA + IE AN +G+ RK ++ L P ++ + + +YW+DW +
Sbjct: 253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKS 310
Query: 614 KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY 673
I A +I + + +P + QR+ + D NGG L L
Sbjct: 311 -INSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRC------GDNNGGCTHLCLP 363
Query: 674 SPQT 677
S Q
Sbjct: 364 SGQN 367
Score = 42.1 bits (98), Expect = 5e-04
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 9/118 (7%)
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMF 232
G +C NG C+ C + C C G +L D C + C
Sbjct: 2 GEENCNVNNGGCAQKCQMIRG------AVQCTCHTGYRLTEDGRTCQD--VNECAEEGYC 53
Query: 233 RCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDC 290
G + C + D + C AN I+++ +
Sbjct: 54 S-QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTL 110
Score = 42.1 bits (98), Expect = 6e-04
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 170 MCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
G N C NG C+HLCLP+ Q +CACP G + + + CA+
Sbjct: 343 QPAGKNRCGDNNGGCTHLCLPSGQ------NYTCACPTGFRKI-NSHACAQ 386
Score = 39.0 bits (90), Expect = 0.005
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI 428
G + C +NGGC H C+ Y C C G++ ++ H C
Sbjct: 339 HPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINS-HACA 385
Score = 36.3 bits (83), Expect = 0.036
Identities = 23/175 (13%), Positives = 44/175 (25%), Gaps = 38/175 (21%)
Query: 125 SDEKSCKNRTCQASEFRCGNN------------RCIPNHWQCDGEFDCSDKSDEDPEMCN 172
+ E++C ++ +C R + C +C++
Sbjct: 1 TGEENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE---------- 49
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMF 232
G+CS C + C C G +L PD +A
Sbjct: 50 --------EGYCSQGCTNSE------GAFQCWCEAGYELRPD-RRSCKALGPEPVLLFAN 94
Query: 233 RCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGD 287
R +P + + H ++ + I R L +
Sbjct: 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 149
Score = 32.8 bits (74), Expect = 0.39
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 436 PGSCSQICLNEKGGFKCECVAGY 458
G C+ +CL + C C G+
Sbjct: 354 NGGCTHLCLPSGQNYTCACPTGF 376
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 314 bits (805), Expect = e-100
Identities = 143/329 (43%), Positives = 218/329 (66%), Gaps = 5/329 (1%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG 449
+EC +NGGC H C DL +GY C C +G++L + R C DIDEC+ P +CSQ+C+N +GG
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGG 59
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509
+KC+C G+ DPH CKA A L F +H++RK++LD E T+++ + ++ A+D
Sbjct: 60 YKCQCEEGFQLDPHT-KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 510 FVFRTGMIFWSDISEKKIYKAPID---EGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
+ I+WSD+S++ I +D S VI D DGLAVDWI+S+IYWTD+
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
T+ +A+ +G RK L R +PR++ ++P+ G+MYW+DWG AKI++ G++G
Sbjct: 179 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238
Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
++ +I+WPNG+TLDL+ RLYWVD+KL+ ISS D NGGNR+ +L + L+HPFS++
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298
Query: 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715
FED ++W+D +AI+ AN+ TG ++ +
Sbjct: 299 FEDKVFWTDIINEAIFSANRLTGSDVNLL 327
Score = 83.7 bits (206), Expect = 3e-17
Identities = 56/375 (14%), Positives = 110/375 (29%), Gaps = 66/375 (17%)
Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKD-GSDEKSCQPVKCTAGQFTCQNLTACIP 319
C++ E C +G + C+ D+C+D + + C G + C
Sbjct: 14 CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN---LEGGYKC-------- 62
Query: 320 DKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLM 379
C ++ + AV I F VR D+ L+
Sbjct: 63 --------------QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI 108
Query: 380 QDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC 439
+ E A + + S+ T I D
Sbjct: 109 PNLRNVVALDTEVASNRIYWSDLSQR---MICSTQLDRAHGVSSYDTVISRD-------- 157
Query: 440 SQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLF---ARKHDIRKISLDHHEMT 496
+ G D H S ++ + + +
Sbjct: 158 ------------IQAPDGLAVDWIH-----------SNIYWTDSVLGTVSVADTKGVKRK 194
Query: 497 AIVNST-KSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVVIEEDKTIADGLAV 554
+ AI G ++W+D KI K ++ G + ++ E+ +G+ +
Sbjct: 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITL 253
Query: 555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK 614
D + +YW D+ ++I + G RK ++ +L + ++W+D A
Sbjct: 254 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 313
Query: 615 IERAGMDGSHRNMVI 629
+ GS N++
Sbjct: 314 FSANRLTGSDVNLLA 328
Score = 59.1 bits (142), Expect = 2e-09
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 168 PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
P N NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 346 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 44.8 bits (105), Expect = 7e-05
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
I+K L+ ++ ++V + I +G ++W D I ++ G R ++E
Sbjct: 227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE 285
Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELAN-FEGTMRKVLVRS 587
++K +A ++ ++WTD I AN G+ +L +
Sbjct: 286 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
Score = 40.6 bits (94), Expect = 0.001
Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 17/130 (13%)
Query: 175 NHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLM-----CAEAG--SKPCR 227
N C NG CSH+C C CP+G +L+ C + S+ C
Sbjct: 1 NECLDNNGGCSHVCNDLK------IGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCV 54
Query: 228 NST-MFRCTGGMCI---PSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWL 283
N ++C P T C + + + + +
Sbjct: 55 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114
Query: 284 CDGDDDCKDG 293
D +
Sbjct: 115 VALDTEVASN 124
Score = 37.1 bits (85), Expect = 0.017
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 391 ECAKDNGGCLHKCVDLPV------GYMCECNEGYKLSSNRHTCI 428
NGGC + C+ P + C C +G L+ + +C+
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
Score = 30.6 bits (68), Expect = 2.1
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 6/162 (3%)
Query: 101 CRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDC 160
C + G C + +C + R C+ + + C +G + C
Sbjct: 3 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 62
Query: 161 SDKS----DEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLL 216
+ D + C V A + H + + + L ++
Sbjct: 63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 122
Query: 217 MCAEAGSKPCRNSTMFRCTGGMCIPSTW--VCDGQNDCPDGV 256
S + S++ V PDG+
Sbjct: 123 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 164
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 302 bits (776), Expect = 4e-98
Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 11/253 (4%)
Query: 477 LLFARKHDIRKISLDHHEMTAIVNST------KSATAIDFVFRTGMIFWSDISEKKIYKA 530
LLFA+ I ++ L+ + M K + F +++W+DISE I +A
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
+ G E T +I +D +G+A+D + I+WTD+ + IE+A +GT R+VL + L
Sbjct: 64 SLH-GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 591 EPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY 649
PR + +P+ G +YW+DW + N KIE + MDG++R ++ ++ PNGLT D +L
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182
Query: 650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG 709
WVDA + + RR VL + L +PF+++++ LY++DW+ ++ +
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239
Query: 710 DNLTAITGVHQTH 722
+ QT
Sbjct: 240 KEMDTFHPHKQTR 252
Score = 41.4 bits (97), Expect = 7e-04
Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT 539
A H ++ ++ + A+ + ++++D + + E
Sbjct: 186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVT-SYG-KNLYYTDWKTNSVIAMDLAISKEMD 243
Query: 540 VVIEEDKTIADGLAV 554
+T G+ +
Sbjct: 244 TFHPHKQTRLYGITI 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 273 bits (699), Expect = 4e-86
Identities = 103/253 (40%), Positives = 163/253 (64%), Gaps = 5/253 (1%)
Query: 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
A L F +H++RK++LD E T+++ + ++ A+D + I+WSD+S++ I +D
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 535 G---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
S VI D DGLAVDWI+S+IYWTD+ T+ +A+ +G RK L R +
Sbjct: 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
PR++ ++P+ G+MYW+DWG AKI++ G++G ++ +I+WPNG+TLDL+ RLYWV
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
D+KL+ ISS D NGGNR+ +L + L+HPFS++ FED ++W+D +AI+ AN+ TG +
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241
Query: 712 LTAITGVHQTHEP 724
+ + P
Sbjct: 242 VNLL--AENLLSP 252
Score = 62.0 bits (150), Expect = 1e-10
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
GVN C NG C +LCLPAPQIN HSPK +CACP+G+ L D+ C
Sbjct: 266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
Score = 55.4 bits (133), Expect = 2e-08
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
I+K L+ ++ ++V + I +G ++W D I ++ G R ++E
Sbjct: 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE 203
Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSL 595
++K +A ++ ++WTD I AN L+ L P +
Sbjct: 204 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 255
Score = 43.5 bits (102), Expect = 2e-04
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 369 VCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPV------GYMCECNEGYKLSS 422
D L Q C NGGC + C+ P + C C +G L+
Sbjct: 252 PEDMVLFHNLTQPRGVNWCE--RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 309
Query: 423 NRHTCI 428
+ +C+
Sbjct: 310 DMRSCL 315
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 265 bits (677), Expect = 2e-82
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 5/295 (1%)
Query: 430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKIS 489
++EC G CSQ C N +G F+C C AGY P CKA LLFA + DIR++
Sbjct: 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDR-RSCKALGPEPVLLFANRIDIRQVL 59
Query: 490 LDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549
E T ++N+ ++A A+DF R ++FWSD++ +I +A ++ GS V+
Sbjct: 60 PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESP 118
Query: 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW 609
GLAVDW++ +YWTD+ + IE+AN +G RKVL+ L++PR++AL+P++G +YW+DW
Sbjct: 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178
Query: 610 GQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669
G +IE + MDGS R ++ + + WPNGLT+D RR+YWVDAK + I + +G +R+
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI-TGVHQTHE 723
V+ L HPF+I+ FED LYW+DW K+I ANKFTG N I +H +
Sbjct: 239 AVISQ--GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 291
Score = 46.8 bits (110), Expect = 2e-05
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 170 MCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
G N C NG C+HLCLP+ Q +CACP G + + E
Sbjct: 300 QPAGKNRCGDNNGGCTHLCLPSGQ------NYTCACPTGFRKINSHACALE 344
Score = 42.2 bits (98), Expect = 4e-04
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430
G + C +NGGC H C+ Y C C G++ ++ +++
Sbjct: 296 HPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALEV 345
Score = 32.9 bits (74), Expect = 0.38
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQI 442
D ++ K G K ++ + + + L R + G C+ +
Sbjct: 262 DWHTKSINSANKFTG----KNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHL 317
Query: 443 CLNEKGGFKCECVAGY 458
CL + C C G+
Sbjct: 318 CLPSGQNYTCACPTGF 333
Score = 31.4 bits (70), Expect = 0.97
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 8/110 (7%)
Query: 174 VNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFR 233
VN CA G+CS C + C C G +L PD C G +P R
Sbjct: 1 VNECAE-EGYCSQGCTNSEG------AFQCWCEAGYELRPDRRSCKALGPEPVLLFAN-R 52
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWL 283
+P + + H ++ + I R L
Sbjct: 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL 102
Score = 28.3 bits (62), Expect = 8.7
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT 539
A+ H I + +LD A+++ ++W+D K I A G +
Sbjct: 222 AKHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWHTKSINSANKFTGKNQE 280
Query: 540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKN 569
++ + D + N
Sbjct: 281 IIRNKLHFPMDIHTLHPQRQPAGKNRCGDN 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 258 bits (660), Expect = 2e-80
Identities = 109/245 (44%), Positives = 157/245 (64%), Gaps = 4/245 (1%)
Query: 473 GHASLLFARKHDIRKISL--DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKA 530
LL+A + D+R + T +V + A A+DFVF G+I+WSD+SE+ I +
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
++ V+ DGLA DW+ +YWTD+ N IE++N +G++RKVL LD
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYW 650
+PR++AL+P G+MYW+DWG+ KIERAGMDGS R ++I S+I WPNGLTLD +++LYW
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 182
Query: 651 VDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710
DAKLN I + +G NR+ V+ +L HPF+++ FED LYW+DW +I NK+TG+
Sbjct: 183 ADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240
Query: 711 NLTAI 715
L I
Sbjct: 241 GLREI 245
Score = 117 bits (293), Expect = 6e-29
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSAT----AIDFVFRTGMIFWSDISEKKIYKAPIDEGSER 538
I++ + E V + + A D++ ++W+D +I + +D GS R
Sbjct: 57 EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL--GEKLYWTDSETNRIEVSNLD-GSLR 113
Query: 539 TVVIEEDKTIADGLAVDWIYSHIYWTDAHKN-TIELANFEGTMRKVLVRSYLDEPRSLAL 597
V+ ++ +A+D +YWTD + IE A +G+ R +++ S + P L L
Sbjct: 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL 173
Query: 598 NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657
+ + +YW+D N I ++ +DG++R V+ + P LTL + LYW D +
Sbjct: 174 DYEEQKLYWADAKLN-FIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHS 230
Query: 658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687
I +C+ G ++S + P I F
Sbjct: 231 ILACNKYTGEGLREIHS--DIFSPMDIHAF 258
Score = 50.8 bits (121), Expect = 7e-07
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGS 223
N N C NG CSHLCL +P P CACP G+KLL + C + S
Sbjct: 265 NATNPCGIDNGGCSHLCLMSP----VKPFYQCACPTGVKLLENGKTCKDGNS 312
Score = 50.1 bits (119), Expect = 1e-06
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 373 HPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPV--GYMCECNEGYKLSSNRHTCIDI 430
P + + C DNGGC H C+ PV Y C C G KL N TC D
Sbjct: 251 SPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Query: 431 DECETP 436
+
Sbjct: 311 NSHHHH 316
Score = 32.4 bits (73), Expect = 0.48
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 417 GYKLSSNRHTCIDIDECETPGSCSQICLN--EKGGFKCECVAGYIKDPHHPTQCKAAEGH 474
+ S R G CS +CL K ++C C G + T CK H
Sbjct: 255 IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT-CKDGNSH 313
Query: 475 A 475
Sbjct: 314 H 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 261 bits (667), Expect = 7e-78
Identities = 107/341 (31%), Positives = 172/341 (50%), Gaps = 10/341 (2%)
Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQI 442
D + + C K G L + M + S R G CS +
Sbjct: 230 DWSTHSILACNKYTGEGLREIHSDIFSPMD----IHAFSQQRQPNATNPCGIDNGGCSHL 285
Query: 443 CLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---V 499
CL +C + LL AR+ D+R+ISLD + T I +
Sbjct: 286 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL 345
Query: 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559
+ A AID+ G I+W+D + I ++ ID GS V+ DG+AVDW+
Sbjct: 346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIAVDWVAR 404
Query: 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAG 619
++YWTD + IE+ GTMRK+L+ L+EPR++ L+P+ G+MYW+DWG+ KIERA
Sbjct: 405 NLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464
Query: 620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLS 679
+DGS R +++ + + WPNGL LD + ++YW DAK ++I + +G RR+++ +
Sbjct: 465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--IP 522
Query: 680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQ 720
H F + D++YW+DWQ+++I + +K + + I +
Sbjct: 523 HIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPD 563
Score = 255 bits (651), Expect = 1e-75
Identities = 111/255 (43%), Positives = 160/255 (62%), Gaps = 7/255 (2%)
Query: 463 HHPTQCKAAEGHASLLFARKHDIRKISLDHH--EMTAIVNSTKSATAIDFVFRTGMIFWS 520
HH LL+A + D+R + + T +V + A A+DFVF G+I+WS
Sbjct: 1 HH---HHHHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWS 57
Query: 521 DISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580
D+SE+ I + ++ V+ DGLA DW+ +YWTD+ N IE++N +G++
Sbjct: 58 DVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117
Query: 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640
RKVL LD+PR++AL+P G+MYW+DWG+ KIERAGMDGS R ++I S+I WPNGLT
Sbjct: 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 177
Query: 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKA 700
LD +++LYW DAKLN I + +G NR+ V+ +L HPF+++ FED LYW+DW +
Sbjct: 178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHS 235
Query: 701 IYKANKFTGDNLTAI 715
I NK+TG+ L I
Sbjct: 236 ILACNKYTGEGLREI 250
Score = 138 bits (348), Expect = 2e-34
Identities = 76/328 (23%), Positives = 124/328 (37%), Gaps = 13/328 (3%)
Query: 379 MQDEDPTKCGVDECAKDNGGCLHKCVDLPV--GYMCECNEGYKLSSNRHTCIDIDECETP 436
+ + C DNGGC H C+ PV Y C C G KL N TC D
Sbjct: 262 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321
Query: 437 GS----CSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDH 492
+ +I L+ I+ EG+ IR+ +D
Sbjct: 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAID-YDPVEGYIYWTDDEVRAIRRSFIDG 380
Query: 493 HEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551
+V + I + ++W+D +I ++ G+ R ++I ED
Sbjct: 381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN-GTMRKILISEDLEEPRA 439
Query: 552 LAVDWIYSHIYWTDAHKN-TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG 610
+ +D + ++YWTD + IE A +G+ R VLV + L P LAL+ +G +YW D
Sbjct: 440 IVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK 499
Query: 611 QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRL 670
+ KIE DG+ R +++ I G TL +YW D + I R +
Sbjct: 500 TD-KIEVMNTDGTGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREV 556
Query: 671 VLYSPQTLSHPFSISTFEDWLYWSDWQQ 698
++ L + + ++
Sbjct: 557 IIDQLPDLMGLKATNVHRVIGSNPCAEE 584
Score = 51.4 bits (122), Expect = 8e-07
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 155 DGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPD 214
D D + G N CA NG CSHLCL PQ + CACP G +L+ D
Sbjct: 559 DQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQ------GLRCACPIGFELISD 612
Query: 215 LLMC 218
+ C
Sbjct: 613 MKTC 616
Score = 50.6 bits (120), Expect = 1e-06
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
I + +LD + +VN++ + + G I+W D KI D G+ R V++E
Sbjct: 460 IERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD-GTGRRVLVE 518
Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW 603
+ G + ++YWTD + +IE + R+V++ D A N
Sbjct: 519 DKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVI 576
Query: 604 MYWSDWGQN 612
+N
Sbjct: 577 GSNPCAEEN 585
Score = 49.4 bits (117), Expect = 3e-06
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 366 RTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRH 425
+ L G + CA++NGGC H C+ P G C C G++L S+
Sbjct: 555 EVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMK 614
Query: 426 TCI 428
TCI
Sbjct: 615 TCI 617
Score = 36.7 bits (84), Expect = 0.025
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 433 CETPGSCSQICLNEKGGFKCECVAGYIKDPHHPT 466
E G CS +CL G +C C G+ T
Sbjct: 582 AEENGGCSHLCLYRPQGLRCACPIGFELISDMKT 615
Score = 32.9 bits (74), Expect = 0.44
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 163 KSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAG 222
+ N N C NG CSHLCL +P P CACP G+KLL + C +
Sbjct: 261 HAFSQQRQPNATNPCGIDNGGCSHLCLMSP----VKPFYQCACPTGVKLLENGKTCKDGA 316
Query: 223 SKPCRNS--TMFRCTGGMCIPSTWVCDGQNDCPDGVD 257
++ + T R T + D +
Sbjct: 317 TELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 252 bits (645), Expect = 1e-74
Identities = 89/318 (27%), Positives = 148/318 (46%), Gaps = 16/318 (5%)
Query: 411 MCECNEGYKLSSNRHTCIDIDECETP-GSCSQICL-NEKGGFKCECVAGYIKDPHHPTQC 468
L + +EC + G CS +CL GGF C C A Y + + T
Sbjct: 246 GHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS 305
Query: 469 KAAEGHASLLFARKHDIRKISLDHHEMTAI---VNSTKSATAIDFVFRTGMIFWSDISEK 525
F++K I ++ +D + I ++S ++ AID+ ++W D +
Sbjct: 306 APTTFLL---FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQN 362
Query: 526 KIYKAPIDEGSERTVVI-----EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580
I KA D TVV+ + + L++D +IYWT N I + +G
Sbjct: 363 MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS 422
Query: 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSHRNMVIVSDIKWPNGL 639
V+++ D PR++ +NP G+MY+++ + + KIERA +DG+ R ++ S + P L
Sbjct: 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIAL 482
Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
LD +L+W D+ L I S D +G NR ++ S + P ++ FE+WLYW D QQ+
Sbjct: 483 ALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSN--ILQPVGLTVFENWLYWIDKQQQ 540
Query: 700 AIYKANKFTGDNLTAITG 717
I K + + T +
Sbjct: 541 MIEKIDMTGREGRTKVQA 558
Score = 248 bits (635), Expect = 4e-73
Identities = 102/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 475 ASLLFARKHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI 532
A LLF+R+ DIR+ISL+ + + K A+A+DF I+W+DIS K I +A +
Sbjct: 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFM 66
Query: 533 DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEP 592
+ GS V+E +G+AVDW+ ++YW D N IE++ +G R+VLV LD P
Sbjct: 67 N-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 125
Query: 593 RSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD 652
R+LAL+P +G+MYW++WG KI+RA MDGS R +V ++ NGLT+D +RRLYW D
Sbjct: 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTD 184
Query: 653 AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNL 712
N I S + G NR ++ L HPF ++ ++D++YW+DW +++I +ANK +G N
Sbjct: 185 LDTNLIESSNMLGLNREVIA---DDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241
Query: 713 TAIT 716
T I
Sbjct: 242 TIIQ 245
Score = 73.3 bits (179), Expect = 1e-13
Identities = 59/294 (20%), Positives = 103/294 (35%), Gaps = 56/294 (19%)
Query: 485 IRKISLD-HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVVI 542
I LD H + S A+ G ++W++ K KI +A +D GSERT ++
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTLV 162
Query: 543 EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG 602
+GL +D+ +YWTD N IE +N G R+V+ L P L
Sbjct: 163 PNVGRA-NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD-LPHPFGLTQY--QD 218
Query: 603 WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD---------- 652
++YW+DW + + IERA +I + + + + R+ W +
Sbjct: 219 YIYWTDWSRRS-IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277
Query: 653 ------------------------------------AKLNEISSCDYNGGNRRLVLYSPQ 676
++ + I+ + ++
Sbjct: 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337
Query: 677 TLSHPFSI--STFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728
+L + +I + LYW D +Q I KA + T + + P
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 391
Score = 50.2 bits (119), Expect = 2e-06
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
I + +LD E + S A+ R G +FW+D ++I + + G+ R V+ +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLED 516
Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW 603
+ GL V + +YW D + IE + G + V++ + + +
Sbjct: 517 SNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL 574
Query: 604 MYWSDW 609
+
Sbjct: 575 QEYRQH 580
Score = 46.0 bits (108), Expect = 4e-05
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 168 PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
+ CA NG CSH+CL C+CP L LL D L C
Sbjct: 573 NLQEYRQHPCAQDNGGCSHICLVKGDGTT-----RCSCPMHLVLLQDELSCGG 620
Score = 43.3 bits (101), Expect = 3e-04
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 371 DKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCID 429
+ D +++ + + CA+DNGGC H C+ G C C L + +C
Sbjct: 561 AQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
Query: 430 IDEC 433
Sbjct: 621 TKHH 624
Score = 37.1 bits (85), Expect = 0.020
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 130 CKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCL 189
R+ + + G NR I D +G N CA+ NGHCSHLCL
Sbjct: 225 WSRRSIERANKTSGQNRTIIQG----HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCL 280
Query: 190 PAPQINAHSPKISCACPEGLKLLPDLLMC 218
P C CP L D C
Sbjct: 281 AVPVGGFV-----CGCPAHYSLNADNRTC 304
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 161 bits (408), Expect = 1e-44
Identities = 25/242 (10%), Positives = 79/242 (32%), Gaps = 24/242 (9%)
Query: 476 SLLFARKHDIRKISLDHHEMTAIVNSTKSATAI--DFVFRTGMIFWSDISEKKIYKAPID 533
+ ++ + +I + H T + ++ ++++ + + + +Y+ ID
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIY---YLHYDTQTATSLYRIRID 137
Query: 534 EGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPR 593
G E+ + + + Y+ + + + + +P
Sbjct: 138 -GEEKKKIKNHY-----LFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPV 191
Query: 594 SLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653
L D +Y+ D ++ I ++ + ++ ++I+ N Y
Sbjct: 192 VLD----DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYG----SLIFYQRGG 243
Query: 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLT 713
+ +G + + +I+ ++Y++D+ Y + D +
Sbjct: 244 DNPALCVVKNDGTGFKELAK-----GEFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIK 298
Query: 714 AI 715
A+
Sbjct: 299 AL 300
Score = 82.8 bits (204), Expect = 2e-17
Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 28/214 (13%)
Query: 515 GMIFWSDISEK-KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL 573
G +F+S+ ++ ++Y ID GS + + A + D +++Y+ + I
Sbjct: 26 GEVFFSNTNDNGRLYAMNID-GSNIHKLSNDT---AMYINADK--NYVYYVRNNNQKITS 79
Query: 574 ANFEGTMRKVLVRSYLD--------EPRSLALNPIDGWMYWSDW--GQNAKIERAGMDGS 623
F R L R + + + I ++Y+ + + R +DG
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE 139
Query: 624 HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFS 683
+ + + T + R Y+ + K ++ D + L P
Sbjct: 140 EKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN--CYKPVV 192
Query: 684 ISTFEDWLYWSDWQQKA-IYKANKFTGDNLTAIT 716
+ + +Y+ D + I N N +T
Sbjct: 193 LD--DTNVYYMDVNRDNAIVHVNI-NNPNPVVLT 223
Score = 56.3 bits (135), Expect = 1e-08
Identities = 18/194 (9%), Positives = 60/194 (30%), Gaps = 35/194 (18%)
Query: 555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW----- 609
++ + + N +G+ L ++ +N ++Y+
Sbjct: 26 GEVF---FSNTNDNGRLYAMNIDGSNIHKLS-----NDTAMYINADKNYVYYVRNNNQKI 77
Query: 610 -------GQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV---DAKLNEIS 659
+ R +G ++ + L+ +Y++ +
Sbjct: 78 TSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYA-----SLIGNYIYYLHYDTQTATSLY 132
Query: 660 SCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH 719
+G ++ + F+ +T + + Y+++ + +Y+ + + +
Sbjct: 133 RIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYD-TASQSEALFYDCN 186
Query: 720 QTHEPLNSPGTNEY 733
++P+ TN Y
Sbjct: 187 -CYKPVVLDDTNVY 199
Score = 44.3 bits (104), Expect = 8e-05
Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 19/144 (13%)
Query: 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVI---VSDIKWPNG-----LTLDLVQRRLYWVD 652
DG +++S+ N ++ +DGS+ + + I + +
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFS 84
Query: 653 AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW---QQKAIYKANKFTG 709
N + NG ++ P + +++Y+ + ++Y+ G
Sbjct: 85 YDRNSLCRIKRNGHGSTVLDPDPCIYASL-----IGNYIYYLHYDTQTATSLYRIRI-DG 138
Query: 710 DNLTAITGVHQTHEPLNSPGTNEY 733
+ I + N+ Y
Sbjct: 139 EEKKKIK--NHYLFTCNTSDRYFY 160
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 112 bits (282), Expect = 5e-30
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNH 151
+ C Q EF C G+C+ ++CD + DC DGSDE SC TC + F+C ++ CIP
Sbjct: 1 KTCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL 58
Query: 152 WQCDGEFDCSDKSDEDPEMCNG 173
W CD + DC D SDE P+ C G
Sbjct: 59 WACDNDPDCEDGSDEWPQRCRG 80
Score = 102 bits (257), Expect = 1e-26
Identities = 33/70 (47%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE-TCRSDEFTCANGNCIQRIWLCDGDDDC 290
FRC G CI +VCD DC DG DE C TC F C + CI ++W CD D DC
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC 67
Query: 291 KDGSDEKSCQ 300
+DGSDE +
Sbjct: 68 EDGSDEWPQR 77
Score = 99.7 bits (249), Expect = 1e-25
Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNP 119
FRC G CI +VCD DC DG DE C CG F C S C+P W CD++P
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS--STCIPQLWACDNDP 65
Query: 120 DCSDGSDEKSCK 131
DC DGSDE +
Sbjct: 66 DCEDGSDEWPQR 77
Score = 93.9 bits (234), Expect = 2e-23
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 263 ETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKW 322
+TC EF C +G CI R ++CD D DC DGSDE SC + C F C + + CIP W
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS-STCIPQLW 59
Query: 323 VCDGD 327
CD D
Sbjct: 60 ACDND 64
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 104 bits (261), Expect = 7e-27
Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 375 DCPLMQDEDPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
D P ++ G +EC +NGGC + C DL +GY C C +G++L + R C DIDEC
Sbjct: 14 DIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDEC 72
Query: 434 ETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469
+ P +CSQ+C+N +GG+KC+C G+ DPH CK
Sbjct: 73 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CK 107
Score = 60.8 bits (148), Expect = 2e-11
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEKGGFKCECVAGY 458
H Y E + +EC G CS +C + K G++C C G+
Sbjct: 4 HHHHHPMSDYDIPTTENLYF----QGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGF 58
Score = 44.6 bits (106), Expect = 6e-06
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 154 CDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLP 213
++D + + G N C NG CS++C + C CP+G +L+
Sbjct: 9 PMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLK----IGYE--CLCPDGFQLVA 62
Query: 214 D 214
Sbjct: 63 Q 63
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 102 bits (257), Expect = 1e-26
Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 223 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC---HETCRSDEFTCANGNCIQ 279
++ C F C G CIP +W CD +DC D DE +FTC NG CI
Sbjct: 2 ARTCP-PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 280 RIWLCDGDDDCKDGSDEKSC 299
W CD D+DC D SDE C
Sbjct: 61 INWRCDNDNDCGDNSDEAGC 80
Score = 98.1 bits (245), Expect = 4e-25
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC--KNRTCQASEFRCGNNRCIPNH 151
C +F+C S G C+P++W CD + DC D SDE + ++F C N RCI +
Sbjct: 5 CPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62
Query: 152 WQCDGEFDCSDKSDE 166
W+CD + DC D SDE
Sbjct: 63 WRCDNDNDCGDNSDE 77
Score = 94.7 bits (236), Expect = 9e-24
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC--QKRICGQEEFTCRSSPGEC 108
++ C F C G CIP +W CD +DC D DE +FTC + G C
Sbjct: 2 ARTCP-PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN--GRC 58
Query: 109 VPLTWMCDDNPDCSDGSDEKSCKN 132
+ + W CD++ DC D SDE C +
Sbjct: 59 ININWRCDNDNDCGDNSDEAGCSH 82
Score = 88.1 bits (219), Expect = 2e-21
Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVK--CTAGQFTCQNLTACIPDK 321
TC ++F+CA+G CI W CD DDDC D SDE + QFTC N CI
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN-GRCININ 62
Query: 322 WVCDGD 327
W CD D
Sbjct: 63 WRCDND 68
Score = 85.4 bits (212), Expect = 2e-20
Identities = 35/129 (27%), Positives = 40/129 (31%), Gaps = 51/129 (39%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAP 192
RTC ++F C + RCIP W CD + DC D+SDE
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCA--------------------- 41
Query: 193 QINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDC 252
C T F C G CI W CD NDC
Sbjct: 42 ------------------------------YPTCFPLTQFTCNNGRCININWRCDNDNDC 71
Query: 253 PDGVDEKKC 261
D DE C
Sbjct: 72 GDNSDEAGC 80
Score = 26.5 bits (59), Expect = 9.9
Identities = 18/104 (17%), Positives = 23/104 (22%), Gaps = 52/104 (50%)
Query: 304 CTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMK 363
C QF+C + CIP W CD D
Sbjct: 5 CPPNQFSCAS-GRCIPISWTCDLD------------------------------------ 27
Query: 364 IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKD-----NGGCLHK 402
DC DE + NG C++
Sbjct: 28 ----------DDCGDRSDESASCAYPTCFPLTQFTCNNGRCINI 61
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 105 bits (262), Expect = 1e-23
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 5/147 (3%)
Query: 60 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNP 119
+ C + G D D V + + F C + G+ + CD
Sbjct: 171 LETSLAECTFTKRRTMGYQDFADVVCYTQKADS-PMDDFFQCVN--GKYISQMKACDGIN 227
Query: 120 DCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAA 179
DC D SDE C + CQ F C + CIP+ +QC+GE DC DE
Sbjct: 228 DCGDQSDELCC--KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEE 285
Query: 180 VNGHCSHLCLPAPQINAHSPKISCACP 206
+ + +I + PK+SC
Sbjct: 286 TEILTADMDAERRRIKSLLPKLSCGVK 312
Score = 104 bits (261), Expect = 1e-23
Identities = 54/280 (19%), Positives = 80/280 (28%), Gaps = 43/280 (15%)
Query: 59 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDN 118
+F CI T VC CP K +C RS P C + C
Sbjct: 28 VFCQPWQRCIEGTCVCKLPYQCP------KNGTAVCAT---NRRSFPTYCQQKSLECLHP 78
Query: 119 PDCSDGSDEKSCKNRTCQASEFRCGNNR-----CIPNHWQCDGEFDCSDKSDEDPEMCNG 173
+ + +C + + GN + Q F C
Sbjct: 79 --GTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSM------- 129
Query: 174 VNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFR 233
N C L + + + C
Sbjct: 130 ----REANVACLDLGFQQGA--DTQRRFKLSDLSINSTECLHVHC-----------RGLE 172
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDG 293
+ C + G D D V + ++ D F C NG I ++ CDG +DC D
Sbjct: 173 TSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQ 232
Query: 294 SDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS 333
SDE C C F C++ CIP ++ C+G+
Sbjct: 233 SDELCC--KACQGKGFHCKS-GVCIPSQYQCNGEVDCITG 269
Score = 79.2 bits (195), Expect = 2e-15
Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVP 110
F+C G I CDG NDC D DE C+ C + F C+S G C+P
Sbjct: 200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKGFHCKS--GVCIP 255
Query: 111 LTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
+ C+ DC G DE C + + S
Sbjct: 256 SQYQCNGEVDCITGEDEVGCAGFAS----VAQEETEILTADMDAERRRIKSLLPKLS 308
Score = 78.4 bits (193), Expect = 3e-15
Identities = 39/236 (16%), Positives = 55/236 (23%), Gaps = 69/236 (29%)
Query: 64 GGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSD 123
G + + C+ G E +S EC D +D
Sbjct: 143 QGADTQRRFKLSDLSINSTECLHVHCR----GLE-----TSLAECTFTKRRTMGYQDFAD 193
Query: 124 GSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGH 183
+ + F+C N + I CDG DC D+ D C
Sbjct: 194 VVCYTQKAD-SPMDDFFQCVNGKYISQMKACDGINDCGDQ--SDELCC------------ 238
Query: 184 CSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPST 243
F C G+CIPS
Sbjct: 239 -----------------------------------------KACQGKGFHCKSGVCIPSQ 257
Query: 244 WVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
+ C+G+ DC G DE C + K + SC
Sbjct: 258 YQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAE----RRRIKSLLPKLSC 309
Score = 55.3 bits (133), Expect = 5e-08
Identities = 39/336 (11%), Positives = 64/336 (19%), Gaps = 82/336 (24%)
Query: 128 KSCKNRTCQASEFRCGNNRCI---PNHWQCDGEFDCSDKSDEDPEMCNGVNH-CAAVNGH 183
SC CQ + RC C+ P +G C+ P C + C
Sbjct: 23 LSCDKVFCQPWQ-RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPGTK 81
Query: 184 CSHL--CLPAPQ-----INAHSPKISCACPEGLKLLPDLLMCAE-----AGSKPCRNSTM 231
+ C + + ++ + + + +C + C +
Sbjct: 82 FLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLD-LG 140
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCK 291
F+ G + + C + C G D
Sbjct: 141 FQ--QGADTQRRFKLSDLSINSTECLHVHCRG------LETSLAECTFTKRRTMGYQDFA 192
Query: 292 DGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAV 351
D F C N I CDG
Sbjct: 193 DVVCYTQKADS-PMDDFFQCVNGK-YISQMKACDG------------------------- 225
Query: 352 AFIPPGFAMAMKIVRTAVCDKHPDCPLMQDE--------DPTKCGVDECAKDNGGCLHKC 403
DC DE C C C +
Sbjct: 226 ---------------------INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEV 264
Query: 404 VDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC 439
+ C ++ + D
Sbjct: 265 DCITGEDEVGCAGFASVAQEETEILTADMDAERRRI 300
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 89.3 bits (222), Expect = 8e-22
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 389 VDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
VDEC+ C C ++P + CEC EGY+ + +C DIDEC C+Q+C+N
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNYP 61
Query: 448 GGFKCEC 454
GG+ C C
Sbjct: 62 GGYTCYC 68
Score = 46.9 bits (112), Expect = 6e-07
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECN--EGYKLSSNRHTCIDI 430
+DEC+ C CV+ P GY C C+ +G+KL+ ++ +C +
Sbjct: 45 IDECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
Score = 38.8 bits (91), Expect = 4e-04
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 429 DIDECET-PGSC-SQICLNEKGGFKCECVAGYIKDP 462
D+DEC P C + +C N G F+CEC GY +
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNL 37
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 87.0 bits (216), Expect = 1e-20
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQI 442
P + + + C C D CEC EGY L + C DIDECE G CS +
Sbjct: 35 IPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYILD-DGFICTDIDECENGGFCSGV 92
Query: 443 CLNEKGGFKCECVAGYIKDPHHPTQC 468
C N G F+C C T C
Sbjct: 93 CHNLPGTFECICGPDSALAGQIGTDC 118
Score = 61.2 bits (149), Expect = 1e-11
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 389 VDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSN-RHTCIDIDECETPGSCSQICLNE 446
VD C C ++C L Y+C C EG+ + H C +C C +
Sbjct: 4 VDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQ---TACPADC-DP 57
Query: 447 KGGFKCECVAGYIKDPHH 464
CEC GYI D
Sbjct: 58 NTQASCECPEGYILDDGF 75
Score = 39.3 bits (92), Expect = 6e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 429 DIDECETPGSCSQICLNEK-GGFKCECVAGYIKDPHHPTQCK 469
+D C +C C + C C G+ PH P +C+
Sbjct: 3 PVDPCFR-ANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQ 43
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 78.8 bits (195), Expect = 3e-18
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETP-GSCSQICLNEK 447
+DEC + + +C++ Y CEC GY L+ N C+D DEC + C N
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGN--ECVDTDECSVGNPCGNGTCKNVI 62
Query: 448 GGFKCECVAGYIKDPHH 464
GGF+C C G+ P
Sbjct: 63 GGFECTCEEGFEPGPMM 79
Score = 48.3 bits (116), Expect = 2e-07
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 426 TCIDIDECETPGSC-SQICLNEKGGFKCECVAGYIKDPHH 464
+ +D+DEC+ P C C+N G ++CEC GYI +
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE 40
Score = 44.9 bits (107), Expect = 2e-06
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 383 DPTKCG-VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+C DEC+ N C ++ G+ C C EG++ TC
Sbjct: 37 AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC 81
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 79.3 bits (196), Expect = 2e-17
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
V+EC CV+ P Y+C+C ++L+ R C+D + G
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--NCYLDIRPRGDNG 60
Query: 449 GFKCECVAGYIKDPHH 464
C G
Sbjct: 61 DTACSNEIGVGVSKAS 76
Score = 76.2 bits (188), Expect = 2e-16
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSC 439
+ C + + +C EG++ + DIDEC+ PG C
Sbjct: 73 SKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLC 132
Query: 440 S-QICLNEKGGFKCECVAGYIKDP 462
C+N G F+C C GY +
Sbjct: 133 QGGKCINTFGSFQCRCPTGYYLNE 156
Score = 67.8 bits (166), Expect = 2e-13
Identities = 10/74 (13%), Positives = 15/74 (20%), Gaps = 3/74 (4%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
N + C G +S C TP +
Sbjct: 44 TRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY 100
Query: 449 GFKCECVAGYIKDP 462
C G+ +P
Sbjct: 101 KILCPGGEGFRPNP 114
Score = 45.0 bits (107), Expect = 1e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 389 VDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DEC + G C KC++ + C C GY L+ + C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 41.6 bits (98), Expect = 2e-04
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 429 DIDECETPGS-CSQICLNEKGGFKCECVAGYIKDP 462
D++EC P + S C+N G + C+C + +P
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 75.8 bits (187), Expect = 4e-17
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLS-SNRHTCIDIDECET-PGSC-SQICL 444
+DEC C +CV+ P + C+C+EGY+ C+DIDEC+ P C +C
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH 62
Query: 445 NEKGGFKCECVAGYIKDP 462
N +G ++CEC G+ P
Sbjct: 63 NTEGSYRCECPPGHQLSP 80
Score = 50.0 bits (120), Expect = 4e-08
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 389 VDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCI 428
+DEC +D C C + Y CEC G++LS N CI
Sbjct: 46 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 41.5 bits (98), Expect = 5e-05
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 429 DIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC 468
DIDEC P C + C+N G F+C+C GY C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 79.2 bits (194), Expect = 8e-17
Identities = 28/193 (14%), Positives = 48/193 (24%), Gaps = 18/193 (9%)
Query: 115 CDDNPDCSDGSDEK--SCKNRTCQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDEDPEM 170
D + + + + C E C + CI + CDGE DC D SDEDPE
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 91
Query: 171 CNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST 230
C+ + +P + R +
Sbjct: 92 CSLNITHVGSSYTG---LATWTSCEDLNPDHAIVTITAAHRKSFF-----PNRVWLRATL 143
Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC-HETCRSDEFTCA-----NGNCIQRIWLC 284
+ ST G + C + + +I +
Sbjct: 144 SYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDHADCKIVVP 203
Query: 285 DGDDDCKDGSDEK 297
C + ++
Sbjct: 204 SSLFVCAHFNAQR 216
Score = 65.3 bits (158), Expect = 4e-12
Identities = 35/209 (16%), Positives = 55/209 (26%), Gaps = 25/209 (11%)
Query: 70 STWVCDGQNDCPDGVDEK--KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
+ D + + ++ C + E CR EC+ CD DC DGSDE
Sbjct: 28 NKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87
Query: 128 KSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHL 187
TC + G++ W C D + + + +
Sbjct: 88 DPE---TCSLNITHVGSSYTGLATWT-----SCEDLNPD--------HAIVTITAAHRKS 131
Query: 188 CLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCD 247
P + + L G + + G +CD
Sbjct: 132 FFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKR----ELLLAPLKGQSEGYGVICD 187
Query: 248 GQNDCPDGVDEKKCHETCRSDEFTCANGN 276
D C S F CA+ N
Sbjct: 188 FNLGDD---DHADCKIVVPSSLFVCAHFN 213
Score = 64.5 bits (156), Expect = 8e-12
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 9/132 (6%)
Query: 60 FRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC---QKRICGQEEFTCRSSPGECVPLTW- 113
C G CI CDG+ DC DG DE +T ++ C L
Sbjct: 59 SECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPD 118
Query: 114 MCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
+ + + + + Q G ++ + +
Sbjct: 119 HAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKREL---LLAPL 175
Query: 174 VNHCAAVNGHCS 185
C
Sbjct: 176 KGQSEGYGVICD 187
Score = 56.1 bits (134), Expect = 5e-09
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 242 STWVCDGQNDCPDGVDEKKCH---ETCRSDEFTCAN--GNCIQRIWLCDGDDDCKDGSDE 296
+ D + + + C E C CI + CDG+ DC+DGSDE
Sbjct: 28 NKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87
Query: 297 KSCQPVKCTAGQFTCQNLTACIPDKWVCDG 326
C+ + + C+
Sbjct: 88 DPET---CSLNITHVGSSYTGLATWTSCED 114
Score = 46.0 bits (108), Expect = 1e-05
Identities = 21/190 (11%), Positives = 31/190 (16%), Gaps = 49/190 (25%)
Query: 153 QCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLL 212
+ + +K D + A ++ H C
Sbjct: 19 KLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDE---------------------- 56
Query: 213 PDLLMCAEAGSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDE------KKCHET 264
C G CI CDG+ DC DG DE
Sbjct: 57 -----------------HESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHV 99
Query: 265 CRSDEFTCANGNCIQRIW-LCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWV 323
S +C + +
Sbjct: 100 GSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDE-HDHTVSTTQ 158
Query: 324 CDGDTVEKDS 333
G
Sbjct: 159 LRGFYNFGKR 168
Score = 42.2 bits (98), Expect = 2e-04
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 266 RSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKS----CQPVKCTAGQFTCQN-LTACIPD 320
D + + D D K K+ + C + C+ + CI D
Sbjct: 12 HIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHD 71
Query: 321 KWVCDGD 327
CDG+
Sbjct: 72 LLFCDGE 78
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 73.4 bits (180), Expect = 2e-16
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 88 KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRC 147
K + + CG F+C + CVP W+CD + DC+DG+DE ++ G+
Sbjct: 3 KLEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGST 61
Query: 148 IPNHWQCDGEFDCSDK 163
+ K
Sbjct: 62 EELRVRLASHLRKLRK 77
Score = 67.6 bits (165), Expect = 3e-14
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 258 EKKCHETCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTA 316
K +TC F+C + C+ WLCDGD DC DG+DE C + +
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGSGSGSG 59
Query: 317 CIPDKWV-CDG 326
+ V
Sbjct: 60 STEELRVRLAS 70
Score = 64.1 bits (156), Expect = 5e-13
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 57 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMC 115
+ F C +C+P W+CDG DC DG DE C S G L
Sbjct: 11 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGSGSGSGSTEELRVRL 68
Query: 116 DDNPDCSD 123
+
Sbjct: 69 ASHLRKLR 76
Score = 62.6 bits (152), Expect = 1e-12
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 229 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGN--CIQRIWLCD 285
+ F C +C+P W+CDG DC DG DE C + +G+ +
Sbjct: 11 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIA-AGCLYNSTGSGSGSGSTEELRVRLA 69
Query: 286 G 286
Sbjct: 70 S 70
Score = 57.2 bits (138), Expect = 1e-10
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 129 SCKNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS 185
+ +TC S F C + C+P W CDG+ DC+D +DE N + +G S
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGS 60
Score = 41.4 bits (97), Expect = 4e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 298 SCQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
+ C F+C C+P++W+CDGD
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGD 32
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 76.0 bits (186), Expect = 8e-16
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 7/143 (4%)
Query: 74 CDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNR 133
V+E + C + E C +C+ ++CD + DC +G DEK C
Sbjct: 37 IRKAGSLRHRVEE--LEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLP 94
Query: 134 TCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPA 191
T +F + C + +S + S
Sbjct: 95 TKAGDKFIGDVCFDHCTKRR---PEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDE 151
Query: 192 PQINAHSPKISCACPEGLKLLPD 214
+++ + L + P
Sbjct: 152 SEVSMPADGEYSFADHRLTIHPP 174
Score = 69.5 bits (169), Expect = 1e-13
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 246 CDGQNDCPDGVDEKKCHETCRSDEFTCA--NGNCIQRIWLCDGDDDCKDGSDEKSCQPVK 303
V+E + +C E C + CI ++++CDG +DC++G DEK C
Sbjct: 37 IRKAGSLRHRVEELEDP-SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPT 95
Query: 304 CTAGQFTCQNLT-ACIPDKWVCDGDTVEKDSTCPNATPMN 342
+F C + E S TP+
Sbjct: 96 KAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIA 135
Score = 67.6 bits (164), Expect = 6e-13
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 60 FRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
+C G CI +VCDG NDC +G DEK C ++F C +
Sbjct: 60 HQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRR---PE 116
Query: 118 NPDCSDGSDEKSCK-----NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE-DPEMC 171
+ + S + + + DGE+ +D P
Sbjct: 117 HMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEE 176
Query: 172 NGVNHCAAVNGHCSHLC 188
+G+ +G+
Sbjct: 177 DGLGLVGEFDGYNFDRF 193
Score = 57.5 bits (138), Expect = 2e-09
Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 23/196 (11%)
Query: 115 CDDNPDCSDGSDEKSCKNRTCQAS-------EFRCG--NNRCIPNHWQCDGEFDCSDKSD 165
DD D S ++R + E +CG + +CI + CDG DC + D
Sbjct: 28 LDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGED 87
Query: 166 ED----PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEA 221
E P HC+ + S I+ L + + +E
Sbjct: 88 EKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESET 147
Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRI 281
S M + +E D + I
Sbjct: 148 DEDESEVS--------MPADGEYSFADHRLTIHPPEEDGLGLVGEFD--GYNFDRFVGHI 197
Query: 282 WLCDGDDDCKDGSDEK 297
++ C + +
Sbjct: 198 VHELSEEVCAEFIFHR 213
Score = 56.4 bits (135), Expect = 5e-09
Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 6/124 (4%)
Query: 232 FRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC-HETCRSDEFTCANGN--CI-QRIWLCD 285
+C G CI +VCDG NDC +G DEK C T D+F C +R
Sbjct: 60 HQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMT 119
Query: 286 GDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSV 345
+ + + + + DG+ D P +
Sbjct: 120 LAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGL 179
Query: 346 RIEG 349
+ G
Sbjct: 180 GLVG 183
Score = 41.8 bits (97), Expect = 3e-04
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 15/84 (17%)
Query: 245 VCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKC 304
+ + N + + R D + +E + C
Sbjct: 10 LIERTNKITTSISHVESLLDDRLDPKRI------------RKAGSLRHRVEE--LEDPSC 55
Query: 305 TAGQFTC-QNLTACIPDKWVCDGD 327
+ C + CI +VCDG
Sbjct: 56 DEHEHQCGGDDPQCISKLFVCDGH 79
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 65.0 bits (159), Expect = 8e-14
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
CQ EF C N+RCI W+CDG+ DC D SDE P +C+
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 62.7 bits (153), Expect = 5e-13
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ 300
C+ EF CAN CIQ W CDGD+DC D SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 53.8 bits (130), Expect = 6e-10
Identities = 17/41 (41%), Positives = 17/41 (41%)
Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
GS P F C CI W CDG NDC D DE
Sbjct: 1 GSPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 51.9 bits (125), Expect = 4e-09
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 57 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
F C CI W CDG NDC D DE
Sbjct: 8 PGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 50.4 bits (121), Expect = 1e-08
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 91 KRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
C EF C + C+ W CD + DC D SDE
Sbjct: 3 PPQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 36.9 bits (86), Expect = 7e-04
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGD------TVEKDSTC 335
P +C G+F C N + CI ++W CDGD + E + C
Sbjct: 3 PPQCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPALC 42
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 64.2 bits (157), Expect = 2e-13
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
+ +C +++F+C + RCIP HW CDG+ DC D SDE C
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41
Score = 61.5 bits (150), Expect = 1e-12
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ 300
+C S +F C +G CI W CDGD+DC D SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 53.5 bits (129), Expect = 1e-09
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
GS C +ST F+C G CIP W CDG NDC D DE +
Sbjct: 1 GSHSC-SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 52.3 bits (126), Expect = 2e-09
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
+ST F+C G CIP W CDG NDC D DE
Sbjct: 6 SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 49.2 bits (118), Expect = 3e-08
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
C +F C S G C+P W CD + DC D SDE
Sbjct: 5 CSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 34.6 bits (80), Expect = 0.004
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 304 CTAGQFTCQNLTACIPDKWVCDGD 327
C++ QF C + CIP+ W CDGD
Sbjct: 5 CSSTQFKCNS-GRCIPEHWTCDGD 27
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 63.1 bits (154), Expect = 3e-13
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
+ C D+F C N CI +W CD DDDC D SDE C
Sbjct: 4 PAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 61.9 bits (151), Expect = 9e-13
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 129 SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
S + C+ +F+C N RCIP+ W+CD + DC D SDED
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 53.4 bits (129), Expect = 1e-09
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 88 KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
+ C +++F CR+ C+P W CD++ DC D SDE C
Sbjct: 2 SGPAKECEKDQFQCRN--ERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 52.3 bits (126), Expect = 3e-09
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK 91
+K C F+C CIPS W CD +DC D DE C K
Sbjct: 5 AKEC-EKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 51.1 bits (123), Expect = 6e-09
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 223 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
+K C F+C CIPS W CD +DC D DE C
Sbjct: 5 AKEC-EKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 37.6 bits (88), Expect = 3e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 298 SCQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
S +C QF C+N CIP W CD D
Sbjct: 2 SGPAKECEKDQFQCRN-ERCIPSVWRCDED 30
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 68.0 bits (165), Expect = 5e-13
Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 22/188 (11%)
Query: 88 KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRC 147
K + C + F C + EC+ +CD + DC + DE C S + GN
Sbjct: 47 KIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD---VCDTSVVKAGNVFS 103
Query: 148 IPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPE 207
+ W C + D + + + L A +
Sbjct: 104 GTSTWH-----GCLAREDH--VTRITITASKRRKFFTARIWLRA--------LVESELER 148
Query: 208 GLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRS 267
+ + + + T VC + +CH +
Sbjct: 149 HGENVTSSFNAKGYYNF-ASRRLILLPTDDHDDHLAVVCS---FNRGDNERAECHRVTEA 204
Query: 268 DEFTCANG 275
CA+
Sbjct: 205 TLHQCADL 212
Score = 53.7 bits (128), Expect = 4e-08
Identities = 26/194 (13%), Positives = 45/194 (23%), Gaps = 22/194 (11%)
Query: 253 PDGVDEKKCHETCRSDEFTCA--NGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFT 310
D K C F C CI + +CDG DC + DE P C
Sbjct: 41 IDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE---DPDVCDTSVVK 97
Query: 311 CQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVC 370
N+ + C A+ F + +
Sbjct: 98 AGNVFSGTSTWHGCLAREDHVTRITITASKR-------------RKFFTARIWLRALVES 144
Query: 371 DKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430
+ + K + ++ D + +C + N
Sbjct: 145 ELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVC----SFNRGDNERAECHR 200
Query: 431 DECETPGSCSQICL 444
T C+ + +
Sbjct: 201 VTEATLHQCADLFV 214
Score = 40.3 bits (93), Expect = 0.001
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 12/128 (9%)
Query: 54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRS-------SPG 106
C S + + C + D + ++R R+ G
Sbjct: 91 CDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHG 150
Query: 107 ECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCD-----GEFDCS 161
E V ++ + + + C NR +C C+
Sbjct: 151 ENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRVTEATLHQCA 210
Query: 162 DKSDEDPE 169
D E
Sbjct: 211 DLFVTLEE 218
Score = 33.7 bits (76), Expect = 0.13
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 19/114 (16%)
Query: 32 DDKIGVDYDTFTSPTVYWRSKPCRNST-MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
D + + R G + S++ G +
Sbjct: 116 DHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYN----------- 164
Query: 91 KRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGN 144
+ L +C N G +E++ +R +A+ +C +
Sbjct: 165 ---FASRRLILLPTDDHDDHLAVVCSFN----RGDNERAECHRVTEATLHQCAD 211
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 61.8 bits (151), Expect = 8e-13
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
C + EF C +G CI W CDG DCKD SDE++C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 58.3 bits (142), Expect = 2e-11
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
C A EF C + CI + W+CDG DC DKSDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 54.5 bits (132), Expect = 4e-10
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
PC + F C G CI S+W CDG DC D DE+ C
Sbjct: 1 PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 54.5 bits (132), Expect = 4e-10
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 225 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
PC + F C G CI S+W CDG DC D DE+ C
Sbjct: 1 PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 52.6 bits (127), Expect = 2e-09
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
C EF C S GEC+ +W CD PDC D SDE++C
Sbjct: 2 CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36
Score = 34.5 bits (80), Expect = 0.005
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 304 CTAGQFTCQNLTACIPDKWVCDGD 327
C+A +F C + CI W CDG
Sbjct: 2 CSAFEFHCLS-GECIHSSWRCDGG 24
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 64.1 bits (156), Expect = 3e-12
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 389 VDECAKDNGGC---LHKCVDLPVGYMCECNEGYKLSS--------NRHTCIDIDECET-P 436
++ECA + C + Y C C+ GY+ S + +TC D+DEC +
Sbjct: 44 INECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQ 103
Query: 437 GSC--SQICLNEKGGFKCECVAGYIKDPHHPTQC 468
C S +C N G + C C G+ P
Sbjct: 104 HQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137
Score = 51.7 bits (124), Expect = 4e-08
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 379 MQDEDPTKCG-VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434
++E C VDEC+ C C + Y C C G+K CE
Sbjct: 85 FKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 60.9 bits (148), Expect = 3e-12
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
C+ DNG C C + +C C GY L+ N CI
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 37.0 bits (86), Expect = 0.001
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
C+ NG C C + C+C G L + C G PC
Sbjct: 4 CSLDNGDCDQFCHEEQN------SVVCSCARGYTLADNGKACIPTGPYPC 47
Score = 33.5 bits (77), Expect = 0.014
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 437 GSCSQICLNEKGGFKCECVAGY 458
G C Q C E+ C C GY
Sbjct: 9 GDCDQFCHEEQNSVVCSCARGY 30
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 58.8 bits (143), Expect = 1e-11
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 264 TCRSDEFTC-ANGNCIQRIWLCDGDDDCKDGSDEKSCQPV 302
C +DEF C +G CI W CDGD DC D SDEKSC+ V
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 56.1 bits (136), Expect = 9e-11
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
C +EF CR G C+PL W CD + DC D SDEKSC+
Sbjct: 4 CHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 55.7 bits (135), Expect = 2e-10
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 134 TCQASEFRC-GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
C EF+C + CIP W+CDG+ DC D SDE + C GV
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE--KSCEGV 42
Score = 49.6 bits (119), Expect = 2e-08
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 56 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 89
++ F+C G+CIP W CDG DC D DEK C
Sbjct: 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 49.6 bits (119), Expect = 2e-08
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 228 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
++ F+C G+CIP W CDG DC D DEK C
Sbjct: 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGD 327
P C +F C+ CIP +W CDGD
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGD 27
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 58.5 bits (142), Expect = 2e-11
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 261 CHETCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSCQP 301
C S +F CA+G+ CI + CDG DC+D SDE C
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 58.1 bits (141), Expect = 3e-11
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 130 CKNRTCQASEFRCGNNR-CIPNHWQCDGEFDCSDKSDE 166
C +++F+C + CI + ++CDG +DC D SDE
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 51.6 bits (124), Expect = 5e-09
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 89 CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNR 133
C +F C C+ + CD DC D SDE C R
Sbjct: 2 AMVLNCTSAQFKCADG-SSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 48.5 bits (116), Expect = 6e-08
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 56 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICG 95
S F+C G CI S + CDG DC D DE C R G
Sbjct: 8 TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
Score = 46.9 bits (112), Expect = 2e-07
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 228 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
S F+C G CI S + CDG DC D DE C
Sbjct: 8 TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 43.5 bits (103), Expect = 4e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
+ CT+ QF C + ++CI ++ CDG
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGV 30
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 58.1 bits (141), Expect = 3e-11
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
C+ DNGGC C + C C GY L + +C+ +
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 38.5 bits (90), Expect = 2e-04
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
C+ NG C C ++ C+C G L D C PC
Sbjct: 1 CSLDNGGCDQFCREERS------EVRCSCAHGYVLGDDSKSCVSTERFPC 44
Score = 33.5 bits (77), Expect = 0.012
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 437 GSCSQICLNEKGGFKCECVAGY 458
G C Q C E+ +C C GY
Sbjct: 6 GGCDQFCREERSEVRCSCAHGY 27
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 57.8 bits (140), Expect = 4e-11
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 130 CKNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDEDP 168
+ +TC S F C + C+P W CDG+ DC+D +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 41
Score = 55.5 bits (134), Expect = 2e-10
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 262 HETCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSCQ 300
+TC F+C + C+ WLCDGD DC DG+DE
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 53.5 bits (129), Expect = 1e-09
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 89 CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
+ + CG F+C + CVP W+CD + DC+DG+DE
Sbjct: 2 SEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAG 44
Score = 48.5 bits (116), Expect = 7e-08
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 57 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
+ F C +C+P W+CDG DC DG DE
Sbjct: 9 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 48.5 bits (116), Expect = 7e-08
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 229 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
+ F C +C+P W+CDG DC DG DE
Sbjct: 9 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 42.8 bits (101), Expect = 6e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
+ C F+C C+P++W+CDGD
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGD 30
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 60.4 bits (147), Expect = 5e-11
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCS- 440
+ + + G C +GY C DIDECE PG C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFPGVCKN 119
Query: 441 QICLNEKGGFKCECVAGYIKDP 462
+C+N +G FKC+C +G D
Sbjct: 120 GLCVNTRGSFKCQCPSGMTLDA 141
Score = 59.3 bits (144), Expect = 1e-10
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 25/94 (26%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE---------------- 432
+DEC + C + P ++CEC+ L + CI+ +
Sbjct: 4 IDECE-SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 433 --------CETPGSCSQICLNEKGGFKCECVAGY 458
C + + C GY
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGY 96
Score = 46.2 bits (110), Expect = 4e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI 428
+DEC G C + CV+ + C+C G L + C+
Sbjct: 107 IDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 43.5 bits (103), Expect = 3e-05
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 429 DIDECETPGSCSQICLNEKGGFKCECVAGYIKDP 462
DIDECE+ + +C N G F CEC + DP
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDP 36
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 55.8 bits (135), Expect = 1e-10
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
C E +C + +C+P++W CD DC G DE++C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 52.0 bits (125), Expect = 3e-09
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 265 CRSDEFTCANGN--CIQRIWLCDGDDDCKDGSDEKSC 299
CR E +C + CI W CDG++DC G DE++C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 49.7 bits (119), Expect = 2e-08
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 135 CQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDE 166
C+ E CG + +CIP W+CDGE DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 45.8 bits (109), Expect = 4e-07
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 60 FRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 89
C CIP +W CDG+NDC G DE+ C
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 45.8 bits (109), Expect = 4e-07
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 232 FRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 261
C CIP +W CDG+NDC G DE+ C
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 32.7 bits (75), Expect = 0.022
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 304 CTAGQFTCQN-LTACIPDKWVCDGDT 328
C + +C T CIP W CDG+
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGEN 26
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 54.0 bits (130), Expect = 6e-10
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 89 CQKRICGQEEFTCRSSP---GECVPLTWMCDDNPDCSDGSDEKSC 130
+ C +F C P GEC P W+CD +PDC DG DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 52.5 bits (126), Expect = 2e-09
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 130 CKNRTCQASEFRC-----GNNRCIPNHWQCDGEFDCSDKSDE 166
+ +C +FRC + C P W CDG DC D DE
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 52.1 bits (125), Expect = 3e-09
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 262 HETCRSDEFTCA-----NGNCIQRIWLCDGDDDCKDGSDEKSC 299
+C +F C+ +G C + WLCDG DC DG DE C
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 47.5 bits (113), Expect = 2e-07
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 60 FRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKC 89
FRC+ G C P W+CDG DC DG DE C
Sbjct: 12 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 47.5 bits (113), Expect = 2e-07
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 232 FRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKC 261
FRC+ G C P W+CDG DC DG DE C
Sbjct: 12 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 35.9 bits (83), Expect = 0.002
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 299 CQPVKCTAGQFTCQ----NLTACIPDKWVCDGD 327
+ C GQF C C P W+CDG
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGH 34
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 55.9 bits (135), Expect = 7e-10
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEK 447
++ C+D + C+C G++ + C G C+ CL E
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR-FCQREVSFLNCSLDNGGCTHYCLEEV 72
Query: 448 GGFKCECVAGY 458
G +C C GY
Sbjct: 73 GWRRCSCAPGY 83
Score = 52.4 bits (126), Expect = 1e-08
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
C+ DNGGC H C++ C C GYKL + C +
Sbjct: 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 31.6 bits (72), Expect = 0.28
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 121 CSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSD---EDPEMCNGVNHC 177
DG D+ + CG+ CI G F C +S + +C
Sbjct: 3 HVDG-DQCLVLPLEHPCASLCCGHGTCIDGI----GSFSCDCRSGWEGRFCQREVSFLNC 57
Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
+ NG C+H CL C+C G KL DLL C A PC
Sbjct: 58 SLDNGGCTHYCLEEVG------WRRCSCAPGYKLGDDLLQCHPAVKFPC 100
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 53.3 bits (128), Expect = 1e-09
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 264 TCRSDEFTCA-----NGNCIQRIWLCDGDDDCKDGSDEKSC 299
C +F C+ +G C + WLCDG DC DG DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 52.9 bits (127), Expect = 2e-09
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 94 CGQEEFTCRSSP---GECVPLTWMCDDNPDCSDGSDEKSC 130
C +F C P GEC P W+CD +PDC DG DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 51.7 bits (124), Expect = 5e-09
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 132 NRTCQASEFRCG-----NNRCIPNHWQCDGEFDCSDKSDE 166
+ C +FRC + C P W CDG DC D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 49.0 bits (117), Expect = 5e-08
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 222 GSKPCRNSTMFRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKCHET 264
GS C FRC+ G C P W+CDG DC DG DE C +
Sbjct: 1 GSSRC-PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 47.1 bits (112), Expect = 2e-07
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 60 FRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKC 89
FRC+ G C P W+CDG DC DG DE C
Sbjct: 10 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 35.5 bits (82), Expect = 0.003
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 301 PVKCTAGQFTC----QNLTACIPDKWVCDGD 327
+C GQF C C P W+CDG
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGH 32
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 57.3 bits (139), Expect = 4e-09
Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 16/214 (7%)
Query: 515 GMIFWSDISEKKIYKAPID-EGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTI 571
G ++ + I I+ +G + L + S +++T+ N I
Sbjct: 26 GKVWITQHKANMISC--INLDGKITEYPLPTPDAKVMCLTIS---SDGEVWFTENAANKI 80
Query: 572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631
+G +++ + + P + P +G +++++ N +I R DG R + +
Sbjct: 81 GRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGN-RIGRITDDGKIREYELPN 138
Query: 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFED-W 690
+P+ +TL L++ + + N I +G + P S P I+ D
Sbjct: 139 KGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKI--PTPASGPVGITKGNDDA 195
Query: 691 LYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEP 724
L++ + I + T +T P
Sbjct: 196 LWFVEIIGNKIGRIT--TSGEITEFKIPTPNARP 227
Score = 46.2 bits (110), Expect = 2e-05
Identities = 25/187 (13%), Positives = 60/187 (32%), Gaps = 11/187 (5%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVF-RTGMIFWSDISEKKIYKAPID-EGSERTV 540
+ I +I+ D ++ K + +++++ I + I G
Sbjct: 120 NRIGRITDDG-KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR--ITESGDITEF 176
Query: 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600
I + G+ +++ + N I G + + + + P ++
Sbjct: 177 KIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA- 234
Query: 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660
+++++WG KI R + I P+G+ D W + ++I
Sbjct: 235 GIDLWFTEWG-ANKIGRLTSNNIIEEYPIQIKSAEPHGICFD---GETIWFAMECDKIGK 290
Query: 661 CDYNGGN 667
N
Sbjct: 291 LTLIKDN 297
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 51.6 bits (124), Expect = 5e-09
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 130 CKNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDED 167
++ C F CGN +C+P C+G DC +++DED
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 48.9 bits (117), Expect = 4e-08
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 264 TCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSC 299
C F C N C+ ++ C+G DDC + +DE +C
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 45.1 bits (107), Expect = 8e-07
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 89 CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
Q C F C + +C+P C+ DC + +DE +C
Sbjct: 2 SQDVKCSLGYFPCGNI-TKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 44.7 bits (106), Expect = 1e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 50 RSKPCRNSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 89
+ C F C C+P C+G +DC + DE C
Sbjct: 3 QDVKCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 44.7 bits (106), Expect = 1e-06
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 225 PCRNSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
C F C C+P C+G +DC + DE C
Sbjct: 6 KCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 40.1 bits (94), Expect = 6e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
Q VKC+ G F C N+T C+P C+G
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGV 30
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 51.3 bits (123), Expect = 8e-09
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 392 CAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
C NG C C + +C C EGY+L+ N+ +C C ++ +++
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF----PCGRVSVSQTS 55
Score = 42.1 bits (99), Expect = 2e-05
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
C NG C C + K+ C+C EG +L + C A PC
Sbjct: 2 CNIKNGRCEQFCKNSAD-----NKVVCSCTEGYRLAENQKSCEPAVPFPC 46
Score = 27.8 bits (62), Expect = 2.0
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 437 GSCSQICLNEKGG-FKCECVAGY 458
G C Q C N C C GY
Sbjct: 7 GRCEQFCKNSADNKVVCSCTEGY 29
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 51.7 bits (124), Expect = 8e-09
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDEC 433
C +NGGC C D C C+EGY L ++ +C E
Sbjct: 5 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
Score = 40.9 bits (96), Expect = 5e-05
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 171 CNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
+ C NG C C K SC C EG LL D + C PC
Sbjct: 2 KDDQLICVNENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTPTVEYPC 52
Score = 31.7 bits (72), Expect = 0.10
Identities = 12/48 (25%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 427 CIDIDECETP-GSCSQICLNEKGG-FKCECVAGYIKDPHHPTQCKAAE 472
D C G C Q C + G C C GY C
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG-VSCTPTV 48
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 48.5 bits (116), Expect = 6e-08
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 392 CAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDEC 433
C +NGGC C D C C+EGY L ++ +C E
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
Score = 40.1 bits (94), Expect = 7e-05
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
C NG C C K SC C EG LL D + C PC
Sbjct: 2 CVNENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTPTVEYPC 46
Score = 27.7 bits (62), Expect = 1.6
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 437 GSCSQICLNEKGG-FKCECVAGYIKDPHHPTQCKAAE 472
G C Q C + G C C GY C
Sbjct: 7 GGCEQYCSDHTGTKRSCRCHEGYSLLADG-VSCTPTV 42
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 51.1 bits (123), Expect = 7e-08
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC--ETPGSCSQIC 443
D+C N G KC D Y C C EG+ ++ + + G C Q C
Sbjct: 42 GDQCETSPCQNQG---KCKDGLGEYTCTCLEGF---EGKNCELFTRKLCSLDNGDCDQFC 95
Query: 444 LNEKGGFKCECVAGY 458
E+ C C GY
Sbjct: 96 HEEQNSVVCSCARGY 110
Score = 39.2 bits (92), Expect = 8e-04
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE--CETPGSC 439
C+ DNG C C + +C C GY L+ N CI C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEKG 448
EC C + + ++ + D D+CET P C + G
Sbjct: 10 RECM--EETC---SYEEAREVFEDSDKTN---EFWNKYKDGDQCETSPCQNQGKCKDGLG 61
Query: 449 GFKCECVAGY 458
+ C C+ G+
Sbjct: 62 EYTCTCLEGF 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 9e-08
Identities = 73/510 (14%), Positives = 128/510 (25%), Gaps = 165/510 (32%)
Query: 241 PSTWVC-DGQNDCPDGVDEKKC--HETCRSDEFTCANGNCIQRIWL----CDGDDDC--- 290
P+ V DG G K + C S + C I WL C+ +
Sbjct: 149 PAKNVLIDGVLGS--G---KTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEM 201
Query: 291 ------------KDGSDEKSCQPVKCTAGQ------FTCQNLTAC--IPDKWVCDGDTVE 330
SD S ++ + Q + C + V +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWN 260
Query: 331 K-DSTCPN-ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCG 388
+ +C T V F+ T + H L DE
Sbjct: 261 AFNLSCKILLTTRFKQV-----TDFLSAA-------TTTHISLDHHSMTLTPDE-----V 303
Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
K L + DLP + N P S I
Sbjct: 304 KSLLLK----YLDCRPQDLPR-EVLTTN--------------------PRRLSII----- 333
Query: 448 GGFKCECVAGYIKD-PHHPTQCKAAEGHASLLFARKHDIRKISLDH---HEMTAIVNSTK 503
A I+D K + + I + SL+ E + +
Sbjct: 334 --------AESIRDGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEYRKMFDRL- 378
Query: 504 SATAIDFVFRTG--------MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD 555
VF + W D+ + V ++ +
Sbjct: 379 ------SVFPPSAHIPTILLSLIWFDVIK---------SDVMVVVNKLHKYSLVEK---Q 420
Query: 556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL----DEPRSLALNPIDGWMYWSDWGQ 611
S I + E + + +V Y + L +D + Y G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGH 479
Query: 612 N-AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGN-- 667
+ IE R + LD R +++ K+ ++ ++ + +G
Sbjct: 480 HLKNIEHPERMTLFRM------------VFLDF--R---FLEQKIRHDSTAWNASGSILN 522
Query: 668 --RRLVLYSPQ-TLSHPFS---ISTFEDWL 691
++L Y P + P ++ D+L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Score = 38.3 bits (88), Expect = 0.010
Identities = 32/275 (11%), Positives = 70/275 (25%), Gaps = 76/275 (27%)
Query: 481 RKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV 540
K+++ ++ + + V G++ GS +T
Sbjct: 127 AKYNVSRL----QPYLKLRQALLELRPAKNVLIDGVL-----------------GSGKTW 165
Query: 541 VIEEDKTIADGLAVDWIYSHIYW-TDAHKNTIE-----LANFEGTMRKVLVRSYLDEPRS 594
V + + I+W + N+ E L + S D +
Sbjct: 166 VALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSN 222
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLD--------LVQR 646
+ L Q ++ R + N ++V N + L+
Sbjct: 223 IKLR--------IHSIQA-ELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTT 272
Query: 647 RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLS--------------------HPFSIST 686
R V L+ ++ + + + L + S +P +S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 687 F----ED----WLYWSDWQQKAIYKANKFTGDNLT 713
D W W + + + + L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 31.7 bits (71), Expect = 0.99
Identities = 79/621 (12%), Positives = 157/621 (25%), Gaps = 168/621 (27%)
Query: 20 VDALYRL--------ERSV---IDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCI 68
V RL E V +++ + ++Y SP + +P + M+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI----EQR 116
Query: 69 PSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWM--CDDNPDCSDGSD 126
+ D Q V + ++ + P + V + + G
Sbjct: 117 DRLYN-DNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGS--------G-- 162
Query: 127 EKSC-KNRTCQASEFRCGNNRCIPNHW----QCDGEFDCSDKSDEDPEMCNGVNHCAAVN 181
K+ C + + +C + I W C + + EM +
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKI--FWLNLKNC-------NSPETVLEMLQKL------- 205
Query: 182 GHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTM---------- 231
+ + HS I L LL SKP N +
Sbjct: 206 --LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYENCLLVLLNVQNAKA 258
Query: 232 -----FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETC---RSDEFTCANGNCIQRIWL 283
C + D + S T + +L
Sbjct: 259 WNAFNLSCK-------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 284 CDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACI---PDKWVCDGDTVEKDSTCPNATP 340
+ T + I W D + N
Sbjct: 312 ---------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW----DNWKH----VNCDK 354
Query: 341 MNSSVRIEGAVAFIPPG--------FAMAMKIVR--TAV-----CDKHPDCP-LMQDEDP 384
+ + IE ++ + P ++ T + D ++ ++
Sbjct: 355 LTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 385 TKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRH-TCID---IDECETPGSCS 440
V++ K++ + + + + Y L H + +D I +
Sbjct: 413 KYSLVEKQPKESTISIP---SIYLELKVKLENEYAL----HRSIVDHYNIPKTFDSDDLI 465
Query: 441 QICLNEKGGFKCECVAGYIKD--PHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI 498
L+ Y HH + E LF R + LD +
Sbjct: 466 PPYLD-----------QYFYSHIGHHLKNIEHPERMT--LF------RMVFLDFRFLEQK 506
Query: 499 VNSTKSA---------TAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIEEDKT 547
+ +A T F I +D +++ A +D E ++ +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 548 IADGLAVDWIYSHIYWTDAHK 568
+ +A+ I+ +AHK
Sbjct: 567 LLR-IALMAEDEAIF-EEAHK 585
Score = 29.8 bits (66), Expect = 4.0
Identities = 48/308 (15%), Positives = 98/308 (31%), Gaps = 83/308 (26%)
Query: 458 YIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMI 517
++ + CK + D+ K L E+ I+ S D V T +
Sbjct: 29 FVDN----FDCKDVQ-----------DMPKSILSKEEIDHIIMSK------DAVSGTLRL 67
Query: 518 FWS-DISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF 576
FW+ ++++ + ++E V+ + ++ S I T+ + ++ +
Sbjct: 68 FWTLLSKQEEMVQKFVEE------VLRIN--------YKFLMSPIK-TEQRQPSMMTRMY 112
Query: 577 EGTMRKVL--VRSY--LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS--------- 623
++ + + + R + + +N I+ G+ GS
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVALDV 170
Query: 624 HRNMVIVS----DIKWPN-------GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVL 672
+ + I W N L+++Q+ LY +D S N +L +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRI 227
Query: 673 YSPQT-LSHPFSISTFEDWLYWSD--WQQKAIYKANKF---------TGD--NLTAITGV 718
+S Q L +E+ L KA N F T ++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 719 HQTHEPLN 726
TH L+
Sbjct: 285 TTTHISLD 292
Score = 29.1 bits (64), Expect = 7.9
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 3 SKCYI-GLYIGVLVVIRSVDALYRLERSVID---DKIGVDYDTFTSPTV--YWRS----- 51
S I +Y L + ++ Y L RS++D D D P + Y+ S
Sbjct: 424 STISIPSIY---LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 52 -KPCRNS---TMFR 61
K + T+FR
Sbjct: 481 LKNIEHPERMTLFR 494
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 52.1 bits (125), Expect = 1e-07
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEK 447
D+C KC D Y C C EG+ C G C Q C E+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGF--EGKNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 448 GGFKCECVAGY 458
C C GY
Sbjct: 100 NSVVCSCARGY 110
Score = 50.9 bits (122), Expect = 2e-07
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--ICLNEK 447
C+ DNG C C + +C C GY L+ N CI C + + ++
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY----PCGKQTLERRKR 137
Query: 448 GGFKCECVAGYIKDPHHPT 466
+ +G D
Sbjct: 138 SVAQATSSSGEAPDSITWK 156
Score = 39.0 bits (91), Expect = 0.002
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEKG 448
EC C ++ + ++ + D D+CET P C + G
Sbjct: 10 RECM--EETCSYEEAR---EVFEDSDKTN---EFWNKYKDGDQCETSPCQNQGKCKDGLG 61
Query: 449 GFKCECVAGY 458
+ C C+ G+
Sbjct: 62 EYTCTCLEGF 71
Score = 34.0 bits (78), Expect = 0.10
Identities = 5/75 (6%), Positives = 10/75 (13%), Gaps = 9/75 (12%)
Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICL 444
+ G + + T D + P L
Sbjct: 119 CIPTGPYPCGKQTL---ERRKRSVAQATSSSGE--APDSITWKPYDAADLDPTENPFDLL 173
Query: 445 NEKGGFKCECVAGYI 459
+
Sbjct: 174 DFNQTQPERGDNNLT 188
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 53.0 bits (127), Expect = 1e-07
Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 19/186 (10%)
Query: 530 APIDEGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTIELANFEGTMRKVLVRS 587
PI+ + + T + LA I+ T+ I +G + + +
Sbjct: 15 KPIELAPAKIITSFPVNTFLENLASA---PDGTIFVTNHEVGEIVSITPDGNQQ--IHAT 69
Query: 588 YLDEPRSLALNPIDGWMYWSDWGQNA--KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ 645
+ LA +G + + W ++ + DG+ ++ + D + NG+T
Sbjct: 70 VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SD 127
Query: 646 RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFS--------ISTFEDWLYWSDWQ 697
+ D+ I D + + L P + F ++LY S+ +
Sbjct: 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE 187
Query: 698 QKAIYK 703
+ + +
Sbjct: 188 KMLLLR 193
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 47.5 bits (113), Expect = 1e-07
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 389 VDECAKDNGG--------CLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
+DECA + C H C + GY C C GY+L +RH+C
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 42.1 bits (99), Expect = 1e-05
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 428 IDIDECETP---------GSCSQICLNEKGGFKCECVAGYI 459
+D+DEC + C +C N GG+ C C GY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 51.9 bits (125), Expect = 2e-07
Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 16/194 (8%)
Query: 515 GMIFWSDISEKKIYKAPID-EGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTI 571
G ++++ KI +D G + + L V S I++T+ N I
Sbjct: 31 GKVWFTQHKANKISS--LDQSGRIKEFEVPTPDAKVMCLIVS---SLGDIWFTENGANKI 85
Query: 572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631
+ +G + + P + +G ++++ +I + DG+ + +
Sbjct: 86 GKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLN-GDRIGKLTADGTIYEYDLPN 143
Query: 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--ED 689
+P +TL L++ + + N I G L P + P I T +
Sbjct: 144 KGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPL--PTNAAAPVGI-TSGNDG 199
Query: 690 WLYWSDWQQKAIYK 703
L++ + I +
Sbjct: 200 ALWFVEIMGNKIGR 213
Score = 47.3 bits (113), Expect = 9e-06
Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 19/208 (9%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSAT---AIDFVFRTGMIFWSDISEKKIYKAPID-EGSER 538
+ I K+S + S G I+++ ++ +I K + +G+
Sbjct: 83 NKIGKLSKKGGFTEYPLPQPDSGPYGITEG---LNGDIWFTQLNGDRIGK--LTADGTIY 137
Query: 539 TVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLA 596
+ + + + S +++T+ N+I G + + + + P +
Sbjct: 138 EYDLPNKGSYPAFITLG---SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGIT 194
Query: 597 LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656
DG +++ + N KI R G I + P+ +T +++ + N
Sbjct: 195 SGN-DGALWFVEIMGN-KIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGAN 251
Query: 657 EISSCDYNGGNRRLVLYSPQTLSHPFSI 684
+I + + L + P I
Sbjct: 252 QIGRITNDNTIQEYQL--QTENAEPHGI 277
Score = 37.3 bits (87), Expect = 0.015
Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSAT----AIDFVFRTGMIFWSDISEKKIYKAPID-EGSE 537
+ I +I+ ++ T +A G +++ +I KI + I G
Sbjct: 167 NSIGRITNTG-KLEEYPLPTNAAAPVGITSG---NDGALWFVEIMGNKIGR--ITTTGEI 220
Query: 538 RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLAL 597
I + S I++T+ N I + T+++ +++ EP +
Sbjct: 221 SEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279
Query: 598 NPIDGWMYWSDWGQNAKI 615
DG ++++ + K+
Sbjct: 280 GK-DGSVWFALKCKIGKL 296
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 49.3 bits (118), Expect = 4e-07
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK- 447
D+C + C D Y C C G+ ++ +D G C Q C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGF---EGKNCELDATCNIKNGRCKQFCKTGAD 104
Query: 448 GGFKCECVAGY 458
C C GY
Sbjct: 105 SKVLCSCTTGY 115
Score = 33.9 bits (78), Expect = 0.058
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 389 VDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDECE 434
NG C C +C C GY+L+ ++
Sbjct: 86 ATCNI-KNGRCKQFCKTGADSKVLCSCTTGYRLAPDQ---KSCKPAV 128
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 49.6 bits (117), Expect = 5e-07
Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 27/174 (15%)
Query: 271 TCANGNCIQRIWLCDGDDDCKDGSDEKSC--------QPVKCTAGQFTCQNLTACIPDKW 322
C G C+ ++C + +C P + C + +
Sbjct: 28 MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED 87
Query: 323 VCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDE 382
C D + + + + + +A C ++
Sbjct: 88 TCVLDVCQYXNCGESGECIVEYLSEIQ-----------------SAGCSCAIGXVPNPED 130
Query: 383 DPTKCGVDECAKD--NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434
+ E A C ++ Y C+C EG+ + C+
Sbjct: 131 EXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHH 184
Score = 47.7 bits (112), Expect = 3e-06
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE--CETPGS 438
+E + C + + Y C C EGY L + C G
Sbjct: 45 NECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGE 104
Query: 439 CSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469
C L+E C C G + +P C
Sbjct: 105 CIVEYLSEIQSAGCSCAIGXVPNPEDEXXCT 135
Score = 45.8 bits (107), Expect = 1e-05
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 16/181 (8%)
Query: 287 DDDCKDGSDEKSCQPVKC--TAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSS 344
+ + + + C + + F C C +T E+ + C T +
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCM----CNEGLVHLSENTCEEXNECXXETLGXAC 56
Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
+ P V C L +D ++G C+ + +
Sbjct: 57 GEFGQCIENPDPA------QVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYL 110
Query: 405 DLPVGYMCECNEGYKLSSNRHT-CIDIDECET---PGSCSQICLNEKGGFKCECVAGYIK 460
C C G + C E + +++C N +G + C+C+ G+
Sbjct: 111 SEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Query: 461 D 461
D
Sbjct: 171 D 171
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 47.2 bits (113), Expect = 2e-06
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 389 VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTC-IDIDECETPGSCSQ--IC 443
VDEC+ C H KC++ + C+C +GY C ID++EC C C
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECV-SNPCQNDATC 59
Query: 444 LNEKGGFKCECVAGY 458
L++ G F+C C+ GY
Sbjct: 60 LDQIGEFQCICMPGY 74
Score = 46.1 bits (110), Expect = 3e-06
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--IC 443
V+EC + N C+D + C C GY H ++ DEC C C
Sbjct: 45 VNECVSNPCQNDA---TCLDQIGEFQCICMPGY---EGVHCEVNTDECA-SSPCLHNGRC 97
Query: 444 LNEKGGFKCECVAGY 458
L++ F+CEC G+
Sbjct: 98 LDKINEFQCECPTGF 112
Score = 34.9 bits (81), Expect = 0.024
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 426 TCIDIDECETPGS-CSQ--ICLNEKGGFKCECVAGY 458
+ D+DEC + C C+N G F+C+C+ GY
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 36
Score = 32.2 bits (74), Expect = 0.22
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434
DECA + G +C+D + CEC G+ + +D+
Sbjct: 83 TDECASSPCLHNG---RCLDKINEFQCECPTGF---TGHLCQVDLHHIL 125
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 49.4 bits (118), Expect = 2e-06
Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 13/166 (7%)
Query: 510 FVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD---WIYSHIYWTDA 566
R G +F D+ E I+K + + + + + ++
Sbjct: 51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN-PAAIKIHKDGRLFVCYLGDFK 109
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRS--LALNPIDGWMYWSDWGQNAKIERAGM---- 620
I A G + ++ + + G Y++D+ + G+
Sbjct: 110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVS 168
Query: 621 -DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665
D +I +I NG+ L ++ L+ + N +
Sbjct: 169 PDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED 213
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 46.2 bits (110), Expect = 4e-06
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 369 VCDKHPDCPLMQDEDPTKCG------VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSS 422
C + +D + TK D+CA C D Y+C C ++
Sbjct: 21 QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR- 79
Query: 423 NRHTC-IDIDECETP----GSCSQICLNEKG-GFKCECVAGY 458
C D+ G C Q C + G C C GY
Sbjct: 80 ---NCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGY 118
Score = 40.8 bits (96), Expect = 3e-04
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 389 VDECAK---DNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECE 434
D+ +NGGC C D C C+EGY L ++ +
Sbjct: 85 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG---VSCTPTV 131
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 48.4 bits (114), Expect = 7e-06
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 225 PCRNSTMFRCTGGMCIPST--WVCDGQ-NDCPDGVDEKKC-HETCRSDEFTCA-NGNCIQ 279
PC++ +R + +C G D C + +F C G C++
Sbjct: 22 PCQD-KKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLK 80
Query: 280 RIWLCDGDDDCKDGSDEKSCQPVKC 304
R +C+GD DC DGSDE C+ V+
Sbjct: 81 RHLVCNGDQDCLDGSDEDDCEDVRA 105
Score = 41.9 bits (97), Expect = 8e-04
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 36 GVDYDTFTSPTVYWRSKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQKRIC 94
G +D + + + + F+C G C+ VC+G DC DG DE C+
Sbjct: 46 GDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRA 105
Query: 95 GQEEFTCRSSPG--ECVPLTWMCDDNPDCSDGSDEKSC--KNRTCQASEFRCGNNRCIPN 150
E+ + + L + D D + T E+R
Sbjct: 106 IDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCE 165
Query: 151 HWQ 153
Sbjct: 166 RLY 168
Score = 41.1 bits (95), Expect = 0.001
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 94 CGQEEFTCRSSPGECVPLTWMCD-DNPDCSDGSDEKSCKNRTCQASEFRCGNN-RCIPNH 151
C +++ RS +C D D + S +C + +F+C RC+ H
Sbjct: 23 CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRH 82
Query: 152 WQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLC 188
C+G+ DC D SDED
Sbjct: 83 LVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGS 119
Score = 40.4 bits (93), Expect = 0.002
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 264 TCRSDEFTCANGNCIQRI--WLCDGDD-DCKDGSDEKSCQPVKCTAGQFTCQNLTACIPD 320
C+ ++ + + +C GD D S +C F C+ C+
Sbjct: 22 PCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKR 81
Query: 321 KWVCDGD 327
VC+GD
Sbjct: 82 HLVCNGD 88
Score = 40.0 bits (92), Expect = 0.003
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 225 PCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWL 283
+ F+C G C+ VC+G DC DG DE C E R+ + C+ I
Sbjct: 63 QAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC-EDVRAIDEDCSQYEPIPGSQK 121
Query: 284 CDGDDDCKDGSDEKS 298
+ D +S
Sbjct: 122 AALGYNILTQEDAQS 136
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 45.9 bits (108), Expect = 3e-05
Identities = 16/155 (10%), Positives = 41/155 (26%), Gaps = 5/155 (3%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI---DEGSERT 539
H R I + ++ + + I + + ++ E +
Sbjct: 159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV 218
Query: 540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYLDEPRSLALN 598
+ +G I +Y+ + + +F L + +
Sbjct: 219 ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH 278
Query: 599 PIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633
P + Y Q+ I R+ D + + +
Sbjct: 279 PSGNYAYIVVVNQH-YILRSDYDWKTKRLTTPYIV 312
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 45.5 bits (108), Expect = 4e-05
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC--ETPGSCS 440
+ C C + G C D GY C C+ GY + + +EC E C
Sbjct: 4 GGSPCISQPC--LHNG---SCQDSIWGYTCTCSPGY---EGSNCELAKNECHPERTDGCQ 55
Query: 441 QICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGH 474
CL + + C C GY H +
Sbjct: 56 HFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Score = 44.7 bits (106), Expect = 7e-05
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 7/101 (6%)
Query: 64 GGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSD 123
G CI C C D + C G E C + EC P + C
Sbjct: 5 GSPCISQ--PCLHNGSCQDSIWGYTCTCSP-GYEGSNCELAKNECHPERTDGCQH-FCLP 60
Query: 124 GSDEKSC---KNRTCQASEFRCGNNRCIPNHWQCDGEFDCS 161
G + +C + +C + +
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 42.4 bits (100), Expect = 4e-04
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 6/92 (6%)
Query: 236 GGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDG-DDDCKDGS 294
G CI C C D + C + + C DG C G
Sbjct: 5 GSPCISQ--PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ 62
Query: 295 DEKSCQPVKCTAGQFTCQNLTACIPDKWVCDG 326
+ +C C G ++ C+P G
Sbjct: 63 ESYTCS---CAQGYRLGEDHKQCVPHDQCACG 91
Score = 39.7 bits (93), Expect = 0.002
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 375 DCPLMQDEDPTKCGVDEC-AKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
C + + +EC + GC H C+ Y C C +GY+L + C+ D+C
Sbjct: 29 TCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
Score = 32.4 bits (74), Expect = 0.54
Identities = 22/145 (15%), Positives = 30/145 (20%), Gaps = 48/145 (33%)
Query: 101 CRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDC 160
C S P C N C D +C C
Sbjct: 8 CISQP---------CLHNGSCQDSIWGYTC----------------------------TC 30
Query: 161 SDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
S + C H CLP + +C+C +G +L D C
Sbjct: 31 SPGYEGSNCELAKNECHPERTDGCQHFCLPGQE------SYTCSCAQGYRLGEDHKQCVP 84
Query: 221 AGSKPCRNSTMFRCTGGM-CIPSTW 244
C +
Sbjct: 85 HDQCACGV----LTSEKRAPDLQDL 105
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 42.1 bits (99), Expect = 1e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 385 TKCGVDECA-KDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
++EC + C H C + GY C C Y L + C
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 31.3 bits (71), Expect = 0.57
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 415 NEGYKLSSNRHTCIDIDECETPGS--CSQICLNEKGGFKCECVAGYI 459
E + + + DI+EC CS C N GG+ C C Y
Sbjct: 102 EERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 148
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 42.8 bits (101), Expect = 2e-04
Identities = 25/192 (13%), Positives = 65/192 (33%), Gaps = 33/192 (17%)
Query: 509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD-----GLAVDWIYSHIYW 563
DF + + +I + ID + + VI + + G D ++ +
Sbjct: 30 DFYIVAPEVEVNGKPAGEILR--IDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLF 86
Query: 564 TDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI----DGWMYWSD--------WGQ 611
+ + + +GT ++ + + R N +G ++ +
Sbjct: 87 VADMRLGLLVVQTDGTFEEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT 145
Query: 612 NAKIERAG----MDGSHRNMVIVSDIKWPNGLTL----DLVQRRLYWVDAKLNEISSCDY 663
+ E+ G + + + + ++PNG+ + D +L + ++ S D
Sbjct: 146 RSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI 205
Query: 664 NG----GNRRLV 671
G N+++
Sbjct: 206 KGPAKIENKKVW 217
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 43.1 bits (101), Expect = 3e-04
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 375 DCPLMQDEDPTKCG-VDECAKDNGGC-----LHKCVDLPVGYMCE-CNEGYK-------- 419
CP+ + T C +DECA C + +CV+ G+ C C Y+
Sbjct: 29 FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVG 88
Query: 420 ---LSSNRHTCIDIDECETP-------GSCSQICLNEKGGFKCECVAGYIKDPHHPTQC 468
+ + C + C+ C + +KCEC GY D +
Sbjct: 89 LEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGED 147
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 40.7 bits (95), Expect = 4e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 388 GVDECAKDNG---GCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
+DEC G C H C + G+ C C GY L N+ TC +
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 29.9 bits (67), Expect = 1.7
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 426 TCIDIDECETP----GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA 471
DIDEC+ +C C N GGF C C AGY+ + T C
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT-CSEQ 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 41.6 bits (98), Expect = 6e-04
Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 36/184 (19%)
Query: 513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
+ +SD+ + + + + + + + +G ++ H+ +E
Sbjct: 38 ARSAVIFSDVRQNRTWA--WSDDGQLSPEMHPSH-HQNGHCLN-KQGHLIACSHGLRRLE 93
Query: 573 LANFEGTMRKVLVRSYLDEPRS----LALNPIDGWMYWSD---------WGQNAKIERAG 619
G + + S+ + + + L P DG +++SD G ++E G
Sbjct: 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPG 152
Query: 620 M-------DGSHRNMVIVSDIKWPNGLTL--DLVQRRLYWVDAKLNEISSCDYNG----G 666
DG+ + D PNGL L D N N
Sbjct: 153 RWVFRLAPDGTLS--APIRDRVKPNGLAFLPS---GNLLVSDTGDNATHRYCLNARGETE 207
Query: 667 NRRL 670
+ +
Sbjct: 208 YQGV 211
Score = 33.1 bits (76), Expect = 0.26
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 518 FWSDISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVD 555
SD + ++ ++ + V + DGL VD
Sbjct: 186 LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD 226
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 39.7 bits (93), Expect = 7e-04
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 381 DEDPTKCGVDECAKD---NGG----CLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
++ C + NGG D +GY+C+C G+ + H +I+EC
Sbjct: 44 SDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF---NGIHCQHNINEC 100
Query: 434 ETPGSCSQ--ICLNEKGGFKCECVAGY 458
E C IC + + CEC +
Sbjct: 101 E-VEPCKNGGICTDLVANYSCECPGEF 126
Score = 32.4 bits (74), Expect = 0.23
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 25/91 (27%)
Query: 390 DECAKD---NGGCLHKCVDLPV--GYMCECNEGYK---------LSSNRHTCIDIDECET 435
D C + NGG C+ + CEC +G+ ++S+ C
Sbjct: 1 DICDPNPCENGG---ICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP 57
Query: 436 P-----GSC---SQICLNEKGGFKCECVAGY 458
G+C + G+ C+C G+
Sbjct: 58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGF 88
Score = 30.8 bits (70), Expect = 0.80
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434
++EC + NGG C DL Y CEC + R+
Sbjct: 97 INECEVEPCKNGG---ICTDLVANYSCECPGEF---MGRNCQYKGGGHH 139
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 41.4 bits (97), Expect = 8e-04
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 15/130 (11%)
Query: 44 SPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRS 103
S SK ++ + C DE+ + G+
Sbjct: 41 SAQAKALSKHQDFNSAVQLVENFC------------RNPDGDEEGVWCYVAGKPGDFGYC 88
Query: 104 SPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPN-HWQCDGEFDCSD 162
C + ++ D D +++ + T + N + C
Sbjct: 89 DLNYCEE--AVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEK 146
Query: 163 KSDEDPEMCN 172
KS ED
Sbjct: 147 KSLEDKTERE 156
Score = 36.0 bits (83), Expect = 0.042
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 15/102 (14%)
Query: 51 SKPCRN-----------STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK---RICGQ 96
CRN G C + + + DG+DE +
Sbjct: 61 ENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATS 120
Query: 97 EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQAS 138
E T + P C P S E + ++
Sbjct: 121 EYQTFFN-PATFGSGEADCGLRPLFEKKSLEDKTERELLESY 161
Score = 34.8 bits (80), Expect = 0.097
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 246 CDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC---QPV 302
C + +GV C G C +++ DG DE S +
Sbjct: 64 CRNPDGDEEGV-------WCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGA 116
Query: 303 KCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATP 340
T+ T N + C + + + + T
Sbjct: 117 TATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Score = 31.0 bits (70), Expect = 1.7
Identities = 20/157 (12%), Positives = 27/157 (17%), Gaps = 25/157 (15%)
Query: 246 CDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCT 305
C K + C D ++G C
Sbjct: 36 CLAWASAQAKALSKHQD---FNSAVQLVEN-------FCRNPDGDEEGV---WCYVAGKP 82
Query: 306 AGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIV 365
C + E S + A G
Sbjct: 83 GDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSG-------- 134
Query: 366 RTAVCDKHPDCPLMQDEDPTKCGVDECAKDN---GGC 399
A C P ED T+ + E D G
Sbjct: 135 -EADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGS 170
Score = 29.8 bits (67), Expect = 3.5
Identities = 19/159 (11%), Positives = 30/159 (18%), Gaps = 38/159 (23%)
Query: 153 QCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLL 212
C K+ + N C N + C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLV--ENFCR---------NPDGDEEGVWCY------ 77
Query: 213 PDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE----TCRSD 268
G C + + + DG+DE T S+
Sbjct: 78 ----------------VAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSE 121
Query: 269 EFTCANGNCI-QRIWLCDGDDDCKDGSDEKSCQPVKCTA 306
T N C + S E + +
Sbjct: 122 YQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLES 160
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 40.5 bits (95), Expect = 0.001
Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 32/185 (17%)
Query: 513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
+ WSD+ +++ E V+++ G AVD + + + I
Sbjct: 55 AQRTLVWSDLVGRRVLG--WREDGTVDVLLDATAFTN-GNAVDA-QQRLVHCEHGRRAIT 110
Query: 573 LANFEGTMRKVLVRSYLDEPRSLALNPI----DGWMYWSD---------WGQNAKIERAG 619
++ +G +LV Y + + + N + DG ++++D G A E A
Sbjct: 111 RSDADGQAH-LLVGRYAGKRLN-SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168
Query: 620 M-----DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE-----ISSCDYNGG--- 666
+ ++D+ PNGL ++ LY I++ + G
Sbjct: 169 HSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH 228
Query: 667 NRRLV 671
+RR
Sbjct: 229 DRRHF 233
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 40.3 bits (95), Expect = 0.001
Identities = 24/163 (14%), Positives = 63/163 (38%), Gaps = 11/163 (6%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID-EGSERTVV 541
+ + +++ + + V G ++ +D ++ K + +TV+
Sbjct: 88 RVVTLAAGSNNQTVLPFDGLNYPEGL-AVDTQGAVYVADRGNNRVVK--LAAGSKTQTVL 144
Query: 542 IEEDKTIADGLAVDWIYS--HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP 599
DG+AVD + ++Y TD N + E + VL + + P +A++
Sbjct: 145 PFTGLNDPDGVAVD---NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201
Query: 600 IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLD 642
G +Y ++ ++ + + ++ + + P + +D
Sbjct: 202 -AGTVYVTEHN-TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD 242
Score = 39.9 bits (94), Expect = 0.002
Identities = 28/136 (20%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
A+D G ++ +D + + + + +TV+ + +GLAVD +Y D
Sbjct: 73 AVD---GAGTVYVTDFNNRVVTL--AAGSNNQTVLPFDGLNYPEGLAVDTQ-GAVYVADR 126
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
N + + VL + L++P +A++ G +Y +D N ++ + + +++
Sbjct: 127 GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNN-RVVKLEAESNNQV 184
Query: 627 MVIVSDIKWPNGLTLD 642
++ +DI P G+ +D
Sbjct: 185 VLPFTDITAPWGIAVD 200
Score = 36.1 bits (84), Expect = 0.027
Identities = 18/138 (13%), Positives = 48/138 (34%), Gaps = 10/138 (7%)
Query: 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648
P +A++ G +Y + G ++ + + ++ + + P GL +D +
Sbjct: 23 RLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTV 80
Query: 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKF 707
Y D ++ G+ + L++P ++ + +Y +D + K
Sbjct: 81 YVTDFNNRVVT---LAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVV---KL 134
Query: 708 TGD-NLTAITGVHQTHEP 724
+ ++P
Sbjct: 135 AAGSKTQTVLPFTGLNDP 152
Score = 33.0 bits (76), Expect = 0.29
Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID-EGSERTV 540
+ + K++ T + + V +G ++ +D ++ K ++ E + + V
Sbjct: 129 NRVVKLAAGSKTQTVLPFTGLNDPDGV-AVDNSGNVYVTDTDNNRVVK--LEAESNNQVV 185
Query: 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600
+ D T G+AVD +Y T+ + N + T VL + L+ P ++A++
Sbjct: 186 LPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS- 243
Query: 601 DGWMYWSDWGQN 612
D +Y +D G +
Sbjct: 244 DRTVYVADRGND 255
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 40.6 bits (95), Expect = 0.002
Identities = 16/132 (12%), Positives = 30/132 (22%), Gaps = 13/132 (9%)
Query: 76 GQNDCPDGVDEKKCQKR--ICGQEEFTCRSSPGE-----CVPLTWMCDDNPDCSDGSDEK 128
G+ + +K + G +CR S T + D +
Sbjct: 256 LLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHE 315
Query: 129 SCK-----NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGH 183
+C+ CQ + C +C + S+ S G +
Sbjct: 316 ACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLK-LSSNGSPTKILHGRGGISGYTLRLC 374
Query: 184 CSHLCLPAPQIN 195
Sbjct: 375 KMDNECTTKIKP 386
Score = 36.4 bits (84), Expect = 0.041
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 244 WVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVK 303
++ G + +CR + + + D ++CQ +
Sbjct: 266 STRIKKSKALSGFSLQ----SCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKL- 320
Query: 304 CTAGQFTCQNLTACIPDKWVCDGDTVEKD-STCPNATPMN 342
CT CQ T P + C+ + N +P
Sbjct: 321 CT-NAVRCQFFTYT-PAQASCNEGKGKCYLKLSSNGSPTK 358
Score = 34.4 bits (79), Expect = 0.13
Identities = 8/130 (6%), Positives = 24/130 (18%), Gaps = 22/130 (16%)
Query: 51 SKPCRNS-TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECV 109
+ ++ C + + D + + C+
Sbjct: 271 KSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEEL-----DIVAAKSHEACQK------ 319
Query: 110 PLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCI----PNHWQCDGEFDCSDKSD 165
+C + C + + +C + +C G
Sbjct: 320 ----LCTNAVRCQFFT--YTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRL 373
Query: 166 EDPEMCNGVN 175
+
Sbjct: 374 CKMDNECTTK 383
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 39.3 bits (92), Expect = 0.003
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 388 GVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
+EC + GC H C+ Y C C +GY+L + C+ D+C
Sbjct: 1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47
Score = 31.2 bits (71), Expect = 1.1
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 11/75 (14%)
Query: 248 GQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAG 307
+N+C + C C + + + C + G D K C P A
Sbjct: 1 AKNECHPERTDG-CQHFCLPGQES----------YTCSCAQGYRLGEDHKQCVPHDQCAC 49
Query: 308 QFTCQNLTACIPDKW 322
A
Sbjct: 50 GVLTSEKRAPDLQDL 64
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 39.7 bits (92), Expect = 0.004
Identities = 45/269 (16%), Positives = 70/269 (26%), Gaps = 37/269 (13%)
Query: 62 CTGGMCIP--STWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNP 119
C+ G+ CDG + K C QE+ + G +T
Sbjct: 364 CSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC 423
Query: 120 DCSDGSDEKSCK----NRTCQASEFRC-----GNNRCIPNHWQCDGEFDCSDKSDEDPEM 170
+C + + RC G N + E + S + D + +
Sbjct: 424 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII 483
Query: 171 CNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST 230
C+G V G C LC + C C D + C + C
Sbjct: 484 CSG--LGDCVCGQC--LCHTSDVPGKLIYGQYCEC--------DTINCERYNGQVCGGPG 531
Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDD-D 289
C G C C G + C ++ C + +
Sbjct: 532 RGLCFCGKCR-----------CHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCE 580
Query: 290 CKDGSDEKSCQPVKCTAGQFTCQNLTACI 318
C G CQ +C C +C
Sbjct: 581 CHSGYQLPLCQ--ECPGCPSPCGKYISCA 607
Score = 35.1 bits (80), Expect = 0.083
Identities = 35/271 (12%), Positives = 65/271 (23%), Gaps = 47/271 (17%)
Query: 79 DCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQAS 138
C +GV + + C + + + + ++
Sbjct: 363 FCSNGVTHRNQPRGDCDG---------------VQINVPITFQVKVTATECIQEQSFVIR 407
Query: 139 EFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHS 198
+ + QC+ D +C+G G C C
Sbjct: 408 ALGFTDIVTVQVLPQCECRCRD---QSRDRSLCHGKGFL--ECGICR--CDT----GYIG 456
Query: 199 PKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 258
C + + S C S + C G C +C + +
Sbjct: 457 KNCECQTQGRSSQELEGSCRKDNNSIIC--SGLGDCVCGQC-----LCHTSDVPGKLIYG 509
Query: 259 KKCHETCRSDEFTCANGNCIQRIWLCDGDDD---CKDGSDEKSCQPVKCTAG-----QFT 310
+ C C + NG C G + +CQ + T G +
Sbjct: 510 QYC--ECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVE 567
Query: 311 CQNLTACIPDKWVCD----GDTVEKDSTCPN 337
C C + C ++ CP+
Sbjct: 568 CSGRGRCRCNVCECHSGYQLPLCQECPGCPS 598
Score = 32.8 bits (74), Expect = 0.43
Identities = 43/358 (12%), Positives = 75/358 (20%), Gaps = 59/358 (16%)
Query: 96 QEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCD 155
T R+ P + + + + ++ + + QC+
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Query: 156 GEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDL 215
D +C+G G C C C +
Sbjct: 425 CRCRDQS---RDRSLCHGKGFL--ECGICR--CDT----GYIGKNCECQTQGRSSQELEG 473
Query: 216 LMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANG 275
+ S C S + C G C +C + + + C C + NG
Sbjct: 474 SCRKDNNSIIC--SGLGDCVCGQC-----LCHTSDVPGKLIYGQYC--ECDTINCERYNG 524
Query: 276 NCIQRIWLCDGDDD---CKDGSDEKSCQPVKCTAG-----QFTCQNLTACIPDKWVCD-- 325
C G + +CQ + T G + C C + C
Sbjct: 525 QVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSG 584
Query: 326 --GDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDED 383
++ CP+ S +K P
Sbjct: 585 YQLPLCQECPGCPSPCGKYISC-------------------AECLKFEKGPFGKNCSAAC 625
Query: 384 PTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ 441
P + C C Y L + + C
Sbjct: 626 PGLQLSNNP-VKGRTCK-------ERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVA 675
Score = 30.8 bits (69), Expect = 1.7
Identities = 45/349 (12%), Positives = 68/349 (19%), Gaps = 87/349 (24%)
Query: 116 DDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVN 175
+ PD + + C N C F E +
Sbjct: 350 NALPDTLKVTYDSFCSNGVT---HRNQPRGDCDGVQINVPITFQVKV---TATECIQEQS 403
Query: 176 HCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCT 235
G + + C C C C
Sbjct: 404 FVIRALGFTDIVTVQVLPQ--------CECRCR---------DQSRDRSLCHGKGFLECG 446
Query: 236 GGMCIP-------STWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDD 288
C + +G K + S C G C+ C D
Sbjct: 447 ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCL-----CHTSD 501
Query: 289 DCKDGSDEKSCQPVKCTAGQFT---CQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSV 345
+ C+ ++ C + C C
Sbjct: 502 VPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKC---------RCH--------- 543
Query: 346 RIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVD 405
PGF C + + G C
Sbjct: 544 ----------PGFE-------------GSACQCERTTEGCLNPRRVECSGRGRC------ 574
Query: 406 LPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCEC 454
+CEC+ GY+L + C SC++ EKG F C
Sbjct: 575 --RCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNC 621
Score = 30.1 bits (67), Expect = 3.4
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 374 PDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI-DIDE 432
+C ++ C KDN + + V C C+ + + D
Sbjct: 457 KNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDT 516
Query: 433 CETPGSCSQICLNEKGGF----KCECVAGY 458
Q+C G KC C G+
Sbjct: 517 INCERYNGQVCGGPGRGLCFCGKCRCHPGF 546
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 38.8 bits (91), Expect = 0.004
Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 44/187 (23%)
Query: 513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEED-----KTIADGLAVDWIYSHIYWTDAH 567
+ + + DI KK+ + + V ++ + G
Sbjct: 23 VSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-----------TI 71
Query: 568 KNTIELANFEGTMRKVLVRSYLDEP--RSLALNPIDG--------W---MYWSDWGQNAK 614
N++ VL D+ R N DG + M +
Sbjct: 72 GTKFCALNWKEQSAVVLATVDNDKKNNR---FN--DGKVDPAGRYFAGTMA-EETAPAVL 125
Query: 615 IERAG----MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG----- 665
G + H + NGL L + Y++D+ + + DY+
Sbjct: 126 ERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185
Query: 666 GNRRLVL 672
NRR V
Sbjct: 186 SNRRSVY 192
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 38.6 bits (89), Expect = 0.005
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 387 CGVDECAKDNGGC-LH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC-ETPGSCSQIC 443
CA + C +H +C D G+ C C Y + N C+ G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVKGRI 60
Query: 444 LNEKGG----FKCECVAGYI 459
F+ + Y+
Sbjct: 61 FVGSSQVPVVFENTDLHSYV 80
Score = 33.6 bits (76), Expect = 0.20
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 429 DIDECET-PGSCSQ--ICLNEKGGFKCECVAGYIKD 461
C CS C + GF C CVA Y +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN 39
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 38.6 bits (90), Expect = 0.006
Identities = 29/204 (14%), Positives = 66/204 (32%), Gaps = 30/204 (14%)
Query: 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV----------RSYLDEPRSLALNPI 600
GL++D + + TD + + + +L+ +++ +P +A+ P
Sbjct: 95 GLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS 153
Query: 601 DGWMYWSDWGQNAKIERAGMDGSH---------RNMVIVSDIKWPNGLTLDLVQRRLYWV 651
G ++ SD N++I + G + P+ L L +L
Sbjct: 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA 213
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDW-------LYWSDWQQKAIYKA 704
D + I + + + F+IS + Y+ D + +
Sbjct: 214 DRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM 273
Query: 705 NKFTGDNLTAITGVHQTHEPLNSP 728
N +G+ + + + P
Sbjct: 274 NFSSGEIIDVFKP---VRKHFDMP 294
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 38.5 bits (89), Expect = 0.006
Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 19/227 (8%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS----ER 538
H I I ++ + + S I F+ + + I + +I+ I+ +
Sbjct: 64 HVIFAIDINTFKEVGRITGFTSPRYIHFL-SDEKAYVTQIWDYRIFI--INPKTYEITGY 120
Query: 539 TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALN 598
+ D + ++Y L T + V + +P SL ++
Sbjct: 121 IECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMD 180
Query: 599 PIDGWMYWSDWGQNAKIERAGMDGS-----HRNMVIVSDIK-----WPNGLTLDLVQRRL 648
M+ G S + K WP+ + L+ + L
Sbjct: 181 K-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL 239
Query: 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSD 695
YW++ + + R + + + +++ +Y +D
Sbjct: 240 YWINNDIWRMPVEADRVPVRPFLEFRDTKY-YGLTVNPNNGEVYVAD 285
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 38.5 bits (89), Expect = 0.009
Identities = 56/369 (15%), Positives = 89/369 (24%), Gaps = 74/369 (20%)
Query: 98 EFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNR--------CIP 149
F E +P C S K R C + + + +
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 150 NHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGL 209
+ CD C +++ + CN + G C C P + C C E
Sbjct: 429 VTFDCD--CACQAQAEPNSHRCNN-GNGTFECGVCR--CGPGWLGS------QCECSEED 477
Query: 210 KLLPDLLMCAEAGSKPCRNSTMFRCTG-GMCIPSTWVCDGQNDCPDGVDEKKCHETCRSD 268
C+ +P C+ G C+ GQ C K + C D
Sbjct: 478 YRPSQQDECSPREGQPV-------CSQRGECL------CGQCVCHSSDFGKITGKYCECD 524
Query: 269 EFTCANGNCIQRIWLCDGDDDCKDGS------------DEKSCQPVKCTAGQFTCQNLTA 316
+F+C +C G C G + + ++ C
Sbjct: 525 DFSCVRYKGE----MCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGK 580
Query: 317 CIPDKWVCD-----GDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCD 371
C VC GDT EK TCP+A
Sbjct: 581 CECGSCVCIQPGSYGDTCEKCPTCPDACTFK------KECVECKKFD--------RGALH 626
Query: 372 KHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDID 431
C D + + + +C ++ + +
Sbjct: 627 DENTCN-RYCRDEIESVKELKDTGKDAVNCTYKN-----EDDCVVRFQYYEDSSGKSILY 680
Query: 432 ECETPGSCS 440
E P C
Sbjct: 681 VVEEPECCK 689
Score = 38.1 bits (88), Expect = 0.010
Identities = 49/293 (16%), Positives = 72/293 (24%), Gaps = 43/293 (14%)
Query: 62 CTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPG------ECVPLTWMC 115
+ + T+ CD + +C E CR PG EC +
Sbjct: 421 FKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRP 480
Query: 116 DDNPDCSDGSDEKSCKNR-TCQASEFRCGNNRCIPNHW--QCDGEFDCSDKSDEDPEMCN 172
+CS + C R C CG C + + +C D S +
Sbjct: 481 SQQDECSPREGQPVCSQRGECL-----CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEM 535
Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMF 232
H G C C + +C C + C
Sbjct: 536 CSGHGQCSCGDCL--CDS----DWTGYYCNCTTRTD--------TCMSSNGLLCSGRGKC 581
Query: 233 RCTGGMCIPSTWV---CDGQNDCPDGVDEK------KCHETCRSDEFTCANGNCIQRIWL 283
C +CI C+ CPD K K + + N C I
Sbjct: 582 ECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEI-- 639
Query: 284 CDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCP 336
+ G D +C K C D V ++ C
Sbjct: 640 ESVKELKDTGKDAVNCT-YKNEDD---CVVRFQYYEDSSGKSILYVVEEPECC 688
Score = 36.6 bits (84), Expect = 0.036
Identities = 48/241 (19%), Positives = 63/241 (26%), Gaps = 35/241 (14%)
Query: 61 RCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRS------SPGECVPLTWM 114
C IP C G + + R C QE+ + V +T+
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 115 CDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
CD + C N F CG RC P E D + C+
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGT---FECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 175 NHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRC 234
+ LC C C C E C C
Sbjct: 490 EGQPVCSQRGECLC------------GQCVCHSSDFGKITGKYC-ECDDFSCVRYKGEMC 536
Query: 235 TG-GMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDG 293
+G G C G C C+ T R+D +NG C G C+ G
Sbjct: 537 SGHGQCS------CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLL------CSGRGKCECG 584
Query: 294 S 294
S
Sbjct: 585 S 585
Score = 31.6 bits (71), Expect = 1.1
Identities = 32/198 (16%), Positives = 51/198 (25%), Gaps = 27/198 (13%)
Query: 271 TCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVE 330
TC N I + C G S + C + + + T +
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 331 KDSTCPNATPMNSSVRIEGAVAFI------PPGFAMAMKIVRTAVCDKHPDCPLMQDEDP 384
D C NS G F PG+ +C +ED
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGW-----------LGSQCECS---EEDY 478
Query: 385 TKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICL 444
DEC+ G + + C C+ C + D+ ++C
Sbjct: 479 RPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYC-ECDDFSCVRYKGEMCS 537
Query: 445 NEKGGF----KCECVAGY 458
G C C + +
Sbjct: 538 G--HGQCSCGDCLCDSDW 553
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 37.1 bits (86), Expect = 0.019
Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 5/86 (5%)
Query: 58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
T +CI CDG + + G+ F R + EC +C
Sbjct: 39 TGADQGKKVCIV-YHRCDGVTNTVTPEEVINTT----GEGIFDIRENANECESYLDVCCG 93
Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCG 143
P+ CG
Sbjct: 94 LPEGGVLPTPSPTPPVVPVLKPSFCG 119
Score = 34.0 bits (78), Expect = 0.17
Identities = 18/108 (16%), Positives = 26/108 (24%), Gaps = 20/108 (18%)
Query: 109 VPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168
P C G+D+ CI +CDG + +
Sbjct: 25 KAPLGALTALPRCGTGADQGKK---------------VCIVY-HRCDGVTNTVTPEEVIN 68
Query: 169 EMCNGVNHCAAVNGHCSH---LCLPAPQINAHSPKISCACPEGLKLLP 213
G+ C +C P+ P S P L P
Sbjct: 69 TTGEGIFDIRENANECESYLDVCCGLPEGGV-LPTPSPTPPVVPVLKP 115
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 35.8 bits (83), Expect = 0.022
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 390 DECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--ICLNE 446
D+C + GC+H C + + C C + + D++ C T C C N
Sbjct: 97 DKCI-PHPGCVHGICNE---PWQCLCETNW---GGQLCDKDLNYCGTHQPCLNGGTCSNT 149
Query: 447 -KGGFKCECVAGY 458
++C C GY
Sbjct: 150 GPDKYQCSCPEGY 162
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 36.4 bits (83), Expect = 0.036
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDG 293
CT + + C C E ++F C +G CI R C+G++DC D
Sbjct: 96 CTAPLV--AFQPCIPSKLCK-------IEEADCKNKFRCDSGRCIARKLECNGENDCGDN 146
Query: 294 SDEKSCQPVKCTAGQFTCQN 313
SDE+ C K +
Sbjct: 147 SDERDCGRTKAVCTRKYNPI 166
Score = 32.5 bits (73), Expect = 0.65
Identities = 17/58 (29%), Positives = 22/58 (37%)
Query: 225 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIW 282
FRC G CI C+G+NDC D DE+ C T +Q +
Sbjct: 116 EADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPSVQLMG 173
Score = 31.0 bits (69), Expect = 1.7
Identities = 15/57 (26%), Positives = 21/57 (36%)
Query: 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECV 109
FRC G CI C+G+NDC D DE+ C + + +
Sbjct: 116 EADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPSVQLM 172
Score = 29.8 bits (66), Expect = 3.7
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 120 DCSDGSDEKSCKNRTCQASE------FRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
+ + ++ C+ E FRC + RCI +C+GE DC D SDE +
Sbjct: 97 TAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDE-RDCGRT 155
Query: 174 VNHCAAVNGHCSHLCLPAPQINAHS 198
C + L + +
Sbjct: 156 KAVCTRKYNPIPSVQLMGNGFHFLA 180
Score = 29.8 bits (66), Expect = 4.5
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 9/151 (5%)
Query: 89 CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCI 148
++ + + C + +CQ +
Sbjct: 770 EDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQ------DGRQLE 823
Query: 149 PNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEG 208
+ + + K + C C+A C CL PQ ++ C
Sbjct: 824 WGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCV--CLLPPQCFKGGNQLYCVKMGS 881
Query: 209 LKLLPDLLMCAEAGSKPCRNSTMFRCTGGMC 239
L +C E G+ C N M G C
Sbjct: 882 STSEKTLNIC-EVGTIRCANRKMEILHPGKC 911
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 36.1 bits (83), Expect = 0.037
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 202 SCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPST------WVCDGQ-NDCPD 254
C KL A+ C + F+ G C + VC G+ +C D
Sbjct: 245 PCCDATTCKLRQG----AQCAEGLCCDQCRFKGAGTECRAAKDECDMADVCTGRSAECTD 300
Query: 255 GVDEKKCHETCRSDEFTCANGNCIQRIWLC 284
++ + C+++ C NG C C
Sbjct: 301 --RFQRNGQPCKNNNGYCYNGKCPIMADQC 328
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 35.9 bits (83), Expect = 0.042
Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 12/104 (11%)
Query: 74 CDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNR 133
C+ + G K +C Q++ + C + C D G E
Sbjct: 45 CETGYELLQGHLPLKSFTAVC-QKDGSWDRPMPACSIVD--CGPPDDLPSGRVEYITGPG 101
Query: 134 TCQ---ASEFRCGNNRCI------PNHWQCDGEFDCSDKSDEDP 168
++ C + DG + S P
Sbjct: 102 VTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLP 145
Score = 34.7 bits (80), Expect = 0.092
Identities = 19/115 (16%), Positives = 29/115 (25%), Gaps = 13/115 (11%)
Query: 200 KISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK 259
S C G +LL L + C+ + C C +D P G E
Sbjct: 40 SFSIFCETGYELLQGHLPLKSFTAV-CQKDGSWDRPMPACSIVD--CGPPDDLPSGRVEY 96
Query: 260 KCHE----TCRSDEFTCAN------GNCIQRIWLCDGDDDCKDGSDEKSCQPVKC 304
+++C N + + DG G C
Sbjct: 97 ITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVC 151
Score = 32.4 bits (74), Expect = 0.49
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 252 CPDGVDEKKCHETCRSDEFTC-ANGNCIQRIWLCDGDD-----DCKDGSDEKSCQPVKCT 305
C G + + H +S C +G+ + + C D D G E P T
Sbjct: 45 CETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTT 104
Query: 306 AG---QFTCQNLTACI---PDKWVCDGDTVEKDSTCPNATPMNSSV 345
Q++C+ + K+VC+ D S + P+ V
Sbjct: 105 YKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPV 150
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 35.3 bits (81), Expect = 0.071
Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 31/199 (15%)
Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI 542
+R IS+D +++T + K + + +Y G T +
Sbjct: 152 PRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211
Query: 543 EEDKTIAD---GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL------VRSYLDEPR 593
+ T + +A+D +Y+ D++KN + + P
Sbjct: 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271
Query: 594 SLALNPIDGWMYWSDWGQNA--KIERAGM--------------DGSHRNMVIVSDIKWPN 637
+ D Y SD ++ KI G DG + PN
Sbjct: 272 LIYYFV-DSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREE----ALFAQPN 326
Query: 638 GLTLDLVQRRLYWVDAKLN 656
G+T+D Y VD
Sbjct: 327 GMTVD-EDGNFYIVDGFKG 344
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 35.4 bits (81), Expect = 0.076
Identities = 34/216 (15%), Positives = 53/216 (24%), Gaps = 19/216 (8%)
Query: 62 CTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDC 121
G+ + G C C+ + + R + G C+ N
Sbjct: 265 PVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHS 324
Query: 122 SDGSDEKSCKNRTCQASEFRC----GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
S + + T S C N F ++ DP +C C
Sbjct: 325 SSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCE-PCTC 383
Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLP---------DLLMCAEAGSKPCR- 227
+C + C C ++ DL G K C
Sbjct: 384 DPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCAC 443
Query: 228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE 263
N G C T C C V ++C +
Sbjct: 444 NPLGTIPGGNPCDSETGYC----YCKRLVTGQRCDQ 475
Score = 30.8 bits (69), Expect = 2.0
Identities = 39/230 (16%), Positives = 64/230 (27%), Gaps = 41/230 (17%)
Query: 233 RCTGGMCIPSTWVCDGQ-NDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCK 291
+ + + V G ++C + C + +
Sbjct: 328 HFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKP-----------------FYFQHPER 370
Query: 292 DGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAV 351
D D C+P CT +N C G + + V EG
Sbjct: 371 DIRDPNLCEP--CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFY 428
Query: 352 AFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYM 411
K C + T G + C + G C C L G
Sbjct: 429 DLSAED----------PYGCKSCAC----NPLGTIPGGNPCDSETGYCY--CKRLVTGQR 472
Query: 412 CE-CNEGY-KLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYI 459
C+ C + LS++ C D C+ G+ + C + G +C C+ I
Sbjct: 473 CDQCLPQHWGLSNDLDGCRPCD-CDLGGALNNSCSEDSG--QCSCLPHMI 519
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 35.3 bits (80), Expect = 0.078
Identities = 26/188 (13%), Positives = 42/188 (22%), Gaps = 13/188 (6%)
Query: 99 FTCRSSPGECVPLTWMCDDNPD-CSDGSDEKSCKNRT-CQAS-EFRCGNNRCIPNHWQCD 155
C + P +G + C + CQ C ++ C C
Sbjct: 150 DDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCH 209
Query: 156 GEFD---CSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCA-CPEGLKL 211
E C +G C C P ++ + C +
Sbjct: 210 SECLGNCSQPDDPTKCVACRNFYL----DGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK 265
Query: 212 LPDLLMCAEAGSKPCRNSTMFRCTGG-MCIPSTWVCD-GQNDCPDGVDEKKCHETCRSDE 269
+ N + C G S +C CP + +T S
Sbjct: 266 CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVT 325
Query: 270 FTCANGNC 277
C
Sbjct: 326 SAQELRGC 333
Score = 34.5 bits (78), Expect = 0.14
Identities = 36/241 (14%), Positives = 64/241 (26%), Gaps = 25/241 (10%)
Query: 116 DDNPDCSDGSDEK-SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
+ N + + S + + + + C G V
Sbjct: 120 EKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFV 179
Query: 175 NHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRC 234
C + HC +C + + + + C E C S+P + C
Sbjct: 180 ERCWTHS-HCQKVCPTICKSHGCTAEGLCCHSE----------CLGNCSQPDDPTKCVAC 228
Query: 235 T----GGMCI---PSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGD 287
G C+ P + C + + H C++ + I C
Sbjct: 229 RNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNK-C--I 285
Query: 288 DDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRI 347
+C G S + CT C C + D+V T +N S+ I
Sbjct: 286 PECPSGYTMNSSN-LLCTPCLGPCPK--VCHLLEGEKTIDSVTSAQELRGCTVINGSLII 342
Query: 348 E 348
Sbjct: 343 N 343
Score = 34.5 bits (78), Expect = 0.14
Identities = 23/142 (16%), Positives = 37/142 (26%), Gaps = 14/142 (9%)
Query: 49 WRSKPCRNSTMFRCTGGMCIPSTWVCDGQ--NDCPDGVDEKKCQKRICGQEEFTCRSSPG 106
W C+ C C C + +C D KC + C
Sbjct: 183 WTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVE--- 239
Query: 107 ECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
C P + D + + C+ S + + I N+ C +
Sbjct: 240 TCPPPYYHFQDWRCVNFSFCQDLHH--KCKNSRRQGCHQYVIHNNK-------CIPECPS 290
Query: 167 DPEMCNGVNHCAAVNGHCSHLC 188
M + C G C +C
Sbjct: 291 GYTMNSSNLLCTPCLGPCPKVC 312
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.2 bits (80), Expect = 0.082
Identities = 34/260 (13%), Positives = 63/260 (24%), Gaps = 43/260 (16%)
Query: 239 CIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDG-----DDDCKDG 293
+ V + ++ G + + T NG ++R W CK
Sbjct: 140 VEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSH 199
Query: 294 SDEKSCQPV--KCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAV 351
+C + T C+ + TCP R
Sbjct: 200 GCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCV--ETCPPPYYHFQDWR----- 252
Query: 352 AFIPPGFAMAMKIVRTAVCDKHPDCPLMQD--EDPTKCGVDECAKDNGGCLHKCVDLPVG 409
C C + ++ + G + N C+ +C P G
Sbjct: 253 ------------------CVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPEC---PSG 291
Query: 410 YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469
Y + + C + + + C + G + +
Sbjct: 292 YTM-NSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSL-----IINIR 345
Query: 470 AAEGHASLLFARKHDIRKIS 489
A+ L A I +IS
Sbjct: 346 GGNNLAAELEANLGLIEEIS 365
Score = 31.4 bits (70), Expect = 1.2
Identities = 27/215 (12%), Positives = 51/215 (23%), Gaps = 29/215 (13%)
Query: 101 CRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDC 160
C C + + + C ++ C C E
Sbjct: 155 CGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLG 214
Query: 161 SDKSDEDPEMCNGVNHCAAV--NGHCSHLCLPAPQINAHSPKISCA-CPEGLKLLPDLLM 217
+ +DP C C +G C C P ++ + C + +
Sbjct: 215 NCSQPDDPTKC---VACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQD---------L 262
Query: 218 CAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNC 277
+ + + + CIP CP G + C G C
Sbjct: 263 HHKCKNSRRQGCHQYVIHNNKCIPE---------CPSGYTMNSSNLLCT-----PCLGPC 308
Query: 278 IQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQ 312
+ L +G+ + + + G
Sbjct: 309 PKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIIN 343
Score = 29.4 bits (65), Expect = 4.2
Identities = 27/214 (12%), Positives = 54/214 (25%), Gaps = 21/214 (9%)
Query: 129 SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLC 188
S + + + + C G V C + HC +C
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHS-HCQKVC 192
Query: 189 LPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCT----GGMCI---P 241
+ + + + C E C S+P + C G C+ P
Sbjct: 193 PTICKSHGCTAEGLCCHSE----------CLGNCSQPDDPTKCVACRNFYLDGRCVETCP 242
Query: 242 STWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQP 301
+ C + + H C++ + I C +C G S
Sbjct: 243 PPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHN-NKC--IPECPSGYTMNSSNL 299
Query: 302 VKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTC 335
+ + +K + + ++ C
Sbjct: 300 LCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 34.5 bits (80), Expect = 0.093
Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 14/182 (7%)
Query: 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTM-----RKVLVRSYLDEPRSLALNPIDGWMY 605
G+AV+ + I D + + I++ + EG S L P +A+ G +
Sbjct: 34 GVAVN-AQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDII 92
Query: 606 WSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665
++ +I+ G + ++ P G+T+D + R+ V+ K+ + D NG
Sbjct: 93 VTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNG 151
Query: 666 GNRRLVLY--SPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTH 722
++ + L P + + ++ SD + + N G L I G T+
Sbjct: 152 ---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN 207
Query: 723 EP 724
P
Sbjct: 208 YP 209
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 32.1 bits (73), Expect = 0.11
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 410 YMCECNEGYKLSSNRHTCIDIDECETP-----GSCSQICLNEKGGFKCECVAGY 458
C CN G + + + C P G+C Q F C+C G+
Sbjct: 32 EYCWCNSGRA----QCHSVPVKSCSEPRCFNGGTCQQ--ALYFSDFVCQCPEGF 79
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 34.2 bits (78), Expect = 0.17
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTW 113
C + C C +T +C +G+ +C+ + G CR + EC +
Sbjct: 227 CDCGSPANCQNPCCDAATCKLKPGAECGNGLCCYQCKIKTAG---TVCRRARDEC-DVPE 282
Query: 114 MCD-DNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
C + +C D+ + CQ + C N C QC F ++ + C
Sbjct: 283 HCTGQSAEC--PRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISLFGSR--ANVAKDSCF 338
Query: 173 GVNHCAAVNGHCSH 186
N + G+C
Sbjct: 339 QENLKGSYYGYCRK 352
Score = 31.9 bits (72), Expect = 0.87
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 202 SCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPST------WVCDGQN-DCPD 254
C KL P AE G+ C + G +C + C GQ+ +CP
Sbjct: 238 PCCDAATCKLKPG----AECGNGLCCYQCKIKTAGTVCRRARDECDVPEHCTGQSAECPR 293
Query: 255 GVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
++ + C+++ C NG+C C + + SC
Sbjct: 294 DQL-QQNGKPCQNNRGYCYNGDCPIMRNQCISLFGSRANVAKDSC 337
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 34.1 bits (77), Expect = 0.18
Identities = 24/193 (12%), Positives = 61/193 (31%), Gaps = 11/193 (5%)
Query: 483 HDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV 540
I+ I L + +++ + N+ + F + ++D +E I D + +
Sbjct: 162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221
Query: 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600
+ K ADG D + N + G + Y + + +
Sbjct: 222 SVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGEL-------YFNSYEKGQVFRL 274
Query: 601 DGWMYWSDWGQNAKIERAGMDG--SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEI 658
D Y+ + + + + + ++D W + + + Y+ +
Sbjct: 275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYF 334
Query: 659 SSCDYNGGNRRLV 671
DY+ + +
Sbjct: 335 MRSDYDEIKKEFI 347
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 33.6 bits (76), Expect = 0.18
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCK 291
C+ M P W +C E C + E N C C D C
Sbjct: 32 GDCSLTMENP--WANCSSPLPCWDYINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCA 89
Query: 292 DGSDEKSCQP 301
D + C
Sbjct: 90 DHFKDNHCNQ 99
Score = 29.0 bits (64), Expect = 5.2
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 9/100 (9%)
Query: 64 GGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSD 123
G C+ C DGV ++ C C + C + C C D
Sbjct: 1 GATCLSQ--YCAD--KARDGVCDEACNSHACQWDGGDCSLTMENPW---ANCSSPLPCWD 53
Query: 124 GSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDK 163
+ + + C E N C N C + C+D
Sbjct: 54 YINNQC--DELCNTVECLFDNFECQGNSKTCKYDKYCADH 91
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 33.5 bits (76), Expect = 0.20
Identities = 17/165 (10%), Positives = 51/165 (30%), Gaps = 27/165 (16%)
Query: 551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEP----RSLALNPIDGWMYW 606
++ + + +Y D + + + + G L S P ++ ++ G +Y+
Sbjct: 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYF 142
Query: 607 SDWGQNAKIERAGMDGSHRNM---------------VIVSDIKWPNGLTLDLVQRRLYWV 651
+D + +++ ++ P G + +
Sbjct: 143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVA 202
Query: 652 DAKLNEISSCD---YNGGNRRLVLYSPQTLSHPFSISTFEDWLYW 693
+ ++I G +++ + +P +I D +W
Sbjct: 203 EFLSHQIVKYWLEGPKKGTAEVLV----KIPNPGNIKRNADGHFW 243
Score = 28.5 bits (63), Expect = 8.4
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 24/109 (22%)
Query: 485 IRKISLDHHEMTAIVNST-----KSATAIDFVFRTGMIFWSDISEK-------------- 525
+ + + T + S K A+ RTG+++++D+S
Sbjct: 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162
Query: 526 ---KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTI 571
++ K D ++ T ++ ++ + G V S + + + I
Sbjct: 163 KTGRLIK--YDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 209
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 30.6 bits (68), Expect = 0.20
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 382 EDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSN 423
E P C + C + G C + GY+C CN+GY++S +
Sbjct: 9 ETPAACSSNPCGPEAAGT---CKETNSGYICRCNQGYRISLD 47
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 33.4 bits (75), Expect = 0.29
Identities = 12/100 (12%), Positives = 19/100 (19%), Gaps = 11/100 (11%)
Query: 238 MCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEK 297
C CH C + +C+ C+ DE
Sbjct: 185 KLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV----------CRKFRDEA 234
Query: 298 SCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPN 337
+C+ C + CP
Sbjct: 235 TCKD-TCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPR 273
Score = 29.9 bits (66), Expect = 3.7
Identities = 28/214 (13%), Positives = 46/214 (21%), Gaps = 29/214 (13%)
Query: 117 DNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNH 176
+ S+ S + +CQ + C N C W E + C+G
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSC----WGAGEENCQKLTKIICAQQCSGRCR 200
Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCA-----------CPEGLKLLPDLLMCAEAGSKP 225
+ + C + C S + C CP + P
Sbjct: 201 GKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQM------- 253
Query: 226 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCD 285
N G C D C C +D + +
Sbjct: 254 DVNPEGKYSFGATC------VKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEG 307
Query: 286 GDDDCKDGSD-EKSCQPVKCTAGQFTCQNLTACI 318
+G + + A I
Sbjct: 308 PCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSI 341
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.33
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 669 RLVLYSPQTLSHP-FSI-STFE 688
L LY+ S P +I +T E
Sbjct: 28 SLKLYADD--SAPALAIKATME 47
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 33.0 bits (75), Expect = 0.34
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 590 DEPRSLALNPIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSDI------------KWP 636
D+P ++AL+P DG ++Y S G N E G V V D P
Sbjct: 345 DKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQP 403
Query: 637 NGLTLDLVQRRLYWVDAKLNEIS 659
GL + R L D ++I
Sbjct: 404 TGLDVSPDNRYLVISDFLDHQIR 426
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 32.9 bits (74), Expect = 0.36
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 225 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRI 281
R G C+ +C+G NDC D DE C + + I +
Sbjct: 65 QVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSL 121
Score = 32.2 bits (72), Expect = 0.76
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 120 DCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEM 170
+ D + C+++ RC+ C+G+ DC D+SDE
Sbjct: 52 EVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR 102
Score = 31.8 bits (71), Expect = 0.84
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 233 RCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKD 292
C C C V G C+ R LC+GD+DC D
Sbjct: 45 PCNFSDK--EVEDCVTNRPCRSQVR--------CEGFVCAQTGRCVNRRLLCNGDNDCGD 94
Query: 293 GSDEKSCQPVKCTAGQ 308
SDE +C+ +
Sbjct: 95 QSDEANCRRIYKKCQH 110
Score = 31.8 bits (71), Expect = 0.85
Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 16/102 (15%)
Query: 49 WRSKPCRNSTMF---RCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP 105
+R + F C C C E F C +
Sbjct: 30 YRYAYLLQPSQFHGEPCNFSDK--EVEDCVTNRPCRSQ----------VRCEGFVCAQT- 76
Query: 106 GECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRC 147
G CV +C+ + DC D SDE +C+ +
Sbjct: 77 GRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGI 118
Score = 31.0 bits (69), Expect = 1.6
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECV 109
R G C+ +C+G NDC D DE C++ + + +
Sbjct: 65 QVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSL 121
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 32.9 bits (74), Expect = 0.37
Identities = 33/255 (12%), Positives = 60/255 (23%), Gaps = 41/255 (16%)
Query: 218 CAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNC 277
+A S G P T C +T ++E+
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPM-----------CEKTTINNEYNYRCWTT 178
Query: 278 IQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPN 337
+ +C + ++ C +C N TAC+ + CP
Sbjct: 179 NRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCV--PACPP 236
Query: 338 ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNG 397
T R C C + + +G
Sbjct: 237 NTYRFEGWR-----------------------CVDRDFCANIL--SAESSDSEGFVIHDG 271
Query: 398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAG 457
C+ +C P G++ ++ C + E E + + C G
Sbjct: 272 ECMQEC---PSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKG 328
Query: 458 YIKDPHHPTQCKAAE 472
+ A+E
Sbjct: 329 NLLINIRRGNNIASE 343
Score = 31.7 bits (71), Expect = 1.0
Identities = 35/247 (14%), Positives = 53/247 (21%), Gaps = 40/247 (16%)
Query: 78 NDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQA 137
+ D V +E E P+ N + + + + C +
Sbjct: 128 SLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPS 187
Query: 138 SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAA-----VNGHCSHLCLPAP 192
CG C N+ C +C + C A G C C P
Sbjct: 188 ---TCGKRACTENNECCH--PECLGSCSA----PDNDTACVACRHYYYAGVCVPACPPNT 238
Query: 193 QINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDC 252
+ CA S +S F G C+ C
Sbjct: 239 YRFEGWRCVDRD------------FCANILSAESSDSEGFVIHDGECMQE---------C 277
Query: 253 PDG-----VDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAG 307
P G C C + I + + K + G
Sbjct: 278 PSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRG 337
Query: 308 QFTCQNL 314
L
Sbjct: 338 NNIASEL 344
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 32.7 bits (74), Expect = 0.42
Identities = 40/263 (15%), Positives = 72/263 (27%), Gaps = 53/263 (20%)
Query: 99 FTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEF 158
G C C + + + + S + +CI N
Sbjct: 156 LGMNHDRGFCTCGFNKCVMSTRRTKPAYQFSSCSVREHQRYLLRDRPQCILNKPLSTDIV 215
Query: 159 D---CSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDL 215
C + E E C+ C + S C KL +
Sbjct: 216 SPPICGNYFVEVGEECD----CGSPADCQSACC----------------NATTCKLQHE- 254
Query: 216 LMCAEAGSKPCRNSTMFRCTGGMCIPST------WVCDGQN-DCPDGVDEKKCHETCRSD 268
A+ S+ C F+ C + +C GQ+ +CP V ++ C+++
Sbjct: 255 ---AQCDSEECCEKCKFKGARAECRAAKDDCDLPELCTGQSAECPTDVF-QRNGLPCQNN 310
Query: 269 EFTCANGNCI------QRIWLCD---GDDDCKDGSDE---------KSCQPVKCTAGQFT 310
+ C NG C + D C + + + + C A
Sbjct: 311 QGYCYNGKCPIMTNQCIALRGPGVKVSRDSCFTLNQRTRGCGLCRMEYGRKIPCAAKDVK 370
Query: 311 CQNLTACIPDKWVCDGDTVEKDS 333
C L + +C+ +D
Sbjct: 371 CGRLFCKRRNSMICNCSISPRDP 393
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 32.7 bits (73), Expect = 0.48
Identities = 38/382 (9%), Positives = 72/382 (18%), Gaps = 14/382 (3%)
Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVP 110
P + + C C G+ P + + +C ++ P
Sbjct: 146 PWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDC 205
Query: 111 LTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEM 170
C +D +C N + + N E + + K
Sbjct: 206 CHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAFC 265
Query: 171 CNGVNHCAAV-NGHCSHLCLPAPQINAHSPKISCACPEGL----KLLPDLLMCAEAGSKP 225
H V + C C + + C + A +
Sbjct: 266 VKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVD 325
Query: 226 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCD 285
N F + ++ G + P E E +
Sbjct: 326 SSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPP 385
Query: 286 GDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSV 345
D S+ + +G I + +
Sbjct: 386 NMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYY 445
Query: 346 RIE---------GAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDN 396
I VC+ P +C
Sbjct: 446 HTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRG 505
Query: 397 GGCLHKCVDLPVGYMCECNEGY 418
C+ C + N+
Sbjct: 506 RICIESCNLYDGEFREFENDSI 527
Score = 30.4 bits (67), Expect = 2.7
Identities = 19/270 (7%), Positives = 53/270 (19%), Gaps = 1/270 (0%)
Query: 67 CIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSS-PGECVPLTWMCDDNPDCSDGS 125
C S + C K G + S+ + + + +
Sbjct: 284 CPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLI 343
Query: 126 DEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS 185
+ + + + + + +S V G
Sbjct: 344 FLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRV 403
Query: 186 HLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWV 245
+ I S ++ + + + ++ + +
Sbjct: 404 LYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVI 463
Query: 246 CDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCT 305
D + + C+ C SD + C + + + +
Sbjct: 464 RDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFE 523
Query: 306 AGQFTCQNLTACIPDKWVCDGDTVEKDSTC 335
+ C + C
Sbjct: 524 NDSICVECDPQCEKMEDGLLTCHGPGPDNC 553
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 28.6 bits (65), Expect = 0.58
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 428 IDIDECETPGSCSQICLN------EKGGFKCECVAGY 458
+D D+CE S CLN + ++C C G+
Sbjct: 1 VDGDQCE-----SNPCLNGGSCKDDINSYECWCPFGF 32
Score = 27.8 bits (63), Expect = 0.92
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGY 418
D+C + NGG C D Y C C G+
Sbjct: 3 GDQCESNPCLNGG---SCKDDINSYECWCPFGF 32
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 31.5 bits (72), Expect = 0.84
Identities = 28/201 (13%), Positives = 57/201 (28%), Gaps = 59/201 (29%)
Query: 513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT----IADGLAVDWIYSHIYWTDAHK 568
+G +W +I E+++++ + G + + + I+D + ++ D
Sbjct: 59 ASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTAT 118
Query: 569 NTIE-LANFE---------------------GTMRKVLVRSYLDEPRSLALNPIDGWMYW 606
+ A E GTM + G +Y
Sbjct: 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR-------------KAETGAGSIYH 165
Query: 607 SDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-- 664
G+ K+ +DI PN + Y+VD K+N + +
Sbjct: 166 VAKGKVTKL--------------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR 211
Query: 665 ----GGNRRLVLYSPQTLSHP 681
G + + S
Sbjct: 212 TGLPTGKAEVFIDSTGIKGGM 232
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 31.4 bits (70), Expect = 1.1
Identities = 17/161 (10%), Positives = 31/161 (19%), Gaps = 22/161 (13%)
Query: 45 PTVYWRSKPCR--NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCR 102
+ + S+ C + R + G W + +C +
Sbjct: 157 TQLEFMSQQCARTDGQPLRSSPGGASFYHWGA-----AVPHSQGDALCRHMCRAIGESFI 211
Query: 103 SSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSD 162
G+ D C + C + CDG D
Sbjct: 212 MKRGDSFL------DGTRCMPSGPREDGTLSLCV---------LGSCRTFGCDGRMDSQQ 256
Query: 163 KSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISC 203
D + C+ G +
Sbjct: 257 VWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTPNLT 297
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 31.2 bits (70), Expect = 1.4
Identities = 9/68 (13%), Positives = 13/68 (19%), Gaps = 3/68 (4%)
Query: 121 CSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAV 180
C+ + C G+ K +G
Sbjct: 258 CAVVRQGQMVCLTKKL---PAVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGS 314
Query: 181 NGHCSHLC 188
G CS C
Sbjct: 315 WGQCSRSC 322
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.4 bits (70), Expect = 1.5
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 24/135 (17%)
Query: 398 GCLH------KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--ICLNEKGG 449
G + + ++ S C +E E G C +C
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGE-GGVCLNGGVCSVVDDQ 210
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509
C+C + + +D+ + + S+ I
Sbjct: 211 AVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQS-----------SSDEIT 259
Query: 510 FVFRT----GMIFWS 520
F+T G++ +
Sbjct: 260 LSFKTLQRNGLMLHT 274
Score = 29.0 bits (64), Expect = 7.3
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 28/142 (19%)
Query: 427 CIDIDECETPGSCSQ--ICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHD 484
C SCS +CL + GF C+C P
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT-----------YIF 1061
Query: 485 IRKISLDHHEMTAIVNSTKSATAIDFVFRT----GMIFWSDISEKKIY-----------K 529
+ ++ + A + F T ++ D S
Sbjct: 1062 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIG 1121
Query: 530 APIDEGSERTVVIEEDKTIADG 551
+ G++ + E + I DG
Sbjct: 1122 VKFNVGTDDIAIEESNAIINDG 1143
Score = 28.7 bits (63), Expect = 8.6
Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 30/143 (20%)
Query: 398 GCL------HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC--SQICLNEKGG 449
GC+ + D+ + G K S + + C + +C +
Sbjct: 584 GCIRDLFIDGQSKDIRQMAEVQSTAGVKPS----CSRETAKPCLSNPCKNNGMCRDGWNR 639
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509
+ C+C + S+ ++ V A +
Sbjct: 640 YVCDCSGTGYLGRSCEREATVLSYDGSM--------------FMKIQLPVVMHTEAEDVS 685
Query: 510 FVFRT----GMIFWSDISEKKIY 528
FR+ G++ + +
Sbjct: 686 LRFRSQRAYGILMATTSRDSADT 708
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 30.7 bits (69), Expect = 1.6
Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 141 RCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCL-PAPQINAHSP 199
C CI + F S C+ + + L + SP
Sbjct: 161 ICIPGPCIMLKKRTAPAFQFSS--------CSIREYREYLLRDRPQCILNKPLSTDIVSP 212
Query: 200 KISCACPEGLKLLPDLLMCAEAGSKPCRNST-MFRCTGGMCIPST------WVCDGQ-ND 251
I + D S C +T F+ C + +C GQ +
Sbjct: 213 PICGNYFVEVGEECDCGSPQACQSACCNAATCQFKGAETECRVAKDDCDLPELCTGQSAE 272
Query: 252 CPDGVDEKKCHETCRSDEFTCANGNCIQRIWLC 284
CP ++ C++++ C NG C C
Sbjct: 273 CPTDSL-QRNGHPCQNNQSYCYNGTCPTLTNQC 304
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.4 bits (68), Expect = 2.0
Identities = 14/69 (20%), Positives = 16/69 (23%), Gaps = 8/69 (11%)
Query: 396 NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG-----F 450
GC LP Y C C G+ C C G
Sbjct: 249 QEGCKSYVFCLPDPYGCSCATGW---KGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ 305
Query: 451 KCECVAGYI 459
C C G+
Sbjct: 306 GCLCSPGWQ 314
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 30.3 bits (68), Expect = 2.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
E + C H C + GY C C GY L ++ TC
Sbjct: 125 KEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
Score = 29.5 bits (66), Expect = 3.5
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 424 RHTCIDIDECETP----GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGH 474
+ +D+DEC+ SC C N GG+ C C GYI + T +
Sbjct: 115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDN 169
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 30.4 bits (68), Expect = 2.4
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 219 AEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQ-------NDCPDGVDEKKCHETCRSDEFT 271
++ G C F +G C S CD ++CP V K + C +
Sbjct: 249 SQCGHGDCCEQCKFSKSGTECRASMSECDPAEHCTGQSSECPADV-FHKNGQPCLDNYGY 307
Query: 272 CANGNCIQRIWLCDGDDDCKDGSDEKSC 299
C NGNC C E SC
Sbjct: 308 CYNGNCPIMYHQCYDLFGADVYEAEDSC 335
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 30.0 bits (68), Expect = 2.7
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 621 DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTL-S 679
+G+ +V + + +R LY + + + L + L
Sbjct: 25 EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84
Query: 680 HPFSISTFED--WLY 692
IST +++
Sbjct: 85 SLTHISTDHQGQFVF 99
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 30.4 bits (67), Expect = 2.8
Identities = 50/379 (13%), Positives = 83/379 (21%), Gaps = 25/379 (6%)
Query: 77 QNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQ 136
CP + K + T G CV C N S ++C +
Sbjct: 237 VPRCPQPLVYNKLTFQ-LEPNPHTKYQYGGVCVA---SCPHNFVVDQTSCVRACPPDKME 292
Query: 137 ASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINA 196
+ E S + + N + L
Sbjct: 293 VDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGD 352
Query: 197 HSPKISCACPEGLKLLPDLLMCAE--AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPD 254
KI PE L + + + F + +
Sbjct: 353 PWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLL 412
Query: 255 GVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNL 314
+ + G + P + +
Sbjct: 413 IMKNLNVTSLGFRSLKEISAGRIYIS-ANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPR 471
Query: 315 TACIPDKWVCDGDTVEKDSTCPNAT---PMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCD 371
C+ + VCD P + R V + A C
Sbjct: 472 RDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECF 531
Query: 372 K-HPDCPLMQDED----PTKCGVDECA--KDNGGCLHKCVDLPVGYMCECNEGYKLSSNR 424
HP+C M+ +CA +D C+ C P G + YK +
Sbjct: 532 SCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSC---PHGVLGAKGPIYKYPDVQ 588
Query: 425 HTCIDIDECETPGSCSQIC 443
+ C C +C+Q C
Sbjct: 589 NECR---PCH--ENCTQGC 602
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 30.0 bits (67), Expect = 2.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
E + C H C + GY C C GY L ++ TC
Sbjct: 124 CKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 29.8 bits (66), Expect = 3.3
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 412 CECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
C+ G KLS + TC DI C + G
Sbjct: 6 CDGRGGLKLSQDMDTCEDILPCVPFSVAKSVKSLYLG 42
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.9 bits (66), Expect = 3.6
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 8/79 (10%)
Query: 71 TWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDC-------SD 123
C + +C C ++ G+C C ++
Sbjct: 75 KHQCQSFCEPLFPKKSYECLTS-CEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNE 133
Query: 124 GSDEKSCKNRTCQASEFRC 142
S K C + C +
Sbjct: 134 CSGVKKCCSNGCGHTCQVP 152
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 29.4 bits (65), Expect = 5.0
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 14/154 (9%)
Query: 565 DAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA--KIERAGMDG 622
+ I+ + V + L+ + W+Y S + +I+ A +
Sbjct: 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN 229
Query: 623 S-------HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP 675
+ S+ +G+++D +Y D + I +L++
Sbjct: 230 LQLTDAELGSKIERYSEKPICDGISID-KDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288
Query: 676 QTLSHPFSISTFED-WLYW--SDWQQKAIYKANK 706
LS S + D +LY+ + A A +
Sbjct: 289 -KLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGE 321
>1a73_A Intron 3 (I-PPO) encoded endonuclease; complex (homing
endonuclease/DNA), zinc, DNA binding, protein folding,
hydrolase/DNA complex; HET: DNA; 1.80A {Physarum
polycephalum} SCOP: d.4.1.3 PDB: 1a74_A* 1ipp_A* 1evw_A*
2o6m_A 1evx_A 1cz0_A 1cyq_A
Length = 163
Score = 28.2 bits (62), Expect = 6.0
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 134 TCQASEFRCGNNRCI-PNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAP 192
TC AS C N RC P H E + G N C NG C H +
Sbjct: 93 TCTASH-LCHNTRCHNPLHLCW-----------ESLDDNKGRNWCPGPNGGCVHAVVCLR 140
Query: 193 QINAHSPKISCACPE 207
Q + P + A P+
Sbjct: 141 QGPLYGPGATVAGPQ 155
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 28.8 bits (64), Expect = 7.0
Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 30/143 (20%)
Query: 427 CIDIDECETPGSCSQ--ICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHD 484
C SCS +CL + GF C+C C
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMT----SFSGPLCNDPGTTYIFS------ 230
Query: 485 IRKISLDHHEMTAIVNSTKSATAIDFVFRT----GMIFWSD------------ISEKKIY 528
+ ++ + A + F T ++ D I + KI
Sbjct: 231 -KGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKI- 288
Query: 529 KAPIDEGSERTVVIEEDKTIADG 551
+ G++ + E + I DG
Sbjct: 289 GVKFNVGTDDIAIEESNAIINDG 311
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.3 bits (62), Expect = 7.7
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFR 141
RI E + + +C + + G D + + + + R
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSR 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.459
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,794,663
Number of extensions: 739555
Number of successful extensions: 3730
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2452
Number of HSP's successfully gapped: 710
Length of query: 734
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 633
Effective length of database: 3,881,772
Effective search space: 2457161676
Effective search space used: 2457161676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)