BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8877
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 47 PPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSV 106
P RD T+ IDG +Y++GG G S G D+ + K +W++ +
Sbjct: 52 PGGPRDQATSAFIDGNLYVFGGIGKNS----EGLTQVFNDVHKYNPKTNSWVKLXS--HA 105
Query: 107 PVGRRSHSAFVYGDGLYIFGGYN 129
P G H FV+ Y+ GG N
Sbjct: 106 PXGXAGHVTFVHNGKAYVTGGVN 128
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 76 YHSGSEVYCPDLVYLDLKYF--TWIRPNTTG---------SVPVGRRSHSAFVYGDG-LY 123
+ SG+ D VY+ L W + +T + P G R + + DG LY
Sbjct: 10 FKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLY 69
Query: 124 IFGGYNGLVE---EHYNDIYRYCTRRQEWARVIPH 155
+FGG E + +ND+++Y + W ++ H
Sbjct: 70 VFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSH 104
>pdb|3QNK|A Chain A, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|B Chain B, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|C Chain C, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|D Chain D, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
Length = 517
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 79 GSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYND 138
SE C D + DLK T P + GS GR + A Y L ++ Y D
Sbjct: 147 SSEKECYDFILEDLKKATEXLPASYGSREKGRATKGA------AYALKSRVELYDKRYED 200
Query: 139 IYRYCTRRQEWARVIPHGAPPTKRR 163
+ + C + + G P K R
Sbjct: 201 VIKSCAEVYKLGYELVDGTTPEKYR 225
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 51 RDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGR 110
R A + DGR+ + G D S +EVY D K+ + + P R
Sbjct: 187 RSLFGATVHDGRIIVAAGVTDTG--LTSSAEVYS----ITDNKWAPF------EAFPQER 234
Query: 111 RSHSAFVYGDGLYIFGGYNGLVEE-------HYNDIYRYCTRRQEWARVI 153
S S LY GG+ L E NDI+RY ++W V+
Sbjct: 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 13 RVNHAAVLNDNKIFTFGGYC-SGEDYVKR-RPMDGEPPSYRDFHTAN------IIDGRMY 64
R +H A I+T GGY Y++ P DG D ++ G +Y
Sbjct: 16 RGSHMAPKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLY 75
Query: 65 IWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYI 124
GGR + S + C + W P SVP R V +Y
Sbjct: 76 AVGGRNNSPDGNTDSSALDC-----YNPMTNQW-SPCAPMSVP--RNRIGVGVIDGHIYA 127
Query: 125 FGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154
GG +G + H+N + RY R EW V P
Sbjct: 128 VGGSHGCI--HHNSVERYEPERDEWHLVAP 155
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 58 IIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFV 117
++ G +Y GGR + S + C + W P SVP R V
Sbjct: 68 VVGGLLYAVGGRNNSPDGNTDSSALDC-----YNPXTNQW-SPCAPXSVP--RNRIGVGV 119
Query: 118 YGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154
+Y GG +G + H+N + RY R EW V P
Sbjct: 120 IDGHIYAVGGSHGCI--HHNSVERYEPERDEWHLVAP 154
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 31/181 (17%)
Query: 13 RVNHAAVLNDNKIFTFGGYCSG-------EDYVKRRPMDGEPPSY---RDFHTANIIDGR 62
R + AA + KI+T GG G E Y R PS R H +G
Sbjct: 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGL 151
Query: 63 MYIWGGR--GDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPV--GRRSHSAFVY 118
+Y+ GG + S + EVY D TW T P+ R++H
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVY-------DPATETW-----TELCPMIEARKNHGLVFV 199
Query: 119 GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFG 178
D ++ GG NGL +++ Y + EW V P P K C G + +
Sbjct: 200 KDKIFAVGGQNGL--GGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLA 254
Query: 179 G 179
G
Sbjct: 255 G 255
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 51 RDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGR 110
R A + +Y+ GG + S H+ E Y P++ W + G + R
Sbjct: 103 RGLAGATTLGDMIYVSGGF--DGSRRHTSMERYDPNI-------DQW---SMLGDMQTAR 150
Query: 111 RSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIK 170
V +Y GGY+GL N + +Y W V P TKR +
Sbjct: 151 EGAGLVVASGVIYCLGGYDGL--NILNSVEKYDPHTGHWTNVTPMA---TKRSGAGVALL 205
Query: 171 GDTLIMFGG 179
D + + GG
Sbjct: 206 NDHIYVVGG 214
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 62 RMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDG 121
R+Y+ GG S L S V C D + + + P + V R A GD
Sbjct: 64 RIYVIGGYDGRSRL----SSVECLDYTADEDGVWYSVAP-----MNVRRGLAGATTLGDM 114
Query: 122 LYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGG 179
+Y+ GG++G + + RY +W+ + G T R ++ + GG
Sbjct: 115 IYVSGGFDG--SRRHTSMERYDPNIDQWSML---GDMQTAREGAGLVVASGVIYCLGG 167
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 18/138 (13%)
Query: 25 IFTFGGYC-SGEDYVKR-RPMDGEPPSYRDFHTAN------IIDGRMYIWGGRGDESSLY 76
I+T GGY Y++ P DG D ++ G +Y GGR +
Sbjct: 27 IYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86
Query: 77 HSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHY 136
S + C + W P SVP R V +Y GG +G + H+
Sbjct: 87 TDSSALDC-----YNPMTNQW-SPCAPMSVP--RNRIGVGVIDGHIYAVGGSHGCI--HH 136
Query: 137 NDIYRYCTRRQEWARVIP 154
N + RY R EW V P
Sbjct: 137 NSVERYEPERDEWHLVAP 154
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 49 SYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNT 102
S + H +DG++Y+ G R + S + H + D +K W+ P
Sbjct: 137 SVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEV 190
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 49 SYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNT 102
S + H +DG++Y+ G R + S + H + D +K W+ P
Sbjct: 153 SVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEV 206
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 58 IIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFV 117
++ G +Y GGR + S + C + W P + SVP R V
Sbjct: 61 VVGGLLYAVGGRNNSPDGNTDSSALDC-----YNPMTNQW-SPCASMSVP--RNRIGVGV 112
Query: 118 YGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154
+Y GG +G + H++ + RY R EW V P
Sbjct: 113 IDGHIYAVGGSHGCI--HHSSVERYEPERDEWHLVAP 147
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 58 IIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFV 117
++ G +Y GGR + S + C + W P + SVP R V
Sbjct: 62 VVGGLLYAVGGRNNSPDGNTDSSALDC-----YNPMTNQW-SPCASMSVP--RNRIGVGV 113
Query: 118 YGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154
+Y GG +G + H++ + RY R EW V P
Sbjct: 114 IDGHIYAVGGSHGCI--HHSSVERYEPERDEWHLVAP 148
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of
Human Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 26.2 bits (56), Expect = 9.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 38 VKRRPMDGEPPSYRDFHTANIIDG 61
VK RP+ G+ + D+ AN +DG
Sbjct: 66 VKLRPLPGKDSKHSDYINANYVDG 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.143 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,908,855
Number of Sequences: 62578
Number of extensions: 325646
Number of successful extensions: 534
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 24
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)