Query psy8877
Match_columns 180
No_of_seqs 133 out of 1441
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 21:38:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693|consensus 100.0 6.7E-34 1.5E-38 195.3 11.8 172 1-180 2-200 (392)
2 KOG4441|consensus 100.0 9.5E-33 2.1E-37 214.9 18.7 163 2-180 312-484 (571)
3 KOG4693|consensus 100.0 3E-33 6.4E-38 192.2 13.5 180 1-180 115-311 (392)
4 KOG4441|consensus 100.0 3.1E-32 6.7E-37 212.0 18.9 164 1-180 359-531 (571)
5 PHA02713 hypothetical protein; 100.0 3.4E-32 7.4E-37 212.2 18.5 173 1-180 330-521 (557)
6 PHA02713 hypothetical protein; 100.0 7.4E-32 1.6E-36 210.3 19.6 165 1-180 282-472 (557)
7 PLN02153 epithiospecifier prot 100.0 5.9E-31 1.3E-35 195.3 21.9 177 1-180 60-260 (341)
8 PLN02153 epithiospecifier prot 100.0 6.5E-31 1.4E-35 195.1 21.1 170 2-180 8-202 (341)
9 PLN02193 nitrile-specifier pro 100.0 1.3E-30 2.8E-35 200.2 21.7 168 1-180 203-386 (470)
10 TIGR03548 mutarot_permut cycli 100.0 8.3E-31 1.8E-35 193.2 19.5 164 2-180 52-232 (323)
11 PLN02193 nitrile-specifier pro 100.0 2E-30 4.4E-35 199.1 21.0 168 2-180 152-337 (470)
12 PHA03098 kelch-like protein; P 100.0 2.3E-30 4.9E-35 202.4 19.6 166 1-180 321-496 (534)
13 KOG0379|consensus 100.0 1.2E-29 2.7E-34 194.6 19.0 170 2-180 99-284 (482)
14 TIGR03548 mutarot_permut cycli 100.0 3E-29 6.6E-34 184.9 19.7 167 2-180 103-312 (323)
15 PHA02790 Kelch-like protein; P 100.0 2.2E-29 4.7E-34 193.9 19.0 150 1-180 297-455 (480)
16 KOG0379|consensus 100.0 1.6E-29 3.4E-34 194.0 18.2 163 9-180 57-233 (482)
17 KOG1230|consensus 100.0 5.4E-29 1.2E-33 179.8 16.7 175 1-180 108-316 (521)
18 PHA03098 kelch-like protein; P 100.0 3.1E-28 6.7E-33 190.4 18.8 162 2-180 275-446 (534)
19 TIGR03547 muta_rot_YjhT mutatr 100.0 7.1E-28 1.5E-32 179.3 18.9 176 1-180 41-266 (346)
20 TIGR03547 muta_rot_YjhT mutatr 100.0 9.9E-28 2.1E-32 178.5 18.6 164 6-180 1-209 (346)
21 PRK14131 N-acetylneuraminic ac 100.0 8.2E-27 1.8E-31 175.1 18.5 167 2-179 18-229 (376)
22 PRK14131 N-acetylneuraminic ac 99.9 3.9E-26 8.5E-31 171.4 18.0 175 2-180 63-288 (376)
23 KOG1230|consensus 99.9 1.7E-26 3.7E-31 167.0 15.2 169 8-180 62-251 (521)
24 KOG4152|consensus 99.9 2E-26 4.4E-31 170.9 15.5 175 1-179 17-272 (830)
25 PHA02790 Kelch-like protein; P 99.9 1.4E-25 2.9E-30 173.0 18.5 140 18-179 267-415 (480)
26 KOG4152|consensus 99.9 3.9E-24 8.4E-29 158.9 15.4 159 11-179 135-340 (830)
27 KOG2437|consensus 99.7 3.7E-17 8E-22 121.7 4.8 168 10-180 258-456 (723)
28 COG3055 Uncharacterized protei 99.6 9.2E-15 2E-19 105.0 12.3 167 5-179 29-236 (381)
29 PF13964 Kelch_6: Kelch motif 99.5 1.9E-13 4.1E-18 73.1 6.1 50 50-110 1-50 (50)
30 KOG2437|consensus 99.4 2.5E-13 5.5E-18 101.6 5.6 126 46-180 256-394 (723)
31 PF13964 Kelch_6: Kelch motif 99.4 1E-12 2.3E-17 70.2 5.7 47 109-156 1-47 (50)
32 COG3055 Uncharacterized protei 99.4 1.1E-11 2.5E-16 89.3 10.4 119 45-180 31-155 (381)
33 PF13415 Kelch_3: Galactose ox 99.3 1E-11 2.2E-16 66.0 6.3 49 60-118 1-49 (49)
34 PLN02772 guanylate kinase 99.3 2.7E-11 5.9E-16 90.0 10.4 91 45-147 19-110 (398)
35 PF07646 Kelch_2: Kelch motif; 99.3 1.3E-11 2.8E-16 65.6 6.0 47 109-155 1-48 (49)
36 PF01344 Kelch_1: Kelch motif; 99.3 1.5E-11 3.2E-16 64.9 5.6 46 109-155 1-46 (47)
37 PF13415 Kelch_3: Galactose ox 99.3 2.4E-11 5.1E-16 64.6 6.2 49 119-170 1-49 (49)
38 PF13418 Kelch_4: Galactose ox 99.3 1.2E-11 2.5E-16 65.8 4.9 46 109-155 1-47 (49)
39 PF01344 Kelch_1: Kelch motif; 99.2 1.7E-11 3.6E-16 64.6 4.4 45 50-102 1-45 (47)
40 PF03089 RAG2: Recombination a 99.2 1.4E-09 2.9E-14 76.5 14.1 132 45-180 82-228 (337)
41 PF07646 Kelch_2: Kelch motif; 99.2 1.1E-10 2.3E-15 62.0 6.2 47 50-102 1-47 (49)
42 PF13418 Kelch_4: Galactose ox 99.2 6.7E-11 1.4E-15 62.9 4.8 44 50-101 1-45 (49)
43 PLN02772 guanylate kinase 99.1 3.3E-10 7.1E-15 84.3 9.2 73 106-179 21-94 (398)
44 PF13854 Kelch_5: Kelch motif 99.1 3.9E-10 8.6E-15 57.7 5.7 41 106-146 1-41 (42)
45 smart00612 Kelch Kelch domain. 99.0 6.2E-10 1.4E-14 58.4 4.9 47 62-120 1-47 (47)
46 PF13854 Kelch_5: Kelch motif 99.0 2.3E-09 4.9E-14 54.8 5.6 41 47-94 1-41 (42)
47 smart00612 Kelch Kelch domain. 98.9 4.9E-09 1.1E-13 54.9 4.6 47 121-172 1-47 (47)
48 PF03089 RAG2: Recombination a 98.7 3.3E-07 7.1E-12 64.8 10.9 110 62-180 40-173 (337)
49 PF07250 Glyoxal_oxid_N: Glyox 98.1 6.8E-05 1.5E-09 53.1 10.1 86 85-180 46-137 (243)
50 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.0011 2.3E-08 47.1 11.1 59 60-131 77-140 (243)
51 TIGR01640 F_box_assoc_1 F-box 96.9 0.021 4.5E-07 40.3 9.9 90 85-178 70-160 (230)
52 PF12768 Rax2: Cortical protei 96.2 0.12 2.6E-06 37.8 10.2 92 83-179 14-109 (281)
53 PF07893 DUF1668: Protein of u 95.4 0.8 1.7E-05 34.6 13.5 120 18-155 72-217 (342)
54 PF08268 FBA_3: F-box associat 93.1 1.4 3.1E-05 28.0 11.9 86 58-154 3-89 (129)
55 TIGR01640 F_box_assoc_1 F-box 92.2 3 6.5E-05 29.4 17.4 84 56-155 98-187 (230)
56 PF08268 FBA_3: F-box associat 92.0 1.6 3.6E-05 27.7 7.3 59 116-177 2-60 (129)
57 PF12217 End_beta_propel: Cata 91.4 4.2 9.1E-05 29.5 12.9 155 12-179 135-332 (367)
58 PF07893 DUF1668: Protein of u 90.0 6.9 0.00015 29.6 13.3 54 59-130 75-128 (342)
59 PF03178 CPSF_A: CPSF A subuni 88.2 8.9 0.00019 28.5 11.2 96 53-176 91-188 (321)
60 COG4257 Vgb Streptogramin lyas 86.7 3.3 7.1E-05 30.3 5.9 62 85-155 254-315 (353)
61 PRK11138 outer membrane biogen 85.4 15 0.00032 28.3 15.9 107 17-152 64-187 (394)
62 KOG0649|consensus 84.9 12 0.00027 26.9 11.1 82 46-154 111-195 (325)
63 PF05096 Glu_cyclase_2: Glutam 83.2 15 0.00033 26.7 13.0 99 52-177 46-145 (264)
64 cd00094 HX Hemopexin-like repe 82.9 13 0.00028 25.6 14.3 22 119-149 110-131 (194)
65 PF12768 Rax2: Cortical protei 80.7 20 0.00044 26.4 9.4 81 60-154 47-130 (281)
66 PRK11138 outer membrane biogen 79.5 26 0.00056 26.9 11.5 51 85-148 304-356 (394)
67 KOG2055|consensus 73.8 43 0.00093 26.5 9.3 74 61-156 225-299 (514)
68 PF08450 SGL: SMP-30/Gluconola 72.6 31 0.00067 24.4 10.7 56 84-155 21-78 (246)
69 PRK13684 Ycf48-like protein; P 72.4 39 0.00085 25.5 14.4 77 87-178 154-232 (334)
70 KOG2055|consensus 67.9 39 0.00084 26.8 7.0 58 87-151 282-339 (514)
71 PF02191 OLF: Olfactomedin-lik 60.5 62 0.0013 23.4 12.6 63 22-98 30-102 (250)
72 cd00094 HX Hemopexin-like repe 59.6 54 0.0012 22.5 12.8 62 60-148 110-178 (194)
73 TIGR03300 assembly_YfgL outer 59.0 78 0.0017 24.1 11.5 50 85-147 289-340 (377)
74 PLN03215 ascorbic acid mannose 59.0 83 0.0018 24.4 13.4 98 1-103 190-304 (373)
75 TIGR03300 assembly_YfgL outer 56.4 87 0.0019 23.8 14.4 104 16-151 59-171 (377)
76 PF15525 DUF4652: Domain of un 55.5 67 0.0015 22.2 10.0 72 81-156 84-159 (200)
77 PF05096 Glu_cyclase_2: Glutam 53.9 86 0.0019 23.0 10.4 107 12-148 44-160 (264)
78 smart00284 OLF Olfactomedin-li 53.6 85 0.0018 22.9 14.2 61 22-98 34-107 (255)
79 PF14870 PSII_BNR: Photosynthe 49.9 1.1E+02 0.0023 23.0 15.0 147 2-177 48-203 (302)
80 KOG0263|consensus 49.2 1.6E+02 0.0036 24.9 9.3 95 58-179 543-638 (707)
81 PF14870 PSII_BNR: Photosynthe 48.0 1.2E+02 0.0025 22.8 12.8 129 2-155 7-142 (302)
82 PLN00033 photosystem II stabil 47.5 1.4E+02 0.003 23.5 11.1 50 60-126 338-388 (398)
83 PRK04792 tolB translocation pr 43.3 1.7E+02 0.0036 23.2 9.3 62 85-154 330-391 (448)
84 KOG0310|consensus 42.1 1.8E+02 0.0039 23.3 7.6 98 58-180 77-174 (487)
85 KOG0310|consensus 41.7 1.8E+02 0.004 23.3 13.4 69 57-148 119-187 (487)
86 PF03178 CPSF_A: CPSF A subuni 40.9 1.5E+02 0.0032 22.0 9.4 76 85-175 62-143 (321)
87 PF14830 Haemocyan_bet_s: Haem 40.6 30 0.00065 21.3 2.2 25 119-144 36-60 (103)
88 PF12217 End_beta_propel: Cata 39.2 1.6E+02 0.0034 21.8 10.7 115 52-178 137-256 (367)
89 COG4946 Uncharacterized protei 38.6 2.1E+02 0.0046 23.2 9.6 126 10-162 169-310 (668)
90 TIGR02800 propeller_TolB tol-p 38.3 1.8E+02 0.004 22.3 9.8 61 85-154 302-363 (417)
91 KOG0281|consensus 37.8 1.2E+02 0.0026 23.4 5.3 39 85-128 340-378 (499)
92 PF13570 PQQ_3: PQQ-like domai 37.3 52 0.0011 15.7 4.2 25 114-146 16-40 (40)
93 PF06058 DCP1: Dcp1-like decap 35.9 37 0.00081 21.5 2.2 22 135-156 27-48 (122)
94 KOG1332|consensus 35.4 1.8E+02 0.0039 21.3 9.2 80 45-154 217-296 (299)
95 PF09910 DUF2139: Uncharacteri 32.6 2.2E+02 0.0048 21.5 9.6 97 60-177 117-219 (339)
96 PRK00178 tolB translocation pr 32.5 2.4E+02 0.0052 21.9 9.6 62 85-155 311-373 (430)
97 KOG0263|consensus 32.4 3.2E+02 0.0069 23.3 9.3 44 85-131 599-642 (707)
98 PF14157 YmzC: YmzC-like prote 31.5 78 0.0017 17.5 2.6 16 85-100 41-56 (63)
99 TIGR02608 delta_60_rpt delta-6 31.1 91 0.002 16.7 3.1 27 118-144 10-36 (55)
100 PRK04792 tolB translocation pr 30.9 2.7E+02 0.0059 22.0 10.1 62 85-154 286-347 (448)
101 PRK03629 tolB translocation pr 30.7 2.7E+02 0.0058 21.9 9.6 62 85-154 311-372 (429)
102 PF13540 RCC1_2: Regulator of 30.2 63 0.0014 14.5 2.7 16 15-30 9-25 (30)
103 PF08950 DUF1861: Protein of u 30.0 2.4E+02 0.0051 21.1 7.6 62 57-129 33-96 (298)
104 PF00614 PLDc: Phospholipase D 29.9 54 0.0012 14.7 1.6 16 17-32 8-23 (28)
105 KOG2321|consensus 29.4 1.8E+02 0.004 24.1 5.3 53 85-147 155-207 (703)
106 PF13088 BNR_2: BNR repeat-lik 29.4 2.1E+02 0.0047 20.4 6.1 80 94-176 193-275 (275)
107 TIGR03075 PQQ_enz_alc_DH PQQ-d 28.0 3.4E+02 0.0073 22.2 11.2 74 55-151 64-146 (527)
108 KOG0649|consensus 27.1 2.6E+02 0.0056 20.6 13.5 81 85-178 178-263 (325)
109 KOG0646|consensus 27.0 1.9E+02 0.004 23.1 4.9 59 53-130 84-145 (476)
110 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.0 3.5E+02 0.0076 22.1 11.9 118 15-151 62-197 (527)
111 PF03088 Str_synth: Strictosid 26.9 1.2E+02 0.0025 18.1 3.2 20 135-154 35-54 (89)
112 PRK11408 hypothetical protein; 25.8 1.1E+02 0.0023 20.2 3.0 19 84-102 46-64 (145)
113 PF08662 eIF2A: Eukaryotic tra 24.9 2.3E+02 0.0051 19.4 10.6 64 60-146 71-134 (194)
114 KOG0316|consensus 24.8 2.8E+02 0.0061 20.3 8.1 79 85-178 81-161 (307)
115 PF07443 HARP: HepA-related pr 24.5 35 0.00075 18.3 0.5 12 89-100 22-33 (55)
116 TIGR03032 conserved hypothetic 24.5 3.1E+02 0.0066 21.0 5.5 21 136-156 222-242 (335)
117 KOG4378|consensus 22.7 4.3E+02 0.0094 21.7 8.3 33 52-98 212-244 (673)
118 TIGR02377 MocE_fam_FeS Rieske 21.8 1.9E+02 0.004 17.3 3.5 34 139-176 66-99 (101)
119 KOG1645|consensus 21.5 1.3E+02 0.0029 23.6 3.2 25 59-96 245-269 (463)
120 smart00155 PLDc Phospholipase 21.1 96 0.0021 13.5 3.0 19 52-70 5-23 (28)
121 KOG0281|consensus 20.4 2.7E+02 0.0058 21.6 4.6 37 138-179 341-377 (499)
No 1
>KOG4693|consensus
Probab=100.00 E-value=6.7e-34 Score=195.33 Aligned_cols=172 Identities=39% Similarity=0.721 Sum_probs=155.1
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCc-----eeeecC----------------------CCCCCccee
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYV-----KRRPMD----------------------GEPPSYRDF 53 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~-----~~~~~~----------------------~~~p~~r~~ 53 (180)
++|....+..|+|..|+++.++++||-|||+.+.+.+. +++.++ +-.|-.|+.
T Consensus 2 ~~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG 81 (392)
T KOG4693|consen 2 ATWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG 81 (392)
T ss_pred ceEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcC
Confidence 57999999999999999999999999999987665543 344444 445778999
Q ss_pred eeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCcc
Q psy8877 54 HTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVE 133 (180)
Q Consensus 54 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~ 133 (180)
|..+.+++++|++||+++. ....+.++.||+++++|.+++.+|..|.+|-+|+++++++.+|||||+.++.+
T Consensus 82 HtvV~y~d~~yvWGGRND~--------egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 82 HTVVEYQDKAYVWGGRNDD--------EGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ 153 (392)
T ss_pred ceEEEEcceEEEEcCccCc--------ccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH
Confidence 9999999999999999873 45679999999999999999988999999999999999999999999998888
Q ss_pred ceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 134 EHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 134 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
+++.++.++|++|.+|+.+...+.+|.-|.+|+++++++.+|||||.
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR 200 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGR 200 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccc
Confidence 99999999999999999999999999999999999999999999983
No 2
>KOG4441|consensus
Probab=100.00 E-value=9.5e-33 Score=214.88 Aligned_cols=163 Identities=21% Similarity=0.373 Sum_probs=151.2
Q ss_pred ceEEeccCCCCCcCeeEEEeCCEEEEEcccc-CCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCC
Q psy8877 2 HWTVHLTGGPRRVNHAAVLNDNKIFTFGGYC-SGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 2 ~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~-~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
+|..+++|+.+|..+++++++++||++||.+ +....+.++.|| ++++.+|..++++++++.||++||.++
T Consensus 312 ~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg 391 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDG 391 (571)
T ss_pred cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccc
Confidence 6999999999999999999999999999998 577778999999 889999999999999999999999987
Q ss_pred CCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEE
Q psy8877 72 ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWAR 151 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~ 151 (180)
....+++++||+.+++|+.+.. |+.+|.+|+++.++++||++||.+.. ...+.++++|||.+++|+.
T Consensus 392 ---------~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~-~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 392 ---------EKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGS-SNCLNSVECYDPETNTWTL 458 (571)
T ss_pred ---------ccccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCC-ccccceEEEEcCCCCceee
Confidence 4677899999999999999864 88899999999999999999999886 2388999999999999999
Q ss_pred eecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 152 VIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 152 ~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
++++. .+|.+++++++++.||++||+
T Consensus 459 ~~~M~---~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 459 IAPMN---TRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred cCCcc---cccccceEEEECCEEEEECCc
Confidence 99975 889999999999999999995
No 3
>KOG4693|consensus
Probab=100.00 E-value=3e-33 Score=192.16 Aligned_cols=180 Identities=41% Similarity=0.781 Sum_probs=160.7
Q ss_pred CceEEe---ccCCCCCcCeeEEEeCCEEEEEccccC--CCCCceeeecC------------CCCCCcceeeeEEEECCEE
Q psy8877 1 MHWTVH---LTGGPRRVNHAAVLNDNKIFTFGGYCS--GEDYVKRRPMD------------GEPPSYRDFHTANIIDGRM 63 (180)
Q Consensus 1 ~~W~~~---~~~~~~r~~~~~~~~~~~iy~~GG~~~--~~~~~~~~~~~------------~~~p~~r~~~~~~~~~~~l 63 (180)
++|++. ...|..|-+|++|+.++..|+|||++. .+...+++++| +.+|.-|..|+++++++.+
T Consensus 115 ~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~M 194 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMM 194 (392)
T ss_pred ccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceE
Confidence 367665 456889999999999999999999753 34445666666 7778889999999999999
Q ss_pred EEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEE
Q psy8877 64 YIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYC 143 (180)
Q Consensus 64 yv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 143 (180)
|||||+.+..++..+...++.+.|-.+|..|..|.+.+..+..|..|..|++...++++|+|||+...-+...+++|.||
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~Fd 274 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFD 274 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecc
Confidence 99999999888888888999999999999999999998878889999999999999999999999876567889999999
Q ss_pred cCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 144 TRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 144 ~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
|++..|..+...+.-|.+|.-+++++.++++|+|||.
T Consensus 275 P~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 275 PKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 9999999999998889999999999999999999994
No 4
>KOG4441|consensus
Probab=100.00 E-value=3.1e-32 Score=212.01 Aligned_cols=164 Identities=21% Similarity=0.405 Sum_probs=150.2
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCC
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
++|..+++|..+|..++++++++.||++||.++....+.+++|| ++++.+|..+++++++++||++||.+.
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 57999999999999999999999999999999888888999999 778889999999999999999999887
Q ss_pred CCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEE
Q psy8877 72 ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWAR 151 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~ 151 (180)
. ..+++.+++|||.+++|+.+++ |+.+|.++.++.++++||++||+++. .....+++|||.+++|+.
T Consensus 439 ~--------~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~~~~iYvvGG~~~~--~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 439 S--------SNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVLNGKIYVVGGFDGT--SALSSVERYDPETNQWTM 505 (571)
T ss_pred C--------ccccceEEEEcCCCCceeecCC---cccccccceEEEECCEEEEECCccCC--CccceEEEEcCCCCceeE
Confidence 2 2378999999999999999874 99999999999999999999999883 456679999999999999
Q ss_pred eecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 152 VIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 152 ~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
++++. .+|..+.++.+++++|++||+
T Consensus 506 v~~m~---~~rs~~g~~~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 506 VAPMT---SPRSAVGVVVLGGKLYAVGGF 531 (571)
T ss_pred cccCc---cccccccEEEECCEEEEEecc
Confidence 98764 789999999999999999995
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-32 Score=212.21 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=143.1
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCC
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
++|..+++|+.+|..+++++++++||++||.......++++.|| +++|.+|..+++++++++||++||.+.
T Consensus 330 n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 330 KIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred CeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCc
Confidence 46999999999999999999999999999986655566777777 788999999999999999999999864
Q ss_pred CCCcc---------cCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEE
Q psy8877 72 ESSLY---------HSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRY 142 (180)
Q Consensus 72 ~~~~~---------~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 142 (180)
..... ........+.+++|||++++|+.++ .|+.+|..++++.++++||++||.+.. ......+++|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~-~~~~~~ve~Y 485 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDE-KNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCC-CccceeEEEe
Confidence 21000 0000112578999999999999986 488999999999999999999998753 2234568999
Q ss_pred EcCC-CcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 143 CTRR-QEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 143 d~~~-~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
||.+ ++|+.++++ |.+|..+++++++|+||++||+
T Consensus 486 dp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 486 NTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCY 521 (557)
T ss_pred cCCCCCCeeEcccc---CcccccceeEEECCEEEEEeee
Confidence 9999 899999875 5899999999999999999994
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-32 Score=210.31 Aligned_cols=165 Identities=21% Similarity=0.269 Sum_probs=141.3
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEcccc-CCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCC
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYC-SGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRG 70 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~-~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~ 70 (180)
.+|..++++|.+|..+++++++++||++||.. .....++++.|| +++|.+|..+++++++++||++||..
T Consensus 282 ~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 282 MEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred CeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcC
Confidence 36999999999999999999999999999975 333456677777 78899999999999999999999986
Q ss_pred CCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCc----------------cc
Q psy8877 71 DESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLV----------------EE 134 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~----------------~~ 134 (180)
. ....+++++||+.+++|+.++ +||.+|..++++.++++||++||.+... ..
T Consensus 362 ~---------~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 362 G---------TNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred C---------CCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4 234678999999999999986 4999999999999999999999986421 01
Q ss_pred eeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 135 HYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 135 ~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
..+.+++|||.+++|+.++++ +.+|..+++++++++||++||.
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDI 472 (557)
T ss_pred ccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCC
Confidence 257899999999999999885 4788899999999999999984
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.9e-31 Score=195.27 Aligned_cols=177 Identities=19% Similarity=0.358 Sum_probs=140.5
Q ss_pred CceEEeccCC-CCC---cCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCC-----CCcceeeeEEEECCE
Q psy8877 1 MHWTVHLTGG-PRR---VNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEP-----PSYRDFHTANIIDGR 62 (180)
Q Consensus 1 ~~W~~~~~~~-~~r---~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~-----p~~r~~~~~~~~~~~ 62 (180)
.+|..+++++ .|| .+|++++++++||+|||.......+++++|| .++ |.+|..|++++.+++
T Consensus 60 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~ 139 (341)
T PLN02153 60 HTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENH 139 (341)
T ss_pred CEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCE
Confidence 3699887664 344 3789999999999999986665566777777 233 789999999999999
Q ss_pred EEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCC------cccee
Q psy8877 63 MYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGL------VEEHY 136 (180)
Q Consensus 63 lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~------~~~~~ 136 (180)
|||+||....... +....++++++||+.+++|++++..+..|.+|.+|+++.++++|||+||.... .....
T Consensus 140 iyv~GG~~~~~~~---~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~ 216 (341)
T PLN02153 140 VYVFGGVSKGGLM---KTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYES 216 (341)
T ss_pred EEEECCccCCCcc---CCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceec
Confidence 9999998642100 01124578999999999999998655566889999999999999999987421 11235
Q ss_pred ceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 137 NDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 137 ~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
+++++||+.+++|++++..+..|.+|..+++++++++||||||.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 78999999999999998766678899999999999999999993
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.5e-31 Score=195.07 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=135.4
Q ss_pred ceEEecc----CCCCCcCeeEEEeCCEEEEEccccCC--CCCceeeecC---------CCC-CCcc---eeeeEEEECCE
Q psy8877 2 HWTVHLT----GGPRRVNHAAVLNDNKIFTFGGYCSG--EDYVKRRPMD---------GEP-PSYR---DFHTANIIDGR 62 (180)
Q Consensus 2 ~W~~~~~----~~~~r~~~~~~~~~~~iy~~GG~~~~--~~~~~~~~~~---------~~~-p~~r---~~~~~~~~~~~ 62 (180)
+|..+.+ +|.||..|++++++++|||+||.... ...++++.|| ..+ +.+| ..|++++++++
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~ 87 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTK 87 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCE
Confidence 6998865 68899999999999999999997532 2335777777 221 2233 36788899999
Q ss_pred EEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCC--CCCCCCceeeEEEEECCEEEEEcCccCCc----ccee
Q psy8877 63 MYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTT--GSVPVGRRSHSAFVYGDGLYIFGGYNGLV----EEHY 136 (180)
Q Consensus 63 lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~--~~~~~~r~~~~~~~~~~~i~v~GG~~~~~----~~~~ 136 (180)
||+|||... ....+++++||+.+++|+.++.. ...|.+|..|+++..+++|||+||..... ....
T Consensus 88 iyv~GG~~~---------~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 88 LYIFGGRDE---------KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEECCCCC---------CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 999999865 23468999999999999998641 12378999999999999999999986421 1235
Q ss_pred ceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 137 NDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 137 ~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
.++++||+++++|+.++.+...|.+|..+++++++++||++||.
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 68999999999999998876566789999999999999999873
No 9
>PLN02193 nitrile-specifier protein
Probab=99.98 E-value=1.3e-30 Score=200.22 Aligned_cols=168 Identities=20% Similarity=0.386 Sum_probs=142.3
Q ss_pred CceEEeccC---CC-CCcCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCC---CCcceeeeEEEECCEEE
Q psy8877 1 MHWTVHLTG---GP-RRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEP---PSYRDFHTANIIDGRMY 64 (180)
Q Consensus 1 ~~W~~~~~~---~~-~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~---p~~r~~~~~~~~~~~ly 64 (180)
.+|..++.+ |. +|.+|++++++++||++||.......+++++|| .++ |.+|..|++++++++||
T Consensus 203 ~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY 282 (470)
T PLN02193 203 RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY 282 (470)
T ss_pred CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE
Confidence 369887543 32 357899999999999999987666677888887 233 88999999999999999
Q ss_pred EEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEc
Q psy8877 65 IWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCT 144 (180)
Q Consensus 65 v~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~ 144 (180)
|+||... ....+++++||+.+++|++++..+.+|.+|..|+++.+++++|++||.... ..+++++||+
T Consensus 283 v~GG~~~---------~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~---~~~dv~~yD~ 350 (470)
T PLN02193 283 VFGGVSA---------TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC---EVDDVHYYDP 350 (470)
T ss_pred EECCCCC---------CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC---ccCceEEEEC
Confidence 9999865 234688999999999999987656678899999999999999999997643 3689999999
Q ss_pred CCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 145 RRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 145 ~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
.+++|++++..+..|.+|..|+++.++++|||+||.
T Consensus 351 ~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 351 VQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 999999998876678899999999999999999993
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=8.3e-31 Score=193.22 Aligned_cols=164 Identities=23% Similarity=0.383 Sum_probs=131.8
Q ss_pred ceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC-------------CCCCCcceeeeEEEECCEEEEEcC
Q psy8877 2 HWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD-------------GEPPSYRDFHTANIIDGRMYIWGG 68 (180)
Q Consensus 2 ~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~-------------~~~p~~r~~~~~~~~~~~lyv~GG 68 (180)
+|..++++|.+|..+++++++++||++||.......++++.|| +++|.+|..|++++++++||++||
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG 131 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGG 131 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeC
Confidence 6999999999999888999999999999986655555665554 567889999999999999999999
Q ss_pred CCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCC-CCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCC
Q psy8877 69 RGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVP-VGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ 147 (180)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~ 147 (180)
... ....+++++||+.+++|++++. +| .+|..|+++.++++|||+||.+.. ...++++||++++
T Consensus 132 ~~~---------~~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~~---~~~~~~~yd~~~~ 196 (323)
T TIGR03548 132 NRN---------GKPSNKSYLFNLETQEWFELPD---FPGEPRVQPVCVKLQNELYVFGGGSNI---AYTDGYKYSPKKN 196 (323)
T ss_pred cCC---------CccCceEEEEcCCCCCeeECCC---CCCCCCCcceEEEECCEEEEEcCCCCc---cccceEEEecCCC
Confidence 754 2346899999999999999864 55 478888888999999999998643 2457899999999
Q ss_pred cEEEeecCCC--CCCCCcceeEEE-ECCEEEEEcCC
Q psy8877 148 EWARVIPHGA--PPTKRRRQSCII-KGDTLIMFGGS 180 (180)
Q Consensus 148 ~W~~~~~~~~--~~~~r~~~~~~~-~~~~i~~~GG~ 180 (180)
+|+.++.+.. .|..+..+++++ .+++||++||.
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF 232 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECCc
Confidence 9999987642 334444444444 47899999994
No 11
>PLN02193 nitrile-specifier protein
Probab=99.98 E-value=2e-30 Score=199.13 Aligned_cols=168 Identities=20% Similarity=0.284 Sum_probs=138.1
Q ss_pred ceEEecc---CCCCCcCeeEEEeCCEEEEEccccCC-C-CCceeeecC------------CCCCC-cceeeeEEEECCEE
Q psy8877 2 HWTVHLT---GGPRRVNHAAVLNDNKIFTFGGYCSG-E-DYVKRRPMD------------GEPPS-YRDFHTANIIDGRM 63 (180)
Q Consensus 2 ~W~~~~~---~~~~r~~~~~~~~~~~iy~~GG~~~~-~-~~~~~~~~~------------~~~p~-~r~~~~~~~~~~~l 63 (180)
+|.++.+ +|.||.+|++++++++||++||.... . ..+++++|| ...|. +|..|++++++++|
T Consensus 152 ~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~l 231 (470)
T PLN02193 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTL 231 (470)
T ss_pred eEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEE
Confidence 7988865 57799999999999999999997432 2 235677777 12333 35678889999999
Q ss_pred EEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEE
Q psy8877 64 YIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYC 143 (180)
Q Consensus 64 yv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d 143 (180)
|||||... ....+++++||+.+++|++++..+..|.+|..|+++..+++|||+||.... ....++++||
T Consensus 232 YvfGG~~~---------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~--~~~~~~~~yd 300 (470)
T PLN02193 232 YVFGGRDA---------SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT--ARLKTLDSYN 300 (470)
T ss_pred EEECCCCC---------CCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC--CCcceEEEEE
Confidence 99999865 234689999999999999987644458899999999999999999998764 4567899999
Q ss_pred cCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 144 TRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 144 ~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
+.+++|+.++.+...|.+|..|++++++++||++||.
T Consensus 301 ~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~ 337 (470)
T PLN02193 301 IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGF 337 (470)
T ss_pred CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECC
Confidence 9999999998765567889999999999999999984
No 12
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=202.40 Aligned_cols=166 Identities=16% Similarity=0.259 Sum_probs=141.9
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCC
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
++|..+++++.+|..|++++++++||++||.......++++.|| +++|.+|..++++.++++||++||...
T Consensus 321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred CeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC
Confidence 47999999999999999999999999999987555566777777 678999999999999999999999754
Q ss_pred CCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCcc-ceeceeeEEEcCCCcEE
Q psy8877 72 ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVE-EHYNDIYRYCTRRQEWA 150 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~d~~~~~W~ 150 (180)
. ....+++++||+.+++|+.++ .+|.+|.+|+++..+++||++||...... ...+.+++||+.+++|+
T Consensus 401 ~--------~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 401 N--------DELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred C--------CcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 2 234688999999999999986 48889999999999999999999865311 23567999999999999
Q ss_pred EeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 151 RVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 151 ~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
.++.+ +.+|..++++.++++||++||.
T Consensus 470 ~~~~~---~~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 470 ELSSL---NFPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred eCCCC---CcccccceEEEECCEEEEEcCC
Confidence 99864 4678888888899999999994
No 13
>KOG0379|consensus
Probab=99.97 E-value=1.2e-29 Score=194.61 Aligned_cols=170 Identities=29% Similarity=0.497 Sum_probs=150.6
Q ss_pred ceEEe---ccCCCCCcCeeEEEeCCEEEEEccccC-CCCCceeeecC------------CCCCCcceeeeEEEECCEEEE
Q psy8877 2 HWTVH---LTGGPRRVNHAAVLNDNKIFTFGGYCS-GEDYVKRRPMD------------GEPPSYRDFHTANIIDGRMYI 65 (180)
Q Consensus 2 ~W~~~---~~~~~~r~~~~~~~~~~~iy~~GG~~~-~~~~~~~~~~~------------~~~p~~r~~~~~~~~~~~lyv 65 (180)
.|... ...|.+|.+|+++.++++||+|||... ....++++.|| +.+|.+|.+|+++.+++++||
T Consensus 99 ~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~v 178 (482)
T KOG0379|consen 99 LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVV 178 (482)
T ss_pred ccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEE
Confidence 35544 334679999999999999999999874 44467888888 667999999999999999999
Q ss_pred EcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcC
Q psy8877 66 WGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTR 145 (180)
Q Consensus 66 ~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~ 145 (180)
|||.... ....+++|+||+++.+|.++.+.+..|.||++|+++.++++++|+||.... +..++|++.+|+.
T Consensus 179 fGG~~~~--------~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~-~~~l~D~~~ldl~ 249 (482)
T KOG0379|consen 179 FGGIGGT--------GDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG-DVYLNDVHILDLS 249 (482)
T ss_pred ECCccCc--------ccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccC-CceecceEeeecc
Confidence 9999873 237899999999999999999999999999999999999999999998843 5799999999999
Q ss_pred CCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 146 RQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 146 ~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
+.+|.++...+..|.+|+.|+.++.++.++++||.
T Consensus 250 ~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 250 TWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred cceeeeccccCCCCCCcceeeeEEECCEEEEEcCC
Confidence 99999888888899999999999889999999984
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=3e-29 Score=184.93 Aligned_cols=167 Identities=18% Similarity=0.249 Sum_probs=130.3
Q ss_pred ceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCCC-CcceeeeEEEECCEEEEEcCCCC
Q psy8877 2 HWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPP-SYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 2 ~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p-~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
+|..++++|.+|..|++++++++||++||.......+++++|| .++| .+|..++++.++++|||+||.+.
T Consensus 103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~ 182 (323)
T TIGR03548 103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSN 182 (323)
T ss_pred eeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCC
Confidence 3578899999999999999999999999976555567888888 4455 47888888899999999999864
Q ss_pred CCCcccCCCceecCcEEEEECCCCeEEeecCCC--CCCCCceeeEEE-EECCEEEEEcCccCCc----------------
Q psy8877 72 ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTG--SVPVGRRSHSAF-VYGDGLYIFGGYNGLV---------------- 132 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~--~~~~~r~~~~~~-~~~~~i~v~GG~~~~~---------------- 132 (180)
....++++||+++++|+.++... ..|..+..++++ ..+++||++||.+...
T Consensus 183 ----------~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 252 (323)
T TIGR03548 183 ----------IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESL 252 (323)
T ss_pred ----------ccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhh
Confidence 12356899999999999986421 234444444444 4478999999986420
Q ss_pred --------------cceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 133 --------------EEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 133 --------------~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
..+.+++++||+.+++|+.++.+ +..+|..++++.++++||++||.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 253 KGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred hhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEecc
Confidence 01246799999999999999864 22579999999999999999993
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=193.92 Aligned_cols=150 Identities=19% Similarity=0.285 Sum_probs=129.7
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCC
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
++|..+++|+.+|..+++++++++||++||.... +.++.|+ +++|.+|..+++++++++||++||...
T Consensus 297 ~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~ 373 (480)
T PHA02790 297 NNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE 373 (480)
T ss_pred CEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC
Confidence 4699999999999999999999999999997432 2334444 788999999999999999999999754
Q ss_pred CCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEE
Q psy8877 72 ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWAR 151 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~ 151 (180)
. .+.+++||+.+++|+.++. ++.+|..|+++.++++||++||. .++||+++++|+.
T Consensus 374 ----------~-~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~~~~~IYv~GG~----------~e~ydp~~~~W~~ 429 (480)
T PHA02790 374 ----------T-DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALVFGRRLFLVGRN----------AEFYCESSNTWTL 429 (480)
T ss_pred ----------C-CccEEEEeCCCCEEEeCCC---CCCccccceEEEECCEEEEECCc----------eEEecCCCCcEeE
Confidence 1 2568999999999999864 88999999999999999999983 4679999999999
Q ss_pred eecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 152 VIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 152 ~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
++++ +.+|..+++++++|+||++||.
T Consensus 430 ~~~m---~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 430 IDDP---IYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred cCCC---CCCccccEEEEECCEEEEECCc
Confidence 9875 4789999999999999999994
No 16
>KOG0379|consensus
Probab=99.97 E-value=1.6e-29 Score=194.04 Aligned_cols=163 Identities=34% Similarity=0.608 Sum_probs=146.1
Q ss_pred CCCCCcCeeEEEeCCEEEEEccccCCCCCce--eeecC------------CCCCCcceeeeEEEECCEEEEEcCCCCCCC
Q psy8877 9 GGPRRVNHAAVLNDNKIFTFGGYCSGEDYVK--RRPMD------------GEPPSYRDFHTANIIDGRMYIWGGRGDESS 74 (180)
Q Consensus 9 ~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~--~~~~~------------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 74 (180)
.|.+|.+|+++.+++++||+||......... ++.+| +..|.+|..|++++++++||+|||....
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~-- 134 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK-- 134 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC--
Confidence 5679999999999999999999776655544 77777 6678999999999999999999999852
Q ss_pred cccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 75 LYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 75 ~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
....++++.||+.+++|..+...+..|.+|.+|+++..++++|||||.... ....+++|+||+++.+|.++..
T Consensus 135 ------~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 135 ------YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred ------CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc-ccceeeeeeeccccccceeccc
Confidence 344789999999999999998888889999999999999999999999876 3389999999999999999999
Q ss_pred CCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 155 HGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 155 ~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
.+..|.||.+|+++++++++++|||.
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEecc
Confidence 99889999999999999999999983
No 17
>KOG1230|consensus
Probab=99.97 E-value=5.4e-29 Score=179.79 Aligned_cols=175 Identities=25% Similarity=0.469 Sum_probs=149.4
Q ss_pred CceEEe--ccCCCCCcCeeEEEeC-CEEEEEccccCCC------CCceeeecC-----------CCCCCcceeeeEEEEC
Q psy8877 1 MHWTVH--LTGGPRRVNHAAVLND-NKIFTFGGYCSGE------DYVKRRPMD-----------GEPPSYRDFHTANIID 60 (180)
Q Consensus 1 ~~W~~~--~~~~~~r~~~~~~~~~-~~iy~~GG~~~~~------~~~~~~~~~-----------~~~p~~r~~~~~~~~~ 60 (180)
+.|+++ +..|+||..|+++++. +.+|+|||-..+. -++++|.|+ +-.|.+|+.|.+++..
T Consensus 108 ~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK 187 (521)
T KOG1230|consen 108 NEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK 187 (521)
T ss_pred cceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEee
Confidence 369888 5668899999999987 8899999954332 246777777 5689999999999999
Q ss_pred CEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEE-CCEEEEEcCccCC-------c
Q psy8877 61 GRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVY-GDGLYIFGGYNGL-------V 132 (180)
Q Consensus 61 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~-------~ 132 (180)
.+|++|||..+.+. ...+.+|+|+||+++-+|.++++.|..|.+|.+|+.++. ++.|||+||++.. .
T Consensus 188 ~~lilFGGFhd~nr-----~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dK 262 (521)
T KOG1230|consen 188 RQLILFGGFHDSNR-----DYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDK 262 (521)
T ss_pred eeEEEEcceecCCC-----ceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhc
Confidence 99999999976443 367889999999999999999988888999999999988 8999999998632 1
Q ss_pred cceeceeeEEEcCC-----CcEEEeecCCCCCCCCcceeEEEE-CCEEEEEcCC
Q psy8877 133 EEHYNDIYRYCTRR-----QEWARVIPHGAPPTKRRRQSCIIK-GDTLIMFGGS 180 (180)
Q Consensus 133 ~~~~~~~~~~d~~~-----~~W~~~~~~~~~~~~r~~~~~~~~-~~~i~~~GG~ 180 (180)
....+|+|.+++.+ -.|+++.+.+.+|.||.++++++. +++-+.|||+
T Consensus 263 G~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV 316 (521)
T KOG1230|consen 263 GTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGV 316 (521)
T ss_pred CceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecce
Confidence 35678999999988 799999999999999999999887 5599999995
No 18
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=3.1e-28 Score=190.43 Aligned_cols=162 Identities=15% Similarity=0.228 Sum_probs=133.9
Q ss_pred ceEEeccCCCCCcCeeEEEeCCEEEEEccccCCC-CCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCC
Q psy8877 2 HWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGE-DYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGD 71 (180)
Q Consensus 2 ~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~-~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~ 71 (180)
+|..+++.+ .+..+++++++++||++||..... ..++++.|| +++|.+|..++++.++++||++||...
T Consensus 275 ~~~~~~~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~ 353 (534)
T PHA03098 275 EINTIIDIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN 353 (534)
T ss_pred hcccccCcc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCC
Confidence 354544433 345578999999999999976543 335677777 678889999999999999999999864
Q ss_pred CCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEE
Q psy8877 72 ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWAR 151 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~ 151 (180)
....+++++||+.+++|+.++ ++|.+|..|+++.++++||++||.... ....+++++||+.+++|+.
T Consensus 354 ---------~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 354 ---------SISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKN-DELLKTVECFSLNTNKWSK 420 (534)
T ss_pred ---------CEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCC-CcccceEEEEeCCCCeeee
Confidence 345688999999999999976 488999999999999999999997654 2357889999999999999
Q ss_pred eecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 152 VIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 152 ~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
++++ |.+|..++++.++++||++||.
T Consensus 421 ~~~~---p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 421 GSPL---PISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred cCCC---CccccCceEEEECCEEEEECCc
Confidence 8764 5789999999999999999994
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=7.1e-28 Score=179.27 Aligned_cols=176 Identities=17% Similarity=0.241 Sum_probs=125.8
Q ss_pred CceEEeccCC-CCCcCeeEEEeCCEEEEEccccCCC------CCceeeecC---------C-CCCCcceeeeEE-EECCE
Q psy8877 1 MHWTVHLTGG-PRRVNHAAVLNDNKIFTFGGYCSGE------DYVKRRPMD---------G-EPPSYRDFHTAN-IIDGR 62 (180)
Q Consensus 1 ~~W~~~~~~~-~~r~~~~~~~~~~~iy~~GG~~~~~------~~~~~~~~~---------~-~~p~~r~~~~~~-~~~~~ 62 (180)
.+|..+++|| .+|..+++++++++||++||..... ..+++++|| . .+|.+|..++++ .++++
T Consensus 41 ~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~ 120 (346)
T TIGR03547 41 KGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQ 120 (346)
T ss_pred CCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCE
Confidence 3699999998 6999999999999999999975322 346777777 2 344555666665 68999
Q ss_pred EEEEcCCCCCCC--c------ccC-----------------CCceecCcEEEEECCCCeEEeecCCCCCCC-CceeeEEE
Q psy8877 63 MYIWGGRGDESS--L------YHS-----------------GSEVYCPDLVYLDLKYFTWIRPNTTGSVPV-GRRSHSAF 116 (180)
Q Consensus 63 lyv~GG~~~~~~--~------~~~-----------------~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~-~r~~~~~~ 116 (180)
||++||...... . ... ......+++++||+.+++|+.++. +|. +|..++++
T Consensus 121 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~---~p~~~r~~~~~~ 197 (346)
T TIGR03547 121 AYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE---NPFLGTAGSAIV 197 (346)
T ss_pred EEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc---CCCCcCCCceEE
Confidence 999999753100 0 000 000124789999999999999863 775 68888889
Q ss_pred EECCEEEEEcCccCCccceeceeeEEE--cCCCcEEEeecCCCC----CCCCcceeEEEECCEEEEEcCC
Q psy8877 117 VYGDGLYIFGGYNGLVEEHYNDIYRYC--TRRQEWARVIPHGAP----PTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 117 ~~~~~i~v~GG~~~~~~~~~~~~~~~d--~~~~~W~~~~~~~~~----~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
.++++|||+||.... .....+++.|+ +++++|+.++++..+ +..+..+++++++++||++||.
T Consensus 198 ~~~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 198 HKGNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred EECCEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecC
Confidence 999999999998643 12234565555 577799999887421 1223456677889999999994
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=9.9e-28 Score=178.48 Aligned_cols=164 Identities=23% Similarity=0.343 Sum_probs=126.4
Q ss_pred eccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC-----------CCCC-CcceeeeEEEECCEEEEEcCCCCCC
Q psy8877 6 HLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD-----------GEPP-SYRDFHTANIIDGRMYIWGGRGDES 73 (180)
Q Consensus 6 ~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~-----------~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~ 73 (180)
++++|.+|..+++++++++|||+||... +.++.+| +++| .+|..+++++++++||++||.....
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence 4678899999999999999999999633 2344433 5667 5899999999999999999985421
Q ss_pred CcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEE-EECCEEEEEcCccCCcc-------------------
Q psy8877 74 SLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAF-VYGDGLYIFGGYNGLVE------------------- 133 (180)
Q Consensus 74 ~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~------------------- 133 (180)
. ......++++++||+.+++|++++. .+|.+|.+|+++ .++++||++||......
T Consensus 77 ~---~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 77 S---EGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred C---CCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 0 0012356899999999999999863 367778888776 68999999999753200
Q ss_pred -------------ceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 134 -------------EHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 134 -------------~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
...+++++||+.+++|+.++++. ..+|..++++.++++||++||.
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p--~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP--FLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccCC--CCcCCCceEEEECCEEEEEeee
Confidence 01368999999999999998752 2367888888899999999983
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=8.2e-27 Score=175.06 Aligned_cols=167 Identities=23% Similarity=0.337 Sum_probs=127.4
Q ss_pred ceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC-----------CCCC-CcceeeeEEEECCEEEEEcCC
Q psy8877 2 HWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD-----------GEPP-SYRDFHTANIIDGRMYIWGGR 69 (180)
Q Consensus 2 ~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~-----------~~~p-~~r~~~~~~~~~~~lyv~GG~ 69 (180)
.++.++++|.||..+++++++++|||+||.... .++.+| .++| .+|..++++.++++||++||.
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~~----~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAGT----SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCCC----eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCC
Confidence 467789999999988999999999999996332 233332 3445 589999999999999999997
Q ss_pred CCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEE-ECCEEEEEcCccCCc----------------
Q psy8877 70 GDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFV-YGDGLYIFGGYNGLV---------------- 132 (180)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~---------------- 132 (180)
.... ........+++++||+.+++|++++. ..|.++.+|+++. .+++||++||.....
T Consensus 94 ~~~~---~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 94 GKTN---SEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred CCCC---CCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 5410 00012456899999999999999864 3567777888776 799999999975310
Q ss_pred ----------------cceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcC
Q psy8877 133 ----------------EEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGG 179 (180)
Q Consensus 133 ----------------~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG 179 (180)
....+++++||+.+++|+.+.+++ ..+|..++++.++++||++||
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p--~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESP--FLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCC--CCCCCcceEEEECCEEEEEee
Confidence 002468999999999999987642 236778888888999999998
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=3.9e-26 Score=171.38 Aligned_cols=175 Identities=18% Similarity=0.302 Sum_probs=122.5
Q ss_pred ceEEeccCC-CCCcCeeEEEeCCEEEEEccccC-C-----CCCceeeecC---------C-CCCCcceeeeEEE-ECCEE
Q psy8877 2 HWTVHLTGG-PRRVNHAAVLNDNKIFTFGGYCS-G-----EDYVKRRPMD---------G-EPPSYRDFHTANI-IDGRM 63 (180)
Q Consensus 2 ~W~~~~~~~-~~r~~~~~~~~~~~iy~~GG~~~-~-----~~~~~~~~~~---------~-~~p~~r~~~~~~~-~~~~l 63 (180)
+|..++++| .+|..+++++++++||++||... . ...++++.|| . ..|.++..|++++ .+++|
T Consensus 63 ~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~I 142 (376)
T PRK14131 63 GWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKA 142 (376)
T ss_pred CeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEE
Confidence 699999887 58999999999999999999754 1 1246677777 2 2355566677666 79999
Q ss_pred EEEcCCCCCC--C-------------c-------c---cCCCceecCcEEEEECCCCeEEeecCCCCCCC-CceeeEEEE
Q psy8877 64 YIWGGRGDES--S-------------L-------Y---HSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPV-GRRSHSAFV 117 (180)
Q Consensus 64 yv~GG~~~~~--~-------------~-------~---~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~-~r~~~~~~~ 117 (180)
|++||..... . + + ........+++++||+.+++|+.+. .+|. +|..|+++.
T Consensus 143 Yv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~ 219 (376)
T PRK14131 143 YITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVI 219 (376)
T ss_pred EEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEE
Confidence 9999975310 0 0 0 0000012478999999999999975 3675 688888889
Q ss_pred ECCEEEEEcCccCCccceeceee--EEEcCCCcEEEeecCCCCC-----CCCcceeEEEECCEEEEEcCC
Q psy8877 118 YGDGLYIFGGYNGLVEEHYNDIY--RYCTRRQEWARVIPHGAPP-----TKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 118 ~~~~i~v~GG~~~~~~~~~~~~~--~~d~~~~~W~~~~~~~~~~-----~~r~~~~~~~~~~~i~~~GG~ 180 (180)
++++|||+||.... .....+++ .||+++++|+.++.+..+. ..+..+.+++++++||++||.
T Consensus 220 ~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 220 KGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred ECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeecc
Confidence 99999999997543 12233444 4577899999998764111 111233356789999999983
No 23
>KOG1230|consensus
Probab=99.95 E-value=1.7e-26 Score=166.95 Aligned_cols=169 Identities=24% Similarity=0.415 Sum_probs=139.2
Q ss_pred cCCCCCcCeeEEEeC--CEEEEEccccCC----CCCceeeecC-----------CCCCCcceeeeEEEEC-CEEEEEcCC
Q psy8877 8 TGGPRRVNHAAVLND--NKIFTFGGYCSG----EDYVKRRPMD-----------GEPPSYRDFHTANIID-GRMYIWGGR 69 (180)
Q Consensus 8 ~~~~~r~~~~~~~~~--~~iy~~GG~~~~----~~~~~~~~~~-----------~~~p~~r~~~~~~~~~-~~lyv~GG~ 69 (180)
+.|.||.+.+++++. +.|++|||-..+ ..+++++.|+ +..|.||+.|.++++. +.+|+|||-
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccc
Confidence 456799999999975 579999994332 2345666666 7789999999998886 799999996
Q ss_pred CCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCc--cceeceeeEEEcCCC
Q psy8877 70 GDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLV--EEHYNDIYRYCTRRQ 147 (180)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~d~~~~ 147 (180)
-. .+++..... ..++|.||+.+++|++++..| .|.+|.+|.+++...+++||||.-+.. -.+++|+|+||+++-
T Consensus 142 fa--SPnq~qF~H-YkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdty 217 (521)
T KOG1230|consen 142 FA--SPNQEQFHH-YKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTY 217 (521)
T ss_pred cC--Ccchhhhhh-hhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccce
Confidence 33 123333334 489999999999999999755 899999999999999999999987653 247899999999999
Q ss_pred cEEEeecCCCCCCCCcceeEEEE-CCEEEEEcCC
Q psy8877 148 EWARVIPHGAPPTKRRRQSCIIK-GDTLIMFGGS 180 (180)
Q Consensus 148 ~W~~~~~~~~~~~~r~~~~~~~~-~~~i~~~GG~ 180 (180)
+|+++.+.+..|.+|.++...+. .+.|+|.||+
T Consensus 218 kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 218 KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred eeeeccCCCCCCCCCCcceEEecCCCcEEEEcch
Confidence 99999997777999999999887 8999999996
No 24
>KOG4152|consensus
Probab=99.95 E-value=2e-26 Score=170.88 Aligned_cols=175 Identities=26% Similarity=0.446 Sum_probs=146.6
Q ss_pred CceEEe----ccCCCCCcCeeEEEeCCEEEEEccccCCCCCceeeecC--------------------------------
Q psy8877 1 MHWTVH----LTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYVKRRPMD-------------------------------- 44 (180)
Q Consensus 1 ~~W~~~----~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~-------------------------------- 44 (180)
.+|+.+ .+.|.||.+|-++++.+-|.+|||-+ ....++++.|+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril 95 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL 95 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence 478887 34466889999999999899998832 12223333333
Q ss_pred -----------------------------------CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEE
Q psy8877 45 -----------------------------------GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVY 89 (180)
Q Consensus 45 -----------------------------------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 89 (180)
+.+|.||..|+...++++.|+|||..+......+|...+++|+|+
T Consensus 96 vFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~ 175 (830)
T KOG4152|consen 96 VFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYI 175 (830)
T ss_pred EEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEE
Confidence 678999999999999999999999977665667778899999999
Q ss_pred EECCCC----eEEeecCCCCCCCCceeeEEEEE------CCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCC
Q psy8877 90 LDLKYF----TWIRPNTTGSVPVGRRSHSAFVY------GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPP 159 (180)
Q Consensus 90 ~d~~~~----~w~~~~~~~~~~~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~ 159 (180)
+++.-. .|....+.|..|.+|-.|.+++. ..+++|+||... ..++|+|.+|+++.+|.+....+..|
T Consensus 176 leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~Tl~W~kp~~~G~~P 252 (830)
T KOG4152|consen 176 LELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLDTLTWNKPSLSGVAP 252 (830)
T ss_pred EEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc---ccccceeEEecceeecccccccCCCC
Confidence 998744 59998888999999999999876 247999999976 57899999999999999998888889
Q ss_pred CCCcceeEEEECCEEEEEcC
Q psy8877 160 TKRRRQSCIIKGDTLIMFGG 179 (180)
Q Consensus 160 ~~r~~~~~~~~~~~i~~~GG 179 (180)
.||..|+++.++|++|+|||
T Consensus 253 lPRSLHsa~~IGnKMyvfGG 272 (830)
T KOG4152|consen 253 LPRSLHSATTIGNKMYVFGG 272 (830)
T ss_pred CCcccccceeecceeEEecc
Confidence 99999999999999999998
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=1.4e-25 Score=172.96 Aligned_cols=140 Identities=13% Similarity=0.192 Sum_probs=120.2
Q ss_pred EEEeCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEE
Q psy8877 18 AVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLV 88 (180)
Q Consensus 18 ~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 88 (180)
.+..++.||++||.......+.++.|| ++++.+|..+++++++++||++||... .+.++
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------------~~sve 334 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------------PTSVE 334 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------------CCceE
Confidence 445899999999986555556677777 778999999999999999999999754 15689
Q ss_pred EEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEE
Q psy8877 89 YLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCI 168 (180)
Q Consensus 89 ~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~ 168 (180)
+||+.+++|..++ ++|.+|..|+++.++++||++||.... ...+++|||.+++|+.++++ +.+|..++++
T Consensus 335 ~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~ 404 (480)
T PHA02790 335 RWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET----DTTTEYLLPNHDQWQFGPST---YYPHYKSCAL 404 (480)
T ss_pred EEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC----CccEEEEeCCCCEEEeCCCC---CCccccceEE
Confidence 9999999999986 489999999999999999999998543 35789999999999999885 4788889999
Q ss_pred EECCEEEEEcC
Q psy8877 169 IKGDTLIMFGG 179 (180)
Q Consensus 169 ~~~~~i~~~GG 179 (180)
+++++||++||
T Consensus 405 ~~~~~IYv~GG 415 (480)
T PHA02790 405 VFGRRLFLVGR 415 (480)
T ss_pred EECCEEEEECC
Confidence 99999999998
No 26
>KOG4152|consensus
Probab=99.92 E-value=3.9e-24 Score=158.90 Aligned_cols=159 Identities=28% Similarity=0.496 Sum_probs=132.7
Q ss_pred CCCcCeeEEEeCCEEEEEccccCC-C--------CCceeeecC----------------CCCCCcceeeeEEEE------
Q psy8877 11 PRRVNHAAVLNDNKIFTFGGYCSG-E--------DYVKRRPMD----------------GEPPSYRDFHTANII------ 59 (180)
Q Consensus 11 ~~r~~~~~~~~~~~iy~~GG~~~~-~--------~~~~~~~~~----------------~~~p~~r~~~~~~~~------ 59 (180)
=||.+|++.+++++.|+|||..+. + ..++++.++ +.+|.+|..|.++++
T Consensus 135 CPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~ 214 (830)
T KOG4152|consen 135 CPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSK 214 (830)
T ss_pred CCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCC
Confidence 399999999999999999996432 1 234555554 788999999999888
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCC--------
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGL-------- 131 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~-------- 131 (180)
..++||+||.++ ..+.|+|.+|+++.+|.++...|..|.||.-|++..+++++|||||+--.
T Consensus 215 ~skmvvyGGM~G----------~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~ 284 (830)
T KOG4152|consen 215 KSKMVVYGGMSG----------CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVA 284 (830)
T ss_pred cceEEEEccccc----------ccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccc
Confidence 239999999988 67899999999999999999989999999999999999999999997311
Q ss_pred --cc--ceeceeeEEEcCCCcEEEeecCC----CCCCCCcceeEEEECCEEEEEcC
Q psy8877 132 --VE--EHYNDIYRYCTRRQEWARVIPHG----APPTKRRRQSCIIKGDTLIMFGG 179 (180)
Q Consensus 132 --~~--~~~~~~~~~d~~~~~W~~~~~~~----~~~~~r~~~~~~~~~~~i~~~GG 179 (180)
+. .+.+++-.+|+++..|+.+-... ..|.+|.+|+++.++.++|+-.|
T Consensus 285 ~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 285 THEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred cccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEec
Confidence 01 24567888999999999875432 36899999999999999999876
No 27
>KOG2437|consensus
Probab=99.68 E-value=3.7e-17 Score=121.73 Aligned_cols=168 Identities=21% Similarity=0.338 Sum_probs=128.7
Q ss_pred CCCCcCeeEEEeCC--EEEEEccccCCCCCceeeecC------------CCCCCcceeeeEEEECC--EEEEEcCCCCCC
Q psy8877 10 GPRRVNHAAVLNDN--KIFTFGGYCSGEDYVKRRPMD------------GEPPSYRDFHTANIIDG--RMYIWGGRGDES 73 (180)
Q Consensus 10 ~~~r~~~~~~~~~~--~iy~~GG~~~~~~~~~~~~~~------------~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~ 73 (180)
|-.|.+|.++...+ =||+.||+++.+...++|.|+ ...|.+|.+|.++..-. +||+.|-+-+..
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 45899999999875 599999999998888888877 56899999999988655 999999764421
Q ss_pred CcccCCCceecCcEEEEECCCCeEEeecC--C-CCCCCCceeeEEEEECCE--EEEEcCccCCcc-ceeceeeEEEcCCC
Q psy8877 74 SLYHSGSEVYCPDLVYLDLKYFTWIRPNT--T-GSVPVGRRSHSAFVYGDG--LYIFGGYNGLVE-EHYNDIYRYCTRRQ 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~~~~d~~~~~w~~~~~--~-~~~~~~r~~~~~~~~~~~--i~v~GG~~~~~~-~~~~~~~~~d~~~~ 147 (180)
.++....-+|+|+||.++++|.-+.. . ..-|...+.|.+++.+++ +||+||..-..+ .....++.||....
T Consensus 338 ---~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~ 414 (723)
T KOG2437|consen 338 ---VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ 414 (723)
T ss_pred ---cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCc
Confidence 12223455899999999999998842 1 235778899999999877 999999865422 46778999999999
Q ss_pred cEEEeecCC-------CCCCCCcceeEEEE--CCEEEEEcCC
Q psy8877 148 EWARVIPHG-------APPTKRRRQSCIIK--GDTLIMFGGS 180 (180)
Q Consensus 148 ~W~~~~~~~-------~~~~~r~~~~~~~~--~~~i~~~GG~ 180 (180)
.|..+...- +....|.+|++-.. ++.+|++||.
T Consensus 415 ~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq 456 (723)
T KOG2437|consen 415 TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQ 456 (723)
T ss_pred cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCc
Confidence 999876431 11245777776554 5579999873
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=9.2e-15 Score=104.97 Aligned_cols=167 Identities=22% Similarity=0.314 Sum_probs=122.5
Q ss_pred EeccCCCCCcCeeEEEeCCEEEEEccccCCCC--------CceeeecCCCCCCcceeeeEEEECCEEEEEcCCCCCCCcc
Q psy8877 5 VHLTGGPRRVNHAAVLNDNKIFTFGGYCSGED--------YVKRRPMDGEPPSYRDFHTANIIDGRMYIWGGRGDESSLY 76 (180)
Q Consensus 5 ~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~--------~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 76 (180)
.+|++|.+--.-+-+.+++.+||-=|+.+... .+.|.....-+..+|.....++++++||+|||......
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-- 106 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS-- 106 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC--
Confidence 45677765555577778889999877433211 13344444556678888899999999999999865321
Q ss_pred cCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECC-EEEEEcCccCCc-----------------------
Q psy8877 77 HSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGD-GLYIFGGYNGLV----------------------- 132 (180)
Q Consensus 77 ~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~-~i~v~GG~~~~~----------------------- 132 (180)
...+..+++|+||+.+++|.++.+ ..|....+++++..++ +++++||.....
T Consensus 107 --~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~ 182 (381)
T COG3055 107 --SSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA 182 (381)
T ss_pred --CCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence 335778999999999999999986 5677788888888877 899999975320
Q ss_pred ---------cceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcC
Q psy8877 133 ---------EEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGG 179 (180)
Q Consensus 133 ---------~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG 179 (180)
--+...++.|+|.+++|+.+... +-.++++++++.-+|.+.++-|
T Consensus 183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInG 236 (381)
T COG3055 183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAVVIKGNKLTLING 236 (381)
T ss_pred HHhCCCHHHhcccccccccccccchhhhcCcC--cccCccCcceeecCCeEEEEcc
Confidence 01345799999999999988754 3466777666666777888766
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.48 E-value=1.9e-13 Score=73.10 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=43.8
Q ss_pred cceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCc
Q psy8877 50 YRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGR 110 (180)
Q Consensus 50 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r 110 (180)
||..|++++++++|||+||.... ....+++++||+++++|++++. ||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--------~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--------GKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--------CCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 68899999999999999998772 3667999999999999999964 88776
No 30
>KOG2437|consensus
Probab=99.42 E-value=2.5e-13 Score=101.63 Aligned_cols=126 Identities=20% Similarity=0.330 Sum_probs=102.8
Q ss_pred CCCCcceeeeEEEECC--EEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECC--E
Q psy8877 46 EPPSYRDFHTANIIDG--RMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGD--G 121 (180)
Q Consensus 46 ~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~--~ 121 (180)
..|..|.+|.++.... .||+.||+++ -+-+.|+|.|+...+.|+.+..-+..|..|.+|.++..-. +
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWdG---------~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~K 326 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWDG---------TQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRK 326 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCccc---------chhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhH
Confidence 5688899999988754 9999999988 3557999999999999999986667899999999987654 8
Q ss_pred EEEEcCccCCc----cceeceeeEEEcCCCcEEEeecCC---CCCCCCcceeEEEECCE--EEEEcCC
Q psy8877 122 LYIFGGYNGLV----EEHYNDIYRYCTRRQEWARVIPHG---APPTKRRRQSCIIKGDT--LIMFGGS 180 (180)
Q Consensus 122 i~v~GG~~~~~----~~~~~~~~~~d~~~~~W~~~~~~~---~~~~~r~~~~~~~~~~~--i~~~GG~ 180 (180)
+|+.|-+-..+ .....|+|+||.++++|..+.-.. --|..-+.|.+++.+++ ||++||.
T Consensus 327 LYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 327 LYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred HhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 99999654321 245679999999999999987543 24667788899888776 9999983
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.40 E-value=1e-12 Score=70.19 Aligned_cols=47 Identities=36% Similarity=0.692 Sum_probs=42.2
Q ss_pred CceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCC
Q psy8877 109 GRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHG 156 (180)
Q Consensus 109 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~ 156 (180)
+|..|+++.++++|||+||.... ....+++++||+++++|++++++.
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCC
Confidence 58899999999999999999885 467889999999999999998753
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.36 E-value=1.1e-11 Score=89.32 Aligned_cols=119 Identities=27% Similarity=0.428 Sum_probs=95.2
Q ss_pred CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCC--CeEEeecCCCCCCCCceeeEEEEECCEE
Q psy8877 45 GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKY--FTWIRPNTTGSVPVGRRSHSAFVYGDGL 122 (180)
Q Consensus 45 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~--~~w~~~~~~~~~~~~r~~~~~~~~~~~i 122 (180)
+.+|.+-.+-+.+.+++.+||-=|... ...+..|++. ..|+++.. -+..+|-...++.++++|
T Consensus 31 PdlPvg~KnG~Ga~ig~~~YVGLGs~G-------------~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kL 95 (381)
T COG3055 31 PDLPVGFKNGAGALIGDTVYVGLGSAG-------------TAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKL 95 (381)
T ss_pred CCCCccccccccceecceEEEEeccCC-------------ccceehhhhcCCCCceEccc--CCCcccccchheeeCCeE
Confidence 667888777788889999999877544 4567777664 58999975 344578888899999999
Q ss_pred EEEcCccCCc---cceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECC-EEEEEcCC
Q psy8877 123 YIFGGYNGLV---EEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGD-TLIMFGGS 180 (180)
Q Consensus 123 ~v~GG~~~~~---~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~-~i~~~GG~ 180 (180)
|+|||..... ....+++++||+.+++|.++.... |....+++++.+++ +|+++||+
T Consensus 96 yvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s--P~gl~G~~~~~~~~~~i~f~GGv 155 (381)
T COG3055 96 YVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS--PTGLVGASTFSLNGTKIYFFGGV 155 (381)
T ss_pred EEeeccccCCCCCceEeeeeEEecCCCChhheecccc--ccccccceeEecCCceEEEEccc
Confidence 9999986542 256889999999999999998873 56666777888877 99999995
No 33
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.32 E-value=1e-11 Score=66.00 Aligned_cols=49 Identities=33% Similarity=0.615 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEE
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVY 118 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~ 118 (180)
+++||||||.... ....++++|+||+++++|+++ +++|.+|.+|+++.+
T Consensus 1 g~~~~vfGG~~~~-------~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDD-------GGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCC-------CCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 5789999999831 146789999999999999998 468999999999863
No 34
>PLN02772 guanylate kinase
Probab=99.31 E-value=2.7e-11 Score=89.97 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=75.3
Q ss_pred CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEE-CCEEE
Q psy8877 45 GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVY-GDGLY 123 (180)
Q Consensus 45 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~-~~~i~ 123 (180)
+-...++.+++++.+++++|||||..+. ....+.+++||..+.+|..+...|..|.+|.+|+++.+ +++|+
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~--------~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ril 90 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEG--------NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRIL 90 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCC--------ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEE
Confidence 3456689999999999999999998772 23578999999999999999988999999999999988 68899
Q ss_pred EEcCccCCccceeceeeEEEcCCC
Q psy8877 124 IFGGYNGLVEEHYNDIYRYCTRRQ 147 (180)
Q Consensus 124 v~GG~~~~~~~~~~~~~~~d~~~~ 147 (180)
|+++.... -+++|.+...|.
T Consensus 91 v~~~~~~~----~~~~w~l~~~t~ 110 (398)
T PLN02772 91 VIKKGSAP----DDSIWFLEVDTP 110 (398)
T ss_pred EEeCCCCC----ccceEEEEcCCH
Confidence 99865543 257777766554
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.29 E-value=1.3e-11 Score=65.55 Aligned_cols=47 Identities=32% Similarity=0.641 Sum_probs=40.9
Q ss_pred CceeeEEEEECCEEEEEcCc-cCCccceeceeeEEEcCCCcEEEeecC
Q psy8877 109 GRRSHSAFVYGDGLYIFGGY-NGLVEEHYNDIYRYCTRRQEWARVIPH 155 (180)
Q Consensus 109 ~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~d~~~~~W~~~~~~ 155 (180)
+|++|+++.++++|||+||+ ........++++.||+++++|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58999999999999999999 333257889999999999999998875
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.28 E-value=1.5e-11 Score=64.85 Aligned_cols=46 Identities=30% Similarity=0.669 Sum_probs=41.5
Q ss_pred CceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecC
Q psy8877 109 GRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPH 155 (180)
Q Consensus 109 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 155 (180)
||.+|+++.++++|||+||.... ....+++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN-NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST-SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc-CceeeeEEEEeCCCCEEEEcCCC
Confidence 58899999999999999999884 47889999999999999999875
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.27 E-value=2.4e-11 Score=64.56 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=41.3
Q ss_pred CCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEE
Q psy8877 119 GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIK 170 (180)
Q Consensus 119 ~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~ 170 (180)
+++|||+||.........+++|+||+.+++|+++.. .|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~---~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGD---LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCC---CCCCccceEEEEC
Confidence 478999999984335788999999999999999943 6789999998763
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.27 E-value=1.2e-11 Score=65.81 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=31.2
Q ss_pred CceeeEEEEE-CCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecC
Q psy8877 109 GRRSHSAFVY-GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPH 155 (180)
Q Consensus 109 ~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 155 (180)
||++|+++.+ +++|||+||.... ....+++|+||+++++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCC
Confidence 6899999988 5899999999876 36899999999999999999553
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.23 E-value=1.7e-11 Score=64.63 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=39.4
Q ss_pred cceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecC
Q psy8877 50 YRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNT 102 (180)
Q Consensus 50 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~ 102 (180)
||.+|++++++++||++||... .....+++++||+++++|++++.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~--------~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG--------NNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES--------TSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecc--------cCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999977 24678999999999999999863
No 40
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.21 E-value=1.4e-09 Score=76.53 Aligned_cols=132 Identities=20% Similarity=0.270 Sum_probs=92.0
Q ss_pred CCCCCcceeeeEEEE----CCEEEEEcCCCC-----CCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEE
Q psy8877 45 GEPPSYRDFHTANII----DGRMYIWGGRGD-----ESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSA 115 (180)
Q Consensus 45 ~~~p~~r~~~~~~~~----~~~lyv~GG~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~ 115 (180)
+..|.+|+.|++.++ +....+|||++. ..+.++++.-.+.+.++.+|++..=.+.... .++......|.+
T Consensus 82 GdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvs 160 (337)
T PF03089_consen 82 GDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVS 160 (337)
T ss_pred CCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEE
Confidence 889999999998776 348999999974 3467788888889999999999887665532 346678889999
Q ss_pred EEECCEEEEEcCccCCccceeceeeEEEcCCC---cEEEeecCCCCCCCCcceeEEEE---CCEEEEEcCC
Q psy8877 116 FVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ---EWARVIPHGAPPTKRRRQSCIIK---GDTLIMFGGS 180 (180)
Q Consensus 116 ~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~---~W~~~~~~~~~~~~r~~~~~~~~---~~~i~~~GG~ 180 (180)
..-++.+|++||+.-..+.....++++..+-- -+-.+.. .+......++++. .+..+|+||+
T Consensus 161 lar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY 228 (337)
T PF03089_consen 161 LARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGY 228 (337)
T ss_pred EecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEecc
Confidence 99999999999998665555566776653211 1111111 1223333333332 4678889985
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.19 E-value=1.1e-10 Score=62.02 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=39.0
Q ss_pred cceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecC
Q psy8877 50 YRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNT 102 (180)
Q Consensus 50 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~ 102 (180)
+|..|++++++++|||+||... .+.....++++.||+++++|++++.
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~------~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGT------DNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCccc------CCCCcccceeEEEECCCCEEeecCC
Confidence 6889999999999999999911 0124677999999999999999864
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.17 E-value=6.7e-11 Score=62.86 Aligned_cols=44 Identities=34% Similarity=0.497 Sum_probs=29.9
Q ss_pred cceeeeEEEE-CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeec
Q psy8877 50 YRDFHTANII-DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPN 101 (180)
Q Consensus 50 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~ 101 (180)
||.+|+++.+ +++||||||.... ....+++++||+++++|+++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~--------~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS--------GSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE---------TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCC--------CcccCCEEEEECCCCEEEECC
Confidence 6899999998 5899999999772 367899999999999999984
No 43
>PLN02772 guanylate kinase
Probab=99.15 E-value=3.3e-10 Score=84.31 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=64.4
Q ss_pred CCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEE-CCEEEEEcC
Q psy8877 106 VPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIK-GDTLIMFGG 179 (180)
Q Consensus 106 ~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~-~~~i~~~GG 179 (180)
-..++.+|+++.+++++||+||..+. ....+.++.||..+.+|......+.+|.+|.+|+++++ +++|+|+++
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~-~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEG-NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCC-ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeC
Confidence 44588899999999999999998774 34678999999999999999999989999999999998 579999974
No 44
>PF13854 Kelch_5: Kelch motif
Probab=99.10 E-value=3.9e-10 Score=57.68 Aligned_cols=41 Identities=41% Similarity=0.707 Sum_probs=35.8
Q ss_pred CCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCC
Q psy8877 106 VPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRR 146 (180)
Q Consensus 106 ~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~ 146 (180)
+|.+|+.|+++.++++|||+||.....+...+++|++|+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999999999999852257899999999876
No 45
>smart00612 Kelch Kelch domain.
Probab=99.04 E-value=6.2e-10 Score=58.41 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=39.2
Q ss_pred EEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECC
Q psy8877 62 RMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGD 120 (180)
Q Consensus 62 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~ 120 (180)
+||++||... ....+++++||+.+++|+.++ .++.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG---------GQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC---------CceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999865 245689999999999999986 4899999999887764
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.99 E-value=2.3e-09 Score=54.83 Aligned_cols=41 Identities=37% Similarity=0.575 Sum_probs=34.9
Q ss_pred CCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCC
Q psy8877 47 PPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKY 94 (180)
Q Consensus 47 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~ 94 (180)
.|.+|..|+++.++++||++||.... .....+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~-------~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGN-------NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCC-------CCCEECcEEEEECCC
Confidence 48899999999999999999999841 146679999999876
No 47
>smart00612 Kelch Kelch domain.
Probab=98.88 E-value=4.9e-09 Score=54.92 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=39.0
Q ss_pred EEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECC
Q psy8877 121 GLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGD 172 (180)
Q Consensus 121 ~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~ 172 (180)
+||++||.... ....++++||+.+++|+.++++ +.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG--QRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC--ceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 48999998653 5678999999999999998875 57899998887764
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.72 E-value=3.3e-07 Score=64.80 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCCCcccCCCceecCcEEEEECCCCe--------EEeecCCCCCCCCceeeEEEEEC--C--EEEEEcCcc
Q psy8877 62 RMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFT--------WIRPNTTGSVPVGRRSHSAFVYG--D--GLYIFGGYN 129 (180)
Q Consensus 62 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------w~~~~~~~~~~~~r~~~~~~~~~--~--~i~v~GG~~ 129 (180)
.-+|.||++.. .+..+.+|....++.. ..+.+..|+.|.+||+|++-++. + ..++|||.+
T Consensus 40 ~YlIHGGrTPN--------NElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRS 111 (337)
T PF03089_consen 40 QYLIHGGRTPN--------NELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRS 111 (337)
T ss_pred eEEecCCcCCC--------cccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcc
Confidence 55567888774 4667888888766443 33334458899999999997763 3 378899986
Q ss_pred CCc---------c---ceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 130 GLV---------E---EHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 130 ~~~---------~---~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
... + .....++.+|++-..++.-..+ +......+|-+..-+|.+|++||+
T Consensus 112 Y~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 112 YMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGH 173 (337)
T ss_pred cCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccE
Confidence 431 1 1234588889888887765443 244566677777779999999995
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.09 E-value=6.8e-05 Score=53.07 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=60.4
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEE-EECCEEEEEcCccCCccceeceeeEEEcCC----CcEEEeecCCCCC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAF-VYGDGLYIFGGYNGLVEEHYNDIYRYCTRR----QEWARVIPHGAPP 159 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~----~~W~~~~~~~~~~ 159 (180)
.....||+.+++++.+.. ...-++.+.+ .-+|++++.||..+. ...+-.|++.+ ..|.+.... +.
T Consensus 46 a~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~~~--m~ 115 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESPND--MQ 115 (243)
T ss_pred EEEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECccc--cc
Confidence 445688999999999854 2232333333 347899999998653 23456677654 678887653 34
Q ss_pred CCCcceeEEEE-CCEEEEEcCC
Q psy8877 160 TKRRRQSCIIK-GDTLIMFGGS 180 (180)
Q Consensus 160 ~~r~~~~~~~~-~~~i~~~GG~ 180 (180)
.+|-+.++..+ +++++|+||.
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGS 137 (243)
T ss_pred CCCccccceECCCCCEEEEeCc
Confidence 78999888877 7899999994
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.74 E-value=0.0011 Score=47.09 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCC----CeEEeecCCCCCCCCceeeEEEEE-CCEEEEEcCccCC
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKY----FTWIRPNTTGSVPVGRRSHSAFVY-GDGLYIFGGYNGL 131 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~----~~w~~~~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~ 131 (180)
++.+++.||..+- ...+-.|++.+ ..|.+... .|..+|.+.++..+ +++++|+||....
T Consensus 77 dG~ll~tGG~~~G-----------~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~ 140 (243)
T PF07250_consen 77 DGRLLQTGGDNDG-----------NKAIRIFTPCTSDGTCDWTESPN--DMQSGRWYPTATTLPDGRVLIVGGSNNP 140 (243)
T ss_pred CCCEEEeCCCCcc-----------ccceEEEecCCCCCCCCceECcc--cccCCCccccceECCCCCEEEEeCcCCC
Confidence 6799999997551 24455677665 67888753 48899999998876 7899999998754
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.90 E-value=0.021 Score=40.32 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=54.7
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEE-eecCCCCCCCCc
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWAR-VIPHGAPPTKRR 163 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~~~~r~ 163 (180)
..+++|+..+++|+.+... .+........+.++|.+|-+.-.... .....+.+||+.+++|.. ++.+........
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~ 145 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIPLPCGNSDSVD 145 (230)
T ss_pred ccEEEEEeCCCCccccccC--CCCccccCCeEEECCEEEEEEEECCC--CCcEEEEEEEcccceEeeeeecCcccccccc
Confidence 5788999999999998631 22111122267789998877533221 111269999999999995 654321111122
Q ss_pred ceeEEEECCEEEEEc
Q psy8877 164 RQSCIIKGDTLIMFG 178 (180)
Q Consensus 164 ~~~~~~~~~~i~~~G 178 (180)
....+.++|++.++.
T Consensus 146 ~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 146 YLSLINYKGKLAVLK 160 (230)
T ss_pred ceEEEEECCEEEEEE
Confidence 345566778877653
No 52
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.21 E-value=0.12 Score=37.77 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=55.2
Q ss_pred ecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEE-CCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecC--CCCC
Q psy8877 83 YCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVY-GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPH--GAPP 159 (180)
Q Consensus 83 ~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~--~~~~ 159 (180)
.+..+-.||..+.+|.++-. . -.... ..+... ++++|+.|-.+.. +.....+-.||.++.+|+.+... ...|
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~--~-i~G~V-~~l~~~~~~~Llv~G~ft~~-~~~~~~la~yd~~~~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN--G-ISGTV-TDLQWASNNQLLVGGNFTLN-GTNSSNLATYDFKNQTWSSLGGGSSNSIP 88 (281)
T ss_pred CCCEEEEEECCCCEeecCCC--C-ceEEE-EEEEEecCCEEEEEEeeEEC-CCCceeEEEEecCCCeeeecCCcccccCC
Confidence 35889999999999999853 1 11211 222233 5677777654433 22456789999999999998873 2344
Q ss_pred CCCcceeEEEEC-CEEEEEcC
Q psy8877 160 TKRRRQSCIIKG-DTLIMFGG 179 (180)
Q Consensus 160 ~~r~~~~~~~~~-~~i~~~GG 179 (180)
.+-........+ +++++.|.
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGR 109 (281)
T ss_pred CcEEEEEeeccCCceEEEece
Confidence 443222222223 35666653
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.44 E-value=0.8 Score=34.58 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=63.7
Q ss_pred EEEeCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEE
Q psy8877 18 AVLNDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLV 88 (180)
Q Consensus 18 ~~~~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 88 (180)
+++.+++|+.++.... .-.|| +.++.+...-.+..++++||++........... .......+.
T Consensus 72 ~al~gskIv~~d~~~~------t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~--~~~~~FE~l 143 (342)
T PF07893_consen 72 FALHGSKIVAVDQSGR------TLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGR--PDFPCFEAL 143 (342)
T ss_pred EEecCCeEEEEcCCCC------eEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccC--ccceeEEEe
Confidence 3445889999976421 22333 445555666677778999999987644211000 000012222
Q ss_pred EEEC--------CCCeEEeecCCCCCCCCce-------eeEEEEE-CCEEEEE-cCccCCccceeceeeEEEcCCCcEEE
Q psy8877 89 YLDL--------KYFTWIRPNTTGSVPVGRR-------SHSAFVY-GDGLYIF-GGYNGLVEEHYNDIYRYCTRRQEWAR 151 (180)
Q Consensus 89 ~~d~--------~~~~w~~~~~~~~~~~~r~-------~~~~~~~-~~~i~v~-GG~~~~~~~~~~~~~~~d~~~~~W~~ 151 (180)
.|+. ..=.|..++. +|..+. -.+-+++ +..|+|. -+.. ...+.||+.+.+|++
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRK 213 (342)
T ss_pred ccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceee
Confidence 3331 1225777653 332222 2233344 4557772 1111 257899999999999
Q ss_pred eecC
Q psy8877 152 VIPH 155 (180)
Q Consensus 152 ~~~~ 155 (180)
+..-
T Consensus 214 ~GdW 217 (342)
T PF07893_consen 214 HGDW 217 (342)
T ss_pred ccce
Confidence 8543
No 54
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.09 E-value=1.4 Score=27.97 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=53.7
Q ss_pred EECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceec
Q psy8877 58 IIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYN 137 (180)
Q Consensus 58 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 137 (180)
.+|+-+|-..-... .....+..||..+.+|+.++.-............+.++|+|-++.-.... ....-
T Consensus 3 cinGvly~~a~~~~----------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~~~~~ 71 (129)
T PF08268_consen 3 CINGVLYWLAWSED----------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG-EPDSI 71 (129)
T ss_pred EECcEEEeEEEECC----------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC-CcceE
Confidence 45676766654311 33477999999999999986410122334455666778998776433322 11235
Q ss_pred eeeEE-EcCCCcEEEeec
Q psy8877 138 DIYRY-CTRRQEWARVIP 154 (180)
Q Consensus 138 ~~~~~-d~~~~~W~~~~~ 154 (180)
++|.+ |..+.+|++...
T Consensus 72 ~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 72 DIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEEeeccccceEEEEEE
Confidence 78887 466789998755
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.17 E-value=3 Score=29.35 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=51.1
Q ss_pred EEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEe-ecCCCCCCCCc----eeeEEEEECCEEEEEcCccC
Q psy8877 56 ANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIR-PNTTGSVPVGR----RSHSAFVYGDGLYIFGGYNG 130 (180)
Q Consensus 56 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-~~~~~~~~~~r----~~~~~~~~~~~i~v~GG~~~ 130 (180)
.+.+++.||-+.-.... .....|..||+.+.+|.. ++ +|..+ .....+.++|++.++.....
T Consensus 98 ~v~~~G~lyw~~~~~~~---------~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 98 GVCINGVLYYLAYTLKT---------NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred eEEECCEEEEEEEECCC---------CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecCC
Confidence 66778888888633220 111269999999999995 53 33322 12345567888887754332
Q ss_pred CccceeceeeEEE-cCCCcEEEeecC
Q psy8877 131 LVEEHYNDIYRYC-TRRQEWARVIPH 155 (180)
Q Consensus 131 ~~~~~~~~~~~~d-~~~~~W~~~~~~ 155 (180)
. ..-++|+.+ -...+|++.-..
T Consensus 165 ~---~~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 165 T---NNFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred C---CcEEEEEECCCCCCceeEEEEE
Confidence 1 124688775 446679986554
No 56
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.98 E-value=1.6 Score=27.70 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=39.2
Q ss_pred EEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEE
Q psy8877 116 FVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMF 177 (180)
Q Consensus 116 ~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 177 (180)
+.++|.+|-..-. . ......+.+||..+++|+.++.+............+.++|+|-++
T Consensus 2 icinGvly~~a~~-~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v 60 (129)
T PF08268_consen 2 ICINGVLYWLAWS-E--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALV 60 (129)
T ss_pred EEECcEEEeEEEE-C--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEE
Confidence 3567777665443 1 134567999999999999988752122445555667778887664
No 57
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.39 E-value=4.2 Score=29.49 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCcCeeEEEeCCEEEEEccccCCCCCce---eeecC--------------CCCCCcceeeeEEEECCEEEEEcCCCCCCC
Q psy8877 12 RRVNHAAVLNDNKIFTFGGYCSGEDYVK---RRPMD--------------GEPPSYRDFHTANIIDGRMYIWGGRGDESS 74 (180)
Q Consensus 12 ~r~~~~~~~~~~~iy~~GG~~~~~~~~~---~~~~~--------------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 74 (180)
.-.-|+.|.+++.-|.+|=-.+.-...+ +..-+ .+.....+..++-.+++.||+.--.+.+
T Consensus 135 vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~-- 212 (367)
T PF12217_consen 135 VTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLP-- 212 (367)
T ss_dssp -SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-T--
T ss_pred eeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCC--
Confidence 4466999999999999873211111111 11111 2222233444555679999988533321
Q ss_pred cccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceee---EEEEECCEEEEEcCccCCc--------cc-----e---
Q psy8877 75 LYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSH---SAFVYGDGLYIFGGYNGLV--------EE-----H--- 135 (180)
Q Consensus 75 ~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~---~~~~~~~~i~v~GG~~~~~--------~~-----~--- 135 (180)
...-+.+.+-+.....|..+.. |.. ..| .-+.+++.||+||--.... +. +
T Consensus 213 ------~~~GS~L~rs~d~G~~w~slrf----p~n-vHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF 281 (367)
T PF12217_consen 213 ------TNPGSSLHRSDDNGQNWSSLRF----PNN-VHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTF 281 (367)
T ss_dssp ------TS---EEEEESSTTSS-EEEE-----TT----SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEE
T ss_pred ------CCCcceeeeecccCCchhhccc----ccc-ccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceE
Confidence 1333667777778889999853 322 222 2356799999998432110 00 0
Q ss_pred --eceeeEEEcCCCcEEEeecCC---CCC-CCCcceeEEEECCE-EEEEcC
Q psy8877 136 --YNDIYRYCTRRQEWARVIPHG---APP-TKRRRQSCIIKGDT-LIMFGG 179 (180)
Q Consensus 136 --~~~~~~~d~~~~~W~~~~~~~---~~~-~~r~~~~~~~~~~~-i~~~GG 179 (180)
...+-.+.+++-+|..+...- ..- ..-...++++.++- -|+|||
T Consensus 282 ~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGg 332 (367)
T PF12217_consen 282 MLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGG 332 (367)
T ss_dssp EEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEE
T ss_pred EEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecC
Confidence 111223356777888876542 111 12222234444664 567776
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.00 E-value=6.9 Score=29.64 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=38.2
Q ss_pred ECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccC
Q psy8877 59 IDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNG 130 (180)
Q Consensus 59 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 130 (180)
.+++|+..... ....+||.++..-...+ .++.+.....++.++++||++.....
T Consensus 75 ~gskIv~~d~~---------------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~ 128 (342)
T PF07893_consen 75 HGSKIVAVDQS---------------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPF 128 (342)
T ss_pred cCCeEEEEcCC---------------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCc
Confidence 47788888543 33678999999877654 35555555667778999999976644
No 59
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=88.19 E-value=8.9 Score=28.54 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=54.1
Q ss_pred eeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCe-EEeecCCCCCCCCceeeEEEEECCEEEEEcCccCC
Q psy8877 53 FHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFT-WIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGL 131 (180)
Q Consensus 53 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~-w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~ 131 (180)
-.+++.++++|.+.-| +.+..|++...+ +.+... ...+-+..+....++.|++---..
T Consensus 91 V~ai~~~~~~lv~~~g----------------~~l~v~~l~~~~~l~~~~~---~~~~~~i~sl~~~~~~I~vgD~~~-- 149 (321)
T PF03178_consen 91 VTAICSFNGRLVVAVG----------------NKLYVYDLDNSKTLLKKAF---YDSPFYITSLSVFKNYILVGDAMK-- 149 (321)
T ss_dssp EEEEEEETTEEEEEET----------------TEEEEEEEETTSSEEEEEE---E-BSSSEEEEEEETTEEEEEESSS--
T ss_pred ceEhhhhCCEEEEeec----------------CEEEEEEccCcccchhhhe---ecceEEEEEEeccccEEEEEEccc--
Confidence 3455666777555543 457777777777 777643 333335555666778665532221
Q ss_pred ccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEE-CCEEEE
Q psy8877 132 VEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIK-GDTLIM 176 (180)
Q Consensus 132 ~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~-~~~i~~ 176 (180)
.-.+..|+.+..+...++... .++...++..+ ++..++
T Consensus 150 ----sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 150 ----SVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp ----SEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEE
T ss_pred ----CEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEE
Confidence 124667787777788877643 45665566556 543333
No 60
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.66 E-value=3.3 Score=30.35 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=40.9
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPH 155 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 155 (180)
..+++||+.+.+|.+.+.-+. .+|-...-+--.+++++. +...+.+-+||+++.+.+.++..
T Consensus 254 g~l~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~s-------ea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLS-------EADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ceeeEeCcccccceeeeCCCC--CCCcceeeeccCCcEEee-------ccccCceeecCcccceEEEecCC
Confidence 568999999999999853121 233332222224667663 12345788999999999998875
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.38 E-value=15 Score=28.27 Aligned_cols=107 Identities=10% Similarity=0.052 Sum_probs=57.3
Q ss_pred eEEEeCCEEEEEcccc-----CCCCCceeeecCCCC--------CCcceeeeEEEECCEEEEEcCCCCCCCcccCCCcee
Q psy8877 17 AAVLNDNKIFTFGGYC-----SGEDYVKRRPMDGEP--------PSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVY 83 (180)
Q Consensus 17 ~~~~~~~~iy~~GG~~-----~~~~~~~~~~~~~~~--------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 83 (180)
+.++.+++||+..... ....-...|..+-.. ..++.....++.++.+|+...
T Consensus 64 sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------------- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------------- 128 (394)
T ss_pred ccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---------------
Confidence 4567889999986521 111113344444111 011222334566888887432
Q ss_pred cCcEEEEECCCC--eEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCC--cEEEe
Q psy8877 84 CPDLVYLDLKYF--TWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ--EWARV 152 (180)
Q Consensus 84 ~~~~~~~d~~~~--~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~--~W~~~ 152 (180)
...++.+|.++. .|+.-. +.. ...+.++.++.+|+..+ ...++.+|+++. .|+.-
T Consensus 129 ~g~l~ald~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKWTVN 187 (394)
T ss_pred CCEEEEEECCCCCCcccccC-----CCc-eecCCEEECCEEEEECC--------CCEEEEEEccCCCEeeeec
Confidence 145888998765 587632 111 12223455777777422 125888888765 46653
No 62
>KOG0649|consensus
Probab=84.85 E-value=12 Score=26.94 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=49.3
Q ss_pred CCCCcceeeeEEE-ECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEEC--CEE
Q psy8877 46 EPPSYRDFHTANI-IDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYG--DGL 122 (180)
Q Consensus 46 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~--~~i 122 (180)
..+.|-.+..... -.+.|+..||. ..+|..|+++.+.++.- ...--|-|+.+.-+ +.|
T Consensus 111 ~~evPeINam~ldP~enSi~~AgGD---------------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 111 AVEVPEINAMWLDPSENSILFAGGD---------------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred cccCCccceeEeccCCCcEEEecCC---------------eEEEEEEecCCEEEEEE----cCCcceeeeeeecccCcce
Confidence 3444445443333 46788888874 34789999999988863 22334677777643 333
Q ss_pred EEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 123 YIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 123 ~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
+.|+- +. ++-.+|.++.+-.++-.
T Consensus 172 -lsG~E-DG------tvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 172 -LSGAE-DG------TVRVWDTKTQKHVSMIE 195 (325)
T ss_pred -eecCC-Cc------cEEEEeccccceeEEec
Confidence 33433 32 46677777777766543
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.20 E-value=15 Score=26.72 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=58.2
Q ss_pred eeeeEEE-ECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccC
Q psy8877 52 DFHTANI-IDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNG 130 (180)
Q Consensus 52 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 130 (180)
.-..... .++.||.--|..+ .+.+.++|+++.+-.+.. .+|..-++=..+.+++++|..-
T Consensus 46 FTQGL~~~~~g~LyESTG~yG------------~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLT---- 106 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG------------QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLT---- 106 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT------------EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEE----
T ss_pred cCccEEecCCCEEEEeCCCCC------------cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEE----
Confidence 3345555 5779998888765 277889999998765433 3666667778888999999873
Q ss_pred CccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEE
Q psy8877 131 LVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMF 177 (180)
Q Consensus 131 ~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 177 (180)
......++||+++. +.+..- +-+..+..++.-+..+++-
T Consensus 107 ---Wk~~~~f~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~S 145 (264)
T PF05096_consen 107 ---WKEGTGFVYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMS 145 (264)
T ss_dssp ---SSSSEEEEEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE
T ss_pred ---ecCCeEEEEccccc--eEEEEE---ecCCcceEEEcCCCEEEEE
Confidence 12335778887653 333221 1233455555434444443
No 64
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=82.88 E-value=13 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=14.7
Q ss_pred CCEEEEEcCccCCccceeceeeEEEcCCCcE
Q psy8877 119 GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEW 149 (180)
Q Consensus 119 ~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W 149 (180)
++++|+|-|. ..|+||...++.
T Consensus 110 ~~~~yfFkg~---------~y~ry~~~~~~v 131 (194)
T cd00094 110 NGKTYFFKGD---------KYWRYDEKTQKM 131 (194)
T ss_pred CCEEEEEeCC---------EEEEEeCCCccc
Confidence 5789999663 467777655443
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.65 E-value=20 Score=26.40 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCC--CCCCCCceeeEEEEEC-CEEEEEcCccCCcccee
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTT--GSVPVGRRSHSAFVYG-DGLYIFGGYNGLVEEHY 136 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~--~~~~~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~ 136 (180)
+++||+.|-.+.. ......+-+||.++.+|..+... ...|.+...-.....+ +.+++.|..... .
T Consensus 47 ~~~Llv~G~ft~~--------~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g----~ 114 (281)
T PF12768_consen 47 NNQLLVGGNFTLN--------GTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG----S 114 (281)
T ss_pred CCEEEEEEeeEEC--------CCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC----C
Confidence 6688888765442 11246688999999999998651 2355554332222223 457777765221 2
Q ss_pred ceeeEEEcCCCcEEEeec
Q psy8877 137 NDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 137 ~~~~~~d~~~~~W~~~~~ 154 (180)
.-+.+| +..+|..+..
T Consensus 115 ~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 115 TFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ceEEEE--cCCceEeccc
Confidence 345556 4678888766
No 66
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.50 E-value=26 Score=26.94 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=27.2
Q ss_pred CcEEEEECCCC--eEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCc
Q psy8877 85 PDLVYLDLKYF--TWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQE 148 (180)
Q Consensus 85 ~~~~~~d~~~~--~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~ 148 (180)
..++.+|..+. .|+.-.. ..+...+.+..++++|+... ...++.+|+++.+
T Consensus 304 g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~~--------~G~l~~ld~~tG~ 356 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGDS--------EGYLHWINREDGR 356 (394)
T ss_pred CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEeC--------CCEEEEEECCCCC
Confidence 44677777655 4654211 11222234456788876421 1257778877664
No 67
>KOG2055|consensus
Probab=73.79 E-value=43 Score=26.53 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=42.5
Q ss_pred CEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCE-EEEEcCccCCccceecee
Q psy8877 61 GRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDG-LYIFGGYNGLVEEHYNDI 139 (180)
Q Consensus 61 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~ 139 (180)
-.+.+.+|.+. .-.++..|=+++. .+....-...|... +.+.-+|. ..+++|... -+
T Consensus 225 ~plllvaG~d~------------~lrifqvDGk~N~--~lqS~~l~~fPi~~-a~f~p~G~~~i~~s~rrk-------y~ 282 (514)
T KOG2055|consen 225 APLLLVAGLDG------------TLRIFQVDGKVNP--KLQSIHLEKFPIQK-AEFAPNGHSVIFTSGRRK-------YL 282 (514)
T ss_pred CceEEEecCCC------------cEEEEEecCccCh--hheeeeeccCccce-eeecCCCceEEEecccce-------EE
Confidence 37888888766 2456666666554 22110001122222 12222444 666666543 48
Q ss_pred eEEEcCCCcEEEeecCC
Q psy8877 140 YRYCTRRQEWARVIPHG 156 (180)
Q Consensus 140 ~~~d~~~~~W~~~~~~~ 156 (180)
+.||+.+.+-+++..+.
T Consensus 283 ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPY 299 (514)
T ss_pred EEeeccccccccccCCC
Confidence 99999999999988775
No 68
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=72.59 E-value=31 Score=24.40 Aligned_cols=56 Identities=9% Similarity=-0.071 Sum_probs=37.3
Q ss_pred cCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEE--CCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecC
Q psy8877 84 CPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVY--GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPH 155 (180)
Q Consensus 84 ~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 155 (180)
...++++++.+.+-..+.. +. -..++.. ++++|+... ..+..+|+.+.+++.+...
T Consensus 21 ~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS---------GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET---------TCEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc---------CceEEEecCCCcEEEEeec
Confidence 3679999999998776643 22 2223333 677877632 2455669999999888775
No 69
>PRK13684 Ycf48-like protein; Provisional
Probab=72.39 E-value=39 Score=25.49 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=37.1
Q ss_pred EEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEE-EcCCCcEEEeecCCCCCCCCcce
Q psy8877 87 LVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRY-CTRRQEWARVIPHGAPPTKRRRQ 165 (180)
Q Consensus 87 ~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~-d~~~~~W~~~~~~~~~~~~r~~~ 165 (180)
+++=+-.-.+|+++.+ .. .-..+.+...++..++..|... .++.- |....+|+.+... ..+...
T Consensus 154 i~~S~DgG~tW~~~~~--~~--~g~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg~tW~~~~~~----~~~~l~ 218 (334)
T PRK13684 154 IYRTTDGGKNWEALVE--DA--AGVVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQTAWTPHQRN----SSRRLQ 218 (334)
T ss_pred EEEECCCCCCceeCcC--CC--cceEEEEEECCCCeEEEEeCCc-------eEEEEcCCCCCeEEEeeCC----Ccccce
Confidence 5554445679999854 11 1123334444444444433322 23322 3344679988653 223333
Q ss_pred eEEEE-CCEEEEEc
Q psy8877 166 SCIIK-GDTLIMFG 178 (180)
Q Consensus 166 ~~~~~-~~~i~~~G 178 (180)
++... +++++++|
T Consensus 219 ~i~~~~~g~~~~vg 232 (334)
T PRK13684 219 SMGFQPDGNLWMLA 232 (334)
T ss_pred eeeEcCCCCEEEEe
Confidence 33332 45666665
No 70
>KOG2055|consensus
Probab=67.93 E-value=39 Score=26.76 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=32.3
Q ss_pred EEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEE
Q psy8877 87 LVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWAR 151 (180)
Q Consensus 87 ~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~ 151 (180)
+|.||.++.+-.++..-..++.+-.....+..++.++++-|..+ -+..++..++.|..
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------HIHLLHAKTKELIT 339 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc-------eEEeehhhhhhhhh
Confidence 78999999998888543333332222223334455555555443 34455556665543
No 71
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=60.51 E-value=62 Score=23.43 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCEEEEEccccCCCC--Cceeeec-C-------CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEE
Q psy8877 22 DNKIFTFGGYCSGED--YVKRRPM-D-------GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLD 91 (180)
Q Consensus 22 ~~~iy~~GG~~~~~~--~~~~~~~-~-------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d 91 (180)
.+++|++.+...... +.....| . -.+|-+-.+-..+++++.+|.-- ...+.|.+||
T Consensus 30 ~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~--------------~~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNK--------------YNSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEe--------------cCCceEEEEE
Confidence 467999988654411 0111112 1 23444445555566777777552 2347899999
Q ss_pred CCCCeEE
Q psy8877 92 LKYFTWI 98 (180)
Q Consensus 92 ~~~~~w~ 98 (180)
+.+++-.
T Consensus 96 L~t~~v~ 102 (250)
T PF02191_consen 96 LTTRSVV 102 (250)
T ss_pred CcCCcEE
Confidence 9998755
No 72
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=59.65 E-value=54 Score=22.46 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEe-----ecC-CCCCCCCceeeEEEEEC-CEEEEEcCccCCc
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIR-----PNT-TGSVPVGRRSHSAFVYG-DGLYIFGGYNGLV 132 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~-----~~~-~~~~~~~r~~~~~~~~~-~~i~v~GG~~~~~ 132 (180)
++++|+|.| +..++||...++... +.. -..+|.. -.++...+ +++|+|-|.
T Consensus 110 ~~~~yfFkg----------------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~---- 167 (194)
T cd00094 110 NGKTYFFKG----------------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD---- 167 (194)
T ss_pred CCEEEEEeC----------------CEEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC----
Confidence 579999976 335777765554321 110 0112222 22344444 888888553
Q ss_pred cceeceeeEEEcCCCc
Q psy8877 133 EEHYNDIYRYCTRRQE 148 (180)
Q Consensus 133 ~~~~~~~~~~d~~~~~ 148 (180)
..++||..+++
T Consensus 168 -----~y~~~d~~~~~ 178 (194)
T cd00094 168 -----QYWRFDPRSKE 178 (194)
T ss_pred -----EEEEEeCccce
Confidence 68899987766
No 73
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=59.04 E-value=78 Score=24.07 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=24.7
Q ss_pred CcEEEEECCCC--eEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCC
Q psy8877 85 PDLVYLDLKYF--TWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ 147 (180)
Q Consensus 85 ~~~~~~d~~~~--~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~ 147 (180)
..++.+|..+. .|+.... . .+...+.+..++++|+.. . ...++.+|+.+.
T Consensus 289 G~l~~~d~~tG~~~W~~~~~----~-~~~~ssp~i~g~~l~~~~-~-------~G~l~~~d~~tG 340 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDEL----K-YRQLTAPAVVGGYLVVGD-F-------EGYLHWLSREDG 340 (377)
T ss_pred CeEEEEECCCCcEEEccccc----c-CCccccCEEECCEEEEEe-C-------CCEEEEEECCCC
Confidence 44667776654 4655211 1 111222234566666631 1 125777887655
No 74
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=59.00 E-value=83 Score=24.39 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=50.0
Q ss_pred CceEEeccCCCCCcCeeEEEeCCEEEEEccccCCCCCc------eeeecC----CCCC--CcceeeeEEEECCEEEEEcC
Q psy8877 1 MHWTVHLTGGPRRVNHAAVLNDNKIFTFGGYCSGEDYV------KRRPMD----GEPP--SYRDFHTANIIDGRMYIWGG 68 (180)
Q Consensus 1 ~~W~~~~~~~~~r~~~~~~~~~~~iy~~GG~~~~~~~~------~~~~~~----~~~p--~~r~~~~~~~~~~~lyv~GG 68 (180)
++|..+.. +.....-++.+++++|++.-. ...- .+..+. ..+. ........+...++|+++..
T Consensus 190 ~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~---G~l~~i~~~l~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R 264 (373)
T PLN03215 190 NVLKALKQ--MGYHFSDIIVHKGQTYALDSI---GIVYWINSDLEFSRFGTSLDENITDGCWTGDRRFVECCGELYIVER 264 (373)
T ss_pred CeeeEccC--CCceeeEEEEECCEEEEEcCC---CeEEEEecCCceeeecceecccccCCcccCceeEEEECCEEEEEEE
Confidence 46888753 344466788889999998321 0000 001111 1110 00112234556778998876
Q ss_pred CCCCCCcc-----cCCCceecCcEEEEECCCCeEEeecCC
Q psy8877 69 RGDESSLY-----HSGSEVYCPDLVYLDLKYFTWIRPNTT 103 (180)
Q Consensus 69 ~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~w~~~~~~ 103 (180)
........ ........-.+++.|.+..+|.++..-
T Consensus 265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred EccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 43211000 000112335667778889999999753
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.45 E-value=87 Score=23.81 Aligned_cols=104 Identities=10% Similarity=0.047 Sum_probs=52.5
Q ss_pred eeEEEeCCEEEEEccccC-----CCCCceeeecCCCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEE
Q psy8877 16 HAAVLNDNKIFTFGGYCS-----GEDYVKRRPMDGEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYL 90 (180)
Q Consensus 16 ~~~~~~~~~iy~~GG~~~-----~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 90 (180)
.+.++.++++|+.+.... ...-+..|.++-. . +...+.+..++.+|+... ...++.+
T Consensus 59 ~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~--~-~~~~~p~v~~~~v~v~~~---------------~g~l~al 120 (377)
T TIGR03300 59 LQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLD--E-RLSGGVGADGGLVFVGTE---------------KGEVIAL 120 (377)
T ss_pred cceEEECCEEEEECCCCeEEEEEccCCcEeeeecCC--C-CcccceEEcCCEEEEEcC---------------CCEEEEE
Confidence 455667888888764210 0111233333311 1 112233444667776432 1458889
Q ss_pred ECCCC--eEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCC--cEEE
Q psy8877 91 DLKYF--TWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ--EWAR 151 (180)
Q Consensus 91 d~~~~--~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~--~W~~ 151 (180)
|.++. .|+... +.. ...+.+..++++|+..+ ...++.+|+++. .|+.
T Consensus 121 d~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~--------~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 121 DAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN--------DGRLTALDAATGERLWTY 171 (377)
T ss_pred ECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC--------CCeEEEEEcCCCceeeEE
Confidence 98765 477632 111 12223345677766422 125888888755 4664
No 76
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=55.50 E-value=67 Score=22.25 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=43.8
Q ss_pred ceecCcEEEEECCCCeEEeecCCCC--CCCCceeeEEEEECC-E-EEEEcCccCCccceeceeeEEEcCCCcEEEeecCC
Q psy8877 81 EVYCPDLVYLDLKYFTWIRPNTTGS--VPVGRRSHSAFVYGD-G-LYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHG 156 (180)
Q Consensus 81 ~~~~~~~~~~d~~~~~w~~~~~~~~--~~~~r~~~~~~~~~~-~-i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~ 156 (180)
.+-...+|.+|..++.|.++..... --.|.+ +.-+++ . ++++| .....-.--..++.|++.++.-+.+....
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~---i~WiDD~~L~vIIG-~a~GTvS~GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKY---IEWIDDNNLAVIIG-YAHGTVSKGGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCce---eEEecCCcEEEEEc-cccceEccCCeEEEEEccCCceeEeeecc
Confidence 3556889999999998887743111 112332 334443 4 44455 32210122357999999999999998753
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=53.93 E-value=86 Score=23.00 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCcCeeEEE-eCCEEEEEccccCCCCCceeeecC---------CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCc
Q psy8877 12 RRVNHAAVL-NDNKIFTFGGYCSGEDYVKRRPMD---------GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSE 81 (180)
Q Consensus 12 ~r~~~~~~~-~~~~iy~~GG~~~~~~~~~~~~~~---------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 81 (180)
.-+..+... .++.+|.--|..+. +.+..+| .++|..-..-.++.++++||..-=.
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------------ 108 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------------ 108 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------------
T ss_pred cccCccEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------------
Confidence 334456666 56788887775442 3344444 3445555556788999999998432
Q ss_pred eecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCc
Q psy8877 82 VYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQE 148 (180)
Q Consensus 82 ~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~ 148 (180)
....++||..+.+-..- .+.+.-+-..+..+..+++.-|. +.++..||++.+
T Consensus 109 --~~~~f~yd~~tl~~~~~-----~~y~~EGWGLt~dg~~Li~SDGS--------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 109 --EGTGFVYDPNTLKKIGT-----FPYPGEGWGLTSDGKRLIMSDGS--------SRLYFLDPETFK 160 (264)
T ss_dssp --SSEEEEEETTTTEEEEE-----EE-SSS--EEEECSSCEEEE-SS--------SEEEEE-TTT-S
T ss_pred --CCeEEEEccccceEEEE-----EecCCcceEEEcCCCEEEEECCc--------cceEEECCcccc
Confidence 25678999876543221 12222233455556667776553 356777776543
No 78
>smart00284 OLF Olfactomedin-like domains.
Probab=53.60 E-value=85 Score=22.88 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=39.1
Q ss_pred CCEEEEEccccCCCCCceeeecC-------------CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEE
Q psy8877 22 DNKIFTFGGYCSGEDYVKRRPMD-------------GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLV 88 (180)
Q Consensus 22 ~~~iy~~GG~~~~~~~~~~~~~~-------------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 88 (180)
++++|++.+.... .+.+..|. -.+|.+-.+-..+++++.+|.-- .....|.
T Consensus 34 ~~~~wv~~~~~~~--~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~--------------~~s~~ii 97 (255)
T smart00284 34 KSLYWYMPLNTRV--LRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNK--------------FNSHDIC 97 (255)
T ss_pred CceEEEEccccCC--CcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEe--------------cCCccEE
Confidence 4788988764311 12222222 23566666677788899998752 2236799
Q ss_pred EEECCCCeEE
Q psy8877 89 YLDLKYFTWI 98 (180)
Q Consensus 89 ~~d~~~~~w~ 98 (180)
+||+.+++-.
T Consensus 98 KydL~t~~v~ 107 (255)
T smart00284 98 RFDLTTETYQ 107 (255)
T ss_pred EEECCCCcEE
Confidence 9999999865
No 79
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=49.92 E-value=1.1e+02 Score=22.98 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=59.8
Q ss_pred ceEEecc-CCCC-Cc-CeeEEEeCCEEEEEcccc----CCCCCceeeecCCCCCCcceeeeEEEE-CCEEEEEcCCCCCC
Q psy8877 2 HWTVHLT-GGPR-RV-NHAAVLNDNKIFTFGGYC----SGEDYVKRRPMDGEPPSYRDFHTANII-DGRMYIWGGRGDES 73 (180)
Q Consensus 2 ~W~~~~~-~~~~-r~-~~~~~~~~~~iy~~GG~~----~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~ 73 (180)
.|+.+.. ...+ .. ..++...++..|++|-.. ....-..|....-+.+.+-..+....+ ++.+++++..
T Consensus 48 tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~---- 123 (302)
T PF14870_consen 48 TWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR---- 123 (302)
T ss_dssp S-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----
T ss_pred cccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC----
Confidence 5877742 2222 22 335555678899987421 111113444443222223333444444 4577777533
Q ss_pred CcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEee
Q psy8877 74 SLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVI 153 (180)
Q Consensus 74 ~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~ 153 (180)
..+++=.-.-.+|+.+.. ....-.......-++++++++-. .. -+...|+-...|....
T Consensus 124 -----------G~iy~T~DgG~tW~~~~~---~~~gs~~~~~r~~dG~~vavs~~-G~------~~~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 124 -----------GAIYRTTDGGKTWQAVVS---ETSGSINDITRSSDGRYVAVSSR-GN------FYSSWDPGQTTWQPHN 182 (302)
T ss_dssp -------------EEEESSTTSSEEEEE----S----EEEEEE-TTS-EEEEETT-SS------EEEEE-TT-SS-EEEE
T ss_pred -----------CcEEEeCCCCCCeeEccc---CCcceeEeEEECCCCcEEEEECc-cc------EEEEecCCCccceEEc
Confidence 335554445679998753 11121221222235565555432 21 2335677788899887
Q ss_pred cCCCCCCCCcceeEEEE-CCEEEEE
Q psy8877 154 PHGAPPTKRRRQSCIIK-GDTLIMF 177 (180)
Q Consensus 154 ~~~~~~~~r~~~~~~~~-~~~i~~~ 177 (180)
.. ..|.-.++... ++.++++
T Consensus 183 r~----~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 183 RN----SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp ------SSS-EEEEEE-TTS-EEEE
T ss_pred cC----ccceehhceecCCCCEEEE
Confidence 65 34555555443 4566554
No 80
>KOG0263|consensus
Probab=49.21 E-value=1.6e+02 Score=24.89 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=48.9
Q ss_pred EECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceec
Q psy8877 58 IIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYN 137 (180)
Q Consensus 58 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 137 (180)
+..+.-|++.|..+ ..+-.+|..+..-.++-+ | .. .. -.+.+......|+.-|..+.
T Consensus 543 FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~-G-H~-~~-V~al~~Sp~Gr~LaSg~ed~------ 599 (707)
T KOG0263|consen 543 FHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFT-G-HK-GP-VTALAFSPCGRYLASGDEDG------ 599 (707)
T ss_pred ECCcccccccCCCC-------------ceEEEEEcCCCcEEEEec-C-CC-Cc-eEEEEEcCCCceEeecccCC------
Confidence 34667777777544 445667888888888753 2 11 11 22333333444454444333
Q ss_pred eeeEEEcCCCcEEEeecCCCCCCCCcceeEEE-ECCEEEEEcC
Q psy8877 138 DIYRYCTRRQEWARVIPHGAPPTKRRRQSCII-KGDTLIMFGG 179 (180)
Q Consensus 138 ~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~-~~~~i~~~GG 179 (180)
.+..||+.+.+--..-. + +.-...++.. .+|.+++.||
T Consensus 600 ~I~iWDl~~~~~v~~l~-~---Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLK-G---HTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred cEEEEEcCCCcchhhhh-c---ccCceeEEEEecCCCEEEecC
Confidence 46677876643322111 0 1112222222 4778888887
No 81
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=47.98 E-value=1.2e+02 Score=22.81 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=54.6
Q ss_pred ceEEeccCCCCCcCeeEEEeC-CEEEEEccccC----CCCCceeeecCCCCCCc-c-eeeeEEEECCEEEEEcCCCCCCC
Q psy8877 2 HWTVHLTGGPRRVNHAAVLND-NKIFTFGGYCS----GEDYVKRRPMDGEPPSY-R-DFHTANIIDGRMYIWGGRGDESS 74 (180)
Q Consensus 2 ~W~~~~~~~~~r~~~~~~~~~-~~iy~~GG~~~----~~~~~~~~~~~~~~p~~-r-~~~~~~~~~~~lyv~GG~~~~~~ 74 (180)
.|+.+. .|.......+...+ ++-|++|-... ..--..|.......+.+ . ...++...++..|+.|..
T Consensus 7 ~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~----- 80 (302)
T PF14870_consen 7 SWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP----- 80 (302)
T ss_dssp -EEEEE--S-SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-----
T ss_pred CcEEee-cCCCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-----
Confidence 588875 33333455555554 67888874310 00012233322222222 2 223444567789988631
Q ss_pred cccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 75 LYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 75 ~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
..+.+-.-.-.+|++++.....|... ....+.-++.+.+++.. ..+++-.-.-.+|+.+..
T Consensus 81 ----------g~ll~T~DgG~tW~~v~l~~~lpgs~-~~i~~l~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 81 ----------GLLLHTTDGGKTWERVPLSSKLPGSP-FGITALGDGSAELAGDR--------GAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp ----------TEEEEESSTTSS-EE----TT-SS-E-EEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-
T ss_pred ----------ceEEEecCCCCCcEEeecCCCCCCCe-eEEEEcCCCcEEEEcCC--------CcEEEeCCCCCCeeEccc
Confidence 22333333567999986422233222 22233345667676532 245554445669998776
Q ss_pred C
Q psy8877 155 H 155 (180)
Q Consensus 155 ~ 155 (180)
.
T Consensus 142 ~ 142 (302)
T PF14870_consen 142 E 142 (302)
T ss_dssp S
T ss_pred C
Confidence 4
No 82
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=47.49 E-value=1.4e+02 Score=23.45 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEE-EECCEEEEEc
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAF-VYGDGLYIFG 126 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~-~~~~~i~v~G 126 (180)
++.+++.|.... +++-...-.+|++.+.....+...+ .+. .-+++.|+.|
T Consensus 338 d~~~~a~G~~G~---------------v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G 388 (398)
T PLN00033 338 KKEAWAAGGSGI---------------LLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLG 388 (398)
T ss_pred CCcEEEEECCCc---------------EEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEe
Confidence 568888875422 3343446778999763223344444 232 2347888876
No 83
>PRK04792 tolB translocation protein TolB; Provisional
Probab=43.30 E-value=1.7e+02 Score=23.23 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=35.6
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
..+|++|..+.+++++...+.. .......-+++.+++...... ...++.+|+.+...+.+..
T Consensus 330 ~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~g----~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 330 PQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTNG----KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecCC----ceEEEEEECCCCCeEEccC
Confidence 5688899988888887431211 111122234554444333221 2368899998888777654
No 84
>KOG0310|consensus
Probab=42.05 E-value=1.8e+02 Score=23.31 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=46.0
Q ss_pred EECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceec
Q psy8877 58 IIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYN 137 (180)
Q Consensus 58 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 137 (180)
..+++|+..|+.++ .+-+||..++.--+.-. ....|...---...++.+++.|+-+.
T Consensus 77 R~DG~LlaaGD~sG--------------~V~vfD~k~r~iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~------- 133 (487)
T KOG0310|consen 77 RSDGRLLAAGDESG--------------HVKVFDMKSRVILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDK------- 133 (487)
T ss_pred ecCCeEEEccCCcC--------------cEEEeccccHHHHHHHh--hccCceeEEEecccCCeEEEecCCCc-------
Confidence 34789999997655 46778855432222111 11111111111234677888765332
Q ss_pred eeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcCC
Q psy8877 138 DIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGGS 180 (180)
Q Consensus 138 ~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG~ 180 (180)
.+..+|.++.. .+....++ ...-...+++..++.|++-||+
T Consensus 134 v~k~~d~s~a~-v~~~l~~h-tDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 134 VVKYWDLSTAY-VQAELSGH-TDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred eEEEEEcCCcE-EEEEecCC-cceeEeeccccCCCeEEEecCC
Confidence 23334555544 23333221 1222222333346778877774
No 85
>KOG0310|consensus
Probab=41.69 E-value=1.8e+02 Score=23.28 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=39.0
Q ss_pred EEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCcccee
Q psy8877 57 NIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHY 136 (180)
Q Consensus 57 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 136 (180)
+..++.++++|+-.. .+-.+|.++.. .+.+..+ .............++.|++.||++..
T Consensus 119 ~~~d~t~l~s~sDd~--------------v~k~~d~s~a~-v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~----- 177 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDK--------------VVKYWDLSTAY-VQAELSG-HTDYVRCGDISPANDHIVVTGSYDGK----- 177 (487)
T ss_pred cccCCeEEEecCCCc--------------eEEEEEcCCcE-EEEEecC-CcceeEeeccccCCCeEEEecCCCce-----
Confidence 346789999986433 12233555554 3433322 22222222333456789999999874
Q ss_pred ceeeEEEcCCCc
Q psy8877 137 NDIYRYCTRRQE 148 (180)
Q Consensus 137 ~~~~~~d~~~~~ 148 (180)
+-.||+...+
T Consensus 178 --vrl~DtR~~~ 187 (487)
T KOG0310|consen 178 --VRLWDTRSLT 187 (487)
T ss_pred --EEEEEeccCC
Confidence 6677877664
No 86
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=40.93 E-value=1.5e+02 Score=22.04 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=43.5
Q ss_pred CcEEEEECCCC-----eEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCc-EEEeecCCCC
Q psy8877 85 PDLVYLDLKYF-----TWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQE-WARVIPHGAP 158 (180)
Q Consensus 85 ~~~~~~d~~~~-----~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~-W~~~~~~~~~ 158 (180)
..++.|+.... +.+.+... ..+.+ -.+.+.+++++++.-| ..+..|++...+ +...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~--V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~-- 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGP--VTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYD-- 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS---EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE---
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCc--ceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheec--
Confidence 66888888774 55554321 12223 3456667888666444 256677777777 88877753
Q ss_pred CCCCcceeEEEECCEEE
Q psy8877 159 PTKRRRQSCIIKGDTLI 175 (180)
Q Consensus 159 ~~~r~~~~~~~~~~~i~ 175 (180)
.+-...++...++.|+
T Consensus 128 -~~~~i~sl~~~~~~I~ 143 (321)
T PF03178_consen 128 -SPFYITSLSVFKNYIL 143 (321)
T ss_dssp -BSSSEEEEEEETTEEE
T ss_pred -ceEEEEEEeccccEEE
Confidence 2334444555566544
No 87
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=40.61 E-value=30 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.583 Sum_probs=13.1
Q ss_pred CCEEEEEcCccCCccceeceeeEEEc
Q psy8877 119 GDGLYIFGGYNGLVEEHYNDIYRYCT 144 (180)
Q Consensus 119 ~~~i~v~GG~~~~~~~~~~~~~~~d~ 144 (180)
-|.++|.||-... ....+-+++||+
T Consensus 36 AG~F~vLGG~~EM-pW~FdRlykydI 60 (103)
T PF14830_consen 36 AGTFFVLGGEKEM-PWAFDRLYKYDI 60 (103)
T ss_dssp EEEEEE---TTS----B-SS-EEEE-
T ss_pred ccEEEEcCCCccC-ccccCccchhhH
Confidence 3678999998776 567888999986
No 88
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=39.23 E-value=1.6e+02 Score=21.82 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=54.4
Q ss_pred eeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECC-----CCeEEeecCCCCCCCCceeeEEEEECCEEEEEc
Q psy8877 52 DFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLK-----YFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFG 126 (180)
Q Consensus 52 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~G 126 (180)
.-|+.|.+++.=|.+|=.++.- ....-.+..+... .-.=++++. +.-......+.-..++.+|+.-
T Consensus 137 e~HSFa~i~~~~fA~GyHnGD~-------sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyY~g~LyLtT 207 (367)
T PF12217_consen 137 ELHSFATIDDNQFAVGYHNGDV-------SPRELGFLYFSDAFASPGVFVRRIIPS--EYERNASEPCVKYYDGVLYLTT 207 (367)
T ss_dssp EEEEEEE-SSS-EEEEEEE-SS-------SS-EEEEEEETTTTT-TT--EEEE--G--GG-TTEEEEEEEEETTEEEEEE
T ss_pred eeeeeeEecCCceeEEeccCCC-------CcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEE
Confidence 4577888888777776332211 1111222222211 112222322 1222334445556799999975
Q ss_pred CccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEc
Q psy8877 127 GYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFG 178 (180)
Q Consensus 127 G~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~G 178 (180)
-.+.. ...-..+.+-+..-..|+.+..+.. ...........++.||+||
T Consensus 208 Rgt~~-~~~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFg 256 (367)
T PF12217_consen 208 RGTLP-TNPGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFG 256 (367)
T ss_dssp EES-T-TS---EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEE
T ss_pred cCcCC-CCCcceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEe
Confidence 33322 2345567777888899999987531 2223334566799999998
No 89
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=38.56 E-value=2.1e+02 Score=23.16 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCCcCeeEEEeCCEEEEEc----------cccCCCCCceeeecC------CCCCCcceeeeEEEECCEEEEEcCCCCCC
Q psy8877 10 GPRRVNHAAVLNDNKIFTFG----------GYCSGEDYVKRRPMD------GEPPSYRDFHTANIIDGRMYIWGGRGDES 73 (180)
Q Consensus 10 ~~~r~~~~~~~~~~~iy~~G----------G~~~~~~~~~~~~~~------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 73 (180)
|.+...+.-.+..+-+.++| |+-+...-.-|..-+ .-.-.+-.-.+-..+++++|.+.-..+
T Consensus 169 ~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG-- 246 (668)
T COG4946 169 PLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEG-- 246 (668)
T ss_pred eccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccC--
Q ss_pred CcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEee
Q psy8877 74 SLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVI 153 (180)
Q Consensus 74 ~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~ 153 (180)
...+|.-|++.+--++-.. .--+...-+..+++-.|| ..-.++|.|||+++..+++.
T Consensus 247 ----------~GnlYSvdldGkDlrrHTn-----FtdYY~R~~nsDGkrIvF--------q~~GdIylydP~td~lekld 303 (668)
T COG4946 247 ----------VGNLYSVDLDGKDLRRHTN-----FTDYYPRNANSDGKRIVF--------QNAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred ----------ccceEEeccCCchhhhcCC-----chhccccccCCCCcEEEE--------ecCCcEEEeCCCcCcceeee
Q ss_pred cCCCCCCCC
Q psy8877 154 PHGAPPTKR 162 (180)
Q Consensus 154 ~~~~~~~~r 162 (180)
+. +|..|
T Consensus 304 I~--lpl~r 310 (668)
T COG4946 304 IG--LPLDR 310 (668)
T ss_pred cC--Ccccc
No 90
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=38.32 E-value=1.8e+02 Score=22.30 Aligned_cols=61 Identities=15% Similarity=-0.038 Sum_probs=35.6
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEE-EECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAF-VYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
..+|.+|..+..+.++...+ ....... .-+++.+++..... ....++.+|+.+..++.+..
T Consensus 302 ~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~----~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 302 PQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG----GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC----CceEEEEEeCCCCCeEEccC
Confidence 46888898888877764311 1111222 22456555544322 13468999998877776654
No 91
>KOG0281|consensus
Probab=37.84 E-value=1.2e+02 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=22.2
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCc
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGY 128 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 128 (180)
.++-.++..|....+. +..-+.+-++....+++.|.|-.
T Consensus 340 RTikvW~~st~efvRt-----l~gHkRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRT-----LNGHKRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred ceEEEEeccceeeehh-----hhcccccceehhccCeEEEecCC
Confidence 4456667666666554 22223344555678888776543
No 92
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.26 E-value=52 Score=15.70 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=14.2
Q ss_pred EEEEECCEEEEEcCccCCccceeceeeEEEcCC
Q psy8877 114 SAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRR 146 (180)
Q Consensus 114 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~ 146 (180)
+.++.++++|+.+. ...++.+|+++
T Consensus 16 ~~~v~~g~vyv~~~--------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG--------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T--------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC--------CCEEEEEeCCC
Confidence 34666788877543 22688888754
No 93
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=35.94 E-value=37 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=17.7
Q ss_pred eeceeeEEEcCCCcEEEeecCC
Q psy8877 135 HYNDIYRYCTRRQEWARVIPHG 156 (180)
Q Consensus 135 ~~~~~~~~d~~~~~W~~~~~~~ 156 (180)
....+|.||..+++|++....+
T Consensus 27 ~~v~vY~f~~~~~~W~K~~iEG 48 (122)
T PF06058_consen 27 SHVVVYKFDHETNEWEKTDIEG 48 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEE
T ss_pred CeEEEEeecCCCCcEeecCcEe
Confidence 4557899999999999987643
No 94
>KOG1332|consensus
Probab=35.44 E-value=1.8e+02 Score=21.34 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=43.1
Q ss_pred CCCCCcceeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEE
Q psy8877 45 GEPPSYRDFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYI 124 (180)
Q Consensus 45 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v 124 (180)
+....++.+.+++..++.++|+-- +.+...|+.-... +.|.+.+..+=...++.+-|
T Consensus 217 P~~gl~~s~iAS~SqDg~viIwt~----------------------~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 217 PSVGLPKSTIASCSQDGTVIIWTK----------------------DEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred cccCCCceeeEEecCCCcEEEEEe----------------------cCccCcccccccc-cCCcceEEEEEeccccEEEE
Confidence 455577777777777777777621 2345566653221 25555554443344444555
Q ss_pred EcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 125 FGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 125 ~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
.||-+. -.+|+=+ .+.+|+++..
T Consensus 274 s~GdNk------vtlwke~-~~Gkw~~v~~ 296 (299)
T KOG1332|consen 274 SGGDNK------VTLWKEN-VDGKWEEVGE 296 (299)
T ss_pred ecCCcE------EEEEEeC-CCCcEEEccc
Confidence 544322 1344433 3558998764
No 95
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.62 E-value=2.2e+02 Score=21.54 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceecee
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDI 139 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 139 (180)
+++|++.-+-. ...--+|..|.++..-+++.. -|... .+...+..+|-+ .+-..-...+
T Consensus 117 ~D~LLlAR~DG-----------h~nLGvy~ldr~~g~~~~L~~---~ps~K---G~~~~D~a~F~i----~~~~~g~~~i 175 (339)
T PF09910_consen 117 EDRLLLARADG-----------HANLGVYSLDRRTGKAEKLSS---NPSLK---GTLVHDYACFGI----NNFHKGVSGI 175 (339)
T ss_pred cCEEEEEecCC-----------cceeeeEEEcccCCceeeccC---CCCcC---ceEeeeeEEEec----cccccCCceE
Confidence 56888775432 333568888888888888753 22221 122333333322 1112346689
Q ss_pred eEEEcCCCcE--EEeecCC----CCCCCCcceeEEEECCEEEEE
Q psy8877 140 YRYCTRRQEW--ARVIPHG----APPTKRRRQSCIIKGDTLIMF 177 (180)
Q Consensus 140 ~~~d~~~~~W--~~~~~~~----~~~~~r~~~~~~~~~~~i~~~ 177 (180)
.++|+.+++| +...... .+...|....++...++++.|
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 9999999999 4443221 111223344455555655543
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=32.52 E-value=2.4e+02 Score=21.94 Aligned_cols=62 Identities=6% Similarity=-0.097 Sum_probs=34.2
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEE-EECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAF-VYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPH 155 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 155 (180)
..+|++|..+.++.++...+ .+..... .-+++.+++...... ...++.+|+.+...+.+...
T Consensus 311 ~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~----~~~l~~~dl~tg~~~~lt~~ 373 (430)
T PRK00178 311 PQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG----NFHVAAQDLQRGSVRILTDT 373 (430)
T ss_pred ceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC----ceEEEEEECCCCCEEEccCC
Confidence 46888888888877764311 1111122 224443333222111 23588999998888777653
No 97
>KOG0263|consensus
Probab=32.36 E-value=3.2e+02 Score=23.32 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=23.0
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGL 131 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~ 131 (180)
..|-.+|+.+.+-...- .+ . ..-........++.+++.||.+..
T Consensus 599 ~~I~iWDl~~~~~v~~l-~~-H-t~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQL-KG-H-TGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CcEEEEEcCCCcchhhh-hc-c-cCceeEEEEecCCCEEEecCCCCe
Confidence 45667777665422211 01 1 122222233558899999988663
No 98
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=31.49 E-value=78 Score=17.47 Aligned_cols=16 Identities=6% Similarity=-0.188 Sum_probs=13.3
Q ss_pred CcEEEEECCCCeEEee
Q psy8877 85 PDLVYLDLKYFTWIRP 100 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~ 100 (180)
-.|++||++++.-+-+
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 6799999999987654
No 99
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=31.13 E-value=91 Score=16.66 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=14.0
Q ss_pred ECCEEEEEcCccCCccceeceeeEEEc
Q psy8877 118 YGDGLYIFGGYNGLVEEHYNDIYRYCT 144 (180)
Q Consensus 118 ~~~~i~v~GG~~~~~~~~~~~~~~~d~ 144 (180)
-++||++.|-...........+.+|++
T Consensus 10 ~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 10 SDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred CCCcEEEEEEeecCCCcccEEEEEECC
Confidence 378998887443211112234566654
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=30.88 E-value=2.7e+02 Score=22.05 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=35.3
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
.++|.+|.++.+.+++.... .........-+++.+++..... ....++.+|+++.+++.+..
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~----~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHR----AIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred eEEEEEECCCCCeEECccCC----CCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEec
Confidence 56899999998888774311 1111112222444333322111 12479999999888888753
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=30.73 E-value=2.7e+02 Score=21.90 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=33.8
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeec
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~ 154 (180)
..+|.+|+.+....++...+ .........-+++.+++...... ...++.+|+++..++.+..
T Consensus 311 ~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g----~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 311 PQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG----QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEeCC
Confidence 46777787777666653211 11111222224554444332221 2368889999998887764
No 102
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=30.19 E-value=63 Score=14.50 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=8.7
Q ss_pred CeeEEEe-CCEEEEEcc
Q psy8877 15 NHAAVLN-DNKIFTFGG 30 (180)
Q Consensus 15 ~~~~~~~-~~~iy~~GG 30 (180)
.|++++. ++++|.+|-
T Consensus 9 ~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SEEEEEE-TTEEEEEE-
T ss_pred CEEEEEEcCCCEEEEcC
Confidence 3444443 467777763
No 103
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=30.00 E-value=2.4e+02 Score=21.06 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred EEECCEEEEEcCCCCCCCcccCCCce-ecCcEEEEECC-CCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCcc
Q psy8877 57 NIIDGRMYIWGGRGDESSLYHSGSEV-YCPDLVYLDLK-YFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYN 129 (180)
Q Consensus 57 ~~~~~~lyv~GG~~~~~~~~~~~~~~-~~~~~~~~d~~-~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~ 129 (180)
...+++.+|+|-.... .. -.+.+..|.-. .++|+.++. .+....-..-.+.+++.+ |+||..
T Consensus 33 F~~~Gk~~IaGRVE~R--------dswe~S~V~fF~e~g~~~w~~v~~--~~~~~LqDPF~t~I~gel-ifGGve 96 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKR--------DSWEHSEVRFFEETGKDEWTPVEG--APVFQLQDPFVTRIQGEL-IFGGVE 96 (298)
T ss_dssp EEETTEEEEEEEEE-T--------T-SS--EEEEEEEEETTEEEE-TT-----BS-EEEEEEEETTEE-EEEEEE
T ss_pred eeECCEEEEEeeeecC--------CchhccEEEEEEEeCCCeEEECCC--cceEEecCcceeeECCEE-EEeeEE
Confidence 3568899999866542 22 23667777655 889999964 344445555667788886 677753
No 104
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=29.89 E-value=54 Score=14.73 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=8.4
Q ss_pred eEEEeCCEEEEEcccc
Q psy8877 17 AAVLNDNKIFTFGGYC 32 (180)
Q Consensus 17 ~~~~~~~~iy~~GG~~ 32 (180)
-++++++++..+||.+
T Consensus 8 K~~vvD~~~a~vGg~n 23 (28)
T PF00614_consen 8 KFVVVDDRVAFVGGAN 23 (28)
T ss_dssp -EEEETTTEEEEE---
T ss_pred EEEEEcCCEEEECcee
Confidence 4556677777777753
No 105
>KOG2321|consensus
Probab=29.39 E-value=1.8e+02 Score=24.06 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=30.0
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ 147 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~ 147 (180)
+++|+++++...|-+.-.. ..+-..+..+.--..++.+|+-.+ .++.+|+.+.
T Consensus 155 ~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g-------~VEfwDpR~k 207 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDG-------VVEFWDPRDK 207 (703)
T ss_pred cceEEEEcccccccccccc---ccccceeeeecCccceEEecccCc-------eEEEecchhh
Confidence 6799999999999875321 112122222221244667776443 4666776544
No 106
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=29.36 E-value=2.1e+02 Score=20.40 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCeEEeecCCCCCCCCceeeEEEEE-CCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCCcce-eEEEE-
Q psy8877 94 YFTWIRPNTTGSVPVGRRSHSAFVY-GDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKRRRQ-SCIIK- 170 (180)
Q Consensus 94 ~~~w~~~~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~-~~~~~- 170 (180)
-.+|+.+... .+|.+.....+... +++++++...... ...-.++.-.-...+|.........+...... +++..
T Consensus 193 G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~--r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~ 269 (275)
T PF13088_consen 193 GRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDG--RSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLP 269 (275)
T ss_dssp TSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSST--SEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEE
T ss_pred CCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCC--CCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeC
Confidence 4579986521 24555444444443 5677777652111 12223333333477998765542111122333 34444
Q ss_pred CCEEEE
Q psy8877 171 GDTLIM 176 (180)
Q Consensus 171 ~~~i~~ 176 (180)
++.|+|
T Consensus 270 dg~l~i 275 (275)
T PF13088_consen 270 DGKLYI 275 (275)
T ss_dssp TTEEEE
T ss_pred CCcCCC
Confidence 568876
No 107
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=28.04 E-value=3.4e+02 Score=22.22 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=39.9
Q ss_pred eEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCC--eEEeecCCCCCCCC-----ceeeEEEEECCEEEEEcC
Q psy8877 55 TANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYF--TWIRPNTTGSVPVG-----RRSHSAFVYGDGLYIFGG 127 (180)
Q Consensus 55 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~--~w~~~~~~~~~~~~-----r~~~~~~~~~~~i~v~GG 127 (180)
+-++.++.||+... ...++.+|..+. .|+.-........+ ......++.++++|+..
T Consensus 64 tPvv~~g~vyv~s~---------------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t- 127 (527)
T TIGR03075 64 QPLVVDGVMYVTTS---------------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT- 127 (527)
T ss_pred CCEEECCEEEEECC---------------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-
Confidence 44567888888642 135788888765 47753210000000 11122355677877632
Q ss_pred ccCCccceeceeeEEEcCCC--cEEE
Q psy8877 128 YNGLVEEHYNDIYRYCTRRQ--EWAR 151 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~d~~~~--~W~~ 151 (180)
. ...++.+|.++. .|+.
T Consensus 128 ~-------dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 128 L-------DARLVALDAKTGKVVWSK 146 (527)
T ss_pred C-------CCEEEEEECCCCCEEeec
Confidence 1 235788887655 5654
No 108
>KOG0649|consensus
Probab=27.08 E-value=2.6e+02 Score=20.57 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=39.9
Q ss_pred CcEEEEECCCCeEEeecCCCC---CCCCceee--EEEEECCEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGS---VPVGRRSH--SAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPP 159 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~---~~~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~ 159 (180)
.++-++|..+.+-.++-.... .-.|-.+. .+...+..-+|+||-.. +-.+++...+-+.+-+
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~--------lslwhLrsse~t~vfp----- 244 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK--------LSLWHLRSSESTCVFP----- 244 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc--------eeEEeccCCCceEEEe-----
Confidence 345566877777665421111 11111222 33344556667776433 3345566666665544
Q ss_pred CCCcceeEEEECCEEEEEc
Q psy8877 160 TKRRRQSCIIKGDTLIMFG 178 (180)
Q Consensus 160 ~~r~~~~~~~~~~~i~~~G 178 (180)
.+..-+-+..+++.+++.|
T Consensus 245 ipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 245 IPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred cccceeEeeeecceEEEec
Confidence 2222344455667766665
No 109
>KOG0646|consensus
Probab=27.02 E-value=1.9e+02 Score=23.13 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=34.8
Q ss_pred eeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEE---EECCEEEEEcCcc
Q psy8877 53 FHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAF---VYGDGLYIFGGYN 129 (180)
Q Consensus 53 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~---~~~~~i~v~GG~~ 129 (180)
.++.+..+.-.|+++|... .++|.+...+..--.+- .+.|..-.+ ..++.+++.||.+
T Consensus 84 v~al~s~n~G~~l~ag~i~-------------g~lYlWelssG~LL~v~------~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-------------GNLYLWELSSGILLNVL------SAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred eeeeecCCCceEEEeeccc-------------CcEEEEEeccccHHHHH------HhhccceeEEEEeCCCcEEEecCCC
Confidence 3556667778888887433 56888887776543331 222322222 2367788887765
Q ss_pred C
Q psy8877 130 G 130 (180)
Q Consensus 130 ~ 130 (180)
+
T Consensus 145 g 145 (476)
T KOG0646|consen 145 G 145 (476)
T ss_pred c
Confidence 4
No 110
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=26.99 E-value=3.5e+02 Score=22.11 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=58.2
Q ss_pred CeeEEEeCCEEEEEcccc-----CCCCCceeeecCCCCCCcc--------eeeeEEEECCEEEEEcCCCCCCCcccCCCc
Q psy8877 15 NHAAVLNDNKIFTFGGYC-----SGEDYVKRRPMDGEPPSYR--------DFHTANIIDGRMYIWGGRGDESSLYHSGSE 81 (180)
Q Consensus 15 ~~~~~~~~~~iy~~GG~~-----~~~~~~~~~~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 81 (180)
..+-++.+++||+..... ....-...|.++...+... .....+..++++|+...
T Consensus 62 ~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------------- 128 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------------- 128 (527)
T ss_pred ccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------------
Confidence 345567789999865421 1111135566553322111 11223556777776421
Q ss_pred eecCcEEEEECCCCe--EEeecCCCCCCCC-ceeeEEEEECCEEEEEcCccCCccceeceeeEEEcCCC--cEEE
Q psy8877 82 VYCPDLVYLDLKYFT--WIRPNTTGSVPVG-RRSHSAFVYGDGLYIFGGYNGLVEEHYNDIYRYCTRRQ--EWAR 151 (180)
Q Consensus 82 ~~~~~~~~~d~~~~~--w~~~~~~~~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~d~~~~--~W~~ 151 (180)
...++.+|.++.+ |+.-. ...... ....+-++.++++|+-....+ ......+..||.++. .|+.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~~--~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGGE--FGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred --CCEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeecccc--cCCCcEEEEEECCCCceeEec
Confidence 2458889988774 66532 111111 122233456787766422111 112346777777655 4553
No 111
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=26.92 E-value=1.2e+02 Score=18.09 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=15.7
Q ss_pred eeceeeEEEcCCCcEEEeec
Q psy8877 135 HYNDIYRYCTRRQEWARVIP 154 (180)
Q Consensus 135 ~~~~~~~~d~~~~~W~~~~~ 154 (180)
....+++|||.+++.+.+..
T Consensus 35 ~~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp --EEEEEEETTTTEEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehh
Confidence 45579999999999988765
No 112
>PRK11408 hypothetical protein; Provisional
Probab=25.83 E-value=1.1e+02 Score=20.22 Aligned_cols=19 Identities=11% Similarity=0.322 Sum_probs=16.7
Q ss_pred cCcEEEEECCCCeEEeecC
Q psy8877 84 CPDLVYLDLKYFTWIRPNT 102 (180)
Q Consensus 84 ~~~~~~~d~~~~~w~~~~~ 102 (180)
...++.|.|++.+|+.+..
T Consensus 46 ~G~v~Y~aPDtL~WE~l~~ 64 (145)
T PRK11408 46 VGEVYYFAPDTLKWESLEL 64 (145)
T ss_pred CCeEEEeCCCccceeccCC
Confidence 5789999999999999853
No 113
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.91 E-value=2.3e+02 Score=19.36 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEEeecCCCCCCCCceeeEEEEECCEEEEEcCccCCccceecee
Q psy8877 60 DGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYGDGLYIFGGYNGLVEEHYNDI 139 (180)
Q Consensus 60 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 139 (180)
++++.++-|... ..+..||.+...-..+ +........-.-++++++++|.... ..++
T Consensus 71 g~~favi~g~~~-------------~~v~lyd~~~~~i~~~------~~~~~n~i~wsP~G~~l~~~g~~n~----~G~l 127 (194)
T PF08662_consen 71 GNEFAVIYGSMP-------------AKVTLYDVKGKKIFSF------GTQPRNTISWSPDGRFLVLAGFGNL----NGDL 127 (194)
T ss_pred CCEEEEEEccCC-------------cccEEEcCcccEeEee------cCCCceEEEECCCCCEEEEEEccCC----CcEE
Confidence 457766655333 3677888863333332 1111222122235788888887543 2467
Q ss_pred eEEEcCC
Q psy8877 140 YRYCTRR 146 (180)
Q Consensus 140 ~~~d~~~ 146 (180)
..||..+
T Consensus 128 ~~wd~~~ 134 (194)
T PF08662_consen 128 EFWDVRK 134 (194)
T ss_pred EEEECCC
Confidence 7888763
No 114
>KOG0316|consensus
Probab=24.83 E-value=2.8e+02 Score=20.27 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=43.6
Q ss_pred CcEEEEECCCCeEEeecCCCCCCCCceeeEEEEEC--CEEEEEcCccCCccceeceeeEEEcCCCcEEEeecCCCCCCCC
Q psy8877 85 PDLVYLDLKYFTWIRPNTTGSVPVGRRSHSAFVYG--DGLYIFGGYNGLVEEHYNDIYRYCTRRQEWARVIPHGAPPTKR 162 (180)
Q Consensus 85 ~~~~~~d~~~~~w~~~~~~~~~~~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r 162 (180)
..++.+|.++.+-.+--- -..+.. -++.++ ..+.+.|+.+. .+..+|-....-+.++... ..+
T Consensus 81 k~v~vwDV~TGkv~Rr~r---gH~aqV--NtV~fNeesSVv~SgsfD~-------s~r~wDCRS~s~ePiQild---ea~ 145 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFR---GHLAQV--NTVRFNEESSVVASGSFDS-------SVRLWDCRSRSFEPIQILD---EAK 145 (307)
T ss_pred ceEEEEEcccCeeeeecc---ccccee--eEEEecCcceEEEeccccc-------eeEEEEcccCCCCccchhh---hhc
Confidence 447888998887555310 011111 123343 34666666544 4677787777777777653 344
Q ss_pred cceeEEEECCEEEEEc
Q psy8877 163 RRQSCIIKGDTLIMFG 178 (180)
Q Consensus 163 ~~~~~~~~~~~i~~~G 178 (180)
.+-+.+.+.+..++.|
T Consensus 146 D~V~Si~v~~heIvaG 161 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAG 161 (307)
T ss_pred CceeEEEecccEEEee
Confidence 4555555555544444
No 115
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=24.50 E-value=35 Score=18.33 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=9.6
Q ss_pred EEECCCCeEEee
Q psy8877 89 YLDLKYFTWIRP 100 (180)
Q Consensus 89 ~~d~~~~~w~~~ 100 (180)
.||+.|++|.-.
T Consensus 22 ~YD~~Tr~W~F~ 33 (55)
T PF07443_consen 22 NYDPKTRKWNFS 33 (55)
T ss_pred ccCccceeeeee
Confidence 469999999853
No 116
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=24.50 E-value=3.1e+02 Score=20.98 Aligned_cols=21 Identities=5% Similarity=-0.108 Sum_probs=16.0
Q ss_pred eceeeEEEcCCCcEEEeecCC
Q psy8877 136 YNDIYRYCTRRQEWARVIPHG 156 (180)
Q Consensus 136 ~~~~~~~d~~~~~W~~~~~~~ 156 (180)
...+..+|+++.+.+.+...+
T Consensus 222 tGev~~vD~~~G~~e~Va~vp 242 (335)
T TIGR03032 222 RGELGYVDPQAGKFQPVAFLP 242 (335)
T ss_pred CCEEEEEcCCCCcEEEEEECC
Confidence 446888888888888887653
No 117
>KOG4378|consensus
Probab=22.68 E-value=4.3e+02 Score=21.67 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=21.4
Q ss_pred eeeeEEEECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCeEE
Q psy8877 52 DFHTANIIDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFTWI 98 (180)
Q Consensus 52 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~w~ 98 (180)
..-+.+-.+..|++-=|++ ..|+.||...+.-+
T Consensus 212 ~gicfspsne~l~vsVG~D--------------kki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYD--------------KKINIYDIRSQAST 244 (673)
T ss_pred CcceecCCccceEEEeccc--------------ceEEEeeccccccc
Confidence 3334455678888887763 45889998765433
No 118
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=21.85 E-value=1.9e+02 Score=17.34 Aligned_cols=34 Identities=6% Similarity=-0.088 Sum_probs=19.5
Q ss_pred eeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEE
Q psy8877 139 IYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIM 176 (180)
Q Consensus 139 ~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~ 176 (180)
-++||+.+.+....+.. .+...+.+.+-++.|+|
T Consensus 66 g~~Fdl~tG~~~~~p~~----~~l~~y~v~v~~g~v~V 99 (101)
T TIGR02377 66 AGCFDYRTGEALNPPVC----VNLKTYPVKVVDGAVYV 99 (101)
T ss_pred CCEEECCCCcccCCCcc----CCcceEeEEEECCEEEE
Confidence 46788888866543321 12233344455788876
No 119
>KOG1645|consensus
Probab=21.51 E-value=1.3e+02 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=17.3
Q ss_pred ECCEEEEEcCCCCCCCcccCCCceecCcEEEEECCCCe
Q psy8877 59 IDGRMYIWGGRGDESSLYHSGSEVYCPDLVYLDLKYFT 96 (180)
Q Consensus 59 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (180)
.+++=||.+|... ..+++||....+
T Consensus 245 lde~h~IYaGl~n-------------G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 245 LDERHVIYAGLQN-------------GMVLVYDMRQPE 269 (463)
T ss_pred cCCcceeEEeccC-------------ceEEEEEccCCC
Confidence 4667777777655 568889876544
No 120
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=21.07 E-value=96 Score=13.49 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=11.5
Q ss_pred eeeeEEEECCEEEEEcCCC
Q psy8877 52 DFHTANIIDGRMYIWGGRG 70 (180)
Q Consensus 52 ~~~~~~~~~~~lyv~GG~~ 70 (180)
.+....+++++..++|+.+
T Consensus 5 ~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 5 LHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred EEeEEEEEcCCEEEEeCcc
Confidence 3344566677776776654
No 121
>KOG0281|consensus
Probab=20.41 E-value=2.7e+02 Score=21.60 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=22.7
Q ss_pred eeeEEEcCCCcEEEeecCCCCCCCCcceeEEEECCEEEEEcC
Q psy8877 138 DIYRYCTRRQEWARVIPHGAPPTKRRRQSCIIKGDTLIMFGG 179 (180)
Q Consensus 138 ~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~i~~~GG 179 (180)
++-.+++.+.++...-. ..+.+-++..+++++++-|-
T Consensus 341 TikvW~~st~efvRtl~-----gHkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred eEEEEeccceeeehhhh-----cccccceehhccCeEEEecC
Confidence 56677766666554322 23445566667888887763
Done!