BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8879
(694 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 3/224 (1%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L N + V+ T L +L+ L LS N + K+E +F GL SLN L+L N+L T+
Sbjct: 40 LNLQENSIQVIRTDTFKHLR-HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
L LR L L+ N + A + S+ LDL + + L +L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
+ L++ + L L +L L N++D++ SF+ L++L L L H ++
Sbjct: 159 RYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ + L +L L+LSHN L +L DL TPL L+ + L+ N
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 14/238 (5%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L+ VP S + N L+L N + + +FK L L L LS N + +
Sbjct: 26 LAEVPAS----IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L +L L L NRLT A + L + +L L +N + + R+ SL+ L +
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 275 -NQFSSVRRGALAGLDKLTSLS---CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
+ + A GL L L+ C+ I L AL L L+L+ NR+ +
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT-----ALVRLEELELSGNRLDLIRP 195
Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
S L++L L L H + + ++ LKSL+EL L N++ P ++ + ++
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLE 253
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 3/224 (1%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L N + V+ T L +L+ L LS N + K+E +F GL SLN L+L N+L T+
Sbjct: 40 LNLQENSIQVIRTDTFKHLR-HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
L LR L L+ N + A + S+ LDL + + L +L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
+ L++ + L L +L L N++D++ SF+ L++L L L H ++
Sbjct: 159 RYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ + L +L L+LSHN L +L DL TPL L+ + L+ N
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 103/237 (43%), Gaps = 6/237 (2%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
GA + + P P L VPT A + R+ L N++ + SF+ +L
Sbjct: 3 GACVCYNEPKVTTSCPQQGLQAVPTGIPA----SSQRIFLHGNRISYVPAASFQSCRNLT 58
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN-RLTVSVVAALQGLRSVTDLDLSHNLLAG 254
L L N L + L L L L N +L V +GL + L L L
Sbjct: 59 ILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ- 117
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
LGP L++L+ L + N ++ L LT L H N+I + +H+FR L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHS 177
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L L N + V + L L TL L N L L +++ PL+SLQ LRL+DN
Sbjct: 178 LDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
P + R+ L GNR++ A+ Q R++T L L N LAG + + L+ L+ L ++
Sbjct: 30 PASSQRIF-LHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLS 87
Query: 274 HN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
N Q V GL L +L + L FR L+ L +L L N + A+ +
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNT 147
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L NLT L L N + ++ + L SL L L N ++
Sbjct: 148 FRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
G+S+ + L L N + ++ ++ L +L+ L LS N + +E +F GL++LN L+L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
N+L T+ L L+ L L+ N + A + S+ LDL +
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
LS+L+ L++A + L L KL L N + + SF+ L L L
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
+ ++I + + +L +L ++L+HN L L DL TPL L+ + L N + +
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297
Query: 380 IYVGFNTMDL 389
+++ + D+
Sbjct: 298 LWLSWWIKDM 307
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 275 NQFSSV---RRGALAGLDKLTS----LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
NQFS V R+ D +++ L+ H NQI +++ +SF+ L L L L+ N I
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
+ + L+NL TL+L N L + L L+EL L +N I P
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L L L ++ N S++R G+ GL L L +QI V+E ++F N+
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 54/263 (20%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L + ++ I GAF GL+S L L L +N L+V+P+ A L+ L L L +N +
Sbjct: 104 LQLGRNSIRQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIES 161
Query: 183 LENTSFKGLSSLNFLDLS-YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRS 241
+ + +F + SL LDL KL +S+ L L+ L L G+ +
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL--------------GMCN 207
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
+ D+ P+ P L L+ L ++ N F +R G+ GL L L ++Q+
Sbjct: 208 IKDM------------PNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361
++E ++F L++L L+LAHN L +L DL TPL+
Sbjct: 255 SLIERNAFDGLASLVELNLAHNN------------------------LSSLPHDLFTPLR 290
Query: 362 SLQELRLDDNDISMEPECIYVGF 384
L EL L N + + + +++ +
Sbjct: 291 YLVELHLHHNPWNCDCDILWLAW 313
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
LSSLK L + ++Q S + R A GL L L+ HN + L F+
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 101/237 (42%), Gaps = 6/237 (2%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
GA + + P P L VP P A R+ L N++ + SF+ +L
Sbjct: 3 GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQ--RIFLHGNRISHVPAASFRACRNLT 58
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV-VAALQGLRSVTDLDLSHNLLAG 254
L L N L + L L L L N SV A GL + L L L
Sbjct: 59 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 117
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
LGP L++L+ L + N ++ L LT L H N+I + + +FR L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 177
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L L NR+ V + L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
P + R+ L GNR++ A+ + R++T L L N+LA + + L+ L+ L ++
Sbjct: 30 PAASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLS 87
Query: 274 HN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
N Q SV GL +L +L + L FR L+ L +L L N + A+ +
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 147
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L NLT L L N + ++ + L SL L L N ++
Sbjct: 148 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 101/237 (42%), Gaps = 6/237 (2%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
GA + + P P L VP P A R+ L N++ + SF+ +L
Sbjct: 4 GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQ--RIFLHGNRISHVPAASFRACRNLT 59
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV-VAALQGLRSVTDLDLSHNLLAG 254
L L N L + L L L L N SV A GL + L L L
Sbjct: 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
LGP L++L+ L + N ++ L LT L H N+I + + +FR L +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L L NR+ V + L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
P + R+ L GNR++ A+ + R++T L L N+LA + + L+ L+ L ++
Sbjct: 31 PAASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLS 88
Query: 274 HN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
N Q SV GL +L +L + L FR L+ L +L L N + A+ +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L NLT L L N + ++ + L SL L L N ++
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 3/173 (1%)
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA 284
N + V +Q L +V L L N L S + L++L L + NQ S+ G
Sbjct: 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
L L L NQ+ L D F L+ L++L+LAHN++ ++ L+NLT LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
S+N L++L + + L L++LRL N + P+ ++ ++ ++ W
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 60 KNDLCACDLPHTLRCTANKSDLYAISESLRGLE--PDER-VSLLDCTLSNVTVLPGKFLE 116
+N+L + D + AN SD+ +S++G++ P+ R ++L L +++ L E
Sbjct: 37 QNELNSID-----QIIANNSDI----KSVQGIQYLPNVRYLALGGNKLHDISALK----E 83
Query: 117 GVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176
L L+++ +L+++ +G F L++ L+ L L N L +P L NL L+L+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLT-NLTYLNLA 141
Query: 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
HNQL L F L++L LDLSYN+L +L + L L+ LRL N+L
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 76/174 (43%), Gaps = 6/174 (3%)
Query: 161 SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
SAL L NL L L+ NQL L N F L++L L L N+L +L L L
Sbjct: 79 SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L L N+L L ++T+LDLS+N L L +L+ LK L + NQ SV
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
G L L + H N D + + LS H+ +V S S+A
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWINKHSGVVRNSAGSVA 246
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L++L L++AHNQ S+ +G L LT L +NQ+ L + F
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L++LK L + NQ S+ G L LT L+ HNQ+ L F
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 9/289 (3%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
LD T ++++ LP + TL LV+S+ + +N+ + S L L + N +
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLEL 341
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLE--NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT 217
+ NL LDLSH+ + + N + LS L L+LSYN+ ++L +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 218 LRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQ 276
L +L L RL V + Q L + L+LSH+LL L +L+ L++ N
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNH 460
Query: 277 FSS---VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
F + +L L +L L + ++ H+F +L ++H+DL+HNR+ + S +L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382
+HL + L+L+ N + + L+ L + + L N + IY
Sbjct: 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L+ S N L ++NT+F L +L FLDL+ ++ + +D L L L N L
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVP--RLSSLKVLSIAHNQFSSVRRGALAGLDK 290
AL G +++ L + G +P +L+ L + N SS++ +K
Sbjct: 98 ETALSGPKALKHLFF---IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 291 LTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
L L +N I L ED S +T L+L N I + + + + S NF
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-----SAVFQSLNF 209
Query: 349 LRALTQDLITPLKSLQE-----------LRLDDNDISMEPECIYVGFNTMDLELI 392
TQ+L+ K L+ +DD DIS ++ G M +E I
Sbjct: 210 --GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS---PAVFEGLCEMSVESI 259
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
+ L N+L + + + L NL LDL+ Q+Y + +F+ L+ L L+ N L+
Sbjct: 36 ECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS 265
+++ L+ L+ L ++ L +++ L L N ++ P P
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-E 153
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
LKVL +N + + ++ L + T+LS + N D+
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L P+ LDL +N++ ++++ FK L +L+ L L NK+ +S APLV L L L
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 226 NRLT---VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN--QFSSV 280
N+L + LQ LR V + +++ + S L+ + V+ + N + S +
Sbjct: 110 NQLKELPEKMPKTLQELR-VHENEITK------VRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
GA G+ KL+ + I + +L+ L HLD N+I V ASL L+NL
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-HLD--GNKITKVDAASLKGLNNLA 219
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L LS N + A+ + L+EL L++N + P
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 129/301 (42%), Gaps = 49/301 (16%)
Query: 64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVT-VLPGKFLEGVTLHG 122
C C L ++C SDL + + + L PD +LLD + +T + G F LH
Sbjct: 29 CQCHL-RVVQC----SDL-GLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L++ + ++ IS GAF APL L+RL LS NQL +
Sbjct: 81 LILINNKISKISPGAF-------------------------APLV-KLERLYLSKNQLKE 114
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV--AALQGLR 240
L K L L + N++ + + L + V+ L N L S + A QG++
Sbjct: 115 LPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 241 SVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
++ + ++ + +T+P+ SL L + N+ + V +L GL+ L L
Sbjct: 172 KLSYIRIADTNI------TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
N I +++ S L L L +N++V V G LA + + L +N + A+ +
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 359 P 359
P
Sbjct: 285 P 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 21/91 (23%)
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL----------------- 360
LDL +N+I + +L NL TL L +N + ++ PL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 361 ----KSLQELRLDDNDISMEPECIYVGFNTM 387
K+LQELR+ +N+I+ + ++ G N M
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQM 147
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L P+ LDL +N++ ++++ FK L +L+ L L NK+ +S APLV L L L
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 226 NRLT---VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN--QFSSV 280
N+L + LQ LR V + +++ + S L+ + V+ + N + S +
Sbjct: 110 NQLKELPEKMPKTLQELR-VHENEITK------VRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
GA G+ KL+ + I + +L+ L HLD N+I V ASL L+NL
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-HLD--GNKITKVDAASLKGLNNLA 219
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L LS N + A+ + L+EL L++N + P
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 129/301 (42%), Gaps = 49/301 (16%)
Query: 64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVT-VLPGKFLEGVTLHG 122
C C L ++C SDL + + + L PD +LLD + +T + G F LH
Sbjct: 29 CQCHL-RVVQC----SDL-GLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L++ + ++ IS GAF APL L+RL LS NQL +
Sbjct: 81 LILINNKISKISPGAF-------------------------APLV-KLERLYLSKNQLKE 114
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV--AALQGLR 240
L K L L + N++ + + L + V+ L N L S + A QG++
Sbjct: 115 LPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 241 SVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
++ + ++ + +T+P+ SL L + N+ + V +L GL+ L L
Sbjct: 172 KLSYIRIADTNI------TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
N I +++ S L L L +N++V V G LA + + L +N + A+ +
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 359 P 359
P
Sbjct: 285 P 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 21/91 (23%)
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL----------------- 360
LDL +N+I + +L NL TL L +N + ++ PL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 361 ----KSLQELRLDDNDISMEPECIYVGFNTM 387
K+LQELR+ +N+I+ + ++ G N M
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQM 147
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA 284
N + V +Q L +V L L N L S + L++L L + NQ S+ G
Sbjct: 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
L L L NQ+ L D F L+ L++L L HN++ ++ L+NLT LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY 381
+N L++L + + L L++L L+DN + P+ ++
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L +R L L GN+L ++AL+ L ++T L L+ N L L +L++LK L +
Sbjct: 62 LPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVE 118
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
NQ S+ G L LT L +HNQ+ L F L+ L+ LDL +N++ ++
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L+ L L L+ N L+++ + L SL + L +N
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 161 SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
SAL L NL L L+ NQL L N F L++L L L N+L +L L L
Sbjct: 79 SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L L N+L L ++T LDL +N L L +L+ LK LS+ NQ SV
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 281 RRGALAGLDKLTSLS 295
G D+LTSL+
Sbjct: 197 PDGV---FDRLTSLT 208
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 60 KNDLCACDLPHTLRCTANKSDLYAISESLRGLE--PDER-VSLLDCTLSNVTVLPGKFLE 116
+N+L + D + AN SD+ +S++G++ P+ R ++L L +++ L E
Sbjct: 37 QNELNSID-----QIIANNSDI----KSVQGIQYLPNVRYLALGGNKLHDISALK----E 83
Query: 117 GVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176
L L+++ +L+++ +G F L++ L+ L L N L +P L NL L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTN-LKELVLVENQLQSLPDGVFDKLT-NLTYLYLY 141
Query: 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL 236
HNQL L F L++L LDL N+L +L + L L+ L L N+L
Sbjct: 142 HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 237 QGLRSVTDLDLSHN 250
L S+T + L +N
Sbjct: 202 DRLTSLTHIWLLNN 215
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L++L L + HNQ S+ +G L LT L +NQ+ L + F
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L++LK L + NQ S+ G L LT L +HNQ+ L F
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 3/275 (1%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
V PG F L L + S LK I G F GLS+ L L + N + ++ L
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLY 128
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
NL L++ N L + + +F GL+SL L L L ++ + L+ L L VLRL+
Sbjct: 129 -NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+ + + L + L++SH + P+ + L +L LSI H ++V A+
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRH 246
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L L L+ +N I +E L L + L ++ V + L+ L L++S N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 348 FLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382
L L + + + +L+ L LD N ++ + ++V
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 9/276 (3%)
Query: 116 EGVTLHGLVISSGE--LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173
EG+ ++ G+ +K ++ F L+ L L N++S V A L NL L
Sbjct: 28 EGIPTETRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVSAVEPGAFNNLF-NLRTL 85
Query: 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV 233
L N+L + F GLS+L LD+S NK++ L L L+ L + N L
Sbjct: 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145
Query: 234 AALQGLRSVTDLDLSH-NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
A GL S+ L L NL + P + L L VL + H +++R + L +L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 293 SLSCHH-NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
L H +D + + L+ L+ L + H + AV ++ HL L L+LS+N +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 352 LTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTM 387
+ ++ L LQE++L +++ + G N +
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 5/218 (2%)
Query: 107 VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
V +L F + L L + +L IS AF GL+S L+ L L L+ +PT AL+ L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSHL 175
Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-YNKLMTLSQDCLAPLVTLRVLRLQG 225
L L L H + + + SFK L L L++S + L T++ +CL L L L +
Sbjct: 176 H-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITH 233
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
LT A++ L + L+LS+N ++ G S + L L+ + + Q + V A
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAF 292
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
GL+ L L+ NQ+ LE+ F ++ L L L N
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P +P + ++L + N+ ++ + A L L + N + +E +F L L
Sbjct: 27 PEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L L NR+ + LSNLT LD+S N + L + L +L+ L + DND+
Sbjct: 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
Query: 378 ECIYVGFNTMD 388
+ G N+++
Sbjct: 145 HRAFSGLNSLE 155
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 233 VAALQGLRSVTDL-DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
VA +G+ + T L DL N + L L+ L + N S+V GA L L
Sbjct: 24 VAVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
+L N++ ++ F LS L+ LD++ N+IV + L NL +L++ N L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142
Query: 352 LTQDLITPLKSLQELRLDDNDISMEP 377
++ + L SL++L L+ +++ P
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIP 168
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 79 SDLYAIS-ESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVI---SSGELKNIS 134
+DL IS + GL E+++L C N+T +P + L LHGL++ + I
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKC---NLTSIPTEALS--HLHGLIVLRLRHLNINAIR 192
Query: 135 DGAFIGLSSPLQALGLPN-NLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS 193
D +F L L+ L + + L + + L L NL L ++H L + + + L
Sbjct: 193 DYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAVRHLVY 249
Query: 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
L FL+LSYN + T+ L L+ L+ ++L G +L V A +GL + L++S N L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL-AGP 255
LDL NKL +L L LR+L L N+L + L+++ L ++ N L A P
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
+G +L +L L + NQ S+ L KLT LS +N++ L F L++L
Sbjct: 102 IG--VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L +N++ V + L+ L TL L +N L+ + + L+ L+ L+L +N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 74 CTANKSDLYAISESLRGLEPD--ERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGEL 130
C NK+ + S+ L + + LD + ++ LP K +T L L ++ +L
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
+ + G F L + L+ L + +N L +P L NL L L NQL L F
Sbjct: 74 QTLPAGIFKELKN-LETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDS 131
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
L+ L +L L YN+L +L + L +L+ LRL N+L A
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD------------- 178
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+L+ LK L + +NQ V GA L+KL L N D
Sbjct: 179 ------------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L+SLK L + +NQ V GA L +L +L +NQ+ + + +F ++
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ LK L + +NQ V GA L+KL L N D
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L VP+ + + ++LDL L L + +F+GL+ L +L+L YN+L TLS
Sbjct: 26 LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L L L N+L + L + L L N L L RL+ LK L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
NQ S+ GA L L +LS NQ+ + +F L L + L N+
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L LQ L A +GL +T L+L +N L L L+ L L +A+NQ +S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
G L +L L NQ+ L F L+ L L L N++ ++ + L+NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
TL LS N L+++ L LQ + L N F+ E++Y W
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ-----------FDCSRCEILYLSQW 204
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
PS +P + + L + +++ GL KLT L+ +NQ+ L F L+ L
Sbjct: 30 PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L LA+N++ ++ HL+ L L L N L++L + L L+ELRL+ N + P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 378 ECIY 381
+
Sbjct: 148 AGAF 151
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 29/217 (13%)
Query: 86 ESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPL 145
E++ G +E +DC ++ +P L + S L +SD F GL+ L
Sbjct: 5 ETVTGCTCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTK-L 61
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
L L N L + L L L L++NQL L F L+ L+ L L N+L
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS 265
+L L L+ LRL N+L A +L+
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-------------------------KLT 155
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L VP+ + + ++LDL L L + +F+GL+ L +L+L YN+L TLS
Sbjct: 26 LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L L L N+L + L + L L N L L RL+ LK L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
NQ S+ GA L L +LS NQ+ + +F L L + L N+
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L LQ L A +GL +T L+L +N L L L+ L L +A+NQ +S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
G L +L L NQ+ L F L+ L L L N++ ++ + L+NL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
TL LS N L+++ L LQ + L N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
PS +P + + L + +++ GL KLT L+ +NQ+ L F L+ L
Sbjct: 30 PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L LA+N++ ++ HL+ L L L N L++L + L L+ELRL+ N + P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 378 ECIY 381
+
Sbjct: 148 AGAF 151
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 29/217 (13%)
Query: 86 ESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPL 145
E++ G +E +DC ++ +P L + S L +SD F GL+ L
Sbjct: 5 ETVTGCTCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTK-L 61
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
L L N L + L L L L++NQL L F L+ L+ L L N+L
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS 265
+L L L+ LRL N+L A +L+
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-------------------------KLT 155
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
LDL LA L +T L+ L L++ +NQ ++ G L +L +L +NQ+ L
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
F L+ L L L N++ ++ L+ L L L+ N L+++ L +LQ
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 365 ELRLDDNDISMEPECIY 381
L L N + P +
Sbjct: 159 TLSLSTNQLQSVPHGAF 175
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 143/353 (40%), Gaps = 92/353 (26%)
Query: 113 KFLEGVTLHGLVISSGELKNISDGAF--IGL------------------------SSPLQ 146
+FL +L L +SS LK S G F IG ++ +Q
Sbjct: 166 EFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQ 225
Query: 147 ALGLPNNLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
L L NN L S + L NL +LDLS+N L+ + N SF L SL +L L YN +
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 206 TLSQDCLAPLVTLRVLRLQG--NRLTVSVVA-------ALQGLRSVTDLDLSHNLLAGPL 256
LS L LR L L+ + +VS+ + + Q L+ + L++ N +
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST- 344
Query: 257 GPSTVPRLSSLKVL------------------SIAH----------NQFSSVRRGALAGL 288
+T L SLK L S+AH N S + G + L
Sbjct: 345 KSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWL 404
Query: 289 DKLTSLSCHHNQID-VLEDHSFRALSTLSHLDLAHNRIVAVSGASLA------------- 334
+L L N+I+ L +R L + + L++N+ + +S +S A
Sbjct: 405 GQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRV 464
Query: 335 -------------HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L NLT LDLS+N + + +DL+ L++L+ L N+++
Sbjct: 465 ALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 108/239 (45%), Gaps = 9/239 (3%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L N+ L+L+HNQL +L T+F S L LD +N + L + L L+VL LQ
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N L+ ++T+LDL N + + + +L L ++HN SS + G
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
L+ L L N+I L E+ F S+L LDL+ N + S + L L
Sbjct: 142 VQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 344 LSHNFLRA-LTQDLITPLK--SLQELRLDDNDISMEPECIYVGF---NTMDLELIYSGV 396
L++ L LT+ L L S+Q L L +N + E + G N L+L Y+ +
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 40/334 (11%)
Query: 79 SDLYAISES-LRGLEPDERVSLLDCTLSNV-TVLPGKFLEGVTLHGLVISSGELKNISDG 136
+ L A SES GL+ ++ LD + +N+ V G F +L L + ++ +S
Sbjct: 232 NQLLATSESTFSGLKW-TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD-----------RLDLSHNQLYKLEN 185
+F GLS+ L+ L L + S PN+D L++ N + ++
Sbjct: 291 SFYGLSN-LRYLSLKR---AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKS 346
Query: 186 TSFKGLSSLNFLDLS--YNKLMTLSQDCL-----APLVTLRVLRLQGNRLTVSVVAALQG 238
+F GL SL +L LS + L TL+ + +PL+TL + + +++ + L
Sbjct: 347 NTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQ 406
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
LR LDL N + L L ++ + +++N++ + + A + L L
Sbjct: 407 LRI---LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 299 ---NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ- 354
+D+ FR L L+ LDL++N I ++ L L NL LD HN L L +
Sbjct: 464 VALKNVDI-SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 355 -------DLITPLKSLQELRLDDNDISMEPECIY 381
+ + L L L L+ N + P ++
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVF 556
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 137/351 (39%), Gaps = 67/351 (19%)
Query: 96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL 155
R ++ DC+ +T +P +T+ L ++ +L+ + F S L L N +
Sbjct: 5 RYNVADCSHLKLTHIPDDLPSNITV--LNLTHNQLRRLPPTNFTRYSQ-LAILDAGFNSI 61
Query: 156 SVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL 215
S + L + P L L+L HN+L ++ + +F ++L LDL N + + +
Sbjct: 62 SKL-EPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQ 120
Query: 216 VTLRVLRLQGNRLTVSVVA-------------------ALQ-------GLRSVTDLDLSH 249
L L L N L+ + + AL+ G S+ LDLS
Sbjct: 121 KNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSS 180
Query: 250 NLLA--------------------GPLGPSTVPRL------SSLKVLSIAHNQFSSVRRG 283
N L L P +L +S++ LS+A+NQ +
Sbjct: 181 NPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSES 240
Query: 284 ALAGLD--KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 341
+GL LT L +N + + + SF L +L +L L +N I +S S LSNL
Sbjct: 241 TFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRY 300
Query: 342 LDLSHNFLRALTQDLITP---------LKSLQELRLDDNDISMEPECIYVG 383
L L F + P LK L+ L +DDN+I + G
Sbjct: 301 LSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 119 TLHGLVISSGELKN--ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176
+L L++ LKN IS F L + L L L NN ++ + L L NL+ LD
Sbjct: 455 SLQRLMLRRVALKNVDISPSPFRPLRN-LTILDLSNNNIANINEDLLEGLE-NLEILDFQ 512
Query: 177 HNQLYKLENTS--------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
HN L +L + KGLS L+ L+L N L + L L+ + L N L
Sbjct: 513 HNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNL 572
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
S+ L+L NL+ P +L L + N F
Sbjct: 573 NKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPF 621
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 99/245 (40%), Gaps = 54/245 (22%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L VP ++P+ LDL +N + +L FKGL L L L NK+ + + +P
Sbjct: 45 LKAVPKE----ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L+ L + N L V + P +P SSL L I
Sbjct: 101 LRKLQKLYISKNHL-VEI-------------------------PPNLP--SSLVELRIHD 132
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRAL-------------------- 312
N+ V +G +GL + + N ++ E +F L
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
TL+ L L HN+I A+ L S L L L HN +R + ++ L +L+EL LD+N
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 373 ISMEP 377
+S P
Sbjct: 253 LSRVP 257
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
T L +N I L F+ L L L L +N+I + + + L L L +S N L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 352 LTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
+ +L + SL ELR+ DN I P+ ++ G M+
Sbjct: 117 IPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMN 150
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 139/351 (39%), Gaps = 73/351 (20%)
Query: 111 PGKFLEGVTLHGL------VISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVVPTSAL 163
PG + T GL + + + GAF GL++ L+ L L NL V +
Sbjct: 66 PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNF 124
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFK-GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222
+L+ L L N + K++ SF + + LDL++NK+ ++ ++ L L
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--------LN 176
Query: 223 LQGNRLTVSVVAA--LQGLR----------------SVTDLDLSHNLLAGPLGPSTVPRL 264
QG T+ +++ LQ + S+T LDLS N + +
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236
Query: 265 SSLKVLSI------------AHNQFSSVRRGALAGLD----------------------- 289
+ K+ S+ H F GL+
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296
Query: 290 ---KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
L L+ N+I+ ++D++F L+ L L+L+ N + ++ +L L LDLS+
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
N +RAL L +L+EL LD N + P+ I+ ++ +++ W
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 87 SLRGLEPDERVSLLDCTLSNV-TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPL 145
+ +GLE V D + S + +L F L L ++ E+ I D AF GL+ L
Sbjct: 268 TFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
+ L L N L + + L L+ LDLS+N + L + SF GL +L L L N+L
Sbjct: 327 K-LNLSQNFLGSIDSRMFENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 206 TLSQDCLAPLVTLRVLRLQGN 226
++ L +L+ + L N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253
+N++DLS N + L++ + L L+ L+++ + L + +N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVE---------------QQTPGLVIRNNTFR 76
Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRA 311
G LSSL +L + +NQF + GA GL L L+ +D VL + F+
Sbjct: 77 G---------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 312 LSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQD 355
L++L L L N I + AS ++ LDL+ N ++++ ++
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV 233
DLS ++++ L + F + L L L+ N++ + + L L L L N L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 234 AALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTS 293
+ L + LDLS+N + LG + L +LK L++ NQ SV G L L
Sbjct: 341 RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399
Query: 294 LSCHHNQID 302
+ H N D
Sbjct: 400 IWLHTNPWD 408
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQ 224
L +++ +DLS N + +L TSF L L FL + + + + L +L +L+L
Sbjct: 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSH-NLLAGPLGPSTVPRLSSLKVLSIAHNQ------- 276
N+ A GL ++ L L+ NL L + L+SL++L + N
Sbjct: 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 277 --FSSVRRGALAGL--DKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGA 331
F ++RR + L +K+ S+ C + ++ H + LS+++ D+ +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSI-CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 332 SLAHLSNLTTLDLSHNFLR 350
+ +++TTLDLS N +
Sbjct: 207 NPFKNTSITTLDLSGNGFK 225
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 126 SSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
SSG L +I G L+ +++L L NN ++ + S L NL L L+ N + +E
Sbjct: 13 SSGSLNSIPSG----LTEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEE 67
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
SF L SL LDLSYN L LS PL +L L L GN +L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--------- 118
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
SH L+ L++L + + + F+ ++R AGL L L + +
Sbjct: 119 -FSH--------------LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 163
Query: 305 EDHSFRALSTLSHL 318
E S +++ +SHL
Sbjct: 164 EPKSLKSIQNVSHL 177
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
++K L +++N+ + + L L +L N I+ +E+ SF +L +L HLDL++N +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 326 VAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDND 372
+S + LS+LT L+L N + L + L + L LQ LR+ + D
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 134
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 293 SLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
SLSC N I S ++ + LDL++NRI +S + L NL L L+ N
Sbjct: 1 SLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 60
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ + +D + L SL+ L L N +S
Sbjct: 61 GINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
+ + SL +N+I + + + L L L N I + S + L +L LDLS+N+
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 349 LRALTQDLITPLKSLQELRL 368
L L+ PL SL L L
Sbjct: 86 LSNLSSSWFKPLSSLTFLNL 105
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 25/179 (13%)
Query: 145 LQALGLPNNLL--SVVPTSALAPLAPNLDRLDLSHNQLYKLENT--SFKGLSSLNFLDLS 200
L+ L L NL+ + SA P+L L L N L LE T + L +L +D+S
Sbjct: 336 LEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDIS 395
Query: 201 YNKLMTLSQDCLAPLVTLRVLRLQGNRL---TVSVVAALQGLR--------------SVT 243
N ++ + C P ++ L L R+ T + L+ L +
Sbjct: 396 KNSFHSMPETCQWP-EKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLK 454
Query: 244 DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+L +S N L S +P L VL I+ NQ SV G L L + H N D
Sbjct: 455 ELYISRNKLMTLPDASLLPML---LVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 126 SSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
SSG L +I G L+ +++L L NN ++ + S L NL L L+ N + +E
Sbjct: 39 SSGSLNSIPSG----LTEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEE 93
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
SF L SL LDLSYN L LS PL +L L L GN
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--------------- 138
Query: 246 DLSHNLLAGPLGPSTV-PRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
LG +++ L+ L++L + + + F+ ++R AGL L L + +
Sbjct: 139 ----------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188
Query: 304 LEDHSFRALSTLSHL 318
E S +++ +SHL
Sbjct: 189 YEPKSLKSIQNVSHL 203
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
++K L +++N+ + + L L +L N I+ +E+ SF +L +L HLDL++N +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 326 VAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDND 372
+S + LS+LT L+L N + L + L + L LQ LR+ + D
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 293 SLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
SLSC N I S ++ + LDL++NRI +S + L NL L L+ N
Sbjct: 27 SLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ + +D + L SL+ L L N +S
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLS 113
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
+ + SL +N+I + + + L L L N I + S + L +L LDLS+N+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 349 LRALTQDLITPLKSLQELRL 368
L L+ PL SL L L
Sbjct: 112 LSNLSSSWFKPLSSLTFLNL 131
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 108/280 (38%), Gaps = 77/280 (27%)
Query: 170 LDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------------- 215
L RLDLS NQ+ L + SF L+SL +D S N++ + + L PL
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 216 -------------------VTLRVLRLQGNRLTVSV----------------------VA 234
+ L +L + GN TV + +
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 235 ALQGLRSVTD----------------LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
A G ++ D LDLSH + L L LKVL++A+N+ +
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKIN 303
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
+ A GLD L L+ +N + L +F L ++++DL N I + + L
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
L TLDL N ALT P S+ ++ L N + P+
Sbjct: 364 LQTLDLRDN---ALTTIHFIP--SIPDIFLSGNKLVTLPK 398
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 26/280 (9%)
Query: 121 HGLVISSGELKNISD---GAFIGLS-SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176
H ++ + NI D F GL+ S ++ L L + + + + L +L L+L+
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLA 298
Query: 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL 236
+N++ K+ + +F GL +L L+LSYN L L L + + LQ N + +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSS----VRRGALAGLDK 290
+ L + LDL N L ++P LS K++++ ++ + L LD
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418
Query: 291 LTS-LSCHHNQIDVLEDHSFRALS---------TLSHLDLAHNRIVAVSGASLAH----- 335
L L H QI +L + F + S +L L L N + L
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 375
LS+L L L+HN+L +L + + L +L+ L L+ N +++
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 29/245 (11%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L ++ ++ I+D AF GL + LQ L L NLL + +S L P + +DL N +
Sbjct: 295 LNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAI 352
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQG 238
+++ +FK L L LDL N L T+ P ++ + L GN+L +++ A L
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIH---FIP--SIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 239 LRS--VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD-KLTSLS 295
L + +LD+ + LL R+ L++L + N+FSS + L L
Sbjct: 408 LSENRLENLDILYFLL----------RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 296 CHHNQIDVLEDHS-----FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
N + + + F LS L L L HN + ++ +HL+ L L L+ N L
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Query: 351 ALTQD 355
L+ +
Sbjct: 518 VLSHN 522
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 86 ESLRGLEPDERVSLLDCTLSNVTVLPGK---FLEG----------VTLHGLVISSGELKN 132
++ + LE + + L D L+ + +P FL G +T + + +S L+N
Sbjct: 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Query: 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS----- 187
+ F+ LQ L L N S P+L++L L N L T
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
F+GLS L L L++N L +L + L LR L L NRLTV L ++ LD+
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDI 533
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
S N L P P SL VL I HN+F
Sbjct: 534 SRNQLLAP-NPDV---FVSLSVLDITHNKF 559
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDL-SYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
+RL LS N + + +SF L L L+L S +T+ ++ L LR+L L +++
Sbjct: 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86
Query: 230 VSVVAALQGLRSVTDLDLSH-NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR-RGALAG 287
A QGL + +L L L L L +L L ++ NQ S+ +
Sbjct: 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLDLAHN----RIVAVSGASLAHLSNLT- 340
L+ L S+ NQI ++ +H L TLS LA N R+ G + N+
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206
Query: 341 ----------TLDLSHNFLRALTQ 354
T+D++ NF A+++
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISK 230
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L LKVL++A+N+ + + A GLD L L+ +N + L +F
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 133/274 (48%), Gaps = 48/274 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L+ L +SS + +IS A GL+S LQ L N + + P + L L +RLD+S N+
Sbjct: 135 LNRLELSSNTISDIS--ALSGLTS-LQQLSFGNQVTDLKPLANLTTL----ERLDISSNK 187
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ + + L++L L + N++ ++ L L L L L GN+L + L L
Sbjct: 188 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 241
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L + N
Sbjct: 242 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN 296
Query: 300 QIDVLEDHS-----------------------FRALSTLSHLDLAHNRIVAVSGASLAHL 336
Q LED S +L+ L L A+N++ VS SLA+L
Sbjct: 297 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS--SLANL 351
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
+N+ L HN + LT + L + +L L+D
Sbjct: 352 TNINWLSAGHNQISDLTP--LANLTRITQLGLND 383
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 132/272 (48%), Gaps = 44/272 (16%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L+ L +SS + +IS A GL+S LQ L N + + P + L L +RLD+S N+
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLNFGNQVTDLKPLANLTTL----ERLDISSNK 183
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ + + L++L L + N++ ++ L L L L L GN+L + L L
Sbjct: 184 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 237
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L + N
Sbjct: 238 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 292
Query: 300 QIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHLSN 338
Q LED S L L++L L N I +S +SLA+L+N
Sbjct: 293 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 349
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
+ L HN + LT + L + +L L+D
Sbjct: 350 INWLSAGHNQISDLTP--LANLTRITQLGLND 379
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 124/255 (48%), Gaps = 42/255 (16%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L+ L +SS + +IS A GL+S LQ L N + + P + L L +RLD+S N+
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLNFGNQVTDLKPLANLTTL----ERLDISSNK 183
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ + + L++L L + N++ ++ L L L L L GN+L + L L
Sbjct: 184 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 237
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L + N
Sbjct: 238 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 292
Query: 300 QIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHLSN 338
Q LED S L L++L L N I +S +SLA+L+N
Sbjct: 293 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 349
Query: 339 LTTLDLSHNFLRALT 353
+ L HN + LT
Sbjct: 350 INWLSAGHNQISDLT 364
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 132/272 (48%), Gaps = 44/272 (16%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L+ L +SS + +IS A GL+S LQ L N + + P + L L +RLD+S N+
Sbjct: 136 LNRLELSSNTISDIS--ALSGLTS-LQQLSFGNQVTDLKPLANLTTL----ERLDISSNK 188
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ + + L++L L + N++ ++ L L L L L GN+L + L L
Sbjct: 189 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 242
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L + N
Sbjct: 243 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN 297
Query: 300 QIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHLSN 338
Q LED S L L++L L N I +S +SLA+L+N
Sbjct: 298 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 354
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
+ L HN + LT + L + +L L+D
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLND 384
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 45/257 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA--PNLDRLDLSH 177
L+ L +SS + +IS A GL+S LQ L +N ++ L PLA L+RLD+S
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLNFSSNQVT-----DLKPLANLTTLERLDISS 182
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
N++ + + L++L L + N++ ++ L L L L L GN+L + L
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLA 236
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
L ++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L +
Sbjct: 237 SLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELN 291
Query: 298 HNQIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHL 336
NQ LED S L L++L L N I +S +SLA+L
Sbjct: 292 ENQ---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Query: 337 SNLTTLDLSHNFLRALT 353
+N+ L HN + LT
Sbjct: 349 TNINWLSAGHNQISDLT 365
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 45/257 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA--PNLDRLDLSH 177
L+ L +SS + +IS A GL+S LQ L +N ++ L PLA L+RLD+S
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLSFSSNQVT-----DLKPLANLTTLERLDISS 182
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
N++ + + L++L L + N++ ++ L L L L L GN+L + L
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLA 236
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
L ++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L +
Sbjct: 237 SLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELN 291
Query: 298 HNQIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHL 336
NQ LED S L L++L L N I +S +SLA+L
Sbjct: 292 ENQ---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Query: 337 SNLTTLDLSHNFLRALT 353
+N+ L HN + LT
Sbjct: 349 TNINWLSAGHNQISDLT 365
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 45/257 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA--PNLDRLDLSH 177
L+ L +SS + +IS A GL+S LQ L +N ++ L PLA L+RLD+S
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLSFSSNQVT-----DLKPLANLTTLERLDISS 182
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
N++ + + L++L L + N++ ++ L L L L L GN+L + L
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLA 236
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
L ++TDLDL++N ++ L P + L+ L L + NQ S++ LAGL LT+L +
Sbjct: 237 SLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELN 291
Query: 298 HNQIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHL 336
NQ LED S L L++L L N I +S +SLA+L
Sbjct: 292 ENQ---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348
Query: 337 SNLTTLDLSHNFLRALT 353
+N+ L HN + LT
Sbjct: 349 TNINWLSAGHNQISDLT 365
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 119 TLHGLVISSGELKNISDGAF------IGL--------------------SSPLQALGLPN 152
+L L +SS ++K S G F GL ++ ++ L L N
Sbjct: 177 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 236
Query: 153 NLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ LS + L NL LDLS+N L + N SF L L + L YN + L
Sbjct: 237 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 296
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAA---------LQGLRSVTDLDLSHNLLAGPLGPSTVP 262
L L +R L L+ + S+ A Q L+ + L++ N + G + +
Sbjct: 297 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFT 355
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSH 317
L +LK LS++ N F+S+R L H N+I +E +F L L
Sbjct: 356 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 414
Query: 318 LDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
LDL N I ++G L N+ + LS+N LT++ + SLQ L L
Sbjct: 415 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 466
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 36/277 (12%)
Query: 130 LKNISDGAFIGLS-SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL-YKLENTS 187
L+ +++ F+ L+ SPL L L N +S + + A + L +L+ LDL N++ +L
Sbjct: 372 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQE 430
Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
++GL ++ + LSYNK + L+++ A + +L+ L L+ AL+ + S
Sbjct: 431 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR--------VALKNVDS------ 476
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 307
PS L +L +L +++N +++ L GL+KL L HN + L H
Sbjct: 477 ---------SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 527
Query: 308 S--------FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
+ + LS L L+L N + L L +DL N L L +
Sbjct: 528 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 587
Query: 360 LKSLQELRLDDNDI-SMEPECIYVGF-NTMDLELIYS 394
SL+ L L N I S+E + F N +L++ ++
Sbjct: 588 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L N+ L+L+HNQL +L +F S L LD+ +N + L + L L+VL LQ
Sbjct: 28 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N L+ ++T+L L N + + + + +L L ++HN SS + G
Sbjct: 88 NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
L+ L L +N+I L E+ A S+L L+L+ N+I S + L L
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 206
Query: 344 LSHNFLR-ALTQDLITPLK--SLQELRLDDNDISMEPECIYVGFNTMDLELI 392
L++ L +LT+ L L S++ L L ++ +S ++G +L ++
Sbjct: 207 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 258
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 170 LDRLDLSHNQLYKLENTS--------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL 221
L+ LDL HN L +L + KGLS L+ L+L N + + L L+++
Sbjct: 511 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 570
Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L N L + S+ L+L NL+ P +L L + N F
Sbjct: 571 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 36/193 (18%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
+P R + L + S +P +++LD + +N+ + LEG+
Sbjct: 458 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--------- 508
Query: 128 GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS 187
L+ L L +N L+ + A P P LSH + LE+
Sbjct: 509 ---------------EKLEILDLQHNNLARLWKHA-NPGGPIYFLKGLSHLHILNLESNG 552
Query: 188 --------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG- 238
FK L L +DL N L TL V+L+ L LQ N +T SV + G
Sbjct: 553 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGP 611
Query: 239 -LRSVTDLDLSHN 250
R++T+LD+ N
Sbjct: 612 AFRNLTELDMRFN 624
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 119 TLHGLVISSGELKNISDGAF------IGL--------------------SSPLQALGLPN 152
+L L +SS ++K S G F GL ++ ++ L L N
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 153 NLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ LS + L NL LDLS+N L + N SF L L + L YN + L
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAA---------LQGLRSVTDLDLSHNLLAGPLGPSTVP 262
L L +R L L+ + S+ A Q L+ + L++ N + G + +
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFT 350
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSH 317
L +LK LS++ N F+S+R L H N+I +E +F L L
Sbjct: 351 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 318 LDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
LDL N I ++G L N+ + LS+N LT++ + SLQ L L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 36/277 (12%)
Query: 130 LKNISDGAFIGLS-SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL-YKLENTS 187
L+ +++ F+ L+ SPL L L N +S + + A + L +L+ LDL N++ +L
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQE 425
Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
++GL ++ + LSYNK + L+++ A + +L+ L L+ AL+ + S
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR--------VALKNVDS------ 471
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 307
PS L +L +L +++N +++ L GL+KL L HN + L H
Sbjct: 472 ---------SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 308 S--------FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
+ + LS L L+L N + L L +DL N L L +
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582
Query: 360 LKSLQELRLDDNDI-SMEPECIYVGF-NTMDLELIYS 394
SL+ L L N I S+E + F N +L++ ++
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L N+ L+L+HNQL +L +F S L LD+ +N + L + L L+VL LQ
Sbjct: 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N L+ ++T+L L N + + + + +L L ++HN SS + G
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
L+ L L +N+I L E+ A S+L L+L+ N+I S + L L
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 344 LSHNFLR-ALTQDLITPLK--SLQELRLDDNDISMEPECIYVGFNTMDLELI 392
L++ L +LT+ L L S++ L L ++ +S ++G +L ++
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 170 LDRLDLSHNQLYKLENTS--------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL 221
L+ LDL HN L +L + KGLS L+ L+L N + + L L+++
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L N L + S+ L+L NL+ P +L L + N F
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 36/193 (18%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
+P R + L + S +P +++LD + +N+ + LEG+
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--------- 503
Query: 128 GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS 187
L+ L L +N L+ + A P P LSH + LE+
Sbjct: 504 ---------------EKLEILDLQHNNLARLWKHA-NPGGPIYFLKGLSHLHILNLESNG 547
Query: 188 --------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG- 238
FK L L +DL N L TL V+L+ L LQ N +T SV + G
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGP 606
Query: 239 -LRSVTDLDLSHN 250
R++T+LD+ N
Sbjct: 607 AFRNLTELDMRFN 619
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L N LS +P P L L +S+N L ++E+ +F+ +SL L LS N+L
Sbjct: 119 LTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+ + L V + ++++ L +V +LD SHN + GP V
Sbjct: 178 THVDLSLIPSLFHANV--------SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV--- 226
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
L +L + HN + L L + +N+++ + H F + L L +++NR
Sbjct: 227 -ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
+VA++ + L LDLSHN L + ++ L+ L LD N I
Sbjct: 284 LVALNLYGQP-IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI 330
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L P + L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
+L L+ NR+ V L+ + +L ++S+N L L
Sbjct: 168 QNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
+++L++ Q + A A + L N I L H F+ + L+ L L N
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN-----DISMEPE 378
+ ++ + LTTL +S+N L + D SLQ L+L N D+S+ P
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187
Query: 379 CIY--VGFNTMDLELIYSGVWRHSTLLIPVMLS 409
+ V +N + STL IP+ +
Sbjct: 188 LFHANVSYNLL------------STLAIPIAVE 208
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 647 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
L VL + N SS+ RG KLT+LS +N ++ +ED +F
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 630 SDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
S++R V L + +LKVL ++HN V R D+L +L HN I L+
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK 334
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 119 TLHGLVISSGELKNISDGAF------IGL--------------------SSPLQALGLPN 152
+L L +SS ++K S G F GL ++ ++ L L N
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 241
Query: 153 NLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ LS + L NL LDLS+N L + N SF L L + L YN + L
Sbjct: 242 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 301
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAA---------LQGLRSVTDLDLSHNLLAGPLGPSTVP 262
L L +R L L+ + S+ A Q L+ + L++ N + G + +
Sbjct: 302 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFT 360
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSH 317
L +LK LS++ N F+S+R L H N+I +E +F L L
Sbjct: 361 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 419
Query: 318 LDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
LDL N I ++G L N+ + LS+N LT++ + SLQ L L
Sbjct: 420 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 471
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 36/277 (12%)
Query: 130 LKNISDGAFIGLS-SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL-YKLENTS 187
L+ +++ F+ L+ SPL L L N +S + + A + L +L+ LDL N++ +L
Sbjct: 377 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQE 435
Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
++GL ++ + LSYNK + L+++ A + +L+ L L+ AL+ + S
Sbjct: 436 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR--------VALKNVDS------ 481
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 307
PS L +L +L +++N +++ L GL+KL L HN + L H
Sbjct: 482 ---------SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 532
Query: 308 S--------FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
+ + LS L L+L N + L L +DL N L L +
Sbjct: 533 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 592
Query: 360 LKSLQELRLDDNDI-SMEPECIYVGF-NTMDLELIYS 394
SL+ L L N I S+E + F N +L++ ++
Sbjct: 593 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L N+ L+L+HNQL +L +F S L LD+ +N + L + L L+VL LQ
Sbjct: 33 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N L+ ++T+L L N + + + + +L L ++HN SS + G
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
L+ L L +N+I L E+ A S+L L+L+ N+I S + L L
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 211
Query: 344 LSHNFLR-ALTQDLITPLK--SLQELRLDDNDISMEPECIYVGFNTMDLELI 392
L++ L +LT+ L L S++ L L ++ +S ++G +L ++
Sbjct: 212 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 263
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 170 LDRLDLSHNQLYKLENTS--------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL 221
L+ LDL HN L +L + KGLS L+ L+L N + + L L+++
Sbjct: 516 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 575
Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L N L + S+ L+L NL+ P +L L + N F
Sbjct: 576 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 36/193 (18%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
+P R + L + S +P +++LD + +N+ + LEG+
Sbjct: 463 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--------- 513
Query: 128 GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS 187
L+ L L +N L+ + A P P LSH + LE+
Sbjct: 514 ---------------EKLEILDLQHNNLARLWKHA-NPGGPIYFLKGLSHLHILNLESNG 557
Query: 188 --------FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG- 238
FK L L +DL N L TL V+L+ L LQ N +T SV + G
Sbjct: 558 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGP 616
Query: 239 -LRSVTDLDLSHN 250
R++T+LD+ N
Sbjct: 617 AFRNLTELDMRFN 629
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKG--------LSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
P+L+ LDLS N L SFKG +SL +LDLS+N ++T+S + L L L
Sbjct: 347 PSLEFLDLSRNGL------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 399
Query: 220 VLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF- 277
L Q + L +S + LR++ LD+SH LSSL+VL +A N F
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQ 458
Query: 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
+ L LT L Q++ L +F +LS+L L++A N++ +V L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518
Query: 338 NLTTLDLSHN 347
+L + L N
Sbjct: 519 SLQKIWLHTN 528
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 170 LDRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
L+ LD H+ L ++ E + F L +L +LD+S+ L +L VL++ GN
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 229 TVSVVAAL-QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+ + + LR++T LDLS L L P+ LSSL+VL++A NQ SV G
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Query: 288 LDKLTSLSCHHNQID 302
L L + H N D
Sbjct: 517 LTSLQKIWLHTNPWD 531
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 24/156 (15%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
+ A GL S+ L LA L + L +LK L++AHN S +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFK----------- 140
Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
L ++ F L+ L HLDL+ N+I ++
Sbjct: 141 -----------LPEY-FSNLTNLEHLDLSSNKIQSI 164
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLS ++ +E+ +++ LS L+ L L+ N + +L+ + L +L+ L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L + L+++ +L+++HNL+ P L++L+ L ++ N+ S+
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 83 AISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLS 142
+S + GLE E + L ++ FL L L IS + +G F GLS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S L+ L + N + NL LDLS QL +L T+F LSSL L+++ N
Sbjct: 446 S-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGN 226
+L ++ L +L+ + L N
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK- 124
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 125 ---TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L N LS +P P L L +S+N L ++E+ +F+ +SL L LS N+L
Sbjct: 125 LTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+ + L V + ++++ L +V +LD SHN + GP V
Sbjct: 184 THVDLSLIPSLFHANV--------SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV--- 232
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
L +L + HN + L L + +N+++ + H F + L L +++NR
Sbjct: 233 -ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
+VA++ + L LDLSHN L + ++ L+ L LD N I
Sbjct: 290 LVALNLYGQP-IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI 336
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L P + L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
+L L+ NR+ V L+ + +L ++S+N L L
Sbjct: 174 QNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
+++L++ Q + A A + L N I L H F+ + L+ L L N
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN-----DISMEPE 378
+ ++ + LTTL +S+N L + D SLQ L+L N D+S+ P
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193
Query: 379 CIY--VGFNTMDLELIYSGVWRHSTLLIPVMLS 409
+ V +N + STL IP+ +
Sbjct: 194 LFHANVSYNLL------------STLAIPIAVE 214
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 647 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
L VL + N SS+ RG KLT+LS +N ++ +ED +F
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P R+ +L +R ++ + L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYT--RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N++ + L L NL TL L N L + +
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+NQ + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N ++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 100 LDCTLSNVTVLP--GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV 157
LD + + + LP G+ L +T+ L +S L ++ GA GL LQ L L N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKT 138
Query: 158 VPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
+P L P P L++L L++NQL +L GL +L+ L L N L T+ +
Sbjct: 139 LPPGLLTP-TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
TL L P L L L N+LT L GL ++ L L N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P R+ +L +R ++ + L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYT--RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N++ + L L NL TL L N L + +
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+NQ + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N ++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 100 LDCTLSNVTVLP--GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV 157
LD + + + LP G+ L +T+ L +S L ++ GA GL LQ L L N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKT 138
Query: 158 VPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
+P L P P L++L L++NQL +L GL +L+ L L N L T+ +
Sbjct: 139 LPPGLLTP-TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
TL L P L L L N+LT L GL ++ L L N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L +R ++ + L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N++ + L L NL TL L N L + +
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+NQ + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N ++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 100 LDCTLSNVTVLP--GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV 157
LD + + + LP G+ L +T+ L +S L ++ GA GL LQ L L N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKT 138
Query: 158 VPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
+P L P P L++L L++NQL +L GL +L+ L L N L T+ +
Sbjct: 139 LPPGLLTP-TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
TL L P L L L N+LT L GL ++ L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L +R ++ + L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N++ + L L NL TL L N L + +
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+NQ + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N ++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 100 LDCTLSNVTVLP--GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV 157
LD + + + LP G+ L +T+ L +S L ++ GA GL LQ L L N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKT 138
Query: 158 VPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
+P L P P L++L L++NQL +L GL +L+ L L N L T+ +
Sbjct: 139 LPPGLLTP-TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
TL L P L L L N+LT L GL ++ L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L LT V L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N + + L L NL TL L N L + +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+N + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N+++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
TL L P L L L N LT L GL ++ L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L LT V L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N + + L L NL TL L N L + +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+N + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N+++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
TL L P L L L N LT L GL ++ L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L LT V L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N + + L L NL TL L N L + +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+N + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N+++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
TL L P L L L N LT L GL ++ L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L NN +V+ + + P L +++ S+N++ +E +F+G S +N + L+ N+L +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
L +L+ L L+ NR+T + GL SV L L N + + P L SL
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSL 155
Query: 268 KVLSIAHNQFS 278
L++ N F+
Sbjct: 156 STLNLLANPFN 166
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 221 LRLQGNRLTV-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
LRL N TV + L + ++ S+N + + S + + + N+ +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339
V+ GL+ L +L N+I + + SF LS++ L L N+I V+ + L +L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 340 TTLDLSHN 347
+TL+L N
Sbjct: 156 STLNLLAN 163
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
P +P+ ++ L + +N+F+ + G L +L ++ +N+I +E+ +F S ++
Sbjct: 27 PEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
+ L NR+ V L +L TL L N + + D L S++ L L DN I+
Sbjct: 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L +R ++ + L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N + + L L NL TL L N L + +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+N + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N+++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
TL L P L L L N LT L GL ++ L L N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L +R ++ + L + LDLSHN L P
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 94
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 95 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N + + L L NL TL L N L + +
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 78 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+N + + G L G
Sbjct: 137 LKT-------------------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 171
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 172 LENLDTLLLQENSLYTIPKGFF 193
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 80 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +N+++ P + G +D
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 80 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
TL L P L L L N LT L GL ++ L L N
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 183
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 25/290 (8%)
Query: 96 RVSLLDCTLSNVTVLPGKFLEGV-TLHGLVISSG---ELKNISDGAFIGLSSPLQALGLP 151
RV LD T +++ LP +EG+ +L LV+++ +L I+ +F L+ L +
Sbjct: 278 RVQELDLTAAHLNGLPSG-IEGMNSLKKLVLNANSFDQLCQINAASF----PSLRDLYIK 332
Query: 152 NNLLSV-VPTSALAPLAPNLDRLDLSHNQLYKLE--NTSFKGLSSLNFLDLSYNKLMTLS 208
N+ + + T L L NL +LDLSH+ + + N K L L +L+LSYN+ + L
Sbjct: 333 GNMRKLDLGTRCLEKLE-NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
Query: 209 QDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
L +L + L V + Q L + L+LSH LL + L L
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS-NQHLLAGLQDL 450
Query: 268 KVLSIAHNQF--SSVRRGAL----AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
+ L++ N F S+ + L L+ L SC+ ID +F L ++HLDL+
Sbjct: 451 RHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID---QQAFHGLRNVNHLDLS 507
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
HN + S +L+HL L L+++ N +R + L+ L + L N
Sbjct: 508 HNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L+ S N L ++NT+F L +L FLDL+ ++ + +D L + L GN L
Sbjct: 37 LEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMA 96
Query: 233 VAALQG------------------------LRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268
+L G L ++ L L N ++ P P +LK
Sbjct: 97 ETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNLK 155
Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
VL +N + R L++ T+LS + N D+
Sbjct: 156 VLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDI 190
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 158 VPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT 217
+ + L + +L+ L LS L ++ +F GL ++N LDLS+N L S D L+ L
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
L L + N + + L L + ++LSHN L
Sbjct: 525 L-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
L LS N L T S L P L L L +R ++ + L + LDLSHN L P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L T+P +L VL ++ N+ +S+ GAL GL +L L N++ L L
Sbjct: 94 LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L LA+N + + L L NL TL L N L + +
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N L+
Sbjct: 79 LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
L L+TP L++L L +ND++ P + G +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLSHNQL L + L +L LD+S+N+L +L L L L+ L L+GN
Sbjct: 77 PVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L P + L+ LS+A+N + + G L G
Sbjct: 136 LKT-------------------------LPPGLLTPTPKLEKLSLANNDLTELPAGLLNG 170
Query: 288 LDKLTSLSCHHNQIDVLEDHSF 309
L+ L +L N + + F
Sbjct: 171 LENLDTLLLQENSLYTIPKGFF 192
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +N L +P L P L LD+S N+L L + +GL L L L N+L
Sbjct: 79 LGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
TL L P L L L N LT L GL ++ L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 9/230 (3%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAP-NLDRLDLSHNQLY 181
L + S +L+++ G F L+ L L L +N LS + + +L LDLS N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 182 KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR---VLRLQGNRLTVSVVAALQG 238
+ +++F GL L LD ++ L +S+ + ++LR L + V+ G
Sbjct: 92 TM-SSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
L S+ L ++ N P L +L L ++ Q + A L L L+ H
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
N L+ ++ L++L LD + N I+ L H S+L L+L+ N
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 104/243 (42%), Gaps = 41/243 (16%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGL-------- 191
G+ S L L +N L +P L L +L LS N L SFKG
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGL------SFKGCCSQSDFGT 77
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHN 250
+SL +LDLS+N ++T+S + L L L L Q + L +S + LR++ LD+SH
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
LSSL+VL +A N F Q + L D F
Sbjct: 137 HTRVAFN-GIFNGLSSLEVLKMAGNSF----------------------QENFLPD-IFT 172
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L L+ LDL+ ++ +S + LS+L L++SHN +L L SLQ L
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 371 NDI 373
N I
Sbjct: 233 NHI 235
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 3/172 (1%)
Query: 83 AISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLS 142
+S + GLE E + L ++ FL L L IS + +G F GLS
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S L+ L + N + NL LDLS QL +L T+F LSSL L++S+N
Sbjct: 151 S-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL-RSVTDLDLSHNLLA 253
+L L +L+VL N + S LQ S+ L+L+ N A
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 41/214 (19%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKG--------LSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
P+L+ LDLS N L SFKG +SL +LDLS+N ++T+S + L L L
Sbjct: 347 PSLEFLDLSRNGL------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 399
Query: 220 VLRLQGNRLT-VSVVAALQGLRSVTDLDLSH------------------------NLLAG 254
L Q + L +S + LR++ LD+SH N
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
P L +L L ++ Q + A L L L+ HN L+ ++ L++
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 315 LSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
L LD + N I+ L H S+L L+L+ N
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 24/156 (15%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
+ A GL S+ L LA L + L +LK L++AHN S +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFK----------- 140
Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
L ++ F L+ L HLDL+ N+I ++
Sbjct: 141 -----------LPEY-FSNLTNLEHLDLSSNKIQSI 164
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 3/172 (1%)
Query: 83 AISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLS 142
+S + GLE E + L ++ FL L L IS + +G F GLS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S L+ L + N + NL LDLS QL +L T+F LSSL L++S+N
Sbjct: 446 S-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL-RSVTDLDLSHNLLA 253
+L L +L+VL N + S LQ S+ L+L+ N A
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLS ++ +E+ +++ LS L+ L L+ N + +L+ + L +L+ L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L + L+++ +L+++HNL+ P L++L+ L ++ N+ S+
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 126 LK----ELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
GL++ +++L L N ++ + L A NL L L +++ +E +F L SL LDL
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
S N L +LS PL +L+ L L GN V +L
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----------------------- 144
Query: 260 TVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
P L++L+ L I + + FS +RR AGL L L + + S +++ + HL
Sbjct: 145 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 203
Query: 319 DL 320
L
Sbjct: 204 TL 205
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
+++K L ++ N+ + + G L L L ++I+ +E +F +L +L HLDL+ N
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 111
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-LKSLQELRLDDNDISMEPECI-YV 382
+ ++S + LS+L L+L N + L + P L +LQ LR+ + + E I +
Sbjct: 112 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 171
Query: 383 GFNTMD 388
G +++
Sbjct: 172 GLTSLN 177
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 277 FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336
F+S+ G A + SL N+I + RA + L L L +RI + G + L
Sbjct: 43 FTSIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+L LDLS N L +L+ PL SL+ L L N
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 79 SDLYAISESLRGLE-PDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGA 137
S +Y++ E ++ + + +V L+ C+ S K LE + L ++ LKN A
Sbjct: 329 STVYSLLEKVKRITVENSKVFLVPCSFSQHL----KSLEFLDLSENLMVEEYLKN---SA 381
Query: 138 FIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF 196
G LQ L L N+L S+ T + NL LD+S N + + + S + + F
Sbjct: 382 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRF 440
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL-TVSVVAALQGLRSVTDLDLSHNLLAGP 255
L+LS + + + C+ TL VL + N L + S+ L + +L +S N L
Sbjct: 441 LNLSSTGIRVV-KTCIPQ--TLEVLDVSNNNLDSFSLF-----LPRLQELYISRNKLKTL 492
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
S P L V+ IA NQ SV G L L + H N D
Sbjct: 493 PDASLFP---VLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 536
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 293 SLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
SLSC + + SF ++ + + LDL+ N+I + L +NL L L +
Sbjct: 27 SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 86
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ + D L SL+ L L DN +S
Sbjct: 87 RINTIEGDAFYSLGSLEHLDLSDNHLS 113
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
GL++ +++L L N ++ + L A NL L L +++ +E +F L SL LDL
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
S N L +LS PL +L+ L L GN V +L
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----------------------- 118
Query: 260 TVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
P L++L+ L I + + FS +RR AGL L L + + S +++ + HL
Sbjct: 119 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 319 DL 320
L
Sbjct: 178 TL 179
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
+++K L ++ N+ + + G L L L ++I+ +E +F +L +L HLDL+ N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-LKSLQELRLDDNDISMEPECI-YV 382
+ ++S + LS+L L+L N + L + P L +LQ LR+ + + E I +
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 383 GFNTMD 388
G +++
Sbjct: 146 GLTSLN 151
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 277 FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336
F+S+ G A + SL N+I + RA + L L L +RI + G + L
Sbjct: 17 FTSIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+L LDLS N L +L+ PL SL+ L L N
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 293 SLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
SLSC + + SF ++ + + LDL+ N+I + L +NL L L +
Sbjct: 1 SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ + D L SL+ L L DN +S
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLS 87
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 79 SDLYAISESLRGLE-PDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGA 137
S +Y++ E ++ + + +V L+ C+ S K LE + L ++ LKN A
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHL----KSLEFLDLSENLMVEEYLKN---SA 355
Query: 138 FIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF 196
G LQ L L N+L S+ T + NL LD+S N + + + S + + F
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRF 414
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL-TVSVVAALQGLRSVTDLDLSHNLLAGP 255
L+LS + + + C+ TL VL + N L + S+ L + +L +S N L
Sbjct: 415 LNLSSTGIRVV-KTCIPQ--TLEVLDVSNNNLDSFSLF-----LPRLQELYISRNKLKTL 466
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
S P L V+ I+ NQ SV G L L + H N D
Sbjct: 467 PDASLFP---VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200
L + + L N + V+P A +P L R+DLS+NQ+ +L +F+GL SLN L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 201 YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPST 260
NK+ L + L +L++L L N++ V A Q L ++ L L N L + T
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGT 147
Query: 261 VPRLSSLKVLSIAHNQF 277
L +++ + +A N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
++T++ L N + + P L+ + +++NQ S + A GL L SL + N+
Sbjct: 33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
I L F L +L L L N+I + + L NL L L N L+ + + +PL
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 361 KSLQELRLDDN 371
+++Q + L N
Sbjct: 152 RAIQTMHLAQN 162
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
T++ + L N I + + + L +DLS+N + L D L+SL L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 373 ISMEPECIYVG 383
I+ P+ ++ G
Sbjct: 92 ITELPKSLFEG 102
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
+ +T + N I V+ +F L +DL++N+I ++ + L +L +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 349 LRALTQDLI 357
+ L + L
Sbjct: 92 ITELPKSLF 100
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSS--------LNFLDLSYNKLMTLSQDCLAPLVTLR 219
P+L+ LDLS N L SFKG S L +LDLS+N ++T+S + L L L
Sbjct: 371 PSLEFLDLSRNGL------SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLE 423
Query: 220 VLRLQGNRLT-VSVVAALQGLRSVTDLDLSH------------------------NLLAG 254
L Q + L +S + LR++ LD+SH N
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
P L +L L ++ Q + A L L L+ HN L+ ++ L++
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 315 LSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
L LD + N I+ L H S+L L+L+ N
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 53 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 172 LTNLEHLDLSSNKI 185
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 24/156 (15%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
+ A GL S+ L LA L + L +LK L++AHN S +
Sbjct: 117 LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFK----------- 164
Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
L ++ F L+ L HLDL+ N+I ++
Sbjct: 165 -----------LPEY-FSNLTNLEHLDLSSNKIQSI 188
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 3/172 (1%)
Query: 83 AISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLS 142
+S + GLE E + L ++ FL L L IS + +G F GLS
Sbjct: 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S L+ L + N + NL LDLS QL +L T+F LSSL L++S+N
Sbjct: 470 S-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL-RSVTDLDLSHNLLA 253
+L L +L+VL N + S LQ S+ L+L+ N A
Sbjct: 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
P L LDLS ++ +E+ +++ LS L+ L L+ N + +L+ + L +L+ L
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L + L+++ +L+++HNL+ P L++L+ L ++ N+ S+
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 150 LK----ELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200
L + + L N + V+P A +P L R+DLS+NQ+ +L +F+GL SLN L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 201 YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPST 260
NK+ L + L +L++L L N++ V A Q L ++ L L N L + T
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT-IAKGT 147
Query: 261 VPRLSSLKVLSIAHNQF 277
L +++ + +A N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
++T++ L N + + P L+ + +++NQ S + A GL L SL + N+
Sbjct: 33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
I L F L +L L L N+I + + L NL L L N L+ + + +PL
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 361 KSLQELRLDDN 371
+++Q + L N
Sbjct: 152 RAIQTMHLAQN 162
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
T++ + L N I + + + L +DLS+N + L D L+SL L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 373 ISMEPECIYVG 383
I+ P+ ++ G
Sbjct: 92 ITELPKSLFEG 102
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
+ +T + N I V+ +F L +DL++N+I ++ + L +L +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 349 LRALTQDLI 357
+ L + L
Sbjct: 92 ITELPKSLF 100
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 19/285 (6%)
Query: 72 LRCTANKSDLYAISESLRGLE--PD----ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVI 125
C AN S + S++ LE P + +S++ C L L FL+ +TL +
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL---TM 337
Query: 126 SSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAPLAPN-LDRLDLSHNQLYKL 183
+ G + +F ++ P L L L N LS + + L N L LDLS N +
Sbjct: 338 NKGSI------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 390
Query: 184 ENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
+ +F GL L LD ++ L +++ L L L + + GL S+
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450
Query: 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
L ++ N + ++L L ++ Q + G L +L L+ HN +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L+ + L +LS LD + NRI G +L +L++N
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
+DLS N L L++ SF S L +LDLS ++ T+ L L L L GN +
Sbjct: 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
+ GL S+ +L LA L + +L +LK L++AHN S + A
Sbjct: 96 SPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAY------ 148
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
F L+ L H+DL++N I ++ L L ++LS
Sbjct: 149 -----------------FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
SS +DLS+N L L + L+ L L + A GL +++L +
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL-----I 86
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
L G N S G+ +GL L +L ++ LE
Sbjct: 87 LTG--------------------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126
Query: 312 LSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L TL L++AHN I + A ++L+NL +DLS+N+++ +T + + L+ ++ L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186
Query: 371 NDISMEP 377
D+S+ P
Sbjct: 187 -DMSLNP 192
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 168 PNLDRLDLSHNQLYKLENTSFK--GLSSLNFLDLSYNKLMTLSQDC-LAPLVT--LRVLR 222
P L L L+ N+ + SFK L SL++LDLS N L + S C + L T LR L
Sbjct: 328 PFLKSLTLTMNK----GSISFKKVALPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLD 382
Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
L N + + A GL + LD H+ L S L L L I++
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 283 GALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 341
G GL L +L N D + F + L+ LDL+ ++ +S L L
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Query: 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L++SHN L L L SL L N I
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 96 RVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
+ LD + + + K G+ L L+++ +++ S G+F GL+S + + L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 155 LSV--VPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDC 211
S+ P L L +L+++HN ++ + F L++L +DLSYN + T++ +
Sbjct: 117 ASLESFPIGQLITLK----KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 212 LA-----PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS 266
L P V L L + N + A QG++ + +L L N + + + + L+
Sbjct: 173 LQFLRENPQVNLS-LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAG 230
Query: 267 LKVLSIAHNQFSSVRR 282
L V + +F R
Sbjct: 231 LHVHRLILGEFKDERN 246
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 23/171 (13%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S LQ L L + + A L +L L L+ N + SF GL+SL L
Sbjct: 56 SELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRL-TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
KL +L + L+TL+ L + N + + + A L ++ +DLS+N +
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-------- 166
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
+I N +R L SL N ID ++D +F+ +
Sbjct: 167 ---------TITVNDLQFLRENPQVNL----SLDMSLNPIDFIQDQAFQGI 204
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 19/285 (6%)
Query: 72 LRCTANKSDLYAISESLRGLE--PD----ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVI 125
C AN S + S++ LE P + +S++ C L L FL+ +TL +
Sbjct: 276 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL---TM 332
Query: 126 SSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAPLAPN-LDRLDLSHNQLYKL 183
+ G + +F ++ P L L L N LS + + L N L LDLS N +
Sbjct: 333 NKGSI------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 385
Query: 184 ENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
+ +F GL L LD ++ L +++ L L L + + GL S+
Sbjct: 386 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 445
Query: 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
L ++ N + ++L L ++ Q + G L +L L+ HN +
Sbjct: 446 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 505
Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L+ + L +LS LD + NRI G +L +L++N
Sbjct: 506 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
+DLS N L L++ SF S L +LDLS ++ T+ L L L L GN +
Sbjct: 31 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
+ GL S+ +L LA L + +L +LK L++AHN S + A
Sbjct: 91 SPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAY------ 143
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
F L+ L H+DL++N I ++ L L ++LS
Sbjct: 144 -----------------FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
SS +DLS+N L L + L+ L L + A GL +++L +
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL-----I 81
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
L G N S G+ +GL L +L ++ LE
Sbjct: 82 LTG--------------------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 121
Query: 312 LSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L TL L++AHN I + A ++L+NL +DLS+N+++ +T + + L+ ++ L
Sbjct: 122 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 181
Query: 371 NDISMEP 377
D+S+ P
Sbjct: 182 -DMSLNP 187
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 168 PNLDRLDLSHNQLYKLENTSFK--GLSSLNFLDLSYNKLMTLSQDC-LAPLVT--LRVLR 222
P L L L+ N+ + SFK L SL++LDLS N L + S C + L T LR L
Sbjct: 323 PFLKSLTLTMNK----GSISFKKVALPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLD 377
Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
L N + + A GL + LD H+ L S L L L I++
Sbjct: 378 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 436
Query: 283 GALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 341
G GL L +L N D + F + L+ LDL+ ++ +S L L
Sbjct: 437 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 496
Query: 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L++SHN L L L SL L N I
Sbjct: 497 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 96 RVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
+ LD + + + K G+ L L+++ +++ S G+F GL+S + + L
Sbjct: 52 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 111
Query: 155 LSV--VPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDC 211
S+ P L L +L+++HN ++ + F L++L +DLSYN + T++ +
Sbjct: 112 ASLESFPIGQLITLK----KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 167
Query: 212 LA-----PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS 266
L P V L L + N + A QG++ + +L L N + + + + L+
Sbjct: 168 LQFLRENPQVNLS-LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAG 225
Query: 267 LKVLSIAHNQFSSVRR 282
L V + +F R
Sbjct: 226 LHVHRLILGEFKDERN 241
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 23/171 (13%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S LQ L L + + A L +L L L+ N + SF GL+SL L
Sbjct: 51 SELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 109
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRL-TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
KL +L + L+TL+ L + N + + + A L ++ +DLS+N +
Sbjct: 110 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-------- 161
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
+I N +R L SL N ID ++D +F+ +
Sbjct: 162 ---------TITVNDLQFLRENPQVNL----SLDMSLNPIDFIQDQAFQGI 199
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
+ A GL S+ L LA P+G L +LK L++AHN S +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 140
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
L ++ F L+ L HLDL+ N+I ++ L L + L+LS
Sbjct: 141 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
NF++ I L+EL LD N + P+ I+ ++ +++ W
Sbjct: 185 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK- 124
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 125 ---TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
+ A GL S+ L LA P+G L +LK L++AHN S +
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 141
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
L ++ F L+ L HLDL+ N+I ++ L L + L+LS
Sbjct: 142 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
NF++ I L+EL LD N + P+ I+ ++ +++ W
Sbjct: 186 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 237
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 30 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 88
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 89 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK- 125
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 126 ---TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
+ A GL S+ L LA P+G L +LK L++AHN S +
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 141
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
L ++ F L+ L HLDL+ N+I ++ L L + L+LS
Sbjct: 142 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
NF++ I L+EL LD N + P+ I+ ++ +++ W
Sbjct: 186 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 237
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 30 STKNLDLSWNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 88
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 89 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK- 125
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 126 ---TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
+ A GL S+ L LA P+G L +LK L++AHN S +
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 142
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
L ++ F L+ L HLDL+ N+I ++ L L + L+LS
Sbjct: 143 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
NF++ I L+EL LD N + P+ I+ ++ +++ W
Sbjct: 187 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 238
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 31 STKNLDLSWNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 89
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 90 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 150 LTNLEHLDLSSNKI 163
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + + NL S+ P L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK- 126
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 127 ---TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LDLS N L L + SF L LDLS ++ T+ L L L L GN +
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
+ A GL S+ L LA P+G L +LK L++AHN S +
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 142
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
L ++ F L+ L HLDL+ N+I ++ L L + L+LS
Sbjct: 143 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
NF++ I L+EL LD N + P+ I+ ++ +++ W
Sbjct: 187 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 238
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 31 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 89
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 90 IQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 360 LKSLQELRLDDNDI 373
L +L+ L L N I
Sbjct: 150 LTNLEHLDLSSNKI 163
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV--VPTSALAP 165
T+ G + L L+++ +++++ GAF GLSS + + L NL S+ P L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLK- 126
Query: 166 LAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L+++HN Q +KL F L++L LDLS NK+ ++
Sbjct: 127 ---TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 166
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%)
Query: 150 LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
L +N L + + L P+L +L+L NQL +E +F+G S + L L NK+ +S
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
L L+ L L N+++ + + + L S+T L+L+ N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%)
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
T+L L+ N L RL L L + NQ + + A G + L N+I
Sbjct: 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
+ + F L L L+L N+I V S HL++LT+L+L+ N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%)
Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
G L L L NQ+ +E ++F S + L L N+I +S L L TL
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDN 371
+L N + + L SL L L N
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 8/184 (4%)
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
T LDL N L L L+SL L + N+ S+ G L LT L+ NQ+
Sbjct: 30 TTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361
L + F L+ L L L N++ ++ L+ L L L N L+++ + L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 362 SLQELRLDDNDISMEPECIYVGFNTMDLELI--YSGVWRHSTLLIPVMLSLCTRSSVVTR 419
SLQ + L DN +C G + E I +SGV R+S + + C+ S R
Sbjct: 149 SLQYIWLHDNPW----DCTCPGIRYLS-EWINKHSGVVRNSAGSVAPDSAKCSGSGKPVR 203
Query: 420 YRYC 423
C
Sbjct: 204 SIIC 207
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
G+ + L L N L +P L +L +L L N+L L N F L+SL +L+L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
S N+L +L L L+ L L N+ L+S+ D
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQ-----------LQSLPD--------------G 118
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
+L+ LK L + NQ SV G L L + H N D + + LS
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWI 174
Query: 320 LAHNRIVAVSGASLA 334
H+ +V S S+A
Sbjct: 175 NKHSGVVRNSAGSVA 189
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L+SL L+++ NQ S+ G L +L L+ + NQ+ L D F
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 310 RALSTLSHL---DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
+ LS HL DL++NRI +S S ++++ L TL LS+N LR + LKSL+ L
Sbjct: 48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 367 RLDDNDISMEPE 378
L NDIS+ PE
Sbjct: 108 SLHGNDISVVPE 119
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L L GN+ T+ V L + +T +DLS+N ++ L + ++ L L +++N+ +
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
GL L LS H N I V+ + +F LS LSHL + N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
+DLS+N++ L N SF ++ L L LSYN+L + L +LR+L L GN ++V
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 233 VAALQGLRSVTDLDLSHNLL 252
A L +++ L + N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN----LL 252
LDLS N L +S LAP L +L L N L ++ L+ L ++ LDL++N LL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
GP S++ L A+N S V G ++ +N+I +L D
Sbjct: 97 VGP----------SIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCR 143
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSN-LTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
S + +LDL N I V+ A LA S+ L L+L +NF+ + ++ L+ L L N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN 201
Query: 372 DIS-MEPE 378
++ M PE
Sbjct: 202 KLAFMGPE 209
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 193 SLNFLDLSYNKLMT---LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
+L FLD+S N T DC A L+ L + GN+L+ A+ + L++S
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL-DKLTSLSCHHNQI------- 301
N GP+ P +P L SL+ LS+A N+F+ L+G D LT L N
Sbjct: 257 NQFVGPIPP--LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 302 ------------------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-NLTTL 342
L + + L LDL+ N SL +LS +L TL
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 343 DL-SHNFLRALTQDLI-TPLKSLQELRLDDNDIS 374
DL S+NF + +L P +LQEL L +N +
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 109/280 (38%), Gaps = 34/280 (12%)
Query: 129 ELK--NISDGAFIGLSSPL-----QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY 181
ELK NIS F+G PL Q L L N + L+ L LDLS N Y
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 182 KLENTSFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLR 240
F S L L LS N L D L + L+VL L N + + +L L
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 241 -SVTDLDLSHNLLAGPLGPS-------------------------TVPRLSSLKVLSIAH 274
S+ LDLS N +GP+ P+ T+ S L L ++
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
N S +L L KL L N ++ + TL L L N + + L+
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
+ +NL + LS+N L I L++L L+L +N S
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 13/210 (6%)
Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
L+ L L N L + ++LN++ LS N+L + L L +L+L N +
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
++ A L RS+ LDL+ NL G + + + + IA ++ ++ G+
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN---DGMK 584
Query: 290 KLTSLSCHHNQIDVLEDHSFRA-----LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
K C H ++LE R+ LST + ++ + + + ++ LD+
Sbjct: 585 K----EC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDIS 374
S+N L I + L L L NDIS
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 134/337 (39%), Gaps = 65/337 (19%)
Query: 105 SNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGL-----SSPLQALGLPNNLLSV-V 158
SN PGK G+ L+ L + +IS +G L+ L + N +S V
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKG-LSSLNFLDLSYN--------------- 202
S NL+ LD+S N F G S+L LD+S N
Sbjct: 195 DVSRCV----NLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 203 -KLMTLSQDCLA------PLVTLRVLRLQGNRLTVSVVAALQGL-RSVTDLDLSHNLLAG 254
KL+ +S + PL +L+ L L N+ T + L G ++T LDLS N G
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 255 PLGP------------------------STVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
+ P T+ ++ LKVL ++ N+FS +L L
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 291 --LT-SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
LT LS ++ +L + +TL L L +N +L++ S L +L LS N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 348 FLRALTQDLITPLKSLQELRLDDNDISME--PECIYV 382
+L + L L++L+L N + E E +YV
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LD+S+N L + L L+L +N + D + L L +L L N+L +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
A+ L +T++DLS+N L+GP +P + + A
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGP-----IPEMGQFETFPPAK 733
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
+F S+ FLD+SYN L + + L +L L N ++ S+ + LR + LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
LS N L G + P + L+ L + +++N S
Sbjct: 687 LSSNKLDGRI-PQAMSALTMLTEIDLSNNNLSG 718
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 233 VAALQGLRSVTDLDLSHNLLAGP------LG-----------------PSTVP---RLSS 266
V+ + S+T LDLS N L+GP LG P V +L+S
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 267 LKVLSIAHNQFSSVRRGALA---GLDKLTSLSCHHNQI---------------DVLEDHS 308
L+VL ++ N S G +L L+ N+I DV ++
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 212
Query: 309 FRAL------STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 362
+ S L HLD++ N++ +++ + L L++S N L PLKS
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 363 LQELRLDDNDISME 376
LQ L L +N + E
Sbjct: 271 LQYLSLAENKFTGE 284
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
S+ L +++N S + + L L+ HN I L L+ LDL+ N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRA 351
+ +++ L+ LT +DLS+N L
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSG 718
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 109/280 (38%), Gaps = 34/280 (12%)
Query: 129 ELK--NISDGAFIGLSSPL-----QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY 181
ELK NIS F+G PL Q L L N + L+ L LDLS N Y
Sbjct: 245 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 182 KLENTSFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLR 240
F S L L LS N L D L + L+VL L N + + +L L
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 241 -SVTDLDLSHNLLAGPLGPS-------------------------TVPRLSSLKVLSIAH 274
S+ LDLS N +GP+ P+ T+ S L L ++
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
N S +L L KL L N ++ + TL L L N + + L+
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
+ +NL + LS+N L I L++L L+L +N S
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 193 SLNFLDLSYNKLMT---LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
+L FLD+S N T DC A L+ L + GN+L+ A+ + L++S
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL-DKLTSLSCHHNQI------- 301
N GP+ P +P L SL+ LS+A N+F+ L+G D LT L N
Sbjct: 254 NQFVGPIPP--LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 302 ------------------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-NLTTL 342
L + + L LDL+ N SL +LS +L TL
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 343 DL-SHNFLRALTQDLI-TPLKSLQELRLDDNDIS 374
DL S+NF + +L P +LQEL L +N +
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 16/228 (7%)
Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
L+ L L N L + ++LN++ LS N+L + L L +L+L N +
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
++ A L RS+ LDL+ NL G + + + + IA ++ ++ G+
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN---DGMK 581
Query: 290 KLTSLSCHHNQIDVLEDHSFRA-----LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
K C H ++LE R+ LST + ++ + + + ++ LD+
Sbjct: 582 K----EC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISME-PECI--YVGFNTMDL 389
S+N L I + L L L NDIS P+ + G N +DL
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 134/337 (39%), Gaps = 65/337 (19%)
Query: 105 SNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGL-----SSPLQALGLPNNLLSV-V 158
SN PGK G+ L+ L + +IS +G L+ L + N +S V
Sbjct: 132 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 191
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKG-LSSLNFLDLSYN--------------- 202
S NL+ LD+S N F G S+L LD+S N
Sbjct: 192 DVSRCV----NLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 203 -KLMTLSQDCLA------PLVTLRVLRLQGNRLTVSVVAALQGL-RSVTDLDLSHNLLAG 254
KL+ +S + PL +L+ L L N+ T + L G ++T LDLS N G
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 255 PLGP------------------------STVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
+ P T+ ++ LKVL ++ N+FS +L L
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 291 --LT-SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
LT LS ++ +L + +TL L L +N +L++ S L +L LS N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 348 FLRALTQDLITPLKSLQELRLDDNDISME--PECIYV 382
+L + L L++L+L N + E E +YV
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LD+S+N L + L L+L +N + D + L L +L L N+L +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
A+ L +T++DLS+N L+GP +P + + A
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGP-----IPEMGQFETFPPAK 730
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
+F S+ FLD+SYN L + + L +L L N ++ S+ + LR + LD
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
LS N L G + P + L+ L + +++N S
Sbjct: 684 LSSNKLDGRI-PQAMSALTMLTEIDLSNNNLSG 715
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 233 VAALQGLRSVTDLDLSHNLLAGP------LG-----------------PSTVP---RLSS 266
V+ + S+T LDLS N L+GP LG P V +L+S
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 149
Query: 267 LKVLSIAHNQFSSVRRGALA---GLDKLTSLSCHHNQI---------------DVLEDHS 308
L+VL ++ N S G +L L+ N+I DV ++
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 209
Query: 309 FRAL------STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 362
+ S L HLD++ N++ +++ + L L++S N L PLKS
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 267
Query: 363 LQELRLDDNDISME 376
LQ L L +N + E
Sbjct: 268 LQYLSLAENKFTGE 281
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 25/111 (22%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S+ LD+S+N+L+G + P + + L +L++ HN S G++
Sbjct: 630 SMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDIS----GSIP-------------- 670
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
D + D L L+ LDL+ N++ +++ L+ LT +DLS+N L
Sbjct: 671 -DEVGD-----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 161 SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
S A + N L L NQ+ KLE F L +L L L N+L L L L V
Sbjct: 33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
L L N+LTV A L + +L + N L P + RL+ L L++ NQ S+
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSI 150
Query: 281 RRGALAGLDKLTSLS 295
GA D+L+SL+
Sbjct: 151 PHGA---FDRLSSLT 162
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P+ +P ++ ++L + NQ + + G L L L NQ+ L F +L+ L+
Sbjct: 35 PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
LDL N++ + A L +L L + N L L + I L L L LD N + P
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIP 151
Query: 378 ECIYVGFNTMDLELIYSGVW 397
+ +++ ++ W
Sbjct: 152 HGAFDRLSSLTHAYLFGNPW 171
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L P L +LK L + NQ ++ G L +LT L NQ+ VL F L L
Sbjct: 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 375
L + N++ + + L++LT L L N L+++ L SL L N
Sbjct: 115 KELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173
Query: 376 E 376
E
Sbjct: 174 E 174
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 237 QGLRSVTDL-DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 295
Q L S T L DLSHN L+ T RL++L L ++HN + + A + L L
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
N + L++ F L L L L +N IV V + ++ L L LS N + +
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154
Query: 356 LITPLKSLQELRLDD 370
LI L +L L D
Sbjct: 155 LIKDGNKLPKLMLLD 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 313
P P ++P ++L L ++HN S +R L L SL HN ++ + +F +
Sbjct: 31 PNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88
Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
L +LDL+ N + + + L L L L +N + + ++ + LQ+L L N I
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 374 SMEP 377
S P
Sbjct: 149 SRFP 152
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L +N LS + NL L LSHN L + + +F + +L +LDLS N L TL
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253
+ + L L VL L N + V A + + + L LS N ++
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 41/197 (20%)
Query: 61 NDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEG--V 118
N LCA ++ L C+ K L + +SL +LLD + +N++ L ++
Sbjct: 15 NCLCASNI---LSCS--KQQLPNVPQSLPSY-----TALLDLSHNNLSRLRAEWTPTRLT 64
Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178
LH L++S L IS AF+ + PNL LDLS N
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPV--------------------------PNLRYLDLSSN 98
Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN---RLTVSVVAA 235
L+ L+ F L +L L L N ++ + ++ + L+ L L N R V ++
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 236 LQGLRSVTDLDLSHNLL 252
L + LDLS N L
Sbjct: 159 GNKLPKLMLLDLSSNKL 175
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 318 LDLAHNRIVAVSGA-SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
LDL+HN + + + L+NL +L LSHN L ++ + P+ +L+ L L N +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 377 PECIYVGFNTMDLELIYSG 395
E ++ +++ L+Y+
Sbjct: 104 DEFLFSDLQALEVLLLYNN 122
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN----LL 252
LDLS N L +S LAP L +L L N L ++ L+ L ++ LDL++N LL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 253 AGP------LGPSTVPRLS-----SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
GP + + R+S K + +A+N+ + +R ++ L N+I
Sbjct: 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 302 DVLEDHSFRALS-TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
D + A S TL HL+L +N I V G + + L TLDLS N L
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL 203
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 26/218 (11%)
Query: 169 NLDRLDLSHNQLYKLENTSF--KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
NL LDLSHN + + S K LS L L+LS+N+ + L L +L L
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 227 RLTVSV-VAALQGLRSVTDLDLSH--------NLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
RL ++ + Q L + L+L++ +LLAG +P L L L H Q
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAG------LPVLRHLN-LKGNHFQD 460
Query: 278 SSVRRGAL----AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
++ + L L+ L SC ID +F +L +SH+DL+HN + S SL
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSID---QQAFHSLGKMSHVDLSHNSLTCDSIDSL 517
Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+HL + L+L+ N + ++ L+ L + L N
Sbjct: 518 SHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
+ L+ S N L + N +F L +L FLDL+ ++ + +D L L L GN L
Sbjct: 33 EFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIF 92
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
+L G +S+ L L ++ L V L +L+ L + N SS++
Sbjct: 93 MAETSLNGPKSLKHLFLIQTGISN-LEFIPVHNLENLESLYLGSNHISSIKFPKDFPARN 151
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
L L +N I + R+L +L L N
Sbjct: 152 LKVLDFQNNAIHYISREDMRSLEQAINLSLNFN 184
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 234 AALQGL--RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
A L+GL SV L+L + + + +T + L+ L + + G + GL+ L
Sbjct: 243 AMLKGLCEMSVESLNLQEHRFSD-ISSTTFQCFTQLQELDLTATHLKGLPSG-MKGLNLL 300
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASLAHLSNLTTLDLSHNFLR 350
L N D L S +L+HL + N + + + L L NL TLDLSHN +
Sbjct: 301 KKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
Query: 351 A 351
A
Sbjct: 361 A 361
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253
+N++DLS N + L++ + L L+ L+++ + L + +N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVE---------------QQTPGLVIRNNTFR 76
Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRA 311
G LSSL +L + +NQF + GA GL L L+ +D VL + F+
Sbjct: 77 G---------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 312 LSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQD 355
L++L L L N I + AS ++ LDL+ N ++++ ++
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 138/336 (41%), Gaps = 55/336 (16%)
Query: 111 PGKFLEGVTLHGL------VISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVVPTSAL 163
PG + T GL + + + GAF GL++ L+ L L NL V +
Sbjct: 66 PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNF 124
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFK-GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222
+L+ L L N + K++ SF + + LDL++NK+ ++ ++ L L
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--------LN 176
Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF--SSV 280
QG T+ ++++ L+ + + L P + +S+ L ++ N F S
Sbjct: 177 FQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPF------KNTSITTLDLSGNGFKESMA 229
Query: 281 RR--GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
+R A+AG K+ SL + +S+ S+ H + G S
Sbjct: 230 KRFFDAIAGT-KIQSL---------ILSNSYNMGSSFGHTNFKDPDNFTFKGL---EASG 276
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG--------FNTMDLE 390
+ T DLS + + AL + + + L++L L N+I+ + + G +T L+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 391 LIYSGVWRHSTLLIPVMLSL------CTRSSVVTRY 420
+ G++ T L + L C R ++R+
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 372
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL-MTLSQDCLAPLVTLRVLRLQ 224
L +++ +DLS N + +L TSF L L FL + + + + L +L +L+L
Sbjct: 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSH-NLLAGPLGPSTVPRLSSLKVLSIAHNQ------- 276
N+ A GL ++ L L+ NL L + L+SL++L + N
Sbjct: 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 277 --FSSVRRGALAGL--DKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGA 331
F ++RR + L +K+ S+ C + ++ H + LS+++ D+ +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSI-CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 332 SLAHLSNLTTLDLSHNFLR 350
+ +++TTLDLS N +
Sbjct: 207 NPFKNTSITTLDLSGNGFK 225
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Query: 186 TSFKGLSSLN---FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
T+ +G+ LN L+L N++ L+ L L + L L GN L V+A+ GL+S+
Sbjct: 60 TTIEGIQYLNNLIGLELKDNQITDLT--PLKNLTKITELELSGNPL--KNVSAIAGLQSI 115
Query: 243 TDLDLSHNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
LDL+ + PL LS+L+VL + NQ +++ LAGL L LS +NQ
Sbjct: 116 KTLDLTSTQITDVTPLA-----GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNNQ 168
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
++ L LS L+ L N+I +S LA L NL + L N + ++PL
Sbjct: 169 VNDL--TPLANLSKLTTLRADDNKISDIS--PLASLPNLIEVHLKDNQISD-----VSPL 219
Query: 361 KSLQEL 366
+L L
Sbjct: 220 ANLSNL 225
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 261 VPRLSSLK--VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
VP+ S K +L+I+ N S + + L KL L HN+I L+ F+ L +L
Sbjct: 15 VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74
Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
DL+HN++V +S NL LDLS N AL
Sbjct: 75 DLSHNKLVKISCHPTV---NLKHLDLSFNAFDAL 105
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQELRL 368
+S HLD ++N + + HL+ L TL L N L+ L++ ++ T +KSLQ+L +
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 369 DDNDISMEPE 378
N +S + +
Sbjct: 382 SQNSVSYDEK 391
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS--FKGLSSLNFLDLS 200
SP L NNLL+ L L+ L L NQL +L + + SL LD+S
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 201 YNKLMTLSQ--DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
N + + DC + +L L + N LT ++ L V LDL N + P
Sbjct: 383 QNSVSYDEKKGDC-SWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKIKSI--P 437
Query: 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
V +L +L+ L++A NQ SV G L L + H N D
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200
LS L + N +S + TS + L+ L L +SHN++ L+ + FK L +LDLS
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 201 YNKLMTLSQDCLAPLVTLRVLRLQGN 226
+NKL+ +S C P V L+ L L N
Sbjct: 78 HNKLVKIS--C-HPTVNLKHLDLSFN 100
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 88 LRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQA 147
R L P R+ +LD + + +P + ++ L L ++S +LK++ DG F L+S LQ
Sbjct: 416 FRCLPP--RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS-LQK 472
Query: 148 LGLPNN 153
+ L N
Sbjct: 473 IWLHTN 478
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
K T L+ N I L +LS L L ++HNRI + + L LDLSHN L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 350 RALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
++ P +L+ L L N P C G
Sbjct: 82 VKIS---CHPTVNLKHLDLSFNAFDALPICKEFG 112
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
K LS++ N S +R ++ L +L L HN+I L+ H F L +LD++HNR+
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 328 VSGASLAHLSNLTTLDLSHN 347
+S +A L + LDLS N
Sbjct: 115 ISCCPMASLRH---LDLSFN 131
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 189 KGLSSLNFLDLSYNKLMTLSQD-CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
K +SSL LD+S N L + + D A ++ VL L N LT SV L V LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDL 457
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 307
+N + P V L +L+ L++A NQ SV G L L + H N D
Sbjct: 458 HNNRIMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 511
Query: 308 SFRALSTLSHLDLAHNRIVAVSGASLA 334
+ + LS H+ +V S S+A
Sbjct: 512 TCPGIRYLSEWINKHSGVVRNSAGSVA 538
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
+ +LS N I L LS L L L+HNRI ++ +L LD+SHN L
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 350 RALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
+ ++ P+ SL+ L L ND + P C G
Sbjct: 113 QNIS---CCPMASLRHLDLSFNDFDVLPVCKEFG 143
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 192 SSLNFLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL--QGLRSVTDLDLS 248
SS FL+ + N ++ Q C + L L+ L LQ N L AL + + S+ LD+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 249 HNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS 308
N L T S+ VL+++ N +L
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSN---------------------------MLTGSV 444
Query: 309 FRALS-TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367
FR L + LDL +NRI+++ + HL L L+++ N L+++ + L SLQ +
Sbjct: 445 FRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 368 LDDNDISMEPECIYVGFNTMDLELI--YSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVV 425
L DN +C G + E I +SGV R+S + + C+ S R C
Sbjct: 504 LHDNPW----DCTCPGIRYLS-EWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSIICPT 558
Query: 426 LI 427
L+
Sbjct: 559 LV 560
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
+AL L N +S + ++ L+ L L LSHN++ L+ F L +LD+S+N+L
Sbjct: 55 KALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTV-SVVAALQGLRSVTDLDLS 248
+S P+ +LR L L N V V L +T L LS
Sbjct: 114 NIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
L LS N ++ P + LS L+VL ++HN+ S+ L L HN+ L
Sbjct: 57 LSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR---L 112
Query: 305 EDHSFRALSTLSHLDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRAL 352
++ S +++L HLDL+ N V +L+ LT L LS R L
Sbjct: 113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 241 SVTDLDLSHNLLAG-PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
S T L+L N L P G +L+ L LS++ NQ S+ G L KLT L H N
Sbjct: 29 SATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
++ L + F L+ L L L N++ +V L++L + L N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 59/148 (39%), Gaps = 29/148 (19%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L+ VPT + + RL+L N+L L + F L+ L L LS N++ +L
Sbjct: 19 LTSVPTG----IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK 74
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L +L L N+ LQ L P G +L+ LK L++
Sbjct: 75 LTKLTILYLHENK--------LQSL---------------PNG--VFDKLTQLKELALDT 109
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQID 302
NQ SV G L L + H N D
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 137
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L+ L LS++ NQ S+ G L KLT L H N++ L + F +
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 186 TSFKGLSSLN---FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
T+ +G+ LN L+L N++ L+ L L + L L GN L V+A+ GL+S+
Sbjct: 54 TTIEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL--KNVSAIAGLQSI 109
Query: 243 TDLDLSHNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
LDL+ + PL LS+L+VL + NQ +++ LAGL L LS + Q
Sbjct: 110 KTLDLTSTQITDVTPLA-----GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQ 162
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
+ L LS L+ L N+I +S LA L NL + L +N
Sbjct: 163 VSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNN 205
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
+ NQI LE F L+ L+ LDL +N++ + L+ LT L L+ N L+++ +
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 357 ITPLKSLQELRLDDN 371
LKSL + L +N
Sbjct: 98 FDNLKSLTHIWLLNN 112
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S T +D S LA P+ +P ++ +VL + NQ + + G L +LT L +NQ
Sbjct: 10 SGTTVDCSGKSLAS--VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
+ VL F L+ L+ L L N++ ++ + +L +LT + L +N D++
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
T +VL L N++T L +T LDL +N L L +L+ L LS+ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDN 88
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQID 302
Q S+ RGA L LT + +N D
Sbjct: 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L L NQ+ KLE F L+ L LDL N+L L L L L L N+L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 233 VAALQGLRSVTDLDLSHN 250
A L+S+T + L +N
Sbjct: 95 RGAFDNLKSLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
+T L L N+I + L+ LT LDL +N L L + L L +L L+DN
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 373 ISMEPECIYVGFNTMDLELIYSGVW 397
+ P + ++ + + W
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
+ NQI LE F L+ L+ LDL +N++ + L+ LT L L+ N L+++ +
Sbjct: 46 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 105
Query: 357 ITPLKSLQELRLDDN 371
LKSL + L +N
Sbjct: 106 FDNLKSLTHIWLLNN 120
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S T +D S LA P+ +P ++ +VL + NQ + + G L +LT L +NQ
Sbjct: 18 SGTTVDCSGKSLAS--VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 73
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
+ VL F L+ L+ L L N++ ++ + +L +LT + L +N D++
Sbjct: 74 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L L NQ+ KLE F L+ L LDL N+L L L L L L N+L
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 233 VAALQGLRSVTDLDLSHN 250
A L+S+T + L +N
Sbjct: 103 RGAFDNLKSLTHIWLLNN 120
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
T +VL L N++T L +T LDL +N L L +L+ L LS+ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDN 96
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQID 302
Q S+ RGA L LT + +N D
Sbjct: 97 QLKSIPRGAFDNLKSLTHIWLLNNPWD 123
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
+T L L N+I + L+ LT LDL +N L L + L L +L L+DN
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 373 ISMEPECIYVGFNTMDLELIYSGVW 397
+ P + ++ + + W
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-YNKLMTLSQDCLAPLVTLRVLRLQGNR 227
NLD L+ + Y + +S L LNFL + N L+ +A L L L +
Sbjct: 54 NLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
++ ++ L ++++ LD S+N L+G L PS ++
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-------------------------ISS 147
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTL-SHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
L L ++ N+I S+ + S L + + ++ NR+ + A+L NL +DLS
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISME 376
N L L K+ Q++ L N ++ +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 8/204 (3%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
+G NNL+ +P A+A L L L ++H + + +L LD SYN L
Sbjct: 83 IGGINNLVGPIP-PAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV-TDLDLSHNLLAGPLGPSTVPRLSS 266
++ L L + GNR++ ++ + + T + +S N L G + P T L+
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN- 198
Query: 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS-TLSHLDLAHNRI 325
L + ++ N L G DK T H + + D LS L+ LDL +NRI
Sbjct: 199 LAFVDLSRNMLEG-DASVLFGSDKNTQ-KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 326 VAVSGASLAHLSNLTTLDLSHNFL 349
L L L +L++S N L
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNL 280
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
++NQI LE F L L L N++ A+ L+ LT LDL+ N L+++ +
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100
Query: 357 ITPLKSLQELRLDDNDISME 376
LKSL + L +N E
Sbjct: 101 FDNLKSLTHIYLYNNPWDCE 120
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%)
Query: 161 SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
S A + + RL L++NQ+ KLE F L +L L + NKL + L L
Sbjct: 26 SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
L L N L A L+S+T + L +N
Sbjct: 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 84/181 (46%), Gaps = 18/181 (9%)
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTD 244
T L+ L L L+YN++ +S LA L +L N++T ++ VA L S
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITPVANXTRLNS--- 225
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
L + +N + L P + LS L L I NQ S + A+ L KL L+ NQI +
Sbjct: 226 LKIGNNKITD-LSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKXLNVGSNQISDI 280
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
LS L+ L L +N++ + L+NLTTL LS N + I PL SL
Sbjct: 281 S--VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD-----IRPLASLS 333
Query: 365 E 365
+
Sbjct: 334 K 334
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 33/189 (17%)
Query: 98 SLLDCTLSNVTVLPGKF---LEGVTLHGLVISSGELKNISDGAF----IGLSSPLQALGL 150
S +D + + + + GK L+ G+ +SS L N F SPL ++ L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464
Query: 151 PNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD 210
N L+ +P ++L K EN +FK L +DL +NKL LS D
Sbjct: 465 XGNXLTEIPKNSL------------------KDENENFKNTYLLTSIDLRFNKLTKLSDD 506
Query: 211 CLA-PLVTLRVLRLQGNRLTVSVVAALQ-------GLRSVTDLDLSHNLLAGPLGPSTVP 262
A L L + L N + L G+R+ D + L P G + P
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566
Query: 263 RLSSLKVLS 271
L+ L++ S
Sbjct: 567 SLTQLQIGS 575
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 122/294 (41%), Gaps = 24/294 (8%)
Query: 91 LEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGL 150
L+ +++ L+C + + F + L L ++ ++ I F G + ++ L
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIP-ANFCGFTEQVENLSF 384
Query: 151 PNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK--------LENTSFKGLSSLNFLDLSYN 202
+N L +P A +D S+N++ L+ T FKG+ +++ ++LS N
Sbjct: 385 AHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNN 443
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP 262
++ ++ + L + L GN LT +L+ D + N L S
Sbjct: 444 QISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK--------DENENFKNTYLLTSIDL 495
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
R + L LS + F + L G+D L+ S L + + + D
Sbjct: 496 RFNKLTKLS---DDFRATTLPYLVGID-LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
NR + + +LT L + N +R + + ITP S+ +++ D+ +IS++
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-ITPNISVLDIK-DNPNISID 603
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
+ N+I LE F L+ L+ LDL +N++ + L+ LT L L+ N L+++ +
Sbjct: 38 YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 357 ITPLKSLQELRLDDN 371
L+SL + L +N
Sbjct: 98 FDNLRSLTHIWLLNN 112
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
T +VL L NR+T L +T LDL +N L L +L+ L LS+ N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDN 88
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQID 302
Q S+ RGA L LT + +N D
Sbjct: 89 QLKSIPRGAFDNLRSLTHIWLLNNPWD 115
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L P RL+ L L + +NQ + + G L +LT LS + NQ+ + +F L +L
Sbjct: 45 LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSL 104
Query: 316 SHLDLAHN 323
+H+ L +N
Sbjct: 105 THIWLLNN 112
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L L N++ KLE F L+ L LDL N+L L L L L L N+L
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 233 VAALQGLRSVTDLDLSHN 250
A LRS+T + L +N
Sbjct: 95 RGAFDNLRSLTHIWLLNN 112
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
+T L L NRI + L+ LT LDL +N L L + L L +L L+DN
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 373 ISMEPECIYVGFNTMDLELIYSGVW 397
+ P + ++ + + W
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNNPW 114
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 631 DSRYVKLQATTI-LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
D+R KL+ L+ L L + +NQ + + G L +LT LS + NQ+ + +F
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 690 SNV 692
N+
Sbjct: 99 DNL 101
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
L P L+ L L++A NQ +++ G L KLT L+ H NQ+ + F L +L
Sbjct: 55 LEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSL 114
Query: 316 SHLDLAHN 323
+H+ L +N
Sbjct: 115 THIYLFNN 122
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P+ +P ++ +VL + NQ + + G L +LT L+ NQ+ L F L+ L+H
Sbjct: 35 PAGIP--TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTH 92
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L L N++ ++ +L +LT + L +N D++
Sbjct: 93 LALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L L NQ+ KLE F L+ L +L+L+ N+L L L L L L N+L
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 233 VAALQGLRSVTDLDLSHN 250
+ L+S+T + L +N
Sbjct: 105 MGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L+ L L++A NQ +++ G L KLT L+ H NQ+ + F N+
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNL 111
>pdb|3RIO|A Chain A, Crystal Structure Of Glct Cat-Prdi
Length = 180
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
G TV ++ + VL +H+++S V L G + Q DV+ED + + L
Sbjct: 13 GSFTVKKVLNNNVLIASHHKYSEV---VLIG----KGIGFGKKQDDVIEDKGYDKMFILK 65
Query: 317 H----------LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
LD ++V +S + H+SN T L+ + ALT + +K Q+
Sbjct: 66 DEKEQKQFKKLLDYVDEKLVDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQG 125
Query: 367 RLDDNDISMEPECIY 381
N ME + +Y
Sbjct: 126 FDMKNPFLMETQSLY 140
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
PNL L+LS+NQ+ + + L ++ L L+ NKL + LA L L L L N+
Sbjct: 66 PNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK 121
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
V +++L+ L+ + L L HN ++ G +P+L S L + +N+ + + L+
Sbjct: 122 --VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES---LYLGNNKITDIT--VLSR 174
Query: 288 LDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
L KL +LS NQI D++ L+ L +L L+ N I + +LA L NL L+L
Sbjct: 175 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLEL 227
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT----LSQDCLAPLVTLRVL 221
L P L L ++ + +L+ LDLS N + +S C TL+VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206
Query: 222 RLQ--GNRLTVSVVAALQGLR-SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
L+ G V +AL R + LDLSHN L G + S L L+++
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
V +G A KL+ L +N++D + S L + +L L N
Sbjct: 267 QVPKGLPA---KLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGN 306
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS-HNQLYKLENTSFKGL 191
I +F+GLS L L N + + SA LD L+LS +N L +L N F G
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
S LD+S ++ +L L L LR
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRA 230
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 33/167 (19%)
Query: 116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175
+G+ + +S E++ F SP+ + L NNL + +P ++L P
Sbjct: 671 KGINASTVTLSYNEIQKFPTELF-ATGSPISTIILSNNLXTSIPENSLKP---------- 719
Query: 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL-----------RLQ 224
++ ++K L +DL +NKL +LS D A TL L
Sbjct: 720 --------KDGNYKNTYLLTTIDLRFNKLTSLSDDFRA--TTLPYLSNXDVSYNCFSSFP 769
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L S + A G+R D + + L P G +T P L L++ S
Sbjct: 770 TQPLNSSQLKAF-GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 30/212 (14%)
Query: 153 NLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL 212
N L P SA L LD HN++ LE +F L L L YN++ + +D
Sbjct: 558 NNLEEFPASASLQKXVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFC 615
Query: 213 APLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
A + L N+L + + + + +D S+N + S + +S
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIG-----------SEGRNIS 664
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
+ + + + ++++ +N+I F S +S + L++N ++
Sbjct: 665 CSXDDYKGIN---------ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPEN 715
Query: 332 SL----AHLSN---LTTLDLSHNFLRALTQDL 356
SL + N LTT+DL N L +L+ D
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 52/250 (20%)
Query: 169 NLDRLDLSHN-QLYKLENTSFK-------GLSSLNFLDLSYNKLMTLSQDCLAPLVTLR- 219
N+ +LDL+ N QL L+ +S K L+ L + D S N L L L+ L TL
Sbjct: 202 NITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261
Query: 220 ----VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
+L + T + +G R + +LD++HN + L +L
Sbjct: 262 IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN--------------TQLYLLDC--- 304
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
Q + + L+ KL L ++ + L+ LD++HN + AH
Sbjct: 305 QAAGITELDLSQNPKLVYLYLNNTE--------------LTELDVSHNTKLKSLSCVNAH 350
Query: 336 LSNLTTLD----LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
+ + +++ L++NF A Q + P ++L L I++ P+ + N M++E
Sbjct: 351 IQDFSSVGKIPALNNNF-EAEGQTITMPKETLTNNSL---TIAVSPDLLDQFGNPMNIEP 406
Query: 392 IYSGVWRHST 401
GV+ +T
Sbjct: 407 GDGGVYDQAT 416
>pdb|3OG9|A Chain A, Structure Of Yahd With Malic Acid
pdb|3OG9|B Chain B, Structure Of Yahd With Malic Acid
Length = 209
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR--LDDNDISMEPECI 380
++I+A G L LD H FL D+I P K+ +L+ L+D+ +E
Sbjct: 128 DKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYES 187
Query: 381 YVGFNTMDLELIYSGVWRHST 401
+G E++ + W T
Sbjct: 188 SLGHQLTQEEVLAAKKWLTET 208
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS-HNQLYKLENTSFKGL 191
I +F+GLS L L N + + A LD L+LS +N L +L N F G
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQEIHNCAFN--GTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
S LD+S ++ +L L L LR
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLR 229
>pdb|3CSY|I Chain I, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|K Chain K, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|M Chain M, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|O Chain O, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 334
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 432 ILDQSALVLGCSEILALVPTLTSQPLS--YVTSLRANVTGLGTVQV----------YVQL 479
IL Q+ S L T P S Y T++R TG GT +V YVQL
Sbjct: 170 ILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNEVEYLFEVDNLTYVQL 229
Query: 480 WTNYDPNCLLTI--TLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEF 532
+ + P LL + T+Y G K +N + +L W ++ T+GE+
Sbjct: 230 ESRFTPQFLLQLNETIYTSG-----KRSNTT------GKLIWKVNPEIDTTIGEW 273
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-------IDVLEDHSFRALSTLSHL 318
LKVLSIA + + LTSL N + L H F A+ L+
Sbjct: 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205
Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
+ V A A +LDLSHN LRA
Sbjct: 206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 173 LDLSHNQLYKLENTSFKGL---SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
LDLSHN L N S S+LN L+LS+ L + + A LRVL L NRL
Sbjct: 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA---KLRVLDLSSNRL 284
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
+RVL L LTV + L+ L VT LDLSHN L P + L L+VL + N
Sbjct: 443 VRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNAL 498
Query: 278 SSVRRGALAGLDKLTSL 294
+V +A L +L L
Sbjct: 499 ENV--DGVANLPRLQEL 513
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
+RVL L LTV + L+ L VT LDLSHN L P + L L+VL + N
Sbjct: 443 VRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNAL 498
Query: 278 SSVRRGALAGLDKLTSL 294
+V +A L +L L
Sbjct: 499 ENV--DGVANLPRLQEL 513
>pdb|2D2M|D Chain D, Structure Of An Extracellular Giant Hemoglobin Of The
Gutless Beard Worm Oligobrachia Mashikoi
pdb|2D2N|D Chain D, Structure Of An Extracellular Giant Hemoglobin Of The
Gutless Beard Worm Oligobrachia Mashikoi
Length = 145
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLS 337
S LSHL+ H I V+GA++ HLS
Sbjct: 87 SLLSHLNAQHRAISGVTGAAVTHLS 111
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL----RSVTDLDL 247
L LS NKL L Q P TLRVL L +T S ++L L RS+ +LDL
Sbjct: 342 LQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDL 401
Query: 248 SHNLLAGP 255
S+N + P
Sbjct: 402 SNNCVGDP 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,607,907
Number of Sequences: 62578
Number of extensions: 593289
Number of successful extensions: 2364
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 642
length of query: 694
length of database: 14,973,337
effective HSP length: 106
effective length of query: 588
effective length of database: 8,340,069
effective search space: 4903960572
effective search space used: 4903960572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)