Query psy8879
Match_columns 694
No_of_seqs 572 out of 4553
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 21:41:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 2.3E-44 8E-49 403.4 29.8 430 55-501 2-472 (477)
2 3zyj_A Leucine-rich repeat-con 100.0 2.5E-42 8.5E-47 383.8 25.2 364 98-504 46-431 (440)
3 3zyi_A Leucine-rich repeat-con 100.0 1.6E-41 5.6E-46 378.5 23.2 362 99-503 58-440 (452)
4 3v47_A TOLL-like receptor 5B a 100.0 9.8E-37 3.4E-41 338.7 22.0 347 55-416 3-439 (455)
5 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-36 1.1E-40 346.6 26.2 348 63-419 26-615 (635)
6 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-35 3E-39 335.0 26.3 161 259-419 418-593 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.4E-34 8E-39 331.4 25.3 320 96-419 255-595 (606)
8 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-34 4.5E-39 331.4 22.9 334 64-413 28-546 (562)
9 2z7x_B TOLL-like receptor 1, v 100.0 9.3E-34 3.2E-38 320.6 21.2 176 237-416 321-512 (520)
10 2z80_A TOLL-like receptor 2, v 100.0 3E-34 1E-38 309.2 15.6 299 101-416 37-345 (353)
11 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-33 2.3E-37 323.8 27.0 306 113-419 324-659 (680)
12 2id5_A Lingo-1, leucine rich r 100.0 1.5E-32 5.2E-37 307.5 23.1 282 94-378 55-337 (477)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-33 1.2E-37 317.5 17.5 332 74-415 10-540 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 2E-32 7E-37 312.2 20.3 153 264-416 395-562 (570)
15 2z66_A Variable lymphocyte rec 100.0 2.2E-32 7.5E-37 288.3 17.6 281 99-419 11-296 (306)
16 3o6n_A APL1; leucine-rich repe 100.0 7.7E-32 2.6E-36 294.1 21.3 307 95-413 45-377 (390)
17 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-32 1.6E-36 324.9 20.0 106 309-416 476-593 (844)
18 3v47_A TOLL-like receptor 5B a 100.0 2.3E-31 7.9E-36 295.4 23.4 279 98-382 13-368 (455)
19 1xku_A Decorin; proteoglycan, 100.0 1.3E-30 4.4E-35 278.0 26.7 267 97-375 33-307 (330)
20 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-30 3.7E-35 279.0 25.7 265 97-374 35-307 (332)
21 3t6q_A CD180 antigen; protein- 100.0 6.9E-31 2.4E-35 302.4 23.6 304 63-377 7-366 (606)
22 3oja_B Anopheles plasmodium-re 100.0 8.9E-31 3E-35 302.2 20.4 307 95-413 51-383 (597)
23 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-30 1.4E-34 300.1 25.5 308 64-382 2-350 (680)
24 3rgz_A Protein brassinosteroid 100.0 1.9E-30 6.4E-35 308.1 21.1 280 96-378 369-721 (768)
25 1ozn_A Reticulon 4 receptor; N 100.0 2.2E-30 7.4E-35 270.5 18.5 254 121-417 14-268 (285)
26 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-29 1.3E-33 266.9 23.0 297 53-372 24-331 (332)
27 1xku_A Decorin; proteoglycan, 100.0 3.6E-29 1.2E-33 266.8 22.1 298 53-372 22-330 (330)
28 3rgz_A Protein brassinosteroid 100.0 7.8E-30 2.7E-34 302.8 18.0 286 95-382 318-701 (768)
29 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-29 1.1E-33 300.3 23.3 303 64-378 2-379 (844)
30 4eco_A Uncharacterized protein 100.0 1.4E-29 4.8E-34 294.4 17.7 232 144-382 207-478 (636)
31 2z7x_B TOLL-like receptor 1, v 100.0 9.6E-29 3.3E-33 279.4 20.9 143 71-228 4-150 (520)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-28 4.3E-33 281.7 21.9 148 97-252 33-181 (562)
33 4fmz_A Internalin; leucine ric 100.0 6.3E-28 2.2E-32 258.4 25.8 264 94-378 65-328 (347)
34 4eco_A Uncharacterized protein 100.0 5.4E-29 1.9E-33 289.5 17.6 292 81-382 195-534 (636)
35 1ogq_A PGIP-2, polygalacturona 100.0 6E-29 2.1E-33 263.9 15.9 247 96-372 51-302 (313)
36 2z62_A TOLL-like receptor 4, v 100.0 1.6E-28 5.5E-33 255.1 18.8 251 147-415 11-267 (276)
37 2z63_A TOLL-like receptor 4, v 100.0 3.6E-28 1.2E-32 277.0 22.8 143 236-378 392-535 (570)
38 4fmz_A Internalin; leucine ric 100.0 1.6E-27 5.5E-32 255.2 25.2 260 94-374 87-346 (347)
39 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-28 5.1E-33 256.6 16.5 251 98-354 14-265 (285)
40 3o6n_A APL1; leucine-rich repe 100.0 3E-28 1E-32 265.7 18.8 253 116-380 43-314 (390)
41 2xot_A Amphoterin-induced prot 100.0 3.3E-29 1.1E-33 271.3 10.7 290 171-502 21-333 (361)
42 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-27 4.6E-32 274.7 24.5 280 94-376 75-582 (635)
43 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-29 1.4E-33 265.3 10.9 228 145-376 52-283 (313)
44 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-28 8.1E-33 277.7 17.8 199 100-303 10-210 (549)
45 1o6v_A Internalin A; bacterial 100.0 2.9E-27 1E-31 264.3 24.2 261 94-376 67-346 (466)
46 2z80_A TOLL-like receptor 2, v 100.0 1.1E-28 3.9E-33 265.6 12.2 273 74-354 36-318 (353)
47 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-28 1.9E-32 278.2 18.7 274 93-377 283-561 (606)
48 4ecn_A Leucine-rich repeat pro 100.0 9.1E-28 3.1E-32 286.7 19.9 289 84-382 440-774 (876)
49 3oja_B Anopheles plasmodium-re 99.9 2.4E-27 8.3E-32 273.4 18.8 253 116-380 49-320 (597)
50 4ecn_A Leucine-rich repeat pro 99.9 1.3E-26 4.5E-31 276.7 25.3 273 96-380 549-846 (876)
51 1o6v_A Internalin A; bacterial 99.9 2.4E-26 8.3E-31 256.9 25.2 262 95-378 90-370 (466)
52 2o6q_A Variable lymphocyte rec 99.9 1.1E-26 3.7E-31 241.0 20.2 229 144-413 17-249 (270)
53 3zyj_A Leucine-rich repeat-con 99.9 5.6E-27 1.9E-31 260.1 18.7 258 53-326 32-292 (440)
54 1p9a_G Platelet glycoprotein I 99.9 1.1E-26 3.7E-31 244.2 17.6 217 163-400 6-222 (290)
55 3bz5_A Internalin-J, INLJ; leu 99.9 9.2E-26 3.1E-30 252.2 25.7 254 95-376 64-333 (457)
56 3zyi_A Leucine-rich repeat-con 99.9 2E-26 6.8E-31 256.6 18.6 257 53-325 43-302 (452)
57 2z66_A Variable lymphocyte rec 99.9 1E-26 3.5E-31 244.9 14.3 257 56-328 1-263 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.9 9.9E-27 3.4E-31 247.1 9.2 214 145-374 36-250 (317)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-27 9.6E-32 251.3 3.3 259 96-371 11-272 (317)
60 1wwl_A Monocyte differentiatio 99.9 2.4E-27 8.1E-32 251.3 2.4 248 96-376 44-311 (312)
61 2z62_A TOLL-like receptor 4, v 99.9 6.6E-25 2.3E-29 227.8 16.8 222 99-350 11-237 (276)
62 1wwl_A Monocyte differentiatio 99.9 5E-27 1.7E-31 248.8 0.6 224 145-378 45-291 (312)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-24 7.5E-29 249.3 22.6 268 63-380 34-303 (622)
64 2o6q_A Variable lymphocyte rec 99.9 2.1E-24 7.3E-29 223.7 19.9 201 96-301 17-217 (270)
65 4fcg_A Uncharacterized protein 99.9 6.1E-25 2.1E-29 234.8 15.8 236 118-376 81-316 (328)
66 3oja_A Leucine-rich immune mol 99.9 7.1E-26 2.4E-30 255.1 8.9 215 144-374 35-250 (487)
67 4fcg_A Uncharacterized protein 99.9 1.7E-24 5.8E-29 231.3 17.5 228 95-353 81-317 (328)
68 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-24 1.9E-28 237.7 22.2 252 95-375 42-300 (457)
69 3oja_A Leucine-rich immune mol 99.9 6.9E-25 2.3E-29 247.0 12.5 244 109-369 21-270 (487)
70 1jl5_A Outer protein YOPM; leu 99.9 2.2E-23 7.6E-28 232.7 22.8 243 95-377 131-373 (454)
71 2xwt_C Thyrotropin receptor; s 99.9 2.2E-24 7.7E-29 219.1 12.9 196 144-371 32-236 (239)
72 2xwt_C Thyrotropin receptor; s 99.9 7.2E-24 2.4E-28 215.4 15.5 191 107-306 23-222 (239)
73 3m19_A Variable lymphocyte rec 99.9 7.2E-24 2.5E-28 217.3 15.1 170 217-399 36-206 (251)
74 1jl5_A Outer protein YOPM; leu 99.9 1.1E-22 3.8E-27 227.0 24.8 246 96-378 92-354 (454)
75 3g06_A SSPH2 (leucine-rich rep 99.9 7.8E-24 2.7E-28 244.7 13.1 226 95-359 81-306 (622)
76 4ay9_X Follicle-stimulating ho 99.9 2.5E-23 8.4E-28 224.1 15.3 237 100-370 14-255 (350)
77 4ay9_X Follicle-stimulating ho 99.9 1.5E-23 5.2E-28 225.7 12.5 223 147-378 13-241 (350)
78 1z7x_W Ribonuclease inhibitor; 99.9 8.5E-25 2.9E-29 242.8 0.7 280 96-377 86-414 (461)
79 3rfs_A Internalin B, repeat mo 99.9 7.9E-23 2.7E-27 212.2 14.7 174 145-324 43-216 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.4E-27 212.4 16.8 197 145-350 12-208 (290)
81 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-24 8.5E-29 239.0 2.9 277 96-374 29-354 (461)
82 3rfs_A Internalin B, repeat mo 99.9 9E-23 3.1E-27 211.8 14.0 227 97-338 21-247 (272)
83 1h6u_A Internalin H; cell adhe 99.9 2.1E-22 7.3E-27 213.1 15.4 192 145-378 43-234 (308)
84 4glp_A Monocyte differentiatio 99.9 7.9E-23 2.7E-27 216.2 9.7 230 118-375 64-308 (310)
85 2v9t_B SLIT homolog 2 protein 99.9 2.1E-22 7.1E-27 202.8 11.4 165 241-419 33-197 (220)
86 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6.2E-26 205.9 17.0 208 102-353 26-233 (308)
87 3goz_A Leucine-rich repeat-con 99.9 3.8E-23 1.3E-27 223.5 2.9 256 100-375 3-298 (362)
88 2v70_A SLIT-2, SLIT homolog 2 99.9 6.9E-22 2.4E-26 199.0 11.7 164 242-418 34-197 (220)
89 4glp_A Monocyte differentiatio 99.9 5.2E-22 1.8E-26 209.9 11.3 224 96-326 65-307 (310)
90 3m19_A Variable lymphocyte rec 99.9 7.1E-21 2.4E-25 194.9 18.4 178 96-278 15-192 (251)
91 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4E-27 219.7 4.9 234 96-329 23-300 (362)
92 2ca6_A RAN GTPase-activating p 99.8 5.6E-23 1.9E-27 223.8 -2.4 258 97-376 11-318 (386)
93 2o6s_A Variable lymphocyte rec 99.8 2.9E-20 1E-24 184.6 15.9 177 100-288 12-188 (208)
94 2ast_B S-phase kinase-associat 99.8 6.1E-22 2.1E-26 210.6 3.7 253 120-381 49-313 (336)
95 3cvr_A Invasion plasmid antige 99.8 1.2E-20 4E-25 215.8 12.1 186 119-335 60-252 (571)
96 2ast_B S-phase kinase-associat 99.8 1.1E-21 3.8E-26 208.6 3.1 254 96-359 48-315 (336)
97 2ca6_A RAN GTPase-activating p 99.8 1.6E-21 5.5E-26 212.2 4.3 216 163-380 28-298 (386)
98 2ifg_A High affinity nerve gro 99.8 5.4E-20 1.8E-24 197.1 13.1 212 268-498 11-241 (347)
99 3e6j_A Variable lymphocyte rec 99.8 9.5E-20 3.3E-24 184.4 13.5 161 240-414 40-211 (229)
100 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.6E-24 179.2 14.5 149 121-275 10-158 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 3.4E-19 1.2E-23 179.3 14.4 151 99-253 15-165 (220)
102 2xot_A Amphoterin-induced prot 99.8 3E-19 1E-23 193.0 13.2 176 121-302 21-202 (361)
103 1h6t_A Internalin B; cell adhe 99.8 3E-19 1E-23 187.4 12.2 191 145-377 26-216 (291)
104 3cvr_A Invasion plasmid antige 99.8 7.7E-19 2.6E-23 200.8 16.3 219 144-399 60-293 (571)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 7.4E-19 2.5E-23 176.8 14.2 152 99-254 15-167 (220)
106 1h6t_A Internalin B; cell adhe 99.8 4.2E-19 1.4E-23 186.3 12.5 188 120-326 26-213 (291)
107 2wfh_A SLIT homolog 2 protein 99.8 3E-19 1E-23 176.1 10.7 159 243-419 13-171 (193)
108 1m9s_A Internalin B; cell inva 99.8 1.7E-19 5.6E-24 208.1 8.4 170 144-353 44-213 (605)
109 4fdw_A Leucine rich hypothetic 99.8 2.7E-18 9.2E-23 188.5 17.0 251 118-384 113-368 (401)
110 3sb4_A Hypothetical leucine ri 99.8 1.8E-19 6E-24 192.1 6.3 238 117-367 48-327 (329)
111 1w8a_A SLIT protein; signaling 99.8 1.5E-18 5.3E-23 170.6 10.7 160 243-419 11-171 (192)
112 4fdw_A Leucine rich hypothetic 99.7 1.2E-17 4E-22 183.4 17.6 263 96-373 114-382 (401)
113 1m9s_A Internalin B; cell inva 99.7 1.5E-18 5E-23 200.2 10.6 194 145-380 23-216 (605)
114 3e6j_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 166.1 15.7 150 99-253 23-172 (229)
115 3sb4_A Hypothetical leucine ri 99.7 1.3E-18 4.5E-23 185.4 4.9 256 117-383 24-319 (329)
116 2o6r_A Variable lymphocyte rec 99.7 1.2E-17 4E-22 161.6 10.0 157 242-414 9-166 (177)
117 1xeu_A Internalin C; cellular 99.7 2.6E-18 8.8E-23 177.7 5.3 168 145-353 21-188 (263)
118 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.1E-22 171.3 10.2 167 97-280 21-187 (263)
119 3ogk_B Coronatine-insensitive 99.7 4E-18 1.4E-22 195.0 3.4 276 95-373 164-500 (592)
120 3ogk_B Coronatine-insensitive 99.7 2.4E-18 8.2E-23 196.9 1.6 280 95-379 192-531 (592)
121 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.1E-21 156.7 13.5 149 144-302 45-194 (197)
122 4ezg_A Putative uncharacterize 99.7 9E-17 3.1E-21 158.3 10.6 153 189-374 41-194 (197)
123 1w8a_A SLIT protein; signaling 99.7 3.8E-16 1.3E-20 153.5 13.1 131 98-232 11-142 (192)
124 2p1m_B Transport inhibitor res 99.7 1.1E-17 3.8E-22 191.2 0.9 183 190-374 287-494 (594)
125 4b8c_D Glucose-repressible alc 99.6 6.1E-17 2.1E-21 190.8 6.3 181 183-374 215-404 (727)
126 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 4.3E-20 150.1 14.1 127 99-230 14-140 (193)
127 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 146.4 14.5 131 99-233 11-141 (177)
128 2p1m_B Transport inhibitor res 99.6 2.2E-17 7.7E-22 188.7 1.1 158 215-374 288-469 (594)
129 2ifg_A High affinity nerve gro 99.6 1.3E-15 4.3E-20 163.0 13.5 105 220-328 12-118 (347)
130 1dce_A Protein (RAB geranylger 99.6 2.7E-18 9.4E-23 196.6 -8.2 120 242-367 443-566 (567)
131 3g39_A Variable lymphocyte rec 99.6 7.7E-16 2.6E-20 148.4 8.9 133 266-413 10-150 (170)
132 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.6E-20 145.6 9.6 138 239-379 23-165 (168)
133 4b8c_D Glucose-repressible alc 99.6 3.4E-16 1.1E-20 184.4 5.2 189 149-350 207-404 (727)
134 2r9u_A Variable lymphocyte rec 99.6 2.6E-15 9E-20 145.3 9.5 119 267-400 14-133 (174)
135 1dce_A Protein (RAB geranylger 99.6 2.1E-17 7E-22 189.3 -6.9 182 191-379 348-551 (567)
136 2ell_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 142.0 8.5 82 144-229 25-108 (168)
137 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4.2E-19 136.0 8.3 129 239-370 16-149 (149)
138 4fs7_A Uncharacterized protein 99.5 7.1E-14 2.4E-18 152.5 14.9 261 96-369 72-374 (394)
139 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.3E-19 135.9 6.3 83 169-253 18-101 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.3E-19 137.9 7.9 133 237-374 16-153 (176)
141 3g39_A Variable lymphocyte rec 99.5 2.3E-13 7.8E-18 131.0 12.3 104 99-230 13-116 (170)
142 4fs7_A Uncharacterized protein 99.5 3.9E-13 1.3E-17 146.6 15.5 264 107-383 59-364 (394)
143 1a9n_A U2A', U2A'; complex (nu 99.5 9.1E-14 3.1E-18 134.2 9.1 105 169-278 43-153 (176)
144 2r9u_A Variable lymphocyte rec 99.4 5.5E-13 1.9E-17 129.0 13.5 103 99-229 16-118 (174)
145 4gt6_A Cell surface protein; l 99.4 4.2E-12 1.4E-16 138.4 18.8 264 97-372 66-368 (394)
146 1ds9_A Outer arm dynein; leuci 99.4 2.8E-15 9.5E-20 147.7 -7.2 132 235-374 43-185 (198)
147 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 147.4 -7.8 132 212-351 44-186 (198)
148 4gt6_A Cell surface protein; l 99.4 1E-11 3.5E-16 135.3 17.4 263 108-383 52-355 (394)
149 4h09_A Hypothetical leucine ri 99.3 5E-11 1.7E-15 128.8 19.2 272 96-383 47-354 (379)
150 3un9_A NLR family member X1; l 99.2 1.6E-12 5.4E-17 141.1 0.9 167 191-358 71-260 (372)
151 3un9_A NLR family member X1; l 99.2 9.5E-13 3.2E-17 142.9 -2.2 168 168-336 72-262 (372)
152 4h09_A Hypothetical leucine ri 99.2 5.9E-10 2E-14 120.4 18.2 256 114-383 42-331 (379)
153 3rfe_A Platelet glycoprotein I 98.7 1.3E-08 4.4E-13 93.5 5.8 89 316-419 11-102 (130)
154 2ra8_A Uncharacterized protein 98.7 2.7E-08 9.1E-13 107.4 8.8 59 187-248 167-227 (362)
155 2ra8_A Uncharacterized protein 98.6 4.6E-08 1.6E-12 105.5 6.2 63 312-374 251-320 (362)
156 1io0_A Tropomodulin; LRR prote 98.1 5.9E-07 2E-11 87.3 2.4 89 286-374 62-164 (185)
157 3rw6_A Nuclear RNA export fact 98.1 2.6E-07 8.7E-12 95.3 -0.3 120 246-367 122-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.0 8.5E-07 2.9E-11 86.1 0.2 120 210-350 30-164 (185)
159 3rw6_A Nuclear RNA export fact 97.8 9E-06 3.1E-10 83.7 3.7 89 285-374 137-233 (267)
160 3e4g_A ATP synthase subunit S, 97.6 3.5E-05 1.2E-09 74.1 4.2 33 145-178 63-95 (176)
161 3e4g_A ATP synthase subunit S, 97.6 3.8E-05 1.3E-09 73.8 3.8 84 265-348 61-150 (176)
162 3rfe_A Platelet glycoprotein I 96.8 0.0021 7E-08 58.5 6.6 54 147-204 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0012 4E-08 64.6 4.6 88 285-372 66-168 (197)
164 4fa8_A Secreted protein BARF1; 96.7 0.0024 8.2E-08 62.4 6.8 68 432-500 118-196 (203)
165 2qsq_A Carcinoembryonic antige 96.4 0.0036 1.2E-07 55.2 5.6 36 461-496 62-98 (111)
166 3knb_A Titin; IG-like, titin, 96.4 0.0018 6.3E-08 55.5 3.7 29 472-500 64-93 (100)
167 3knb_B Obscurin-like protein 1 96.2 0.0025 8.7E-08 55.5 3.2 61 434-499 27-98 (107)
168 1g1c_A Immunoglobulin-like dom 96.0 0.0057 1.9E-07 51.4 4.6 29 472-500 63-92 (99)
169 2kkq_A Myotilin; unknown funct 95.9 0.0073 2.5E-07 53.0 5.1 27 472-498 74-101 (116)
170 2edj_A Roundabout homolog 2; K 95.8 0.0063 2.2E-07 51.4 4.1 61 436-500 24-92 (100)
171 3caf_A Fibroblast growth facto 95.8 0.0052 1.8E-07 51.8 3.2 33 470-502 64-97 (100)
172 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0064 2.2E-07 59.3 4.2 89 285-373 37-138 (197)
173 1wit_A Twitchin 18TH IGSF modu 95.7 0.0067 2.3E-07 50.6 3.7 32 470-501 57-89 (93)
174 1wwb_X Protein (brain derived 95.7 0.01 3.5E-07 50.9 5.0 32 471-502 62-94 (103)
175 2dlt_A Myosin binding protein 95.7 0.007 2.4E-07 51.9 3.9 43 445-492 39-85 (106)
176 3so5_A LIG-3, leucine-rich rep 95.7 0.0058 2E-07 52.0 3.2 27 470-496 75-102 (112)
177 1he7_A High affinity nerve gro 95.6 0.0088 3E-07 54.1 4.3 32 470-501 62-94 (126)
178 2eo9_A Roundabout homolog 1; b 95.5 0.0072 2.5E-07 52.8 3.4 49 445-497 40-89 (118)
179 3irg_A Titin; IG-like, titin, 95.5 0.0086 3E-07 50.1 3.7 31 471-501 63-94 (100)
180 3irg_B Obscurin-like protein 1 95.5 0.0072 2.5E-07 51.5 3.2 58 436-498 29-97 (107)
181 1waa_A Titin; metal binding pr 95.4 0.0057 1.9E-07 51.7 2.2 44 445-493 36-83 (93)
182 2kdg_A Myotilin; immonoglobuli 95.4 0.0067 2.3E-07 51.0 2.6 29 472-500 63-92 (100)
183 2cqv_A MLCK, myosin light chai 95.3 0.0094 3.2E-07 51.7 3.4 55 445-502 39-95 (114)
184 2yr3_A Myosin light chain kina 95.3 0.013 4.6E-07 49.2 4.1 60 434-498 25-92 (99)
185 3puc_A Titin; I-SET IG-like do 95.3 0.012 4.2E-07 49.2 3.8 28 472-499 63-91 (99)
186 1u2h_A APEG-1, aortic preferen 95.2 0.015 5.1E-07 48.7 4.3 29 472-500 63-92 (99)
187 3s35_X Vascular endothelial gr 95.2 0.012 4.1E-07 51.6 3.8 32 469-500 72-104 (122)
188 2dm2_A Palladin; beta-sandwich 95.2 0.01 3.4E-07 51.1 3.1 51 445-497 40-93 (110)
189 3kvq_A Vascular endothelial gr 95.2 0.013 4.5E-07 50.0 3.8 51 445-499 42-93 (108)
190 2ckn_A Basic fibroblast growth 95.2 0.014 4.7E-07 48.9 3.8 50 445-500 40-90 (95)
191 3qp3_A Titin; I-SET IG-like, s 95.1 0.025 8.4E-07 47.8 5.3 28 472-499 65-93 (103)
192 2dm3_A KIAA0992 protein, palla 95.1 0.0093 3.2E-07 51.2 2.5 26 472-497 67-93 (110)
193 1wwc_A Protein (NT-3 growth fa 95.0 0.023 7.7E-07 49.6 4.9 33 470-502 64-97 (118)
194 2v9t_A Roundabout homolog 1; s 94.8 0.012 4.2E-07 51.1 2.6 74 434-507 23-109 (117)
195 1fhg_A Telokin; immunoglobulin 94.7 0.016 5.5E-07 53.4 3.3 61 436-499 57-127 (154)
196 1nct_A Titin; cell adhesion, g 94.7 0.01 3.5E-07 51.1 1.7 31 470-500 69-100 (106)
197 4hwu_A Fibroblast growth facto 94.7 0.017 5.7E-07 48.3 3.0 29 470-498 50-79 (95)
198 3rbg_A Cytotoxic and regulator 94.6 0.016 5.5E-07 51.3 2.8 23 470-492 65-88 (124)
199 1gxe_A Myosin binding protein 94.5 0.011 3.9E-07 54.1 1.7 32 472-503 104-136 (139)
200 2e7c_A Myosin-binding protein 94.5 0.024 8.3E-07 49.4 3.7 32 472-503 80-112 (118)
201 2dm7_A KIAA1556 protein; beta- 94.4 0.013 4.6E-07 50.1 1.8 43 445-492 38-84 (108)
202 3m45_A Cell adhesion molecule 94.4 0.018 6.1E-07 48.9 2.6 23 469-491 69-92 (108)
203 2cr3_A Basic fibroblast growth 94.2 0.029 1E-06 47.3 3.4 47 445-497 34-81 (99)
204 2yuz_A Myosin-binding protein 94.2 0.015 5.3E-07 49.6 1.6 21 472-492 62-83 (100)
205 1gl4_B Basement membrane-speci 94.2 0.034 1.2E-06 46.6 3.8 31 469-499 60-91 (98)
206 2bk8_A Connectin, M1, titin he 94.1 0.048 1.6E-06 45.5 4.6 29 472-500 59-88 (97)
207 1x44_A Myosin-binding protein 93.8 0.056 1.9E-06 45.8 4.5 21 471-491 64-85 (103)
208 2lvc_A Obscurin-like protein 1 93.7 0.014 5E-07 49.1 0.6 43 445-492 37-83 (91)
209 3cx2_A Myosin-binding protein 93.6 0.017 5.8E-07 49.7 0.9 32 470-501 71-103 (108)
210 3qr2_A Basigin; CD147, EMMPRIN 93.5 0.021 7E-07 51.4 1.2 28 469-496 88-116 (137)
211 4gos_A V-SET domain-containing 93.4 0.019 6.6E-07 51.3 0.9 32 472-503 85-117 (125)
212 2dav_A SLOW MYBP-C, myosin-bin 93.0 0.027 9.3E-07 50.8 1.3 26 471-496 75-101 (126)
213 2a38_A Titin; Z1Z2, structural 92.9 0.12 4.3E-06 48.1 5.8 29 472-500 160-189 (194)
214 2eny_A Obscurin; beta-sandwich 92.7 0.043 1.5E-06 47.0 2.1 21 472-492 66-87 (104)
215 2v44_A NCAM2, neural cell adhe 92.6 0.043 1.5E-06 51.4 2.0 56 437-495 113-176 (189)
216 1eaj_A Coxsackie virus and ade 92.5 0.039 1.3E-06 47.8 1.5 28 471-498 89-117 (126)
217 3p2t_A Leukocyte immunoglobuli 92.5 0.093 3.2E-06 49.7 4.3 26 469-494 153-179 (196)
218 1pd6_A Cardiac MYBP-C;, myosin 92.3 0.044 1.5E-06 47.0 1.7 43 445-491 47-93 (104)
219 2yuv_A Myosin-binding protein 92.3 0.28 9.6E-06 41.0 6.8 18 472-489 64-82 (100)
220 2x1w_L Vascular endothelial gr 92.3 0.094 3.2E-06 50.5 4.2 29 471-499 171-200 (213)
221 2edf_A Obscurin; beta-sandwich 92.3 0.031 1.1E-06 47.3 0.6 20 472-491 64-84 (103)
222 2vr9_A Roundabout 1, ROBO; imm 92.2 0.074 2.5E-06 50.9 3.4 42 463-504 162-204 (217)
223 2r15_A Myomesin-1; sarcomeric 92.2 0.084 2.9E-06 50.1 3.6 30 472-501 175-205 (212)
224 2iep_A Muscle-specific kinase 92.0 0.069 2.4E-06 49.8 2.8 57 436-497 116-180 (192)
225 3bfo_A Mucosa-associated lymph 92.0 0.067 2.3E-06 44.1 2.4 26 471-496 50-76 (91)
226 2cpc_A KIAA0657 protein; immun 92.0 0.044 1.5E-06 47.1 1.2 20 472-491 69-89 (113)
227 3rbs_A Myomesin-1; immunoglobu 92.0 0.05 1.7E-06 52.8 1.8 30 471-500 171-201 (207)
228 2yd6_A PTPRD protein; hydrolas 91.9 0.11 3.7E-06 49.9 4.1 37 470-506 166-203 (212)
229 3ejj_X Macrophage colony-stimu 91.8 0.096 3.3E-06 52.4 3.7 33 470-502 244-277 (289)
230 2edh_A Obscurin; structural ge 91.8 0.14 4.8E-06 43.9 4.3 40 445-489 49-92 (113)
231 2ny1_B T-cell surface glycopro 91.7 0.2 6.9E-06 46.6 5.7 32 469-500 141-173 (184)
232 4f80_A Butyrophilin subfamily 91.7 0.16 5.4E-06 49.2 5.0 60 445-510 151-214 (226)
233 2v5t_A NCAM2, N-CAM 2, neural 91.6 0.15 5.1E-06 47.3 4.5 32 470-501 151-183 (189)
234 2fbo_J V1V2;, variable region- 91.5 0.062 2.1E-06 52.6 1.9 34 468-501 210-244 (250)
235 1qz1_A Neural cell adhesion mo 91.5 0.11 3.8E-06 52.0 3.9 68 434-502 210-286 (291)
236 4frw_A Poliovirus receptor-rel 91.5 0.11 3.7E-06 49.1 3.5 37 471-508 175-212 (218)
237 2cry_A KIN of IRRE-like protei 91.5 0.049 1.7E-06 47.7 1.0 28 472-499 77-106 (122)
238 2eo1_A OBSCN protein, cDNA FLJ 91.4 0.062 2.1E-06 45.3 1.5 21 472-492 67-88 (102)
239 3mtr_A N-CAM-1, NCAM-1, neural 91.4 0.12 4.3E-06 49.5 3.9 33 470-502 75-108 (215)
240 2va4_A NCAM2, N-CAM 2, neural 91.3 0.23 7.9E-06 46.1 5.6 30 471-500 157-187 (192)
241 1ncn_A T lymphocyte activation 91.3 0.074 2.5E-06 45.6 1.9 33 470-502 68-101 (110)
242 2edn_A Myosin-binding protein 91.2 0.039 1.3E-06 49.1 0.1 27 470-496 79-106 (118)
243 2j8h_A Titin, connectin; cardi 91.2 0.17 5.9E-06 47.4 4.6 25 472-496 63-88 (197)
244 1hng_A CD2; T lymphocyte adhes 91.1 0.052 1.8E-06 51.0 0.8 35 462-496 52-87 (176)
245 3r4d_A CEA-related cell adhesi 91.1 0.18 6.3E-06 47.6 4.7 31 463-493 63-94 (208)
246 2edk_A Myosin-binding protein 91.0 0.067 2.3E-06 45.1 1.3 20 472-491 68-88 (101)
247 1epf_A NCAM, protein (neural c 90.9 0.082 2.8E-06 49.4 2.0 56 436-494 116-179 (191)
248 3r4d_A CEA-related cell adhesi 90.8 0.11 3.7E-06 49.2 2.7 57 436-497 126-190 (208)
249 2yd1_A Tyrosine-protein phosph 90.8 0.14 4.6E-06 49.1 3.4 29 470-498 162-191 (212)
250 4fqp_A Poliovirus receptor; im 90.7 0.19 6.5E-06 51.2 4.7 30 470-499 267-297 (313)
251 3lcy_A Titin; A-BAND, IG tande 90.7 0.32 1.1E-05 45.2 6.0 57 435-496 22-89 (197)
252 2lu7_A Obscurin-like protein 1 90.6 0.08 2.7E-06 43.7 1.4 20 472-491 52-72 (84)
253 3kld_A Contactin 4, axcam, BIG 90.6 0.15 5.1E-06 54.0 3.8 61 434-500 309-377 (384)
254 2jll_A NCAM2, neural cell adhe 90.5 0.19 6.5E-06 52.7 4.6 27 470-496 62-89 (389)
255 1z9m_A GAPA225; nectin-like, I 90.4 0.12 4E-06 46.9 2.5 23 470-492 102-125 (145)
256 1pko_A Myelin oligodendrocyte 90.4 0.075 2.6E-06 47.7 1.1 28 471-498 85-113 (139)
257 2y25_A Myomesin; structural pr 90.3 0.18 6.2E-06 51.0 4.1 30 472-501 280-310 (317)
258 1jbj_A CD3 epsilon and gamma e 90.2 0.07 2.4E-06 50.5 0.8 28 469-496 151-179 (186)
259 1ugn_A LIR1, leukocyte immunog 90.2 0.11 3.9E-06 49.2 2.2 24 470-493 156-180 (198)
260 3mjg_X Beta-type platelet-deri 90.1 0.18 6.1E-06 50.5 3.8 34 470-503 241-275 (289)
261 2o26_X MAST/stem cell growth f 90.1 0.16 5.6E-06 50.9 3.5 32 468-499 249-281 (290)
262 2wim_A N-CAM 2, NCAM2, neural 90.1 0.23 7.7E-06 49.7 4.6 33 470-502 247-280 (291)
263 2e6p_A Obscurin-like protein 1 90.1 0.058 2E-06 45.6 0.1 21 472-492 66-87 (104)
264 3udw_C Poliovirus receptor; PV 90.0 0.097 3.3E-06 44.8 1.5 22 470-491 78-100 (118)
265 2yd6_A PTPRD protein; hydrolas 89.9 0.24 8.2E-06 47.3 4.4 27 471-497 63-91 (212)
266 2ens_A Advanced glycosylation 89.8 0.085 2.9E-06 44.0 0.9 25 470-494 56-81 (96)
267 3s97_C Contactin-1; carbonic a 89.7 0.31 1.1E-05 45.5 4.9 31 470-500 164-195 (201)
268 3mj6_A Junctional adhesion mol 89.7 0.23 7.8E-06 49.1 4.2 31 469-499 199-230 (268)
269 4dkd_C Macrophage colony-stimu 89.6 0.27 9.3E-06 49.1 4.7 31 470-500 244-275 (292)
270 2nzi_A Titin; IG-domain, FNIII 89.5 0.27 9.2E-06 49.6 4.6 24 472-495 63-87 (305)
271 4gjt_B Poliovirus receptor-rel 89.4 0.15 5E-06 45.0 2.2 21 471-491 80-101 (123)
272 1hnf_A CD2; T lymphocyte adhes 89.4 0.09 3.1E-06 50.1 0.9 33 462-494 57-90 (182)
273 3ojm_B Fibroblast growth facto 89.4 0.18 6.2E-06 48.3 3.0 52 445-497 51-103 (231)
274 3jz7_A MCAR, CAR, coxsackievir 89.4 0.15 5.1E-06 48.1 2.4 32 469-500 174-206 (214)
275 3p2t_A Leukocyte immunoglobuli 89.3 0.17 5.8E-06 47.8 2.7 26 469-494 56-82 (196)
276 3q0h_A T cell immunoreceptor w 89.2 0.14 4.8E-06 44.8 1.9 28 464-491 64-92 (117)
277 1epf_A NCAM, protein (neural c 89.2 0.36 1.2E-05 44.8 4.9 25 469-493 60-85 (191)
278 3laf_A Deleted in colorectal c 89.1 0.22 7.7E-06 52.3 3.8 63 434-501 326-396 (403)
279 1h5b_A Murine T cell receptor 89.1 0.16 5.6E-06 43.8 2.2 21 472-492 72-93 (113)
280 1oll_A NK receptor; immune sys 89.0 0.24 8.3E-06 46.6 3.6 25 469-493 147-172 (188)
281 3grw_A Fibroblast growth facto 88.9 0.21 7.3E-06 48.4 3.2 53 445-498 47-100 (241)
282 1vca_A VCAM-D1,2, human vascul 88.8 0.31 1.1E-05 46.7 4.3 26 471-496 54-80 (202)
283 2k1m_A Myosin-binding protein 88.8 0.15 5.2E-06 42.3 1.8 18 472-489 64-82 (95)
284 3eow_R Poliovirus receptor; im 88.7 0.76 2.6E-05 44.0 7.1 24 470-493 77-101 (221)
285 2dku_A KIAA1556 protein; beta- 88.7 0.25 8.6E-06 41.4 3.1 39 445-488 39-81 (103)
286 2v5t_A NCAM2, N-CAM 2, neural 88.7 0.16 5.3E-06 47.1 1.9 46 445-493 34-80 (189)
287 2d3v_A Leukocyte immunoglobuli 88.7 0.14 4.7E-06 48.6 1.6 23 471-493 156-179 (196)
288 4f80_A Butyrophilin subfamily 88.5 0.23 8E-06 48.0 3.2 29 471-499 83-112 (226)
289 3ojm_B Fibroblast growth facto 88.5 0.25 8.5E-06 47.3 3.3 35 469-503 183-218 (231)
290 3kld_A Contactin 4, axcam, BIG 88.4 0.22 7.7E-06 52.6 3.2 59 434-497 219-285 (384)
291 2rik_A Titin; I-SET IG fold, p 88.3 0.26 8.7E-06 49.2 3.4 29 472-500 249-278 (284)
292 1cs6_A Axonin-1; neural cell a 88.2 0.28 9.7E-06 51.3 3.8 61 435-501 309-377 (382)
293 2pet_A Lutheran blood group gl 88.2 0.23 7.7E-06 47.8 2.8 27 467-493 73-100 (231)
294 3sgj_C Human FCG3A receptor; r 88.1 0.33 1.1E-05 46.6 3.9 23 470-492 136-159 (204)
295 4i0k_A CD276 antigen; immunogl 88.1 0.81 2.8E-05 43.6 6.8 24 474-497 174-197 (222)
296 1itb_B Type 1 interleukin-1 re 88.1 0.38 1.3E-05 48.8 4.6 32 471-502 277-310 (315)
297 2c5d_C AXL oncogene, tyrosine- 88.1 0.35 1.2E-05 45.2 4.0 25 471-495 68-93 (195)
298 3b5h_A Cervical EMMPRIN, HAB18 88.0 0.34 1.2E-05 44.8 3.9 30 472-501 147-178 (184)
299 2wv3_A Neuroplastin; igcam, me 87.9 0.21 7.2E-06 46.7 2.4 29 472-500 154-184 (190)
300 2x1w_L Vascular endothelial gr 87.9 0.44 1.5E-05 45.7 4.7 27 467-493 60-87 (213)
301 3bp6_B Programmed cell death 1 87.9 0.25 8.4E-06 46.7 2.8 27 471-497 67-94 (202)
302 3grw_A Fibroblast growth facto 87.8 0.42 1.4E-05 46.2 4.5 33 470-502 181-214 (241)
303 2j8h_A Titin, connectin; cardi 87.7 0.21 7.2E-06 46.7 2.2 31 471-501 160-192 (197)
304 2va4_A NCAM2, N-CAM 2, neural 87.6 0.46 1.6E-05 44.0 4.5 28 470-497 57-85 (192)
305 1fnl_A Low affinity immunoglob 87.6 0.38 1.3E-05 44.5 3.9 25 470-494 136-161 (175)
306 2e7b_A Obscurin; IG-like domai 87.5 0.22 7.6E-06 41.8 2.0 39 445-488 39-81 (103)
307 1jhl_L IGG1-kappa D11.15 FV (l 87.4 0.15 5E-06 43.6 0.8 22 471-492 71-93 (108)
308 3lcy_A Titin; A-BAND, IG tande 87.4 0.25 8.6E-06 45.9 2.5 31 471-501 159-191 (197)
309 2yd1_A Tyrosine-protein phosph 87.4 0.32 1.1E-05 46.3 3.4 24 472-495 65-90 (212)
310 2jjs_C Leukocyte surface antig 87.4 0.15 5E-06 46.0 0.8 35 470-504 77-113 (127)
311 3ry4_A Low affinity immunoglob 87.3 0.46 1.6E-05 43.3 4.3 26 470-495 133-159 (170)
312 1bih_A Hemolin; insect immunit 87.3 0.36 1.2E-05 50.5 4.0 62 433-501 322-391 (395)
313 2cr6_A KIAA1556 protein, obscu 87.3 0.13 4.4E-06 44.6 0.4 17 472-488 71-88 (115)
314 2if7_A SLAM family member 6; N 87.3 0.15 5.3E-06 48.4 1.0 32 464-495 63-95 (193)
315 2oyp_A Hepatitis A virus cellu 87.2 0.1 3.5E-06 44.2 -0.4 24 471-494 72-96 (109)
316 2yd9_A Receptor-type tyrosine- 87.2 0.85 2.9E-05 46.0 6.6 51 445-497 140-191 (304)
317 2ywz_A NEW antigen receptor va 87.1 0.26 9E-06 42.4 2.3 22 470-491 65-87 (111)
318 3sbw_C Programmed cell death 1 87.0 1.6 5.3E-05 41.4 8.0 24 476-499 181-204 (222)
319 2v9r_A Roundabout homolog 1; p 86.9 0.21 7.2E-06 47.2 1.7 29 470-498 164-193 (212)
320 3nl4_L Antigen binding fragmen 86.9 0.63 2.1E-05 44.1 5.1 22 472-493 72-94 (213)
321 2y23_A Myomesin; structural pr 86.8 0.21 7.3E-06 50.4 1.7 30 471-500 276-306 (312)
322 1f97_A Junction adhesion molec 86.8 0.25 8.6E-06 46.6 2.1 28 469-496 167-195 (212)
323 2a38_A Titin; Z1Z2, structural 86.7 0.43 1.5E-05 44.3 3.8 26 471-496 63-89 (194)
324 3rbs_A Myomesin-1; immunoglobu 86.7 0.29 1E-05 47.2 2.6 18 474-491 65-82 (207)
325 2edo_A CD48 antigen; beta-sand 86.6 0.17 5.7E-06 44.7 0.7 29 464-492 65-95 (121)
326 2gi7_A GPVI protein; IG-like d 86.6 0.28 9.5E-06 46.0 2.4 24 470-493 143-167 (184)
327 3bp6_B Programmed cell death 1 86.5 0.61 2.1E-05 43.9 4.8 28 474-501 161-188 (202)
328 3vh8_G Killer cell immunoglobu 86.5 0.82 2.8E-05 46.5 6.1 26 470-495 173-199 (316)
329 2gi7_A GPVI protein; IG-like d 86.5 0.5 1.7E-05 44.2 4.1 27 468-494 49-76 (184)
330 2v44_A NCAM2, neural cell adhe 86.2 0.41 1.4E-05 44.4 3.3 47 445-495 33-83 (189)
331 2oz4_A Intercellular adhesion 86.2 0.37 1.3E-05 47.7 3.2 32 469-501 228-259 (265)
332 3r08_E T-cell surface glycopro 86.1 0.14 4.7E-06 42.4 -0.1 23 469-491 42-66 (82)
333 3pv7_A B7-H6, IG-like domain-c 86.1 0.19 6.4E-06 49.4 0.8 26 472-497 83-109 (248)
334 3p3y_A Neurofascin; IG domains 86.0 0.48 1.7E-05 49.7 4.1 68 434-504 326-401 (404)
335 4hwn_A FC receptor-like A; FCR 86.0 0.5 1.7E-05 40.6 3.4 23 470-492 59-82 (108)
336 1dr9_A B7-1 (CD80), T lymphocy 85.8 0.21 7.3E-06 47.1 1.1 28 468-495 62-90 (201)
337 4fmk_A Poliovirus receptor-rel 85.8 0.24 8.1E-06 46.9 1.4 28 469-496 81-109 (225)
338 4fom_A Poliovirus receptor-rel 85.7 0.24 8.3E-06 50.1 1.5 26 474-499 268-293 (308)
339 4fa8_A Secreted protein BARF1; 85.6 0.22 7.6E-06 48.1 1.1 28 470-497 68-96 (203)
340 1jbj_A CD3 epsilon and gamma e 85.5 0.18 6.1E-06 47.6 0.4 26 470-495 43-70 (186)
341 1neu_A Myelin P0 protein; stru 85.5 0.23 8E-06 43.0 1.1 26 469-494 79-105 (124)
342 1f2q_A High affinity immunoglo 85.5 0.68 2.3E-05 42.7 4.4 23 470-492 133-156 (176)
343 2ptt_A CD48 antigen; CD244, CD 85.5 0.2 6.9E-06 42.8 0.7 25 469-493 71-96 (110)
344 2vsd_A CHIR AB1; immune system 85.4 0.55 1.9E-05 40.1 3.4 21 472-492 57-78 (105)
345 2wv3_A Neuroplastin; igcam, me 85.0 0.59 2E-05 43.5 3.8 24 469-492 54-78 (190)
346 4fmk_A Poliovirus receptor-rel 85.0 1 3.5E-05 42.3 5.6 26 472-497 182-208 (225)
347 2e6q_A Obscurin-like protein 1 84.9 0.87 3E-05 39.8 4.5 46 445-490 38-92 (112)
348 2c5d_C AXL oncogene, tyrosine- 84.8 0.57 2E-05 43.7 3.6 27 469-497 156-183 (195)
349 3u83_A Poliovirus receptor-rel 84.8 0.53 1.8E-05 48.0 3.6 61 432-500 244-314 (331)
350 3r0n_A Poliovirus receptor-rel 84.8 0.38 1.3E-05 42.1 2.2 20 472-491 94-114 (128)
351 1xt5_A Variable region-contain 84.7 0.25 8.5E-06 43.6 0.9 25 470-494 91-116 (135)
352 1nkr_A P58-CL42 KIR; inhibitor 84.5 0.87 3E-05 43.1 4.8 21 470-492 162-183 (201)
353 2d3v_A Leukocyte immunoglobuli 84.5 0.37 1.3E-05 45.5 2.1 26 469-494 56-82 (196)
354 3r06_A Anti-mouse CD3epsilon a 84.5 0.45 1.5E-05 45.2 2.7 23 470-492 70-93 (213)
355 3qs7_E FL cytokine receptor; i 84.5 1.9 6.5E-05 46.4 8.0 23 470-492 289-312 (423)
356 1qz1_A Neural cell adhesion mo 84.4 0.66 2.2E-05 46.2 4.0 26 469-494 60-86 (291)
357 1rhf_A Tyrosine-protein kinase 84.3 0.32 1.1E-05 44.8 1.6 22 471-492 60-82 (182)
358 1sy6_A T-cell surface glycopro 84.3 0.15 5.1E-06 49.2 -0.9 26 470-495 165-192 (204)
359 3jz7_A MCAR, CAR, coxsackievir 84.3 0.28 9.7E-06 46.2 1.1 28 470-497 83-111 (214)
360 1qfw_M FV, antibody (anti beta 84.2 0.21 7.3E-06 42.7 0.2 30 471-500 71-104 (108)
361 2pnd_A V-SET and immunoglobuli 84.2 0.31 1E-05 42.5 1.3 24 470-493 77-101 (119)
362 1pew_A JTO2, A lambda-6 type i 84.1 0.46 1.6E-05 40.6 2.3 29 471-499 72-104 (109)
363 3sgj_C Human FCG3A receptor; r 84.0 0.46 1.6E-05 45.6 2.5 22 471-492 54-76 (204)
364 3tv3_L PGT128 light chain, IG 83.9 0.81 2.8E-05 43.3 4.3 25 469-493 66-91 (211)
365 4i0k_A CD276 antigen; immunogl 83.8 0.62 2.1E-05 44.4 3.4 23 470-492 71-94 (222)
366 3o4o_C Interleukin-1 receptor 83.7 0.47 1.6E-05 48.7 2.6 28 472-499 299-328 (339)
367 1u3h_A T-cell receptor alpha-c 84.2 0.22 7.4E-06 42.9 0.0 22 471-492 71-93 (110)
368 3s97_C Contactin-1; carbonic a 83.7 0.37 1.3E-05 44.9 1.7 25 469-493 64-89 (201)
369 2coq_A NEW antigen receptor va 83.6 0.42 1.4E-05 40.8 1.9 22 470-491 65-87 (108)
370 2yd9_A Receptor-type tyrosine- 83.6 0.55 1.9E-05 47.4 3.1 26 471-496 63-90 (304)
371 1rhf_A Tyrosine-protein kinase 83.5 0.86 2.9E-05 41.9 4.1 27 469-497 146-173 (182)
372 2dru_A Chimera of CD48 antigen 83.5 0.27 9.1E-06 46.4 0.6 30 464-493 61-92 (180)
373 3qs9_E FL cytokine receptor; i 83.5 0.75 2.6E-05 51.3 4.4 31 469-499 376-407 (527)
374 1nbq_A JAM, junctional adhesio 83.3 0.29 9.8E-06 46.0 0.7 28 469-496 169-197 (209)
375 3qs7_E FL cytokine receptor; i 83.3 0.51 1.7E-05 51.0 2.8 24 474-497 107-130 (423)
376 2d9c_A Signal-regulatory prote 83.3 0.49 1.7E-05 42.1 2.3 23 470-492 78-101 (136)
377 1hng_A CD2; T lymphocyte adhes 83.1 0.77 2.6E-05 42.8 3.6 32 474-508 144-175 (176)
378 3mjg_X Beta-type platelet-deri 83.0 0.5 1.7E-05 47.2 2.4 25 471-495 51-76 (289)
379 3laf_A Deleted in colorectal c 83.0 0.85 2.9E-05 47.8 4.4 59 436-498 237-303 (403)
380 3mj6_A Junctional adhesion mol 83.0 0.65 2.2E-05 45.7 3.3 22 471-492 84-106 (268)
381 2ocw_A Polymeric-immunoglobuli 82.9 1.4 4.6E-05 49.1 6.2 28 471-498 509-537 (585)
382 2rik_A Titin; I-SET IG fold, p 82.8 0.75 2.6E-05 45.6 3.7 26 470-495 60-86 (284)
383 1oaq_L Light chain; antibody, 82.7 0.67 2.3E-05 40.3 2.9 22 471-492 73-95 (120)
384 1dr9_A B7-1 (CD80), T lymphocy 82.7 1.4 4.7E-05 41.3 5.3 28 475-502 170-197 (201)
385 2v5m_A Dscam; neurobiology SPL 82.7 0.51 1.7E-05 49.3 2.5 28 470-497 269-297 (388)
386 3k0w_A Mucosa-associated lymph 82.7 0.55 1.9E-05 45.1 2.5 25 471-495 165-190 (218)
387 2v9r_A Roundabout homolog 1; p 82.6 0.74 2.5E-05 43.2 3.4 22 474-495 76-97 (212)
388 2vr9_A Roundabout 1, ROBO; imm 82.3 0.58 2E-05 44.5 2.5 23 474-496 73-95 (217)
389 2r15_A Myomesin-1; sarcomeric 82.2 0.52 1.8E-05 44.5 2.1 23 473-495 61-84 (212)
390 3tf7_C 42F3 MUT7 SCFV (42F3 al 82.1 0.53 1.8E-05 46.6 2.2 37 471-507 210-251 (256)
391 1xiw_B T-cell surface glycopro 81.9 0.5 1.7E-05 38.8 1.5 28 470-497 34-62 (79)
392 2jju_A Signal regulatory prote 81.7 0.54 1.8E-05 41.5 1.9 23 470-492 73-96 (127)
393 1nkr_A P58-CL42 KIR; inhibitor 81.6 0.59 2E-05 44.3 2.2 23 470-492 62-85 (201)
394 1p6f_A NKP46, natural cytotoxi 81.5 1.2 4.1E-05 44.1 4.6 25 469-493 150-175 (242)
395 2or8_A Hepatitis A virus cellu 81.4 0.22 7.4E-06 42.8 -0.9 23 471-493 73-96 (116)
396 1ry7_B FGFR-3, fibroblast grow 81.4 0.51 1.8E-05 48.2 1.9 28 470-497 179-207 (334)
397 2q20_A VK1 O18/O8 germline lig 81.3 0.27 9.1E-06 42.1 -0.3 22 471-492 73-95 (109)
398 3d9a_L Light chain of hyhel10 81.2 0.67 2.3E-05 43.9 2.5 22 472-493 72-94 (213)
399 1ry7_B FGFR-3, fibroblast grow 81.1 0.56 1.9E-05 48.0 2.0 30 472-501 292-322 (334)
400 1pz5_B Heavy chain of FAB (SYA 81.1 1.5 5.3E-05 41.8 5.1 21 472-492 82-103 (220)
401 3pl6_D MBP peptide / T-cell re 81.1 1.1 3.8E-05 44.3 4.2 22 470-491 99-121 (268)
402 2xzc_L FAB A.17 light chain; i 81.0 0.62 2.1E-05 44.4 2.2 29 472-500 180-209 (216)
403 3khq_A B-cell antigen receptor 80.9 0.29 1E-05 44.0 -0.2 22 472-493 78-100 (133)
404 1uct_A Immunoglobulin alpha FC 80.8 0.58 2E-05 45.5 1.9 24 469-492 155-179 (218)
405 2y25_A Myomesin; structural pr 80.8 0.67 2.3E-05 46.7 2.5 27 470-496 60-87 (317)
406 3moq_A NEW antigen receptor va 80.8 0.39 1.3E-05 42.9 0.6 30 470-499 65-95 (126)
407 1f97_A Junction adhesion molec 80.7 0.63 2.2E-05 43.7 2.1 29 465-494 60-89 (212)
408 2jll_A NCAM2, neural cell adhe 80.7 2.6 8.9E-05 43.8 7.1 29 471-499 158-187 (389)
409 2iep_A Muscle-specific kinase 80.7 0.84 2.9E-05 42.2 2.9 31 465-495 55-87 (192)
410 1tvd_A T cell receptor, ES204 80.6 0.59 2E-05 40.3 1.7 20 472-491 77-97 (116)
411 3mj8_L Stimulatory hamster ant 80.5 1.1 3.8E-05 42.4 3.7 26 469-494 68-94 (213)
412 2p1y_A Bispecific alpha/beta T 80.3 0.49 1.7E-05 45.8 1.2 22 471-492 199-221 (238)
413 4dep_C Interleukin-1 receptor 80.3 0.77 2.6E-05 47.3 2.8 25 470-494 78-103 (349)
414 3auv_A SC-DSFV derived from th 80.3 0.52 1.8E-05 47.3 1.4 21 472-492 214-235 (276)
415 2e27_L Anti-ciguatoxin antibod 80.2 0.41 1.4E-05 41.9 0.5 21 471-491 73-94 (119)
416 2wim_A N-CAM 2, NCAM2, neural 80.2 0.8 2.8E-05 45.5 2.8 24 472-495 61-85 (291)
417 3bdb_A Novel immune-type recep 80.1 0.77 2.6E-05 41.3 2.3 33 472-504 77-113 (137)
418 3tf7_C 42F3 MUT7 SCFV (42F3 al 80.1 1.3 4.4E-05 43.7 4.2 24 470-493 75-99 (256)
419 1ccz_A Protein (CD58); LFA-3, 79.9 0.29 9.8E-06 45.7 -0.7 26 469-494 58-84 (171)
420 3d9a_L Light chain of hyhel10 79.8 0.54 1.8E-05 44.6 1.2 26 471-496 177-203 (213)
421 1j05_L T84.66 antibody, anti-C 79.7 0.34 1.1E-05 41.6 -0.3 22 471-492 75-97 (111)
422 1i3g_L Antibody FV fragment; a 79.6 0.41 1.4E-05 41.1 0.3 21 471-491 74-95 (111)
423 3qs9_E FL cytokine receptor; i 79.6 1.3 4.5E-05 49.3 4.6 58 435-492 242-312 (527)
424 1c1e_H Catalytic antibody 1E9 79.5 0.98 3.3E-05 43.1 3.0 24 470-493 78-102 (219)
425 2nzi_A Titin; IG-domain, FNIII 79.4 2 7E-05 42.9 5.6 33 471-503 160-194 (305)
426 3ux9_B SCFV antibody; five hel 79.3 0.62 2.1E-05 45.8 1.6 21 472-492 214-235 (256)
427 1fo0_A Protein (BM3.3 T cell r 79.2 0.75 2.6E-05 39.7 1.9 20 472-491 75-95 (116)
428 1gsm_A Madcam-1, mucosal addre 79.2 0.6 2E-05 45.7 1.3 29 469-497 57-86 (210)
429 1fnl_A Low affinity immunoglob 79.1 0.66 2.3E-05 42.8 1.6 26 469-494 52-78 (175)
430 1lk3_L 9D7 light chain; antige 79.0 0.81 2.8E-05 43.4 2.3 23 471-493 70-93 (210)
431 2pkd_A SLAM family member 5; s 79.0 0.58 2E-05 40.7 1.1 33 461-493 61-95 (111)
432 1uct_A Immunoglobulin alpha FC 79.0 0.74 2.5E-05 44.7 2.0 21 472-492 65-86 (218)
433 3s96_B 3B5H10 FAB light chain; 78.8 0.72 2.5E-05 43.8 1.8 25 470-494 74-99 (218)
434 4dzb_B Vbeta2 (MAIT T cell rec 78.8 1.6 5.3E-05 42.5 4.3 22 471-492 77-99 (246)
435 1i8k_A Epidermal growth factor 78.8 0.39 1.3E-05 40.9 -0.1 20 472-491 72-92 (107)
436 1z7z_I Intercellular adhesion 78.8 1 3.4E-05 48.3 3.1 30 471-501 415-444 (450)
437 3ejj_X Macrophage colony-stimu 78.8 1.2 4.2E-05 44.1 3.6 52 436-491 105-165 (289)
438 3dmk_A DOWN syndrome cell adhe 78.7 0.75 2.6E-05 53.7 2.2 36 469-504 771-807 (816)
439 3sob_L Antibody light chain; b 78.6 0.83 2.9E-05 43.9 2.2 25 469-493 92-117 (237)
440 1zox_A CLM-1; IG-superfamily, 78.5 0.42 1.4E-05 41.0 0.0 21 472-492 75-96 (113)
441 1svz_A Immunoglobulin;, single 78.4 0.86 2.9E-05 44.5 2.3 22 471-492 206-228 (247)
442 2ny1_B T-cell surface glycopro 78.4 0.52 1.8E-05 43.7 0.6 22 473-494 70-92 (184)
443 3mj8_L Stimulatory hamster ant 78.3 1.4 4.9E-05 41.5 3.8 30 471-500 177-207 (213)
444 3p3y_A Neurofascin; IG domains 78.2 0.91 3.1E-05 47.5 2.5 29 470-498 274-303 (404)
445 3bkj_L WO2 IGG2A FAB fragment 78.1 0.57 2E-05 46.1 0.9 23 474-496 219-241 (252)
446 1nbq_A JAM, junctional adhesio 78.1 0.7 2.4E-05 43.2 1.5 28 465-493 63-91 (209)
447 1fo0_B Protein (BM3.3 T cell r 78.0 1.7 5.8E-05 37.3 3.8 20 472-491 75-95 (112)
448 2znx_A SCFV; fluorotryptohpan, 77.9 0.36 1.2E-05 47.4 -0.7 32 471-502 200-233 (242)
449 1sq2_N Novel antigen receptor; 77.8 0.51 1.8E-05 40.8 0.4 21 471-491 66-87 (113)
450 2yz1_A Tyrosine-protein phosph 77.7 0.54 1.8E-05 40.7 0.5 22 471-492 78-100 (120)
451 2wng_A Tyrosine-protein phosph 77.7 1.4 4.7E-05 45.0 3.7 23 474-496 287-309 (327)
452 3b43_A Titin; I-SET IG fold, e 77.6 0.82 2.8E-05 51.2 2.1 66 435-502 492-566 (570)
453 1ypz_E T cell receptor delta, 77.5 2.3 7.8E-05 40.7 5.0 23 471-493 71-94 (207)
454 3esu_F Antibody 14B7* light ch 77.4 0.86 2.9E-05 44.5 2.0 20 472-491 211-231 (250)
455 1q0x_L FAB 9B1, light chain; a 77.4 1.1 3.9E-05 42.3 2.8 27 474-500 183-209 (212)
456 3v2a_R Vascular endothelial gr 77.4 0.47 1.6E-05 54.7 0.0 61 435-500 681-750 (772)
457 3b43_A Titin; I-SET IG fold, e 77.4 1.3 4.6E-05 49.4 3.8 61 434-497 305-374 (570)
458 2j6e_L IGM, FAB light chain; a 77.3 0.85 2.9E-05 43.9 1.9 24 471-494 91-115 (234)
459 3noi_A Natural cytotoxicity tr 77.3 0.97 3.3E-05 39.3 2.1 32 471-502 81-117 (120)
460 1xau_A B- and T-lymphocyte att 77.3 2.6 8.8E-05 36.9 4.6 18 474-491 83-100 (122)
461 1wio_A CD4, T-cell surface gly 77.1 2.3 8E-05 44.0 5.3 24 469-492 140-164 (363)
462 3to4_D NKT vbeta2 (mouse varia 76.9 3 0.0001 40.9 5.8 29 464-492 65-96 (253)
463 3uzq_A Anti-dengue MAB 4E11; d 76.8 1 3.5E-05 44.3 2.3 20 473-492 82-102 (253)
464 1nfd_E H57 FAB; complex (immun 76.6 1.5 5.1E-05 41.5 3.3 21 471-491 69-90 (212)
465 2v5m_A Dscam; neurobiology SPL 76.5 1.1 3.6E-05 46.8 2.5 49 445-493 138-188 (388)
466 3auv_A SC-DSFV derived from th 76.5 1.1 3.7E-05 44.9 2.4 21 472-492 83-104 (276)
467 3qib_D 2B4 beta chain; IG doma 76.5 2 6.7E-05 42.6 4.4 22 470-491 100-122 (270)
468 3o3u_N Maltose-binding peripla 76.5 0.51 1.7E-05 52.8 -0.1 34 463-496 424-458 (581)
469 3sbw_C Programmed cell death 1 76.4 0.63 2.1E-05 44.3 0.6 20 472-491 81-101 (222)
470 1mqk_L Antibody 7E2 FV fragmen 76.3 0.45 1.5E-05 41.7 -0.5 23 470-492 70-93 (120)
471 2qhl_A Novel immune-type recep 76.3 1 3.6E-05 38.5 1.9 20 472-491 77-97 (111)
472 1lk3_L 9D7 light chain; antige 76.3 0.93 3.2E-05 43.0 1.7 24 472-495 177-201 (210)
473 3nfj_J T cell receptor beta ch 76.1 1.4 4.7E-05 43.0 3.0 21 471-491 74-95 (245)
474 3k0w_A Mucosa-associated lymph 76.1 0.96 3.3E-05 43.3 1.8 25 470-494 64-89 (218)
475 1b6u_A KIR2DL3, P58 killer cel 76.0 0.84 2.9E-05 45.8 1.4 22 470-491 61-83 (257)
476 3sob_L Antibody light chain; b 75.8 0.95 3.3E-05 43.5 1.7 31 474-504 204-234 (237)
477 2wng_A Tyrosine-protein phosph 75.7 1.2 4.3E-05 45.3 2.7 23 470-492 73-96 (327)
478 2j6e_L IGM, FAB light chain; a 75.7 0.54 1.8E-05 45.4 -0.1 30 472-501 200-230 (234)
479 1eeq_A Kappa-4 immunoglobulin 75.6 0.61 2.1E-05 40.1 0.2 20 472-491 78-98 (114)
480 1oll_A NK receptor; immune sys 75.6 0.65 2.2E-05 43.5 0.5 23 470-492 56-79 (188)
481 3omz_A Human vdelta1 gamma del 75.6 1.7 5.9E-05 42.7 3.6 24 469-492 77-101 (259)
482 2rgs_A I, IG gamma-2B heavy ch 75.6 1.2 4.1E-05 42.9 2.4 25 471-495 76-101 (218)
483 1ugn_A LIR1, leukocyte immunog 75.5 0.68 2.3E-05 43.6 0.5 25 469-493 56-81 (198)
484 2ghw_B Anti-SARS SCFV antibody 75.3 0.72 2.4E-05 45.0 0.7 22 471-492 81-103 (247)
485 3bae_H WO2 IGG2A FAB fragment 75.3 1.8 6.3E-05 41.7 3.7 23 471-493 80-103 (228)
486 3eow_R Poliovirus receptor; im 75.2 0.96 3.3E-05 43.2 1.5 30 471-500 176-206 (221)
487 2xt1_B Camelid VHH 9; viral pr 74.9 0.52 1.8E-05 41.4 -0.4 31 471-501 81-112 (121)
488 2z35_A T-cell receptor alpha-c 74.7 1.3 4.4E-05 37.9 2.1 20 471-490 72-92 (112)
489 1mju_H Immunoglobulin MS6-12; 74.6 1.6 5.3E-05 42.3 3.0 23 470-492 78-101 (227)
490 2lz0_A Uncharacterized protein 74.6 4.9 0.00017 34.2 5.7 46 154-201 7-52 (100)
491 3juy_B 3B3 single chain varian 74.5 2.3 7.9E-05 41.7 4.2 21 472-492 86-107 (256)
492 3rjd_A High affinity immunoglo 74.5 0.55 1.9E-05 45.9 -0.4 29 469-497 221-250 (262)
493 1dlf_L Anti-dansyl immunoglobu 74.5 0.7 2.4E-05 39.7 0.3 21 472-492 77-98 (113)
494 3vh8_G Killer cell immunoglobu 74.5 1.2 4.1E-05 45.3 2.1 21 471-493 274-295 (316)
495 2ec8_A MAST/stem cell growth f 74.4 1.5 5.2E-05 48.1 3.1 31 468-498 270-301 (524)
496 3t0v_A Immunoglobulin variable 74.4 1.4 4.9E-05 38.8 2.4 22 470-491 71-93 (123)
497 1u9k_A Triggering receptor exp 74.4 0.42 1.4E-05 41.3 -1.2 23 472-494 77-100 (114)
498 3oq3_B IFN-alpha/beta binding 74.3 2.1 7.1E-05 43.8 4.0 30 470-499 292-323 (329)
499 3fku_X Neutralizing antibody F 74.3 1.4 4.7E-05 44.4 2.5 60 432-491 12-100 (280)
500 1moe_A Anti-CEA MAB T84.66; an 74.2 2.2 7.6E-05 41.1 4.0 20 471-490 198-218 (240)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=403.39 Aligned_cols=430 Identities=24% Similarity=0.297 Sum_probs=345.5
Q ss_pred CCCCCCCCCCCCCC-CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCCC
Q psy8879 55 SCPSIKNDLCACDL-PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKN 132 (694)
Q Consensus 55 ~Cp~~~~~~C~C~~-~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~~ 132 (694)
.||. .|.|.. ...+.|... .+..+|..+. ..++.|++++|+++.++ ..|..+++|++|++++|.++.
T Consensus 2 ~Cp~----~C~C~~~~~~v~c~~~--~l~~ip~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 70 (477)
T 2id5_A 2 GCPP----RCECSAQDRAVLCHRK--RFVAVPEGIP-----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70 (477)
T ss_dssp CCST----TCEEETTTTEEECCSC--CCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cccC----CCeECCCCCEEEeCCC--CcCcCCCCCC-----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE
Confidence 5888 899964 357888653 4666676543 38999999999998884 578889999999999999999
Q ss_pred CCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCcccc
Q psy8879 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL 212 (694)
Q Consensus 133 i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f 212 (694)
+.+.+|.++. +|++|+|++|.++.++...|.++ ++|++|+|++|.++.+.+..|.++++|++|++++|.+.++.+..|
T Consensus 71 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 71 VEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp ECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred eChhhhhCCc-cCCEEECCCCcCCccCcccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence 9888888876 49999999999999999889999 999999999999999998999999999999999999999999999
Q ss_pred CCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccc
Q psy8879 213 APLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292 (694)
Q Consensus 213 ~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~ 292 (694)
..+++|++|++++|++++..+..+.++++|+.|++++|.+.+ +.+..+..+++|+.|++++|.+.+..+.......+|+
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 999999999999999998888889999999999999999986 5577899999999999999876554444444556899
Q ss_pred eecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372 (694)
Q Consensus 293 ~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~ 372 (694)
+|++++|+++.++...|..+++|+.|+|++|+++++.+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999999999988889999999999999999999988889999999999999999999988889999999999999999
Q ss_pred CCCCCccccc----------CCCC--CCcccccccccccccccCCccCccccCCcccc---------------eeeEEEE
Q psy8879 373 ISMEPECIYV----------GFNT--MDLELIYSGVWRHSTLLIPVMLSLCTRSSVVT---------------RYRYCVV 425 (694)
Q Consensus 373 L~~l~~~~f~----------~~Np--CdC~l~~~~~wl~~~~~~~~~~~~C~~~~~~~---------------~~~~~~v 425 (694)
++.+++..|. .+|| |||.+.|+..|.... ......+.|..+.... ..+..+.
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~-~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~ 386 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL-NFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR 386 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSS-CCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEE
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcc-ccCccCceeCCchHHcCCchhhCccccccceeEecccc
Confidence 9999887764 6888 999999998886521 1223345665532111 1122222
Q ss_pred EeecC----ccccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 426 LIEGS----NILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 426 ~~~~~----~~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
..... ...++..+.+.|.+ +.|....+..... ....++.+..+|+| |.+|+.+|+|.|+|+|+|..
T Consensus 387 i~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 464 (477)
T 2id5_A 387 IRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA--KSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG 464 (477)
T ss_dssp ESCCSCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC---------CEECTTSCEEESSCCSTTCEEEEEEEEETT
T ss_pred ccccccccEEEeCCCeEEEEEeccccCCCEEEEEECCcccccc--CCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCC
Confidence 22211 23344556677766 5666655444311 13446667778888 99999999999999999998
Q ss_pred eeccceeE
Q psy8879 494 YIDGDVIV 501 (694)
Q Consensus 494 ~~~~~~~~ 501 (694)
+.+...+.
T Consensus 465 g~~~~~~~ 472 (477)
T 2id5_A 465 GNDSMPAH 472 (477)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEE
Confidence 87755544
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=383.81 Aligned_cols=364 Identities=23% Similarity=0.307 Sum_probs=247.7
Q ss_pred eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879 98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH 177 (694)
Q Consensus 98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~ 177 (694)
..++|++.+++.+|..+. .+++.|++++|.++.+....|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTC-SSCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCC-ccCCEEECCC
Confidence 356777778888887654 3455556655555555555454433 25555555555555554445554 4555555555
Q ss_pred CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCC
Q psy8879 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG 257 (694)
Q Consensus 178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~ 257 (694)
|+++.+++..|.++++|++|+|++|.++.+++. .|.++++|++|++++|+..+.++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------------------------AFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT------------------------TTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHH------------------------HhhhCcccCEeCCCCCCCcceeC
Confidence 555555444445555555555555555444444 44445555555555533333344
Q ss_pred CCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhccc
Q psy8879 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337 (694)
Q Consensus 258 p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~ 337 (694)
+..|..+++|++|+|++|.++.++ .+..+++|++|+|++|+++.+++..|.++++|+.|+|++|+++++.+..|.+++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 556777777777777777777765 367788888899999988888888899999999999999999999999999999
Q ss_pred ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccC-CccCccccCCcc
Q psy8879 338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLI-PVMLSLCTRSSV 416 (694)
Q Consensus 338 ~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~-~~~~~~C~~~~~ 416 (694)
+|+.|+|++|+++++++..+..+++|+.|+|++|+|. |||++.||..|++..... ....+.|..|..
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~------------CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~ 323 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN------------CNCDILWLSWWIKDMAPSNTACCARCNTPPN 323 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE------------CSSTTHHHHHHHHTTSCSSCSCCCBEEESTT
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc------------CCCCchHHHHHHHhccccCCccccCCCChhH
Confidence 9999999999999999999999999999999999999 999999999999754322 223466776543
Q ss_pred cceee-----------EEEEEeecC---ccccceeeeeceeE------EEEeccCccccccceeEeeeeEEecccEE-EE
Q psy8879 417 VTRYR-----------YCVVLIEGS---NILDQSALVLGCSE------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QV 475 (694)
Q Consensus 417 ~~~~~-----------~~~v~~~~~---~~~~~~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~ 475 (694)
.++.. ..+.+.... ...++....+.|.+ +.|..+++... .......++.+..+|+| |.
T Consensus 324 l~g~~l~~l~~~~~~C~~P~i~~~~~~~~v~~G~~v~L~C~~~~p~p~i~W~~~~~~~~-~~~~~~~~~~~~~~~~L~I~ 402 (440)
T 3zyj_A 324 LKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVM-THGAYKVRIAVLSDGTLNFT 402 (440)
T ss_dssp TTTCBCC----CCSCCCCCCEEECCCCEEECTTSCCEECCEESSTTSEEEEECTTSCEE-ESSSCCSSEEECTTCCEEES
T ss_pred hcCccHhHhhhhhccCCCCcccccccceeeccCceEEEEeecCCCCCceEEEeCCCcee-eccCCCceEEEccCCeEEEc
Confidence 33221 112222211 23344556677766 77877666554 22223456777888888 99
Q ss_pred EEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879 476 YVQLWTNYDPNCLLTITLYIDGDVIVQKN 504 (694)
Q Consensus 476 ~v~~~d~G~YtC~~~n~~~~~~~~~~~~~ 504 (694)
+|+.+|+|.|+|+|+|.++.++..+...+
T Consensus 403 ~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v 431 (440)
T 3zyj_A 403 NVTVQDTGMYTCMVSNSVGNTTASATLNV 431 (440)
T ss_dssp SCCSTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred cCChhhCEEEEEEEEcCCCcEEEEEEEEE
Confidence 99999999999999999998776655443
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1.6e-41 Score=378.50 Aligned_cols=362 Identities=22% Similarity=0.267 Sum_probs=241.9
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++.+++.+|..+. ++++.|++++|.|+.+....|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++|
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSS
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCc-ccCCEEECCCC
Confidence 46677777777776553 3555666666665555555554433 25555555555555555455555 55555555555
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCC
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP 258 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p 258 (694)
+++.+++..|.++++|++|+|++|+++.+++..|..+++| ++|++++|+..+.+++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL------------------------MRLDLGELKKLEYISE 189 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC------------------------CEEECCCCTTCCEECT
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc------------------------cEEeCCCCCCccccCh
Confidence 5555554445555555555555555555444444444444 4455544333333445
Q ss_pred CCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccc
Q psy8879 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338 (694)
Q Consensus 259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~ 338 (694)
..|..+++|+.|+|++|++++++ .+..+++|++|+|++|.++.+++..|.++++|+.|+|++|+++++.+..|.++++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 56667777777777777777764 3677888888888888888888888999999999999999999999999999999
Q ss_pred cCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccC-CccCccccCCccc
Q psy8879 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLI-PVMLSLCTRSSVV 417 (694)
Q Consensus 339 L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~-~~~~~~C~~~~~~ 417 (694)
|+.|+|++|+++++++..+..+++|+.|+|++|+|. |||++.|+..|++..... ....+.|..|...
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~------------CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l 335 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN------------CDCDILWLAWWLREYIPTNSTCCGRCHAPMHM 335 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE------------CSTTTHHHHHHHHHHC---CCSSCBEEESTTT
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC------------CCCCchHHHHHHHHhCccCCccCcEeCCchHh
Confidence 999999999999999999999999999999999999 999999999998742211 1123445443221
Q ss_pred ce-----------eeEEEEEeec---CccccceeeeeceeE-----EEEeccCccccccceeEeeeeEEecccEE-EEEE
Q psy8879 418 TR-----------YRYCVVLIEG---SNILDQSALVLGCSE-----ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYV 477 (694)
Q Consensus 418 ~~-----------~~~~~v~~~~---~~~~~~~~~~l~c~~-----i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v 477 (694)
++ .+..+.+... ....++....+.|.+ +.|..+++... .......++.+..+|+| |.+|
T Consensus 336 ~g~~l~~~~~~~~~C~~P~i~~~~~~~~v~~G~~~~l~C~~~p~p~i~W~~~~~~~~-~~~~~~~~~~~~~~g~L~i~~v 414 (452)
T 3zyi_A 336 RGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-SHASRHPRISVLNDGTLNFSHV 414 (452)
T ss_dssp TTCBTTSCCGGGCCCCCCCCSBCCCCEECCTTSCCEECCBCCTTSEEEEECTTSCEE-CSSCCCSSCEECTTSCEECSSC
T ss_pred ccchhhccchhhhcccCcccccccccccccCCCEEEEEEeCCCCCcEEEEeCCCcEe-ccCCCCCCEEECCCCeEEEeec
Confidence 11 1111111111 123344556677755 77877666544 22223446677888989 9999
Q ss_pred EecCCCcceeEEEEEeeeccceeEEe
Q psy8879 478 QLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 478 ~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
+.+|+|.|+|+|+|.++.+...+...
T Consensus 415 ~~~D~G~Y~C~a~N~~G~~~~~~~l~ 440 (452)
T 3zyi_A 415 LLSDTGVYTCMVTNVAGNSNASAYLN 440 (452)
T ss_dssp CTTCCEEEEEEEECSSCEEEEEEEEE
T ss_pred CHHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 99999999999999998877665444
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.8e-37 Score=338.72 Aligned_cols=347 Identities=25% Similarity=0.331 Sum_probs=270.8
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCC-C
Q psy8879 55 SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELK-N 132 (694)
Q Consensus 55 ~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~-~ 132 (694)
.||. .|.|. ...+.|... .+..+|. +. ..++.||+++|.++.+ |..+..+++|++|++++|.+. .
T Consensus 3 p~~~----~c~~~-~~~~~c~~~--~l~~lp~-l~-----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~ 69 (455)
T 3v47_A 3 PGTS----ECSVI-GYNAICINR--GLHQVPE-LP-----AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69 (455)
T ss_dssp --------CCEEE-TTEEECCSS--CCSSCCC-CC-----TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE
T ss_pred Cccc----eeEEE-ccccCcCCC--CcccCCC-CC-----CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce
Confidence 3565 67775 446778654 3555554 21 4899999999999887 677889999999999999987 6
Q ss_pred CCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc--ccccCCCCccEEEecCCCCCCCCcc
Q psy8879 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQD 210 (694)
Q Consensus 133 i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~--~~f~~L~~L~~L~Ls~N~l~~i~~~ 210 (694)
+++..|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++|.+++..+ ..|.++++|++|++++|+++++.+.
T Consensus 70 i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 70 IRNNTFRGLS-SLIILKLDYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp ECTTTTTTCT-TCCEEECTTCTTCEECTTTTTTC-TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred ECcccccccc-cCCEEeCCCCccCccChhhccCc-ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 7777787765 49999999999999988889999 999999999999987433 3488999999999999999998776
Q ss_pred c-cCCCCCCcEEeccCCcccchhhhhhccC----------------------------------cccccccCCCCcCCCC
Q psy8879 211 C-LAPLVTLRVLRLQGNRLTVSVVAALQGL----------------------------------RSVTDLDLSHNLLAGP 255 (694)
Q Consensus 211 ~-f~~L~~L~~L~Ls~N~l~~~~~~~~~~L----------------------------------~~L~~L~Ls~N~l~~~ 255 (694)
. |..+++|++|++++|++++..+..+..+ ++|++|++++|.+.+.
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 5 8889999999999999987776665543 5677777777766421
Q ss_pred C------------------------------------CCCCCCC--ccccceeeccCCcccccccccccCCcccceeccc
Q psy8879 256 L------------------------------------GPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297 (694)
Q Consensus 256 i------------------------------------~p~~~~~--l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls 297 (694)
. .+..+.. .++|+.|++++|.++++.+..+.++++|++|+++
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 1 0011111 2578888888888888877788888888888888
Q ss_pred CCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879 298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377 (694)
Q Consensus 298 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~ 377 (694)
+|+++.+++..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|+++++++..+..+++|++|++++|+++.+|
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 88888888878888888888888888888888888888888888888888888887777888888888888888888888
Q ss_pred ccccc----------CCCC--CCcc-cccccccccccccCCccCccccCCcc
Q psy8879 378 ECIYV----------GFNT--MDLE-LIYSGVWRHSTLLIPVMLSLCTRSSV 416 (694)
Q Consensus 378 ~~~f~----------~~Np--CdC~-l~~~~~wl~~~~~~~~~~~~C~~~~~ 416 (694)
+..|. .+|| |+|. +.|+..|++...........|..+..
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~~~ 439 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 439 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTTCC
T ss_pred HhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeeecCCCc
Confidence 76654 6777 9997 78899999765555555677876443
No 5
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-36 Score=346.58 Aligned_cols=348 Identities=27% Similarity=0.309 Sum_probs=275.4
Q ss_pred CCCCCCC-CcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcC
Q psy8879 63 LCACDLP-HTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIG 140 (694)
Q Consensus 63 ~C~C~~~-~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~ 140 (694)
.|.|..+ ..+.|.. ..++.+|..++ ..++.||+++|+|+.+|+ .|..+++|++|+|++|.|+.+++++|.+
T Consensus 26 ~c~~~~~~~~~~c~~--~~l~~vP~~lp-----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 26 PCVEVVPNITYQCME--LNFYKIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp CSEEEETTTEEECTT--SCCSSCCSSSC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CccccCCCCEEECCC--CCcCccCCCCC-----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 4555433 3567754 34777887663 379999999999999975 6889999999999999999999999988
Q ss_pred CCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCC-ccccCCCCCCc
Q psy8879 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLR 219 (694)
Q Consensus 141 l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~ 219 (694)
+.. |++|+|++|+|+.+++..|.++ ++|++|+|++|+++++++..|+++++|++|++++|.++.+. +..+..+++|+
T Consensus 99 L~~-L~~L~Ls~N~l~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 99 LSH-LSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp CTT-CCEEECTTCCCCEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCC-CCEEEccCCcCCCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 765 9999999999999999999999 99999999999999999989999999999999999998764 56788899999
Q ss_pred EEeccCCcccchhhhhhcc-------------------------------------------------------------
Q psy8879 220 VLRLQGNRLTVSVVAALQG------------------------------------------------------------- 238 (694)
Q Consensus 220 ~L~Ls~N~l~~~~~~~~~~------------------------------------------------------------- 238 (694)
+|++++|++++..+..+..
T Consensus 177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred hhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence 9999999876433322211
Q ss_pred --------------------------------------------------------------------------------
Q psy8879 239 -------------------------------------------------------------------------------- 238 (694)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (694)
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 336 (635)
T ss_dssp EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcc
Confidence
Q ss_pred ---------------------------------CcccccccCCCCcCCC-------------------------------
Q psy8879 239 ---------------------------------LRSVTDLDLSHNLLAG------------------------------- 254 (694)
Q Consensus 239 ---------------------------------L~~L~~L~Ls~N~l~~------------------------------- 254 (694)
+++|+.|++++|.+..
T Consensus 337 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 416 (635)
T 4g8a_A 337 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF 416 (635)
T ss_dssp SCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC
T ss_pred cccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc
Confidence 1122222222222210
Q ss_pred ------------------CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcc-ccccchhhhccccc
Q psy8879 255 ------------------PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTL 315 (694)
Q Consensus 255 ------------------~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L-~~i~~~~f~~l~~L 315 (694)
..+...+..+++++.++++.|.+..+.+..+.++++|+.|++++|.+ ..+.+..|..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 00112233444556666666667777777778888899999998874 45667788999999
Q ss_pred ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-----------CC
Q psy8879 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-----------GF 384 (694)
Q Consensus 316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-----------~~ 384 (694)
+.|+|++|+|+++++..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++++++.|. ++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999998876553 78
Q ss_pred CC--CCccccccccccccc--ccCCccCccccCCcccce
Q psy8879 385 NT--MDLELIYSGVWRHST--LLIPVMLSLCTRSSVVTR 419 (694)
Q Consensus 385 Np--CdC~l~~~~~wl~~~--~~~~~~~~~C~~~~~~~~ 419 (694)
|| |||++.||..|++.. .+.+..+++|++|...++
T Consensus 577 Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g 615 (635)
T 4g8a_A 577 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 615 (635)
T ss_dssp CCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred CCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence 88 999999999999643 344566899998876544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.7e-35 Score=334.97 Aligned_cols=161 Identities=23% Similarity=0.223 Sum_probs=126.9
Q ss_pred CCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc-ccchhhhcccccccccCCCCccccccccchhccc
Q psy8879 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337 (694)
Q Consensus 259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~-i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~ 337 (694)
..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++. +.+..|..+++|+.|++++|+++++.+..|.+++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 445566666777777777766666677778888888888888876 4566788899999999999999999899999999
Q ss_pred ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC--CCccccccccccccc--cc
Q psy8879 338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT--MDLELIYSGVWRHST--LL 403 (694)
Q Consensus 338 ~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np--CdC~l~~~~~wl~~~--~~ 403 (694)
+|+.|+|++|+++++++..+..+++|+.|++++|+++.+|..+.. .+|| |+|++.||..|++.. .+
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~ 577 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSB
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccc
Confidence 999999999999999888899999999999999999999875321 7888 999999999999743 24
Q ss_pred CCccCccccCCcccce
Q psy8879 404 IPVMLSLCTRSSVVTR 419 (694)
Q Consensus 404 ~~~~~~~C~~~~~~~~ 419 (694)
....++.|..+....+
T Consensus 578 ~~~~~~~C~~p~~~~~ 593 (606)
T 3vq2_A 578 VNVEQMTCATPVEMNT 593 (606)
T ss_dssp SSGGGCCCC-------
T ss_pred cCCccceeCCChHhCC
Confidence 4556789987765444
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-34 Score=331.36 Aligned_cols=320 Identities=23% Similarity=0.276 Sum_probs=279.3
Q ss_pred CeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 96 RVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
.++.+++++|.++.++.. +..+++|++|++++|.++.++.. |.++ ++|++|++++|.++.+++..+..+ ++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGL-STLKKLVLSANKFENLCQISASNF-PSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSC-TTCCEEECTTCCCSBGGGGCGGGC-TTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hccc-ccCCEEECccCCcCcCchhhhhcc-CcCCEEE
Confidence 789999999999888765 77889999999999999988764 5444 469999999999999988889998 9999999
Q ss_pred ccCCCCC-CCCcccccCCCCccEEEecCCCCCCCC--ccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCc
Q psy8879 175 LSHNQLY-KLENTSFKGLSSLNFLDLSYNKLMTLS--QDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251 (694)
Q Consensus 175 Ls~N~L~-~i~~~~f~~L~~L~~L~Ls~N~l~~i~--~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~ 251 (694)
+++|.+. .+++..|.++++|++|++++|.+.++. +..+..+++|++|++++|++.+..+..|..+++|++|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 9999887 566667899999999999999999886 6678999999999999999998888999999999999999999
Q ss_pred CCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc---cchhhhcccccccccCCCCccccc
Q psy8879 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL---EDHSFRALSTLSHLDLAHNRIVAV 328 (694)
Q Consensus 252 l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i---~~~~f~~l~~L~~L~Ls~N~L~~i 328 (694)
+.+..++..+..+++|+.|++++|.+++..+..+.++++|++|++++|+++.. ....+..+++|+.|++++|+++++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 98765556688999999999999999998888899999999999999999763 235688999999999999999999
Q ss_pred cccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC--CCcccccccc
Q psy8879 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT--MDLELIYSGV 396 (694)
Q Consensus 329 ~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np--CdC~l~~~~~ 396 (694)
.+..|.++++|+.|+|++|+++++++..+..+++| .|++++|+++++++..|. .+|| |+|...||..
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 570 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE 570 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHH
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHH
Confidence 99999999999999999999999999999999999 999999999999887554 7899 9999999999
Q ss_pred ccccc--ccCCccCccccCCcccce
Q psy8879 397 WRHST--LLIPVMLSLCTRSSVVTR 419 (694)
Q Consensus 397 wl~~~--~~~~~~~~~C~~~~~~~~ 419 (694)
|++.. .+.....+.|..|...++
T Consensus 571 w~~~~~~~~~~~~~~~C~~p~~~~g 595 (606)
T 3t6q_A 571 WYKENMQKLEDTEDTLCENPPLLRG 595 (606)
T ss_dssp HHHHCGGGEECGGGCBEEESGGGTT
T ss_pred HHHhCcccccCCCCCeeCCchHhCC
Confidence 99743 233456788987754433
No 8
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-34 Score=331.36 Aligned_cols=334 Identities=20% Similarity=0.252 Sum_probs=242.3
Q ss_pred CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCCCCCcchhcCCC
Q psy8879 64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLS 142 (694)
Q Consensus 64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~ 142 (694)
|.|.....+.|.++ .++.+|..+. ..++.|++++|.++.++ ..|..+++|++|++++|.++.+.+++|.++.
T Consensus 28 ~~~~~~~~l~ls~~--~L~~ip~~~~-----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 28 FSNELESMVDYSNR--NLTHVPKDLP-----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp -----CCEEECTTS--CCCSCCTTSC-----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred cccCCCcEEEcCCC--CCccCCCCCC-----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 34544456777654 3555665543 48999999999998886 5788889999999999999999888887765
Q ss_pred CCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCC------
Q psy8879 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------ 215 (694)
Q Consensus 143 ~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L------ 215 (694)
. |++|+|++|.++.+|.. .+ ++|++|+|++|+++.++ +..|+++++|++|++++|+++......+..+
T Consensus 101 ~-L~~L~Ls~N~l~~lp~~---~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 101 D-LEYLDVSHNRLQNISCC---PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175 (562)
T ss_dssp T-CCEEECTTSCCCEECSC---CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEE
T ss_pred C-CCEEECCCCcCCccCcc---cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEE
Confidence 4 99999999999988875 56 88999999999998876 4678888889888888888765322222222
Q ss_pred -------------------C------------------------------------------------------------
Q psy8879 216 -------------------V------------------------------------------------------------ 216 (694)
Q Consensus 216 -------------------~------------------------------------------------------------ 216 (694)
.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 1
Q ss_pred ---------------------CCcEEeccCCcccchhhhhh---------------------------------------
Q psy8879 217 ---------------------TLRVLRLQGNRLTVSVVAAL--------------------------------------- 236 (694)
Q Consensus 217 ---------------------~L~~L~Ls~N~l~~~~~~~~--------------------------------------- 236 (694)
+|++|++++|++++.+|..+
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 34444444444443333322
Q ss_pred --------------ccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccc--cccccCCcccceecccCCc
Q psy8879 237 --------------QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR--RGALAGLDKLTSLSCHHNQ 300 (694)
Q Consensus 237 --------------~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~--~~~~~~L~~L~~L~Ls~N~ 300 (694)
..+++|++|++++|.+.+.+ +..+..+++|++|++++|++++++ +..+.++++|++|++++|.
T Consensus 336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EEccCCCcccccCccCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 45567777777777777643 666777778888888888777654 2456777788888888888
Q ss_pred ccc-ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879 301 IDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379 (694)
Q Consensus 301 L~~-i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~ 379 (694)
++. ++...|..+++|+.|++++|++++..+..+. ++|+.|+|++|+++.+++..+ .+++|+.|++++|+++.+|..
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHH
Confidence 876 6666677778888888888887765544333 689999999999999988766 899999999999999999987
Q ss_pred ccc----------CCCC--CCcccccccc-ccccccc--------CCccCccccC
Q psy8879 380 IYV----------GFNT--MDLELIYSGV-WRHSTLL--------IPVMLSLCTR 413 (694)
Q Consensus 380 ~f~----------~~Np--CdC~l~~~~~-wl~~~~~--------~~~~~~~C~~ 413 (694)
.|. ++|| |+|++.||.. |.+.... .....+.|+.
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred HHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 443 7888 9999999955 8753221 1234677865
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.3e-34 Score=320.59 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=137.2
Q ss_pred ccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccc--ccccCCcccceecccCCcccc-ccchhhhccc
Q psy8879 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDV-LEDHSFRALS 313 (694)
Q Consensus 237 ~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~--~~~~~L~~L~~L~Ls~N~L~~-i~~~~f~~l~ 313 (694)
..+++|++|++++|.+.+.+ +..+..+++|++|++++|++++++. ..+.++++|++|++++|.++. ++...|..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTV-FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTT-TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhh-hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 45667777777887777643 6667778888888888888876432 457777888888888888877 6666677778
Q ss_pred ccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------C
Q psy8879 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------G 383 (694)
Q Consensus 314 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~ 383 (694)
+|+.|++++|++++..+..+. ++|+.|+|++|+++.++...+ .+++|+.|++++|+++.+|...|. .
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 888888888888766555443 689999999999998887755 799999999999999999987443 7
Q ss_pred CCC--CCcccccc-cccccccccCCccCccccCCcc
Q psy8879 384 FNT--MDLELIYS-GVWRHSTLLIPVMLSLCTRSSV 416 (694)
Q Consensus 384 ~Np--CdC~l~~~-~~wl~~~~~~~~~~~~C~~~~~ 416 (694)
+|| |+|.+.|| ..|++........++.|+.+..
T Consensus 477 ~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~ 512 (520)
T 2z7x_B 477 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 512 (520)
T ss_dssp SSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTCC
T ss_pred CCCCcccCCchHHHHHHHHhccccCCCCCCcCCccc
Confidence 888 99999999 9999765555667889988743
No 10
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=309.23 Aligned_cols=299 Identities=22% Similarity=0.293 Sum_probs=238.8
Q ss_pred EcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCC
Q psy8879 101 DCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL 180 (694)
Q Consensus 101 dls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L 180 (694)
++++++++.+|..+. ++|++|++++|.++.++...|.++. +|++|++++|.++++++..|.++ ++|++|+|++|++
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l 112 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSL-GSLEHLDLSYNYL 112 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred eCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCC-CCCCEEECCCCcC
Confidence 445666777776654 3788888888888888777776654 48888888888888887778888 8888888888888
Q ss_pred CCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCC-cccchhhhhhccCcccccccCCCCcCCCCCCC
Q psy8879 181 YKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGN-RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP 258 (694)
Q Consensus 181 ~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N-~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p 258 (694)
+.+++..|.++++|++|++++|+++.++. ..|..+++|++|++++| .+....+..|.++++|++|++++|.+.+. .+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CH
Confidence 88887778888888888888888888876 67888888888888888 46666677888888888888888888763 47
Q ss_pred CCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhh---cccccccccCCCCccccc----ccc
Q psy8879 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR---ALSTLSHLDLAHNRIVAV----SGA 331 (694)
Q Consensus 259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~---~l~~L~~L~Ls~N~L~~i----~~~ 331 (694)
..+..+++|++|++++|.++.++...+..+++|++|++++|.++.++...+. ..+.++.++++++.+++. .+.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 7888889999999999998888776667788999999999998877654433 245667777777776652 256
Q ss_pred chhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccccccCCccCcc
Q psy8879 332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHSTLLIPVMLSL 410 (694)
Q Consensus 332 ~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~~~~~~~~~~~ 410 (694)
.+..+++|+.|+|++|++++++...|..+++|+.|++++|++. |+|. +.|+..|++.........+.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~------------~~~~~l~~l~~~~~~~~~~~~~~~~ 339 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD------------CSCPRIDYLSRWLNKNSQKEQGSAK 339 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC------------CCHHHHHHHHHHHHHTTTTEESCCB
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc------------CcCCCcHHHHHHHHhccccCCCCcc
Confidence 6889999999999999999999988899999999999999999 9996 88999999754433345789
Q ss_pred ccCCcc
Q psy8879 411 CTRSSV 416 (694)
Q Consensus 411 C~~~~~ 416 (694)
|..+..
T Consensus 340 C~~p~~ 345 (353)
T 2z80_A 340 CSGSGK 345 (353)
T ss_dssp BTTTCC
T ss_pred cCCCCC
Confidence 987644
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-33 Score=323.80 Aligned_cols=306 Identities=25% Similarity=0.327 Sum_probs=206.4
Q ss_pred cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCC--CCCCccccccC-CCCccEEEccCCCCCCCCccccc
Q psy8879 113 KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL--SVVPTSALAPL-APNLDRLDLSHNQLYKLENTSFK 189 (694)
Q Consensus 113 ~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L--~~lp~~~~~~l-~~~L~~L~Ls~N~L~~i~~~~f~ 189 (694)
.+..+++|++|++++|.+..+.+..|.++.. |++|++++|.+ ..++...|..+ .++|++|++++|+++++.+..|.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 3444555566666666665555555554433 66666665542 23333333322 03566666666667776666777
Q ss_pred CCCCccEEEecCCCCCC-CCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC-CCCCCCCCcccc
Q psy8879 190 GLSSLNFLDLSYNKLMT-LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP-LGPSTVPRLSSL 267 (694)
Q Consensus 190 ~L~~L~~L~Ls~N~l~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~-i~p~~~~~l~~L 267 (694)
++++|++|++++|.+.+ +++..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+.+. ..|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 77777777777777764 4446677777777777777777777777777777778888877776521 226677788888
Q ss_pred ceeeccCCcccccccccccCCcccceecccCCccccccch--------hhhcccccccccCCCCccccccccchhccccc
Q psy8879 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH--------SFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339 (694)
Q Consensus 268 ~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~--------~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L 339 (694)
+.|++++|+++++++..|.++++|++|++++|+++.++.. .|.++++|+.|+|++|+++.+++..|.++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 8888888888888877788888888888888888766432 36777888888888888888877778888888
Q ss_pred CeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-----------CCCC--CCccc-ccccccccccc--c
Q psy8879 340 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-----------GFNT--MDLEL-IYSGVWRHSTL--L 403 (694)
Q Consensus 340 ~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-----------~~Np--CdC~l-~~~~~wl~~~~--~ 403 (694)
+.|+|++|+++++++..|..+++|+.|++++|+++++++..|. .+|| |||+. .||..|++... +
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~ 642 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCccc
Confidence 8888888888888888888888888888888888888876442 6777 99996 99999997432 2
Q ss_pred CC-ccCccccCCcccce
Q psy8879 404 IP-VMLSLCTRSSVVTR 419 (694)
Q Consensus 404 ~~-~~~~~C~~~~~~~~ 419 (694)
.. ...+.|+.|...++
T Consensus 643 ~~~~~~~~C~~p~~~~g 659 (680)
T 1ziw_A 643 PELSSHYLCNTPPHYHG 659 (680)
T ss_dssp -----------------
T ss_pred ccccCCcEECCchHHCC
Confidence 22 24689988765444
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=307.46 Aligned_cols=282 Identities=26% Similarity=0.337 Sum_probs=262.3
Q ss_pred CCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879 94 DERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172 (694)
Q Consensus 94 ~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~ 172 (694)
...|+.|++++|.++.+ |..|..+++|++|++++|.++.++...|.++. +|++|+|++|.++.+++..|.++ ++|++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~ 132 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDL-YNLKS 132 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTC-TTCCE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCEEECCCCccccCChhHcccc-ccCCE
Confidence 45899999999999887 67888999999999999999999988887765 59999999999999988889999 99999
Q ss_pred EEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252 (694)
Q Consensus 173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l 252 (694)
|+|++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|..
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999988
Q ss_pred CCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccc
Q psy8879 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332 (694)
Q Consensus 253 ~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~ 332 (694)
.+.+++. .....+|+.|++++|.+++++...|.++++|++|+|++|.++.+++..|.++++|+.|+|++|+++++.+..
T Consensus 213 ~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 213 LDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp CCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ccccCcc-cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 7766444 444569999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 333 f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
|.++++|+.|+|++|+++++++..|..+++|+.|++++|+|.....
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999999999999999999999999999999999999999986543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-33 Score=317.49 Aligned_cols=332 Identities=23% Similarity=0.335 Sum_probs=212.3
Q ss_pred EccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccC
Q psy8879 74 CTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPN 152 (694)
Q Consensus 74 C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~ 152 (694)
|+.....+..+|..+. ..++.|++++|+++.+ |..+..+++|++|++++|.++.+.+.+|.++. +|++|++++
T Consensus 10 c~~~~~~l~~ip~~~~-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~ 83 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSD 83 (549)
T ss_dssp EECTTSCCSSCCSCCC-----TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTT
T ss_pred EECCCCccccccccCC-----CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCC
Confidence 4434445666666543 3788888888888776 45677788888888888888888777777655 488888888
Q ss_pred CCCCCCCccccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCC-CCCCCccccCCCCCCcEEeccCCcccc
Q psy8879 153 NLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTV 230 (694)
Q Consensus 153 N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~ 230 (694)
|.++++++..|.++ ++|++|++++|.++.+. +..|+++++|++|++++|. +..+++..|..+++|++|++++|++++
T Consensus 84 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 84 NHLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp SCCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 88888888777887 88888888888887642 3467777777777777776 555555566677777777777776665
Q ss_pred hhhhhhcc------------------------CcccccccCCCCcCCCCC----C-------------------------
Q psy8879 231 SVVAALQG------------------------LRSVTDLDLSHNLLAGPL----G------------------------- 257 (694)
Q Consensus 231 ~~~~~~~~------------------------L~~L~~L~Ls~N~l~~~i----~------------------------- 257 (694)
..|..+.. +++|++|++++|.+.+.. .
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 44444332 345555555555554310 0
Q ss_pred --------------------------------------------------------------------------------
Q psy8879 258 -------------------------------------------------------------------------------- 257 (694)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (694)
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence
Q ss_pred ---CCC-CCCccccceeeccCCccccccc---ccccCCcccceecccCCccccccc--hhhhcccccccccCCCCccccc
Q psy8879 258 ---PST-VPRLSSLKVLSIAHNQFSSVRR---GALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHLDLAHNRIVAV 328 (694)
Q Consensus 258 ---p~~-~~~l~~L~~L~Ls~N~L~~i~~---~~~~~L~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L~Ls~N~L~~i 328 (694)
|.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|+++.++. ..+..+++|+.|++++|+++++
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence 000 0124555666666666554321 124445555555555555554432 3344555555555555555443
Q ss_pred cccchh-----------------------------------------cccccCeeecCCCCCCCcChhhhCCCCCCCEEE
Q psy8879 329 SGASLA-----------------------------------------HLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367 (694)
Q Consensus 329 ~~~~f~-----------------------------------------~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~ 367 (694)
+. .+. .+++|+.|+|++|+++.++. ...+++|+.|+
T Consensus 403 p~-~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~ 479 (549)
T 2z81_A 403 PD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMK 479 (549)
T ss_dssp CS-CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEE
T ss_pred Ch-hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEe
Confidence 21 111 45666677777777776665 23577888888
Q ss_pred ccCCCCCCCCccccc----------CCCC--CCcc-cccccccccccccCCccCccccCCc
Q psy8879 368 LDDNDISMEPECIYV----------GFNT--MDLE-LIYSGVWRHSTLLIPVMLSLCTRSS 415 (694)
Q Consensus 368 Ls~N~L~~l~~~~f~----------~~Np--CdC~-l~~~~~wl~~~~~~~~~~~~C~~~~ 415 (694)
|++|+++++++..|. ++|| |+|. +.|+..|++.........+.|..+.
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~~ 540 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 540 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTTC
T ss_pred cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCCC
Confidence 888888888776554 7888 9998 5788889975555566678897653
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=312.18 Aligned_cols=153 Identities=25% Similarity=0.301 Sum_probs=109.9
Q ss_pred ccccceeeccCCccccccc-ccccCCcccceecccCCccccccchhhhcccccccccCCCCccc-cccccchhcccccCe
Q psy8879 264 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-AVSGASLAHLSNLTT 341 (694)
Q Consensus 264 l~~L~~L~Ls~N~L~~i~~-~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~-~i~~~~f~~l~~L~~ 341 (694)
+++|+.|++++|.+.+..+ ..+.++++|++|++++|.++...+..|.++++|+.|++++|+++ +..|..+..+++|+.
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 3344444444444444332 34556666777777777776666667777888888888888887 455677888899999
Q ss_pred eecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC--CCccccccc-ccccccccCCccC
Q psy8879 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT--MDLELIYSG-VWRHSTLLIPVML 408 (694)
Q Consensus 342 L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np--CdC~l~~~~-~wl~~~~~~~~~~ 408 (694)
|+|++|+++++++..+..+++|+.|++++|+++++++..|. .+|| |+|...|+. .|++.........
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~ 554 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 554 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESC
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCc
Confidence 99999999998888888999999999999999999887654 6788 999988887 9987432221122
Q ss_pred ccccCCcc
Q psy8879 409 SLCTRSSV 416 (694)
Q Consensus 409 ~~C~~~~~ 416 (694)
..|+.+..
T Consensus 555 ~~C~~~~~ 562 (570)
T 2z63_A 555 AKCSGSGK 562 (570)
T ss_dssp CBBTTTCC
T ss_pred hhhCCCCC
Confidence 28977633
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=2.2e-32 Score=288.33 Aligned_cols=281 Identities=27% Similarity=0.343 Sum_probs=184.0
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++++++.+|..+. ++|++|++++|.++.++...|.++. +|++|++++|.++.+..
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~------------------ 69 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGC------------------ 69 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEE------------------
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccC------------------
Confidence 35666677777776543 3455555555555555544444433 25555555555443310
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh-hhhccCcccccccCCCCcCCCCCC
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLG 257 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~~i~ 257 (694)
.+..+.++++|++|++++|.+..++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+. .
T Consensus 70 -----~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~ 142 (306)
T 2z66_A 70 -----CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-F 142 (306)
T ss_dssp -----EEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-S
T ss_pred -----cccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-c
Confidence 022333344444444444444443322 4444555555555555443332 3455555555555555555442 2
Q ss_pred CCCCCCccccceeeccCCcccc-cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879 258 PSTVPRLSSLKVLSIAHNQFSS-VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336 (694)
Q Consensus 258 p~~~~~l~~L~~L~Ls~N~L~~-i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l 336 (694)
+..+..+++|++|++++|.+++ ..+..+.++++|++|++++|+++.+++..|..+++|+.|+|++|+++++++..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 5556666777777777777765 455667777888888888888888777778888888888888888888888788889
Q ss_pred cccCeeecCCCCCCCcChhhhCCCC-CCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccc--cCCccCccccC
Q psy8879 337 SNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL--LIPVMLSLCTR 413 (694)
Q Consensus 337 ~~L~~L~Ls~N~L~~l~~~~~~~l~-~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~--~~~~~~~~C~~ 413 (694)
++|+.|+|++|++++..+..+..++ +|+.|++++|+|+ |+|+..||..|++... ......+.|..
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~------------~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------------CTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE------------CSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee------------cccChHHHHHHHHhhhhhhccccccccCC
Confidence 9999999999999998888888884 9999999999999 9999999999997432 34556788987
Q ss_pred Ccccce
Q psy8879 414 SSVVTR 419 (694)
Q Consensus 414 ~~~~~~ 419 (694)
|...++
T Consensus 291 p~~~~g 296 (306)
T 2z66_A 291 PSDKQG 296 (306)
T ss_dssp SGGGTT
T ss_pred chhhCC
Confidence 665443
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.7e-32 Score=294.13 Aligned_cols=307 Identities=23% Similarity=0.285 Sum_probs=229.1
Q ss_pred CCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L 173 (694)
..++.++++++.++.+|.. +..+++|++|++++|.+..++...|.++. +|++|++++|.++.+++..|.++ ++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV-PLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCC-CCCCEE
Confidence 4788888988888888876 45678899999998888888887777665 49999999999988888888888 889999
Q ss_pred EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccC--------------
Q psy8879 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL-------------- 239 (694)
Q Consensus 174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L-------------- 239 (694)
+|++|.++.+++..|.++++|++|++++|.++++.+..|..+++|++|++++|++++.....+.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 999998888888778888899999999998888888888888889999999888876533322221
Q ss_pred --cccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879 240 --RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317 (694)
Q Consensus 240 --~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 317 (694)
++|++|++++|.+.+ + +. ...++|+.|++++|.+++. ..+.++++|++|++++|.++.+.+..|..+++|+.
T Consensus 203 ~~~~L~~L~l~~n~l~~-~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 203 IPIAVEELDASHNSINV-V-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CCSSCSEEECCSSCCCE-E-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCCcceEEECCCCeeee-c-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 234444444444442 1 11 1235778888888888776 35777788888888888888877777888888888
Q ss_pred ccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-------CCCC--CC
Q psy8879 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-------GFNT--MD 388 (694)
Q Consensus 318 L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-------~~Np--Cd 388 (694)
|+|++|++++++ ..+..+++|+.|+|++|+++++++. +..+++|+.|++++|+++.++...+. .+|| |+
T Consensus 277 L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 277 LYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCcCcccC-cccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 888888888774 3446678888888888888877654 45677888888888888877654433 6777 88
Q ss_pred cccccccccccccccCCccCccccC
Q psy8879 389 LELIYSGVWRHSTLLIPVMLSLCTR 413 (694)
Q Consensus 389 C~l~~~~~wl~~~~~~~~~~~~C~~ 413 (694)
|...++..|.+... ......|..
T Consensus 355 ~~~~~~~~~~~~~~--~~~~~~c~~ 377 (390)
T 3o6n_A 355 SLRALFRNVARPAV--DDADQHCKI 377 (390)
T ss_dssp HHHHHTTTCCTTTB--CCCCSCCCT
T ss_pred hHHHHHHHHHhhcc--cccCceecc
Confidence 88888887776432 223445654
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=4.8e-32 Score=324.94 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=71.1
Q ss_pred hhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc------
Q psy8879 309 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV------ 382 (694)
Q Consensus 309 f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~------ 382 (694)
|.++++|+.|+|++|+++++++..|.++++|+.|+|++|+++++++..+. ++|+.|+|++|+++++++..|.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~ 553 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLD 553 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEE
Confidence 44555666666666666666666666666666666666666666665544 5666777777777666666554
Q ss_pred -CCCC--CCcccccccccccccc---cCCccCccccCCcc
Q psy8879 383 -GFNT--MDLELIYSGVWRHSTL---LIPVMLSLCTRSSV 416 (694)
Q Consensus 383 -~~Np--CdC~l~~~~~wl~~~~---~~~~~~~~C~~~~~ 416 (694)
++|| |+|++.||..|+.... ..+...+.|.+|..
T Consensus 554 l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~ 593 (844)
T 3j0a_A 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS 593 (844)
T ss_dssp EEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSS
T ss_pred ecCCCcccccccHHHHHHHHhcCcccccccccCccCCchh
Confidence 6788 9999999999986322 23445788987654
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.3e-31 Score=295.44 Aligned_cols=279 Identities=23% Similarity=0.322 Sum_probs=244.1
Q ss_pred eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCC-CCCccccccCCCCccEEEcc
Q psy8879 98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~-~lp~~~~~~l~~~L~~L~Ls 176 (694)
+.++|++++++.+|. +. ++|++|++++|.++.+.+..|.++. +|++|++++|.+. .+++..|.++ ++|++|+|+
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTC-TTCCEEECT
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceECccccccc-ccCCEEeCC
Confidence 358999999999998 33 6899999999999999888888765 4999999999987 6778889999 999999999
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCCc--cccCCCCCCcEEeccCCcccchhhhh-hccCcccccccCCCCcCC
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ--DCLAPLVTLRVLRLQGNRLTVSVVAA-LQGLRSVTDLDLSHNLLA 253 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~--~~f~~L~~L~~L~Ls~N~l~~~~~~~-~~~L~~L~~L~Ls~N~l~ 253 (694)
+|.++.+.+..|.++++|++|++++|++++..+ ..|..+++|++|++++|++++..|.. +.++++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999999988999999999999999999998444 44899999999999999999887776 899999999999999998
Q ss_pred CCCCCCCCCCc----------------------------------cccceeeccCCcccccccccccC------------
Q psy8879 254 GPLGPSTVPRL----------------------------------SSLKVLSIAHNQFSSVRRGALAG------------ 287 (694)
Q Consensus 254 ~~i~p~~~~~l----------------------------------~~L~~L~Ls~N~L~~i~~~~~~~------------ 287 (694)
+.. +..+..+ ++|++|++++|.+++..+..+..
T Consensus 168 ~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccC-hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 743 5545433 67888999988876544332211
Q ss_pred ---------------------------CcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccC
Q psy8879 288 ---------------------------LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340 (694)
Q Consensus 288 ---------------------------L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~ 340 (694)
.++|++|++++|.++.+.+..|..+++|+.|+|++|+++++.+..|.++++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 25799999999999999898999999999999999999999999999999999
Q ss_pred eeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382 (694)
Q Consensus 341 ~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 382 (694)
.|+|++|+++++++..+..+++|+.|+|++|+++.+++..|.
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence 999999999999999999999999999999999988776654
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-30 Score=278.00 Aligned_cols=267 Identities=25% Similarity=0.384 Sum_probs=221.2
Q ss_pred eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879 97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls 176 (694)
++.++|++++++.+|..+. +.++.|++++|.++.++...|.++. +|++|++++|.++.+.+..|.++ ++|++|+|+
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPL-VKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCC-CCCCEEECC
Confidence 4567888888888887664 5788899999999888887777665 49999999999988877788888 899999999
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc--hhhhhhccCcccccccCCCCcCCC
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
+|.++.++...+ ++|++|++++|.++++.+..|..+++|++|++++|.+.. ..+..+.++++|++|++++|.+.+
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 998888775443 688999999999998888888889999999999998863 567788888999999999998875
Q ss_pred CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334 (694)
Q Consensus 255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~ 334 (694)
+ |..+. ++|++|++++|.++++.+..|.++++|++|++++|.++.+++..|..+++|+.|+|++|+++.+ |..+.
T Consensus 186 -l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~ 260 (330)
T 1xku_A 186 -I-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA 260 (330)
T ss_dssp -C-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred -C-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Chhhc
Confidence 4 33333 7889999999999988888888899999999999999888888888899999999999999877 44578
Q ss_pred cccccCeeecCCCCCCCcChhhhCC------CCCCCEEEccCCCCCC
Q psy8879 335 HLSNLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISM 375 (694)
Q Consensus 335 ~l~~L~~L~Ls~N~L~~l~~~~~~~------l~~L~~L~Ls~N~L~~ 375 (694)
.+++|+.|+|++|+++++++..|.. ...++.|++++|++..
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 8899999999999999888877754 3678899999998863
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-30 Score=278.96 Aligned_cols=265 Identities=26% Similarity=0.396 Sum_probs=183.0
Q ss_pred eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879 97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls 176 (694)
++.++|++++++.+|..+. ++|+.|++++|.++.+.+..|.++. +|++|++++|.++.+++..|.++ ++|++|+|+
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPL-RKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTC-TTCCEEECC
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCc-CCCCEEECC
Confidence 3456667777777776553 4677777777777777666666554 37777777777777766667777 777777777
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc--hhhhhhccCcccccccCCCCcCCC
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
+|.++.++...+ ++|++|++++|+++.+++..|..+++|++|++++|.++. ..+..+..+ +|++|++++|.+.+
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 777776665433 567777777777777777667777777777777777752 455666666 77777777777765
Q ss_pred CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334 (694)
Q Consensus 255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~ 334 (694)
+ |..+. ++|++|++++|.++++++..|.++++|++|++++|+++.+++..|..+++|+.|++++|+++.++ ..+.
T Consensus 187 -l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~ 261 (332)
T 2ft3_A 187 -I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLP 261 (332)
T ss_dssp -C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTGG
T ss_pred -c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhhh
Confidence 3 33332 56777777777777776666777777777777777777777667777777777777777777653 3466
Q ss_pred cccccCeeecCCCCCCCcChhhhCCC------CCCCEEEccCCCCC
Q psy8879 335 HLSNLTTLDLSHNFLRALTQDLITPL------KSLQELRLDDNDIS 374 (694)
Q Consensus 335 ~l~~L~~L~Ls~N~L~~l~~~~~~~l------~~L~~L~Ls~N~L~ 374 (694)
.+++|+.|++++|+++++++..|... .+|+.|++++|++.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 77777777777777777776655442 55677777777776
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.9e-31 Score=302.44 Aligned_cols=304 Identities=21% Similarity=0.295 Sum_probs=261.7
Q ss_pred CCCCC-CCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCCCCCcchhcC
Q psy8879 63 LCACD-LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELKNISDGAFIG 140 (694)
Q Consensus 63 ~C~C~-~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~ 140 (694)
.|.|. ....+.|.+. .+..+|..+. ..++.||+++|.++.+ |..|..+++|++|++++|.+..+.+.+|.+
T Consensus 7 ~C~~~~~~~~~~c~~~--~l~~iP~~l~-----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 79 (606)
T 3t6q_A 7 KCIEKEVNKTYNCENL--GLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79 (606)
T ss_dssp CCEEEETTTEEECTTS--CCSSCCTTSC-----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceecccCCceEECCCC--CcccCcCCCC-----CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC
Confidence 67774 3456777553 4666776653 2789999999999988 567889999999999999999999999988
Q ss_pred CCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcE
Q psy8879 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220 (694)
Q Consensus 141 l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~ 220 (694)
+.. |++|+|++|.++.+++..|.++ ++|++|++++|.++.+.+..|.++++|++|++++|++.++....+..+++|++
T Consensus 80 l~~-L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 80 QHR-LDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp CTT-CCEEECTTCCCSEECTTTTSSC-TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred ccc-cCeeeCCCCcccccChhhhccc-ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 764 9999999999999988889999 99999999999999998888999999999999999999987555667999999
Q ss_pred EeccCCcccchhhhhhccCcccc--cccCCCCcCCCCCCCCCCCCc----------------------------------
Q psy8879 221 LRLQGNRLTVSVVAALQGLRSVT--DLDLSHNLLAGPLGPSTVPRL---------------------------------- 264 (694)
Q Consensus 221 L~Ls~N~l~~~~~~~~~~L~~L~--~L~Ls~N~l~~~i~p~~~~~l---------------------------------- 264 (694)
|++++|++++..+..|..+++|+ .|++++|.+.+. .+..+...
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE-CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCcc-ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 99999999988899999999999 899999998763 34443321
Q ss_pred -----------------cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccc
Q psy8879 265 -----------------SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327 (694)
Q Consensus 265 -----------------~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~ 327 (694)
.+|+.|++++|.++++++..|.++++|++|++++|.++.++. .+..+++|++|++++|++++
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSB
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCc
Confidence 167888899999999988889999999999999999998765 57889999999999999999
Q ss_pred ccccchhcccccCeeecCCCCCC-CcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879 328 VSGASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISMEP 377 (694)
Q Consensus 328 i~~~~f~~l~~L~~L~Ls~N~L~-~l~~~~~~~l~~L~~L~Ls~N~L~~l~ 377 (694)
+.+..+..+++|+.|++++|.+. .+++..+..+++|+.|++++|+++.++
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 98888999999999999999887 566677888999999999999998765
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8.9e-31 Score=302.16 Aligned_cols=307 Identities=23% Similarity=0.278 Sum_probs=220.7
Q ss_pred CCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L 173 (694)
..++.++++++.++.+|.. +..+++|+.|++++|.+..+++..|.++. +|++|+|++|.++.+++..|.++ ++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV-PLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCC-CCCCEE
Confidence 4677888888888888765 34577888888888888888777776654 48888888888888888777887 888888
Q ss_pred EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhcc---------------
Q psy8879 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG--------------- 238 (694)
Q Consensus 174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~--------------- 238 (694)
+|++|.++.+++..|+++++|++|+|++|.++++++..|..+++|++|++++|.+++.....+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 88888888888777788888888888888888888877888888888888888887653332221
Q ss_pred -CcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879 239 -LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317 (694)
Q Consensus 239 -L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 317 (694)
.++|+.|++++|.+.. + +..+ .++|+.|+|++|.+++. ..+.++++|++|+|++|.++.+.+..|..+++|+.
T Consensus 209 ~~~~L~~L~ls~n~l~~-~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 209 IPIAVEELDASHNSINV-V-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp CCTTCSEEECCSSCCCE-E-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCchhheeeccCCcccc-c-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 1234444444444432 1 1111 24677788888877764 45777888888888888888887777888888888
Q ss_pred ccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-------CCCC--CC
Q psy8879 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-------GFNT--MD 388 (694)
Q Consensus 318 L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-------~~Np--Cd 388 (694)
|+|++|++++++ ..+..+++|+.|+|++|.++++++. +..+++|+.|+|++|+++.++...+. .+|| |+
T Consensus 283 L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 283 LYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 888888888873 4456678888888888888877654 45677888888888888877654443 6777 88
Q ss_pred cccccccccccccccCCccCccccC
Q psy8879 389 LELIYSGVWRHSTLLIPVMLSLCTR 413 (694)
Q Consensus 389 C~l~~~~~wl~~~~~~~~~~~~C~~ 413 (694)
|...|+..|.... .......|..
T Consensus 361 ~~~~~~~~~~~~~--~~~~~~~C~~ 383 (597)
T 3oja_B 361 SLRALFRNVARPA--VDDADQHCKI 383 (597)
T ss_dssp HHHHHTTTCCTTT--BCCCCCCCCT
T ss_pred hHHHHHHHHhhhc--cccccccCCc
Confidence 8777777766532 2223445653
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.2e-30 Score=300.12 Aligned_cols=308 Identities=26% Similarity=0.348 Sum_probs=256.5
Q ss_pred CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCC
Q psy8879 64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLS 142 (694)
Q Consensus 64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~ 142 (694)
|.|. ...+.|... .+..+|..+. .+++.|++++|.++.++. .|.++++|++|++++|.+..+.+.+|.++.
T Consensus 2 C~~~-~~~~~cs~~--~L~~ip~~~~-----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 73 (680)
T 1ziw_A 2 CTVS-HEVADCSHL--KLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73 (680)
T ss_dssp --CB-SSEEECCSS--CCSSCCSCSC-----TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT
T ss_pred ceeE-CCeeECCCC--CccccccccC-----CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc
Confidence 6665 346777653 4566666553 489999999999998876 588899999999999999999998888876
Q ss_pred CCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEe
Q psy8879 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222 (694)
Q Consensus 143 ~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~ 222 (694)
. |++|+|++|.++.+++..|.++ ++|++|+|++|.++++++..|+++++|++|++++|.+++..+..|..+++|++|+
T Consensus 74 ~-L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 74 M-LKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp T-CCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred C-cCEEECCCCccCccChhhhccC-CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 4 9999999999999999889999 9999999999999999989999999999999999999999999899999999999
Q ss_pred ccCCcccchhhhhhc--cCcccccccCCCCcCCCCCCCCCCCCc---------------------------cccceeecc
Q psy8879 223 LQGNRLTVSVVAALQ--GLRSVTDLDLSHNLLAGPLGPSTVPRL---------------------------SSLKVLSIA 273 (694)
Q Consensus 223 Ls~N~l~~~~~~~~~--~L~~L~~L~Ls~N~l~~~i~p~~~~~l---------------------------~~L~~L~Ls 273 (694)
+++|.+++..+..+. .+++|++|++++|.+.+. .+..+..+ ++|+.|+++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCccccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 999999988777765 458999999999999874 46655544 456777788
Q ss_pred CCcccccccccccCCcc--cceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCC-
Q psy8879 274 HNQFSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR- 350 (694)
Q Consensus 274 ~N~L~~i~~~~~~~L~~--L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~- 350 (694)
+|.++++.+..|.+++. |++|++++|.++.+++..|..+++|+.|++++|++.++.+..|.++++|+.|++++|...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 88888887777877755 889999999888888888888888999999999888888888888888888888876543
Q ss_pred --------CcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879 351 --------ALTQDLITPLKSLQELRLDDNDISMEPECIYV 382 (694)
Q Consensus 351 --------~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 382 (694)
.+....+..+++|+.|++++|+++++++..|.
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence 23334577788888888888888887776664
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.9e-30 Score=308.09 Aligned_cols=280 Identities=24% Similarity=0.253 Sum_probs=209.9
Q ss_pred CeeEEEcCCCCCC-CCCccccC--CCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879 96 RVSLLDCTLSNVT-VLPGKFLE--GVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172 (694)
Q Consensus 96 ~L~~Ldls~n~l~-~lp~~~~~--~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~ 172 (694)
.|+.|++++|.+. .+|..+.. +++|++|++++|.+....+..|..+. +|++|++++|.+++..+..+..+ ++|++
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~ 446 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSL-SKLRD 446 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGC-TTCCE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcC-CCCCE
Confidence 6777777777764 34555444 55677777777777655555555544 37777777777765555566666 67777
Q ss_pred EEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252 (694)
Q Consensus 173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l 252 (694)
|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 77777777766666666777777777777777766666677777777777777777766777777777777777777777
Q ss_pred CCCCCCCCCCCccccceeeccCCccccc----------------------------------------------------
Q psy8879 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSV---------------------------------------------------- 280 (694)
Q Consensus 253 ~~~i~p~~~~~l~~L~~L~Ls~N~L~~i---------------------------------------------------- 280 (694)
.+.+ |..+..+++|+.|++++|.+++.
T Consensus 527 ~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 527 SGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp EEEC-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred cCcC-CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 6544 56666677777777777766532
Q ss_pred ------------------ccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCee
Q psy8879 281 ------------------RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 342 (694)
Q Consensus 281 ------------------~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L 342 (694)
.+..+.++++|+.|+|++|++++..+..|+.++.|+.|+|++|++++..|..|+++++|+.|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 22335556789999999999998888899999999999999999999999999999999999
Q ss_pred ecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 343 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 343 ~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
||++|++++..|..+..+++|++|++++|++++..+
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999888889999999999999999986443
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.2e-30 Score=270.49 Aligned_cols=254 Identities=29% Similarity=0.365 Sum_probs=177.9
Q ss_pred cEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEec
Q psy8879 121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200 (694)
Q Consensus 121 ~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls 200 (694)
+.++.+++.++.++.+ .+++|++|++++|.++.+++..|..+ ++|++|+|++|.++.+.+..|.++++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcC----CCCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 3455566666655432 22345555665555555555555555 555555555555555555555555555555555
Q ss_pred CCC-CCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc
Q psy8879 201 YNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279 (694)
Q Consensus 201 ~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~ 279 (694)
+|. +..+.+..|..+++|++| ++++|.+.+ +.+..+..+++|++|++++|.+++
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L------------------------~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTL------------------------HLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEE------------------------ECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccccCHHHhcCCcCCCEE------------------------ECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccc
Confidence 554 555544444444455544 455554443 235556666677777777777777
Q ss_pred cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCC
Q psy8879 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359 (694)
Q Consensus 280 i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~ 359 (694)
+++..|.++++|++|++++|+++.+++..|..+++|+.|++++|+++++.+..|..+++|+.|+|++|+++++++..+..
T Consensus 144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 76666777788888888888888887777888888999999999999988888999999999999999999999999999
Q ss_pred CCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccCCccCccccCCccc
Q psy8879 360 LKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVV 417 (694)
Q Consensus 360 l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~~~~~~~C~~~~~~ 417 (694)
+++|+.|++++|+|. |+|...|+..|++... .....+.|..|...
T Consensus 224 l~~L~~L~l~~N~~~------------c~~~~~~~~~~l~~~~-~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 224 LRALQYLRLNDNPWV------------CDCRARPLWAWLQKFR-GSSSEVPCSLPQRL 268 (285)
T ss_dssp CTTCCEEECCSSCEE------------CSGGGHHHHHHHHHCC-SEECCCBEEESGGG
T ss_pred CcccCEEeccCCCcc------------CCCCcHHHHHHHHhcc-cccCccccCCchHh
Confidence 999999999999999 9999999999997432 33446778766543
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.9e-29 Score=266.87 Aligned_cols=297 Identities=23% Similarity=0.367 Sum_probs=253.8
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCC
Q psy8879 53 PWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELK 131 (694)
Q Consensus 53 ~~~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~ 131 (694)
...||. .|.|.. ..+.|... .+..+|..+. ..++.|++++|.++.++ ..+..+++|++|++++|.++
T Consensus 24 ~~~cp~----~c~c~l-~~l~~~~~--~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 91 (332)
T 2ft3_A 24 SAMCPF----GCHCHL-RVVQCSDL--GLKAVPKEIS-----PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91 (332)
T ss_dssp -CCCCS----SCEEET-TEEECCSS--CCSSCCSCCC-----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCCC----CCcccC-CEEECCCC--CccccCCCCC-----CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC
Confidence 345776 788874 45777654 3455555442 38999999999999885 47889999999999999999
Q ss_pred CCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC--CCc
Q psy8879 132 NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT--LSQ 209 (694)
Q Consensus 132 ~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~--i~~ 209 (694)
.+.+..|.++. +|++|++++|.++.+|...+ ++|++|++++|.++.+++..|.++++|++|++++|.++. +.+
T Consensus 92 ~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 92 KIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp EECGGGSTTCT-TCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred ccCHhHhhCcC-CCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 99888887765 49999999999999988643 689999999999999999899999999999999999964 677
Q ss_pred cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289 (694)
Q Consensus 210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~ 289 (694)
..|..+ +|++|++++|++++ +|..+. ++|++|++++|.+.+ +.+..+..+++|+.|++++|.++++++..+..++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 778888 99999999999986 444443 689999999999997 4578899999999999999999999988899999
Q ss_pred ccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc------cccCeeecCCCCCC--CcChhhhCCCC
Q psy8879 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL------SNLTTLDLSHNFLR--ALTQDLITPLK 361 (694)
Q Consensus 290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l------~~L~~L~Ls~N~L~--~l~~~~~~~l~ 361 (694)
+|++|++++|+++.++. .+..+++|+.|++++|+++++++..|... ..|+.|++++|.+. ++++..|..++
T Consensus 242 ~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 99999999999998876 48899999999999999999988877653 67999999999998 78888999999
Q ss_pred CCCEEEccCCC
Q psy8879 362 SLQELRLDDND 372 (694)
Q Consensus 362 ~L~~L~Ls~N~ 372 (694)
+|+.+++++|+
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 99999999885
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.6e-29 Score=266.76 Aligned_cols=298 Identities=22% Similarity=0.372 Sum_probs=253.5
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCC
Q psy8879 53 PWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELK 131 (694)
Q Consensus 53 ~~~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~ 131 (694)
...||. .|.|.. ..+.|.... +..+|..+. ..++.|++++|+++.++. .+..+++|++|++++|.++
T Consensus 22 ~~~cp~----~c~c~l-~~l~~~~~~--l~~lp~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (330)
T 1xku_A 22 GPVCPF----RCQCHL-RVVQCSDLG--LEKVPKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89 (330)
T ss_dssp CCCCCT----TCEEET-TEEECTTSC--CCSCCCSCC-----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCCC----CCcCCC-eEEEecCCC--ccccCccCC-----CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC
Confidence 345777 788864 457776532 444554432 389999999999999876 6888999999999999999
Q ss_pred CCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC--CCc
Q psy8879 132 NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT--LSQ 209 (694)
Q Consensus 132 ~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~--i~~ 209 (694)
.+.+..|.++. +|++|++++|.++.+|...+ ++|++|++++|.++.+++..|.++++|++|++++|.+.. +.+
T Consensus 90 ~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 90 KISPGAFAPLV-KLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred eeCHHHhcCCC-CCCEEECCCCcCCccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 99888887765 49999999999999987543 689999999999999999999999999999999999964 667
Q ss_pred cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289 (694)
Q Consensus 210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~ 289 (694)
..|..+++|++|++++|+++. +|..+. ++|++|++++|.+.+ +.+..+..+++|+.|++++|.++++++..+.+++
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 789999999999999999985 444433 799999999999986 4478899999999999999999999888899999
Q ss_pred ccceecccCCccccccchhhhcccccccccCCCCccccccccchhc------ccccCeeecCCCCCCC--cChhhhCCCC
Q psy8879 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH------LSNLTTLDLSHNFLRA--LTQDLITPLK 361 (694)
Q Consensus 290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~------l~~L~~L~Ls~N~L~~--l~~~~~~~l~ 361 (694)
+|++|++++|+++.++. .+..+++|++|++++|+++++++..|.. ...|+.|++++|.+.. +++..|..+.
T Consensus 241 ~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 99999999999998876 5788999999999999999998888754 3789999999999974 7788899999
Q ss_pred CCCEEEccCCC
Q psy8879 362 SLQELRLDDND 372 (694)
Q Consensus 362 ~L~~L~Ls~N~ 372 (694)
+++.++|++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 99999999985
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=7.8e-30 Score=302.77 Aligned_cols=286 Identities=25% Similarity=0.254 Sum_probs=230.6
Q ss_pred CCeeEEEcCCCCCC-CCCcc-ccCCCCccEEEccCCCCCCCCcchhcCC--------------------------CCCcc
Q psy8879 95 ERVSLLDCTLSNVT-VLPGK-FLEGVTLHGLVISSGELKNISDGAFIGL--------------------------SSPLQ 146 (694)
Q Consensus 95 ~~L~~Ldls~n~l~-~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l--------------------------~~~L~ 146 (694)
..|+.|++++|.+. .+|.. +..+++|++|++++|.+....+..|..+ ..+|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 36677777777765 56654 6666667777776666652222222222 23477
Q ss_pred EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCC
Q psy8879 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226 (694)
Q Consensus 147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N 226 (694)
+|++++|.+++..+..+.++ ++|++|+|++|++++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp EEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 77777777775556678888 89999999999998888888999999999999999999888888999999999999999
Q ss_pred cccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc-cc
Q psy8879 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LE 305 (694)
Q Consensus 227 ~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~-i~ 305 (694)
++++..|..+.++++|++|++++|++.+.+ |..+..+++|++|+|++|++++..|..+.++++|++|++++|++++ +|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcC-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 999888999999999999999999998765 7888999999999999999998888889999999999999998873 22
Q ss_pred ch---------------------------------------------------------------------hhhcccccc
Q psy8879 306 DH---------------------------------------------------------------------SFRALSTLS 316 (694)
Q Consensus 306 ~~---------------------------------------------------------------------~f~~l~~L~ 316 (694)
.. .|..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 21 233457788
Q ss_pred cccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382 (694)
Q Consensus 317 ~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 382 (694)
.|||++|++++..|..++++++|+.|+|++|++++..|..++.+++|+.|||++|++++..+..+.
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 999999999999999999999999999999999988888899999999999999999965554443
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=300.30 Aligned_cols=303 Identities=22% Similarity=0.267 Sum_probs=230.8
Q ss_pred CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCC-CCCCCCcchhcCC
Q psy8879 64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSG-ELKNISDGAFIGL 141 (694)
Q Consensus 64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n-~i~~i~~~~F~~l 141 (694)
|.|. ...+.|.. ..++.+|. + +..++.||+++|.++.+ |..|..+++|++|++++| .+..+++.+|.++
T Consensus 2 C~~~-~~~~dcs~--~~L~~vP~-l-----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L 72 (844)
T 3j0a_A 2 CSFD-GRIAFYRF--CNLTQVPQ-V-----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL 72 (844)
T ss_dssp CBTT-TEEEEESC--CCSSCCCS-S-----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred ceEe-ceEEEccC--CCCCCCCC-C-----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC
Confidence 5554 34566654 34666665 2 23899999999999876 677889999999999988 5567777888776
Q ss_pred CCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc--ccccCCCCccEEEecCCCCCCCCc-cccCCCCCC
Q psy8879 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTL 218 (694)
Q Consensus 142 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~--~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L 218 (694)
. +|++|+|++|.++.+++..|.++ ++|++|+|++|.+++..+ ..|.++++|++|+|++|.+.++.+ ..|.++++|
T Consensus 73 ~-~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 73 P-NLRILDLGSSKIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp T-TCCEEECTTCCCCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred C-CCCEEECCCCcCcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 5 49999999999999988889999 999999999999987433 348899999999999999988765 578999999
Q ss_pred cEEeccCCcccchhhhhhccC--cccccccCCCCcCCCCCCCCCCCC---------------------------------
Q psy8879 219 RVLRLQGNRLTVSVVAALQGL--RSVTDLDLSHNLLAGPLGPSTVPR--------------------------------- 263 (694)
Q Consensus 219 ~~L~Ls~N~l~~~~~~~~~~L--~~L~~L~Ls~N~l~~~i~p~~~~~--------------------------------- 263 (694)
++|++++|.+++..+..+..+ ++|+.|++++|.+.+.. +..+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 999999999887766666554 44555554444443321 111111
Q ss_pred -----------------------------------ccccceeeccCCcccccccccccCCcccceecccCCccccccchh
Q psy8879 264 -----------------------------------LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS 308 (694)
Q Consensus 264 -----------------------------------l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~ 308 (694)
.++|+.|++++|.+.++.+..|..+++|+.|+|++|+++.+++..
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 146777777777777777777777788888888888888777777
Q ss_pred hhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 309 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 309 f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|++..+++..|..+++|+.|++++|+++.++.
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 8888888888888888888777778888888888888888888877777778888888888888876654
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.4e-29 Score=294.40 Aligned_cols=232 Identities=21% Similarity=0.323 Sum_probs=133.4
Q ss_pred CccEEEccCCCCCC------------------CCccccc--cCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCC
Q psy8879 144 PLQALGLPNNLLSV------------------VPTSALA--PLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK 203 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~------------------lp~~~~~--~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~ 203 (694)
+|++|+|++|.+++ +|. .+. ++ ++|++|+|++|.+.+..+..|+++++|++|++++|+
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCch-hhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 36666666666665 444 244 55 566666666666555555556666666666666665
Q ss_pred -CCC-CCccccCCC------CCCcEEeccCCcccchhhh--hhccCcccccccCCCCcCCCCCCCCCCCCccccceeecc
Q psy8879 204 -LMT-LSQDCLAPL------VTLRVLRLQGNRLTVSVVA--ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273 (694)
Q Consensus 204 -l~~-i~~~~f~~L------~~L~~L~Ls~N~l~~~~~~--~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls 273 (694)
+++ ..|..+..+ ++|++|++++|+++ .+|. .+.++++|++|++++|.+.|.+ | .+..+++|++|+++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCEEEEEESEEECC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch-h-hhCCCCCCCEEECC
Confidence 554 334334443 56666666666666 4454 5666666666666666665444 3 55556666666666
Q ss_pred CCcccccccccccCCcc-cceecccCCccccccchhhhccc--ccccccCCCCccccccccchh-------cccccCeee
Q psy8879 274 HNQFSSVRRGALAGLDK-LTSLSCHHNQIDVLEDHSFRALS--TLSHLDLAHNRIVAVSGASLA-------HLSNLTTLD 343 (694)
Q Consensus 274 ~N~L~~i~~~~~~~L~~-L~~L~Ls~N~L~~i~~~~f~~l~--~L~~L~Ls~N~L~~i~~~~f~-------~l~~L~~L~ 343 (694)
+|.++.++. .+.++++ |++|++++|.++.++. .+..++ +|+.|++++|++++..|..|. .+++|+.|+
T Consensus 362 ~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEEECCT-TSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccccccH-hhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 666664433 3555555 6666666666665443 333322 566666666666665555555 455666666
Q ss_pred cCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879 344 LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382 (694)
Q Consensus 344 Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 382 (694)
|++|++++++...+..+++|+.|+|++|+++.+|...|.
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 666666666555555556666666666666655555544
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.6e-29 Score=279.45 Aligned_cols=143 Identities=25% Similarity=0.323 Sum_probs=116.0
Q ss_pred cEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEE
Q psy8879 71 TLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALG 149 (694)
Q Consensus 71 ~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~ 149 (694)
.+.|..+ .++.+|..+. ..++.|++++|.++.++ ..+..+++|++|++++|.++.+.+..|.++. +|++|+
T Consensus 4 ~l~ls~n--~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~ 75 (520)
T 2z7x_B 4 LVDRSKN--GLIHVPKDLS-----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-ELEYLD 75 (520)
T ss_dssp EEECTTS--CCSSCCCSCC-----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-TCCEEE
T ss_pred eEecCCC--Cccccccccc-----ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-CCCEEe
Confidence 3555443 3445665543 58999999999998886 5788999999999999999999888888776 499999
Q ss_pred ccCCCCCCCCccccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCCCCC--cEEeccCC
Q psy8879 150 LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL--RVLRLQGN 226 (694)
Q Consensus 150 Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L--~~L~Ls~N 226 (694)
|++|.++.+|.. .+ ++|++|+|++|.+++++ +..|+++++|++|++++|.+++. .|..+++| ++|++++|
T Consensus 76 Ls~N~l~~lp~~---~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 76 LSHNKLVKISCH---PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCSSCCCEEECC---CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEEC
T ss_pred cCCCceeecCcc---cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecc
Confidence 999999998875 66 89999999999999863 57899999999999999998762 35555666 77777777
Q ss_pred cc
Q psy8879 227 RL 228 (694)
Q Consensus 227 ~l 228 (694)
.+
T Consensus 149 ~l 150 (520)
T 2z7x_B 149 ET 150 (520)
T ss_dssp TT
T ss_pred cc
Confidence 66
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-28 Score=281.74 Aligned_cols=148 Identities=23% Similarity=0.281 Sum_probs=124.6
Q ss_pred eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879 97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls 176 (694)
.+.+||++++++.+|..+. ++|++|++++|.++.+++..|.++.. |++|+|++|.++++++..|.++ ++|++|+|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSE-LRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTT-CCEEECCSCCCCEECTTTTTTC-TTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCC-ccEEECCCCCCCcCCHHHhCCC-CCCCEEECC
Confidence 3789999999999998775 78999999999999999888988764 9999999999999998899999 999999999
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCC-ccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l 252 (694)
+|+++.++.. .+++|++|++++|++++++ +..|.++++|++|++++|++++.....+..+ +|++|++++|.+
T Consensus 109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 9999988865 7999999999999999876 4789999999999999999875322222222 225555555544
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=6.3e-28 Score=258.35 Aligned_cols=264 Identities=26% Similarity=0.342 Sum_probs=215.9
Q ss_pred CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879 94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173 (694)
Q Consensus 94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L 173 (694)
...|+.|++++|.++.++. +..+++|++|++++|.++.++ .|.++. +|++|++++|.++.+++ +..+ ++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~-~L~~L~l~~n~i~~~~~--~~~l-~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLT-NLRELYLNEDNISDISP--LANL-TKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCT-TCSEEECTTSCCCCCGG--GTTC-TTCCEE
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCC-cCCEEECcCCcccCchh--hccC-CceeEE
Confidence 4478889999998888877 888888999999988888874 455544 59999999998888876 6777 889999
Q ss_pred EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253 (694)
Q Consensus 174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~ 253 (694)
++++|......+ .+..+++|++|++++|.+..+.+ +..+++|++|++++|++.+..+ +..+++|+.|++++|.+.
T Consensus 138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 998885444332 37888889999999888887765 7788889999999998876443 778888899999988887
Q ss_pred CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333 (694)
Q Consensus 254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f 333 (694)
+.. + +..+++|++|++++|.++++++ +..+++|++|++++|.++.++ .+..+++|+.|++++|+++++ ..+
T Consensus 213 ~~~-~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 213 DIT-P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp CCG-G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred CCc-h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhh
Confidence 632 2 7788899999999999888765 788889999999999888874 578888999999999998887 347
Q ss_pred hcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 334 ~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
..+++|+.|++++|++++.++..+..+++|+.|++++|+++++++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 888999999999999988888888889999999999999887765
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.4e-29 Score=289.45 Aligned_cols=292 Identities=21% Similarity=0.232 Sum_probs=249.4
Q ss_pred hhhhhhhcCCCCCCCCeeEEEcCCCCCCC------------------CCcccc--CCCCccEEEccCCCCCCCCcchhcC
Q psy8879 81 LYAISESLRGLEPDERVSLLDCTLSNVTV------------------LPGKFL--EGVTLHGLVISSGELKNISDGAFIG 140 (694)
Q Consensus 81 l~~i~~~L~~l~~~~~L~~Ldls~n~l~~------------------lp~~~~--~~~~L~~L~Ls~n~i~~i~~~~F~~ 140 (694)
+..+|..+..+ ..|+.|++++|.++. +|..+. ++++|++|++++|.+....+..|.+
T Consensus 195 l~~ip~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 195 ITFVSKAVMRL---TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp EEEECGGGGGC---TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CccCCHHHhcc---cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 33456666554 489999999999988 999998 9999999999999988766667766
Q ss_pred CCCCccEEEccCCC-CCC--CCcccccc------CCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCcc
Q psy8879 141 LSSPLQALGLPNNL-LSV--VPTSALAP------LAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQD 210 (694)
Q Consensus 141 l~~~L~~L~Ls~N~-L~~--lp~~~~~~------l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~~ 210 (694)
+. +|++|++++|+ +++ +|.. +.. + ++|++|++++|+++.++. ..|+++++|++|++++|++++..|
T Consensus 272 l~-~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l-~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 272 LP-EMQLINVACNRGISGEQLKDD-WQALADAPVG-EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp CS-SCCEEECTTCTTSCHHHHHHH-HHHHHHSGGG-GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred CC-CCCEEECcCCCCCccccchHH-HHhhhccccC-CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 65 59999999998 885 5553 333 4 799999999999997764 379999999999999999994445
Q ss_pred ccCCCCCCcEEeccCCcccchhhhhhccCcc-cccccCCCCcCCCCCCCCCCCCcc--ccceeeccCCccccccccccc-
Q psy8879 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRS-VTDLDLSHNLLAGPLGPSTVPRLS--SLKVLSIAHNQFSSVRRGALA- 286 (694)
Q Consensus 211 ~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~-L~~L~Ls~N~l~~~i~p~~~~~l~--~L~~L~Ls~N~L~~i~~~~~~- 286 (694)
.|..+++|++|++++|+++ .+|..+.++++ |++|++++|.+.+ + |..+..++ +|+.|++++|.+++..+..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-C-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-c-chhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 7899999999999999999 67888999999 9999999999984 5 66666654 899999999999998877777
Q ss_pred ------CCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhccc-------ccCeeecCCCCCCCcC
Q psy8879 287 ------GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-------NLTTLDLSHNFLRALT 353 (694)
Q Consensus 287 ------~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~-------~L~~L~Ls~N~L~~l~ 353 (694)
.+++|++|++++|.++.++...+..+++|+.|+|++|+++.++...+.... +|+.|+|++|+++.++
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 778999999999999999988888899999999999999988777666543 9999999999999888
Q ss_pred hhhh-CCCCCCCEEEccCCCCCCCCccccc
Q psy8879 354 QDLI-TPLKSLQELRLDDNDISMEPECIYV 382 (694)
Q Consensus 354 ~~~~-~~l~~L~~L~Ls~N~L~~l~~~~f~ 382 (694)
...+ ..+++|+.|+|++|+++++|..+..
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~ 534 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred hhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence 7654 4899999999999999998876654
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=6e-29 Score=263.94 Aligned_cols=247 Identities=21% Similarity=0.199 Sum_probs=134.3
Q ss_pred CeeEEEcCCCCCC---CCCccccCCCCccEEEccC-CCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCcc
Q psy8879 96 RVSLLDCTLSNVT---VLPGKFLEGVTLHGLVISS-GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171 (694)
Q Consensus 96 ~L~~Ldls~n~l~---~lp~~~~~~~~L~~L~Ls~-n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~ 171 (694)
+++.|+++++++. .+|..+..+++|++|++++ |.+....+..|..+. +|++|++++|.+++..+..|.++ ++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI-KTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGC-TTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCC-CCCC
Confidence 7888888888886 4677776666666666663 555544444444433 25555555555553333345555 5555
Q ss_pred EEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCC-CCcEEeccCCcccchhhhhhccCcccccccCCCC
Q psy8879 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250 (694)
Q Consensus 172 ~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N 250 (694)
+|+|++|.+++..+..|.++++|++|++++|++++..|..+..++ +|++|++++|++++..|..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l----------- 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------- 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence 555555555544444455555555555555555544444444444 45555555555554444444444
Q ss_pred cCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccc
Q psy8879 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330 (694)
Q Consensus 251 ~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~ 330 (694)
+ |++|++++|.+++..+..|.++++|++|++++|.++...+. +..+++|++|+|++|++++..|
T Consensus 198 --------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 198 --------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp --------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred --------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence 3 55555555555544444555555555555555555543332 4445555555565555555555
Q ss_pred cchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372 (694)
Q Consensus 331 ~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~ 372 (694)
..|..+++|+.|+|++|++++..+.. ..+++|+.+++++|+
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555566666666666655433332 445556666666655
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=1.6e-28 Score=255.07 Aligned_cols=251 Identities=26% Similarity=0.339 Sum_probs=193.4
Q ss_pred EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCC
Q psy8879 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226 (694)
Q Consensus 147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N 226 (694)
.++..+..+..+|.. + +++|++|++++|.++.+++..|.++++|++|++++|+++++++..|..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~-l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-L---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSS-S---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCC-C---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 344555556666653 2 245677777777777666666677777777777777777766666777777777777777
Q ss_pred cccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccc-cccccCCcccceecccCCcccccc
Q psy8879 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLE 305 (694)
Q Consensus 227 ~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~-~~~~~~L~~L~~L~Ls~N~L~~i~ 305 (694)
++++..+..|.++++|++|++++|.+.+ +.+..+..+++|++|++++|.++++. +..+.++++|++|++++|+++.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 7776666677777777777777777765 33556778888888888888888754 667888889999999999998888
Q ss_pred chhhhcccccc----cccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccc
Q psy8879 306 DHSFRALSTLS----HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY 381 (694)
Q Consensus 306 ~~~f~~l~~L~----~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 381 (694)
+..|..+++|+ .|++++|+++++++..+.. .+|+.|+|++|+++++++..+..+++|+.|++++|+|+
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 237 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD------- 237 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC-------
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc-------
Confidence 88888888887 8899999999998776654 48999999999999999998999999999999999999
Q ss_pred cCCCCCCcc-cccccccccccccCCccCccccCCc
Q psy8879 382 VGFNTMDLE-LIYSGVWRHSTLLIPVMLSLCTRSS 415 (694)
Q Consensus 382 ~~~NpCdC~-l~~~~~wl~~~~~~~~~~~~C~~~~ 415 (694)
|+|. +.|+..|++...........|..+.
T Consensus 238 -----c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~ 267 (276)
T 2z62_A 238 -----CSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267 (276)
T ss_dssp -----CCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred -----ccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence 9996 7889999975554455567887653
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=277.03 Aligned_cols=143 Identities=26% Similarity=0.357 Sum_probs=125.3
Q ss_pred hccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccc-cccchhhhcccc
Q psy8879 236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLEDHSFRALST 314 (694)
Q Consensus 236 ~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~-~i~~~~f~~l~~ 314 (694)
+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+.++++|++|++++|.++ ...+..|..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4555666666666666665443467889999999999999999998889999999999999999997 344568999999
Q ss_pred cccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 315 L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
|+.|++++|+++++.+..|..+++|+.|+|++|+++++++..+..+++|+.|++++|++++-.+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999987544
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.6e-27 Score=255.21 Aligned_cols=260 Identities=24% Similarity=0.331 Sum_probs=229.6
Q ss_pred CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879 94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173 (694)
Q Consensus 94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L 173 (694)
...|+.|++++|.++.++ .+..+++|++|++++|.+..++. |..+ ++|++|++++|......+. +..+ ++|++|
T Consensus 87 l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~~~-~~~l-~~L~~L 160 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDLSP-LSNM-TGLNYL 160 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCCGG-GTTC-TTCCEE
T ss_pred CCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCcccccc-hhhC-CCCcEE
Confidence 458999999999999986 58899999999999999998865 5554 4599999999955444433 7888 999999
Q ss_pred EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253 (694)
Q Consensus 174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~ 253 (694)
++++|.+..+++ +..+++|++|++++|.+.++.+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence 999999998875 8899999999999999998876 8889999999999999987655 888999999999999998
Q ss_pred CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333 (694)
Q Consensus 254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f 333 (694)
+. ++ +..+++|++|++++|.+++++ .+..+++|++|++++|+++.++ .+..+++|+.|++++|++++..+..+
T Consensus 235 ~~-~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 235 DL-SP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CC-GG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CC-cc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHh
Confidence 63 23 889999999999999999873 5889999999999999999884 58899999999999999999999999
Q ss_pred hcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 334 ~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~ 374 (694)
..+++|+.|++++|+++++++ +..+++|+.|++++|+|+
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999999887 778999999999999986
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-28 Score=256.55 Aligned_cols=251 Identities=23% Similarity=0.294 Sum_probs=186.5
Q ss_pred eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879 98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH 177 (694)
Q Consensus 98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~ 177 (694)
+.++|++++++.+|..+. ++|++|++++|.++.++...|..+. +|++|++++|.++.+++..|.++ ++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCc-cCCCEEeCCC
Confidence 456777777777776553 5788888888888888777776654 48888888888888877778887 8888888888
Q ss_pred CC-CCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879 178 NQ-LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256 (694)
Q Consensus 178 N~-L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i 256 (694)
|. ++.+.+..|.++++|++|++++|.++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ +
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-V 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-E
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-c
Confidence 86 777777778888888888888888888877778888888888888888877666667777888888888887775 4
Q ss_pred CCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336 (694)
Q Consensus 257 ~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l 336 (694)
++..+..+++|+.|++++|.++++.+..|.++++|++|++++|.++.+++..|..+++|+.|++++|++....+.. +..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence 4556777788888888888888777777777788888888888888777777777788888888888776542211 112
Q ss_pred cccCeeecCCCCCCCcCh
Q psy8879 337 SNLTTLDLSHNFLRALTQ 354 (694)
Q Consensus 337 ~~L~~L~Ls~N~L~~l~~ 354 (694)
..++.+..+.+.+....|
T Consensus 248 ~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHHCCSEECCCBEEES
T ss_pred HHHHhcccccCccccCCc
Confidence 334444555565554333
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3e-28 Score=265.65 Aligned_cols=253 Identities=21% Similarity=0.241 Sum_probs=222.3
Q ss_pred CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCcc
Q psy8879 116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195 (694)
Q Consensus 116 ~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~ 195 (694)
.+.+++.|+++++.++.++...|.++.. |++|++++|.++.+++..|..+ ++|++|+|++|.++.+++..|.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhccccc-CcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4578999999999999999988877765 9999999999999999889999 9999999999999999999999999999
Q ss_pred EEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccc---------
Q psy8879 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS--------- 266 (694)
Q Consensus 196 ~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~--------- 266 (694)
+|++++|+++.+++..|..+++|++|++++|++++..+..+.++++|++|++++|.+.+ ++ +..+++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccc
Confidence 99999999999999889999999999999999998888899999999999999999985 22 333444
Q ss_pred ----------cceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879 267 ----------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336 (694)
Q Consensus 267 ----------L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l 336 (694)
|++|++++|.+..++.. ..++|++|++++|.++..+ .+..+++|+.|++++|.++++.+..|..+
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cccccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 55555555555555332 2468999999999998763 68899999999999999999999999999
Q ss_pred cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380 (694)
Q Consensus 337 ~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 380 (694)
++|+.|+|++|++++++.. +..+++|+.|++++|+++.+|..+
T Consensus 272 ~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 314 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ 314 (390)
T ss_dssp SSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGGH
T ss_pred ccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcceecCccc
Confidence 9999999999999998654 567999999999999999998764
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.95 E-value=3.3e-29 Score=271.32 Aligned_cols=290 Identities=21% Similarity=0.222 Sum_probs=182.2
Q ss_pred cEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccC-CCCCCcEEeccCCcccchhhhhhccCcccccccCCC
Q psy8879 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA-PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249 (694)
Q Consensus 171 ~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~-~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~ 249 (694)
+.++++++.++.++.... +.++.|+|++|+|+++++..|. .+++|++|+|++|++++..
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~----------------- 80 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS----------------- 80 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-----------------
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-----------------
Confidence 456666666666553211 2355666666666665555554 5555555555555555433
Q ss_pred CcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccccc
Q psy8879 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329 (694)
Q Consensus 250 N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~ 329 (694)
+..|..+++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|.++++|+.|+|++|+|++++
T Consensus 81 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 81 --------SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp --------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred --------hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 444555566666666666666666666666666777777777776666666777777777777777777776
Q ss_pred ccch---hcccccCeeecCCCCCCCcChhhhCCCCC--CCEEEccCCCCCCCCcccccCCCCCCcccccc-cccccccc-
Q psy8879 330 GASL---AHLSNLTTLDLSHNFLRALTQDLITPLKS--LQELRLDDNDISMEPECIYVGFNTMDLELIYS-GVWRHSTL- 402 (694)
Q Consensus 330 ~~~f---~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~--L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~-~~wl~~~~- 402 (694)
+..| ..+++|+.|+|++|+|+.++...+..++. ++.|+|++|+|. |||++.|+ ..|+....
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~------------C~C~l~~~~~~~~~~~~~ 220 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE------------CDCKLYQLFSHWQYRQLS 220 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE------------CCHHHHHHHHHHHHTTCH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc------------CCcCcHHHHHHHHHhcCC
Confidence 6665 56788889999999998888877777776 488999999999 99999875 67875322
Q ss_pred --cCCccCccccCCcccceeeE-----EEE-EeecCccccceeeeeceeE------EEEeccCccccccceeEeeeeEEe
Q psy8879 403 --LIPVMLSLCTRSSVVTRYRY-----CVV-LIEGSNILDQSALVLGCSE------ILALVPTLTSQPLSYVTSLRANVT 468 (694)
Q Consensus 403 --~~~~~~~~C~~~~~~~~~~~-----~~v-~~~~~~~~~~~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~ 468 (694)
......+.|..|....+... |.. ........++..+.+.|.+ +.|..+++.... ......++.+
T Consensus 221 ~~~~~~~~~~C~~p~~~~~~~~~~~~~C~~~~~~~v~v~~G~~~~l~C~~~gp~p~i~W~~~~~~~~~-~~~~~~r~~~- 298 (361)
T 2xot_A 221 SVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL-SQGSNGSVSV- 298 (361)
T ss_dssp HHHTTGGGCEEESSSCCEEGGGCCCTTCCSCCCCCCEEETTCCEEECCCCSSTTCEEEEECTTSCBCC-SCCSSSSEEE-
T ss_pred chhccCcCCEeCCChHHcCccccccccCCCccccCceecCCCeEEEEeEeeCCCCeEEEEeCCCeeEe-ecccCCceEe-
Confidence 11134677876543211100 000 0001123344455666755 777776665441 1122234555
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.+|+| |.+|+.+|+|.|+|+|+|..+.+...+..
T Consensus 299 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 333 (361)
T 2xot_A 299 RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333 (361)
T ss_dssp ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEE
T ss_pred ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEE
Confidence 67888 99999999999999999996665554433
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.3e-27 Score=274.66 Aligned_cols=280 Identities=27% Similarity=0.371 Sum_probs=233.0
Q ss_pred CCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879 94 DERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172 (694)
Q Consensus 94 ~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~ 172 (694)
...|+.||+++|+|+.+++ .|..+++|++|+|++|+|+.++.+.|.++.. |++|+|++|+++.+++..|.++ ++|++
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~-L~~L~Ls~N~l~~l~~~~~~~L-~~L~~ 152 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHL-KTLKE 152 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT-CCEEECTTSCCCCSTTCCCTTC-TTCCE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC-CCEEECCCCcCCCCChhhhhcC-cccCe
Confidence 3489999999999999866 5788999999999999999999999988765 9999999999999999889999 99999
Q ss_pred EEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccC--------------------------------------
Q psy8879 173 LDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLA-------------------------------------- 213 (694)
Q Consensus 173 L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~-------------------------------------- 213 (694)
|+|++|.++.+. +..++++++|++|++++|+++++.+..|.
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence 999999998764 46778899999999999877654322110
Q ss_pred --------------------------------------------------------------------------------
Q psy8879 214 -------------------------------------------------------------------------------- 213 (694)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (694)
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence
Q ss_pred --------------------------------------------------------CCCCCcEEeccCCcccch------
Q psy8879 214 --------------------------------------------------------PLVTLRVLRLQGNRLTVS------ 231 (694)
Q Consensus 214 --------------------------------------------------------~L~~L~~L~Ls~N~l~~~------ 231 (694)
.+++|+.|++++|.+...
T Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence 123344444444443210
Q ss_pred --------------------------------------------hhhhhccCcccccccCCCCcCCCCCCCCCCCCcccc
Q psy8879 232 --------------------------------------------VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267 (694)
Q Consensus 232 --------------------------------------------~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L 267 (694)
....|..+.+++.++++.|.+.+ +.+..+..+++|
T Consensus 393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~-~~~~~~~~~~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTC
T ss_pred hhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc-ccccccccchhh
Confidence 01123445566677777787775 447788899999
Q ss_pred ceeeccCCcc-cccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCC
Q psy8879 268 KVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346 (694)
Q Consensus 268 ~~L~Ls~N~L-~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~ 346 (694)
+.|++++|.+ ..+.+..|..+++|++|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|.++++|+.|+|++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 9999999974 456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcChhhhCCC-CCCCEEEccCCCCCCC
Q psy8879 347 NFLRALTQDLITPL-KSLQELRLDDNDISME 376 (694)
Q Consensus 347 N~L~~l~~~~~~~l-~~L~~L~Ls~N~L~~l 376 (694)
|+|+++++..+..+ ++|+.|+|++|+|..-
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999888 6899999999999864
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.1e-29 Score=265.27 Aligned_cols=228 Identities=22% Similarity=0.285 Sum_probs=186.7
Q ss_pred ccEEEccCCCCCC--CCccccccCCCCccEEEccC-CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEE
Q psy8879 145 LQALGLPNNLLSV--VPTSALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL 221 (694)
Q Consensus 145 L~~L~Ls~N~L~~--lp~~~~~~l~~~L~~L~Ls~-N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L 221 (694)
++.|+|++|.+++ ..+..+.++ ++|++|+|++ |.+.+..+..|.++++|++|++++|++++..+..|..+++|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 5555555555554 223356666 7778888874 77776666677778888888888888776667777778888888
Q ss_pred eccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcc-ccceeeccCCcccccccccccCCcccceecccCCc
Q psy8879 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS-SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300 (694)
Q Consensus 222 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~ 300 (694)
++++|++++..|..+..+++|++|++++|.+.+.+ |..+..++ +|++|++++|.+++..+..+..++ |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888777778888888888888888887655 66677777 899999999999987788888887 9999999999
Q ss_pred cccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376 (694)
Q Consensus 301 L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l 376 (694)
++...+..|..+++|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 9999999999999999999999999987666 78899999999999999987778899999999999999999843
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.4e-28 Score=277.70 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=165.3
Q ss_pred EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCC
Q psy8879 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179 (694)
Q Consensus 100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~ 179 (694)
.|++.++++.+|..+. ++|++|++++|.++.+.+..|.++. +|++|++++|.++.+++.+|.++ ++|++|+|++|.
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhcccc-ccCCEEECCCCc
Confidence 7899999999999775 6899999999999999888887765 59999999999999999899999 999999999999
Q ss_pred CCCCCcccccCCCCccEEEecCCCCCCCC-ccccCCCCCCcEEeccCCc-ccchhhhhhccCcccccccCCCCcCCCCCC
Q psy8879 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNR-LTVSVVAALQGLRSVTDLDLSHNLLAGPLG 257 (694)
Q Consensus 180 L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~~L~Ls~N~-l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~ 257 (694)
++++++..|+++++|++|++++|.++++. +..|..+++|++|++++|+ +....+..|.++++|++|++++|.+.+..
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 164 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ- 164 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-
Confidence 99999988999999999999999999753 4679999999999999998 44444578999999999999999998744
Q ss_pred CCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303 (694)
Q Consensus 258 p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~ 303 (694)
+..+..+++|+.|++++|.+..++...+..+++|++|++++|+++.
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 7777777777666666666655544333445555555555555443
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.9e-27 Score=264.34 Aligned_cols=261 Identities=29% Similarity=0.419 Sum_probs=151.3
Q ss_pred CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879 94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173 (694)
Q Consensus 94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L 173 (694)
...|+.|++++|.++.+++ +..+++|++|++++|.+..+++ |..+ ++|++|++++|.++++++ +.++ ++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNL-TNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GTTC-TTCSEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCC-CCCCEEECCCCCCCCChH--HcCC-CCCCEE
Confidence 3477888888888877776 7777788888888888877765 4444 348888888888877765 6677 778888
Q ss_pred EccCCCCCCCCc-------------------ccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhh
Q psy8879 174 DLSHNQLYKLEN-------------------TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA 234 (694)
Q Consensus 174 ~Ls~N~L~~i~~-------------------~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~ 234 (694)
++++|.++.++. ..+.++++|++|++++|.+..+.. +..+++|++|++++|.+.+..+
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccccc-
Confidence 888777766542 113444455555555555554422 4455555555555555554333
Q ss_pred hhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccc
Q psy8879 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314 (694)
Q Consensus 235 ~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~ 314 (694)
+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.++++++ +.++++|++|++++|.++.+++ +..+++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred -ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 4444555555555555543 1 234445555555555555555443 4455555555555555555443 445555
Q ss_pred cccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376 (694)
Q Consensus 315 L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l 376 (694)
|+.|++++|+++++.+ +..+++|+.|+|++|+++++++ +..+++|+.|++++|+++++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 5555555555555433 4455555555555555555443 34455555555555555544
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=265.58 Aligned_cols=273 Identities=22% Similarity=0.292 Sum_probs=231.6
Q ss_pred EccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccC
Q psy8879 74 CTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPN 152 (694)
Q Consensus 74 C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~ 152 (694)
|......++.+|..+. ..++.|++++|+++.++. .+..+++|++|++++|.++.+.+..|.++. +|++|++++
T Consensus 36 c~~~~~~l~~iP~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCTTCC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCS
T ss_pred eeCCCCCccccccccc-----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCC
Confidence 3334455666776553 389999999999999877 688899999999999999999888888765 499999999
Q ss_pred CCCCCCCccccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCC-CCCCCCccccCCCCCCcEEeccCCcccc
Q psy8879 153 NLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYN-KLMTLSQDCLAPLVTLRVLRLQGNRLTV 230 (694)
Q Consensus 153 N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N-~l~~i~~~~f~~L~~L~~L~Ls~N~l~~ 230 (694)
|.++.+++..|.++ ++|++|++++|+++.++. ..|.++++|++|++++| .+..+.+..|..+++|++|++++|++++
T Consensus 110 n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 99999999889999 999999999999999987 68999999999999999 5888888889999999999999999999
Q ss_pred hhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccccccc---CCcccceecccCCccccc---
Q psy8879 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA---GLDKLTSLSCHHNQIDVL--- 304 (694)
Q Consensus 231 ~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~---~L~~L~~L~Ls~N~L~~i--- 304 (694)
..+..+..+++|++|++++|.+.. ++...+..+++|+.|++++|.+++++...+. ....++.++++++.++..
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred cCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 889999999999999999999874 4344455689999999999999987655433 345667777777766532
Q ss_pred -cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcCh
Q psy8879 305 -EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 354 (694)
Q Consensus 305 -~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~ 354 (694)
.+..+..+++|+.|++++|+++.++...|..+++|+.|+|++|.+....+
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23467889999999999999999988878999999999999999987654
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.6e-28 Score=278.17 Aligned_cols=274 Identities=26% Similarity=0.264 Sum_probs=244.1
Q ss_pred CCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879 93 PDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172 (694)
Q Consensus 93 ~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~ 172 (694)
....|+.++++++.+..+| .+..+++|++|++++|.+..++ .+ . .++|++|++++|...... .+..+ ++|++
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp--~~-~-l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~ 354 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP--TL-D-LPFLKSLTLTMNKGSISF--KKVAL-PSLSY 354 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC--CC-C-CSSCCEEEEESCSSCEEC--CCCCC-TTCCE
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc--cC-C-CCccceeeccCCcCccch--hhccC-CCCCE
Confidence 3458999999999999998 7888999999999999998887 34 4 456999999999543322 46677 99999
Q ss_pred EEccCCCCCCCC--cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh-hhhccCcccccccCCC
Q psy8879 173 LDLSHNQLYKLE--NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSH 249 (694)
Q Consensus 173 L~Ls~N~L~~i~--~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~ 249 (694)
|++++|.++++. +..+.++++|++|++++|.+.+++ ..|..+++|++|++++|++.+..+ ..+.++++|++|++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 999999998874 567899999999999999999876 668999999999999999998877 6899999999999999
Q ss_pred CcCCCCCCCCCCCCccccceeeccCCcccc-cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccc
Q psy8879 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSS-VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328 (694)
Q Consensus 250 N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~-i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i 328 (694)
|.+.+.. +..+..+++|++|++++|.+++ +.+..+.++++|++|++++|+++.+++..|.++++|+.|+|++|+++++
T Consensus 434 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 434 TNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp SCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred CCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence 9998744 7889999999999999999998 5677899999999999999999999999999999999999999999999
Q ss_pred cccchhcccccCeeecCCCCCCCcChhhhCCCC-CCCEEEccCCCCCCCC
Q psy8879 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDISMEP 377 (694)
Q Consensus 329 ~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~-~L~~L~Ls~N~L~~l~ 377 (694)
.|..|.++++|+.|+|++|+++.++.. +..++ +|+.|++++|+|....
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred CHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCC
Confidence 999999999999999999999998877 77776 6999999999998643
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.1e-28 Score=286.71 Aligned_cols=289 Identities=21% Similarity=0.241 Sum_probs=240.4
Q ss_pred hhhhcCCCCCCCCeeEEEcCCCCCCC------------------CCcccc--CCCCccEEEccCCCCCCCCcchhcCCCC
Q psy8879 84 ISESLRGLEPDERVSLLDCTLSNVTV------------------LPGKFL--EGVTLHGLVISSGELKNISDGAFIGLSS 143 (694)
Q Consensus 84 i~~~L~~l~~~~~L~~Ldls~n~l~~------------------lp~~~~--~~~~L~~L~Ls~n~i~~i~~~~F~~l~~ 143 (694)
+|..+..+. .|+.|++++|.++. +|..+. .+++|++|++++|.+....+..|.++.
T Consensus 440 IP~~l~~L~---~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~- 515 (876)
T 4ecn_A 440 ISKAIQRLT---KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP- 515 (876)
T ss_dssp ECGGGGGCT---TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-
T ss_pred hhHHHhcCC---CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-
Confidence 566655544 89999999999988 999987 999999999999987766667777765
Q ss_pred CccEEEccCCC-CCC--CCcc------ccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCccccC
Q psy8879 144 PLQALGLPNNL-LSV--VPTS------ALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQDCLA 213 (694)
Q Consensus 144 ~L~~L~Ls~N~-L~~--lp~~------~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~~~f~ 213 (694)
+|++|+|++|+ +++ +|.. .+..+ ++|++|+|++|.++.++. ..|.++++|++|+|++|+++.++ .|.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTG-PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT-TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhccccc-CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhc
Confidence 59999999998 886 5542 22334 599999999999997764 37999999999999999999665 699
Q ss_pred CCCCCcEEeccCCcccchhhhhhccCcc-cccccCCCCcCCCCCCCCCCCCcc--ccceeeccCCccccccccc---cc-
Q psy8879 214 PLVTLRVLRLQGNRLTVSVVAALQGLRS-VTDLDLSHNLLAGPLGPSTVPRLS--SLKVLSIAHNQFSSVRRGA---LA- 286 (694)
Q Consensus 214 ~L~~L~~L~Ls~N~l~~~~~~~~~~L~~-L~~L~Ls~N~l~~~i~p~~~~~l~--~L~~L~Ls~N~L~~i~~~~---~~- 286 (694)
.+++|++|++++|++. .+|..+.++++ |+.|++++|.+.. + |..+..++ +|+.|+|++|.+.+..+.. +.
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-C-chhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 9999999999999999 78888999998 9999999999984 5 66676664 4999999999998765432 12
Q ss_pred -CCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc-------cccCeeecCCCCCCCcChhhh-
Q psy8879 287 -GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL-------SNLTTLDLSHNFLRALTQDLI- 357 (694)
Q Consensus 287 -~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l-------~~L~~L~Ls~N~L~~l~~~~~- 357 (694)
.+++|+.|+|++|.++.++...+..+++|+.|+|++|+++.++...+... ++|+.|+|++|+++.++....
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 34589999999999999998888889999999999999998877665533 499999999999998886644
Q ss_pred CCCCCCCEEEccCCCCCCCCccccc
Q psy8879 358 TPLKSLQELRLDDNDISMEPECIYV 382 (694)
Q Consensus 358 ~~l~~L~~L~Ls~N~L~~l~~~~f~ 382 (694)
..+++|+.|+|++|+++++|..++.
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~ 774 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLN 774 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred ccCCCcCEEEeCCCCCCccchhhhc
Confidence 4899999999999999998876653
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.4e-27 Score=273.44 Aligned_cols=253 Identities=21% Similarity=0.248 Sum_probs=221.5
Q ss_pred CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCcc
Q psy8879 116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195 (694)
Q Consensus 116 ~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~ 195 (694)
.+.+++.|++++|.+..++...|.++.. |++|+|++|.++.+++..|..+ ++|++|+|++|.++++++..|+++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCC-CcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3568899999999999999988877765 9999999999999999889999 9999999999999999999999999999
Q ss_pred EEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcccc--------
Q psy8879 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL-------- 267 (694)
Q Consensus 196 ~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L-------- 267 (694)
+|+|++|.++.+++..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+ ++ +..+++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccC
Confidence 99999999999999989999999999999999999999999999999999999999986 32 3334444
Q ss_pred -----------ceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879 268 -----------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336 (694)
Q Consensus 268 -----------~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l 336 (694)
+.|++++|.+..++... .++|+.|+|++|.++.. ..+..+++|+.|+|++|.++++.+..|..+
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccccccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 44555555555444322 25789999999999875 468899999999999999999999999999
Q ss_pred cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380 (694)
Q Consensus 337 ~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 380 (694)
++|+.|+|++|.+++++.. +..+++|+.|+|++|+++.+|..+
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~ 320 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ 320 (597)
T ss_dssp SSCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGGH
T ss_pred cCCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCCCCccCccc
Confidence 9999999999999998654 567999999999999999998765
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.3e-26 Score=276.73 Aligned_cols=273 Identities=19% Similarity=0.255 Sum_probs=156.1
Q ss_pred CeeEEEcCCCCCCCCCc--cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCC-ccE
Q psy8879 96 RVSLLDCTLSNVTVLPG--KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN-LDR 172 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~--~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~-L~~ 172 (694)
.|+.|++++|.++.+|. .+..+++|+.|++++|.+..++ .|..+ ++|+.|+|++|.++.+|.. +.++ ++ |++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L-~~L~~L~Ls~N~l~~lp~~-l~~l-~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN-VKLTDLKLDYNQIEEIPED-FCAF-TDQVEG 623 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT-SEESEEECCSSCCSCCCTT-SCEE-CTTCCE
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC-CcceEEECcCCccccchHH-Hhhc-cccCCE
Confidence 55666666666666665 5556666666666666666554 33333 3366666666666655543 4445 45 666
Q ss_pred EEccCCCCCCCCcccccCCCC--ccEEEecCCCCCCCCcccc---C--CCCCCcEEeccCCcccchhhhhhccCcccccc
Q psy8879 173 LDLSHNQLYKLENTSFKGLSS--LNFLDLSYNKLMTLSQDCL---A--PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245 (694)
Q Consensus 173 L~Ls~N~L~~i~~~~f~~L~~--L~~L~Ls~N~l~~i~~~~f---~--~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L 245 (694)
|+|++|.++.++ ..+..++. |+.|++++|++.+..+... . .+++|++|++++|+++...+..+..+++|+.|
T Consensus 624 L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 666666665444 34444332 6666666666655433211 1 23356666666666664333344456666666
Q ss_pred cCCCCcCCCCCCCCCCCC-------ccccceeeccCCccccccccccc--CCcccceecccCCccccccchhhhcccccc
Q psy8879 246 DLSHNLLAGPLGPSTVPR-------LSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316 (694)
Q Consensus 246 ~Ls~N~l~~~i~p~~~~~-------l~~L~~L~Ls~N~L~~i~~~~~~--~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~ 316 (694)
+|++|.+.. +++..+.. +++|+.|+|++|+++.++.. +. .+++|+.|+|++|+++.++. .+..+++|+
T Consensus 703 ~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~ 779 (876)
T 4ecn_A 703 ILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLK 779 (876)
T ss_dssp ECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTCC
T ss_pred ECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCccch-hhhcCCCCC
Confidence 666666662 43333322 23666666766666655433 33 66666667777666666533 455666666
Q ss_pred cccCCC------CccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879 317 HLDLAH------NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380 (694)
Q Consensus 317 ~L~Ls~------N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 380 (694)
.|+|++ |++.+..|..|.++++|+.|+|++|++..+|.... ++|+.|+|++|++..++...
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECGG
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChHH
Confidence 666654 55666666666666667777777776655555422 46666777777666555433
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.4e-26 Score=256.90 Aligned_cols=262 Identities=27% Similarity=0.392 Sum_probs=214.0
Q ss_pred CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCc--------------
Q psy8879 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPT-------------- 160 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~-------------- 160 (694)
..|+.|++++|.+..++. +..+++|++|++++|.++.++. |..+ ++|++|++++|.++.++.
T Consensus 90 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGN 165 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCC-CCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence 477888888888877766 7777788888888887777754 4443 347777777777665542
Q ss_pred -----cccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhh
Q psy8879 161 -----SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAA 235 (694)
Q Consensus 161 -----~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~ 235 (694)
..+.++ ++|++|++++|.++.++ .+..+++|++|++++|.+.++.+ +..+++|++|++++|++++. ..
T Consensus 166 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 238 (466)
T 1o6v_A 166 QVTDLKPLANL-TTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT 238 (466)
T ss_dssp SCCCCGGGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred cccCchhhccC-CCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hh
Confidence 125566 78999999999988875 47889999999999999988876 67789999999999998864 46
Q ss_pred hccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879 236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315 (694)
Q Consensus 236 ~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L 315 (694)
+..+++|++|++++|.+.+.. + +..+++|++|++++|.++++++ +.++++|++|++++|+++.+++ +..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLA-P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCccccch-h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 788899999999999998642 2 7888999999999999998865 7888999999999999988775 7888999
Q ss_pred ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
+.|++++|+++++.+ +..+++|+.|++++|++++++ .+..+++|+.|++++|+++++++
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch
Confidence 999999999998876 678899999999999998874 47889999999999999987765
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-26 Score=240.96 Aligned_cols=229 Identities=27% Similarity=0.402 Sum_probs=171.0
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L 223 (694)
+++.++++++.++.+|... +++|++|+|++|+++.+++..|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3667777777777776532 156777777777777776666777777777777777776666666666666666666
Q ss_pred cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303 (694)
Q Consensus 224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~ 303 (694)
++|+++... +..+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.
T Consensus 93 ~~n~l~~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 93 TDNKLQALP-------------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CSSCCCCCC-------------------------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCcCC-------------------------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 666554332 4445556666777777777777766667777788888888888887
Q ss_pred ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383 (694)
Q Consensus 304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 383 (694)
+++..|..+++|+.|+|++|+++++++..|.++++|+.|+|++|+++++++..+..+++|+.|++++|+|.
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------- 218 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD--------- 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee---------
Confidence 77777888888888888888888888888889999999999999999999988999999999999999999
Q ss_pred CCCCCcc-cccccccccccc---cCCccCccccC
Q psy8879 384 FNTMDLE-LIYSGVWRHSTL---LIPVMLSLCTR 413 (694)
Q Consensus 384 ~NpCdC~-l~~~~~wl~~~~---~~~~~~~~C~~ 413 (694)
|+|. +.|+..|+.... +.......|..
T Consensus 219 ---c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~ 249 (270)
T 2o6q_A 219 ---CTCNGIIYMAKWLKKKADEGLGGVDTAGCEK 249 (270)
T ss_dssp ---CSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS
T ss_pred ---CCCccHHHHHHHHHhhccccccCccccccCC
Confidence 9997 788999986332 22334567753
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.6e-27 Score=260.13 Aligned_cols=258 Identities=28% Similarity=0.439 Sum_probs=205.6
Q ss_pred CCCCCCCCCCCCCCCC-CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCC
Q psy8879 53 PWSCPSIKNDLCACDL-PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGEL 130 (694)
Q Consensus 53 ~~~Cp~~~~~~C~C~~-~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i 130 (694)
...||. .|.|.. ...+.|.. ..+..+|..+. ..++.|++++|+++.++ ..|..+++|++|++++|.+
T Consensus 32 ~~~Cp~----~C~C~~~~~~v~c~~--~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i 100 (440)
T 3zyj_A 32 AQTCPS----VCSCSNQFSKVICVR--KNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100 (440)
T ss_dssp -CCCCS----SSEECTTSCEEECCS--CCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC
T ss_pred cccCCC----CCEeCCCCCEEEeCC--CCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC
Confidence 346887 899974 35688865 34666776553 38999999999998886 6788899999999999999
Q ss_pred CCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecC-CCCCCCCc
Q psy8879 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY-NKLMTLSQ 209 (694)
Q Consensus 131 ~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~-N~l~~i~~ 209 (694)
+.+...+|.++.. |++|+|++|.++.+++..|..+ ++|++|+|++|.++.+++..|.++++|++|++++ |.+..+++
T Consensus 101 ~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 101 RTIEIGAFNGLAN-LNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CEECGGGGTTCSS-CCEEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CccChhhccCCcc-CCEEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 9999999988764 9999999999999999899999 9999999999999999999999999999999998 55777887
Q ss_pred cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289 (694)
Q Consensus 210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~ 289 (694)
..|..+++|++|++++|+++.. | .+..+++|++|++++|.+.+ +.+..|..+++|+.|+|++|+++.+.+..|.+++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred chhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 8899999999999999988743 3 35666677777777777765 3466666777777777777777776666666677
Q ss_pred ccceecccCCccccccchhhhcccccccccCCCCccc
Q psy8879 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326 (694)
Q Consensus 290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~ 326 (694)
+|++|+|++|+++.+++..|..+++|+.|+|++|.+.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777777777777666666666667777777766654
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.1e-26 Score=244.20 Aligned_cols=217 Identities=29% Similarity=0.346 Sum_probs=166.5
Q ss_pred cccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCccc
Q psy8879 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242 (694)
Q Consensus 163 ~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L 242 (694)
+.++ ++|+++++++|.++.+++..+ ++++.|+|++|.++++.+..|..+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l-~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKV-ASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECS-TTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccc-CCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3344 555555555555555553221 3555566666665555555555666666666666665543222 456667
Q ss_pred ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCC
Q psy8879 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322 (694)
Q Consensus 243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~ 322 (694)
++|++++|.+.. + |..+..+++|+.|++++|+++++++..|.++++|++|+|++|+++.+++..|..+++|+.|+|++
T Consensus 80 ~~L~Ls~N~l~~-l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQS-L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCSS-C-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCc-C-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 777777777764 3 55677888899999999999988888899999999999999999999988899999999999999
Q ss_pred CccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccc
Q psy8879 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHS 400 (694)
Q Consensus 323 N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~ 400 (694)
|+++++++..|..+++|+.|+|++|+++.++...+ .+.+|+.|+|++|+|. |+|++.||..|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~------------C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL------------CNCEILYFRRWLQD 222 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC------------CSGGGHHHHHHHHH
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCcc------------CcCccHHHHHHHHh
Confidence 99999988889999999999999999999987755 4679999999999999 99999999999963
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=9.2e-26 Score=252.18 Aligned_cols=254 Identities=22% Similarity=0.289 Sum_probs=172.4
Q ss_pred CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
..|+.|++++|.++.+| +..+++|++|++++|.++.++ |.++ ++|++|++++|.++.++ +..+ ++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l-~~L~~L~L~~N~l~~l~---~~~l-~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPL-TKLTYLNCDTNKLTKLD---VSQN-PLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTC-TTCCEEECCSSCCSCCC---CTTC-TTCCEEE
T ss_pred CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCC-CcCCEEECCCCcCCeec---CCCC-CcCCEEE
Confidence 47777888888877775 667777888888888777764 4443 34888888888877764 5666 7788888
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCC-CCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~ 253 (694)
+++|++++++ ++++++|++|++++|+ +..+ .+..+++|++|++++|++++. + +..+++|+.|++++|.+.
T Consensus 134 l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 134 CARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS
T ss_pred CCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC
Confidence 8888777763 6677788888888874 3333 367778888888888888863 3 777888888888888887
Q ss_pred CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccc-------ccccccCCCCccc
Q psy8879 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS-------TLSHLDLAHNRIV 326 (694)
Q Consensus 254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~-------~L~~L~Ls~N~L~ 326 (694)
+. .+..+++|+.|++++|++++++ +..+++|+.|++++|+++.++...+..++ +|+.|++++|.+.
T Consensus 205 ~~----~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 205 KL----DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp CC----CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred ee----ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 62 3777888888888888888864 67788888999998888887765554443 3445555555433
Q ss_pred cccccchhcccccCeeecCCCCCCCcCh--------hhhCCCCCCCEEEccCCCCCCC
Q psy8879 327 AVSGASLAHLSNLTTLDLSHNFLRALTQ--------DLITPLKSLQELRLDDNDISME 376 (694)
Q Consensus 327 ~i~~~~f~~l~~L~~L~Ls~N~L~~l~~--------~~~~~l~~L~~L~Ls~N~L~~l 376 (694)
+..| +..+++|+.|++++|...+..+ -.+..+++|+.|++++|+++++
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 3222 2344555555555554221110 0134445566666666666554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2e-26 Score=256.63 Aligned_cols=257 Identities=30% Similarity=0.452 Sum_probs=185.1
Q ss_pred CCCCCCCCCCCCCCCC-CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCC
Q psy8879 53 PWSCPSIKNDLCACDL-PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGEL 130 (694)
Q Consensus 53 ~~~Cp~~~~~~C~C~~-~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i 130 (694)
.+.||. .|.|.. ...+.|... .+..+|..+. ..++.|++++|+++.+ +..|..+++|++|++++|.+
T Consensus 43 ~~~Cp~----~C~C~~~~~~v~c~~~--~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i 111 (452)
T 3zyi_A 43 PQNCPS----VCSCSNQFSKVVCTRR--GLSEVPQGIP-----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111 (452)
T ss_dssp -CCCCT----TSEECSSSCEEECCSS--CCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCC----CCEECCCCcEEEECCC--CcCccCCCCC-----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc
Confidence 457887 899974 356888653 4666666553 3899999999999887 56788899999999999999
Q ss_pred CCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecC-CCCCCCCc
Q psy8879 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY-NKLMTLSQ 209 (694)
Q Consensus 131 ~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~-N~l~~i~~ 209 (694)
+.+....|.++.. |++|+|++|.++.+++..|..+ ++|++|+|++|+++.+++..|.++++|++|++++ |.+..+++
T Consensus 112 ~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 112 RQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp CEECTTTTTTCTT-CCEEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CCcChhhccCccc-CCEEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 9999999988765 9999999999999999999999 9999999999999999999999999999999998 56777777
Q ss_pred cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289 (694)
Q Consensus 210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~ 289 (694)
..|..+++|++|++++|++++. | .+..+++|++|++++|.+.+ +.+..|..+++|+.|+|++|+++.+.+..|.+++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 7788888888888888877743 2 34444555555555555543 2244444445555555555555544444444444
Q ss_pred ccceecccCCccccccchhhhcccccccccCCCCcc
Q psy8879 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325 (694)
Q Consensus 290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L 325 (694)
+|++|+|++|+++.+++..|..+++|+.|+|++|.+
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 555555555544444444444444444444444443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1e-26 Score=244.91 Aligned_cols=257 Identities=27% Similarity=0.418 Sum_probs=196.4
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCC
Q psy8879 56 CPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNIS 134 (694)
Q Consensus 56 Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~ 134 (694)
||. .|.|.+ ..+.|... .+..+|..+. ..++.|++++|+++.+|.. +..+++|++|++++|.++.+.
T Consensus 1 CP~----~C~C~~-~~l~c~~~--~l~~ip~~~~-----~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 1 CPS----RCSCSG-TEIRCNSK--GLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp CCT----TCEEET-TEEECCSS--CCSSCCSCCC-----TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CcC----CCeeCC-CEEEcCCC--CcccCCCCCC-----CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 777 899975 46888654 3556665442 3899999999999999876 578899999999999998664
Q ss_pred --cchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCccc
Q psy8879 135 --DGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQDC 211 (694)
Q Consensus 135 --~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~~~ 211 (694)
...+.++ .+|++|++++|.++.++.. +..+ ++|++|++++|.++.+++ ..|.++++|++|++++|.+.+..+..
T Consensus 69 ~~~~~~~~~-~~L~~L~Ls~n~i~~l~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 69 CCSQSDFGT-TSLKYLDLSFNGVITMSSN-FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp EEEHHHHSC-SCCCEEECCSCSEEEEEEE-EETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred Ccccccccc-cccCEEECCCCccccChhh-cCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 3455554 4599999999998887764 7777 899999999998888775 57888888999999988888888888
Q ss_pred cCCCCCCcEEeccCCcccc-hhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcc
Q psy8879 212 LAPLVTLRVLRLQGNRLTV-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290 (694)
Q Consensus 212 f~~L~~L~~L~Ls~N~l~~-~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~ 290 (694)
|..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+ +.+..+..+++|++|++++|.++++++..+.++++
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 8888888888888888875 456677777777777777777765 33566777777777777777777776666666777
Q ss_pred cceecccCCccccccchhhhccc-ccccccCCCCccccc
Q psy8879 291 LTSLSCHHNQIDVLEDHSFRALS-TLSHLDLAHNRIVAV 328 (694)
Q Consensus 291 L~~L~Ls~N~L~~i~~~~f~~l~-~L~~L~Ls~N~L~~i 328 (694)
|++|++++|+++...+..+..++ +|+.|+|++|+++..
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 77777777777766666666663 677777777776653
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.9e-27 Score=247.10 Aligned_cols=214 Identities=24% Similarity=0.314 Sum_probs=119.2
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
|++|+|++|.++.+++..|..+ ++|++|+|++|.++++.+ |..+++|++|++++|+++++++ .++|++|+++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~ 107 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECC
Confidence 5555555555555555455555 555555555555554443 5555555555555555554432 1455555555
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccc-cCCcccceecccCCcccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDV 303 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~-~~L~~L~~L~Ls~N~L~~ 303 (694)
+|++++..+.. +++|++|++++|.+.+ +.+..+..+++|++|++++|.++++.+..+ ..+++|++|++++|.++.
T Consensus 108 ~n~l~~~~~~~---~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNISRVSCSR---GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCSEEEECC---CSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccCCcCccc---cCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 55555433322 3445555555555554 224445555666666666666665554444 245666666666666665
Q ss_pred ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~ 374 (694)
++... .+++|+.|+|++|+++++++. +..+++|+.|+|++|++++++.. +..+++|+.|++++|++.
T Consensus 184 ~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 184 VKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCB
T ss_pred ccccc--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCcc
Confidence 54322 356666666666666666444 55666666666666666665543 555666666666666665
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-27 Score=251.30 Aligned_cols=259 Identities=20% Similarity=0.230 Sum_probs=220.7
Q ss_pred CeeEEEcCCCCCCCCCccc-cCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 96 RVSLLDCTLSNVTVLPGKF-LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~-~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
+++..+++.+.+...+..+ ...++|++|++++|.++.+.+..|.++. +|++|+|++|.++++++ +..+ ++|++|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESL-STLRTLD 86 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTC-TTCCEEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhc-CCCCEEE
Confidence 6777888888886655444 3456899999999999999888887765 49999999999988776 7888 9999999
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
+++|.+++++. .++|++|++++|+++++++. .+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 87 Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 87 LNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CCSSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CcCCccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 99999887653 38999999999999988765 36789999999999998888899999999999999999986
Q ss_pred CCCCCCC-CCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879 255 PLGPSTV-PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333 (694)
Q Consensus 255 ~i~p~~~-~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f 333 (694)
.. +..+ ..+++|++|++++|.+++++.. ..+++|++|++++|+++.+++. |..+++|+.|+|++|++++++ ..+
T Consensus 159 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~ 233 (317)
T 3o53_A 159 VN-FAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KAL 233 (317)
T ss_dssp EE-GGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTC
T ss_pred cc-HHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHh
Confidence 43 4444 4789999999999999998543 3589999999999999998875 889999999999999999874 558
Q ss_pred hcccccCeeecCCCCCC-CcChhhhCCCCCCCEEEccCC
Q psy8879 334 AHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDN 371 (694)
Q Consensus 334 ~~l~~L~~L~Ls~N~L~-~l~~~~~~~l~~L~~L~Ls~N 371 (694)
..+++|+.|+|++|.+. +..+.++..+++|+.+++++|
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 88999999999999998 666777888999999998844
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.4e-27 Score=251.30 Aligned_cols=248 Identities=22% Similarity=0.210 Sum_probs=140.5
Q ss_pred CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcC-------CCCCccEEEccCCCCCC-CCcccc-ccC
Q psy8879 96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIG-------LSSPLQALGLPNNLLSV-VPTSAL-APL 166 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~-------l~~~L~~L~Ls~N~L~~-lp~~~~-~~l 166 (694)
+|+.+++++|.+ .+|..+... |+.|++++|.++.+....+.. ...+|++|++++|.+++ +|...| ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 344455555555 555544432 555555555554322111111 12235555555555553 332221 444
Q ss_pred CCCccEEEccCCCCCCCCcccccCC-----CCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchh--hhhhccC
Q psy8879 167 APNLDRLDLSHNQLYKLENTSFKGL-----SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV--VAALQGL 239 (694)
Q Consensus 167 ~~~L~~L~Ls~N~L~~i~~~~f~~L-----~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~--~~~~~~L 239 (694)
++|++|+|++|+++++ +..+.++ ++|++|++++|++.++++..|..+++|++|++++|++.+.. +..+
T Consensus 121 -~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--- 195 (312)
T 1wwl_A 121 -PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--- 195 (312)
T ss_dssp -CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS---
T ss_pred -CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH---
Confidence 5555555555555555 3344443 55555555555555555555555555555555555544321 1111
Q ss_pred cccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc---cccccccCCcccceecccCCccccccc-hhhhccccc
Q psy8879 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTL 315 (694)
Q Consensus 240 ~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~---i~~~~~~~L~~L~~L~Ls~N~L~~i~~-~~f~~l~~L 315 (694)
.+..+++|++|++++|++++ ++...+.++++|++|++++|+++..++ ..+..+++|
T Consensus 196 --------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 196 --------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp --------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred --------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 12445566666666666663 233344566777777777777776542 445566778
Q ss_pred ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376 (694)
Q Consensus 316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l 376 (694)
+.|+|++|+|+.++... . ++|+.|+|++|++++++. +..+++|+.|++++|+|++.
T Consensus 256 ~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCCccChhhhhc-c--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 88888888887664433 2 778888888888888744 77788888888888888753
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.6e-25 Score=227.77 Aligned_cols=222 Identities=24% Similarity=0.320 Sum_probs=130.1
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++.++..+|..+. ++|++|++++|.++.++...|.++. +|++|++++|.++.+++..|.++ ++|++|+|++|
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCC-cCCCEEECCCC
Confidence 35666667777776553 3567777777777766665565544 37777777777766666666666 67777777777
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccch-hhhhhccCcccccccCCCCcCCCCCC
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSHNLLAGPLG 257 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~~~~~~~L~~L~~L~Ls~N~l~~~i~ 257 (694)
.++.+++..|.++++|++|++++|++.++.+..+..+++|++|++++|++++. .|..+.++++|++|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~---- 162 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---- 162 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC----
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC----
Confidence 76666666666666777777777666666665566666666666666666542 2444444455555555554444
Q ss_pred CCCCCCccccceeeccCCcccccccccccCCcccc----eecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333 (694)
Q Consensus 258 p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~----~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f 333 (694)
++++..+..+++|+ +|++++|.++.+++..+.. .+|+.|++++|+++++++..|
T Consensus 163 ---------------------~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 163 ---------------------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp ---------------------EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT
T ss_pred ---------------------cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh
Confidence 44333333333333 4455555555444443332 245555555555555555555
Q ss_pred hcccccCeeecCCCCCC
Q psy8879 334 AHLSNLTTLDLSHNFLR 350 (694)
Q Consensus 334 ~~l~~L~~L~Ls~N~L~ 350 (694)
..+++|+.|+|++|.+.
T Consensus 221 ~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TTCCSCCEEECCSSCBC
T ss_pred cccccccEEEccCCccc
Confidence 55555555555555554
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5e-27 Score=248.79 Aligned_cols=224 Identities=20% Similarity=0.180 Sum_probs=165.1
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCC-ccccc-------CCCCccEEEecCCCCCCCCcccc--CC
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFK-------GLSSLNFLDLSYNKLMTLSQDCL--AP 214 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~-------~L~~L~~L~Ls~N~l~~i~~~~f--~~ 214 (694)
|++|++++|.+ .+|.. +. ..|++|+|++|.++... +..+. ++++|++|++++|++++..+..+ ..
T Consensus 45 L~~l~l~~n~l-~~p~~-~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQ-FT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp CTTHHHHCCTT-CCCHH-HH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred ceeEeeccccc-ccHHH-HH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 56666666666 55543 22 22666666666654321 11222 56777777777777776555444 67
Q ss_pred CCCCcEEeccCCcccchhhhhhccC-----cccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccc---c-cccc
Q psy8879 215 LVTLRVLRLQGNRLTVSVVAALQGL-----RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV---R-RGAL 285 (694)
Q Consensus 215 L~~L~~L~Ls~N~l~~~~~~~~~~L-----~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i---~-~~~~ 285 (694)
+++|++|++++|++++. |..+..+ ++|++|++++|.+.+ +.+..+..+++|++|++++|++.+. + ...+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 77777777777777765 6666655 788888888888876 4467888899999999999987653 2 1234
Q ss_pred cCCcccceecccCCcccc---ccchhhhcccccccccCCCCccccccc-cchhcccccCeeecCCCCCCCcChhhhCCCC
Q psy8879 286 AGLDKLTSLSCHHNQIDV---LEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361 (694)
Q Consensus 286 ~~L~~L~~L~Ls~N~L~~---i~~~~f~~l~~L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~ 361 (694)
.++++|++|++++|+++. ++...+..+++|+.|++++|++++..+ ..+..+++|+.|+|++|+++.++...+ +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---C
Confidence 889999999999999984 444556788999999999999999764 556778999999999999998887544 7
Q ss_pred CCCEEEccCCCCCCCCc
Q psy8879 362 SLQELRLDDNDISMEPE 378 (694)
Q Consensus 362 ~L~~L~Ls~N~L~~l~~ 378 (694)
+|+.|++++|+|+++|.
T Consensus 275 ~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp EEEEEECCSSCCCSCCC
T ss_pred CceEEECCCCCCCCChh
Confidence 89999999999998865
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.2e-24 Score=249.32 Aligned_cols=268 Identities=26% Similarity=0.244 Sum_probs=215.6
Q ss_pred CCCCC--CCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcC
Q psy8879 63 LCACD--LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIG 140 (694)
Q Consensus 63 ~C~C~--~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~ 140 (694)
.|.|. ....+.|..+ .+..+|..+. ..|+.|++++|+++.+|. .+++|++|++++|.++.++.
T Consensus 34 ~~~c~~~~l~~L~ls~n--~L~~lp~~l~-----~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----- 98 (622)
T 3g06_A 34 MRACLNNGNAVLNVGES--GLTTLPDCLP-----AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----- 98 (622)
T ss_dssp HHHHHHHCCCEEECCSS--CCSCCCSCCC-----TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-----
T ss_pred cccccCCCCcEEEecCC--CcCccChhhC-----CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-----
Confidence 45554 2345666543 3445555443 489999999999999887 46789999999999998876
Q ss_pred CCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcE
Q psy8879 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220 (694)
Q Consensus 141 l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~ 220 (694)
.+.+|++|++++|.++.+|. .+ ++|++|++++|+++.++. .+++|++|++++|++++++. .+++|+.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~----~l-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~ 165 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA----LP-SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCK 165 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC----CC-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred CCCCCCEEECcCCcCCCCCC----CC-CCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCE
Confidence 34569999999999999887 33 789999999999998875 35889999999999988754 3478999
Q ss_pred EeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCc
Q psy8879 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300 (694)
Q Consensus 221 L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~ 300 (694)
|++++|+++. +| ..+++|+.|++++|.+.+ + |.. .++|+.|++++|.++.++. .+++|++|++++|+
T Consensus 166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l-~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L-PTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNR 232 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C-CCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSC
T ss_pred EECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C-CCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCc
Confidence 9999999986 34 456889999999999986 4 332 4789999999999998764 34789999999999
Q ss_pred cccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380 (694)
Q Consensus 301 L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 380 (694)
|+.++ ..+++|+.|+|++|+|+.++. .+++|+.|+|++|+|+.+|. .+..+++|+.|+|++|++++.++..
T Consensus 233 L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 233 LTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred cCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCHHH
Confidence 99887 356899999999999998865 56899999999999998875 4788999999999999998765543
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.1e-24 Score=223.68 Aligned_cols=201 Identities=28% Similarity=0.393 Sum_probs=126.6
Q ss_pred CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879 96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L 175 (694)
..+.++|++++++.+|..+. .++++|++++|.++.++..+|.++. +|++|++++|.++.+++..|.++ ++|++|+|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKEL-KNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSC-TTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCC-CCCCEEEC
Confidence 34568888888888887654 4677777777777777766666554 37777777777777776666666 67777777
Q ss_pred cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP 255 (694)
Q Consensus 176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 255 (694)
++|.++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-
Confidence 7777777666666667777777777777776666666666666666666666665444445555555555555555543
Q ss_pred CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcc
Q psy8879 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301 (694)
Q Consensus 256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L 301 (694)
+++..|..+++|+.|++++|.++++++..|..+++|+.|++++|.+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 3334444455555555555555544444444444444444444443
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.1e-25 Score=234.82 Aligned_cols=236 Identities=23% Similarity=0.216 Sum_probs=134.5
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEE
Q psy8879 118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFL 197 (694)
Q Consensus 118 ~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L 197 (694)
.+++.|++++|.++.++...+ . +.+|++|+|++|.++.+|. .+.++ ++|++|+|++|.++.++ ..|.++++|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~-l~~L~~L~L~~n~l~~lp~-~~~~l-~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-R-LSHLQHMTIDAAGLMELPD-TMQQF-AGLETLTLARNPLRALP-ASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-G-GTTCSEEEEESSCCCCCCS-CGGGG-TTCSEEEEESCCCCCCC-GGGGGCTTCCEE
T ss_pred cceeEEEccCCCchhcChhhh-h-CCCCCEEECCCCCccchhH-HHhcc-CCCCEEECCCCccccCc-HHHhcCcCCCEE
Confidence 445566666666665554322 2 2335666666665555543 34555 55566666655555443 345555555555
Q ss_pred EecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcc
Q psy8879 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277 (694)
Q Consensus 198 ~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L 277 (694)
++++|++.+..|..+.. . ..+..|.++++|++|++++|.+.. + |..+..+++|++|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~~-l-p~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIRS-L-PASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCCC-C-CGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcCc-c-hHhhcCCCCCCEEEccCCCC
Confidence 55555444333332221 0 000112335666666666666652 3 44566666666666666666
Q ss_pred cccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhh
Q psy8879 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357 (694)
Q Consensus 278 ~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~ 357 (694)
+++++ .+.++++|++|++++|++....+..|..+++|+.|+|++|++.+..|..+.++++|+.|+|++|.+.+..|..+
T Consensus 219 ~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 66544 35666666666666666665555566666677777777766666666666677777777777766666555666
Q ss_pred CCCCCCCEEEccCCCCCCC
Q psy8879 358 TPLKSLQELRLDDNDISME 376 (694)
Q Consensus 358 ~~l~~L~~L~Ls~N~L~~l 376 (694)
..+++|+.+++..|.+..+
T Consensus 298 ~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp GGSCTTCEEECCGGGSCC-
T ss_pred hhccCceEEeCCHHHHHHH
Confidence 6677777777766655543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.1e-26 Score=255.07 Aligned_cols=215 Identities=23% Similarity=0.301 Sum_probs=118.2
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L 223 (694)
+|++|+|++|.++.+++..|..+ ++|++|+|++|.++++++ |.++++|++|+|++|.++++++. ++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence 35555555555555555455555 555555555555554443 55555555555555555544322 45555555
Q ss_pred cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccccccc-CCcccceecccCCccc
Q psy8879 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQID 302 (694)
Q Consensus 224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-~L~~L~~L~Ls~N~L~ 302 (694)
++|.+++..+. .+++|+.|++++|.+.+. .+..+..+++|+.|+|++|.++++++..+. .+++|++|+|++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 55555544332 234555555555555542 244455555666666666666555544443 4556666666666665
Q ss_pred cccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 303 ~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~ 374 (694)
.++. +..+++|+.|+|++|+++++++. +..+++|+.|+|++|.+++++.. +..+++|+.|++++|++.
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence 5543 22356666666666666665444 55566666666666666665543 455566666666666665
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.7e-24 Score=231.34 Aligned_cols=228 Identities=18% Similarity=0.221 Sum_probs=153.7
Q ss_pred CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
..++.|++++|+++.+|..+.++++|++|++++|.++.++. .|..+ .+|++|+|++|.++.+|. .+.++ ++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l-~~L~~L~Ls~n~l~~lp~-~l~~l-~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQF-AGLETLTLARNPLRALPA-SIASL-NRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGG-TTCSEEEEESCCCCCCCG-GGGGC-TTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhcc-CCCCEEECCCCccccCcH-HHhcC-cCCCEEE
Confidence 38999999999999999999999999999999999997764 45554 459999999999998876 48888 9999999
Q ss_pred ccCCCCCCCCccccc---------CCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccc
Q psy8879 175 LSHNQLYKLENTSFK---------GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~---------~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L 245 (694)
|++|++.+..+..+. ++++|++|++++|+++.++ ..+..+++|++|++++|++++ +|..+..++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~----- 229 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSA-LGPAIHHLP----- 229 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCC-CCGGGGGCT-----
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCc-CchhhccCC-----
Confidence 999876655544443 3555666666655555443 235555555555555555553 233344444
Q ss_pred cCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcc
Q psy8879 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325 (694)
Q Consensus 246 ~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L 325 (694)
+|++|++++|.+.+..+..+.++++|++|++++|++.+..+..+..+++|+.|+|++|++
T Consensus 230 --------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 230 --------------------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp --------------------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred --------------------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 455555555444444444455555555555555555544444566666666777776666
Q ss_pred ccccccchhcccccCeeecCCCCCCCcC
Q psy8879 326 VAVSGASLAHLSNLTTLDLSHNFLRALT 353 (694)
Q Consensus 326 ~~i~~~~f~~l~~L~~L~Ls~N~L~~l~ 353 (694)
.+..|..+.++++|+.+++..|.+..+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 6666666777777777777666555443
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.7e-24 Score=237.66 Aligned_cols=252 Identities=23% Similarity=0.318 Sum_probs=211.7
Q ss_pred CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
..|+.|++++|.++.+| .+..+++|++|++++|.++.++ |..+ .+|++|++++|.+++++ +.++ ++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l-~~L~~L~Ls~N~l~~~~---~~~l-~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQN-TNLTYLACDSNKLTNLD---VTPL-TKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTC-TTCSEEECCSSCCSCCC---CTTC-TTCCEEE
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccC-CCCCEEECcCCCCceee---cCCC-CcCCEEE
Confidence 48999999999999987 6889999999999999999985 4444 46999999999999985 7788 9999999
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
+++|++++++ ++++++|++|++++|++++++ +..+++|++|++++|+..+.. .+..+++|++|++++|++++
T Consensus 113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 9999999874 889999999999999999973 788999999999999655444 57889999999999999997
Q ss_pred CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334 (694)
Q Consensus 255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~ 334 (694)
+ + +..+++|+.|++++|.++++ .+..+++|++|++++|+++.++ +..+++|+.|++++|+++++++..+.
T Consensus 185 -l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 185 -L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp -C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred -e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 4 3 78899999999999999988 3788999999999999999976 78899999999999999998755444
Q ss_pred ccc-------ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCC
Q psy8879 335 HLS-------NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 375 (694)
Q Consensus 335 ~l~-------~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~ 375 (694)
.+. +|+.|++++|.+.+..+ +..+++|+.|++++|+..+
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 333 34455555554333222 4568999999999997543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.9e-25 Score=247.03 Aligned_cols=244 Identities=21% Similarity=0.236 Sum_probs=211.3
Q ss_pred CCCccccCC----CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCC
Q psy8879 109 VLPGKFLEG----VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE 184 (694)
Q Consensus 109 ~lp~~~~~~----~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~ 184 (694)
.+|..+..+ ++|++|++++|.+..+.+..|.++. +|++|+|++|.++++++ +..+ ++|++|+|++|.|++++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELL 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCCC
Confidence 345444444 3899999999999999988887765 59999999999998776 8888 99999999999998776
Q ss_pred cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCC-C
Q psy8879 185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-R 263 (694)
Q Consensus 185 ~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~-~ 263 (694)
+ .++|++|++++|.++++++. .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +..+. .
T Consensus 97 ~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~ 167 (487)
T 3oja_A 97 V-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAAS 167 (487)
T ss_dssp E-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGG
T ss_pred C-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhh
Confidence 4 38999999999999998775 4588999999999999988999999999999999999999754 55554 7
Q ss_pred ccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeee
Q psy8879 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343 (694)
Q Consensus 264 l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~ 343 (694)
+++|+.|+|++|.++++++ +..+++|++|+|++|.++.+++. |..+++|+.|+|++|.+++++ ..+..+++|+.|+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~ 243 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFD 243 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEE
T ss_pred CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hhhccCCCCCEEE
Confidence 8999999999999999854 34689999999999999999875 889999999999999999974 4588899999999
Q ss_pred cCCCCCC-CcChhhhCCCCCCCEEEcc
Q psy8879 344 LSHNFLR-ALTQDLITPLKSLQELRLD 369 (694)
Q Consensus 344 Ls~N~L~-~l~~~~~~~l~~L~~L~Ls 369 (694)
+++|.+. +..+..+..++.|+.++++
T Consensus 244 l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999998 5556677888888888876
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=2.2e-23 Score=232.68 Aligned_cols=243 Identities=25% Similarity=0.305 Sum_probs=158.6
Q ss_pred CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
..|+.|++++|.++.+| .+..+++|++|++++|.++.++.. ..+|++|++++|.++.+| .+.++ ++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~l~--~~~~l-~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELP--ELQNL-PFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCC--CCTTC-TTCCEEE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCcCc--cccCC-CCCCEEE
Confidence 35666666666666666 466666667777766666665432 124667777777666665 25666 6677777
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
+++|.+++++.. .++|++|++++|.++.++ .+..+++|++|++++|++++ +|. .+++|++|++++|.+.+
T Consensus 202 l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 202 ADNNSLKKLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCSSCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence 777766665431 246667777777666554 26667777777777777664 222 23566777777777665
Q ss_pred CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334 (694)
Q Consensus 255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~ 334 (694)
+ |.. .++|+.|++++|.+++++.. .++|++|++++|+++.++. -.++|+.|++++|++++++..
T Consensus 272 -l-~~~---~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~--- 335 (454)
T 1jl5_A 272 -L-PEL---PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL--- 335 (454)
T ss_dssp -C-CCC---CTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC---
T ss_pred -c-Ccc---cCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc---
Confidence 3 222 25677777777777665321 1567777777777765442 114788888888888886432
Q ss_pred cccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377 (694)
Q Consensus 335 ~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~ 377 (694)
+++|+.|++++|++++++. .+++|+.|++++|+++++|
T Consensus 336 -~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 336 -PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred -CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCC
Confidence 5788889999998888776 3678889999988888744
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.2e-24 Score=219.14 Aligned_cols=196 Identities=26% Similarity=0.404 Sum_probs=133.2
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCC-CCCCCcccccCCCCccEEEecC-CCCCCCCccccCCCCCCcEE
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ-LYKLENTSFKGLSSLNFLDLSY-NKLMTLSQDCLAPLVTLRVL 221 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~-L~~i~~~~f~~L~~L~~L~Ls~-N~l~~i~~~~f~~L~~L~~L 221 (694)
+|++|++++|.++.+++..|.++ ++|++|++++|+ ++.+++..|.++++|++|++++ |+++.+++..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555555555555555555 555555555554 5555555555555555555555 55555554445555555555
Q ss_pred eccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc---eeeccCC-cccccccccccCCcccc-eecc
Q psy8879 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK---VLSIAHN-QFSSVRRGALAGLDKLT-SLSC 296 (694)
Q Consensus 222 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~---~L~Ls~N-~L~~i~~~~~~~L~~L~-~L~L 296 (694)
++++|+ +.+ + |. +..+++|+ .|++++| .++.+++..|.++++|+ +|++
T Consensus 111 ~l~~n~------------------------l~~-l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTG------------------------LKM-F-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEC------------------------CCS-C-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred eCCCCC------------------------Ccc-c-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 555544 443 2 22 44555555 8888888 88888877788888888 8888
Q ss_pred cCCccccccchhhhcccccccccCCCCc-cccccccchhcc-cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCC
Q psy8879 297 HHNQIDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371 (694)
Q Consensus 297 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~-L~~i~~~~f~~l-~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N 371 (694)
++|+++.++...|.. ++|+.|++++|+ ++++++..|.++ ++|+.|++++|+++++++. .+++|+.|+++++
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 888888888777776 788888888884 888888888888 8899999999999888765 4677888888875
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.2e-24 Score=215.40 Aligned_cols=191 Identities=18% Similarity=0.323 Sum_probs=122.1
Q ss_pred CCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCC-CCCCCccccccCCCCccEEEccC-CCCCCCC
Q psy8879 107 VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL-LSVVPTSALAPLAPNLDRLDLSH-NQLYKLE 184 (694)
Q Consensus 107 l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~-L~~lp~~~~~~l~~~L~~L~Ls~-N~L~~i~ 184 (694)
++.+|. +. .+|++|++++|.++.++...|.++. +|++|++++|. ++.+++..|.++ ++|++|++++ |+++.++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEEC
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcC
Confidence 444554 32 2677777777777777777776654 48888888886 888887778887 8888888887 8888888
Q ss_pred cccccCCCCccEEEecCCCCCCCCccccCCCCCCc---EEeccCC-cccchhhhhhccCcccc-cccCCCCcCCCCCCCC
Q psy8879 185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR---VLRLQGN-RLTVSVVAALQGLRSVT-DLDLSHNLLAGPLGPS 259 (694)
Q Consensus 185 ~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~---~L~Ls~N-~l~~~~~~~~~~L~~L~-~L~Ls~N~l~~~i~p~ 259 (694)
+..|.++++|++|++++|++++++. |..+++|+ +|++++| +++...+..|.++++|+ +|++++|.+. .+++.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 7788888888888888888887654 66777776 7777777 66654444455555555 5555555544 23333
Q ss_pred CCCCccccceeeccCCc-ccccccccccCC-cccceecccCCccccccc
Q psy8879 260 TVPRLSSLKVLSIAHNQ-FSSVRRGALAGL-DKLTSLSCHHNQIDVLED 306 (694)
Q Consensus 260 ~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~L-~~L~~L~Ls~N~L~~i~~ 306 (694)
.+.. ++|+.|++++|+ ++.+++..|.++ ++|++|++++|+++.++.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 3333 445555555552 444444444444 444444444444444443
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=7.2e-24 Score=217.29 Aligned_cols=170 Identities=29% Similarity=0.417 Sum_probs=132.0
Q ss_pred CCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecc
Q psy8879 217 TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296 (694)
Q Consensus 217 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~L 296 (694)
+++.|++++|++++..+..|.++++|++|++++|.+.+ +.+..+..+++|++|+|++|.++++++..|.++++|++|+|
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 44444444444444444444445555555555555544 33555666777777777777777777777777888888888
Q ss_pred cCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376 (694)
Q Consensus 297 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l 376 (694)
++|+|+.+++..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++++++..+..+++|+.|++++|+|+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 192 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD-- 192 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee--
Confidence 888888888877888889999999999999988888999999999999999999999988999999999999999999
Q ss_pred CcccccCCCCCC-ccccccccccc
Q psy8879 377 PECIYVGFNTMD-LELIYSGVWRH 399 (694)
Q Consensus 377 ~~~~f~~~NpCd-C~l~~~~~wl~ 399 (694)
|+ |++.|+..|+.
T Consensus 193 ----------c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 193 ----------CSRCEILYLSQWIR 206 (251)
T ss_dssp ----------TTSTTHHHHHHHHH
T ss_pred ----------CCccccHHHHHHHH
Confidence 99 99999999996
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.1e-22 Score=227.04 Aligned_cols=246 Identities=26% Similarity=0.321 Sum_probs=144.2
Q ss_pred CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879 96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L 175 (694)
.|+.|++++|.++.+|..+ .+|++|++++|.++.++. .+.+|++|++++|.++++| .+.++ ++|++|++
T Consensus 92 ~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~lp--~~~~l-~~L~~L~l 160 (454)
T 1jl5_A 92 HLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEKLP--ELQNS-SFLKIIDV 160 (454)
T ss_dssp TCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSSCC--CCTTC-TTCCEEEC
T ss_pred CCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCCCc--ccCCC-CCCCEEEC
Confidence 6667777777776666432 456666666666665542 1234666666666666655 25666 66666666
Q ss_pred cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP 255 (694)
Q Consensus 176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 255 (694)
++|++++++. ..++|++|++++|++++++ .|..+++|++|++++|++++ +|.. .++|++|++++|.+.+
T Consensus 161 ~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~- 229 (454)
T 1jl5_A 161 DNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEE- 229 (454)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSS-
T ss_pred CCCcCcccCC----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCc-
Confidence 6666665542 1235666666666666643 25666666666666666553 2221 1355555555555552
Q ss_pred CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchh---------------h-hccccccccc
Q psy8879 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS---------------F-RALSTLSHLD 319 (694)
Q Consensus 256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~---------------f-~~l~~L~~L~ 319 (694)
+ | .+..+++|++|++++|++++++. .+++|++|++++|+++.++... + .-.++|+.|+
T Consensus 230 l-p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 230 L-P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp C-C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred c-c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 3 2 25555555555555555555432 1244444555544444433210 0 0014555556
Q ss_pred CCCCccccccccchhcc-cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 320 LAHNRIVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 320 Ls~N~L~~i~~~~f~~l-~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
+++|+++++. .+ ++|+.|++++|++++++.. +++|+.|++++|+++.+|.
T Consensus 304 l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 304 ASSNEIRSLC-----DLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CCSSCCSEEC-----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC
T ss_pred CcCCcCCccc-----CCcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc
Confidence 6666555542 22 5899999999999987653 6899999999999999887
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=7.8e-24 Score=244.73 Aligned_cols=226 Identities=28% Similarity=0.258 Sum_probs=195.2
Q ss_pred CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
.+|+.|++++|.++.+|. .+++|++|++++|.++.++. .+.+|+.|++++|.++.+|.. + ++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~----l-~~L~~L~ 147 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL----P-PGLQELS 147 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC----C-TTCCEEE
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC----C-CCCCEEE
Confidence 489999999999999987 66899999999999999876 346799999999999999873 3 8999999
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
|++|++++++. .+++|+.|++++|.++.++ ..+++|+.|++++|++++ +|. .+++|+.|++++|.+..
T Consensus 148 Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 148 VSDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS
T ss_pred CcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc
Confidence 99999998864 4578999999999999987 456899999999999986 333 34789999999999985
Q ss_pred CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334 (694)
Q Consensus 255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~ 334 (694)
+ +. .+++|+.|++++|.+++++ ..+++|++|+|++|+|+.++. .+++|+.|+|++|+|+.+ |..+.
T Consensus 216 -l-~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~ 281 (622)
T 3g06_A 216 -L-PA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLI 281 (622)
T ss_dssp -C-CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGG
T ss_pred -c-CC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHh
Confidence 4 33 2478999999999999976 456899999999999998886 568999999999999987 56699
Q ss_pred cccccCeeecCCCCCCCcChhhhCC
Q psy8879 335 HLSNLTTLDLSHNFLRALTQDLITP 359 (694)
Q Consensus 335 ~l~~L~~L~Ls~N~L~~l~~~~~~~ 359 (694)
++++|+.|+|++|.+++..+..+..
T Consensus 282 ~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp GSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred hccccCEEEecCCCCCCcCHHHHHh
Confidence 9999999999999999877765543
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=2.5e-23 Score=224.07 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=164.7
Q ss_pred EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCC-CCCccccccCCCCccE-EEccC
Q psy8879 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDR-LDLSH 177 (694)
Q Consensus 100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~-~lp~~~~~~l~~~L~~-L~Ls~ 177 (694)
++|++++++.+|..+. .++++|+|++|+|+.|+.++|.++.. |++|+|++|.+. .++..+|.++ ++|++ +.+++
T Consensus 14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~ 89 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKA 89 (350)
T ss_dssp EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEE
T ss_pred EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcc-hhhhhhhcccC
Confidence 5566777888887663 46777777777777777777766554 777777777753 3666666666 55543 55556
Q ss_pred CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccC-CcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG-NRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256 (694)
Q Consensus 178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i 256 (694)
|+++.+++..|.++++|++|++++|++..+++..+....++..|++.+ +++.. +
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-------------------------l 144 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-------------------------I 144 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-------------------------E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-------------------------c
Confidence 677777666777777777777777777766665555555555565543 23332 3
Q ss_pred CCCCCCCcc-ccceeeccCCcccccccccccCCcccceeccc-CCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879 257 GPSTVPRLS-SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334 (694)
Q Consensus 257 ~p~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls-~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~ 334 (694)
++..|..+. .++.|+|++|+++.+++..|. ..+|++|++. +|.++.++..+|.++++|+.|+|++|+|+.+++..|.
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred cccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 233444443 577888888888888777664 4678888886 4788888888899999999999999999998877766
Q ss_pred cccccCeeecCCCCCCCcChhhhCCCCCCCEEEccC
Q psy8879 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370 (694)
Q Consensus 335 ~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~ 370 (694)
++++|+.+++ +.++.+|+ +..+++|+.+++.+
T Consensus 224 ~L~~L~~l~~--~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARST--YNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTC--TTCCCCCC--TTTCCSCCEEECSC
T ss_pred cchHhhhccC--CCcCcCCC--chhCcChhhCcCCC
Confidence 6665555443 45777775 77899999999874
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.5e-23 Score=225.73 Aligned_cols=223 Identities=19% Similarity=0.269 Sum_probs=148.7
Q ss_pred EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC-CCccccCCCCCCcE-Eecc
Q psy8879 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT-LSQDCLAPLVTLRV-LRLQ 224 (694)
Q Consensus 147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~-i~~~~f~~L~~L~~-L~Ls 224 (694)
+++.++++++++|... ++++++|+|++|+|+.+++.+|.++++|++|+|++|++.+ +++++|.+++++++ +.+.
T Consensus 13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3444444555554421 1345555555555555555555555555555555555432 34444555555443 3344
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccC-CcccccccccccCCc-ccceecccCCccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH-NQFSSVRRGALAGLD-KLTSLSCHHNQID 302 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~-N~L~~i~~~~~~~L~-~L~~L~Ls~N~L~ 302 (694)
.|+++...+..|.++++|++|++++|.+.+ +++..+....++..|++.+ +.+..+++..|.++. .++.|+|++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 455555555555555556666666665554 3344455566778888855 688889888888876 6899999999999
Q ss_pred cccchhhhcccccccccCC-CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccC-CCCCCCCc
Q psy8879 303 VLEDHSFRALSTLSHLDLA-HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD-NDISMEPE 378 (694)
Q Consensus 303 ~i~~~~f~~l~~L~~L~Ls-~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~-N~L~~l~~ 378 (694)
.++...|.. .+|+.|+++ +|.++.+++..|.++++|+.|||++|+|+.+++..+. +|+.|.+.+ +.++.+|.
T Consensus 168 ~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC
T ss_pred CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC
Confidence 999888764 679999997 5889999999999999999999999999999987655 566666543 46777775
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=8.5e-25 Score=242.75 Aligned_cols=280 Identities=21% Similarity=0.151 Sum_probs=175.6
Q ss_pred CeeEEEcCCCCCC-----CCCccccCCCCccEEEccCCCCCCCCcchhcC----CCCCccEEEccCCCCCCCC----ccc
Q psy8879 96 RVSLLDCTLSNVT-----VLPGKFLEGVTLHGLVISSGELKNISDGAFIG----LSSPLQALGLPNNLLSVVP----TSA 162 (694)
Q Consensus 96 ~L~~Ldls~n~l~-----~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~----l~~~L~~L~Ls~N~L~~lp----~~~ 162 (694)
+|+.|++++|+++ .++..+..+++|++|++++|.+.......+.. ...+|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4677777777765 34566666677777777777665433332221 1224777777777766533 233
Q ss_pred cccCCCCccEEEccCCCCCCCCccccc-----CCCCccEEEecCCCCCCCC----ccccCCCCCCcEEeccCCcccchh-
Q psy8879 163 LAPLAPNLDRLDLSHNQLYKLENTSFK-----GLSSLNFLDLSYNKLMTLS----QDCLAPLVTLRVLRLQGNRLTVSV- 232 (694)
Q Consensus 163 ~~~l~~~L~~L~Ls~N~L~~i~~~~f~-----~L~~L~~L~Ls~N~l~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~- 232 (694)
+..+ ++|++|++++|.++......+. ..++|++|++++|.++... +..+..+++|++|++++|+++...
T Consensus 166 l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 4455 6777777777776554333332 2457777777777776642 344556677777777777776432
Q ss_pred ----hhhhccCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCccccccccccc-----CCcccceecccCC
Q psy8879 233 ----VAALQGLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-----GLDKLTSLSCHHN 299 (694)
Q Consensus 233 ----~~~~~~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-----~L~~L~~L~Ls~N 299 (694)
+..+..+++|++|++++|.+++. + +..+..+++|++|++++|.+++.....+. ..++|++|++++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 22233467777777777776641 1 33345567777788877777654333222 2257788888888
Q ss_pred cccccc----chhhhcccccccccCCCCccccccccchhc-----ccccCeeecCCCCCCC----cChhhhCCCCCCCEE
Q psy8879 300 QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGASLAH-----LSNLTTLDLSHNFLRA----LTQDLITPLKSLQEL 366 (694)
Q Consensus 300 ~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~-----l~~L~~L~Ls~N~L~~----l~~~~~~~l~~L~~L 366 (694)
.++... +..+..+++|+.|++++|++++..+..+.. .++|+.|+|++|++++ ..+..+..+++|++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 776553 234556678888888888887765554443 5688888888888874 334456667888888
Q ss_pred EccCCCCCCCC
Q psy8879 367 RLDDNDISMEP 377 (694)
Q Consensus 367 ~Ls~N~L~~l~ 377 (694)
++++|+++...
T Consensus 404 ~l~~N~i~~~~ 414 (461)
T 1z7x_W 404 DLSNNCLGDAG 414 (461)
T ss_dssp ECCSSSCCHHH
T ss_pred ECCCCCCCHHH
Confidence 88888877543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.9e-23 Score=212.19 Aligned_cols=174 Identities=28% Similarity=0.392 Sum_probs=75.4
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
|+.|++++|.++.++. +..+ ++|++|++++|.+++++ .+.++++|++|++++|.++++++..|..+++|++|+++
T Consensus 43 L~~L~l~~~~i~~~~~--l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQG--IQYL-PNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp CCEEECTTSCCCCCTT--GGGC-TTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred eeeeeeCCCCcccccc--cccC-CCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 4444444444444332 3334 44444444444444432 34444444444444444444444444444444444444
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i 304 (694)
+|++++..+..|..+++|++|++++|.+.+ +++..+..+++|+.|++++|.++++++..|.++++|++|++++|+++.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 444443333334444444444444444432 2233334444444444444444444433334444444444444444444
Q ss_pred cchhhhcccccccccCCCCc
Q psy8879 305 EDHSFRALSTLSHLDLAHNR 324 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~ 324 (694)
++..|..+++|+.|++++|.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHHhCCcCCCEEEccCCC
Confidence 43333444444444444443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.6e-22 Score=212.39 Aligned_cols=197 Identities=25% Similarity=0.265 Sum_probs=110.5
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
++++++++|.++.+|.... +++++|+|++|.++.+.+..|.++++|++|+|++|.++++++. ..+++|++|+++
T Consensus 12 l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred ccEEECCCCCCCcCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 4555555555555444211 3455555555555555444555555555555555555544332 445555555555
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i 304 (694)
+|+++ .+|..+..+++|++|++++|++++ +++..|..+++|++|+|++|+++++++..|..+++|++|+|++|+|+.+
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 55554 334445555555555555555554 3345566666666666666666666665566666666666666666666
Q ss_pred cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCC
Q psy8879 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~ 350 (694)
++..|..+++|+.|+|++|+++.++.. +..+.+|+.|+|++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCcc
Confidence 666666666666666666666655433 334456666677666654
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=2.5e-24 Score=239.00 Aligned_cols=277 Identities=22% Similarity=0.232 Sum_probs=145.0
Q ss_pred CeeEEEcCCCCCC-----CCCccccCCCCccEEEccCCCCCCCCcchhcCCCC----CccEEEccCCCCCCCC----ccc
Q psy8879 96 RVSLLDCTLSNVT-----VLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSS----PLQALGLPNNLLSVVP----TSA 162 (694)
Q Consensus 96 ~L~~Ldls~n~l~-----~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~----~L~~L~Ls~N~L~~lp----~~~ 162 (694)
.|+.|++++|+++ .++..+..+++|++|++++|.+.......+..... +|++|++++|.++... +..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 5666666666665 34555566666777777666665543333333222 4667777776666321 334
Q ss_pred cccCCCCccEEEccCCCCCCCCccc-----ccCCCCccEEEecCCCCCCCC----ccccCCCCCCcEEeccCCcccchhh
Q psy8879 163 LAPLAPNLDRLDLSHNQLYKLENTS-----FKGLSSLNFLDLSYNKLMTLS----QDCLAPLVTLRVLRLQGNRLTVSVV 233 (694)
Q Consensus 163 ~~~l~~~L~~L~Ls~N~L~~i~~~~-----f~~L~~L~~L~Ls~N~l~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~~ 233 (694)
+..+ ++|++|+|++|.++...... +...++|++|++++|+++... +..+..+++|++|++++|.+....+
T Consensus 109 l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 109 LRTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp TTSC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HccC-CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 5555 66667777666665432222 122445666666666666543 2334455666666666666654433
Q ss_pred hhhc-----cCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCcccccc-----cccccCCcccceecccCC
Q psy8879 234 AALQ-----GLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVR-----RGALAGLDKLTSLSCHHN 299 (694)
Q Consensus 234 ~~~~-----~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~-----~~~~~~L~~L~~L~Ls~N 299 (694)
..+. ..++|++|++++|.+.+. + +..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 3332 234666666666665531 1 223344556666666666555432 222224556666666666
Q ss_pred cccccc----chhhhcccccccccCCCCccccccccchhcc-----cccCeeecCCCCCCCcC----hhhhCCCCCCCEE
Q psy8879 300 QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNFLRALT----QDLITPLKSLQEL 366 (694)
Q Consensus 300 ~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l-----~~L~~L~Ls~N~L~~l~----~~~~~~l~~L~~L 366 (694)
.++... +..+..+++|+.|++++|.+++..+..+... ++|+.|+|++|.+++.. +..+..+++|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 555421 2234445566666666665554433333222 45555555555555432 2223344555555
Q ss_pred EccCCCCC
Q psy8879 367 RLDDNDIS 374 (694)
Q Consensus 367 ~Ls~N~L~ 374 (694)
++++|+++
T Consensus 347 ~Ls~n~i~ 354 (461)
T 1z7x_W 347 QISNNRLE 354 (461)
T ss_dssp ECCSSBCH
T ss_pred EccCCccc
Confidence 55555554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9e-23 Score=211.79 Aligned_cols=227 Identities=27% Similarity=0.293 Sum_probs=185.3
Q ss_pred eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879 97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls 176 (694)
+..+++..+.+.... ....+.+|+.|++++|.++.++. +..+ ++|++|++++|.++.++ .+..+ ++|++|+|+
T Consensus 21 l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--l~~l-~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYL-PNVRYLALGGNKLHDIS--ALKEL-TNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTT--GGGC-TTCCEEECTTSCCCCCG--GGTTC-TTCCEEECT
T ss_pred HHHHHhcCccccccc-ccccccceeeeeeCCCCcccccc--cccC-CCCcEEECCCCCCCCch--hhcCC-CCCCEEECC
Confidence 334455555554442 34456788899999988887753 4443 45999999999998875 47788 899999999
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i 256 (694)
+|.++++++..|.++++|++|++++|+++++++..|..+++|++|++++|++++..+..|..+++|++|++++|++.+ +
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-L 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-c
Confidence 999999888888899999999999999999988888899999999999999988777788889999999999999986 5
Q ss_pred CCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 336 (694)
Q Consensus 257 ~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l 336 (694)
++..+..+++|+.|++++|.++++++..+..+++|++|++++|.+.. .+++|+.|+++.|.+++..|..++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 56778889999999999999999988888899999999999998753 35678888888898888877776655
Q ss_pred cc
Q psy8879 337 SN 338 (694)
Q Consensus 337 ~~ 338 (694)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.1e-22 Score=213.08 Aligned_cols=192 Identities=29% Similarity=0.400 Sum_probs=113.6
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
|++|++++|.++.++. +..+ ++|++|+|++|.++.+++ +.++++|++|++++|++++++ .+..+++|++|+++
T Consensus 43 L~~L~l~~~~i~~l~~--~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEG--VQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred cCEEEeeCCCccCchh--hhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 5556666655555542 4445 555556665555555544 555555555555555555542 24555555555555
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i 304 (694)
+|++++.. .+..+++|++|++++|.++++++ +.++++|++|++++|.++.+
T Consensus 116 ~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 116 STQITDVT---------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp TSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCch---------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 55544321 14445555555555555555543 55566666666666666655
Q ss_pred cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~ 378 (694)
++ +..+++|+.|++++|+++++++ +..+++|+.|+|++|+++++++ +..+++|+.|++++|+++..|.
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 54 5666666777777776666654 5666777777777777776664 6667777777777777764443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=7.9e-23 Score=216.15 Aligned_cols=230 Identities=18% Similarity=0.135 Sum_probs=133.4
Q ss_pred CCccEEEccCCCCCCCCcc---hhcCCCCCccEEEccCCCCCCCCcccc--ccCCCCccEEEccCCCCCCCCc----ccc
Q psy8879 118 VTLHGLVISSGELKNISDG---AFIGLSSPLQALGLPNNLLSVVPTSAL--APLAPNLDRLDLSHNQLYKLEN----TSF 188 (694)
Q Consensus 118 ~~L~~L~Ls~n~i~~i~~~---~F~~l~~~L~~L~Ls~N~L~~lp~~~~--~~l~~~L~~L~Ls~N~L~~i~~----~~f 188 (694)
..++.+.+.++.+...... .+... .+|++|++++|.+++..+..+ ..+ ++|++|+|++|.+++..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHh
Confidence 4466666666655421111 01112 236666666666665544444 555 666666666666654322 233
Q ss_pred cCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879 189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268 (694)
Q Consensus 189 ~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~ 268 (694)
..+++|++|++++|++.++++..|..+++|++|++++|++.+... ...+..+..+++|+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~ 200 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQ 200 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCC
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh---------------------hhHHHhhhcCCCCC
Confidence 455666666666666666666666666666666666666543210 00011223455556
Q ss_pred eeeccCCcccccccc---cccCCcccceecccCCccccccchhhhcc---cccccccCCCCccccccccchhcccccCee
Q psy8879 269 VLSIAHNQFSSVRRG---ALAGLDKLTSLSCHHNQIDVLEDHSFRAL---STLSHLDLAHNRIVAVSGASLAHLSNLTTL 342 (694)
Q Consensus 269 ~L~Ls~N~L~~i~~~---~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l---~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L 342 (694)
+|+|++|+++.++.. .+.++++|++|+|++|+++...+..+..+ ++|++|+|++|+++.++... . ++|+.|
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L 277 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVL 277 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCE
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEE
Confidence 666666665543321 23556677777777777766644344444 57777778777777664433 2 688888
Q ss_pred ecCCCCCCCcChhhhCCCCCCCEEEccCCCCCC
Q psy8879 343 DLSHNFLRALTQDLITPLKSLQELRLDDNDISM 375 (694)
Q Consensus 343 ~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~ 375 (694)
+|++|++++++. +..+++|+.|++++|+|+.
T Consensus 278 ~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 888888887754 5677888888888888863
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=2.1e-22 Score=202.83 Aligned_cols=165 Identities=25% Similarity=0.388 Sum_probs=135.9
Q ss_pred ccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccC
Q psy8879 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 320 (694)
Q Consensus 241 ~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~L 320 (694)
+|+.|++++|.+.+ +++..|..+++|+.|+|++|+++.+.+..|.++++|++|+|++|.|+.+++..|.++++|+.|+|
T Consensus 33 ~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45555555555553 33556777778888888888888887778888888888888888888888888888999999999
Q ss_pred CCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccc
Q psy8879 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHS 400 (694)
Q Consensus 321 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~ 400 (694)
++|+|+++.+..|..+++|+.|+|++|+++++++..+..+++|+.|+|++|+|. |||++.|+..|+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------------c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI------------CDCHLKWLADYLHT 179 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE------------CSGGGHHHHHHHHH
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC------------CCCccHHHHHHHHh
Confidence 999999998899999999999999999999999999999999999999999999 99999999999874
Q ss_pred cccCCccCccccCCcccce
Q psy8879 401 TLLIPVMLSLCTRSSVVTR 419 (694)
Q Consensus 401 ~~~~~~~~~~C~~~~~~~~ 419 (694)
.. .....+.|..|...++
T Consensus 180 ~~-~~~~~~~C~~P~~l~g 197 (220)
T 2v9t_B 180 NP-IETSGARCTSPRRLAN 197 (220)
T ss_dssp CC-CBCSCCBEEESGGGTT
T ss_pred CC-CCccCCCcCCchHHcC
Confidence 33 2335678887655443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.8e-21 Score=205.94 Aligned_cols=208 Identities=28% Similarity=0.350 Sum_probs=147.0
Q ss_pred cCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCC
Q psy8879 102 CTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY 181 (694)
Q Consensus 102 ls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~ 181 (694)
+..+.+..+. ....+++|++|++++|.++.++ .|..+ ++|++|++++|.++.+++ +..+ ++|++|+|++|.++
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLK 98 (308)
T ss_dssp TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCS
T ss_pred hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCC
Confidence 3444444321 2345678999999999999986 35554 469999999999999987 8888 99999999999999
Q ss_pred CCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCC
Q psy8879 182 KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261 (694)
Q Consensus 182 ~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~ 261 (694)
.++ .+.++++|++|++++|+++++++ +..+++|++|++++|++++..+ +..+++|++|++++|.+.+ +++ +
T Consensus 99 ~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l 169 (308)
T 1h6u_A 99 NVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--L 169 (308)
T ss_dssp CCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--G
T ss_pred Cch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--h
Confidence 885 58999999999999999999864 8999999999999999886443 6666666666666666654 211 5
Q ss_pred CCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCe
Q psy8879 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 341 (694)
Q Consensus 262 ~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 341 (694)
..+++|+.|++++|.++++++ +..+++|+.|++++|+++++.+ +..+++|+.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 221 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--------------------------LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCcChh--------------------------hcCCCCCCEEEccCCccCcccc--ccCCCCCCE
Confidence 555555555555555554432 3444555555555555555432 445555555
Q ss_pred eecCCCCCCCcC
Q psy8879 342 LDLSHNFLRALT 353 (694)
Q Consensus 342 L~Ls~N~L~~l~ 353 (694)
|+|++|.+++.+
T Consensus 222 L~l~~N~i~~~~ 233 (308)
T 1h6u_A 222 VTLTNQTITNQP 233 (308)
T ss_dssp EEEEEEEEECCC
T ss_pred EEccCCeeecCC
Confidence 555555555544
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.8e-23 Score=223.49 Aligned_cols=256 Identities=21% Similarity=0.241 Sum_probs=129.9
Q ss_pred EEcCCCCCCCCCccccCCCC-ccEEEccCCCCCCCCc----chhcCCCCCccEEEccCCCCCCCCccccccC----CCCc
Q psy8879 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISD----GAFIGLSSPLQALGLPNNLLSVVPTSALAPL----APNL 170 (694)
Q Consensus 100 Ldls~n~l~~lp~~~~~~~~-L~~L~Ls~n~i~~i~~----~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l----~~~L 170 (694)
++++.|+++...+.+...+. |++|++++|.++.++. .+|.++..+|++|+|++|.++......+..+ +++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44555555543333333332 5555555555555544 3344333235555555555544443333321 1344
Q ss_pred cEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCC-CCCcEEeccCCcccchhhhhhc----c-Cccccc
Q psy8879 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL-VTLRVLRLQGNRLTVSVVAALQ----G-LRSVTD 244 (694)
Q Consensus 171 ~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~~~~~~----~-L~~L~~ 244 (694)
++|+|++|.++...+..+.. .+..+ ++|++|++++|++++..+..+. . .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 44444444444433322111 12222 4455555555554443332222 2 134555
Q ss_pred ccCCCCcCCCCCC---CCCCCCcc-ccceeeccCCccccccccc----ccCC-cccceecccCCccccccch----hhhc
Q psy8879 245 LDLSHNLLAGPLG---PSTVPRLS-SLKVLSIAHNQFSSVRRGA----LAGL-DKLTSLSCHHNQIDVLEDH----SFRA 311 (694)
Q Consensus 245 L~Ls~N~l~~~i~---p~~~~~l~-~L~~L~Ls~N~L~~i~~~~----~~~L-~~L~~L~Ls~N~L~~i~~~----~f~~ 311 (694)
|++++|.+.+... +..+..++ +|++|+|++|++++..+.. +..+ ++|++|+|++|.|+..... .+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 5555555442100 01112222 5666666666666554432 2333 4777777777777653222 3333
Q ss_pred -ccccccccCCCCcccccccc----chhcccccCeeecCCCCCCCcChh-------hhCCCCCCCEEEccCCCCCC
Q psy8879 312 -LSTLSHLDLAHNRIVAVSGA----SLAHLSNLTTLDLSHNFLRALTQD-------LITPLKSLQELRLDDNDISM 375 (694)
Q Consensus 312 -l~~L~~L~Ls~N~L~~i~~~----~f~~l~~L~~L~Ls~N~L~~l~~~-------~~~~l~~L~~L~Ls~N~L~~ 375 (694)
.++|+.|+|++|++++.... .+..+++|+.|+|++|.+.++.+. .+..+++|+.||+++|++..
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 34788888888877776553 335567788888888886665543 45567778888888888763
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=199.00 Aligned_cols=164 Identities=21% Similarity=0.371 Sum_probs=136.9
Q ss_pred cccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321 (694)
Q Consensus 242 L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls 321 (694)
+++|++++|.+.+..++..|..+++|+.|+|++|.++++++..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 34555555555543234557778888888888888888888888899999999999999999998889999999999999
Q ss_pred CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccc
Q psy8879 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHST 401 (694)
Q Consensus 322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~ 401 (694)
+|+|+++.+..|.++++|+.|+|++|+++++++..|..+++|+.|++++|+|. |+|.+.|+..|+...
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------c~c~l~~l~~~~~~~ 181 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN------------CNCYLAWLGEWLRKK 181 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE------------CSGGGHHHHHHHHHS
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc------------CCCchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 999999999999744
Q ss_pred ccCCccCccccCCcccc
Q psy8879 402 LLIPVMLSLCTRSSVVT 418 (694)
Q Consensus 402 ~~~~~~~~~C~~~~~~~ 418 (694)
.+. .....|..|...+
T Consensus 182 ~~~-~~~~~C~~P~~l~ 197 (220)
T 2v70_A 182 RIV-TGNPRCQKPYFLK 197 (220)
T ss_dssp CCB-CCCCEEEESGGGT
T ss_pred Ccc-ccCCccCCChHHC
Confidence 322 3456787765433
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=209.87 Aligned_cols=224 Identities=21% Similarity=0.245 Sum_probs=158.2
Q ss_pred CeeEEEcCCCCCCCC--Cc--cccCCCCccEEEccCCCCCCCCcchhc-CCCCCccEEEccCCCCCCCCc----cccccC
Q psy8879 96 RVSLLDCTLSNVTVL--PG--KFLEGVTLHGLVISSGELKNISDGAFI-GLSSPLQALGLPNNLLSVVPT----SALAPL 166 (694)
Q Consensus 96 ~L~~Ldls~n~l~~l--p~--~~~~~~~L~~L~Ls~n~i~~i~~~~F~-~l~~~L~~L~Ls~N~L~~lp~----~~~~~l 166 (694)
.++.+.+.+..++.- .. .+...++|++|++++|.+....+..|. +...+|++|+|++|.++...+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 567788887776421 11 122346699999999999987776662 444569999999999987433 334456
Q ss_pred CCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC---CCc-cccCCCCCCcEEeccCCcccchhh--h-hhccC
Q psy8879 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT---LSQ-DCLAPLVTLRVLRLQGNRLTVSVV--A-ALQGL 239 (694)
Q Consensus 167 ~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~---i~~-~~f~~L~~L~~L~Ls~N~l~~~~~--~-~~~~L 239 (694)
++|++|+|++|.++.+++..|.++++|++|+|++|++.+ +.+ ..+..+++|++|++++|+++.... . .+..+
T Consensus 145 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 -PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp -SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred -cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 899999999999999999999999999999999999865 322 234678999999999999974322 2 35778
Q ss_pred cccccccCCCCcCCCCCCCCCCCCc---cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccc
Q psy8879 240 RSVTDLDLSHNLLAGPLGPSTVPRL---SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316 (694)
Q Consensus 240 ~~L~~L~Ls~N~l~~~i~p~~~~~l---~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~ 316 (694)
++|++|++++|.+.+.. |..+..+ ++|++|+|++|+++.++... . ++|++|+|++|+|+.++. +..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAPQ--PDELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred CCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCch--hhhCCCcc
Confidence 89999999999988743 4445444 57777777777777664432 1 456666666666655432 34455555
Q ss_pred cccCCCCccc
Q psy8879 317 HLDLAHNRIV 326 (694)
Q Consensus 317 ~L~Ls~N~L~ 326 (694)
.|+|++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 5555555544
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.1e-21 Score=194.94 Aligned_cols=178 Identities=29% Similarity=0.397 Sum_probs=112.6
Q ss_pred CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879 96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L 175 (694)
..+.++|++++++.+|..+. .+++.|++++|.+..+....|.++. +|++|+|++|.++.+++..|..+ ++|++|+|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDL-TELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTC-TTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccC-CcCCEEEC
Confidence 34568888888888887664 4677777777777777666665554 37777777777776666666666 66777777
Q ss_pred cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP 255 (694)
Q Consensus 176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 255 (694)
++|+++.+++..|.++++|++|+|++|+++++++..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS- 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-
Confidence 7777766666666666666666666666666666666666666666666666665444445555555555555555543
Q ss_pred CCCCCCCCccccceeeccCCccc
Q psy8879 256 LGPSTVPRLSSLKVLSIAHNQFS 278 (694)
Q Consensus 256 i~p~~~~~l~~L~~L~Ls~N~L~ 278 (694)
+++..+..+++|+.|++++|.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHHhCCCCCCEEEeeCCcee
Confidence 22334444455555555555443
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.2e-22 Score=219.69 Aligned_cols=234 Identities=23% Similarity=0.277 Sum_probs=167.3
Q ss_pred CeeEEEcCCCCCCCCC-----ccccCCC-CccEEEccCCCCCCCCcchhcCC----CCCccEEEccCCCCCCCCcccccc
Q psy8879 96 RVSLLDCTLSNVTVLP-----GKFLEGV-TLHGLVISSGELKNISDGAFIGL----SSPLQALGLPNNLLSVVPTSALAP 165 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp-----~~~~~~~-~L~~L~Ls~n~i~~i~~~~F~~l----~~~L~~L~Ls~N~L~~lp~~~~~~ 165 (694)
.|+.||+++|.++..+ ..+..++ +|++|++++|.+.......|... ..+|++|+|++|.++......+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 6999999999998876 5667788 89999999999999887777664 356999999999999877653333
Q ss_pred ----CCCCccEEEccCCCCCCCCcccc----cC-CCCccEEEecCCCCCCCCccc----cCCCC-CCcEEeccCCcccch
Q psy8879 166 ----LAPNLDRLDLSHNQLYKLENTSF----KG-LSSLNFLDLSYNKLMTLSQDC----LAPLV-TLRVLRLQGNRLTVS 231 (694)
Q Consensus 166 ----l~~~L~~L~Ls~N~L~~i~~~~f----~~-L~~L~~L~Ls~N~l~~i~~~~----f~~L~-~L~~L~Ls~N~l~~~ 231 (694)
++++|++|+|++|.++......+ .. .++|++|+|++|.+++..... +..++ +|++|++++|++++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 22689999999999988876554 33 368999999999988655433 34555 899999999998876
Q ss_pred hhhhhc----cC-cccccccCCCCcCCCCCC---CCCCCC-ccccceeeccCCccccccc----ccccCCcccceecccC
Q psy8879 232 VVAALQ----GL-RSVTDLDLSHNLLAGPLG---PSTVPR-LSSLKVLSIAHNQFSSVRR----GALAGLDKLTSLSCHH 298 (694)
Q Consensus 232 ~~~~~~----~L-~~L~~L~Ls~N~l~~~i~---p~~~~~-l~~L~~L~Ls~N~L~~i~~----~~~~~L~~L~~L~Ls~ 298 (694)
.+..+. .. ++|++|++++|.+.+.-. +..+.. .++|++|+|++|.+++... ..+..+++|++|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 655443 34 588888888888764100 122222 3477788888887776543 2345567777777777
Q ss_pred Cccccccch-------hhhcccccccccCCCCcccccc
Q psy8879 299 NQIDVLEDH-------SFRALSTLSHLDLAHNRIVAVS 329 (694)
Q Consensus 299 N~L~~i~~~-------~f~~l~~L~~L~Ls~N~L~~i~ 329 (694)
|.+..+... .+..+++|+.||+++|++....
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 775554432 3445556666666666665543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.6e-23 Score=223.76 Aligned_cols=258 Identities=20% Similarity=0.166 Sum_probs=115.5
Q ss_pred eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcch----hcCCCCCccEEEccCCCCCCCCc---cc-------
Q psy8879 97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGA----FIGLSSPLQALGLPNNLLSVVPT---SA------- 162 (694)
Q Consensus 97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~----F~~l~~~L~~L~Ls~N~L~~lp~---~~------- 162 (694)
++...++...+..++..+..+++|++|++++|.+....... |.. .++|++|+|++|.+..+.. ..
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 33333444444455555555666666666666665443322 222 2235555555554433221 11
Q ss_pred cccCCCCccEEEccCCCCCCC----CcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhcc
Q psy8879 163 LAPLAPNLDRLDLSHNQLYKL----ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238 (694)
Q Consensus 163 ~~~l~~~L~~L~Ls~N~L~~i----~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~ 238 (694)
+..+ ++|++|+|++|.++.. .+..+..+++|++|+|++|.++...+..+.. .+..
T Consensus 90 l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~ 148 (386)
T 2ca6_A 90 LLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQE 148 (386)
T ss_dssp HTTC-TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHH
T ss_pred HhhC-CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHH
Confidence 1333 4555555555554441 2223444455555555555443322222211 1111
Q ss_pred C---------cccccccCCCCcCCCCCCC---CCCCCccccceeeccCCcccc-----cccccccCCcccceecccCCcc
Q psy8879 239 L---------RSVTDLDLSHNLLAGPLGP---STVPRLSSLKVLSIAHNQFSS-----VRRGALAGLDKLTSLSCHHNQI 301 (694)
Q Consensus 239 L---------~~L~~L~Ls~N~l~~~i~p---~~~~~l~~L~~L~Ls~N~L~~-----i~~~~~~~L~~L~~L~Ls~N~L 301 (694)
+ ++|++|++++|.+.+.-.+ ..+..+++|+.|++++|.++. +.+..+..+++|++|+|++|.+
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 2 4444444444444310001 122334445555555554441 1222344455555555555555
Q ss_pred c----cccchhhhcccccccccCCCCcccccc----ccchh--cccccCeeecCCCCCCC-----cChhhhCCCCCCCEE
Q psy8879 302 D----VLEDHSFRALSTLSHLDLAHNRIVAVS----GASLA--HLSNLTTLDLSHNFLRA-----LTQDLITPLKSLQEL 366 (694)
Q Consensus 302 ~----~i~~~~f~~l~~L~~L~Ls~N~L~~i~----~~~f~--~l~~L~~L~Ls~N~L~~-----l~~~~~~~l~~L~~L 366 (694)
+ ...+..+..+++|+.|+|++|++++.. +..+. .+++|+.|+|++|.++. ++......+++|+.|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 3 112224445555555555555555442 22221 25556666666666555 333322445566666
Q ss_pred EccCCCCCCC
Q psy8879 367 RLDDNDISME 376 (694)
Q Consensus 367 ~Ls~N~L~~l 376 (694)
++++|+++..
T Consensus 309 ~l~~N~l~~~ 318 (386)
T 2ca6_A 309 ELNGNRFSEE 318 (386)
T ss_dssp ECTTSBSCTT
T ss_pred EccCCcCCcc
Confidence 6666665533
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.9e-20 Score=184.59 Aligned_cols=177 Identities=28% Similarity=0.352 Sum_probs=112.3
Q ss_pred EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCC
Q psy8879 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179 (694)
Q Consensus 100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~ 179 (694)
++|+.++++.+|..+. ++|++|++++|.++.++...|.++. +|++|++++|.++.+++..|..+ ++|++|+|++|+
T Consensus 12 v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred EEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCC-CCcCEEECCCCc
Confidence 4445555666665442 3667777777777766666555543 37777777777777766666666 677777777777
Q ss_pred CCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCC
Q psy8879 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259 (694)
Q Consensus 180 L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~ 259 (694)
++.+++..|.++++|++|++++|+++++++..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---- 163 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---- 163 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----
Confidence 7766666666777777777777777766666666667777777777766655555566666666666666655432
Q ss_pred CCCCccccceeeccCCcccccccccccCC
Q psy8879 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGL 288 (694)
Q Consensus 260 ~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L 288 (694)
+++|+.|+++.|++++..|..+..+
T Consensus 164 ----~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 164 ----CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----CCCHHHHHHHHHhCCceeeccCccc
Confidence 3455666666666665544444433
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=6.1e-22 Score=210.64 Aligned_cols=253 Identities=17% Similarity=0.151 Sum_probs=170.3
Q ss_pred ccEEEccCCCCCCCCcchhcCC-CCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCC-CcccccCCCCccEE
Q psy8879 120 LHGLVISSGELKNISDGAFIGL-SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKL-ENTSFKGLSSLNFL 197 (694)
Q Consensus 120 L~~L~Ls~n~i~~i~~~~F~~l-~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i-~~~~f~~L~~L~~L 197 (694)
++.++++++.+. +..+..+ ..+++.|++++|.+.+.++.. ..+ ++|++|++++|.++.. .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 556666666554 2233322 134788888888777766653 355 7888888888877653 44567778888888
Q ss_pred EecCCCCCCCCccccCCCCCCcEEeccCC-cccch-hhhhhccCcccccccCCCC-cCCCCCCCCCCCCcc-ccceeecc
Q psy8879 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGN-RLTVS-VVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLS-SLKVLSIA 273 (694)
Q Consensus 198 ~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N-~l~~~-~~~~~~~L~~L~~L~Ls~N-~l~~~i~p~~~~~l~-~L~~L~Ls 273 (694)
++++|.+++..+..+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++...+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888877666667777888888888888 56653 5666777888888888888 766421134466677 88888888
Q ss_pred CC--ccc-ccccccccCCcccceecccCCc-cccccchhhhcccccccccCCCCc-cccccccchhcccccCeeecCCCC
Q psy8879 274 HN--QFS-SVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHLSNLTTLDLSHNF 348 (694)
Q Consensus 274 ~N--~L~-~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~N~ 348 (694)
+| .++ ...+..+.++++|++|++++|. ++......+..+++|+.|++++|. +.......+.++++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 88 343 2223456677888888888887 665555577788888888888884 33332335777888888888888
Q ss_pred CCCcChhhhCCC-CCCCEEEccCCCCCCCCcccc
Q psy8879 349 LRALTQDLITPL-KSLQELRLDDNDISMEPECIY 381 (694)
Q Consensus 349 L~~l~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f 381 (694)
+. .+.+..+ .+++.|++++|+++++.+..+
T Consensus 283 i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 VP---DGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence 33 3233323 236666688888886655443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.2e-20 Score=215.83 Aligned_cols=186 Identities=24% Similarity=0.343 Sum_probs=108.5
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEE
Q psy8879 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198 (694)
Q Consensus 119 ~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~ 198 (694)
+|+.|++++|.++.++...+ ++|++|+|++|.|+.+| . .+ ++|++|+|++|+|++++. |.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip-~---~l-~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALISLP-E---LP-ASLEYLDACDNRLSTLPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCSCCC-C---CC-TTCCEEECCSSCCSCCCC--CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCcccc-c---cc-CCCCEEEccCCCCCCcch--hhc--CCCEEE
Confidence 56777777777776655432 44777777777777666 1 23 667777777777776554 443 677777
Q ss_pred ecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccc
Q psy8879 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278 (694)
Q Consensus 199 Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~ 278 (694)
|++|++++++. .+++|++|++++|++++ +|. .+++|++|++++|.+.+ + |. +. ++|+.|+|++|.|+
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l-p~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L-PE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-CC-CC--TTCCEEECCSSCCS
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c-ch-hh--CCCCEEECcCCCCC
Confidence 77777766544 45667777777776664 333 34566666666666665 3 33 43 56666666666666
Q ss_pred ccccccccCCccc-------ceecccCCccccccchhhhcccccccccCCCCccccccccchhc
Q psy8879 279 SVRRGALAGLDKL-------TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335 (694)
Q Consensus 279 ~i~~~~~~~L~~L-------~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~ 335 (694)
.++. |.. +| +.|+|++|+|+.++...+ .+++|+.|+|++|++++..|..+..
T Consensus 194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 5544 322 44 555555555555544322 2555555555555555554544443
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.1e-21 Score=208.59 Aligned_cols=254 Identities=20% Similarity=0.162 Sum_probs=201.2
Q ss_pred CeeEEEcCCCCCCCCCccccCC--CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCC-CccccccCCCCccE
Q psy8879 96 RVSLLDCTLSNVTVLPGKFLEG--VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV-PTSALAPLAPNLDR 172 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~~~~--~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~l-p~~~~~~l~~~L~~ 172 (694)
.++.+|++++.+. +..+..+ .+++.|++++|.+.......+ . ..+|++|++++|.++.. .+..+..+ ++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-S-PFRVQHMDLSNSVIEVSTLHGILSQC-SKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCC-C-CBCCCEEECTTCEECHHHHHHHHTTB-CCCSE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhc-c-CCCCCEEEccCCCcCHHHHHHHHhhC-CCCCE
Confidence 4778999998876 4555555 789999999999988876643 3 45699999999998753 34457788 99999
Q ss_pred EEccCCCCCCCCcccccCCCCccEEEecCC-CCCCC-CccccCCCCCCcEEeccCC-cccch-hhhhhccCc-ccccccC
Q psy8879 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYN-KLMTL-SQDCLAPLVTLRVLRLQGN-RLTVS-VVAALQGLR-SVTDLDL 247 (694)
Q Consensus 173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N-~l~~i-~~~~f~~L~~L~~L~Ls~N-~l~~~-~~~~~~~L~-~L~~L~L 247 (694)
|+|++|.++...+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999988777778889999999999999 67753 3455788999999999999 88865 577788999 9999999
Q ss_pred CCCc--CC-CCCCCCCCCCccccceeeccCCc-ccccccccccCCcccceecccCCc-cccccchhhhcccccccccCCC
Q psy8879 248 SHNL--LA-GPLGPSTVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAH 322 (694)
Q Consensus 248 s~N~--l~-~~i~p~~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~ 322 (694)
++|. ++ +.+ +..+..+++|+.|++++|. +++..+..+.++++|++|++++|. +.......+..+++|+.|++++
T Consensus 203 ~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 203 SGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9994 44 122 4456778999999999999 776666678899999999999995 3333233678899999999999
Q ss_pred Cccccccccchhcc-cccCeeecCCCCCCCcChhhhCC
Q psy8879 323 NRIVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITP 359 (694)
Q Consensus 323 N~L~~i~~~~f~~l-~~L~~L~Ls~N~L~~l~~~~~~~ 359 (694)
| ++...+..+ ..|..|++++|++++..+..++.
T Consensus 282 ~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 282 I----VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp S----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred c----cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 9 444445555 35888889999999988766553
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.6e-21 Score=212.21 Aligned_cols=216 Identities=20% Similarity=0.206 Sum_probs=150.0
Q ss_pred cccCCCCccEEEccCCCCCCCCcc----cccCCCCccEEEecCCCCCCC---Cccc-------cCCCCCCcEEeccCCcc
Q psy8879 163 LAPLAPNLDRLDLSHNQLYKLENT----SFKGLSSLNFLDLSYNKLMTL---SQDC-------LAPLVTLRVLRLQGNRL 228 (694)
Q Consensus 163 ~~~l~~~L~~L~Ls~N~L~~i~~~----~f~~L~~L~~L~Ls~N~l~~i---~~~~-------f~~L~~L~~L~Ls~N~l 228 (694)
+..+ ++|++|+|++|.++...+. .|..+++|++|+|++|.+..+ .|.. |..+++|++|+|++|.+
T Consensus 28 l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4444 5666666666666554322 245566666666666544322 2222 35667777777777777
Q ss_pred cc----hhhhhhccCcccccccCCCCcCCCCCCCCC----CCCc---------cccceeeccCCccccc-cc---ccccC
Q psy8879 229 TV----SVVAALQGLRSVTDLDLSHNLLAGPLGPST----VPRL---------SSLKVLSIAHNQFSSV-RR---GALAG 287 (694)
Q Consensus 229 ~~----~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~----~~~l---------~~L~~L~Ls~N~L~~i-~~---~~~~~ 287 (694)
.. .++..+..+++|++|+|++|.+.+. .+.. +..+ ++|++|++++|.++.. .+ ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 65 3556666677777777777766421 1111 2223 8999999999999732 22 35678
Q ss_pred CcccceecccCCcccc-----ccchhhhcccccccccCCCCccc----cccccchhcccccCeeecCCCCCCCc----Ch
Q psy8879 288 LDKLTSLSCHHNQIDV-----LEDHSFRALSTLSHLDLAHNRIV----AVSGASLAHLSNLTTLDLSHNFLRAL----TQ 354 (694)
Q Consensus 288 L~~L~~L~Ls~N~L~~-----i~~~~f~~l~~L~~L~Ls~N~L~----~i~~~~f~~l~~L~~L~Ls~N~L~~l----~~ 354 (694)
+++|++|++++|+++. +.+..+..+++|+.|+|++|.++ ...+..+..+++|+.|+|++|.+++. .+
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 8999999999999973 33336788999999999999996 44456788999999999999999876 23
Q ss_pred hhh--CCCCCCCEEEccCCCCCC-----CCccc
Q psy8879 355 DLI--TPLKSLQELRLDDNDISM-----EPECI 380 (694)
Q Consensus 355 ~~~--~~l~~L~~L~Ls~N~L~~-----l~~~~ 380 (694)
..+ ..+++|+.|+|++|+++. ++..+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 445 348999999999999997 66554
No 98
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.81 E-value=5.4e-20 Score=197.11 Aligned_cols=212 Identities=19% Similarity=0.223 Sum_probs=161.4
Q ss_pred ceeeccCC-cccccccccccCCcccceecccC-CccccccchhhhcccccccccCCCCccccccccchhcccccCeeecC
Q psy8879 268 KVLSIAHN-QFSSVRRGALAGLDKLTSLSCHH-NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345 (694)
Q Consensus 268 ~~L~Ls~N-~L~~i~~~~~~~L~~L~~L~Ls~-N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls 345 (694)
..++++++ .++++|. +..+++|++|+|++ |.|+.+++..|.++++|+.|+|++|+|+++++..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8888876 88889999999996 99999999899999999999999999999999999999999999999
Q ss_pred CCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccccc-CCccCccccCCcccce----e
Q psy8879 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLL-IPVMLSLCTRSSVVTR----Y 420 (694)
Q Consensus 346 ~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~-~~~~~~~C~~~~~~~~----~ 420 (694)
+|+|+++++..+..++ |+.|+|.+|+|. |||++.||..|++.... .....+.|..+..... .
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~------------c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~ 155 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH------------CSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC------------CCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTT
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc------------CCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCccc
Confidence 9999999998888776 999999999999 99999999999974332 2446788876542111 1
Q ss_pred eEEEEEe---ecCccccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCC-cceeE
Q psy8879 421 RYCVVLI---EGSNILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNY-DPNCL 488 (694)
Q Consensus 421 ~~~~v~~---~~~~~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G-~YtC~ 488 (694)
+..+.+. ......++....+.|.+ +.|....+...... .+.....+++| |.+|+.+|+| .|+|+
T Consensus 156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~~Y~C~ 231 (347)
T 2ifg_A 156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV----MKSGGLPSLGLTLANVTSDLNRKNVTCW 231 (347)
T ss_dssp CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE----CCCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc----ccceecccceEEEeeCChHHCCCeEEEE
Confidence 1112221 22245555667788876 45665554433111 11133455667 9999999999 99999
Q ss_pred EEEEeeeccc
Q psy8879 489 LTITLYIDGD 498 (694)
Q Consensus 489 ~~n~~~~~~~ 498 (694)
|+|..+....
T Consensus 232 a~n~~g~~~~ 241 (347)
T 2ifg_A 232 AENDVGRAEV 241 (347)
T ss_dssp CEETTEECCE
T ss_pred EEcCCCCEEE
Confidence 9998766543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=9.5e-20 Score=184.37 Aligned_cols=161 Identities=25% Similarity=0.350 Sum_probs=123.7
Q ss_pred cccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccccc
Q psy8879 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319 (694)
Q Consensus 240 ~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~ 319 (694)
++|++|++++|.+.+ +.+..|..+++|+.|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 445555555555554 3355566667777777777777777666677777888888888888877777788888888888
Q ss_pred CCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccc
Q psy8879 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWR 398 (694)
Q Consensus 320 Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl 398 (694)
|++|+|+.+ |..+..+++|+.|+|++|+++++++..+..+++|+.|++++|+|. |+|. +.|++.|+
T Consensus 119 Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------c~c~~~~~l~~~~ 185 (229)
T 3e6j_A 119 MCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD------------CECRDIMYLRNWV 185 (229)
T ss_dssp CCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC------------TTBGGGHHHHHHH
T ss_pred ccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc------------CCcchhHHHHHHH
Confidence 888888877 455788999999999999999999988999999999999999999 9996 89999998
Q ss_pred cccc----------cCCccCccccCC
Q psy8879 399 HSTL----------LIPVMLSLCTRS 414 (694)
Q Consensus 399 ~~~~----------~~~~~~~~C~~~ 414 (694)
.... +.+.....|+.+
T Consensus 186 ~~~~~~~~~~~g~~v~~~~~~~C~~~ 211 (229)
T 3e6j_A 186 ADHTSIAMRWDGKAVNDPDSAKCAGT 211 (229)
T ss_dssp HHCGGGEEEESSSEEECTTCSBBTTT
T ss_pred HhCccccccccCcccCCCCcCccCCC
Confidence 6321 224446677654
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.6e-19 Score=179.18 Aligned_cols=149 Identities=28% Similarity=0.389 Sum_probs=78.1
Q ss_pred cEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEec
Q psy8879 121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200 (694)
Q Consensus 121 ~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls 200 (694)
+.++++++.++.++.. ..++|++|++++|.++.+++..|..+ ++|++|++++|+++.+++..|.++++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~----~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG----IPAQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSC----CCTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCC----CCCCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 3455555555555532 12346666666666666555555555 566666666666665555555555566666666
Q ss_pred CCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCC
Q psy8879 201 YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275 (694)
Q Consensus 201 ~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N 275 (694)
+|+++++++..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ +++..+..+++|+.|++++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCC
Confidence 665555555555555555555555555554444444444444444444444443 22333444444444444444
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.4e-19 Score=179.26 Aligned_cols=151 Identities=28% Similarity=0.435 Sum_probs=90.4
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++++++.+|..+. .+|+.|++++|.|+.++...|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCC
Confidence 35666677777776553 4566666666666666655555543 36666666666666655556666 66666666666
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~ 253 (694)
.|+.+++..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666666555666666666666666666665555666666666666666655544444555555555555555443
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3e-19 Score=192.96 Aligned_cols=176 Identities=29% Similarity=0.361 Sum_probs=120.1
Q ss_pred cEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccc-cCCCCccEEEccCCCCCCCCcccccCCCCccEEEe
Q psy8879 121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALA-PLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199 (694)
Q Consensus 121 ~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~-~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~L 199 (694)
+.++++++.++.++.. +...++.|+|++|.|+.+++..|. ++ ++|++|+|++|+|+.+++..|.++++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~~----~~~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS----LPSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSS----CCTTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCcc----CCCCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3678888888887753 234578888888888888777776 67 78888888888888887777888888888888
Q ss_pred cCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCC---CCccccceeeccCCc
Q psy8879 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV---PRLSSLKVLSIAHNQ 276 (694)
Q Consensus 200 s~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~---~~l~~L~~L~Ls~N~ 276 (694)
++|+++.+++..|..+++|++|+|++|+++...+..|.++++|+.|+|++|.+.+ +++..| ..+++|+.|+|++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence 8888887777777777888888888877776666666666666666666666664 333333 345555555555555
Q ss_pred ccccccccccCCcc--cceecccCCccc
Q psy8879 277 FSSVRRGALAGLDK--LTSLSCHHNQID 302 (694)
Q Consensus 277 L~~i~~~~~~~L~~--L~~L~Ls~N~L~ 302 (694)
++.++...+..++. ++.|+|++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 55555544544444 245555555543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3e-19 Score=187.38 Aligned_cols=191 Identities=27% Similarity=0.341 Sum_probs=118.2
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
+..+.+..+.+.++.. +..+ ++|++|++++|.++.++ .+..+++|++|++++|+++++++ +..+++|++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l-~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHH-HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccccc--hhhc-CcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 4444566666665443 3455 77788888888777764 36677778888888877777765 6777777777777
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i 304 (694)
+|++++. ..+..+++|++|++++|.+. +++ .+..+++|++|++++|+++.+
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~-------------------------~~~--~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGIS-------------------------DIN--GLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCC-------------------------CCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCC-------------------------CCh--hhcCCCCCCEEEccCCcCCcc
Confidence 7777642 22555555555555555554 431 244455555555555555554
Q ss_pred cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~ 377 (694)
..+..+++|+.|++++|+++++.+ +..+++|+.|+|++|.+++++. +..+++|+.|++++|+++..|
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence 245556666666666666666544 5566666666666666666543 566667777777776665433
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=7.7e-19 Score=200.81 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=137.1
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L 223 (694)
+|+.|+|++|.|+++|... . ++|++|+|++|+|+.++ ..+++|++|++++|++++++. |.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~-~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---P-PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---C-TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH---c-CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 4777777777777776643 2 56777777777777665 345677777777777777654 443 7777777
Q ss_pred cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303 (694)
Q Consensus 224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~ 303 (694)
++|++++ +|. .+++|+.|++++|.+++ + |. .+++|+.|+|++|.+++++. |. ++|+.|+|++|+|+.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-L-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-C-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence 7777776 333 46777777777777775 4 33 45677777777777777654 44 777777777777776
Q ss_pred ccchhhhccccc-------ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCC-------CEEEcc
Q psy8879 304 LEDHSFRALSTL-------SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL-------QELRLD 369 (694)
Q Consensus 304 i~~~~f~~l~~L-------~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L-------~~L~Ls 369 (694)
++. |.. +| +.|+|++|+|+.++. .+..+++|+.|+|++|.+++..+..+..+... ..++++
T Consensus 195 lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~ 269 (571)
T 3cvr_A 195 LPA--VPV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269 (571)
T ss_dssp CCC--CC----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC-
T ss_pred hhh--HHH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeec
Confidence 665 333 55 777777777777644 34447777777777777776655544433211 122333
Q ss_pred CCCCCCCCcccccCCCC-CCccccccccccc
Q psy8879 370 DNDISMEPECIYVGFNT-MDLELIYSGVWRH 399 (694)
Q Consensus 370 ~N~L~~l~~~~f~~~Np-CdC~l~~~~~wl~ 399 (694)
+|.+..+ .+| |+|...||..+..
T Consensus 270 ~~~~~~~-------~~p~~~~~~~Wl~~~~~ 293 (571)
T 3cvr_A 270 DGQQNTL-------HRPLADAVTAWFPENKQ 293 (571)
T ss_dssp ----------------CCSHHHHTTCC----
T ss_pred ccccccc-------cccchhhHHHHhhhhcc
Confidence 4433322 233 9999999988775
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=176.78 Aligned_cols=152 Identities=24% Similarity=0.409 Sum_probs=101.5
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCc-chhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISD-GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH 177 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~-~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~ 177 (694)
.++|++|.++.+|..+.. .+++|++++|.++.+.. ..|.++. +|++|+|++|.|+.+++..|.++ ++|++|+|++
T Consensus 15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGA-SGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS
T ss_pred EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCC-CCCCEEECCC
Confidence 467777888888776543 45677777777776643 3454443 37777777777777766666666 6777777777
Q ss_pred CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254 (694)
Q Consensus 178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~ 254 (694)
|.++.+++..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77777766667677777777777777777666666666667777777666666556666666666666666665553
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.2e-19 Score=186.28 Aligned_cols=188 Identities=27% Similarity=0.335 Sum_probs=129.4
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEe
Q psy8879 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199 (694)
Q Consensus 120 L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~L 199 (694)
+..+.+..+.+..+... .. +++|++|++++|.++.++. +..+ ++|++|++++|+++++++ +.++++|++|++
T Consensus 26 ~~~~~l~~~~~~~~~~~--~~-l~~L~~L~l~~~~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQ--NE-LNSIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTTCSCTTSEECH--HH-HHTCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHhcCCCcccccch--hh-cCcccEEEccCCCcccChh--HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 34445666666654321 22 3459999999999999965 7788 999999999999999886 899999999999
Q ss_pred cCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc
Q psy8879 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279 (694)
Q Consensus 200 s~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~ 279 (694)
++|.+++++. +..+++|++|++++|++++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++
T Consensus 98 ~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 98 DENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CSSCCCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCcCCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCcccc
Confidence 9999998754 89999999999999999864 4566777777777777777642 345555555555555555555
Q ss_pred cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccc
Q psy8879 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326 (694)
Q Consensus 280 i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~ 326 (694)
+++ +..+++|++|++++|.++.++. +..+++|+.|++++|+++
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEE
T ss_pred chh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCccc
Confidence 443 4444555555555554444321 333444444444444333
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=176.06 Aligned_cols=159 Identities=23% Similarity=0.346 Sum_probs=137.5
Q ss_pred ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCC
Q psy8879 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322 (694)
Q Consensus 243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~ 322 (694)
+.+++++|.+.. + |..+. ++|++|++++|.++.++ ..|.++++|++|+|++|.|+.+++..|.++++|+.|+|++
T Consensus 13 ~~l~~~~~~l~~-i-p~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV-L-PKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS-C-CSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc-C-CCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 467778888774 4 43333 58999999999999887 6789999999999999999999999999999999999999
Q ss_pred CccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccc
Q psy8879 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL 402 (694)
Q Consensus 323 N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~ 402 (694)
|+|+++++..|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+|. |||++.||..|+....
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------------C~c~l~~l~~~~~~~~ 155 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY------------CDCNMQWLSDWVKSEY 155 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE------------CSGGGHHHHHHHHHSS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee------------cCCcCHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999 9999999999997543
Q ss_pred cCCccCccccCCcccce
Q psy8879 403 LIPVMLSLCTRSSVVTR 419 (694)
Q Consensus 403 ~~~~~~~~C~~~~~~~~ 419 (694)
. ....+.|+.|...++
T Consensus 156 ~-~~~~~~C~~P~~l~g 171 (193)
T 2wfh_A 156 K-EPGIARCAGPGEMAD 171 (193)
T ss_dssp C-CCSCCBEEESGGGTT
T ss_pred C-CCCCcCcCCchHHCC
Confidence 2 334578887655433
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.7e-19 Score=208.10 Aligned_cols=170 Identities=29% Similarity=0.372 Sum_probs=87.4
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L 223 (694)
+|+.|++++|.+..++. +..+ ++|+.|+|++|.|+.+++ +..+++|+.|+|++|.+.+++ .+..+++|++|+|
T Consensus 44 ~L~~L~l~~n~i~~l~~--l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp TCCCCBCTTCCCCCCTT--GGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCCChH--HccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence 36666666666665542 4555 566666666666655554 555566666666666655543 2555555555555
Q ss_pred cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303 (694)
Q Consensus 224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~ 303 (694)
++|++.+. ..+..+++|+.|+|++|.+ +++ ..+..+++|+.|+|++|.|+.
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l-------------------------~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKI-------------------------TDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCC-------------------------CCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCcc-------------------------CCc--hhhcccCCCCEEECcCCcCCC
Confidence 55555532 2344444444444444444 443 234444444444444444444
Q ss_pred ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcC
Q psy8879 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353 (694)
Q Consensus 304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~ 353 (694)
+++ +..+++|+.|+|++|+|++++ .+..+++|+.|+|++|.+...+
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred chh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence 433 444455555555555554441 2444555555555555554443
No 109
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=2.7e-18 Score=188.48 Aligned_cols=251 Identities=14% Similarity=0.232 Sum_probs=213.9
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEE
Q psy8879 118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFL 197 (694)
Q Consensus 118 ~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L 197 (694)
..++.+.+. +.++.|+..+|.+. +|+.+.+.++ ++.++..+|.+. +|+.+.+.. .++.+...+|.++++|+.+
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~--~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS--QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC--CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEEC-CccCEehHhhcccC--CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 567788875 46888999999873 4999999876 888998889875 699999985 7888888899999999999
Q ss_pred EecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcc
Q psy8879 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277 (694)
Q Consensus 198 ~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L 277 (694)
++.+|+++.++..+|. ..+|+.+.+.++ ++.+...+|.++++|+.+++..+ +. .++...|.+ .+|+.+.+ .+.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCc
Confidence 9999999999988888 488999999854 77677888999999999999875 43 366777877 78999999 5668
Q ss_pred cccccccccCCcccceecccCCccc-----cccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCc
Q psy8879 278 SSVRRGALAGLDKLTSLSCHHNQID-----VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352 (694)
Q Consensus 278 ~~i~~~~~~~L~~L~~L~Ls~N~L~-----~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l 352 (694)
+.+...+|.++++|+.+++.+|.+. .++..+|.++++|+.++|. +.++.+...+|.++.+|+.++|.+| ++.+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 8888899999999999999888765 7888999999999999998 5699999999999999999999654 8889
Q ss_pred ChhhhCCCCCCCEEEccCCCCCCCCcccccCC
Q psy8879 353 TQDLITPLKSLQELRLDDNDISMEPECIYVGF 384 (694)
Q Consensus 353 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~ 384 (694)
...+|.++ +|+.+++.+|.+..++...|.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 99999999 99999999999998888888764
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.8e-19 Score=192.14 Aligned_cols=238 Identities=18% Similarity=0.195 Sum_probs=137.3
Q ss_pred CCCccEEEccCCCCC--CCCcchhcCCCCCccEEEccCCCCCCCCcccccc--------CCCCccEEEccCCCCCCCCcc
Q psy8879 117 GVTLHGLVISSGELK--NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP--------LAPNLDRLDLSHNQLYKLENT 186 (694)
Q Consensus 117 ~~~L~~L~Ls~n~i~--~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~--------l~~~L~~L~Ls~N~L~~i~~~ 186 (694)
+++|+.|+|++|+|. ......|. .++.+.+..| .++..+|.+ + ++|+.|+|.+ .++.+...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~----~~~~~~~~~~---~I~~~aF~~~~~~~~~g~-~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP----NGKFYIYMAN---FVPAYAFSNVVNGVTKGK-QTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG----GGCCEEECTT---EECTTTTEEEETTEEEEC-TTCCC-CBCT-TCCEECTT
T ss_pred hccCeEEecCcceeEEecCcccccc----cccccccccc---ccCHHHhccccccccccc-CCCcEEECCc-cccchhHH
Confidence 455666666666665 22221111 1233333333 344444555 5 5555555555 55555555
Q ss_pred cccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcc----cchhhhhhccCcc---------------------
Q psy8879 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL----TVSVVAALQGLRS--------------------- 241 (694)
Q Consensus 187 ~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l----~~~~~~~~~~L~~--------------------- 241 (694)
+|.++++|++|++.+|.+..+++.+|..+.++..+.+..+.. .......|.++..
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 555555555555555555555555555554444444433211 1111222322223
Q ss_pred -----cccccCCCCcCCCCCCCCCC-CCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879 242 -----VTDLDLSHNLLAGPLGPSTV-PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315 (694)
Q Consensus 242 -----L~~L~Ls~N~l~~~i~p~~~-~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L 315 (694)
+..+.+.++-... ....+ ..+++|+.|+|++|+++.++..+|.++++|++|+|.+| ++.++..+|.++++|
T Consensus 199 ~~~~~~~~l~~~~~l~~~--~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNA--DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp CCGGGCSEEEEEECCCHH--HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred cCccccceEEEeeeecHH--HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 3333332221100 00001 12567888888887788887778888888888888776 777777788888888
Q ss_pred c-cccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEE
Q psy8879 316 S-HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367 (694)
Q Consensus 316 ~-~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~ 367 (694)
+ .+++.+ .++.+.+.+|.++++|+.|++++|.++.++..+|.++++|+.++
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7 888877 77777777888888888888888888888877788888887775
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.5e-18 Score=170.60 Aligned_cols=160 Identities=23% Similarity=0.345 Sum_probs=136.4
Q ss_pred ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccc-cccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321 (694)
Q Consensus 243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~-~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls 321 (694)
+.+++++|.+.. + |..+.. +|++|++++|.++++++. .|.++++|++|+|++|+|+.+.+..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~~-i-p~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKE-I-PRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSS-C-CSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCc-C-ccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 567788888764 4 444433 889999999999988764 58899999999999999999988899999999999999
Q ss_pred CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccc
Q psy8879 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHST 401 (694)
Q Consensus 322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~ 401 (694)
+|+|+++++..|.++++|+.|+|++|+++++++..+..+++|+.|++++|+|+ |+|.+.|+..|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------c~c~l~~~~~~l~~~ 154 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN------------CNCHLAWFAEWLRKK 154 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC------------CSGGGHHHHHHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc------------CcCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999 999999999999743
Q ss_pred ccCCccCccccCCcccce
Q psy8879 402 LLIPVMLSLCTRSSVVTR 419 (694)
Q Consensus 402 ~~~~~~~~~C~~~~~~~~ 419 (694)
. .....+.|..+...++
T Consensus 155 ~-~~~~~~~C~~P~~l~~ 171 (192)
T 1w8a_A 155 S-LNGGAARCGAPSKVRD 171 (192)
T ss_dssp C-CSGGGCBBCSSTTTTT
T ss_pred C-CCCCCCCCCCChHHcC
Confidence 2 2234567877655443
No 112
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.75 E-value=1.2e-17 Score=183.38 Aligned_cols=263 Identities=15% Similarity=0.247 Sum_probs=225.3
Q ss_pred CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879 96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L 175 (694)
.++.+.+. ++++.++...+...+|+.+.+..+ ++.|+..+|.+. +|+.+.+.+ .++.+...+|.++ ++|+.+++
T Consensus 114 ~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c-~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYC-YNLKKADL 187 (401)
T ss_dssp SCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTC-TTCCEEEC
T ss_pred CccEEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCc-ccCCeeec
Confidence 44455554 346666555444568999999766 999999999984 599999996 8999999999999 99999999
Q ss_pred cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP 255 (694)
Q Consensus 176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 255 (694)
++|+++.++..+|. ..+|+.+.|.. .++.+...+|.++++|+.+.+..+ ++.+...+|.+ .+|+.+.+.+ .+. .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-N 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-E
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-E
Confidence 99999999999998 58999999984 499999999999999999999875 66667778888 7899999954 454 3
Q ss_pred CCCCCCCCccccceeeccCCccc-----ccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccc
Q psy8879 256 LGPSTVPRLSSLKVLSIAHNQFS-----SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330 (694)
Q Consensus 256 i~p~~~~~l~~L~~L~Ls~N~L~-----~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~ 330 (694)
++...|.++++|+.+++.+|.+. .+...+|.++++|+.+.|. +.++.+...+|.++++|+.+.|..| ++.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 67889999999999999988776 6888999999999999999 5699999999999999999999654 899999
Q ss_pred cchhcccccCeeecCCCCCCCcChhhhCCCC-CCCEEEccCCCC
Q psy8879 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDI 373 (694)
Q Consensus 331 ~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~-~L~~L~Ls~N~L 373 (694)
.+|.++ +|+.|++++|.+..+....|..++ +++.|.+..+.+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 999999 999999999999999988888884 788998877654
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.5e-18 Score=200.18 Aligned_cols=194 Identities=27% Similarity=0.329 Sum_probs=139.2
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
+..+.+..+.+..+.. +..+ ++|+.|++++|.+..++ .|..+++|+.|+|++|++.++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--------------- 82 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--------------- 82 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---------------
T ss_pred HHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---------------
Confidence 3334444444444333 3344 45555555555555443 24445555555555555444433
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i 304 (694)
+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+.+++ .+..+++|+.|+|++|.++.+
T Consensus 83 -----------l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 83 -----------LTNLKNLGWLFLDENKIKD-L--SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp -----------GGGCTTCCEEECCSSCCCC-C--TTSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC
T ss_pred -----------hccCCCCCEEECcCCCCCC-C--hhhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc
Confidence 4445555555555555554 2 24677888899999999888864 478899999999999999988
Q ss_pred cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 380 (694)
..+..+++|+.|+|++|+|+++.+ +..+++|+.|+|++|+|++++ .+..+++|+.|+|++|++...|...
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccc
Confidence 468999999999999999999977 889999999999999999984 4888999999999999998766543
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=2.9e-17 Score=166.07 Aligned_cols=150 Identities=28% Similarity=0.346 Sum_probs=82.4
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++++++.+|..+. ++|+.|++++|.++.+.+..|.++. +|++|+|++|.|+.+++..|..+ ++|++|+|++|
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l-~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccC-CCcCEEECCCC
Confidence 35666667777776543 4566666666666665555554443 36666666666655555555555 55556666555
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~ 253 (694)
+|+.+++..|..+++|++|+|++|+++.++. .+..+++|++|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5555555555555555555555555554432 2445555555555555555444444444444444444444443
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.3e-18 Score=185.36 Aligned_cols=256 Identities=13% Similarity=0.137 Sum_probs=195.6
Q ss_pred CCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCC--CCCccccccCCCCccEEEccCCCCCCCCcccccC----
Q psy8879 117 GVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS--VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG---- 190 (694)
Q Consensus 117 ~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~--~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~---- 190 (694)
+.++++|.++++ +...+...+...+.+|++|+|++|++. ......+ +.++.+.+..| .++..+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTT---EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc----ccccccccccc---ccCHHHhcccccc
Confidence 346788888753 222222233343567999999999998 3333322 33455666666 567788888
Q ss_pred ----CCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC---CCCCCCCCCCC
Q psy8879 191 ----LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL---AGPLGPSTVPR 263 (694)
Q Consensus 191 ----L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l---~~~i~p~~~~~ 263 (694)
+++|++|+|.+ .++.+...+|.++++|+.|++.+|.+..+.+.+|.++.++..+.+..+.. ...+....|.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999999 99999999999999999999999999888889999988888888766322 11133445655
Q ss_pred ccccc-eeeccCCc------------------------ccccccccc-cCCcccceecccCCccccccchhhhccccccc
Q psy8879 264 LSSLK-VLSIAHNQ------------------------FSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317 (694)
Q Consensus 264 l~~L~-~L~Ls~N~------------------------L~~i~~~~~-~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 317 (694)
+..|+ .+.+.... +.......+ ..+++|++|+|++|+++.++..+|.++++|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 55555 33332110 111111111 13789999999999999999999999999999
Q ss_pred ccCCCCccccccccchhcccccC-eeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879 318 LDLAHNRIVAVSGASLAHLSNLT-TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383 (694)
Q Consensus 318 L~Ls~N~L~~i~~~~f~~l~~L~-~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 383 (694)
|+|.+| ++.++..+|.++++|+ .+++.+ .++.+++..|.++++|+.+++++|.++.++...|.+
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 999998 9999999999999999 999999 899999999999999999999999999999998854
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.2e-17 Score=161.55 Aligned_cols=157 Identities=26% Similarity=0.380 Sum_probs=135.7
Q ss_pred cccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321 (694)
Q Consensus 242 L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls 321 (694)
.+.++++++.+.. + |..+ .++|+.|++++|+++++++..|.++++|++|++++|.++.+++..|..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~-~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-V-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-C-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-C-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4567777777764 3 3323 2588999999999999888888899999999999999999998889999999999999
Q ss_pred CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccc
Q psy8879 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHS 400 (694)
Q Consensus 322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~ 400 (694)
+|+++++++..|..+++|+.|+|++|+++++++..+..+++|+.|++++|++. |+|. +.|+..|++.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~l~~~~~~ 152 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD------------CSCPRIDYLSRWLNK 152 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------------CCHHHHHHHHHHHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee------------ccCccHHHHHHHHhh
Confidence 99999998888999999999999999999999988899999999999999999 9997 8899999976
Q ss_pred cccCCccCccccCC
Q psy8879 401 TLLIPVMLSLCTRS 414 (694)
Q Consensus 401 ~~~~~~~~~~C~~~ 414 (694)
........+.|..+
T Consensus 153 ~~~~~~~~~~C~~~ 166 (177)
T 2o6r_A 153 NSQKEQGSAKCSGS 166 (177)
T ss_dssp TGGGEESCCBBTTT
T ss_pred CccccccCcEeCCC
Confidence 55555567888754
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.6e-18 Score=177.66 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=78.2
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls 224 (694)
++.+++++|.+++++ .+..+ ++|++|++++|.++.++ .+..+++|++|++++|+++++++ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 344444444444443 13344 44455555544444443 24444444444444444444433 4444444444444
Q ss_pred CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304 (694)
Q Consensus 225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i 304 (694)
+|++++. +. +.. ++|+.|++++|++++++ .+.++++|++|++++|+++.+
T Consensus 94 ~N~l~~l--------------------------~~-~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 94 RNRLKNL--------------------------NG-IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp SSCCSCC--------------------------TT-CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC
T ss_pred CCccCCc--------------------------Cc-ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC
Confidence 4444321 11 111 34444444444444432 244455555555555555544
Q ss_pred cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcC
Q psy8879 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~ 353 (694)
+ .+..+++|+.|++++|+++++ ..+..+++|+.|++++|.+...+
T Consensus 144 ~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 V--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 3 344555555555555555554 33455555555555555555444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.8e-17 Score=171.33 Aligned_cols=167 Identities=21% Similarity=0.258 Sum_probs=81.0
Q ss_pred eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879 97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls 176 (694)
+..++++.+.++.++ .+..+++|++|++++|.++.++ .|..+ .+|++|++++|.++++++ +..+ ++|++|+|+
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~--l~~l-~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP--LKDL-TKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTC-SSCCEEECC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh--hccC-CCCCEEECC
Confidence 444555555555554 3444555555555555555554 23332 235555555555555554 4444 555555555
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i 256 (694)
+|+++.++. +.. ++|++|++++|++++++ .+..+++|++|++++|++++. ..+..+++|++|++++|.+.+.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-
Confidence 555555443 112 45555555555555442 244555555555555555432 1344444455555554444431
Q ss_pred CCCCCCCccccceeeccCCccccc
Q psy8879 257 GPSTVPRLSSLKVLSIAHNQFSSV 280 (694)
Q Consensus 257 ~p~~~~~l~~L~~L~Ls~N~L~~i 280 (694)
..+..+++|+.|++++|.+...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 2344444444444444444433
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=4e-18 Score=195.04 Aligned_cols=276 Identities=12% Similarity=0.046 Sum_probs=145.8
Q ss_pred CCeeEEEcCCCCCCCC-----CccccCCCCccEEEccCCCCCCCCcchhc---CCCCCccEEEccCCCCCCCCccccccC
Q psy8879 95 ERVSLLDCTLSNVTVL-----PGKFLEGVTLHGLVISSGELKNISDGAFI---GLSSPLQALGLPNNLLSVVPTSALAPL 166 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~l-----p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~---~l~~~L~~L~Ls~N~L~~lp~~~~~~l 166 (694)
..|+.|++++|.++.. +.....+++|++|++++|.++.+....+. ...++|++|++++|.+..++. .+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhh
Confidence 3788999999887432 23344677899999998888766544432 223568899998887776553 45555
Q ss_pred CCCccEEEccCC---------------------------CCCCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCC
Q psy8879 167 APNLDRLDLSHN---------------------------QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTL 218 (694)
Q Consensus 167 ~~~L~~L~Ls~N---------------------------~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L 218 (694)
++|++|+++.. ....+ +..+..+++|++|++++|.+++... ..+..+++|
T Consensus 243 -~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 243 -ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp -TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred -hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 66666666532 11111 2334556677777777776543322 234566677
Q ss_pred cEEeccCCcccchhhhhhccCcccccccCCC-----------CcCCCCCCCCCCCCccccceeeccCCcccccccccccC
Q psy8879 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSH-----------NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287 (694)
Q Consensus 219 ~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~-----------N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~ 287 (694)
++|+++++-.....+..+..+++|++|++++ |.+++.-.......+++|++|+++.|.+++.....+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 7777763222222333345566677777762 33332100111233566666666666665543333332
Q ss_pred -Ccccceeccc----CCccccccc-----hhhhcccccccccCCCCc--cccccccchh-cccccCeeecCCCCCCCcC-
Q psy8879 288 -LDKLTSLSCH----HNQIDVLED-----HSFRALSTLSHLDLAHNR--IVAVSGASLA-HLSNLTTLDLSHNFLRALT- 353 (694)
Q Consensus 288 -L~~L~~L~Ls----~N~L~~i~~-----~~f~~l~~L~~L~Ls~N~--L~~i~~~~f~-~l~~L~~L~Ls~N~L~~l~- 353 (694)
+++|++|+++ .|.++..+. ..+.++++|+.|++++|. +++.....+. .+++|+.|+|++|.+++..
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 5566666664 445544321 123445555555554322 3333222222 2455555555555544321
Q ss_pred hhhhCCCCCCCEEEccCCCC
Q psy8879 354 QDLITPLKSLQELRLDDNDI 373 (694)
Q Consensus 354 ~~~~~~l~~L~~L~Ls~N~L 373 (694)
+..+..+++|+.|++++|++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCC
T ss_pred HHHHhcCcccCeeeccCCCC
Confidence 22334455555555555554
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2.4e-18 Score=196.89 Aligned_cols=280 Identities=16% Similarity=0.132 Sum_probs=193.2
Q ss_pred CCeeEEEcCCCCCCC-----CCccccCCCCccEEEccCCCCCCCCcchhcCCC--------------------------C
Q psy8879 95 ERVSLLDCTLSNVTV-----LPGKFLEGVTLHGLVISSGELKNISDGAFIGLS--------------------------S 143 (694)
Q Consensus 95 ~~L~~Ldls~n~l~~-----lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~--------------------------~ 143 (694)
..|+.|+++.|.++. ++..+..+++|++|++++|.+..++ ..|.++. .
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 377888888888762 3334456778888888887766543 2232222 2
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCC-CccccCCCCCCcEE
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTL-SQDCLAPLVTLRVL 221 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i-~~~~f~~L~~L~~L 221 (694)
+|+.|+++++....++. .+..+ ++|++|+|++|.++.... ..+.++++|++|+++ +.+... .+..+..+++|++|
T Consensus 271 ~L~~L~l~~~~~~~l~~-~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPI-LFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TCCEEEETTCCTTTGGG-GGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccCccccchhHHHH-HHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 34445554443344443 45566 899999999998765433 336889999999999 444332 23334668899999
Q ss_pred ecc-----------CCcccchhh-hhhccCcccccccCCCCcCCCCCCCCCCCC-ccccceeecc----CCcccccc---
Q psy8879 222 RLQ-----------GNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLGPSTVPR-LSSLKVLSIA----HNQFSSVR--- 281 (694)
Q Consensus 222 ~Ls-----------~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~-l~~L~~L~Ls----~N~L~~i~--- 281 (694)
+++ .|.+++... .....+++|++|+++.|.+++.. ...+.. +++|+.|+++ .|.+++.+
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH-HHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 999 366765433 33556899999999888887532 333433 7899999996 67787642
Q ss_pred --cccccCCcccceecccCCc--cccccchhhh-cccccccccCCCCcccccc-ccchhcccccCeeecCCCCCCCc-Ch
Q psy8879 282 --RGALAGLDKLTSLSCHHNQ--IDVLEDHSFR-ALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRAL-TQ 354 (694)
Q Consensus 282 --~~~~~~L~~L~~L~Ls~N~--L~~i~~~~f~-~l~~L~~L~Ls~N~L~~i~-~~~f~~l~~L~~L~Ls~N~L~~l-~~ 354 (694)
+..+.++++|++|+++++. ++......+. .+++|+.|++++|++++.. +..+.++++|+.|+|++|.+++. .+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 2236678999999997543 5543333333 4789999999999998743 34457889999999999998653 23
Q ss_pred hhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879 355 DLITPLKSLQELRLDDNDISMEPEC 379 (694)
Q Consensus 355 ~~~~~l~~L~~L~Ls~N~L~~l~~~ 379 (694)
.....+++|+.|++++|+++.....
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred HHHHhcCccCeeECcCCcCCHHHHH
Confidence 4455789999999999998855433
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-16 Score=156.70 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=104.0
Q ss_pred CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223 (694)
Q Consensus 144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L 223 (694)
+|++|++++|.++.++ .+..+ ++|++|++++|.++.++ .+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4778888888887777 36666 78888888888766554 5777888888888888887766666777888888888
Q ss_pred cCCcccchhhhhhccCcccccccCCCCc-CCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccc
Q psy8879 224 QGNRLTVSVVAALQGLRSVTDLDLSHNL-LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302 (694)
Q Consensus 224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~-l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~ 302 (694)
++|++++..+..+..+++|++|++++|. +.. + + .+..+++|+.|++++|.+++++ .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-I-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-C-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-c-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 8888877677777777777777777776 443 3 2 4566666666666666666654 4555666666666666553
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=9e-17 Score=158.32 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=90.4
Q ss_pred cCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879 189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268 (694)
Q Consensus 189 ~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~ 268 (694)
..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..+. .+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~-------------------------~l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPIS-------------------------GLSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGT-------------------------TCTTCC
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhh-------------------------cCCCCC
Confidence 45566777777777777655 36666777777777765442 12344 444555
Q ss_pred eeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCc-cccccccchhcccccCeeecCCC
Q psy8879 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHLSNLTTLDLSHN 347 (694)
Q Consensus 269 ~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~N 347 (694)
+|++++|.+++..+..+.++++|++|++++|+++...+..+..+++|+.|++++|+ ++.++ .+..+++|+.|++++|
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC
Confidence 55555555554444445555556666666665555444555566666666666665 55553 3566666777777777
Q ss_pred CCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879 348 FLRALTQDLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 348 ~L~~l~~~~~~~l~~L~~L~Ls~N~L~ 374 (694)
++++++ .+..+++|+.|++++|++.
T Consensus 170 ~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCcChH--HhccCCCCCEEEeeCcccC
Confidence 766655 3556677777777777664
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=3.8e-16 Score=153.48 Aligned_cols=131 Identities=25% Similarity=0.373 Sum_probs=97.1
Q ss_pred eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcc-hhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879 98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDG-AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS 176 (694)
Q Consensus 98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~-~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls 176 (694)
+.+++++++++.+|..+.. +|++|++++|.++.++.. .|..+. +|++|+|++|.|+.+++..|.++ ++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGA-SHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCc-ccCCEEECC
Confidence 3578888888888876654 778888888888777764 354443 47777777777777777677777 777777777
Q ss_pred CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchh
Q psy8879 177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232 (694)
Q Consensus 177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 232 (694)
+|+|+++++..|.++++|++|+|++|+++++.+..|..+++|++|++++|.+.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 77777777777777777777777777777777777777777777777777776543
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.1e-17 Score=191.23 Aligned_cols=183 Identities=14% Similarity=0.085 Sum_probs=104.0
Q ss_pred CCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCCcccch-hhhhhccCcccccccCCC---------CcCCCCCCC
Q psy8879 190 GLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSH---------NLLAGPLGP 258 (694)
Q Consensus 190 ~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~~~-~~~~~~~L~~L~~L~Ls~---------N~l~~~i~p 258 (694)
.+++|++|++++|.++.... ..+..+++|++|++++| +... .+.....+++|++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 46789999999888654322 23567888889988887 4322 233334577888887733 333211000
Q ss_pred CCCCCccccceeeccCCccccccccccc-CCcccceeccc--C----Cccccccc-----hhhhcccccccccCCCCccc
Q psy8879 259 STVPRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCH--H----NQIDVLED-----HSFRALSTLSHLDLAHNRIV 326 (694)
Q Consensus 259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-~L~~L~~L~Ls--~----N~L~~i~~-----~~f~~l~~L~~L~Ls~N~L~ 326 (694)
.....+++|+.|+++.|.++......+. .+++|++|+++ + +.++..+. ..+..+++|+.|+|++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 0112356777777777776654433333 46677777776 3 44443221 1244556677777755 555
Q ss_pred cccccchhc-ccccCeeecCCCCCCCcChhhh-CCCCCCCEEEccCCCCC
Q psy8879 327 AVSGASLAH-LSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDNDIS 374 (694)
Q Consensus 327 ~i~~~~f~~-l~~L~~L~Ls~N~L~~l~~~~~-~~l~~L~~L~Ls~N~L~ 374 (694)
+.....+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|+++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 444444433 5666666666666654333222 44666666666666664
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=6.1e-17 Score=190.76 Aligned_cols=181 Identities=23% Similarity=0.208 Sum_probs=101.2
Q ss_pred CCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCC
Q psy8879 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP 262 (694)
Q Consensus 183 i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~ 262 (694)
+++..|..+++|+.|+|++|.+..+++..+ .+++|++|+|++|.++ .+|..|.++++|++|+|++|.+. .+ |..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL-PAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC-CSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc-Chhhc
Confidence 345567777777777777777776665543 6777777888777777 56677777778888888888777 34 66677
Q ss_pred CccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccc-cccccCCCCccccccccchhcccccCe
Q psy8879 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST-LSHLDLAHNRIVAVSGASLAHLSNLTT 341 (694)
Q Consensus 263 ~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~-L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 341 (694)
.+++|++|+|++|.++.++.. |.++++|++|+|++|.|++.++..+..+.. +..|+|++|.+++..|. .|+.
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 778888888888888777554 777888888888888887776666655432 23467788887776554 4555
Q ss_pred eecCCC--------CCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879 342 LDLSHN--------FLRALTQDLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 342 L~Ls~N--------~L~~l~~~~~~~l~~L~~L~Ls~N~L~ 374 (694)
|+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 666666 333333444455556666667777654
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=150.11 Aligned_cols=127 Identities=23% Similarity=0.357 Sum_probs=103.1
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++++++.+|..+. .+|++|++++|.|+.++ ..|.++. +|++|+|++|.|+.+++..|.++ ++|++|+|++|
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCC-CCCCEEECCCC
Confidence 47788888888887654 47888888888888777 4666654 48888888888888888888888 88888888888
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~ 230 (694)
.|+.+++..|.++++|++|+|++|+++.+++..|..+++|++|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888888888888888888888888888888778888888888888887764
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=146.41 Aligned_cols=131 Identities=26% Similarity=0.388 Sum_probs=108.5
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.+++++++++.+|..+. ++|++|++++|.++.++...|.++. +|++|++++|.++.+++..|..+ ++|++|++++|
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N 86 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHEN 86 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCC-CccCEEECCCC
Confidence 46677778888876554 5788899988888888877776654 49999999999998888878888 89999999999
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV 233 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~ 233 (694)
.++++++..|.++++|++|++++|+++++++..|..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9988888888888999999999999988888878888889999999998876544
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=2.2e-17 Score=188.74 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=73.3
Q ss_pred CCCCcEEeccCCcccchhh-hhhccCcccccccCCCCcCCCCCCCCCCCCccccceeecc---------CCccccccccc
Q psy8879 215 LVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA---------HNQFSSVRRGA 284 (694)
Q Consensus 215 L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls---------~N~L~~i~~~~ 284 (694)
+++|++|++++|.+++... ..+..+++|+.|++++| +.+...+.....+++|++|++. .+.++......
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 4566666666666543322 22445566666666655 2210001111234556666552 23333222111
Q ss_pred c-cCCcccceecccCCccccccchhhh-cccccccccCC--C----Cccccccc-----cchhcccccCeeecCCCCCCC
Q psy8879 285 L-AGLDKLTSLSCHHNQIDVLEDHSFR-ALSTLSHLDLA--H----NRIVAVSG-----ASLAHLSNLTTLDLSHNFLRA 351 (694)
Q Consensus 285 ~-~~L~~L~~L~Ls~N~L~~i~~~~f~-~l~~L~~L~Ls--~----N~L~~i~~-----~~f~~l~~L~~L~Ls~N~L~~ 351 (694)
+ .++++|++|.+..|.++......+. .+++|+.|+++ + |.+++.+. ..+..+++|+.|+|++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 2 2355666666555555543333332 35566666665 3 34442211 1244556666666655 4443
Q ss_pred cChhhhCC-CCCCCEEEccCCCCC
Q psy8879 352 LTQDLITP-LKSLQELRLDDNDIS 374 (694)
Q Consensus 352 l~~~~~~~-l~~L~~L~Ls~N~L~ 374 (694)
.....+.. +++|+.|+|++|.++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSS
T ss_pred HHHHHHHHhchhccEeeccCCCCc
Confidence 32222322 556666666666654
No 129
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.63 E-value=1.3e-15 Score=163.01 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=70.4
Q ss_pred EEeccCC-cccchhhhhhccCcccccccCCC-CcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceeccc
Q psy8879 220 VLRLQGN-RLTVSVVAALQGLRSVTDLDLSH-NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297 (694)
Q Consensus 220 ~L~Ls~N-~l~~~~~~~~~~L~~L~~L~Ls~-N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls 297 (694)
.++++++ +++. +|. +..+++|++|+|++ |.+.+ +++..|..+++|+.|+|++|+|+++++..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 6663 455 66667777777774 66664 435566777777777777777777776667777777777777
Q ss_pred CCccccccchhhhcccccccccCCCCccccc
Q psy8879 298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328 (694)
Q Consensus 298 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i 328 (694)
+|+|+.+++..|..++ |+.|+|.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 7777777666666555 77777777776643
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.7e-18 Score=196.58 Aligned_cols=120 Identities=27% Similarity=0.300 Sum_probs=62.1
Q ss_pred cccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321 (694)
Q Consensus 242 L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls 321 (694)
|+.|++++|.+++ + |. +..+++|+.|+|++|.++.+|. .+.++++|+.|+|++|.|+.++ .|..+++|+.|+|+
T Consensus 443 L~~L~Ls~n~l~~-l-p~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV-L-CH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS-C-CC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC-C-cC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 5555555555554 2 33 5555555555555555554432 4555555555555555555543 45555555555555
Q ss_pred CCcccccc-ccchhcccccCeeecCCCCCCCcChh---hhCCCCCCCEEE
Q psy8879 322 HNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQD---LITPLKSLQELR 367 (694)
Q Consensus 322 ~N~L~~i~-~~~f~~l~~L~~L~Ls~N~L~~l~~~---~~~~l~~L~~L~ 367 (694)
+|+|+++. |..+..+++|+.|+|++|.++++++. .+..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55555554 45555555555555555555554431 122245555554
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=7.7e-16 Score=148.41 Aligned_cols=133 Identities=25% Similarity=0.360 Sum_probs=116.4
Q ss_pred ccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecC
Q psy8879 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345 (694)
Q Consensus 266 ~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls 345 (694)
..+.+++++|.++.++... .++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++++..|.++++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999887543 2789999999999999999899999999999999999999999999999999999999
Q ss_pred CCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccccc--c-----CCccCccccC
Q psy8879 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHSTL--L-----IPVMLSLCTR 413 (694)
Q Consensus 346 ~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~~~--~-----~~~~~~~C~~ 413 (694)
+|+|+++++..|..+++|+.|+|++|+|+ |+|. +.|+..|++... + .+...+.|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------------c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~ 150 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD------------CACSDILYLSRWISQHPGLVFGYLNLDPDSARCSG 150 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC------------TTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC------------CCchhHHHHHHHHHhCcceeeccccCCcccceeCC
Confidence 99999999999999999999999999999 9995 999999996322 2 2345677864
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.3e-15 Score=145.63 Aligned_cols=138 Identities=26% Similarity=0.290 Sum_probs=110.3
Q ss_pred CcccccccCCCCcCC-CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879 239 LRSVTDLDLSHNLLA-GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317 (694)
Q Consensus 239 L~~L~~L~Ls~N~l~-~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 317 (694)
.++|+.|++++|.+. +.+ |..+..+++|+.|++++|.++++ ..+..+++|++|++++|.++...+..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 344 55577788888888888888877 56778888888888888888766667777888888
Q ss_pred ccCCCCccccccc-cchhcccccCeeecCCCCCCCcCh---hhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879 318 LDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDDNDISMEPEC 379 (694)
Q Consensus 318 L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~---~~~~~l~~L~~L~Ls~N~L~~l~~~ 379 (694)
|++++|++++++. ..+..+++|+.|++++|.++++++ ..+..+++|+.|++++|.+..+|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8888888888754 678888899999999999988887 5788889999999999988877653
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=3.4e-16 Score=184.44 Aligned_cols=189 Identities=22% Similarity=0.204 Sum_probs=112.8
Q ss_pred EccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcc
Q psy8879 149 GLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228 (694)
Q Consensus 149 ~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l 228 (694)
++..|.+. +++..|..+ +.|+.|+|++|.+..++...+ ++++|++|+|++|.|+.++ ..|..+++|++|+|++|++
T Consensus 207 ~~~~n~~~-~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDD-QLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ----------------CC-CCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCC
T ss_pred ccccccee-cChhhhccC-CCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcC
Confidence 33344444 445567777 889999999998888776544 7888999999999988664 5588889999999999998
Q ss_pred cchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc-ccceecccCCccccccch
Q psy8879 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD-KLTSLSCHHNQIDVLEDH 307 (694)
Q Consensus 229 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~-~L~~L~Ls~N~L~~i~~~ 307 (694)
+ .+|..|.++++|++|+|++|.+.. + |..|..+++|+.|+|++|.+++.++..+..+. .+..|+|++|.++...+
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~~-l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p- 358 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVTT-L-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP- 358 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCCC-C-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_pred C-ccChhhcCCCCCCEEECCCCCCCc-c-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-
Confidence 8 568888889999999999998874 5 66689999999999999999988777665543 23447888998876554
Q ss_pred hhhcccccccccCCCC--------ccccccccchhcccccCeeecCCCCCC
Q psy8879 308 SFRALSTLSHLDLAHN--------RIVAVSGASLAHLSNLTTLDLSHNFLR 350 (694)
Q Consensus 308 ~f~~l~~L~~L~Ls~N--------~L~~i~~~~f~~l~~L~~L~Ls~N~L~ 350 (694)
..|+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 359 -----~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 359 -----HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----CC-----------------------------------------CCC
T ss_pred -----cccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 34667777776 344444444555666666777777654
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=2.6e-15 Score=145.34 Aligned_cols=119 Identities=26% Similarity=0.396 Sum_probs=108.7
Q ss_pred cceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCC
Q psy8879 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346 (694)
Q Consensus 267 L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~ 346 (694)
-+.+++++|.++.++.... ++|++|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|.++++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3678999999988876432 7899999999999999988999999999999999999999888899999999999999
Q ss_pred CCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccc
Q psy8879 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHS 400 (694)
Q Consensus 347 N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~ 400 (694)
|+|+++++..|..+++|+.|+|++|+|. |+|. +.|+..|+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~------------c~~~~~~~l~~~~~~ 133 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD------------CECRDIMYLRNWVAD 133 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC------------TTBGGGHHHHHHHHH
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc------------cccccHHHHHHHHHh
Confidence 9999999988999999999999999999 9996 8999999863
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.1e-17 Score=189.33 Aligned_cols=182 Identities=24% Similarity=0.278 Sum_probs=134.6
Q ss_pred CCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCc-------------ccchhhhhhccCccccccc-CCCCcCCCCC
Q psy8879 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR-------------LTVSVVAALQGLRSVTDLD-LSHNLLAGPL 256 (694)
Q Consensus 191 L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~-------------l~~~~~~~~~~L~~L~~L~-Ls~N~l~~~i 256 (694)
+++|+.|+|++|+++.+ |..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.. +
T Consensus 348 ~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-L 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred CccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-h
Confidence 44555555555555444 2334455555555554432 3455666777777777777 45443321 0
Q ss_pred CC-----CCCCC--ccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccccc
Q psy8879 257 GP-----STVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329 (694)
Q Consensus 257 ~p-----~~~~~--l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~ 329 (694)
.. ..+.. ...|+.|+|++|.+++++. +.++++|+.|+|++|.|+.+|. .|+.+++|+.|+|++|+|++++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc
Confidence 00 00011 1258999999999999864 8999999999999999998865 7999999999999999999975
Q ss_pred ccchhcccccCeeecCCCCCCCcC-hhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879 330 GASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMEPEC 379 (694)
Q Consensus 330 ~~~f~~l~~L~~L~Ls~N~L~~l~-~~~~~~l~~L~~L~Ls~N~L~~l~~~ 379 (694)
.+.++++|+.|+|++|+|++++ +..+..+++|+.|+|++|+++++|+.
T Consensus 503 --~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp --GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred --ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 7899999999999999999997 77899999999999999999987764
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=4.4e-15 Score=141.99 Aligned_cols=82 Identities=27% Similarity=0.286 Sum_probs=37.0
Q ss_pred CccEEEccCCCCC--CCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEE
Q psy8879 144 PLQALGLPNNLLS--VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL 221 (694)
Q Consensus 144 ~L~~L~Ls~N~L~--~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L 221 (694)
+|++|++++|.++ .+|. .+..+ ++|++|++++|.++.+ ..|..+++|++|++++|++++..+..+..+++|++|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~-~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEG-LTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCSEEECCSCBCBTTBCSS-CCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cCCEEECCCCCCChhhHHH-HHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3555555555544 3333 23444 4455555555544444 334444444444444444444333333334444444
Q ss_pred eccCCccc
Q psy8879 222 RLQGNRLT 229 (694)
Q Consensus 222 ~Ls~N~l~ 229 (694)
++++|+++
T Consensus 101 ~Ls~N~l~ 108 (168)
T 2ell_A 101 NLSGNKLK 108 (168)
T ss_dssp ECBSSSCC
T ss_pred eccCCccC
Confidence 44444443
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.2e-14 Score=136.03 Aligned_cols=129 Identities=26% Similarity=0.305 Sum_probs=91.5
Q ss_pred CcccccccCCCCcCC-CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879 239 LRSVTDLDLSHNLLA-GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317 (694)
Q Consensus 239 L~~L~~L~Ls~N~l~-~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~ 317 (694)
.++|+.|++++|.+. +.+ |..+..+++|+.|++++|.++++ ..+.++++|++|++++|.++...+..+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 356667777777666 334 45566677777777777777766 45677777777777777777755556666777888
Q ss_pred ccCCCCcccccc-ccchhcccccCeeecCCCCCCCcCh---hhhCCCCCCCEEEccC
Q psy8879 318 LDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDD 370 (694)
Q Consensus 318 L~Ls~N~L~~i~-~~~f~~l~~L~~L~Ls~N~L~~l~~---~~~~~l~~L~~L~Ls~ 370 (694)
|++++|++++++ +..+..+++|+.|++++|.++++++ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888777763 3667777888888888888877776 5677777888877753
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=7.1e-14 Score=152.50 Aligned_cols=261 Identities=17% Similarity=0.267 Sum_probs=124.3
Q ss_pred CeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 96 RVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
.|+.+.+.. +++.++. .|..+.+|+.+++.++ ++.|+..+|.+... |+.+.+..+ +..+...+|.+. ..++ +.
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~-L~~i~~p~~-l~~i~~~aF~~~-~~~~-~~ 145 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYA-LKSILLPLM-LKSIGVEAFKGC-DFKE-IT 145 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT-CCCCCCCTT-CCEECTTTTTTC-CCSE-EE
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhccccc-chhhcccCc-eeeecceeeecc-cccc-cc
Confidence 677777753 4666643 3555677777777543 67777777766543 555554432 333333333332 1111 11
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC-
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA- 253 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~- 253 (694)
+ .+.+..+...+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+...
T Consensus 146 ~-~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i 222 (394)
T 4fs7_A 146 I-PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL 222 (394)
T ss_dssp C-CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE
T ss_pred c-CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe
Confidence 1 11122233344455555555555432 33344444555555555554433 22223333444444443333222100
Q ss_pred -------------------CCCCCCCCCCccccceeeccCCcccccccccc---------------------cCCcccce
Q psy8879 254 -------------------GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL---------------------AGLDKLTS 293 (694)
Q Consensus 254 -------------------~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~---------------------~~L~~L~~ 293 (694)
..+....+..+..|+.+.+..+. ..+....| .++.+|+.
T Consensus 223 ~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTE 301 (394)
T ss_dssp CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCE
T ss_pred ehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeeccccccccccccc
Confidence 01234455566666666665542 23333444 44445555
Q ss_pred ecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEcc
Q psy8879 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369 (694)
Q Consensus 294 L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls 369 (694)
+.+.++ ++.+...+|.++.+|+.++|.+ .++.+...+|.++.+|+.+++..| ++.+...+|.++++|+.+++.
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 554332 4445555555555555555542 255555555555555555555444 555555555555555555554
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.3e-14 Score=135.94 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=36.2
Q ss_pred CccEEEccCCCCC-CCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccC
Q psy8879 169 NLDRLDLSHNQLY-KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247 (694)
Q Consensus 169 ~L~~L~Ls~N~L~-~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~L 247 (694)
+|++|++++|.++ +..+..+..+++|++|++++|.++++ ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 11122344444444444444444444 23444444444444444444434444444444444444
Q ss_pred CCCcCC
Q psy8879 248 SHNLLA 253 (694)
Q Consensus 248 s~N~l~ 253 (694)
++|.+.
T Consensus 96 s~N~i~ 101 (149)
T 2je0_A 96 SGNKIK 101 (149)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 444443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.7e-14 Score=137.88 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=78.8
Q ss_pred ccCcccccccCCCCcCCCCCCCCCCCCc-cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315 (694)
Q Consensus 237 ~~L~~L~~L~Ls~N~l~~~i~p~~~~~l-~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L 315 (694)
..+.+|+.|++++|.+.+ + +. +..+ ++|+.|++++|.++++ ..+.++++|++|++++|.|+.+++..|..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-I-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-C-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCch-h-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 334455555555555543 2 22 2222 3666666666666655 345666666666666666666665555666666
Q ss_pred ccccCCCCccccccc-cchhcccccCeeecCCCCCCCcChh---hhCCCCCCCEEEccCCCCC
Q psy8879 316 SHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQD---LITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 316 ~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~~---~~~~l~~L~~L~Ls~N~L~ 374 (694)
+.|++++|+++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666666543 3556666667777777766665543 4556667777777666543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.3e-13 Score=130.98 Aligned_cols=104 Identities=28% Similarity=0.387 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.++|++|+++.+|..+. .+ |++|+|++|.|+.+++..|.++ ++|++|+|++|
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~-------------------------l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N 64 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TT-------------------------TQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNN 64 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TT-------------------------CSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS
T ss_pred EEEeCCCCcCccCccCC--CC-------------------------CcEEEcCCCcCCccChhhhcCc-ccCCEEECCCC
Confidence 57778888877776542 34 4555555555555555455555 55666666666
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~ 230 (694)
+|+.+++..|.++++|++|+|++|++++++++.|..+++|++|+|++|.+..
T Consensus 65 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6665555555566666666666666666655556666666666666665553
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=3.9e-13 Score=146.62 Aligned_cols=264 Identities=15% Similarity=0.252 Sum_probs=182.1
Q ss_pred CCCCC-ccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc
Q psy8879 107 VTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185 (694)
Q Consensus 107 l~~lp-~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~ 185 (694)
++.+. ..|..+.+|+++.+.. .++.|+..+|.+... |+.++|.++ ++.++..+|.++ .+|+.+.+.. .+..+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~-L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~-~l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSK-LEIINIPDS-VKMIGRCTFSGC-YALKSILLPL-MLKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTT-CCEECCCTT-CCEECTTTTTTC-TTCCCCCCCT-TCCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCC-CcEEEeCCC-ceEccchhhccc-ccchhhcccC-ceeeecc
Confidence 34443 3466778899999964 588999999988754 999999765 888888889888 8898887764 4677777
Q ss_pred ccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcc
Q psy8879 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS 265 (694)
Q Consensus 186 ~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~ 265 (694)
.+|.+...++... .+.+..+...+|.++.+|+.+.+.++. .......|.++.+|+.+.+..+ +. .+....|.++.
T Consensus 134 ~aF~~~~~~~~~~--~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~ 208 (394)
T 4fs7_A 134 EAFKGCDFKEITI--PEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECI 208 (394)
T ss_dssp TTTTTCCCSEEEC--CTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCT
T ss_pred eeeeccccccccc--CccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccc
Confidence 8888775543332 233456667889999999999998764 4466778999999999999877 33 25566777777
Q ss_pred ccceeeccCCc---------------------ccccccccccCCcccceecccCCccc--------------------cc
Q psy8879 266 SLKVLSIAHNQ---------------------FSSVRRGALAGLDKLTSLSCHHNQID--------------------VL 304 (694)
Q Consensus 266 ~L~~L~Ls~N~---------------------L~~i~~~~~~~L~~L~~L~Ls~N~L~--------------------~i 304 (694)
.|+.+.+..+. ++.+....|.++..|+.+.+..+... .+
T Consensus 209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE
T ss_pred ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee
Confidence 77766654432 23344456677777777777654321 12
Q ss_pred cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383 (694)
Q Consensus 305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 383 (694)
+..+|.++.+|+.+.+.++ ++.+...+|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.++...|.+
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 3344555666666666543 66666677777777777777543 67777777777777777777655 66666666643
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.1e-14 Score=134.18 Aligned_cols=105 Identities=24% Similarity=0.328 Sum_probs=41.7
Q ss_pred CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhh--hhccCccccccc
Q psy8879 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA--ALQGLRSVTDLD 246 (694)
Q Consensus 169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~--~~~~L~~L~~L~ 246 (694)
+|++|++++|.++++ ..|.++++|++|++++|+++++++..|..+++|++|++++|+++. .+. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 344444444444333 233334444444444444443333333334444444444444432 121 333444444444
Q ss_pred CCCCcCCCCCCCC----CCCCccccceeeccCCccc
Q psy8879 247 LSHNLLAGPLGPS----TVPRLSSLKVLSIAHNQFS 278 (694)
Q Consensus 247 Ls~N~l~~~i~p~----~~~~l~~L~~L~Ls~N~L~ 278 (694)
+++|.+.. + +. .+..+++|+.|++++|.+.
T Consensus 120 l~~N~i~~-~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTN-K-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGG-S-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCC-c-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 44444432 1 22 1344444555555444443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=5.5e-13 Score=128.95 Aligned_cols=103 Identities=21% Similarity=0.364 Sum_probs=57.3
Q ss_pred EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
.+++++++++.+|..+. .+|+.|++++|.|+.+.+ ..|.++ ++|++|+|++|
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~-------------------------~~~~~l-~~L~~L~Ls~N 67 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEP-------------------------GVFDHL-VNLQQLYFNSN 67 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCT-------------------------TTTTTC-TTCCEEECCSS
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCH-------------------------HHhcCC-cCCCEEECCCC
Confidence 57888888888876553 445555555555554444 444444 45555555555
Q ss_pred CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCccc
Q psy8879 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229 (694)
Q Consensus 179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~ 229 (694)
+|+.+++..|.++++|++|+|++|+|+++++..|..+++|++|+|++|.+.
T Consensus 68 ~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555555444555555555555555555555544555555555555555554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=4.2e-12 Score=138.42 Aligned_cols=264 Identities=13% Similarity=0.226 Sum_probs=153.4
Q ss_pred eeEEEcCCCCCCCCC-ccccCCCCccEEEccCC---CCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879 97 VSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSG---ELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172 (694)
Q Consensus 97 L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n---~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~ 172 (694)
|+.+.+.. .++.+. ..|..+.+|+.+.+..+ .++.|+..+|.+... |+.+.+..+ ++.++..+|..+ .+|+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~-L~~i~~~~~-~~~I~~~aF~~c-~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSE-LTDIPILDS-VTEIDSEAFHHC-EELDT 141 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTT-CCBCGGGTT-CSEECTTTTTTC-TTCCE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhccc-ceeeccCCc-cceehhhhhhhh-ccccc
Confidence 55555543 355553 34555667777777554 366666777766543 666665543 566666666666 67777
Q ss_pred EEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252 (694)
Q Consensus 173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l 252 (694)
+.+.. .+..+....|.++.+|+.+.+.++ ++.+...+|.. .+|+.+.+..+-.. ....+|.++.++.......+..
T Consensus 142 i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccc
Confidence 77753 355566666777777777776543 55555555654 45666666543221 2333444444443332221111
Q ss_pred C-----------------------------------CCCCCCCCCCccccceeeccCCcccccccccccCCcccceeccc
Q psy8879 253 A-----------------------------------GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297 (694)
Q Consensus 253 ~-----------------------------------~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls 297 (694)
. ..+....|..+.+|+.+.+..+ +..+...+|.++++|+.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC
Confidence 0 0122445566666666666543 344555666666677766664
Q ss_pred CCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879 298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372 (694)
Q Consensus 298 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~ 372 (694)
+.++.++..+|.++.+|+.++|..+ ++.+...+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+++.+|.
T Consensus 297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 297 -SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred -CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 4566666667777777777777543 66666667777777777777543 666666677777777777766653
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.8e-15 Score=147.70 Aligned_cols=132 Identities=26% Similarity=0.333 Sum_probs=82.8
Q ss_pred hhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccc
Q psy8879 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314 (694)
Q Consensus 235 ~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~ 314 (694)
.+..+++|++|++++|.+.+ + | .+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l-~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-I-S-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-C-C-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-c-c-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence 56666666666666666665 3 3 56666666666666666665542 3445566777777777766654 4666677
Q ss_pred cccccCCCCccccccc-cchhcccccCeeecCCCCCCCcCh----------hhhCCCCCCCEEEccCCCCC
Q psy8879 315 LSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ----------DLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 315 L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~----------~~~~~l~~L~~L~Ls~N~L~ 374 (694)
|+.|++++|++++++. ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777766543 456666777777777776655432 2355677777765 55554
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=3.1e-15 Score=147.36 Aligned_cols=132 Identities=26% Similarity=0.308 Sum_probs=74.5
Q ss_pred cCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCccc
Q psy8879 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291 (694)
Q Consensus 212 f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L 291 (694)
|..+++|++|++++|++++ +| .+.++++|++|++++|.+.+ + |..+..+++|+.|++++|++++++ .+.++++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-I-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-C-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-c-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 4444444444444444443 22 44444455555555555542 2 334444556666666666666653 35566666
Q ss_pred ceecccCCccccccc-hhhhcccccccccCCCCcccccccc----------chhcccccCeeecCCCCCCC
Q psy8879 292 TSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSGA----------SLAHLSNLTTLDLSHNFLRA 351 (694)
Q Consensus 292 ~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~i~~~----------~f~~l~~L~~L~Ls~N~L~~ 351 (694)
++|++++|+++.++. ..+..+++|+.|++++|++.+..+. .+..+++|+.|| +|.++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 666666666665543 4566666777777777776555433 366777888776 555543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1e-11 Score=135.33 Aligned_cols=263 Identities=13% Similarity=0.279 Sum_probs=199.5
Q ss_pred CCCCcc-ccCCC-CccEEEccCCCCCCCCcchhcCCCCCccEEEccCCC---CCCCCccccccCCCCccEEEccCCCCCC
Q psy8879 108 TVLPGK-FLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL---LSVVPTSALAPLAPNLDRLDLSHNQLYK 182 (694)
Q Consensus 108 ~~lp~~-~~~~~-~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~---L~~lp~~~~~~l~~~L~~L~Ls~N~L~~ 182 (694)
+.+.+. |..+. .|+++.+.. .++.|+..+|.+... |+.+.+..|. ++.+...+|.++ .+|+.+.+..+ ++.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~-L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTS-LKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTE 127 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTT-CCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSE
T ss_pred eEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCcc-CceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cce
Confidence 344433 44443 599999965 489999999988764 9999998764 888889999998 89998888654 788
Q ss_pred CCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCC
Q psy8879 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP 262 (694)
Q Consensus 183 i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~ 262 (694)
+...+|.++.+|+.+.+.. .+..+...+|..+.+|+.+.+.++ ++.+...+|.. ..|+.+.+..+... +....|.
T Consensus 128 I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~--i~~~af~ 202 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR--IGTNAFS 202 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE--ECTTTTT
T ss_pred ehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc--cccchhh
Confidence 8888999999999999964 467788888999999999999765 44455566754 57888887665432 3355566
Q ss_pred CccccceeeccCC------------------------------------cccccccccccCCcccceecccCCccccccc
Q psy8879 263 RLSSLKVLSIAHN------------------------------------QFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306 (694)
Q Consensus 263 ~l~~L~~L~Ls~N------------------------------------~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~ 306 (694)
.+.+++......+ .++.+...+|.++.+|+.+.+.++ +..+..
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~ 281 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGT 281 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECT
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecC
Confidence 6666555443222 233344557788888888888654 456777
Q ss_pred hhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383 (694)
Q Consensus 307 ~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 383 (694)
.+|.+++.|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+.. .++.++...|.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~ 355 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSN 355 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhC
Confidence 888888999998885 5688888889999999999999764 8888888899999999999964 488888888854
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=5e-11 Score=128.84 Aligned_cols=272 Identities=15% Similarity=0.210 Sum_probs=182.4
Q ss_pred CeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879 96 RVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174 (694)
Q Consensus 96 ~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~ 174 (694)
+|+.+.+. .+++.+++ .|..+.+|+++.|.. .++.|+..+|.+. +|+.+.+.. .++.+...+|... +|+.+.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~--~L~~i~ 119 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGT--DLDDFE 119 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTC--CCSEEE
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC--CCceEECCc-eeeEeccceeccC--Cccccc
Confidence 45555554 34555543 355667777777753 3777777777764 377776654 3666666666653 677777
Q ss_pred ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCccc-------------------------
Q psy8879 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT------------------------- 229 (694)
Q Consensus 175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~------------------------- 229 (694)
+..+ ++.+....|.+. +|+.+.+.. .++.+...+|....+++.+.+..+...
T Consensus 120 lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 7543 445555555543 455554433 244455555555555555544432211
Q ss_pred ----------chhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCC
Q psy8879 230 ----------VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299 (694)
Q Consensus 230 ----------~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N 299 (694)
......+....+|+.+.+..+- . .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~- 272 (379)
T 4h09_A 197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA- 272 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-
T ss_pred cccccccceeEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-
Confidence 1223344445566666665442 2 244667778888888888765 7778888888888888888864
Q ss_pred ccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379 (694)
Q Consensus 300 ~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~ 379 (694)
.+..++..+|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+.+.+..+ ++.|...
T Consensus 273 ~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 273 KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG 350 (379)
T ss_dssp CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence 477888888999999999999888888888888999999999998754 88888888988999998888654 7778877
Q ss_pred cccC
Q psy8879 380 IYVG 383 (694)
Q Consensus 380 ~f~~ 383 (694)
.|.+
T Consensus 351 aF~~ 354 (379)
T 4h09_A 351 AFEG 354 (379)
T ss_dssp TTTT
T ss_pred HhhC
Confidence 7744
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1.6e-12 Score=141.14 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=114.7
Q ss_pred CCCccEEEecCCCCCCCCccccCC-----CCCCcEEeccCCcccchhhhhh-ccCcccccccCCCCcCCCCCCCCCC---
Q psy8879 191 LSSLNFLDLSYNKLMTLSQDCLAP-----LVTLRVLRLQGNRLTVSVVAAL-QGLRSVTDLDLSHNLLAGPLGPSTV--- 261 (694)
Q Consensus 191 L~~L~~L~Ls~N~l~~i~~~~f~~-----L~~L~~L~Ls~N~l~~~~~~~~-~~L~~L~~L~Ls~N~l~~~i~p~~~--- 261 (694)
++.|++|+|++|.++......+.. .++|++|+|++|.++......+ ..+.+|+.|+|++|.+.+. ....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHH
Confidence 357889999999988655443332 2689999999999875544433 3466888999999988632 11222
Q ss_pred --CCccccceeeccCCcccccccc----cccCCcccceecccCCcccccc----chhhhcccccccccCCCCcccccccc
Q psy8879 262 --PRLSSLKVLSIAHNQFSSVRRG----ALAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGA 331 (694)
Q Consensus 262 --~~l~~L~~L~Ls~N~L~~i~~~----~~~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~ 331 (694)
...++|++|+|++|.++..... .+..+++|++|+|++|.|+... ...+...++|+.|+|++|.|++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2356788888888888764322 3456778888888888887543 33456667888888888888765443
Q ss_pred c----hhcccccCeeecCCCCCCCcChhhhC
Q psy8879 332 S----LAHLSNLTTLDLSHNFLRALTQDLIT 358 (694)
Q Consensus 332 ~----f~~l~~L~~L~Ls~N~L~~l~~~~~~ 358 (694)
. +...++|++|+|++|.|+......+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 3 34567888888888888765554443
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=9.5e-13 Score=142.87 Aligned_cols=168 Identities=22% Similarity=0.217 Sum_probs=116.1
Q ss_pred CCccEEEccCCCCCCCCcccccC-----CCCccEEEecCCCCCCCCcccc-CCCCCCcEEeccCCcccchhhhhh-----
Q psy8879 168 PNLDRLDLSHNQLYKLENTSFKG-----LSSLNFLDLSYNKLMTLSQDCL-APLVTLRVLRLQGNRLTVSVVAAL----- 236 (694)
Q Consensus 168 ~~L~~L~Ls~N~L~~i~~~~f~~-----L~~L~~L~Ls~N~l~~i~~~~f-~~L~~L~~L~Ls~N~l~~~~~~~~----- 236 (694)
++|++|+|++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 67888999888887654444332 2688889999888865433322 235678889999988876544444
Q ss_pred ccCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCcccccc----cccccCCcccceecccCCccccccch-
Q psy8879 237 QGLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLEDH- 307 (694)
Q Consensus 237 ~~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~----~~~~~~L~~L~~L~Ls~N~L~~i~~~- 307 (694)
...++|++|+|++|.+++. + +..+..+++|++|+|++|.+++.. ...+...++|++|+|++|.|+.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVL-MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHH-HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHH-HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457788899998887531 1 222355678888999998887643 33456677888999999888754432
Q ss_pred ---hhhcccccccccCCCCccccccccchhcc
Q psy8879 308 ---SFRALSTLSHLDLAHNRIVAVSGASLAHL 336 (694)
Q Consensus 308 ---~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l 336 (694)
.+...++|+.|+|++|.|+......+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 34456888899999998887766655543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=5.9e-10 Score=120.42 Aligned_cols=256 Identities=12% Similarity=0.188 Sum_probs=196.5
Q ss_pred ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCC
Q psy8879 114 FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS 193 (694)
Q Consensus 114 ~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~ 193 (694)
+....+|+++.+. ..++.|+..+|.+... |+.+.|..+ ++.+...+|.+. +|+.+.+.. .++.+...+|.+. +
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~-L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYN-MTKVTVAST-VTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTT-CCEEEECTT-CCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTC-C
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCC-CCEEEeCCc-ceEechhhhcCC--CCceEECCc-eeeEeccceeccC-C
Confidence 4445679999996 4589999999998764 999999754 899999999986 688888864 4788888889775 8
Q ss_pred ccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC--------------------
Q psy8879 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA-------------------- 253 (694)
Q Consensus 194 L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~-------------------- 253 (694)
|+.+.+.++ +..+...+|... +|+.+.+..+ ++......|....+++.+.+..+...
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 999999764 666777777764 6777766554 33344556666666665554432210
Q ss_pred --------------CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccccc
Q psy8879 254 --------------GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319 (694)
Q Consensus 254 --------------~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~ 319 (694)
..+....+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 0112334555667777777544 66777788899999999999765 8888889999999999999
Q ss_pred CCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383 (694)
Q Consensus 320 Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 383 (694)
+.. .+..+...+|.++.+|+.+.+.++.++.+....|.++.+|+.+.|.. .++.|+...|.+
T Consensus 270 l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~ 331 (379)
T 4h09_A 270 FYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKN 331 (379)
T ss_dssp ECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred ccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhC
Confidence 965 48888888999999999999999999999999999999999999975 488888888853
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.70 E-value=1.3e-08 Score=93.50 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=70.6
Q ss_pred ccccCCCCccc--cccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccc
Q psy8879 316 SHLDLAHNRIV--AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393 (694)
Q Consensus 316 ~~L~Ls~N~L~--~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~ 393 (694)
..++.+++.++ .++.. +. ++|+.|+|++|+|+.++.+.|..+++|+.|+|++|+|. |||++.|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~------------CdC~l~~ 75 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR------------CDCRLVP 75 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB------------CSGGGHH
T ss_pred CEEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee------------ccCccHH
Confidence 35677777777 66432 22 47899999999999999999999999999999999999 9999999
Q ss_pred ccccccccc-cCCccCccccCCcccce
Q psy8879 394 SGVWRHSTL-LIPVMLSLCTRSSVVTR 419 (694)
Q Consensus 394 ~~~wl~~~~-~~~~~~~~C~~~~~~~~ 419 (694)
|..|+.... ......+.|++|....+
T Consensus 76 l~~wl~~~~~~~~~~~~~C~~P~~l~g 102 (130)
T 3rfe_A 76 LRAWLAGRPERAPYRDLRCVAPPALRG 102 (130)
T ss_dssp HHHHHHTSSCSGGGTTCBCCBSTTTTT
T ss_pred HHHHHHhCcccccccCcEeCcChHHcC
Confidence 999997543 22345789988765444
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=2.7e-08 Score=107.36 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=36.5
Q ss_pred cccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhc--cCcccccccCC
Q psy8879 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ--GLRSVTDLDLS 248 (694)
Q Consensus 187 ~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~--~L~~L~~L~Ls 248 (694)
.+..+|+|+.|+|++|.-..+++ +. +++|++|++..+.+.......+. .+++|+.|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34566778888887763112222 32 67888888887777654444443 56777777764
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=4.6e-08 Score=105.47 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=30.4
Q ss_pred ccccccccCCCCccccccccchh---cccccCeeecCCCCCCCcChhh----hCCCCCCCEEEccCCCCC
Q psy8879 312 LSTLSHLDLAHNRIVAVSGASLA---HLSNLTTLDLSHNFLRALTQDL----ITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 312 l~~L~~L~Ls~N~L~~i~~~~f~---~l~~L~~L~Ls~N~L~~l~~~~----~~~l~~L~~L~Ls~N~L~ 374 (694)
+++|+.|+|.+|.+.+.....+. .+++|+.|+|+.|.+.+..... +..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45555566555555432222221 2455666666666555422111 123455666666665554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=5.9e-07 Score=87.25 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=47.2
Q ss_pred cCCcccceecccCCcccccc----chhhhcccccccccCCCCcccccc----ccchhcccccCeeec--CCCCCCCcC--
Q psy8879 286 AGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVS----GASLAHLSNLTTLDL--SHNFLRALT-- 353 (694)
Q Consensus 286 ~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~L--s~N~L~~l~-- 353 (694)
...++|++|+|++|.|+... ...+...+.|++|+|++|.|.... ...+...++|+.|+| ++|.+....
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 33445555555555554322 122333455666666666665532 233444566777777 666665432
Q ss_pred --hhhhCCCCCCCEEEccCCCCC
Q psy8879 354 --QDLITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 354 --~~~~~~l~~L~~L~Ls~N~L~ 374 (694)
.+.+...++|+.|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 233444566777777776654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=2.6e-07 Score=95.26 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=71.0
Q ss_pred cCCCCcCCCCCCCCCCCCccccce--eeccCCcccccc---cccccCCcccceecccCCccccccc--hhhhcccccccc
Q psy8879 246 DLSHNLLAGPLGPSTVPRLSSLKV--LSIAHNQFSSVR---RGALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHL 318 (694)
Q Consensus 246 ~Ls~N~l~~~i~p~~~~~l~~L~~--L~Ls~N~L~~i~---~~~~~~L~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L 318 (694)
...+|...+.++...+...+.|.. ++++.|....+. .....++++|+.|+|++|+|+.++. ..+..+++|+.|
T Consensus 122 ~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L 201 (267)
T 3rw6_A 122 SKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201 (267)
T ss_dssp HHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEE
T ss_pred HhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEE
Confidence 334444444333344555556665 666666443332 1122456777888888887777653 455677788888
Q ss_pred cCCCCccccccccchhccc--ccCeeecCCCCCCC-cC------hhhhCCCCCCCEEE
Q psy8879 319 DLAHNRIVAVSGASLAHLS--NLTTLDLSHNFLRA-LT------QDLITPLKSLQELR 367 (694)
Q Consensus 319 ~Ls~N~L~~i~~~~f~~l~--~L~~L~Ls~N~L~~-l~------~~~~~~l~~L~~L~ 367 (694)
+|++|+|+++. .+..+. +|++|+|++|.+.+ ++ ...+..+++|+.||
T Consensus 202 ~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 202 NLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 88888877762 233333 77788888887764 22 13355677777764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=8.5e-07 Score=86.10 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=58.5
Q ss_pred cccCCCCCCcEEeccCC-cccch----hhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccccc
Q psy8879 210 DCLAPLVTLRVLRLQGN-RLTVS----VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA 284 (694)
Q Consensus 210 ~~f~~L~~L~~L~Ls~N-~l~~~----~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~ 284 (694)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.+.- .. .....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g-~~--------------------~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AF--------------------ALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HH--------------------HHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH-HH--------------------HHHHH
Confidence 34556677777777777 66542 2233344455555555555553210 00 00112
Q ss_pred ccCCcccceecccCCcccccc----chhhhcccccccccC--CCCccccccc----cchhcccccCeeecCCCCCC
Q psy8879 285 LAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDL--AHNRIVAVSG----ASLAHLSNLTTLDLSHNFLR 350 (694)
Q Consensus 285 ~~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~L--s~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~ 350 (694)
+...++|++|+|++|.|+... ...+...+.|++|+| ++|.|..... ..+...++|+.|+|++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 223344555555555554321 123344455666666 5566554322 22334466666666666553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=9e-06 Score=83.66 Aligned_cols=89 Identities=27% Similarity=0.353 Sum_probs=67.7
Q ss_pred ccCCcccce--ecccCCcccccc---chhhhcccccccccCCCCccccccc--cchhcccccCeeecCCCCCCCcCh-hh
Q psy8879 285 LAGLDKLTS--LSCHHNQIDVLE---DHSFRALSTLSHLDLAHNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQ-DL 356 (694)
Q Consensus 285 ~~~L~~L~~--L~Ls~N~L~~i~---~~~f~~l~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L~Ls~N~L~~l~~-~~ 356 (694)
|...+.|.. ++++.|....+. .....++++|+.|+|++|+|+++.+ ..+..+++|+.|+|++|+|+++.. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 445566666 777888654433 2233568999999999999999754 567789999999999999998732 23
Q ss_pred hCCCCCCCEEEccCCCCC
Q psy8879 357 ITPLKSLQELRLDDNDIS 374 (694)
Q Consensus 357 ~~~l~~L~~L~Ls~N~L~ 374 (694)
+..+ +|++|+|++|++.
T Consensus 217 l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp GTTS-CCSEEECTTSTTG
T ss_pred cccC-CcceEEccCCcCc
Confidence 3334 9999999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=3.5e-05 Score=74.11 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=14.3
Q ss_pred ccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178 (694)
Q Consensus 145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N 178 (694)
|+.||++++.++...-..+.++ ++|++|+|++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~-~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGL-QYVEKIRLCKC 95 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTC-SCCCEEEEESC
T ss_pred EeEEeCcCCCccHHHHHHhcCC-CCCCEEEeCCC
Confidence 4444444444443333333333 44444444444
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=3.8e-05 Score=73.82 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=50.8
Q ss_pred cccceeeccCCcccccccccccCCcccceecccCCc-cccccchhhhcc----cccccccCCCCc-cccccccchhcccc
Q psy8879 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRAL----STLSHLDLAHNR-IVAVSGASLAHLSN 338 (694)
Q Consensus 265 ~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l----~~L~~L~Ls~N~-L~~i~~~~f~~l~~ 338 (694)
.+|+.||++++.++...-..+.++++|++|+|++|. |+...-..+..+ ++|++|+|++|. |++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 367777777777766554556677777777777763 544333333332 356677776653 65554455556666
Q ss_pred cCeeecCCCC
Q psy8879 339 LTTLDLSHNF 348 (694)
Q Consensus 339 L~~L~Ls~N~ 348 (694)
|+.|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0021 Score=58.50 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=26.1
Q ss_pred EEEccCCCCC--CCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCC
Q psy8879 147 ALGLPNNLLS--VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204 (694)
Q Consensus 147 ~L~Ls~N~L~--~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l 204 (694)
.++.+++.++ .+|.. ++++|++|+|++|+|+.++...|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~----lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA----FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC----CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC----CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444555554 44432 113455555555555555555555555555555554443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.0012 Score=64.58 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=49.1
Q ss_pred ccCCcccceecccCCccccccc----hhhhcccccccccCCCCcccccccc----chhcccccCeeecCCCCCCCcC---
Q psy8879 285 LAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVSGA----SLAHLSNLTTLDLSHNFLRALT--- 353 (694)
Q Consensus 285 ~~~L~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~i~~~----~f~~l~~L~~L~Ls~N~L~~l~--- 353 (694)
+..-..|++|+|++|.|..... .++..-+.|+.|+|++|.|...... ++..-..|+.|+|++|....+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 4444566666666666653322 2334456677777777777654332 2334456777777755331221
Q ss_pred ----hhhhCCCCCCCEEEccCCC
Q psy8879 354 ----QDLITPLKSLQELRLDDND 372 (694)
Q Consensus 354 ----~~~~~~l~~L~~L~Ls~N~ 372 (694)
.+.+...+.|+.|+++.|.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 2345556777777777654
No 164
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=96.67 E-value=0.0024 Score=62.38 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=44.3
Q ss_pred cccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE----EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 432 ILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV----QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 432 ~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL----~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
..++....+.|.+ +.|..+++... .......++.+..+|++ +.+++.+|+|.|+|.|+|..++++.++
T Consensus 118 v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~-~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~ 196 (203)
T 4fa8_A 118 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP-APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVY 196 (203)
T ss_dssp SSCSCCEEEEEEEEEESCCEEEECCC-------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEE
T ss_pred EcCCCEEEEEEEcCCCCCCEEEEEECCeeec-CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 3445556788876 66666555443 22234567778888887 468999999999999999999987665
No 165
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=96.42 E-value=0.0036 Score=55.19 Aligned_cols=36 Identities=6% Similarity=-0.214 Sum_probs=31.5
Q ss_pred EeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 461 TSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 461 ~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
.+.|..+..+|+| |.+|+.+|+|.|+|++.+..+..
T Consensus 62 ~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~~~~~~ 98 (111)
T 2qsq_A 62 YSGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVN 98 (111)
T ss_dssp CCSCEEECTTSCEEECSCCGGGCEEEEEEEEETTSCC
T ss_pred cCCcEEEecCCcEEEccCcccCCeEEEEEEEeCCCcE
Confidence 4678888999988 99999999999999999986643
No 166
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=96.42 E-value=0.0018 Score=55.54 Aligned_cols=29 Identities=17% Similarity=-0.080 Sum_probs=24.6
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+++..|+|.|+|.|+|..+.+...+
T Consensus 64 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 93 (100)
T 3knb_A 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATV 93 (100)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEcCCCccCCEEEEEEEEECCCEEEEEE
Confidence 56 899999999999999999888765443
No 167
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=96.17 E-value=0.0025 Score=55.48 Aligned_cols=61 Identities=7% Similarity=-0.173 Sum_probs=38.9
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecc---cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGL---GTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~---gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
++....+.|.. +.|........... ++.+..+ .+| |.+++.+|+|.|+|.|+|..+.+...
T Consensus 27 ~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 98 (107)
T 3knb_B 27 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASE-----RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA 98 (107)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTEECCCCS-----SEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEEEEEecCCEEEEEECccccccee-----eEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEE
Confidence 34455666655 56665554444222 2222222 245 99999999999999999988776544
No 168
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=96.03 E-value=0.0057 Score=51.38 Aligned_cols=29 Identities=3% Similarity=-0.375 Sum_probs=24.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+++..|+|.|+|.|+|..+......
T Consensus 63 ~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 92 (99)
T 1g1c_A 63 ELVIRDVTGEDSASIMVKAINIAGETSSHA 92 (99)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEECCCCcCCCEEEEEEEEECCCcEEEEE
Confidence 56 899999999999999999887665543
No 169
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=95.93 E-value=0.0073 Score=53.01 Aligned_cols=27 Identities=7% Similarity=-0.346 Sum_probs=23.5
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
+| |.+|+.+|+|.|+|.|+|..+....
T Consensus 74 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 101 (116)
T 2kkq_A 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTC 101 (116)
T ss_dssp EEEEEEECGGGCEEEEEEEEETTEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEcCCCeEEE
Confidence 56 9999999999999999998876544
No 170
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.84 E-value=0.0063 Score=51.36 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=40.1
Q ss_pred eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
....+.|.. +.|......... ...+..+..+++| |.+++..|+|.|+|.++|..+.....+
T Consensus 24 ~~~~l~C~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 92 (100)
T 2edj_A 24 GTALLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSA 92 (100)
T ss_dssp SEEEECCEEECSSCCEEEEEESSSEESS----SCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCE
T ss_pred CcEEEEEEEEEcCCCEEEEEECCEECCC----CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEE
Confidence 444556654 566655433321 1233455667778 999999999999999999877654433
No 171
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=95.76 E-value=0.0052 Score=51.84 Aligned_cols=33 Identities=6% Similarity=-0.156 Sum_probs=26.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus 64 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 97 (100)
T 3caf_A 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97 (100)
T ss_dssp GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEE
Confidence 4466 89999999999999999988876554443
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.75 E-value=0.0064 Score=59.33 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=66.5
Q ss_pred ccCCcccceecccCC-cccccc----chhhhcccccccccCCCCccccccccc----hhcccccCeeecCCCCCCCcC--
Q psy8879 285 LAGLDKLTSLSCHHN-QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGAS----LAHLSNLTTLDLSHNFLRALT-- 353 (694)
Q Consensus 285 ~~~L~~L~~L~Ls~N-~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~----f~~l~~L~~L~Ls~N~L~~l~-- 353 (694)
+.+-+.|++|+|++| +|.... ..++..-+.|+.|+|++|+|....... +..-+.|+.|+|++|.|..-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445578889999885 775322 345566789999999999998765544 445689999999999998533
Q ss_pred --hhhhCCCCCCCEEEccCCCC
Q psy8879 354 --QDLITPLKSLQELRLDDNDI 373 (694)
Q Consensus 354 --~~~~~~l~~L~~L~Ls~N~L 373 (694)
.+.+...+.|++|+|++|..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHhhCCceeEEECCCCcC
Confidence 24566778899999997644
No 173
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=95.73 E-value=0.0067 Score=50.59 Aligned_cols=32 Identities=6% Similarity=-0.132 Sum_probs=26.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.++| |.+++..|+|.|+|.|+|..+.+...+.
T Consensus 57 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (93)
T 1wit_A 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE 89 (93)
T ss_dssp EEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCChhcCEEEEEEEEcCCCeEEEEEE
Confidence 3556 8899999999999999999887665443
No 174
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=95.71 E-value=0.01 Score=50.89 Aligned_cols=32 Identities=16% Similarity=-0.033 Sum_probs=26.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
++| |.+++.+|+|.|+|.|+|..+.+...+..
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 94 (103)
T 1wwb_X 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94 (103)
T ss_dssp EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence 446 99999999999999999998876655443
No 175
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.70 E-value=0.007 Score=51.88 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=28.9
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+.|........... ++.+..++ +| |.+|+.+|+|.|+|.++|.
T Consensus 39 v~W~k~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 85 (106)
T 2dlt_A 39 GKWYKNGVEVRPSK-----RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY 85 (106)
T ss_dssp EEEEESSCBCCCCS-----SCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred eEEEcCCEECcCCC-----CEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence 56665554443222 22333344 56 8999999999999999998
No 176
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=95.68 E-value=0.0058 Score=51.99 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=23.4
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
.++| |.+|+..|+|.|+|.|+|..+..
T Consensus 75 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 102 (112)
T 3so5_A 75 TTILRLRNVEFTSEGXYQCVISNHFGSS 102 (112)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred ceEEEEeccccccCCeEEEEEEeCCCcE
Confidence 3566 99999999999999999988763
No 177
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=95.63 E-value=0.0088 Score=54.06 Aligned_cols=32 Identities=13% Similarity=-0.062 Sum_probs=26.3
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.|+| |.+++..|+|.|+|+|+|..+.+..-+.
T Consensus 62 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~ 94 (126)
T 1he7_A 62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 94 (126)
T ss_dssp EEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEECcCCCCCCEEEEEEEEECCCeEEEEEE
Confidence 3566 9999999999999999999987654433
No 178
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.55 E-value=0.0072 Score=52.84 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=33.7
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.|......... ...+..+..+++| |.+++.+|+|.|+|.++|..+...
T Consensus 40 i~W~k~g~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 89 (118)
T 2eo9_A 40 ILWRKDGVLVST----QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT 89 (118)
T ss_dssp EEEEESSSBCCT----TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEE
T ss_pred EEEEECCEECcC----CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEE
Confidence 566654433321 1233445567788 999999999999999999876543
No 179
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=95.51 E-value=0.0086 Score=50.08 Aligned_cols=31 Identities=16% Similarity=-0.110 Sum_probs=25.6
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
++| |.+++..|+|.|+|.++|..+.....+.
T Consensus 63 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 94 (100)
T 3irg_A 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVN 94 (100)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeecCcccCEEEEEEEEeCCCcEEEEEE
Confidence 556 8999999999999999998877655443
No 180
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=95.51 E-value=0.0072 Score=51.54 Aligned_cols=58 Identities=10% Similarity=-0.127 Sum_probs=36.8
Q ss_pred eeeeeceeE-------EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
....+.|.. +.|......... ..+..+..++ +| |.+++.+|+|.|+|.++|..+....
T Consensus 29 ~~v~l~C~~~g~p~p~i~W~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 97 (107)
T 3irg_B 29 AEAELKCVVLGEPPPVVVWEKGGQQLAA-----SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYA 97 (107)
T ss_dssp SCEEEEEEEEEESCCEEEEEETTEECCC-----CSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CeEEEEEEEeecCCCEEEEEECCeECCC-----CCcEEEEeCCCEEEEEEccCCHHhCEEEEEEEEcCCCcEEE
Confidence 344555654 556654433331 1233344445 56 9999999999999999998776543
No 181
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=95.43 E-value=0.0057 Score=51.74 Aligned_cols=44 Identities=9% Similarity=-0.151 Sum_probs=29.2
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEe
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+.|........... ++.+..+| +| |.+|+.+|+|.|+|.++|..
T Consensus 36 v~W~k~g~~i~~~~-----~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T 1waa_A 36 GQWKLKGQPLAASP-----DCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK 83 (93)
T ss_dssp CEEEETTEECCCBT-----TEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred EEEEECCEECcCCC-----CEEEEEECCEEEEEECCCChhhCEEEEEEECCCc
Confidence 56665554444222 22333333 56 99999999999999999864
No 182
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=95.40 E-value=0.0067 Score=51.02 Aligned_cols=29 Identities=7% Similarity=-0.128 Sum_probs=24.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+++..|+|.|+|.++|..+.....+
T Consensus 63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 92 (100)
T 2kdg_A 63 SLIFEVVRASDAGAYACVAKNRAGEATFTV 92 (100)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEcCCCeEEEEE
Confidence 56 889999999999999999888765443
No 183
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=95.33 E-value=0.0094 Score=51.74 Aligned_cols=55 Identities=5% Similarity=-0.208 Sum_probs=34.6
Q ss_pred EEEeccCccccccceeEeeeeEE-ecccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANV-TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~-~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
+.|...........+ .++.. .+.++| |.+++.+|+|.|+|.|+|..+.....+..
T Consensus 39 i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 95 (114)
T 2cqv_A 39 CTWMKFRKQIQESEH---MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95 (114)
T ss_dssp EEEEESSSBCCCSSS---EEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred EEEEECCEECcCCCC---EEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEE
Confidence 566665554442221 11111 123456 99999999999999999988766554433
No 184
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.28 E-value=0.013 Score=49.16 Aligned_cols=60 Identities=18% Similarity=0.070 Sum_probs=37.6
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
++....+.|.. +.|........... .....+.++| |.+++.+|+|.|+|.++|..+....
T Consensus 25 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~ 92 (99)
T 2yr3_A 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR-----STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92 (99)
T ss_dssp TTCCEEEECEEEEESCCCCEEEESSSBCSSCC-----CEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEE
T ss_pred CCCeEEEEEEEeeeCCCeEEEEECCEECcccc-----eEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence 34445666665 55655544433111 1122333566 8899999999999999998876543
No 185
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=95.26 E-value=0.012 Score=49.16 Aligned_cols=28 Identities=4% Similarity=-0.223 Sum_probs=23.6
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
+| |.+++.+|+|.|+|.++|..+.....
T Consensus 63 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 91 (99)
T 3puc_A 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91 (99)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence 45 99999999999999999987765443
No 186
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=95.24 E-value=0.015 Score=48.72 Aligned_cols=29 Identities=3% Similarity=-0.263 Sum_probs=24.2
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+++.+|+|.|+|.++|..+.....+
T Consensus 63 ~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~ 92 (99)
T 1u2h_A 63 RLRILAAERGDAGFYTCKAVNEYGARQCEA 92 (99)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEccCCcCCCEEEEEEEEECCCceeEEE
Confidence 45 899999999999999999887765443
No 187
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=95.23 E-value=0.012 Score=51.55 Aligned_cols=32 Identities=16% Similarity=-0.064 Sum_probs=26.0
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
..++| |.+|+..|+|.|+|.|+|..+.....+
T Consensus 72 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 104 (122)
T 3s35_X 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 104 (122)
T ss_dssp EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEECCCCcccCEEEEEEEccCCCceEEEE
Confidence 34566 999999999999999999887766443
No 188
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.01 Score=51.11 Aligned_cols=51 Identities=10% Similarity=-0.131 Sum_probs=32.0
Q ss_pred EEEeccCccccccceeEeeeeEEeccc--EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG--TV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g--tL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.|............ +..+....+| +| |.+|+..|+|.|+|.++|..+...
T Consensus 40 v~W~k~g~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~ 93 (110)
T 2dm2_A 40 IYWFKDGKQISPKSD--HYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93 (110)
T ss_dssp EEEECSSCBCCTTCS--SEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEE
T ss_pred EEEEECCEECCCCCC--eEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence 566665544432111 1222223344 45 889999999999999999876543
No 189
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=95.18 E-value=0.013 Score=49.96 Aligned_cols=51 Identities=14% Similarity=-0.137 Sum_probs=30.2
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
+.|...........+.. ...+.++| |.+++.+|+|.|+|.++|..+.....
T Consensus 42 i~W~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 93 (108)
T 3kvq_A 42 IMWFKDNETLVEDSGIV----LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 93 (108)
T ss_dssp EEEEESSSBCCCBTTEE----EETTTTEEEECSCCGGGCEEEEEEEC----CEEEE
T ss_pred EEEEECCeEcccCCCeE----EeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEE
Confidence 56666554443222211 12244667 99999999999999999987766544
No 190
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=95.17 E-value=0.014 Score=48.94 Aligned_cols=50 Identities=14% Similarity=-0.096 Sum_probs=33.3
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+.|........... ++.+. .++| |.+++.+|+|.|+|.++|..+.....+
T Consensus 40 i~W~k~g~~~~~~~-----~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 90 (95)
T 2ckn_A 40 INWLRDGVQLVESN-----RTRIT-GEEVEVRDSIPADSGLYACVTSSPSGSDTTYF 90 (95)
T ss_dssp EEEEBTTBCCCCCS-----SEEEC-SSEEEESSCCGGGSEEEEEEEEETTEEEEEEE
T ss_pred eEEEECCEecCCCC-----CEEEe-CCEEEECCCChHHCEEEEEEeccCCCcEEEEE
Confidence 56666443333222 23333 4566 999999999999999999877755443
No 191
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=95.11 E-value=0.025 Score=47.79 Aligned_cols=28 Identities=11% Similarity=-0.191 Sum_probs=23.6
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
+| |.+++..|+|.|+|.++|..+.....
T Consensus 65 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 93 (103)
T 3qp3_A 65 TLEILDCHTDDSGTYRAVCTNYKGEASDY 93 (103)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEcCCCcccCEEEEEEEEeCCCcEEEE
Confidence 45 99999999999999999987766443
No 192
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.0093 Score=51.17 Aligned_cols=26 Identities=12% Similarity=-0.080 Sum_probs=22.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+| |.+|+..|+|.|+|.++|..+...
T Consensus 67 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 93 (110)
T 2dm3_A 67 SLIIEPVTSRDAGIYTCIATNRAGQNS 93 (110)
T ss_dssp EEEESSCCGGGCSBBCEEEECSSCEEE
T ss_pred EEEEeeCCcccCEEEEEEEECCCCEEE
Confidence 56 899999999999999999876543
No 193
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=95.00 E-value=0.023 Score=49.64 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=27.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus 64 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 97 (118)
T 1wwc_A 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97 (118)
T ss_dssp EEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence 4566 99999999999999999998876665543
No 194
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=94.79 E-value=0.012 Score=51.14 Aligned_cols=74 Identities=8% Similarity=-0.129 Sum_probs=42.6
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EE-----EEEecCCCcceeEEEEEeeecccee
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QV-----YVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~-----~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
++....+.|.. +.|................+.....+|.+ +. +|+..|+|.|+|.++|..+.....-
T Consensus 23 ~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~ 102 (117)
T 2v9t_A 23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102 (117)
T ss_dssp TTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCC
T ss_pred CCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeee
Confidence 33445566655 55665544333221111122334445554 22 5589999999999999998877666
Q ss_pred EEeeccC
Q psy8879 501 VQKNTNC 507 (694)
Q Consensus 501 ~~~~~~~ 507 (694)
.+-.+.+
T Consensus 103 ~~l~~~~ 109 (117)
T 2v9t_A 103 ASLEVAA 109 (117)
T ss_dssp EEEEEC-
T ss_pred EEEEhhh
Confidence 5555443
No 195
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=94.73 E-value=0.016 Score=53.43 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=37.6
Q ss_pred eeeeeceeE-------EEEeccCccccccceeEeeeeEEecc--cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGL--GTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~--gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
....|.|.. +.|........... +..+....+ ++| |.+|+..|+|.|+|.|+|..+.....
T Consensus 57 ~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 127 (154)
T 1fhg_A 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESR---HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 127 (154)
T ss_dssp SCEEEEEEEEEESCCEEEEEETTEECCCSS---SEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEEEecCCEEEEEECCEECCCCC---cEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEE
Confidence 344556654 56666554443221 112222222 366 89999999999999999988775443
No 196
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=94.69 E-value=0.01 Score=51.11 Aligned_cols=31 Identities=10% Similarity=-0.139 Sum_probs=25.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
.++| |.+|+.+|+|.|+|.++|..+.....+
T Consensus 69 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 100 (106)
T 1nct_A 69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEF 100 (106)
T ss_dssp EEEEEECCCCSSCCSEEEECCBCSSCBCCEEE
T ss_pred EEEEEECcCCchhCEEEEEEEEeCCCeEEEEE
Confidence 3566 999999999999999999887755443
No 197
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=94.67 E-value=0.017 Score=48.28 Aligned_cols=29 Identities=7% Similarity=-0.271 Sum_probs=23.8
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
.++| |.+++.+|+|.|+|.++|..+....
T Consensus 50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~ 79 (95)
T 4hwu_A 50 GEYLQIKGATPRDSGLYACTAARTVDSETW 79 (95)
T ss_dssp TTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred CCEEEECcCCcccCEEEEEEEccCCCcEEE
Confidence 3556 9999999999999999998765433
No 198
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=94.58 E-value=0.016 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=20.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+|+.+|+|.|+|.++|.
T Consensus 65 ~~~L~I~~v~~~DsG~Y~C~a~n~ 88 (124)
T 3rbg_A 65 QLSITVPNVTLQDEGVYKCLHYSD 88 (124)
T ss_dssp EEEEEESSCCGGGCEEEEEEEESS
T ss_pred EEEEEECCCChHHCEEEEEEEEcC
Confidence 4667 9999999999999999998
No 199
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=94.53 E-value=0.011 Score=54.12 Aligned_cols=32 Identities=6% Similarity=-0.257 Sum_probs=26.5
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
+| |.+|+.+|+|.|+|.|+|..+.+...+...
T Consensus 104 ~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~ 136 (139)
T 1gxe_A 104 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136 (139)
T ss_dssp EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEeCCceEEEEEEEE
Confidence 45 899999999999999999998776555443
No 200
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.46 E-value=0.024 Score=49.45 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=26.0
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
+| |.+++.+|+|.|+|.++|..+.....+...
T Consensus 80 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 112 (118)
T 2e7c_A 80 VFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112 (118)
T ss_dssp EEEESSCCTTTCEEEEEEEECSSCEECCEEEEE
T ss_pred EEEECCCChhcCEEEEEEEEeCCCeEEEEEEEE
Confidence 35 899999999999999999888766554443
No 201
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=94.40 E-value=0.013 Score=50.10 Aligned_cols=43 Identities=12% Similarity=-0.062 Sum_probs=27.6
Q ss_pred EEEeccCccccccceeEeeeeEEecccE---E-EEEEEecCCCcceeEEEEE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGT---V-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gt---L-~~~v~~~d~G~YtC~~~n~ 492 (694)
+.|.......... .++.+..++. | |.+++.+|+|.|+|.+.|.
T Consensus 38 v~W~k~~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 84 (108)
T 2dm7_A 38 VEWKKGPETLRDG-----GRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE 84 (108)
T ss_dssp CEEESSSSBCCSS-----SSCEEEEETTEEEEEESSCCTTTCSEEEEEETTE
T ss_pred eEEEECCEECCCC-----CCEEEEecCCEEEEEECCCCcccCEEEEEEEcCC
Confidence 5666555444321 2333333443 5 9999999999999999654
No 202
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=94.39 E-value=0.018 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=20.4
Q ss_pred cccEE-EEEEEecCCCcceeEEEE
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
++++| |.+|+.+|+|.|+|.++|
T Consensus 69 ~~~~L~I~~v~~~D~G~Y~C~~~n 92 (108)
T 3m45_A 69 HELSISVSDVSLSDEGQYTCSLFT 92 (108)
T ss_dssp SEEEEEECSCCGGGCEEEEEEECS
T ss_pred CcEEEEECCCChhHCeEEEEEEEc
Confidence 45566 999999999999999999
No 203
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.17 E-value=0.029 Score=47.34 Aligned_cols=47 Identities=15% Similarity=-0.086 Sum_probs=31.5
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.|........... +..+. .++| |.+|+..|+|.|+|.++|..+...
T Consensus 34 i~W~k~g~~~~~~~-----~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 81 (99)
T 2cr3_A 34 INWLRDGVQLAESN-----RTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDT 81 (99)
T ss_dssp EEEEESSSBCCCCS-----SEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred EEEEECCEECCCCC-----cEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEE
Confidence 55665554433221 23333 4566 889999999999999999877653
No 204
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.16 E-value=0.015 Score=49.63 Aligned_cols=21 Identities=5% Similarity=-0.300 Sum_probs=19.3
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+++.+|+|.|+|.++|.
T Consensus 62 ~L~I~~v~~~D~G~Y~C~a~N~ 83 (100)
T 2yuz_A 62 KLVIANALTEDEGDYVFAPDAY 83 (100)
T ss_dssp EEEESSCCGGGCSEEEEEESSS
T ss_pred EEEECCCChhhCEEEEEEEcCC
Confidence 45 9999999999999999986
No 205
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=94.16 E-value=0.034 Score=46.57 Aligned_cols=31 Identities=16% Similarity=-0.049 Sum_probs=25.2
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
.+++| |.+++.+|+|.|+|.++|..+.....
T Consensus 60 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 91 (98)
T 1gl4_B 60 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 91 (98)
T ss_dssp ETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred CCCEEEEeCCChhhCEEEEEEecCCCCccccE
Confidence 35667 99999999999999999987665443
No 206
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=94.06 E-value=0.048 Score=45.52 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=24.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+++..|+|.|+|.++|..+......
T Consensus 59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 88 (97)
T 2bk8_A 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88 (97)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEecCChhhCeEEEEEEECCCCeEeEEE
Confidence 56 899999999999999999887665543
No 207
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=93.76 E-value=0.056 Score=45.78 Aligned_cols=21 Identities=5% Similarity=-0.252 Sum_probs=18.9
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
++| |.+++.+|+|.|+|.++|
T Consensus 64 ~~L~I~~~~~~D~G~Y~C~a~n 85 (103)
T 1x44_A 64 HILIIEGATKADAAEYSVMTTG 85 (103)
T ss_dssp EEEEEEEECTTTCSEEEEEETT
T ss_pred EEEEECCCCcccCEEEEEEECC
Confidence 455 999999999999999987
No 208
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=93.73 E-value=0.014 Score=49.11 Aligned_cols=43 Identities=7% Similarity=-0.094 Sum_probs=27.7
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+.|........... ++.+..+| +| |.+++.+|+|.|+|.|.|.
T Consensus 37 v~W~k~g~~i~~~~-----~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 37 VRWYKDGQEVEESD-----FVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp CEEEETTSCCCCCS-----SCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EEEEECCEEeeeee-----eeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence 56665554444222 22333333 45 9999999999999998664
No 209
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=93.64 E-value=0.017 Score=49.72 Aligned_cols=32 Identities=13% Similarity=-0.092 Sum_probs=26.1
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.++| |.+|+.+|+|.|+|.|+|..+.+...+.
T Consensus 71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 103 (108)
T 3cx2_A 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFN 103 (108)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eEEEEEecCCCccCEEEEEEEecCCCceEEEEE
Confidence 3556 9999999999999999998877655443
No 210
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=93.46 E-value=0.021 Score=51.36 Aligned_cols=28 Identities=7% Similarity=-0.145 Sum_probs=24.4
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
..++| |.+|+..|+|.|+|.|+|..+..
T Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 116 (137)
T 3qr2_A 88 AASTISIDTLVEEDTGTYECRASNDPDRN 116 (137)
T ss_dssp EEEEEEECSCCGGGCEEEEEEEECCTTSS
T ss_pred cceEEEECCCCcccCEEEEEEEEecCCcc
Confidence 45677 99999999999999999987765
No 211
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=93.39 E-value=0.019 Score=51.25 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=26.5
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
+| |.+|+.+|+|.|+|.|.|..+..++.+..+
T Consensus 85 sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~Lk 117 (125)
T 4gos_A 85 SLRLKNVQLTDAGTYKCYIITSKGKGNANLEYK 117 (125)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEECCCChHHCEEEEEEEEeCCCeEEEEEEEE
Confidence 45 999999999999999999887776655443
No 212
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=93.02 E-value=0.027 Score=50.79 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=22.2
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
..| |.+|+..|+|+|+|+|+|.....
T Consensus 75 ~~L~I~~v~~~DaG~Y~Cevsn~~g~~ 101 (126)
T 2dav_A 75 FEMQIIKAKDNFAGNYRCEVTYKDKFD 101 (126)
T ss_dssp EEEEECSCCTTSCEEEEEEEECSSCEE
T ss_pred EEEEEccCCcccCEEEEEEEEeCCCcE
Confidence 455 99999999999999999986443
No 213
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=92.89 E-value=0.12 Score=48.14 Aligned_cols=29 Identities=3% Similarity=-0.272 Sum_probs=24.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| +.+++.+|+|.|+|.|+|..+.....+
T Consensus 160 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 189 (194)
T 2a38_A 160 SLLIAEAYPEDSGTYSVNATNSVGRATSTA 189 (194)
T ss_dssp EEEEEEECGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEECCCChhcCeEEEEEEEeCCCceEEEE
Confidence 45 999999999999999999887765543
No 214
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.73 E-value=0.043 Score=47.04 Aligned_cols=21 Identities=0% Similarity=-0.368 Sum_probs=18.2
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.+.|.
T Consensus 66 ~L~I~~v~~~D~G~Y~C~a~~~ 87 (104)
T 2eny_A 66 ILVVREAAPSDAGEVVFSVRGL 87 (104)
T ss_dssp EEEECSCCTTTCSCEEEEETTE
T ss_pred EEEECCCCHHHCEEEEEEECCe
Confidence 56 9999999999999988654
No 215
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=92.55 E-value=0.043 Score=51.37 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=35.4
Q ss_pred eeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 437 ALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 437 ~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
...+.|.. +.|......... ....+..+..+++| |.+++..|+|.|+|.|+|....
T Consensus 113 ~~~l~C~~~g~p~p~v~W~~~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 176 (189)
T 2v44_A 113 DAEVVCRVSSSPAPAVSWLYHNEEVTT---ISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARG 176 (189)
T ss_dssp CEEECCEEECSSCCEEEEEEEC--CEE---CCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTT
T ss_pred CEEEEEEECcCCCCcEEEEECCcEEec---cCCCCEEEecCCcEEEEEcCcccCeEEEEEEEccccC
Confidence 34556654 555554443321 11234455566777 8999999999999999997643
No 216
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=92.49 E-value=0.039 Score=47.75 Aligned_cols=28 Identities=11% Similarity=0.066 Sum_probs=23.0
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
.+| |.+|+.+|+|.|+|.+.+.....+.
T Consensus 89 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~ 117 (126)
T 1eaj_A 89 ASINVTNLQLSDIGTYQCKVKKAPGVANK 117 (126)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEECcCChHHCeEEEEEEEcCCccCCc
Confidence 556 9999999999999999986554443
No 217
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=92.45 E-value=0.093 Score=49.69 Aligned_cols=26 Identities=8% Similarity=-0.073 Sum_probs=22.1
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
..++| |.+|+.+|+|.|+|.|+|...
T Consensus 153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 153 HQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred cceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 44566 999999999999999999754
No 218
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=92.33 E-value=0.044 Score=47.03 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=27.2
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n 491 (694)
+.|.......... ..+..+..+| +| |.+|+.+|+|.|+|.+.+
T Consensus 47 v~W~k~g~~l~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 93 (104)
T 1pd6_A 47 VKWLKNGQEIQMS----GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93 (104)
T ss_dssp CEEEESSSEECCC----SSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred EEEEECCEECCCC----CCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence 5565554443321 0233344445 66 999999999999999954
No 219
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=92.31 E-value=0.28 Score=41.00 Aligned_cols=18 Identities=6% Similarity=-0.114 Sum_probs=16.6
Q ss_pred EE-EEEEEecCCCcceeEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLL 489 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~ 489 (694)
+| |.+++.+|+|.|+|.+
T Consensus 64 ~L~I~~~~~~D~G~Y~C~a 82 (100)
T 2yuv_A 64 ILFINNCQMTDDSEYYVTA 82 (100)
T ss_dssp EEEEEEECTTTCCEEEEEE
T ss_pred EEEEcCCCcCcCEEEEEEE
Confidence 45 9999999999999998
No 220
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=92.29 E-value=0.094 Score=50.55 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=24.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
++| |.+|+.+|+|.|+|.|+|..+.....
T Consensus 171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~ 200 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNS 200 (213)
T ss_dssp EEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEECCCCcccCEEEEEEEecCCCcEEEE
Confidence 456 99999999999999999988766443
No 221
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.27 E-value=0.031 Score=47.29 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=18.4
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|+|.++|
T Consensus 64 ~L~I~~v~~~D~G~Y~C~a~n 84 (103)
T 2edf_A 64 MLVIRGASLKDAGEYTCEVEA 84 (103)
T ss_dssp EEEESSCCTTTCSEEEEECSS
T ss_pred EEEECCCCcccCEEEEEEEcc
Confidence 35 899999999999999998
No 222
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=92.25 E-value=0.074 Score=50.90 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=32.3
Q ss_pred eeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879 463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN 504 (694)
Q Consensus 463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~ 504 (694)
.+..+...++| |.+++.+|+|.|+|.|+|..+........-+
T Consensus 162 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp CSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred CcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 34455667778 8899999999999999999887765544433
No 223
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=92.17 E-value=0.084 Score=50.13 Aligned_cols=30 Identities=3% Similarity=-0.248 Sum_probs=25.0
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+| |.+++.+|+|.|+|.|+|..+.....+.
T Consensus 175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 205 (212)
T 2r15_A 175 YFTINGVSTADSGKYGLVVKNKYGSETSDFT 205 (212)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEcCcchHHCeEEEEEEEcCCCcEEEEEE
Confidence 55 8999999999999999999887655443
No 224
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=92.02 E-value=0.069 Score=49.85 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=38.1
Q ss_pred eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
....+.|.. +.|......... ..+..+..+++| +.+++..|+|.|+|.|+|..+...
T Consensus 116 ~~~~l~C~~~g~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 180 (192)
T 2iep_A 116 LKAVLPCTTMGNPKPSVSWIKGDSALRE-----NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY 180 (192)
T ss_dssp SCEEECCEEEEESCCEEEEEETTEECCC-----CSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEeccCCceEEEEeCCEEccC-----CCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEE
Confidence 334566654 556554443331 223445566777 889999999999999999887663
No 225
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=92.01 E-value=0.067 Score=44.12 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=22.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
++| |.+++.+|+|.|+|.++|..+..
T Consensus 50 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 76 (91)
T 3bfo_A 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQ 76 (91)
T ss_dssp SEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred CeEEECCCCHHhCEEEEEEEEcCCCCE
Confidence 455 88999999999999999987753
No 226
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.00 E-value=0.044 Score=47.11 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=18.5
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|+|.+.|
T Consensus 69 ~L~I~~v~~~D~G~Y~C~a~n 89 (113)
T 2cpc_A 69 RLVLPAVQLEDSGEYLCEIDD 89 (113)
T ss_dssp EEEESSCCTTTCEEEEEESSS
T ss_pred EEEECCCCcccCEEEEEEEec
Confidence 55 999999999999999988
No 227
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=92.00 E-value=0.05 Score=52.79 Aligned_cols=30 Identities=10% Similarity=-0.199 Sum_probs=25.2
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
++| |.+|+..|+|.|+|+|+|..+.+....
T Consensus 171 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 201 (207)
T 3rbs_A 171 CTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201 (207)
T ss_dssp EEEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCEEEEEE
Confidence 346 999999999999999999988766543
No 228
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=91.91 E-value=0.11 Score=49.86 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=29.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTN 506 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~ 506 (694)
.++| |.+++.+|+|.|+|.|+|..+...+..+.-++.
T Consensus 166 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 166 IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 3566 899999999999999999998876665554443
No 229
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=91.81 E-value=0.096 Score=52.43 Aligned_cols=33 Identities=6% Similarity=-0.053 Sum_probs=27.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.++| |.+|+..|+|.|+|.|+|..+.....+..
T Consensus 244 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L 277 (289)
T 3ejj_X 244 VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277 (289)
T ss_dssp EEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEeecccCCEEEEEEEEcCCCCccccEEE
Confidence 4566 88999999999999999998887766554
No 230
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=91.79 E-value=0.14 Score=43.94 Aligned_cols=40 Identities=10% Similarity=-0.129 Sum_probs=27.0
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLL 489 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~ 489 (694)
+.|.......... .++.+..++ +| |.+++.+|+|.|+|.+
T Consensus 49 v~W~k~~~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (113)
T 2edh_A 49 VEWWKGHETLRDG-----DRHSLRQDGARCELQIRGLVAEDAGEYLCMC 92 (113)
T ss_dssp CEEEESSSBCCCS-----SSEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred EEEEECCEECCCC-----CcEEEEECCCEEEEEECCCChhhCEEEEEEe
Confidence 5566555444322 333444455 56 9999999999999999
No 231
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=91.74 E-value=0.2 Score=46.59 Aligned_cols=32 Identities=16% Similarity=-0.039 Sum_probs=25.0
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
..++| |.+|+.+|+|.|+|.|+|........+
T Consensus 141 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~ 173 (184)
T 2ny1_B 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI 173 (184)
T ss_dssp ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CceEEEEecCCcCCCeEEEEEEEECCceEEEEE
Confidence 44666 899999999999999998665554444
No 232
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=91.69 E-value=0.16 Score=49.19 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=31.9
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE----EEEEEecCCCcceeEEEEEeeeccceeEEeeccCCCC
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV----QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRP 510 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL----~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~~~ 510 (694)
+.|...++...... ........+|+. +.+|+.+|.|.|+|.|+|.++..+... .+...+|
T Consensus 151 i~W~k~~~~~~~~~---~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~---~v~v~ep 214 (226)
T 4f80_A 151 IQWSNNKGENIPTV---EAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTA---SISIADP 214 (226)
T ss_dssp EEEECTTSCBCCCE---ECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEE---EECCCTT
T ss_pred EEEEECCceEcCCC---ceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEE---EEEECCC
Confidence 66766554443111 222233445543 457888999999999999987665443 3444454
No 233
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=91.58 E-value=0.15 Score=47.29 Aligned_cols=32 Identities=9% Similarity=-0.203 Sum_probs=26.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.++| |.+++..|+|.|+|.|+|..+.....+.
T Consensus 151 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 183 (189)
T 2v5t_A 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183 (189)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEE
Confidence 4556 8899999999999999998887665443
No 234
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=91.53 E-value=0.062 Score=52.56 Aligned_cols=34 Identities=9% Similarity=-0.136 Sum_probs=26.7
Q ss_pred ecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.+.++| |.+|+.+|+|.|+|.|+|.++..+...+
T Consensus 210 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~ 244 (250)
T 2fbo_J 210 SGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244 (250)
T ss_dssp ETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEE
T ss_pred CCccEEEEecCCcccCEEEEEEecCCccccCccce
Confidence 345677 9999999999999999997765554433
No 235
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=91.53 E-value=0.11 Score=51.96 Aligned_cols=68 Identities=7% Similarity=-0.090 Sum_probs=41.5
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecc-cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGL-GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~-gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.+....+.|.. +.|........ .......+..+..+ ++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus 210 ~g~~v~l~C~~~g~p~p~i~W~~~g~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 286 (291)
T 1qz1_A 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIE-NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286 (291)
T ss_dssp SCCCEEEEEEEEEESCCEEEEEETTEECC-CC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred cCceEEEEEEEEEeCCCcEEEEECCEECc-CCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEE
Confidence 33445677765 55655544333 21111123334333 356 89999999999999999998876655443
No 236
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=91.49 E-value=0.11 Score=49.07 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=27.4
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccceeEEeeccCC
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCS 508 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~ 508 (694)
++| |.+++..|.|.|+|.|+|..+..+..+ ..+++++
T Consensus 175 s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~-t~~v~V~ 212 (218)
T 4frw_A 175 SEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI-THILHVS 212 (218)
T ss_dssp EEEEECCCGGGTTCEEEEEEECTTCSSCEEE-EEECCEE
T ss_pred EEEEEeeCCHHhCeEEEEEEEeCCCCeEEEE-EEEEEEC
Confidence 456 888999999999999999887765443 3344444
No 237
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=91.49 E-value=0.049 Score=47.71 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=23.9
Q ss_pred EE-EEEEEecCC-CcceeEEEEEeeeccce
Q psy8879 472 TV-QVYVQLWTN-YDPNCLLTITLYIDGDV 499 (694)
Q Consensus 472 tL-~~~v~~~d~-G~YtC~~~n~~~~~~~~ 499 (694)
+| |.+|+..|. |.|+|.|+|..+.+...
T Consensus 77 ~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~ 106 (122)
T 2cry_A 77 TLTISNIVRADFQTIYNCTAWNSFGSDTEI 106 (122)
T ss_dssp EEECTTCCHHHHHSCEEEEEECSSCEEEEE
T ss_pred EEEEcCCChhhCCceEEEEEECCCCeEEEE
Confidence 55 889999999 99999999998876643
No 238
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.45 E-value=0.062 Score=45.29 Aligned_cols=21 Identities=5% Similarity=-0.175 Sum_probs=17.9
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+++.+|+|.|+|.+.+.
T Consensus 67 ~L~I~~~~~~D~G~Y~C~a~~~ 88 (102)
T 2eo1_A 67 RLVVQQAGQAEAGEYSCEAGGQ 88 (102)
T ss_dssp EEEETTCCTTTCSCEEEEETTE
T ss_pred EEEECCCCcccCEEEEEEcCCC
Confidence 55 8899999999999998543
No 239
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=91.41 E-value=0.12 Score=49.51 Aligned_cols=33 Identities=6% Similarity=-0.161 Sum_probs=26.3
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.++| |.+++..|+|.|+|.++|..+.....+..
T Consensus 75 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 108 (215)
T 3mtr_A 75 ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108 (215)
T ss_dssp EEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred eeEEEEecCChhhCeEEEEEEEECCCceEEEEEE
Confidence 4566 99999999999999999988776544433
No 240
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=91.31 E-value=0.23 Score=46.07 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=24.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
++| |.+++.+|+|.|+|.|+|..+.....+
T Consensus 157 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 187 (192)
T 2va4_A 157 SSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 187 (192)
T ss_dssp EEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEEecCCcccCEEEEEEEEecCCceEEEE
Confidence 455 999999999999999999887755443
No 241
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=91.27 E-value=0.074 Score=45.58 Aligned_cols=33 Identities=15% Similarity=-0.080 Sum_probs=26.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
+.+| |.+|+.+|+|.|+|.+.+........++.
T Consensus 68 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~ 101 (110)
T 1ncn_A 68 SWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ 101 (110)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred CEEEEEcCCChHHCEEEEEEEEcCCCCceEEEEE
Confidence 4677 99999999999999999987665554443
No 242
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.21 E-value=0.039 Score=49.11 Aligned_cols=27 Identities=11% Similarity=-0.280 Sum_probs=23.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
+++| |.+|+..|+|.|+|+|+|.....
T Consensus 79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~~ 106 (118)
T 2edn_A 79 TVELHIGKVVLGDRGYYRLEVKAKDTCD 106 (118)
T ss_dssp EEEEEESSCCTTTCSCEEEEEECSSCEE
T ss_pred eEEEEEeeCChhhCEEEEEEEEEcCCcE
Confidence 3556 99999999999999999987643
No 243
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=91.20 E-value=0.17 Score=47.36 Aligned_cols=25 Identities=8% Similarity=-0.423 Sum_probs=21.6
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
+| |.+++..|+|.|+|.++|..+..
T Consensus 63 ~L~i~~~~~~d~G~Y~C~~~n~~g~~ 88 (197)
T 2j8h_A 63 QLIIASVTDDDATVYQVRATNQGGSV 88 (197)
T ss_dssp EEEECSCCGGGCSEEEEEEEETTEEE
T ss_pred EEEECcCCHHhCEEEEEEEEECCCce
Confidence 56 99999999999999999876553
No 244
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=91.14 E-value=0.052 Score=51.04 Aligned_cols=35 Identities=11% Similarity=-0.169 Sum_probs=28.2
Q ss_pred eeeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 462 SLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 462 ~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
..|..+..+|+| |.+|+.+|+|.|+|.+.|..+..
T Consensus 52 ~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~ 87 (176)
T 1hng_A 52 SGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR 87 (176)
T ss_dssp STTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred CCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCE
Confidence 345566677878 99999999999999999876543
No 245
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=91.10 E-value=0.18 Score=47.61 Aligned_cols=31 Identities=10% Similarity=-0.155 Sum_probs=26.2
Q ss_pred eeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.|..+..+++| |.+++..|+|.|+|.+.+..
T Consensus 63 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 94 (208)
T 3r4d_A 63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDEN 94 (208)
T ss_dssp SSEEECTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred ceeEEecCCeEEEccccccCCeEEEEEEEccc
Confidence 35566677778 99999999999999999874
No 246
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.00 E-value=0.067 Score=45.11 Aligned_cols=20 Identities=5% Similarity=-0.298 Sum_probs=17.9
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++..|+|.|+|.+.|
T Consensus 68 ~L~I~~~~~~D~G~Y~C~a~n 88 (101)
T 2edk_A 68 ILIFSDVVQEDRGRYQVITNG 88 (101)
T ss_dssp EEECSSCCGGGCSBEEEECSS
T ss_pred EEEECCCChhhCEEEEEEEcC
Confidence 35 889999999999999987
No 247
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=90.89 E-value=0.082 Score=49.37 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=36.5
Q ss_pred eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
....+.|.. +.|.......... ...+..+..+++| |.+++.+|+|.|+|.|+|...
T Consensus 116 ~~~~l~C~~~g~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 179 (191)
T 1epf_A 116 EDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179 (191)
T ss_dssp SCEEECCEEECSSCCEEEEEETTEEGGGG---CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred CeEEEEEEECCCCCCEEEEEECCEEeecc---CCceEEEecCCeEEECCCChhhCEEEEEEEEEecc
Confidence 345566654 5666555443311 1234455566677 899999999999999999653
No 248
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=90.78 E-value=0.11 Score=49.25 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=36.4
Q ss_pred eeeeeceeE------EEEeccCccccccceeEeeeeEEecc-cEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 436 SALVLGCSE------ILALVPTLTSQPLSYVTSLRANVTGL-GTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 436 ~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~~~-gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
....+.|.. +.|.......... .+..+..+ ++| |.+++..|+|.|+|.|+|.++...
T Consensus 126 ~~v~l~C~~~~~pp~i~W~~~g~~l~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 190 (208)
T 3r4d_A 126 DSVTLTCLSNDIGANIQWLFNSQSLQLT-----ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190 (208)
T ss_dssp CCEEEEEECSCTTCEEEEEETTEECCCC-----SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEE
T ss_pred CCEEEEEECCCCCCceEEEECCEeCCCC-----CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCccc
Confidence 334555543 6666654443312 22233333 666 899999999999999999876644
No 249
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=90.76 E-value=0.14 Score=49.05 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=24.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
+|+| |.+++.+|+|.|+|.|+|..+....
T Consensus 162 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s 191 (212)
T 2yd1_A 162 DGFLQIENSREEDQGKYECVAENSMGTEHS 191 (212)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred CCeEEEccCChhhCEEEEEEeecCCCceeE
Confidence 4566 9999999999999999998887653
No 250
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=90.72 E-value=0.19 Score=51.24 Aligned_cols=30 Identities=17% Similarity=-0.102 Sum_probs=24.8
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
.++| |.+|+.+|+|.|+|.|+|.++.....
T Consensus 267 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 297 (313)
T 4fqp_A 267 GAQLLIRPVDKPINTTLICNVTNALGARQAE 297 (313)
T ss_dssp TTEEEECCCSSCCEEEEEEEEECSSCEEEEE
T ss_pred CCEEEECcCChhhCEEEEEEEEeCCCcEEEE
Confidence 4566 89999999999999999988765443
No 251
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=90.70 E-value=0.32 Score=45.17 Aligned_cols=57 Identities=16% Similarity=-0.013 Sum_probs=35.2
Q ss_pred ceeeeeceeE-------EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
+....+.|.. +.|......... ..+..+..++ +| |.+++..|+|.|+|.++|.....
T Consensus 22 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~ 89 (197)
T 3lcy_A 22 GEAAQLSCQIVGRPLPDIKWYRFGKELIQ-----SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV 89 (197)
T ss_dssp TSEEEEEEEEEEESCCEEEEEETTEEECC-----CSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE
T ss_pred CCcEEEEEEEecCCCCEEEEEECCEECCC-----CccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce
Confidence 3445566654 556555444331 1222333344 55 99999999999999999865543
No 252
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=90.59 E-value=0.08 Score=43.70 Aligned_cols=20 Identities=5% Similarity=-0.212 Sum_probs=17.3
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++..|+|.|+|.|.|
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~n 72 (84)
T 2lu7_A 52 VLRVQGARSGDAGEYLCDAPQ 72 (84)
T ss_dssp EEEESSCSSTTCEEEEEECTT
T ss_pred EEEecCCCCcccEEEEEEECC
Confidence 45 999999999999998744
No 253
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=90.55 E-value=0.15 Score=54.02 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=40.3
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
.+....+.|.+ +.|........... ++.+. +++| |.+|+.+|+|.|+|.|+|..+......
T Consensus 309 ~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-----~~~~~-~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a 377 (384)
T 3kld_A 309 MEESVFWECKANGRPKPTYRWLKNGDPLLTRD-----RIQIE-QGTLNITIVNLSDAGMYQCVAENKHGVIFSSA 377 (384)
T ss_dssp TTCCEEEECEEEEESCCEEEEEETTEECCCBT-----TEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEeECCccCCCeEEEEECCEECCCCc-----cEEEe-CCEEEEeecChhhCEEEEEEEEeCCceEEece
Confidence 34456678876 55655444333222 22333 4566 999999999999999999888765443
No 254
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=90.47 E-value=0.19 Score=52.70 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=22.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
.++| |.+|+.+|+|.|+|.|+|..+..
T Consensus 62 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 89 (389)
T 2jll_A 62 SSSLHIKDVKLSDSGRYDCEAASRIGGH 89 (389)
T ss_dssp EEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred cceEEEcccChhhCEEEEEEEEeCCCCc
Confidence 4566 99999999999999999866544
No 255
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=90.40 E-value=0.12 Score=46.88 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+++| |.+|+.+|+|.|+|.++|.
T Consensus 102 ~~~L~I~~v~~~DsG~Y~C~~~n~ 125 (145)
T 1z9m_A 102 ELSISISNVALADEGEYTCSIFTM 125 (145)
T ss_dssp EEEEEECSCCGGGCEEEEEEECSS
T ss_pred eEEEEECCCChhhCEEEEEEEEcC
Confidence 4566 9999999999999999987
No 256
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=90.37 E-value=0.075 Score=47.70 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=22.8
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
.+| |.+|+.+|+|.|+|.+.+..+..+.
T Consensus 85 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~ 113 (139)
T 1pko_A 85 VALRIQNVRFSDEGGYTCFFRDHSYQEEA 113 (139)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEEccCCHHHCEEEEEEEEcCCCceEE
Confidence 456 9999999999999999997654333
No 257
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=90.33 E-value=0.18 Score=51.02 Aligned_cols=30 Identities=3% Similarity=-0.248 Sum_probs=25.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+| |.+|+..|+|.|+|.|+|..+.....+.
T Consensus 280 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 310 (317)
T 2y25_A 280 YFTINGVSTADSGKYGLVVKNKYGSETSDFT 310 (317)
T ss_dssp EEEEBSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEEEeCCCeEEEEEE
Confidence 55 9999999999999999999887755444
No 258
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=90.24 E-value=0.07 Score=50.52 Aligned_cols=28 Identities=7% Similarity=-0.326 Sum_probs=24.1
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
..++| |.+|+.+|+|.|+|.|+|..+..
T Consensus 151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 34555 89999999999999999998876
No 259
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=90.17 E-value=0.11 Score=49.19 Aligned_cols=24 Identities=8% Similarity=-0.175 Sum_probs=20.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.+.| |.+|+.+|+|.|+|.|+|..
T Consensus 156 ~~~L~i~~v~~~D~G~Y~C~a~n~~ 180 (198)
T 1ugn_A 156 RAIFSVGPVSPSRRWWYRCYAYDSN 180 (198)
T ss_dssp EEEEEECCCCTTSCEEEEEEEECTT
T ss_pred eeEEEecccCcccCeEEEEEEEeCC
Confidence 3556 99999999999999999974
No 260
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=90.14 E-value=0.18 Score=50.55 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=27.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
.++| |.+|+..|+|.|+|.|+|.++.........
T Consensus 241 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 275 (289)
T 3mjg_X 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275 (289)
T ss_dssp EEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcccChhhCcEEEEEeecCCCCceeEEEEE
Confidence 3566 999999999999999999887766544433
No 261
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=90.10 E-value=0.16 Score=50.94 Aligned_cols=32 Identities=9% Similarity=-0.142 Sum_probs=26.1
Q ss_pred ecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
...++| |.+|+..|+|.|+|.|+|..+.....
T Consensus 249 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~ 281 (290)
T 2o26_X 249 ERQETLTISSARVDDSGVFMCYANNTFGSANVT 281 (290)
T ss_dssp EEEEEEEESSCCSSSCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEE
Confidence 344566 99999999999999999988776443
No 262
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=90.10 E-value=0.23 Score=49.68 Aligned_cols=33 Identities=9% Similarity=-0.213 Sum_probs=27.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.++| |.+++.+|+|.|+|.|+|..+........
T Consensus 247 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 280 (291)
T 2wim_A 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280 (291)
T ss_dssp TCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEeeCCcccCEEEEEEEEECCCceeeeEEE
Confidence 3556 99999999999999999998877665543
No 263
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.07 E-value=0.058 Score=45.64 Aligned_cols=21 Identities=5% Similarity=-0.056 Sum_probs=18.9
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+++.+|+|.|+|.+.|.
T Consensus 66 ~L~I~~~~~~D~G~Y~C~a~n~ 87 (104)
T 2e6p_A 66 RLILPEAKVQDSGEFECRTEGV 87 (104)
T ss_dssp EEEESSCCTTTCEEEEEECSSC
T ss_pred EEEECCCChhhCEEEEEEECCc
Confidence 45 8999999999999999885
No 264
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=90.02 E-value=0.097 Score=44.81 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=19.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
+.+| |.+|+.+|+|.|+|.+.+
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~ 100 (118)
T 3udw_C 78 NASLRMFGLRVEDEGNYTCLFVT 100 (118)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEE
T ss_pred CcEEEEeecChHHCeEEEEEEEE
Confidence 4566 999999999999999988
No 265
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=89.94 E-value=0.24 Score=47.33 Aligned_cols=27 Identities=4% Similarity=-0.129 Sum_probs=21.6
Q ss_pred cEE-EEEE-EecCCCcceeEEEEEeeecc
Q psy8879 471 GTV-QVYV-QLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 471 gtL-~~~v-~~~d~G~YtC~~~n~~~~~~ 497 (694)
..| |.++ +..|+|.|+|.++|..+...
T Consensus 63 ~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~ 91 (212)
T 2yd6_A 63 SVLRIQPLRTPRDEAIYECVASNNVGEIS 91 (212)
T ss_dssp EEEEECSCCTTTTCEEEEEEEEETTEEEE
T ss_pred eEEEEeccCCCCCCeEEEEEEEcCCCcEE
Confidence 345 8889 49999999999999776643
No 266
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.82 E-value=0.085 Score=43.98 Aligned_cols=25 Identities=8% Similarity=-0.088 Sum_probs=21.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
.++| |.+++.+|+|.|+|.++|...
T Consensus 56 ~~~L~i~~v~~~d~G~Y~C~a~n~~~ 81 (96)
T 2ens_A 56 SPVLILPEIGPQDQGTYSCVATHSSH 81 (96)
T ss_dssp CSEEEEESCCTTTCEEEECEECCSSC
T ss_pred CCEEEECCCCcccCEEEEEEEEeCCC
Confidence 4566 899999999999999999543
No 267
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=89.74 E-value=0.31 Score=45.48 Aligned_cols=31 Identities=13% Similarity=-0.121 Sum_probs=25.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
.++| |.+++.+|+|.|+|.|+|..+.....+
T Consensus 164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 195 (201)
T 3s97_C 164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQA 195 (201)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEccCChhhCEEEEEEEEecCCceeeeE
Confidence 4566 999999999999999999887765433
No 268
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=89.71 E-value=0.23 Score=49.14 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=24.5
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
.+++| |.+|+..|+|.|+|.|+|..+.....
T Consensus 199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 230 (268)
T 3mj6_A 199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKT 230 (268)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CeEEEEECcCChhhCeEEEEEEEcCCceEEEE
Confidence 45666 99999999999999999966554433
No 269
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=89.60 E-value=0.27 Score=49.11 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=25.3
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
.++| |.+|+..|+|.|+|.|+|..+.....+
T Consensus 244 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~ 275 (292)
T 4dkd_C 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM 275 (292)
T ss_dssp EEEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEECccChhcCeEEEEEEecCCCCceeEE
Confidence 3566 899999999999999999887755443
No 270
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=89.48 E-value=0.27 Score=49.58 Aligned_cols=24 Identities=8% Similarity=-0.400 Sum_probs=20.9
Q ss_pred EE-EEEEEecCCCcceeEEEEEeee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
+| |.+|+..|+|.|+|.++|..+.
T Consensus 63 ~L~i~~v~~~d~G~Y~C~a~n~~g~ 87 (305)
T 2nzi_A 63 QLIIASVTDDDATVYQVRATNQGGS 87 (305)
T ss_dssp EEEESSCCGGGCSEEEEEEEETTEE
T ss_pred EEEEccCChhhCeEEEEEEEcCCCC
Confidence 56 9999999999999999996554
No 271
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=89.42 E-value=0.15 Score=45.00 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=18.6
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
.+| |.+|+.+|+|.|+|.+.+
T Consensus 80 ~sL~I~~v~~~DsG~Y~C~v~t 101 (123)
T 4gjt_B 80 GSVLLRNAVQADEGEYECRVST 101 (123)
T ss_dssp CCEEEESCCSSSCSEEEEEEEE
T ss_pred EEEEECCCChHHCEEEEEEEEE
Confidence 456 999999999999999875
No 272
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=89.40 E-value=0.09 Score=50.10 Aligned_cols=33 Identities=9% Similarity=-0.248 Sum_probs=28.1
Q ss_pred eeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 462 SLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 462 ~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
+.|..+..+|+| |.+|+..|+|.|+|.++|..+
T Consensus 57 ~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g 90 (182)
T 1hnf_A 57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG 90 (182)
T ss_dssp CTTEEECTTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred CCeEEECCCCCEEECCCChhhCEEEEEEEEeCCC
Confidence 456677788888 999999999999999998654
No 273
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=89.36 E-value=0.18 Score=48.30 Aligned_cols=52 Identities=6% Similarity=-0.206 Sum_probs=31.8
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.|...........+.. ......+.++| |.+++..|+|.|+|.++|......
T Consensus 51 v~W~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~ 103 (231)
T 3ojm_B 51 MRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103 (231)
T ss_dssp EEEEETTEECCGGGSTT-CCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEECCcccccccccc-ceeeecCcceEEEecCCcccCEEEEEEEecccCccc
Confidence 55655444433222211 11223344566 899999999999999999766543
No 274
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=89.35 E-value=0.15 Score=48.14 Aligned_cols=32 Identities=6% Similarity=-0.098 Sum_probs=25.9
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
..++| |.+++..|+|.|+|.|+|.++.....+
T Consensus 174 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~ 206 (214)
T 3jz7_A 174 TSPVISVKNASSEYSGTYSCTVQNRVGSDQCML 206 (214)
T ss_dssp TSSEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred CCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEE
Confidence 34566 999999999999999999887665443
No 275
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=89.28 E-value=0.17 Score=47.83 Aligned_cols=26 Identities=4% Similarity=-0.192 Sum_probs=22.2
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
..++| |.+|+.+|+|.|+|.++|...
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (196)
T 3p2t_A 56 NKARFSIPSMTEDYAGRYRCYYRSPVG 82 (196)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred ceEEEEeccCCcccCceEEEEEeCCCc
Confidence 34556 899999999999999999766
No 276
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=89.24 E-value=0.14 Score=44.85 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=22.5
Q ss_pred eeEEecccEE-EEEEEecCCCcceeEEEE
Q psy8879 464 RANVTGLGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
|+.+..+.+| |.+|+.+|+|.|+|.+..
T Consensus 64 R~~~~~~~sL~I~~v~~~D~G~Y~C~v~~ 92 (117)
T 3q0h_A 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHT 92 (117)
T ss_dssp TEEECSTTCEEECSCCGGGCEEEEEEEEE
T ss_pred cEEeCCceEEEEeeCChhhCEEEEEEEEE
Confidence 4444556777 999999999999999864
No 277
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=89.15 E-value=0.36 Score=44.79 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=21.8
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
..++| |.+++..|+|.|+|.+.|..
T Consensus 60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~ 85 (191)
T 1epf_A 60 DSSTLTIYNANIDDAGIYKCVVTAED 85 (191)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CceEEEEccCCcccCEEEEEEEEcCC
Confidence 44566 99999999999999999976
No 278
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=89.13 E-value=0.22 Score=52.35 Aligned_cols=63 Identities=10% Similarity=-0.037 Sum_probs=41.7
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
++....+.|.. +.|......... ..+..+.+.++| |.+++.+|+|.|+|.|+|..+.....+.
T Consensus 326 ~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 396 (403)
T 3laf_A 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIP-----SDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ 396 (403)
T ss_dssp TTCCEEECCEEEEESCCEEEEEETTEECCC-----SSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cCCeEEEEEEEeeccCCEEEEEECCEECCC-----CCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEE
Confidence 34456677765 455554433331 122334456777 8899999999999999998888766543
No 279
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=89.09 E-value=0.16 Score=43.79 Aligned_cols=21 Identities=19% Similarity=0.011 Sum_probs=19.3
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|.|.+.|.
T Consensus 72 ~L~I~~v~~~DsG~Y~C~~~n~ 93 (113)
T 1h5b_A 72 TLHIRDAQLEDSGTYFCAAEAS 93 (113)
T ss_dssp EEEECSCCGGGCEEEEEEEECS
T ss_pred EEEECCCChhhCEEEEEEEecC
Confidence 56 9999999999999999985
No 280
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=89.01 E-value=0.24 Score=46.56 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=21.5
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
..++| |.+|+.+|+|.|+|.++|..
T Consensus 147 ~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 147 VQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp SEEEEEEEECCGGGCEEEEEECEEET
T ss_pred ceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 44566 99999999999999999874
No 281
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=88.88 E-value=0.21 Score=48.38 Aligned_cols=53 Identities=8% Similarity=-0.143 Sum_probs=32.2
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
+.|................ ....+.++| |.+++..|+|.|+|.++|.......
T Consensus 47 v~W~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 100 (241)
T 3grw_A 47 ISWLKNGREFRGEHRIGGI-KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100 (241)
T ss_dssp EEEEETTEECCGGGSTTCC-EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred eEEEECCcccCCCCcccce-eeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence 5666554444322221111 122344566 9999999999999999996655443
No 282
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=88.83 E-value=0.31 Score=46.69 Aligned_cols=26 Identities=15% Similarity=-0.076 Sum_probs=21.8
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
++| |.+|+..|+|.|+|.|+|.....
T Consensus 54 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~ 80 (202)
T 1vca_A 54 STLTMNPVSFGNEHSYLCTATCESRKL 80 (202)
T ss_dssp EEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred cEEEECcCCHHHCEEEEEEEEECCceE
Confidence 445 88999999999999999976543
No 283
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=88.77 E-value=0.15 Score=42.32 Aligned_cols=18 Identities=11% Similarity=-0.182 Sum_probs=16.5
Q ss_pred EE-EEEEEecCCCcceeEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLL 489 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~ 489 (694)
+| |.+++.+|+|.|+|.+
T Consensus 64 ~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 64 TLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp EEEESSCCTTCCSEEEEEE
T ss_pred EEEEcCCCcccCEEEEEEE
Confidence 45 8999999999999999
No 284
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=88.72 E-value=0.76 Score=43.96 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=21.1
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+++| |.+|+.+|+|.|+|.+.+..
T Consensus 77 ~~sL~I~~v~~~D~G~Y~C~~~~~~ 101 (221)
T 3eow_R 77 DASLRMFGLRVEDEGSYTCLFVTFP 101 (221)
T ss_dssp CCEEECCCSSCCCCSCBEEEEEESS
T ss_pred CceEEEccCChHHCeEEEEEEEeCC
Confidence 5667 99999999999999999854
No 285
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.70 E-value=0.25 Score=41.44 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=25.4
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCL 488 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~ 488 (694)
+.|........... ++.+..++ +| |.+|+.+|+|.|+|.
T Consensus 39 v~W~k~~~~l~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2dku_A 39 VTWRKGLLELRASG-----KHQPSQEGLTLRLTISALEKADSDTYTCD 81 (103)
T ss_dssp CEEEESSCBCCSSS-----SEEEEEETTEEEEEEESCCTTTCSEEEEE
T ss_pred EEEEeCCEECCCCC-----eEEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence 55655554443222 33344445 56 999999999999997
No 286
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=88.66 E-value=0.16 Score=47.15 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=29.1
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+.|........ .....+..+..+++| |.+++..|+|.|+|.++|..
T Consensus 34 v~W~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 34 VSWLYHNEEVT---TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp EEEEC-----C---BCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCccce---eccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 55555543333 112344455566777 99999999999999998864
No 287
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=88.65 E-value=0.14 Score=48.55 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=20.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEEe
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
++| |.+|+.+|+|.|+|.|+|..
T Consensus 156 ~~L~I~~v~~~D~G~Y~C~a~n~~ 179 (196)
T 2d3v_A 156 ALFPVGPVTPSHRWMLRCYGSRRH 179 (196)
T ss_dssp EEEECCCCBTTBCEEEEEEEEETT
T ss_pred eEEEeeecCcccCeeEEEEEEccC
Confidence 555 88999999999999999953
No 288
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=88.51 E-value=0.23 Score=47.96 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=23.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
.+| |.+|+.+|+|.|+|.|+|..+.....
T Consensus 83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~ 112 (226)
T 4f80_A 83 AALRIHNVTASDSGKYLCYFQDGDFYEKAL 112 (226)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEeeCchHHCeeEEEEEECCCcEEEEE
Confidence 456 99999999999999999976655443
No 289
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=88.45 E-value=0.25 Score=47.29 Aligned_cols=35 Identities=6% Similarity=-0.123 Sum_probs=27.4
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
..++| |.+++..|+|.|+|.|+|..+.....+...
T Consensus 183 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 218 (231)
T 3ojm_B 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218 (231)
T ss_dssp CTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEE
Confidence 34556 999999999999999999888765544433
No 290
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=88.40 E-value=0.22 Score=52.60 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=38.2
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
++....+.|.+ +.|...++....... + ....+++| |.+|+..|+|.|+|.|+|..+...
T Consensus 219 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~----~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 285 (384)
T 3kld_A 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKA----R-RHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 285 (384)
T ss_dssp TTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC----E-ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred CCCcEEEEEEEeecCCCcEEEEeCCCccccccc----e-ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence 34556677765 666655543331111 1 12345667 999999999999999999876543
No 291
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=88.26 E-value=0.26 Score=49.16 Aligned_cols=29 Identities=10% Similarity=-0.113 Sum_probs=24.7
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+|+..|+|.|+|.|+|..+.....+
T Consensus 249 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 278 (284)
T 2rik_A 249 SIHILNVDSADIGEYQCKASNDVGSYTCVG 278 (284)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEcCCCcccCEEEEEEEEeCCCceeEEE
Confidence 45 889999999999999999988766544
No 292
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=88.25 E-value=0.28 Score=51.29 Aligned_cols=61 Identities=15% Similarity=-0.031 Sum_probs=40.4
Q ss_pred ceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+....+.|.. +.|.......... .++.+. +++| |.+|+.+|+|.|+|.|+|..+.....+.
T Consensus 309 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 377 (382)
T 1cs6_A 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQ-----NRIEVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377 (382)
T ss_dssp TCCEEEECEEEEESCCEEEEEETTEECCCC-----SSEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CCeEEEEEEeeeecCCEEEEEECCEECCCC-----ceEEEE-CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEE
Confidence 3446677765 5565554443322 223333 4566 9999999999999999999888765544
No 293
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=88.17 E-value=0.23 Score=47.78 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.8
Q ss_pred EecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 467 VTGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 467 ~~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+..+|.| |.+|+.+|+|.|+|.+++..
T Consensus 73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~ 100 (231)
T 2pet_A 73 LDSQGRLVLAEAQVGDERDYVCVVRAGA 100 (231)
T ss_dssp ECTTCCEEESSCCGGGCEEEEEEEECGG
T ss_pred cCCCceEEEcccCcccCceEEEEEEecC
Confidence 6666777 99999999999999999875
No 294
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=88.11 E-value=0.33 Score=46.64 Aligned_cols=23 Identities=9% Similarity=-0.155 Sum_probs=20.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+|+.+|+|.|+|.|+|.
T Consensus 136 ~~~L~i~~v~~~D~G~Y~C~a~n~ 159 (204)
T 3sgj_C 136 NSDFYIPKATLKDSGSYFCRGLVG 159 (204)
T ss_dssp CCCEEESSCCGGGCEEEEEEEEET
T ss_pred CceEEECcCCcccCEEEEEEEEeC
Confidence 3455 8999999999999999993
No 295
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=88.09 E-value=0.81 Score=43.56 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.1
Q ss_pred EEEEEecCCCcceeEEEEEeeecc
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.+|+.+|.|.|+|.|+|..+...
T Consensus 174 i~~v~~~d~G~Y~C~a~n~~g~~~ 197 (222)
T 4i0k_A 174 VLRVVLGANGTYSCLVRNPVLQQD 197 (222)
T ss_dssp EEEEECCTTCEEEEEEEETTTTEE
T ss_pred EEEEEeCCCCEEEEEEECCCCCCc
Confidence 889999999999999999876543
No 296
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=88.07 E-value=0.38 Score=48.75 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=26.3
Q ss_pred cEE-EEEEEecC-CCcceeEEEEEeeeccceeEE
Q psy8879 471 GTV-QVYVQLWT-NYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 471 gtL-~~~v~~~d-~G~YtC~~~n~~~~~~~~~~~ 502 (694)
++| |.+|+..| +|.|+|.|+|..+.....+..
T Consensus 277 ~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l 310 (315)
T 1itb_B 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310 (315)
T ss_dssp EEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEE
T ss_pred EEEEEeecCHHHcCCceEEEEecCCCceeEEEEE
Confidence 356 99999999 999999999998877655443
No 297
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=88.06 E-value=0.35 Score=45.25 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
++| |.+++..|+|.|+|.++|....
T Consensus 68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~ 93 (195)
T 2c5d_C 68 SQLRITSLQLSDTGQYQCLVFLGHQT 93 (195)
T ss_dssp EEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred cEEEEEeccccCCcEEEEEEEeCCCc
Confidence 566 9999999999999999996543
No 298
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=88.02 E-value=0.34 Score=44.84 Aligned_cols=30 Identities=13% Similarity=-0.056 Sum_probs=25.1
Q ss_pred EE-EEEEE-ecCCCcceeEEEEEeeeccceeE
Q psy8879 472 TV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 472 tL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+| |.+++ .+|+|.|+|.|+|..+.....+.
T Consensus 147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~ 178 (184)
T 3b5h_A 147 ELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 178 (184)
T ss_dssp EEEECSCCTTTSSEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeeccccccCceEEEEEEeCCCcceEEEE
Confidence 56 89999 89999999999999887665543
No 299
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=87.94 E-value=0.21 Score=46.66 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=24.0
Q ss_pred EE-EEEEE-ecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQ-LWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |.+++ .+|.|.|+|.|+|..+.....+
T Consensus 154 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~ 184 (190)
T 2wv3_A 154 ELNIVNLQITEDPGEYECNATNSIGSASVST 184 (190)
T ss_dssp EEEECSCCTTTSCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEeccccCCCEEEEEEEEecCCcceeEE
Confidence 56 88999 5999999999999887765543
No 300
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=87.88 E-value=0.44 Score=45.67 Aligned_cols=27 Identities=7% Similarity=-0.251 Sum_probs=19.8
Q ss_pred EecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 467 VTGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 467 ~~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
....+.| |.+|+.+|+|.|+|.|+|..
T Consensus 60 ~~~~~~l~I~~v~~~D~G~Y~C~a~n~~ 87 (213)
T 2x1w_L 60 WDSKKGFTIPSYMISYAGMVFCEAKIND 87 (213)
T ss_dssp EETTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred ccCCccEEEccCChhcCceEEEEEEECC
Confidence 3344445 99999999999999999843
No 301
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=87.88 E-value=0.25 Score=46.70 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=22.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
++| |.+|+.+|+|.|+|.+.|..+...
T Consensus 67 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~ 94 (202)
T 3bp6_B 67 ALFHIPSVQVRDSGQYRCLVICGAAWDY 94 (202)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred eEEEECCCCHHHCcEEEEEEEeCCCcce
Confidence 566 899999999999999999766543
No 302
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=87.78 E-value=0.42 Score=46.22 Aligned_cols=33 Identities=9% Similarity=-0.124 Sum_probs=26.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
.++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus 181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l 214 (241)
T 3grw_A 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214 (241)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred ceEEEECcCCcccCcEEEEEEecCcceEEEEEEE
Confidence 4556 88999999999999999987776544433
No 303
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=87.72 E-value=0.21 Score=46.72 Aligned_cols=31 Identities=10% Similarity=-0.174 Sum_probs=24.9
Q ss_pred cEE-EEE-EEecCCCcceeEEEEEeeeccceeE
Q psy8879 471 GTV-QVY-VQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 471 gtL-~~~-v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
++| +.+ ++..|+|.|+|.|+|..+.....+.
T Consensus 160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 192 (197)
T 2j8h_A 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192 (197)
T ss_dssp EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence 455 777 9999999999999998887655443
No 304
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=87.64 E-value=0.46 Score=43.97 Aligned_cols=28 Identities=11% Similarity=-0.212 Sum_probs=22.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
.++| |.+++..|+|.|+|.++|......
T Consensus 57 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 85 (192)
T 2va4_A 57 NTELTVRNIINSDGGPYVCRATNKAGEDE 85 (192)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred eeEEEEecCChhcCcEEEEEEEccccccc
Confidence 3455 999999999999999998765544
No 305
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=87.58 E-value=0.38 Score=44.47 Aligned_cols=25 Identities=8% Similarity=-0.198 Sum_probs=21.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
.++| |.+++.+|+|.|+|.|+|..+
T Consensus 136 ~~~L~i~~v~~~d~G~Y~C~a~n~~~ 161 (175)
T 1fnl_A 136 NSDFHIPKATLKDSGSYFCRGLVGSK 161 (175)
T ss_dssp CCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEEcccChhhCeEEEEEEEcCCC
Confidence 3555 889999999999999999544
No 306
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=87.48 E-value=0.22 Score=41.79 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=24.9
Q ss_pred EEEeccCccccccceeEeeeeEEecccE---E-EEEEEecCCCcceeE
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGT---V-QVYVQLWTNYDPNCL 488 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gt---L-~~~v~~~d~G~YtC~ 488 (694)
+.|......... ..+..+..++. | |.+|+.+|+|.|+|.
T Consensus 39 v~W~k~~~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2e7b_A 39 VKWCYGNNVLRP-----GDKYSLRQEGAMLELVVRNLRPQDSGRYSCS 81 (103)
T ss_dssp CEEEESSSBCCC-----SSSEEEEECSSEEEEEECSCCTTTCCCEEEE
T ss_pred eEEEECCEECCC-----CCcEEEEEcCCEEEEEEccCCcccCEEEEEE
Confidence 556654443331 12333444453 5 999999999999997
No 307
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=87.44 E-value=0.15 Score=43.63 Aligned_cols=22 Identities=9% Similarity=-0.268 Sum_probs=19.5
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+|+.+|+|.|.|.+.|.
T Consensus 71 ~~L~I~~v~~~DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 71 FTLTISSLEPEDFAMYICQQHNE 93 (108)
T ss_dssp EEEEECSCCTTCCSEEEEEECSS
T ss_pred EEEEECCCCHHHCEEEEEEEccC
Confidence 456 9999999999999999874
No 308
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=87.44 E-value=0.25 Score=45.94 Aligned_cols=31 Identities=10% Similarity=-0.117 Sum_probs=24.3
Q ss_pred cEE-EEEEE-ecCCCcceeEEEEEeeeccceeE
Q psy8879 471 GTV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 471 gtL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
++| +.+++ .+|+|.|+|.|+|..+.....+.
T Consensus 159 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 191 (197)
T 3lcy_A 159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191 (197)
T ss_dssp EEEEESSCCHHHHCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEccccchhhCceEEEEEEcCcCceEEEEE
Confidence 455 78887 48999999999999887765544
No 309
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=87.41 E-value=0.32 Score=46.32 Aligned_cols=24 Identities=8% Similarity=-0.058 Sum_probs=20.7
Q ss_pred EE-EEEEEe-cCCCcceeEEEEEeee
Q psy8879 472 TV-QVYVQL-WTNYDPNCLLTITLYI 495 (694)
Q Consensus 472 tL-~~~v~~-~d~G~YtC~~~n~~~~ 495 (694)
+| |.+++. .|+|.|+|.++|....
T Consensus 65 ~L~i~~v~~~~d~G~Y~C~~~n~~g~ 90 (212)
T 2yd1_A 65 ILRIEPVRAGRDDAPYECVAENGVGD 90 (212)
T ss_dssp EEEESSCCTTTTCSEEEEEEECSSSC
T ss_pred EEEEEecCCCCcCceEEEEEEeCCCC
Confidence 55 889999 9999999999987654
No 310
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*
Probab=87.40 E-value=0.15 Score=45.95 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=27.3
Q ss_pred ccEE-EEEEEe-cCCCcceeEEEEEeeeccceeEEee
Q psy8879 470 LGTV-QVYVQL-WTNYDPNCLLTITLYIDGDVIVQKN 504 (694)
Q Consensus 470 ~gtL-~~~v~~-~d~G~YtC~~~n~~~~~~~~~~~~~ 504 (694)
+.+| +.+++. +|+|.|+|.++..-...+..+..+.
T Consensus 77 naSL~i~~v~~~sD~G~YtC~v~~~~~~~~~~i~Lkv 113 (127)
T 2jjs_C 77 DASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKY 113 (127)
T ss_dssp BCCEEEEHHHHHTSCEEEEEEEEETTEEEEEEEEEEE
T ss_pred cEEEEEcccccccCCcEEEEEEEeCCceEEEEEEEEE
Confidence 3456 999999 6999999999998776666665553
No 311
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=87.31 E-value=0.46 Score=43.27 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=22.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
.+.| |.+++..|+|.|+|.++|..+.
T Consensus 133 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 133 DPTFSIPQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp CCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCeEEEEeccccCCEEEEEEEEeCcCc
Confidence 3455 8899999999999999998765
No 312
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=87.31 E-value=0.36 Score=50.55 Aligned_cols=62 Identities=13% Similarity=-0.104 Sum_probs=41.1
Q ss_pred ccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 433 LDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 433 ~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.++....+.|.. +.|........ . .++.+.+ ++| |.+++.+|+|.|+|.|+|..+.....+.
T Consensus 322 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-~-----~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 391 (395)
T 1bih_A 322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-G-----GRATVTD-SGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391 (395)
T ss_dssp CTTSCEEEECEEEEESCCCCEEEETTEECC-S-----SSEEEET-TEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred cCCCeEEEEEEECcccCCeeEEEECCEECC-C-----CceEEEC-CEEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence 344456777876 45554443332 1 2444444 466 9999999999999999999888765443
No 313
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.29 E-value=0.13 Score=44.55 Aligned_cols=17 Identities=6% Similarity=-0.234 Sum_probs=15.6
Q ss_pred EE-EEEEEecCCCcceeE
Q psy8879 472 TV-QVYVQLWTNYDPNCL 488 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~ 488 (694)
+| |.+++.+|+|.|+|.
T Consensus 71 ~L~I~~v~~~D~G~Y~C~ 88 (115)
T 2cr6_A 71 VLTLRQLALKDSGTIYFE 88 (115)
T ss_dssp CBEECSCCTTTCEEEEEE
T ss_pred EEEEcCCChhhCEEEEEE
Confidence 45 999999999999999
No 314
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=87.29 E-value=0.15 Score=48.40 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=26.1
Q ss_pred eeEEecccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 464 RANVTGLGTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
|+.+..+++| |.+|+.+|+|.|+|.+.+....
T Consensus 63 R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~ 95 (193)
T 2if7_A 63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSA 95 (193)
T ss_dssp TEEECTTCCEEECSCCGGGCEEEEEEEECSSCE
T ss_pred cEEECCCeEEEECCCCcccCceEEEEEEecCCC
Confidence 4455567778 9999999999999999886554
No 315
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=87.21 E-value=0.1 Score=44.21 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=20.6
Q ss_pred cEE-EEEEEecCCCcceeEEEEEee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
.+| |.+|+.+|+|.|+|.+.+...
T Consensus 72 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 96 (109)
T 2oyp_A 72 VSLIIKNVTLDDHGTYCCRIQFPGL 96 (109)
T ss_dssp CCEEECSCCGGGCEEEEEEECCSST
T ss_pred EeEEEccCCChhCeEEEEEEEcCCc
Confidence 456 999999999999999998643
No 316
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=87.20 E-value=0.85 Score=45.96 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=33.5
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.|........... ...++....+++| |.+++..|+|.|+|.++|..+...
T Consensus 140 v~W~k~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 191 (304)
T 2yd9_A 140 ITWFKDFLPVDPSA--SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY 191 (304)
T ss_dssp EEEEETTEECCGGG--GTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEECCEECcCCC--CcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEE
Confidence 55655444333111 1123345566777 999999999999999999776554
No 317
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=87.09 E-value=0.26 Score=42.42 Aligned_cols=22 Identities=5% Similarity=-0.093 Sum_probs=19.4
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
+.+| |.+++.+|+|.|.|.+.+
T Consensus 65 ~~~L~I~~v~~~DsG~Y~C~~~~ 87 (111)
T 2ywz_A 65 SFSLRISDLRVEDSGTYKCQADY 87 (111)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCChhcCEEEEEEEEc
Confidence 3456 999999999999999998
No 318
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=86.98 E-value=1.6 Score=41.45 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=19.4
Q ss_pred EEEecCCCcceeEEEEEeeeccce
Q psy8879 476 YVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 476 ~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
.|+..|.|.|+|.|+|..+.....
T Consensus 181 ~v~~~d~g~Y~C~a~n~~g~~~~~ 204 (222)
T 3sbw_C 181 RINTTTNEIFYCTFRRLDPEENHT 204 (222)
T ss_dssp EEECCTTCEEEEEEEETTTTEEEE
T ss_pred EEeccCCcEEEEEEEeCccceeeE
Confidence 577899999999999987755443
No 319
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=86.91 E-value=0.21 Score=47.20 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=24.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
+++| |.+++.+|+|.|+|.|+|..+....
T Consensus 164 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s 193 (212)
T 2v9r_A 164 GGKLMITYTRKSDAGKYVCVGTNMVGERES 193 (212)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred CCeEEEeeCCHhhCeeEEEEEecccCceec
Confidence 4566 8899999999999999998776543
No 320
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=86.87 E-value=0.63 Score=44.13 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=19.7
Q ss_pred EE-EEEEEecCCCcceeEEEEEe
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+| |.+|+.+|+|.|+|.+.|..
T Consensus 72 ~L~I~~v~~~D~G~Y~C~~~~~~ 94 (213)
T 3nl4_L 72 TLTISDLECADAATYYCQSTYEN 94 (213)
T ss_dssp EEEECSCCGGGCEEEEEEECCSS
T ss_pred EEEECCCChHHCEEEEEecCCCC
Confidence 56 99999999999999999853
No 321
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=86.78 E-value=0.21 Score=50.36 Aligned_cols=30 Identities=10% Similarity=-0.199 Sum_probs=25.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
++| |.+|+..|+|.|+|.|+|..+.....+
T Consensus 276 ~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~ 306 (312)
T 2y23_A 276 CTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306 (312)
T ss_dssp EEEEECSCSGGGCEEEEEEEESTTCCEEEEE
T ss_pred EEEEECcCCHHHCEEEEEEEEcCCCceeeee
Confidence 566 999999999999999999887765543
No 322
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=86.76 E-value=0.25 Score=46.55 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.1
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
..++| |.+++.+|+|.|+|.|+|..+..
T Consensus 167 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 195 (212)
T 1f97_A 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195 (212)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred CCceEEEEecChhhCcEEEEEEccccCCc
Confidence 34566 89999999999999999988766
No 323
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=86.70 E-value=0.43 Score=44.30 Aligned_cols=26 Identities=8% Similarity=-0.322 Sum_probs=21.5
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
.+| |.+++..|+|.|+|.++|.....
T Consensus 63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~ 89 (194)
T 2a38_A 63 AKLTIPAVTKANSGRYSLKATNGSGQA 89 (194)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred EEEEECCCCcccCEEEEEEEEcCCceE
Confidence 355 88999999999999999866543
No 324
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=86.67 E-value=0.29 Score=47.25 Aligned_cols=18 Identities=11% Similarity=-0.306 Sum_probs=17.1
Q ss_pred EEEEEecCCCcceeEEEE
Q psy8879 474 QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n 491 (694)
|.+|+..|+|.|+|.|+|
T Consensus 65 I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 65 MEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp ESCCCGGGCEEEEEEEEE
T ss_pred ECCCChhhCEEEEEEEEC
Confidence 999999999999998887
No 325
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}
Probab=86.64 E-value=0.17 Score=44.67 Aligned_cols=29 Identities=17% Similarity=-0.010 Sum_probs=23.4
Q ss_pred eeEEe-cccEE-EEEEEecCCCcceeEEEEE
Q psy8879 464 RANVT-GLGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 464 ~~n~~-~~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
|..+. ++++| |.+|+..|+|.|+|.+.+.
T Consensus 65 R~~l~~~~~sL~I~nv~~~DsG~Y~c~v~~~ 95 (121)
T 2edo_A 65 RVRLDPQSGALYISKVQKEDNSTYIMRVLKK 95 (121)
T ss_dssp TCEECTTTCCEEESSCCGGGCSEEEEEEEET
T ss_pred cEEEeCCCceEEEeCCCHHHCeEEEEEEEcC
Confidence 44444 56777 9999999999999999864
No 326
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=86.63 E-value=0.28 Score=45.98 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=20.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.++| |.+|+.+|+|.|+|.++|..
T Consensus 143 ~~~L~i~~v~~~D~G~Y~C~a~n~~ 167 (184)
T 2gi7_A 143 RASFPIITVTAAHSGTYRCYSFSSR 167 (184)
T ss_dssp EESSSEEEETTCCSEEEEEEEECTT
T ss_pred eEEEEEccCCccCCeEEEEEEEeCC
Confidence 3445 99999999999999999963
No 327
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=86.55 E-value=0.61 Score=43.86 Aligned_cols=28 Identities=4% Similarity=0.018 Sum_probs=23.2
Q ss_pred EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+.+++.+|.|.|+|.|+|..+.......
T Consensus 161 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 188 (202)
T 3bp6_B 161 VLRLKPQPSRNFSCMFWNAHMKELTSAI 188 (202)
T ss_dssp EEEECCCTTCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEEcCCcccccEEE
Confidence 6689999999999999999887654443
No 328
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=86.53 E-value=0.82 Score=46.52 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=21.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
.+.| |.+|+.+|+|.|+|.++|....
T Consensus 173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 199 (316)
T 3vh8_G 173 KANFSIGPMMLALAGTYRCYGSVTHTP 199 (316)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred eEEEEECCCChhhCceEEEEEecCCCC
Confidence 3455 8999999999999999997653
No 329
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=86.49 E-value=0.5 Score=44.17 Aligned_cols=27 Identities=4% Similarity=-0.155 Sum_probs=22.1
Q ss_pred ecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 468 TGLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
.+.+.| |.+|+.+|+|.|+|.++|...
T Consensus 49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 76 (184)
T 2gi7_A 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSL 76 (184)
T ss_dssp ESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CcccEEEECcCChhhCceEEEEEEcCCC
Confidence 345566 889999999999999999543
No 330
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=86.17 E-value=0.41 Score=44.39 Aligned_cols=47 Identities=15% Similarity=-0.103 Sum_probs=30.4
Q ss_pred EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEeee
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
+.|...++..... ..+..+..++ +| |.+++..|+|.|+|.++|..+.
T Consensus 33 v~W~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 83 (189)
T 2v44_A 33 IDWYNPQGEKIIS----TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 83 (189)
T ss_dssp EEEECTTSCBCCC----CSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred EEEEeCCCCccCC----CceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCCC
Confidence 6677644443311 1233333333 56 9999999999999999987543
No 331
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=86.16 E-value=0.37 Score=47.73 Aligned_cols=32 Identities=13% Similarity=-0.143 Sum_probs=23.8
Q ss_pred cccEEEEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 469 GLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 469 ~~gtL~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
..|.+. .|+.+|+|.|+|.|+|..+.....+.
T Consensus 228 ~~g~~~-~v~~~d~G~Y~C~a~N~~G~~~~~~~ 259 (265)
T 2oz4_A 228 PIGESV-TVTRDLEGTYLCRARSTQGEVTREVT 259 (265)
T ss_dssp CTTSCE-ECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CCCcEE-EeehhhCeEEEEEEECCCCcEEEEEE
Confidence 345543 48899999999999998876655443
No 332
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=86.08 E-value=0.14 Score=42.43 Aligned_cols=23 Identities=4% Similarity=-0.190 Sum_probs=18.5
Q ss_pred cccEE-EEEE-EecCCCcceeEEEE
Q psy8879 469 GLGTV-QVYV-QLWTNYDPNCLLTI 491 (694)
Q Consensus 469 ~~gtL-~~~v-~~~d~G~YtC~~~n 491 (694)
..++| |.+| +.+|+|.|+|+|..
T Consensus 42 ~~~~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 42 HDKHLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred CCCEEEECccCccCcCEEEEEEEcc
Confidence 34666 8896 78999999999864
No 333
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=86.08 E-value=0.19 Score=49.37 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=21.5
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+| |.+|+.+|+|.|+|.+.+..+...
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~ 109 (248)
T 3pv7_A 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQ 109 (248)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEeCCCCHHHCeEEEEEEEeCCccce
Confidence 45 999999999999999998655443
No 334
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=86.04 E-value=0.48 Score=49.65 Aligned_cols=68 Identities=12% Similarity=-0.090 Sum_probs=42.5
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN 504 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~ 504 (694)
++....+.|.. +.|........... ...+.... .++| |.+++.+|+|.|+|.|+|..+..........
T Consensus 326 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~--~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 401 (404)
T 3p3y_A 326 PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP--PNPNREVA-GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401 (404)
T ss_dssp TTCCEEEECEEEEESCCEEEEEETTEEGGGSC--CCTTEEEE-TTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCcEEEEEEccccCCCceEEEECCEecCCCC--CCceEEec-CCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence 34456677765 55655444333111 11122223 4556 9999999999999999999888776655443
No 335
>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}
Probab=85.96 E-value=0.5 Score=40.60 Aligned_cols=23 Identities=4% Similarity=-0.246 Sum_probs=19.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+.+ |.+|+..|+|.|+|.+.+.
T Consensus 59 ~~~l~i~~v~~~dsG~Y~C~~~~~ 82 (108)
T 4hwn_A 59 SSEFQIPTASEDHSGSYWCEAATE 82 (108)
T ss_dssp CCEEEESSCCGGGCEEEEEEEECT
T ss_pred ccEEEeCccCcccCeEEEEEEEeC
Confidence 3445 8899999999999999974
No 336
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=85.85 E-value=0.21 Score=47.09 Aligned_cols=28 Identities=7% Similarity=-0.101 Sum_probs=23.5
Q ss_pred ecccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 468 TGLGTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
.++++| |.+|+.+|+|.|+|.++|....
T Consensus 62 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~ 90 (201)
T 1dr9_A 62 TNNLSIVILALRPSDEGTYECVVLKYEKD 90 (201)
T ss_dssp TTTTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred CCCcEEEEecccchhCeEEEEEEEcCCCC
Confidence 455677 9999999999999999996643
No 337
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=85.84 E-value=0.24 Score=46.87 Aligned_cols=28 Identities=7% Similarity=-0.130 Sum_probs=22.7
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
++++| |.+|+.+|+|.|+|.|.|.....
T Consensus 81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~ 109 (225)
T 4fmk_A 81 RDATLAFRGLRVEDEGNYTCEFATFPNGT 109 (225)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEEEETTEE
T ss_pred CcEEEEEccCCHHHCcceEEEEEeCCCcc
Confidence 34566 99999999999999999865443
No 338
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=85.65 E-value=0.24 Score=50.13 Aligned_cols=26 Identities=15% Similarity=-0.079 Sum_probs=22.3
Q ss_pred EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
+.+|+.+|+|.|+|.|+|.++..+..
T Consensus 268 i~~v~~~d~G~Y~C~A~N~~G~~~~~ 293 (308)
T 4fom_A 268 VHPLTFNYSGVYICKVTNSLGQRSDQ 293 (308)
T ss_dssp CSCCCSCCCSEEEEEEEETTEEEEEE
T ss_pred ECCCChhhCEEEEEEEEeCCCcEEEE
Confidence 67899999999999999998876543
No 339
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=85.60 E-value=0.22 Score=48.12 Aligned_cols=28 Identities=4% Similarity=-0.161 Sum_probs=22.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
..+| |.+|+.+|+|.|+|.|+|..+...
T Consensus 68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 96 (203)
T 4fa8_A 68 TFFLVVTAANISHDGNYLCRMKLGETEVT 96 (203)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEEEccCCHHHCeEEEEEEEcCCCcEE
Confidence 3455 999999999999999999655543
No 340
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=85.53 E-value=0.18 Score=47.61 Aligned_cols=26 Identities=4% Similarity=-0.245 Sum_probs=22.7
Q ss_pred ccEE-EEE-EEecCCCcceeEEEEEeee
Q psy8879 470 LGTV-QVY-VQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 470 ~gtL-~~~-v~~~d~G~YtC~~~n~~~~ 495 (694)
+++| |.+ ++.+|+|.|+|.|+|..+.
T Consensus 43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~ 70 (186)
T 1jbj_A 43 DKHLVLQDFSEVEDSGYYVCYTPASNKN 70 (186)
T ss_dssp CSEEEEESCCTTTSCEEEEEECSSCCCC
T ss_pred CCEEEECCCCccccCEEEEEEEEeCCCc
Confidence 4567 889 9999999999999998766
No 341
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=85.52 E-value=0.23 Score=43.03 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=20.2
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
++++| |.+|+.+|+|.|+|.+.+...
T Consensus 79 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 105 (124)
T 1neu_A 79 KDGSIVIHNLDYSDNGTFTCDVKNPPD 105 (124)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEC---
T ss_pred CeEEEEEccCChhhCEEEEEEEEcCCC
Confidence 34566 999999999999999998654
No 342
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=85.49 E-value=0.68 Score=42.69 Aligned_cols=23 Identities=4% Similarity=-0.122 Sum_probs=20.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+++.+|+|.|+|.|+|.
T Consensus 133 ~~~L~i~~v~~~d~G~Y~C~a~n~ 156 (176)
T 1f2q_A 133 NHNISITNATVEDSGTYYCTGKVW 156 (176)
T ss_dssp SSEEEESSCCGGGCEEEEEEEEET
T ss_pred CCeEEECCCCcccCEEEEEEEEeC
Confidence 3556 8899999999999999995
No 343
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=85.46 E-value=0.2 Score=42.81 Aligned_cols=25 Identities=8% Similarity=-0.177 Sum_probs=21.2
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
++++| |.+|+.+|+|.|+|.+.+..
T Consensus 71 ~~~sL~I~~v~~~DsG~Y~C~v~~~~ 96 (110)
T 2ptt_A 71 NNGALHISNVRKEDKGTYYMRVLRET 96 (110)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEESSS
T ss_pred CCccEEECCCCcccCeEEEEEEEcCC
Confidence 56677 99999999999999997643
No 344
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=85.38 E-value=0.55 Score=40.06 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=18.9
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+..|+|.|+|.+.|.
T Consensus 57 ~l~I~~v~~~dsG~Y~C~~~n~ 78 (105)
T 2vsd_A 57 EFSFAVTNLEDAGTYQCRYQVS 78 (105)
T ss_dssp EEEEECCSGGGCEEEEEEEEEE
T ss_pred EEEECCCCHHHCeEEEEEEEcC
Confidence 44 8899999999999999996
No 345
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=85.02 E-value=0.59 Score=43.50 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=20.8
Q ss_pred cccEE-EEEEEecCCCcceeEEEEE
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+++| |.+++..|+|.|+|.++|.
T Consensus 54 ~~~~L~i~~~~~~d~G~Y~C~~~n~ 78 (190)
T 2wv3_A 54 SNMEYRINKPRAEDSGEYHCVYHFV 78 (190)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEET
T ss_pred ccEEEEEecCCcccCEEEEEEEEeC
Confidence 34566 8999999999999999986
No 346
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=85.00 E-value=1 Score=42.27 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=21.8
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+| |.+++..|.|.|+|.|+|..+...
T Consensus 182 ~L~i~~~~~~d~g~YtC~a~N~~~~~~ 208 (225)
T 4fmk_A 182 RYSLVPVGRADGVKVTCRVEHESFEEP 208 (225)
T ss_dssp EEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred EEEEeeCCHHHCCEEEEEEEcCCCCeE
Confidence 45 888999999999999999776554
No 347
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.89 E-value=0.87 Score=39.78 Aligned_cols=46 Identities=9% Similarity=-0.139 Sum_probs=28.4
Q ss_pred EEEeccCcccccccee-----EeeeeEEeccc---EE-EEEEEecCCCcceeEEE
Q psy8879 445 ILALVPTLTSQPLSYV-----TSLRANVTGLG---TV-QVYVQLWTNYDPNCLLT 490 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i-----~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~ 490 (694)
+.|.......+..... ...++.+..+| +| |.+|+.+|+|.|+|.+-
T Consensus 38 v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~ 92 (112)
T 2e6q_A 38 GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSC 92 (112)
T ss_dssp CEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEE
T ss_pred EEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEE
Confidence 6676666555522100 00055566666 45 99999999999987443
No 348
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=84.83 E-value=0.57 Score=43.72 Aligned_cols=27 Identities=4% Similarity=-0.102 Sum_probs=21.0
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
..++| |.+++ |+|.|+|.|+|..+...
T Consensus 156 ~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~ 183 (195)
T 2c5d_C 156 PQRSLHVPGLN--KTSSFSCEAHNAKGVTT 183 (195)
T ss_dssp CCEEEEECCCS--SCEEEEEEEEETTEEEE
T ss_pred CCCeEEEcccc--cCceEEEEEEcCCCceE
Confidence 44566 66665 89999999999887664
No 349
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=84.81 E-value=0.53 Score=47.97 Aligned_cols=61 Identities=10% Similarity=-0.061 Sum_probs=39.2
Q ss_pred cccceeeeeceeE--------EEEeccCccccccceeEeeeeEEecccEE-EE-EEEecCCCcceeEEEEEeeecccee
Q psy8879 432 ILDQSALVLGCSE--------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QV-YVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 432 ~~~~~~~~l~c~~--------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~-~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
..++....+.|.. +.|...++..... ..+ ..++| |. +|+..|+|.|+|.|+|..+.....+
T Consensus 244 ~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~-------~~~-~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~ 314 (331)
T 3u83_A 244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-------VEA-QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV 314 (331)
T ss_dssp BTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT-------EEE-ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc-------cee-cCcEEEEeCCCccccCeEEEEEEEeccccceEEE
Confidence 3344556677766 4555444433311 112 34666 77 7999999999999999988764443
No 350
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A
Probab=84.76 E-value=0.38 Score=42.13 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=18.0
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+|+.+|+|.|+|.+.+
T Consensus 94 sL~I~~v~~~D~G~Y~C~v~~ 114 (128)
T 3r0n_A 94 TLALHGLTVEDEGNYTCEFAT 114 (128)
T ss_dssp CEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEccCCchhCeEEEEEEEe
Confidence 56 999999999999999865
No 351
>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Probab=84.66 E-value=0.25 Score=43.64 Aligned_cols=25 Identities=12% Similarity=-0.120 Sum_probs=21.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
+.+| |.+|+.+|+|.|+|.+.+...
T Consensus 91 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 116 (135)
T 1xt5_A 91 APTLRLTHVHPQDGGRYWCQVAQWSI 116 (135)
T ss_dssp SCCEEECSCCGGGCEEEEEEEECSSC
T ss_pred CCeEEECCCChhhCcEEEEEEEcCCc
Confidence 4566 999999999999999998654
No 352
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=84.54 E-value=0.87 Score=43.09 Aligned_cols=21 Identities=5% Similarity=-0.066 Sum_probs=17.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+|+ |+|.|+|.+++.
T Consensus 162 ~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 162 QADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EEEEEEEECC--SCEEEEEEEEET
T ss_pred EEEEEeCCcC--CCeeEEEEEEcC
Confidence 3555 88898 999999999863
No 353
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=84.53 E-value=0.37 Score=45.48 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=21.4
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
..++| |.+|+.+|+|.|+|.+.|...
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (196)
T 2d3v_A 56 NKARFSIPSMTEHHAGRYRCYYYSPAG 82 (196)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cccEEEeccCChhHCeEEEEEEeCCCC
Confidence 34556 889999999999999988644
No 354
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=84.48 E-value=0.45 Score=45.17 Aligned_cols=23 Identities=4% Similarity=-0.204 Sum_probs=20.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+++| |.+|+.+|+|.|+|.++|.
T Consensus 70 ~~~L~I~~v~~~D~G~Y~C~~~~~ 93 (213)
T 3r06_A 70 DSSFTISSLESEDIGSYYCQQYYN 93 (213)
T ss_dssp EEEEEESSCCGGGCSEEEEEECSS
T ss_pred EEEEEECCCCcccCEEEEEecccC
Confidence 3466 9999999999999999875
No 355
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=84.47 E-value=1.9 Score=46.42 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=20.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+|+..|+|.|+|.|+|.
T Consensus 289 ~~~L~I~~v~~~D~G~Y~C~A~N~ 312 (423)
T 3qs7_E 289 ILFAFVSSVARNDTGYYTCSSSKH 312 (423)
T ss_dssp EEEEEESSCCTTTCEEEEEEETTE
T ss_pred EEEEEEeecCHHHCEEEEEEEecC
Confidence 4556 9999999999999999998
No 356
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=84.36 E-value=0.66 Score=46.20 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=21.7
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
..++| |.+++.+|+|.|+|.++|..+
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g 86 (291)
T 1qz1_A 60 DSSTLTIYNANIDDAGIYKCVVTAEDG 86 (291)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred CeEEEEEecCCCCCCEEEEEEEEcCCC
Confidence 34566 889999999999999998753
No 357
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=84.33 E-value=0.32 Score=44.83 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.8
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++| |.+++..|+|.|+|.++|.
T Consensus 60 ~~L~i~~~~~~d~G~Y~C~~~~~ 82 (182)
T 1rhf_A 60 GFLSLKSVERSDAGRYWCQVEDG 82 (182)
T ss_dssp EEEEESSCCGGGCEEEEEEESSC
T ss_pred EEEEEeecCcccCeEEEEEEEcC
Confidence 566 8999999999999999986
No 358
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=84.32 E-value=0.15 Score=49.16 Aligned_cols=26 Identities=8% Similarity=-0.238 Sum_probs=23.3
Q ss_pred ccEE-EEEE-EecCCCcceeEEEEEeee
Q psy8879 470 LGTV-QVYV-QLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 470 ~gtL-~~~v-~~~d~G~YtC~~~n~~~~ 495 (694)
.++| |.+| +.+|+|.|+|.|+|..+.
T Consensus 165 ~~~L~I~~v~~~~D~G~Y~C~A~N~~g~ 192 (204)
T 1sy6_A 165 EDHLSLKEFSELEQSGYYVCYPRGSKPE 192 (204)
T ss_dssp TTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred CCEEEEeeCCccccCEEEEEEeccCCCC
Confidence 5666 8999 999999999999998885
No 359
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=84.30 E-value=0.28 Score=46.17 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=23.1
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+++| |.+|+.+|+|.|+|.++|..+..+
T Consensus 83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~ 111 (214)
T 3jz7_A 83 DASINVTNLQLSDIGTYQCKVKKAPGVAN 111 (214)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred cccEEEccCChhhCeEEEEEEEeCCCccc
Confidence 4566 999999999999999998765443
No 360
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=84.22 E-value=0.21 Score=42.67 Aligned_cols=30 Identities=23% Similarity=0.083 Sum_probs=22.4
Q ss_pred cEE-EEEEEecCCCcceeEEEEE---eeecccee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT---LYIDGDVI 500 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~---~~~~~~~~ 500 (694)
.+| |.+++.+|+|.|.|.+.+. .|..+..+
T Consensus 71 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~l 104 (108)
T 1qfw_M 71 FTLTISSVQAEDFADYHCGQTYNHPYTFGGGTKL 104 (108)
T ss_dssp EEEEESSCCTTCCSEEEEEECSSSSCEECCCEEE
T ss_pred EEEEECCCChhhCEEEEEEEccCCceEECCCEEE
Confidence 355 9999999999999999873 34444433
No 361
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Probab=84.22 E-value=0.31 Score=42.53 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=20.0
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+.+| |.+|+.+|+|.|.|.++.-.
T Consensus 77 ~~sL~I~~v~~~D~G~Y~C~v~~~~ 101 (119)
T 2pnd_A 77 DVSLQINTLQMDDRNHYTCEVTWQT 101 (119)
T ss_dssp BCCEEESSCCGGGCEEEEEEEEEEC
T ss_pred CEEEEEccCCcccCEEEEEEEEECc
Confidence 4456 99999999999999997643
No 362
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=84.05 E-value=0.46 Score=40.61 Aligned_cols=29 Identities=10% Similarity=0.034 Sum_probs=22.1
Q ss_pred cEE-EEEEEecCCCcceeEEEE---Eeeeccce
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI---TLYIDGDV 499 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n---~~~~~~~~ 499 (694)
.+| |.+++.+|+|.|.|.+.+ ..|..|..
T Consensus 72 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~ 104 (109)
T 1pew_A 72 ASLTISGLKTEDEADYYCQSYDARNVVFGGGTR 104 (109)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEECCCChhhCEEEEEEEEeCCceEECCCEE
Confidence 355 999999999999999987 34444443
No 363
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=83.98 E-value=0.46 Score=45.57 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=19.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++| |.+++.+|+|.|+|.++|.
T Consensus 54 ~~L~i~~v~~~D~G~Y~C~a~n~ 76 (204)
T 3sgj_C 54 SSYFIDAATVDDSGEYRCQTQLS 76 (204)
T ss_dssp SEEEESSCCGGGCEEEEEEETTS
T ss_pred cEEEEecccccCCEEEEEEeCCC
Confidence 566 8999999999999999874
No 364
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=83.94 E-value=0.81 Score=43.32 Aligned_cols=25 Identities=8% Similarity=-0.152 Sum_probs=21.2
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
++++| |.+|+.+|+|.|+|.+.|..
T Consensus 66 ~~~~L~I~~v~~~D~G~Y~C~~~~~~ 91 (211)
T 3tv3_L 66 NTASLTVSGLQTDDEAVYYCGSLVGN 91 (211)
T ss_dssp TEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred CEEEEEECCCChhHCEEEEEEEecCC
Confidence 34456 99999999999999999954
No 365
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=83.77 E-value=0.62 Score=44.40 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=20.4
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+++| |.+|+.+|+|.|+|.+.+.
T Consensus 71 ~~sL~I~~v~~~D~G~Y~C~~~~~ 94 (222)
T 4i0k_A 71 NASLRLQRVRVTDEGSYTCFVSIQ 94 (222)
T ss_dssp BCCEEECSCCGGGCSCEEEEEEEC
T ss_pred eEEEEECCcccccCEEEEEEEEeC
Confidence 4566 9999999999999999985
No 366
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=83.70 E-value=0.47 Score=48.73 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=24.2
Q ss_pred EE-EEEEEecCC-CcceeEEEEEeeeccce
Q psy8879 472 TV-QVYVQLWTN-YDPNCLLTITLYIDGDV 499 (694)
Q Consensus 472 tL-~~~v~~~d~-G~YtC~~~n~~~~~~~~ 499 (694)
+| |.+|+..|+ |.|+|.|+|.++.+...
T Consensus 299 ~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~ 328 (339)
T 3o4o_C 299 PLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328 (339)
T ss_dssp CCEECSSCCCSCCCCCEEEEEETTEEECCB
T ss_pred EEEEEEechhhcCccEEEEEEeccCceEEE
Confidence 45 899999998 99999999998887654
No 367
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*
Probab=84.18 E-value=0.22 Score=42.87 Aligned_cols=22 Identities=9% Similarity=-0.111 Sum_probs=19.5
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+|+.+|+|.|.|.+.+.
T Consensus 71 ~~L~I~~v~~~DsG~Y~C~~~~~ 93 (110)
T 1u3h_A 71 LSLHIADSQPGDSATYFCAASAN 93 (110)
Confidence 456 9999999999999999874
No 368
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=83.65 E-value=0.37 Score=44.87 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=21.4
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.+++| |.+|+..|+|.|+|.+.|..
T Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~~~~~~ 89 (201)
T 3s97_C 64 TNGNLYIANVEASDKGNYSCFVSSPS 89 (201)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred CCCeEEECcCCcccCeEEEEEEEecC
Confidence 45666 99999999999999999855
No 369
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=83.62 E-value=0.42 Score=40.83 Aligned_cols=22 Identities=5% Similarity=-0.083 Sum_probs=19.4
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
+.+| |.+++.+|+|.|.|.+.+
T Consensus 65 ~~~L~I~~~~~~DsG~Y~C~~~~ 87 (108)
T 2coq_A 65 SASLTIRDLRVEDSGTYKCKAYR 87 (108)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCCcccCEEEEEEEEe
Confidence 3456 999999999999999998
No 370
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=83.60 E-value=0.55 Score=47.39 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=21.2
Q ss_pred cEE-EEEEEe-cCCCcceeEEEEEeeec
Q psy8879 471 GTV-QVYVQL-WTNYDPNCLLTITLYID 496 (694)
Q Consensus 471 gtL-~~~v~~-~d~G~YtC~~~n~~~~~ 496 (694)
.+| |.+++. .|+|.|+|.++|..+..
T Consensus 63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~ 90 (304)
T 2yd9_A 63 AVLRIQPLRTPRDENVYECVAQNSVGEI 90 (304)
T ss_dssp EEEEECSCCTTTTCSEEEEEEECSSCEE
T ss_pred eEEEEecccccCCCeEEEEEEECCCCeE
Confidence 345 889998 99999999999866553
No 371
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=83.52 E-value=0.86 Score=41.86 Aligned_cols=27 Identities=7% Similarity=-0.149 Sum_probs=20.7
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
..++| +.++ +|+|.|+|.|+|..+...
T Consensus 146 ~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~ 173 (182)
T 1rhf_A 146 SPSVLNVTGV--TQSTMFSCEAHNLKGLAS 173 (182)
T ss_dssp SSEEEEECCC--SSCEEEEEEEEETTEEEE
T ss_pred CceEEEEecc--ccCeEEEEEEECCCCCcc
Confidence 34555 6666 699999999999987664
No 372
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=83.51 E-value=0.27 Score=46.39 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=24.0
Q ss_pred eeEE-ecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 464 RANV-TGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 464 ~~n~-~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
|..+ .++++| |.+|+.+|+|.|+|.+.+..
T Consensus 61 R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 92 (180)
T 2dru_A 61 RVDLDKTNGALRIYNVSKEDRGDYYMRMLHET 92 (180)
T ss_dssp TEEECTTTCCEEECSCCGGGCEEEEEEEESSS
T ss_pred eEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC
Confidence 4455 567777 99999999999999986643
No 373
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=83.46 E-value=0.75 Score=51.33 Aligned_cols=31 Identities=0% Similarity=-0.348 Sum_probs=25.7
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
+.++| |.+|+..|+|.|+|.|+|..+.....
T Consensus 376 ~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~ 407 (527)
T 3qs9_E 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKM 407 (527)
T ss_dssp SSSEEEEECCCTTCCSCEEEEEEETTEEEEEE
T ss_pred CCcEEEEecCCcccCEEEEEEEEeCCCcEEEE
Confidence 34566 99999999999999999988876553
No 374
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=83.34 E-value=0.29 Score=46.01 Aligned_cols=28 Identities=7% Similarity=-0.117 Sum_probs=24.0
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
..++| |.+++.+|.|.|+|.|+|..+..
T Consensus 169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 197 (209)
T 1nbq_A 169 TTGELVFDPLSASDTGEYSCEARNGYGTP 197 (209)
T ss_dssp TTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred CcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence 34566 88999999999999999988776
No 375
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=83.27 E-value=0.51 Score=51.04 Aligned_cols=24 Identities=0% Similarity=-0.316 Sum_probs=19.7
Q ss_pred EEEEEecCCCcceeEEEEEeeecc
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
|.+|+.+|+|.|+|.|+|..+...
T Consensus 107 I~~v~~~D~G~Y~C~a~N~~g~~~ 130 (423)
T 3qs7_E 107 ILKMTETQAGEYLLFIQSEATNYT 130 (423)
T ss_dssp ESSCCSSSCSEEEEEEEC--CEEE
T ss_pred EeecCcccCEEEEEEEEcCCCcEE
Confidence 889999999999999999876554
No 376
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.26 E-value=0.49 Score=42.13 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=19.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+.+| |.+|+.+|+|+|.|.+.+.
T Consensus 78 ~~~L~I~~v~~~DsG~Y~C~~~~~ 101 (136)
T 2d9c_A 78 DFSISISNITPADAGTYYCVKFRK 101 (136)
T ss_dssp BCCEEESSCCTTTCEEEEEEEEEC
T ss_pred EEEEEECCCCHHHCEEEEEEEEeC
Confidence 3456 9999999999999999873
No 377
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=83.08 E-value=0.77 Score=42.78 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=24.8
Q ss_pred EEEEEecCCCcceeEEEEEeeeccceeEEeeccCC
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCS 508 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~ 508 (694)
+.+++..|+|.|+|.|+|.++... +...++|+
T Consensus 144 i~~~~~~d~G~Y~C~a~N~~g~~~---~~~~l~~~ 175 (176)
T 1hng_A 144 MSYQWTNLRAPFKCKAVNRVSQES---EMEVVNCP 175 (176)
T ss_dssp EEEECSCCSSCEEEEEEETTEEEE---EEECCCCC
T ss_pred EEEEEccCCeEEEEEEEecCCCce---ecccccCC
Confidence 558889999999999999877554 44556664
No 378
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=83.03 E-value=0.5 Score=47.18 Aligned_cols=25 Identities=4% Similarity=-0.104 Sum_probs=19.0
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
++| |.+++..|+|.|+|.++|..+.
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~ 76 (289)
T 3mjg_X 51 SVLTLTNLTGLDTGEYFCTHNDSRGL 76 (289)
T ss_dssp EEEEECSCCGGGCEEEEEECCC----
T ss_pred EEEEEccCChhhCEEEEEEEcccCCC
Confidence 456 9999999999999999987654
No 379
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=82.99 E-value=0.85 Score=47.78 Aligned_cols=59 Identities=17% Similarity=0.007 Sum_probs=36.9
Q ss_pred eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
....+.|.. +.|.......... ..+..+.+.++| |.+++..|+|.|+|.|+|..+....
T Consensus 237 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 303 (403)
T 3laf_A 237 KDAVLECCVSGYPPPSFTWLRGEEVIQLR----SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISA 303 (403)
T ss_dssp SCEEECCEEEEESCCEEEEEETTEECCCS----SSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred CcEEEEEEcCCCCCCeEEEEECCeeccCC----CceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEE
Confidence 445556654 5565544333311 122334455667 8999999999999999997655433
No 380
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=82.95 E-value=0.65 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++| |.+|+.+|+|.|+|.++|.
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~ 106 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLK 106 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEECCCCHhHCEEEEEEEEec
Confidence 566 9999999999999999984
No 381
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=82.86 E-value=1.4 Score=49.09 Aligned_cols=28 Identities=7% Similarity=-0.156 Sum_probs=23.6
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
++| |.+|+..|+|.|+|.|+|..+..+.
T Consensus 509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 537 (585)
T 2ocw_A 509 VSLTLNLVTRADEGWYWCGVKQGHFYGET 537 (585)
T ss_pred EEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence 356 9999999999999999998875443
No 382
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=82.81 E-value=0.75 Score=45.63 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=21.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
.++| |.+++..|+|.|+|.++|..+.
T Consensus 60 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 86 (284)
T 2rik_A 60 TATLTVLKVTKGDAGQYTCYASNVAGK 86 (284)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred EEEEEEecCCcccCEEEEEEEEECCce
Confidence 3556 8999999999999999986544
No 383
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=82.74 E-value=0.67 Score=40.34 Aligned_cols=22 Identities=14% Similarity=-0.080 Sum_probs=19.2
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+++.+|+|.|.|.+.+.
T Consensus 73 ~~L~I~~~~~~DsG~Y~C~~~~~ 95 (120)
T 1oaq_L 73 AALTITGAQTEDEAIYFCALWYS 95 (120)
T ss_dssp EEEEEESCCGGGCEEEEEEEEET
T ss_pred EEEEECCCChhhCeEEEEEEccC
Confidence 356 9999999999999999873
No 384
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=82.73 E-value=1.4 Score=41.33 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=21.7
Q ss_pred EEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 475 VYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 475 ~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
..++.+|.|.|+|.|+|..+...+.+..
T Consensus 170 ~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 170 LDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEEEecCCCEEEEEEecCcceeeeEEec
Confidence 4566779999999999988776665543
No 385
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=82.72 E-value=0.51 Score=49.33 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=23.6
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
.++| |.+++.+|+|.|+|.|+|..+...
T Consensus 269 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 297 (388)
T 2v5m_A 269 SGTLIIKDAVVEDSGKYLCVVNNSVGGES 297 (388)
T ss_dssp TTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred cCEEEECcCCHHHCeEEEEEEecCCCcee
Confidence 4566 889999999999999999877643
No 386
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=82.70 E-value=0.55 Score=45.07 Aligned_cols=25 Identities=16% Similarity=-0.069 Sum_probs=21.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
++| |.+++..|+|.|+|.|+|..+.
T Consensus 165 ~~L~i~~v~~~d~G~Y~C~a~n~~g~ 190 (218)
T 3k0w_A 165 KLYMVPYVDLEHQGTYWCHVYNDRDS 190 (218)
T ss_dssp SEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred CEEEEeecChhcCEEEEEEEEcCCCC
Confidence 455 8899999999999999996654
No 387
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=82.57 E-value=0.74 Score=43.25 Aligned_cols=22 Identities=9% Similarity=-0.291 Sum_probs=17.9
Q ss_pred EEEEEecCCCcceeEEEEEeee
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
+.+++..|+|.|+|.++|....
T Consensus 76 i~~~~~~d~G~Y~C~~~n~~g~ 97 (212)
T 2v9r_A 76 HGRKSRPDEGVYVCVARNYLGE 97 (212)
T ss_dssp CCSSCCCSCEEEEEEEEETTEE
T ss_pred ecCCCcccCeEEEEEEECCCCc
Confidence 3467899999999999986554
No 388
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=82.33 E-value=0.58 Score=44.46 Aligned_cols=23 Identities=4% Similarity=-0.214 Sum_probs=19.3
Q ss_pred EEEEEecCCCcceeEEEEEeeec
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
+.+++..|+|.|+|.++|..+..
T Consensus 73 i~~v~~~d~G~Y~C~~~n~~g~~ 95 (217)
T 2vr9_A 73 MQGKKEQDGGEYWCVAKNRVGQA 95 (217)
T ss_dssp CBSSSCBCCEEEEEEEEETTEEE
T ss_pred eccCCcccCceEEEEEecCCCcc
Confidence 67789999999999999866543
No 389
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=82.21 E-value=0.52 Score=44.45 Aligned_cols=23 Identities=4% Similarity=-0.517 Sum_probs=20.0
Q ss_pred E-EEEEEecCCCcceeEEEEEeee
Q psy8879 473 V-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 473 L-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
| |.+++..|+|.|+|.++|....
T Consensus 61 L~i~~v~~~D~G~Y~C~~~n~~~~ 84 (212)
T 2r15_A 61 LQINEPTPNDKGKYVMELFDGKTG 84 (212)
T ss_dssp EEEESCCGGGCEEEEEEEECSSCE
T ss_pred EEECCCCcccCEEEEEEEecCCcc
Confidence 5 9999999999999999985443
No 390
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=82.13 E-value=0.53 Score=46.59 Aligned_cols=37 Identities=5% Similarity=-0.126 Sum_probs=28.0
Q ss_pred cEE-EEEEEecCCCcceeEEEEE----eeeccceeEEeeccC
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT----LYIDGDVIVQKNTNC 507 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~----~~~~~~~~~~~~~~~ 507 (694)
++| |.+|+.+|+|.|+|.|+|. .|-.|..+......+
T Consensus 210 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~~~ 251 (256)
T 3tf7_C 210 FFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLELEH 251 (256)
T ss_dssp CEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEECGGG
T ss_pred EEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEcccc
Confidence 456 8999999999999999985 466666655554433
No 391
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=81.86 E-value=0.5 Score=38.77 Aligned_cols=28 Identities=11% Similarity=-0.270 Sum_probs=15.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+++| +.++...+.|.|.|.+++...+..
T Consensus 34 ~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~ 62 (79)
T 1xiw_B 34 ITRLDLGKRILDPRGIYRCNGTDIYKDKE 62 (79)
T ss_dssp GTEEEEEEGGGCCEEEEEEC--------C
T ss_pred CCeEEeccCcCCCCeEEEecCCCCCCccc
Confidence 4666 667778889999999988877544
No 392
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=81.74 E-value=0.54 Score=41.49 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=19.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+.+| |.+|+.+|+|.|.|.+.+.
T Consensus 73 ~~~L~I~~v~~~DsG~Y~C~~~~~ 96 (127)
T 2jju_A 73 DFSISISNITPADAGTYYCVKFRK 96 (127)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEEC
T ss_pred EEEEEECCCCHHHCEEEEEEEEcC
Confidence 4456 9999999999999999874
No 393
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=81.61 E-value=0.59 Score=44.29 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=19.4
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++.| |.+|+.+|+|.|+|.++|.
T Consensus 62 ~~~l~I~~v~~~D~G~Y~C~a~~~ 85 (201)
T 1nkr_A 62 KANFSISRMTQDLAGTYRCYGSVT 85 (201)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEBT
T ss_pred eEEEEeccCCcccCeEEEEeEecC
Confidence 3555 8899999999999999864
No 394
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=81.46 E-value=1.2 Score=44.07 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=21.1
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.++.| |.+|+..|+|.|+|.++|..
T Consensus 150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~ 175 (242)
T 1p6f_A 150 VQAEFPLGPVTTAHRGTYRCFGSYNN 175 (242)
T ss_dssp SEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred ceEEEEeCCCccccCEEEEEEEECCC
Confidence 34555 99999999999999999864
No 395
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=81.43 E-value=0.22 Score=42.84 Aligned_cols=23 Identities=9% Similarity=-0.216 Sum_probs=19.8
Q ss_pred cEE-EEEEEecCCCcceeEEEEEe
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.+| |.+|+.+|+|.|.|.+.+..
T Consensus 73 ~sL~I~~v~~~DsG~Y~C~v~~~~ 96 (116)
T 2or8_A 73 VSLTIENSVESDSGLYCCRVEIPG 96 (116)
T ss_dssp CCEEESSCCGGGCEEEEEEECCSS
T ss_pred EEEEECCCCcccCEEEEEEEEcCC
Confidence 455 99999999999999998753
No 396
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=81.42 E-value=0.51 Score=48.21 Aligned_cols=28 Identities=7% Similarity=-0.131 Sum_probs=22.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
.++| |.+++..|+|.|+|.++|..+...
T Consensus 179 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 207 (334)
T 1ry7_B 179 QWSLVMESVVPSDRGNYTCVVENKFGSIR 207 (334)
T ss_dssp TTEEEECSCCGGGCCCEEEEEEETTEEEE
T ss_pred eEEEEECCCCcccCEEEEEEEEeCCCCEE
Confidence 4456 889999999999999999765543
No 397
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=81.25 E-value=0.27 Score=42.12 Aligned_cols=22 Identities=14% Similarity=-0.237 Sum_probs=19.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+++.+|+|.|.|.+.+.
T Consensus 73 ~~L~I~~v~~~DsG~Y~C~~~~~ 95 (109)
T 2q20_A 73 FTFTISSLQPEDIATYYCQQYDN 95 (109)
T ss_dssp EEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEECCCChhhCEEEEEEEeeC
Confidence 456 9999999999999999863
No 398
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=81.19 E-value=0.67 Score=43.92 Aligned_cols=22 Identities=14% Similarity=-0.159 Sum_probs=19.8
Q ss_pred EE-EEEEEecCCCcceeEEEEEe
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+| |.+|+.+|+|.|+|.+.|..
T Consensus 72 ~L~I~~v~~~D~G~Y~C~~~~~~ 94 (213)
T 3d9a_L 72 TLSINSVETEDFGMYFCQQSNSW 94 (213)
T ss_dssp EEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEECCCChhhCEEEEEeeecCC
Confidence 66 99999999999999999864
No 399
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=81.14 E-value=0.56 Score=47.95 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=25.0
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+| |.+++..|+|.|+|.|+|..+.....+.
T Consensus 292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 322 (334)
T 1ry7_B 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322 (334)
T ss_dssp CEEECSCCTTSCSEEEEEEEESSCCEEEEEE
T ss_pred EEEEccCCHHHCEEEEEEEeCCCCeEEEEEE
Confidence 56 8899999999999999999887655443
No 400
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=81.09 E-value=1.5 Score=41.76 Aligned_cols=21 Identities=5% Similarity=-0.246 Sum_probs=19.5
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.+.|.
T Consensus 82 ~L~I~~v~~~D~G~Y~C~~~~~ 103 (220)
T 1pz5_B 82 YLQMNNLRAEDTGIYYCTRGGA 103 (220)
T ss_dssp EEEECSCCGGGCEEEEEEEECT
T ss_pred EEEEccCCHHHCEEEEEEEecC
Confidence 66 9999999999999999986
No 401
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=81.05 E-value=1.1 Score=44.33 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=19.8
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
+++| |.+|+.+|+|.|+|.+.+
T Consensus 99 ~~sL~I~~v~~~D~G~Y~C~~~~ 121 (268)
T 3pl6_D 99 VSTLKIQRTERGDSAVYLCATSA 121 (268)
T ss_dssp SEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCCcccCEEEEEEEec
Confidence 4567 999999999999999987
No 402
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=81.04 E-value=0.62 Score=44.42 Aligned_cols=29 Identities=10% Similarity=-0.138 Sum_probs=22.7
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+| |..+...|+|.|+|.|+|.........
T Consensus 180 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 209 (216)
T 2xzc_L 180 TLTLSKADYEKHKVYACEVTHQGLSSPVTK 209 (216)
T ss_dssp EEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred EEEECHHHhCCCCcEEEEEEcCCCCCceEE
Confidence 44 778888999999999999876654333
No 403
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=80.93 E-value=0.29 Score=43.96 Aligned_cols=22 Identities=18% Similarity=-0.065 Sum_probs=19.6
Q ss_pred EE-EEEEEecCCCcceeEEEEEe
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+| |.+++.+|+|.|+|.+.|..
T Consensus 78 ~L~I~~~~~~DsG~Y~C~a~n~~ 100 (133)
T 3khq_A 78 TLTIQNIQYEDNGIYFCKQKCDS 100 (133)
T ss_dssp EEEECSCCGGGCEEEEEEESSCC
T ss_pred EEEECCCChHHCEEEEEEEEeCC
Confidence 45 99999999999999999864
No 404
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=80.82 E-value=0.58 Score=45.46 Aligned_cols=24 Identities=13% Similarity=-0.166 Sum_probs=20.6
Q ss_pred cccEE-EEEEEecCCCcceeEEEEE
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
..++| |.+|+.+|+|.|+|.++|.
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~C~a~n~ 179 (218)
T 1uct_A 155 HPANFSLGPVDLNVSGIYRCYGWYN 179 (218)
T ss_dssp SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred ccCEEEEccCCcccCEEEEEEEEcC
Confidence 34566 9999999999999999985
No 405
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=80.76 E-value=0.67 Score=46.68 Aligned_cols=27 Identities=11% Similarity=-0.189 Sum_probs=22.1
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
.++| |.+++.+|+|.|+|.++|.....
T Consensus 60 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 87 (317)
T 2y25_A 60 ICTLLITEFSKKDAGIYEVILKDDRGKD 87 (317)
T ss_dssp CEEEEETTCCSTTCSCEEEEEESSSCEE
T ss_pred eEEEEEccCCcccCeEEEEEEECCCCcE
Confidence 3456 88999999999999999865544
No 406
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=80.76 E-value=0.39 Score=42.85 Aligned_cols=30 Identities=3% Similarity=-0.059 Sum_probs=24.3
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
+.+| |.+++.+|+|.|.|.+.+........
T Consensus 65 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~ 95 (126)
T 3moq_A 65 SFSLRISDLRVEDSGTYKCQAFYVFFAEDVG 95 (126)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEEEEETTCGG
T ss_pred EEEEEECcCChHhCEEEEEEEEEcCCCCCce
Confidence 3455 99999999999999999987755443
No 407
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=80.74 E-value=0.63 Score=43.67 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=23.0
Q ss_pred eEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 465 ANVTGLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 465 ~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
....+ ++| |.+++..|+|.|+|.++|...
T Consensus 60 ~~~~~-~~L~i~~v~~~D~G~Y~C~~~~~~g 89 (212)
T 1f97_A 60 VTFSS-SGITFSSVTRKDNGEYTCMVSEEGG 89 (212)
T ss_dssp EEEET-TEEEESCCCGGGCEEEEEEEEETTS
T ss_pred EEeec-eeEEEcccCcccCeEEEEEEEccCC
Confidence 34444 666 899999999999999999643
No 408
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=80.72 E-value=2.6 Score=43.77 Aligned_cols=29 Identities=10% Similarity=-0.240 Sum_probs=23.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV 499 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~ 499 (694)
++| |.+++..|+|.|+|.|+|..+.....
T Consensus 158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 187 (389)
T 2jll_A 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQE 187 (389)
T ss_dssp EEEEECCCSTTSSEEEEEEEEETTEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEEcCCCcEEEE
Confidence 345 88999999999999999987765443
No 409
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=80.68 E-value=0.84 Score=42.18 Aligned_cols=31 Identities=10% Similarity=-0.114 Sum_probs=23.2
Q ss_pred eEEeccc-EE-EEEEEecCCCcceeEEEEEeee
Q psy8879 465 ANVTGLG-TV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 465 ~n~~~~g-tL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
..+..++ +| |.+++..|+|.|+|.+.|....
T Consensus 55 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 87 (192)
T 2iep_A 55 YSIRENGQLLTILSVEDSDDGIYCCTANNGVGG 87 (192)
T ss_dssp EEEEGGGTEEEESSCCGGGCEEEEEEEECSSSC
T ss_pred EEEcCCccEEEEcCCCcccCeEEEEEEEcCCCc
Confidence 3344444 45 8999999999999999986543
No 410
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=80.59 E-value=0.59 Score=40.33 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=18.3
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|.|.+.+
T Consensus 77 ~L~I~~~~~~DsG~Y~C~~~~ 97 (116)
T 1tvd_A 77 HLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp EEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEccCChHHCEEEEEEEeC
Confidence 55 999999999999999987
No 411
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=80.46 E-value=1.1 Score=42.38 Aligned_cols=26 Identities=15% Similarity=-0.046 Sum_probs=21.8
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
++++| |.+|+.+|+|.|+|.+.|...
T Consensus 68 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 94 (213)
T 3mj8_L 68 NMATLTISKAQAGDEADYYCQSWDGTN 94 (213)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTT
T ss_pred CEEEEEECCCChhhCEEEEEEeccCCc
Confidence 34556 999999999999999999653
No 412
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=80.32 E-value=0.49 Score=45.84 Aligned_cols=22 Identities=14% Similarity=-0.158 Sum_probs=19.9
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++| |.+|+.+|+|.|+|.|+|.
T Consensus 199 ~~L~I~~v~~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 199 LSLHIADSQPGDSATYFCAAIDT 221 (238)
T ss_dssp EEEEETTCCGGGCEEEEEEEEET
T ss_pred EEEEEcCCCHHHCEEEEEEEeeC
Confidence 456 9999999999999999996
No 413
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=80.29 E-value=0.77 Score=47.25 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=20.9
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
+++| |.+++.+|+|.|+|.++|..+
T Consensus 78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~ 103 (349)
T 4dep_C 78 KDVLWFRPTLLNDTGNYTCMLRNTTY 103 (349)
T ss_dssp TTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred CCEEEEccCChhhCEEEEEEEecCCc
Confidence 4556 999999999999999988543
No 414
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=80.28 E-value=0.52 Score=47.32 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=19.5
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.++|.
T Consensus 214 ~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 214 YLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEECSCCGGGCEEEEEEEECS
T ss_pred EEEECCCChhHCEEEEEEEEcC
Confidence 56 9999999999999999996
No 415
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=80.22 E-value=0.41 Score=41.91 Aligned_cols=21 Identities=10% Similarity=-0.133 Sum_probs=18.7
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
.+| |.+|+.+|+|.|.|.+.|
T Consensus 73 ~~L~I~~v~~~DsG~Y~C~~~~ 94 (119)
T 2e27_L 73 YSFSISNLEPEDAATYYCLQYD 94 (119)
T ss_dssp EEEEECSCCGGGCEEEEEEECG
T ss_pred EEEEECCCChHHCEEEEEEEcc
Confidence 356 999999999999999986
No 416
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=80.21 E-value=0.8 Score=45.52 Aligned_cols=24 Identities=8% Similarity=-0.197 Sum_probs=20.5
Q ss_pred EE-EEEEEecCCCcceeEEEEEeee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
+| |.+++..|+|.|+|.++|..+.
T Consensus 61 ~L~i~~~~~~D~G~Y~C~~~n~~g~ 85 (291)
T 2wim_A 61 RLTIYNANIEDAGIYRCQATDAKGQ 85 (291)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSSC
T ss_pred EEEEccCCcccCEEEEEEEecccCc
Confidence 55 9999999999999999986543
No 417
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}
Probab=80.08 E-value=0.77 Score=41.32 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=23.6
Q ss_pred EE-EEEEEecCCCcceeEEEEE---eeeccceeEEee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT---LYIDGDVIVQKN 504 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~---~~~~~~~~~~~~ 504 (694)
+| |.+++.+|+|.|.|.+.+. .|..|..+....
T Consensus 77 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~ 113 (137)
T 3bdb_A 77 DLNIIGAREDDGGEYFCGEVEGIIIKFTSGTRLQFEG 113 (137)
T ss_dssp EEEEESCCSTTCEEEEEEEECSSCEEEEEEEEECCCC
T ss_pred EEEECCCCHHHCEEEEEEEccCCeEEECCCEEEEEEC
Confidence 56 9999999999999999863 344444444333
No 418
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=80.07 E-value=1.3 Score=43.72 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=20.4
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+++| |.+|+.+|+|.|+|.+.|..
T Consensus 75 ~~sL~I~~v~~~DsG~Y~C~~~~~~ 99 (256)
T 3tf7_C 75 SFHLRKASVHRSDSAVYFCAVSAKG 99 (256)
T ss_dssp EEEEEESSCCGGGCSEEEEEEECTT
T ss_pred EEEEEECCCCcccCEEEEEEEecCC
Confidence 3456 99999999999999999853
No 419
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=79.89 E-value=0.29 Score=45.74 Aligned_cols=26 Identities=4% Similarity=-0.229 Sum_probs=22.2
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
.+|+| |.+|+..|+|.|+|.+.|..+
T Consensus 58 ~~~sL~I~~v~~~DsG~Y~C~~~n~~~ 84 (171)
T 1ccz_A 58 VSGSLTIYNLTSSDEDEYEMESPNITD 84 (171)
T ss_dssp TTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred CCCeEEECCCChhhCceEEEEEeCCCC
Confidence 56777 999999999999999987644
No 420
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=79.78 E-value=0.54 Score=44.62 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=21.9
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
++| |.+++.+|.|.|+|.|+|.....
T Consensus 177 s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 177 STLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred EEEEEeccccCCCCEEEEEEEEccCCC
Confidence 356 89999999999999999976654
No 421
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=79.68 E-value=0.34 Score=41.58 Aligned_cols=22 Identities=18% Similarity=-0.165 Sum_probs=19.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+++.+|+|.|.|.+.+.
T Consensus 75 ~~L~I~~v~~~DsG~Y~C~~~~~ 97 (111)
T 1j05_L 75 FTLIIDPVEADDVATYYCQQTNE 97 (111)
T ss_dssp EEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEECCCCcccCEEEEEEEecC
Confidence 356 9999999999999999863
No 422
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=79.59 E-value=0.41 Score=41.12 Aligned_cols=21 Identities=24% Similarity=-0.118 Sum_probs=18.6
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
.+| |.+|+.+|+|.|.|.+.+
T Consensus 74 ~~L~I~~v~~~DsG~Y~C~~~~ 95 (111)
T 1i3g_L 74 FTLTISNVQSEDLADYFCQQYS 95 (111)
T ss_dssp EEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEECCCCHHHCEEEEEEEec
Confidence 355 999999999999999976
No 423
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=79.58 E-value=1.3 Score=49.30 Aligned_cols=58 Identities=9% Similarity=-0.029 Sum_probs=35.1
Q ss_pred ceeeeeceeE--------EEEeccCccccccceeEeeee----EEecccEE-EEEEEecCCCcceeEEEEE
Q psy8879 435 QSALVLGCSE--------ILALVPTLTSQPLSYVTSLRA----NVTGLGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 435 ~~~~~l~c~~--------i~~l~~~~~~~~~~~i~~~~~----n~~~~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+....|.|.+ +.|................+. .....++| |.+|+.+|+|.|+|.|+|.
T Consensus 242 G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~ 312 (527)
T 3qs9_E 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312 (527)
T ss_dssp TSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred CCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence 3445667765 466666554442222111111 12234556 9999999999999999886
No 424
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=79.46 E-value=0.98 Score=43.11 Aligned_cols=24 Identities=8% Similarity=-0.126 Sum_probs=20.8
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+++| |.+|+.+|+|.|+|.+.|..
T Consensus 78 ~~~L~I~~v~~~D~G~Y~C~~~~~~ 102 (219)
T 1c1e_H 78 TAYLQINNLKNEDMATYFCARGTTI 102 (219)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEECCCCcccCEEEEEEEeccC
Confidence 3567 99999999999999999853
No 425
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=79.39 E-value=2 Score=42.89 Aligned_cols=33 Identities=9% Similarity=-0.175 Sum_probs=25.6
Q ss_pred cEE-EEE-EEecCCCcceeEEEEEeeeccceeEEe
Q psy8879 471 GTV-QVY-VQLWTNYDPNCLLTITLYIDGDVIVQK 503 (694)
Q Consensus 471 gtL-~~~-v~~~d~G~YtC~~~n~~~~~~~~~~~~ 503 (694)
++| +.+ ++..|+|.|+|.|+|..+.....+...
T Consensus 160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 194 (305)
T 2nzi_A 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194 (305)
T ss_dssp EEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEEEecCCccCccEEEEEEEEeCCCceeeEEEEE
Confidence 445 777 999999999999999887766554433
No 426
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=79.32 E-value=0.62 Score=45.81 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=19.0
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.|+|.
T Consensus 214 ~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 214 YLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp EEEECSCCGGGCEEEEEEEEET
T ss_pred EEEECCCChhhCEEEEEEEEcC
Confidence 46 9999999999999999984
No 427
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*
Probab=79.21 E-value=0.75 Score=39.74 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=18.2
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|.|.+.+
T Consensus 75 ~L~I~~~~~~DsG~Y~C~~~~ 95 (116)
T 1fo0_A 75 GLIITATQIEDSAVYFCAMRG 95 (116)
T ss_dssp EEEECSCCGGGCEEEEEEEEC
T ss_pred EEEECCCChhhCEEEEEEEEc
Confidence 45 999999999999999986
No 428
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=79.16 E-value=0.6 Score=45.74 Aligned_cols=29 Identities=10% Similarity=-0.092 Sum_probs=23.4
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
+.+.| |.+|+.+|+|.|.|+++|.....+
T Consensus 57 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 86 (210)
T 1gsm_A 57 GRSVLTVRNASLSAAGTRVCVGSCGGRTFQ 86 (210)
T ss_dssp SEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred CccEEEECccCcccCceEEEEEEeCCCceE
Confidence 34455 999999999999999999775543
No 429
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=79.06 E-value=0.66 Score=42.79 Aligned_cols=26 Identities=4% Similarity=-0.013 Sum_probs=21.0
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
+.++| |.+++.+|+|.|+|.++|...
T Consensus 52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~ 78 (175)
T 1fnl_A 52 QASSYFIDAATVNDSGEYRCQTNLSTL 78 (175)
T ss_dssp SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred CceEEEEeCCCcccCEEEEEEeeCCcc
Confidence 34566 889999999999999987433
No 430
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=79.04 E-value=0.81 Score=43.36 Aligned_cols=23 Identities=13% Similarity=-0.253 Sum_probs=20.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEEe
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.+| |.+|+.+|+|.|+|.+.|..
T Consensus 70 ~~L~I~~v~~~D~G~Y~C~~~~~~ 93 (210)
T 1lk3_L 70 FTLTIDPVEADDTAIYFCQQSWNG 93 (210)
T ss_dssp EEEEESSCCGGGCEEEEEEECSSS
T ss_pred EEEEECCCCHHHCeEEEEEEEcCC
Confidence 366 99999999999999999854
No 431
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}
Probab=78.96 E-value=0.58 Score=40.66 Aligned_cols=33 Identities=9% Similarity=-0.084 Sum_probs=25.3
Q ss_pred EeeeeEEec-ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 461 TSLRANVTG-LGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 461 ~~~~~n~~~-~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
..-|+++.+ +++| |.+++.+|+|.|+|.+...-
T Consensus 61 f~~Rl~l~~~~~SL~I~nl~~~DsG~Y~c~i~~~~ 95 (111)
T 2pkd_A 61 YYERIHALGPNYNLVISDLRMEDAGDYKADINTQA 95 (111)
T ss_dssp GTTCEEECTTTCCEEECSCCGGGCEEEEEEEEESS
T ss_pred cCCcEEEeCCCEEEEECCCCHHHCEEEEEEEEeCC
Confidence 345556653 6778 99999999999999986543
No 432
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=78.95 E-value=0.74 Score=44.66 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=19.3
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.++|.
T Consensus 65 ~L~I~~v~~~D~G~Y~C~a~n~ 86 (218)
T 1uct_A 65 EFVIDHMDANKAGRYQCQYRIG 86 (218)
T ss_dssp EEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEcccccccCEEEEEEEEcC
Confidence 56 8999999999999999995
No 433
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=78.83 E-value=0.72 Score=43.80 Aligned_cols=25 Identities=12% Similarity=-0.183 Sum_probs=21.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
+++| |.+|+.+|+|.|+|.+.|...
T Consensus 74 ~~~L~I~~v~~~D~G~Y~C~~~~~~~ 99 (218)
T 3s96_B 74 DRYLSISNIQPEDEAIYICGVGDTIK 99 (218)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEEEET
T ss_pred eEEEEEccCCcccCEEEEEEEecCCC
Confidence 4456 999999999999999999763
No 434
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=78.79 E-value=1.6 Score=42.48 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=19.3
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+|+.+|+|.|+|.+.+.
T Consensus 77 ~~L~I~~v~~~D~G~Y~C~~~~~ 99 (246)
T 4dzb_B 77 STLTVTSAHPEDSSFYICSARTS 99 (246)
T ss_dssp EEEEECSCCGGGCEEEEEEECCS
T ss_pred EEEEECCCCHHHCEEEEEEEecC
Confidence 356 9999999999999999864
No 435
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=78.77 E-value=0.39 Score=40.89 Aligned_cols=20 Identities=15% Similarity=-0.042 Sum_probs=18.3
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+|+.+|+|.|.|.+.+
T Consensus 72 ~L~I~~v~~~DsG~Y~C~~~~ 92 (107)
T 1i8k_A 72 VFTIENTLSEDVGDYYCLQSF 92 (107)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred EEEECCCCHHHCEEEEEEEee
Confidence 55 999999999999999986
No 436
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=78.77 E-value=1 Score=48.32 Aligned_cols=30 Identities=13% Similarity=-0.166 Sum_probs=23.7
Q ss_pred cEEEEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 471 GTVQVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 471 gtL~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
|.++ .|+..|+|.|+|.|+|..+.....+.
T Consensus 415 g~~~-~v~~~d~G~Y~C~a~N~~G~~~~~~~ 444 (450)
T 1z7z_I 415 GESV-TVTRDLEGTYLCRARSTQGEVTREVT 444 (450)
T ss_dssp TSCE-ECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CCeE-eEehhhCeEEEEEEEeCCCceeEEEE
Confidence 4444 78899999999999999887765543
No 437
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=78.75 E-value=1.2 Score=44.06 Aligned_cols=52 Identities=8% Similarity=-0.059 Sum_probs=34.0
Q ss_pred eeeeeceeE--------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEE
Q psy8879 436 SALVLGCSE--------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 436 ~~~~l~c~~--------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
....+.|.. +.|...++..... ..+..+..+++| |.+++..|+|.|+|.++|
T Consensus 105 ~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~ 165 (289)
T 3ejj_X 105 QEAVLPCLITDPALKDSVSLMREGGRQVLR----KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV 165 (289)
T ss_dssp SCEEECEEESCGGGGGSEEEEEGGGEECCT----TCCEEEETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred CceEeEEEccCCCcceEEEEEecCCeecCC----CccEEECCCCCEEEeecccccCEEEEEEEEe
Confidence 345566654 5665544443311 223455566677 999999999999999994
No 438
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=78.65 E-value=0.75 Score=53.70 Aligned_cols=36 Identities=11% Similarity=-0.085 Sum_probs=30.5
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN 504 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~ 504 (694)
.+|+| |.+|+.+|+|.|+|+|+|.++.+...+....
T Consensus 771 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~ 807 (816)
T 3dmk_A 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807 (816)
T ss_dssp ETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEE
T ss_pred cCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEE
Confidence 45667 9999999999999999999999887776543
No 439
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=78.58 E-value=0.83 Score=43.91 Aligned_cols=25 Identities=16% Similarity=-0.162 Sum_probs=20.7
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
++++| |.+|+.+|+|.|+|.+.|..
T Consensus 92 ~~~~L~I~~v~~~D~G~Y~C~~~~~~ 117 (237)
T 3sob_L 92 TDFTLTISSLQPEDFATYYCQQSYTT 117 (237)
T ss_dssp TEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred CEEEEEECCCChhhCeEEEEeeccCC
Confidence 34556 99999999999999997743
No 440
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=78.50 E-value=0.42 Score=40.96 Aligned_cols=21 Identities=19% Similarity=-0.039 Sum_probs=18.9
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+++.+|+|.|.|.+.+.
T Consensus 75 sL~I~~~~~~DsG~Y~C~v~~~ 96 (113)
T 1zox_A 75 TVTMEDLRMSDAGIYWCGITKG 96 (113)
T ss_dssp EEEECSCCGGGCEEEEEEECCS
T ss_pred EEEEccCCHHHCEEEEEeeEcC
Confidence 45 9999999999999999875
No 441
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=78.44 E-value=0.86 Score=44.49 Aligned_cols=22 Identities=5% Similarity=-0.132 Sum_probs=19.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++| |.+|+.+|+|.|+|.++|.
T Consensus 206 ~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 206 AFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEECCCChhHCEEEEEEEecc
Confidence 466 9999999999999999993
No 442
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=78.40 E-value=0.52 Score=43.71 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=19.9
Q ss_pred E-EEEEEecCCCcceeEEEEEee
Q psy8879 473 V-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 473 L-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
| |.+++.+|+|.|+|.+.|...
T Consensus 70 L~i~~v~~~D~G~Y~C~~~~~~~ 92 (184)
T 2ny1_B 70 LIIKNLKIEDSDTYICEVEDQKE 92 (184)
T ss_dssp EEECSCCGGGCEEEEEEETTEEE
T ss_pred EEEecCCHHHCEEEEEEEEcCCC
Confidence 5 999999999999999998754
No 443
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=78.32 E-value=1.4 Score=41.53 Aligned_cols=30 Identities=7% Similarity=-0.150 Sum_probs=23.0
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
++| |..++..|.|.|+|.|+|.......-+
T Consensus 177 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 177 SYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207 (213)
T ss_dssp EEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred EEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence 345 888888999999999999875544433
No 444
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=78.17 E-value=0.91 Score=47.51 Aligned_cols=29 Identities=10% Similarity=-0.105 Sum_probs=23.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
.++| |.+++..|+|.|+|.|+|..+....
T Consensus 274 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 303 (404)
T 3p3y_A 274 NKALRITNVSEEDSGEYFCLASNKMGSIRH 303 (404)
T ss_dssp GTEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred CceEEEccCCHhHCEEEEEEEEeCCCcEEE
Confidence 4566 8999999999999999997765443
No 445
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=78.14 E-value=0.57 Score=46.09 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=19.9
Q ss_pred EEEEEecCCCcceeEEEEEeeec
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
|..++.+|+|.|+|.|+|.....
T Consensus 219 i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 219 LTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EEHHHHHHCCEEEEEEECTTCSS
T ss_pred EcchhccCCCeEEEEEEeCCCCC
Confidence 88888899999999999976654
No 446
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=78.08 E-value=0.7 Score=43.23 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=22.3
Q ss_pred eEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 465 ANVTGLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 465 ~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
+.+.+ ++| |.+++..|+|.|+|.+.|..
T Consensus 63 ~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~ 91 (209)
T 1nbq_A 63 VTFLP-TGITFKSVTREDTGTYTCMVSEEG 91 (209)
T ss_dssp CEEET-TEEECSCCCTTSCSEEEEEEEETT
T ss_pred eEeec-cEEEEeeCCHHHCcEEEEEEecCC
Confidence 34444 556 88999999999999999863
No 447
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=77.98 E-value=1.7 Score=37.27 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=18.4
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|.|.+.+
T Consensus 75 ~L~I~~~~~~Dsg~Y~C~~~~ 95 (112)
T 1fo0_B 75 ELRLQVANMSQGRTLYCTCSA 95 (112)
T ss_dssp EEEEEEESCCSCEEEEEEEES
T ss_pred eEEEcCCCHhHCEEEEEEEEc
Confidence 67 999999999999999975
No 448
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=77.94 E-value=0.36 Score=47.37 Aligned_cols=32 Identities=9% Similarity=-0.131 Sum_probs=24.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEE-eeeccceeEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT-LYIDGDVIVQ 502 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~-~~~~~~~~~~ 502 (694)
++| |.+|+.+|+|.|+|.|+|. .|-.|..+..
T Consensus 200 ~~L~I~~v~~~D~G~Y~C~a~~~~~fG~gt~l~v 233 (242)
T 2znx_A 200 YYLDLNSVTTEDTATYYCANXDGDYXGQGTLVTV 233 (242)
T ss_dssp EEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEE
T ss_pred EEEEECCCCcCcCEEEEEeccCCcccCCCeEEEE
Confidence 366 9999999999999999883 5655555543
No 449
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=77.77 E-value=0.51 Score=40.77 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=18.8
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
.+| |.+++.+|+|.|.|.+.+
T Consensus 66 ~~L~I~~~~~~DsG~Y~C~~~~ 87 (113)
T 1sq2_N 66 FSLRINDLTVEDGGTYRCGLGV 87 (113)
T ss_dssp EEEEECSCCGGGCEEEEEEECB
T ss_pred EEEEECCCChhhCEEEEEEEEe
Confidence 456 999999999999999987
No 450
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=77.73 E-value=0.54 Score=40.74 Aligned_cols=22 Identities=9% Similarity=-0.144 Sum_probs=19.4
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+|+.+|+|.|.|.+.+.
T Consensus 78 ~~L~I~~v~~~DsG~Y~C~~~~~ 100 (120)
T 2yz1_A 78 FSIRISNVTPEDAGTYYCVKFQK 100 (120)
T ss_dssp CCEEECSCCGGGCEEEEEEEEEC
T ss_pred EEEEECCCCHHHCEEEEEEEEcC
Confidence 456 9999999999999999874
No 451
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=77.69 E-value=1.4 Score=44.98 Aligned_cols=23 Identities=4% Similarity=-0.132 Sum_probs=13.8
Q ss_pred EEEEEecCCCcceeEEEEEeeec
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
|..++..|+|.|+|.|+|..+..
T Consensus 287 i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 287 VNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp C-------CCEEEEEEEETTCCC
T ss_pred EccccccCCCEEEEEEEeCCCCC
Confidence 67778899999999999987653
No 452
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=77.58 E-value=0.82 Score=51.16 Aligned_cols=66 Identities=6% Similarity=-0.090 Sum_probs=40.9
Q ss_pred ceeeeeceeE-------EEEeccCccccccceeEeeeeEEe-cccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879 435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVT-GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ 502 (694)
Q Consensus 435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~-~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~ 502 (694)
+-...+.|.. +.|....+.....+. +.++... +.++| |.+++..|+|.|+|.|+|..+.++.....
T Consensus 492 g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L 566 (570)
T 3b43_A 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESD--NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566 (570)
T ss_dssp TCCEEEEEEEESCSSCCCEEEETTEECCCCTT--TEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEE
T ss_pred CCeEEEEEEEecCCCCEEEEEeCCeEeccCCC--eEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEE
Confidence 3445677766 566655433321111 1111111 23466 88999999999999999999988765543
No 453
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=77.51 E-value=2.3 Score=40.66 Aligned_cols=23 Identities=17% Similarity=-0.080 Sum_probs=20.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEEe
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
.+| |.+|+.+|+|.|.|.+.+..
T Consensus 71 ~~L~I~~v~~~D~G~Y~C~~~~~~ 94 (207)
T 1ypz_E 71 STLHIRDAQLEDSGTYFCAADTWH 94 (207)
T ss_dssp EEEEECSCCGGGCEEEEEEEECBC
T ss_pred EEEEECCCCHHHCEEEEEEEecCC
Confidence 456 99999999999999998863
No 454
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=77.43 E-value=0.86 Score=44.51 Aligned_cols=20 Identities=5% Similarity=-0.213 Sum_probs=18.5
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+|+.+|+|.|+|.+++
T Consensus 211 ~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 211 YMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEECSCCGGGCEEEEEEEEC
T ss_pred EEEECCCCcccCEEEEEEEec
Confidence 45 999999999999999997
No 455
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=77.43 E-value=1.1 Score=42.30 Aligned_cols=27 Identities=7% Similarity=-0.070 Sum_probs=21.3
Q ss_pred EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
|..+...|.|.|+|.|+|.....+..+
T Consensus 183 i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 183 LTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp EEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred EcHHHccCCCcEEEEEEeCCcceeeee
Confidence 777888899999999999776644333
No 456
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=77.42 E-value=0.47 Score=54.75 Aligned_cols=61 Identities=13% Similarity=-0.010 Sum_probs=0.0
Q ss_pred ceeeeeceeE-------EEEeccCccccccceeEeeeeEE-ecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANV-TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~-~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
+....+.|.. +.|........... ++.+ .+.++| |.+|+..|+|.|+|.|+|..+.+....
T Consensus 681 g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 750 (772)
T 3v2a_R 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDS-----GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 750 (772)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCEEEEEEeCccCCCeEEEEECCeECcCCC-----CeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEE
Confidence 3445677765 45555444333222 1222 235667 999999999999999999988876543
No 457
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=77.35 E-value=1.3 Score=49.38 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=38.0
Q ss_pred cceeeeeceeE-------EEEeccCccccccceeEeeeeEEe-cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVT-GLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~-~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
++....+.|.. +.|...........+ .+.... ..+.| |.+++.+|+|.|+|.|+|..+...
T Consensus 305 ~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~ 374 (570)
T 3b43_A 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSK---FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 374 (570)
T ss_dssp SSCEEEEEEEEESSSSCEEEEEETTEECCCSSS---EEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCE
T ss_pred CCCcEEEEEEEeeCCCCEEEEeECCEECCCCCc---EEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEE
Confidence 33445677765 666665544442221 122222 23456 999999999999999999776544
No 458
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=77.35 E-value=0.85 Score=43.91 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=20.7
Q ss_pred cEE-EEEEEecCCCcceeEEEEEee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
++| |.+|+.+|+|.|+|.|+|...
T Consensus 91 ~~L~I~~v~~~D~G~Y~C~~~~~~~ 115 (234)
T 2j6e_L 91 ASLAISGLRSEDEADYYCATWDDSL 115 (234)
T ss_dssp EEEEEESCCSTTCSEEEEEEEETTT
T ss_pred EEEEECCCCHHHCEEEEEEEEcCCc
Confidence 456 999999999999999998643
No 459
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Probab=77.34 E-value=0.97 Score=39.27 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=23.8
Q ss_pred cEE-EEEEEecCCCcceeEEEE----EeeeccceeEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI----TLYIDGDVIVQ 502 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n----~~~~~~~~~~~ 502 (694)
.+| |.+|+.+|+|+|.|.+.. ..|..+..+..
T Consensus 81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~fg~GT~l~V 117 (120)
T 3noi_A 81 AELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVV 117 (120)
T ss_dssp CCEEESSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred EEEEEecCChhhCEEEEEEEEECCccceeCCCeEEEE
Confidence 355 999999999999999985 24555555443
No 460
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=77.29 E-value=2.6 Score=36.92 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=17.3
Q ss_pred EEEEEecCCCcceeEEEE
Q psy8879 474 QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n 491 (694)
|.+|..+|+|.|+|.|.+
T Consensus 83 f~~V~~sDsG~YrCsAn~ 100 (122)
T 1xau_A 83 FKPIHLSDNGSYSCSTNF 100 (122)
T ss_dssp ETTCCGGGCEEEEEEEEE
T ss_pred EeeEEEcCCccEEEEeeC
Confidence 888999999999999999
No 461
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=77.13 E-value=2.3 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.6
Q ss_pred cccEE-EEEEEecCCCcceeEEEEE
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
..++| |.+++.+|+|.|+|.++|.
T Consensus 140 ~~~~L~i~~v~~~d~G~Y~C~a~~~ 164 (363)
T 1wio_A 140 GGKTLSVSQLELQDSGTWTCTVLQN 164 (363)
T ss_dssp ESSEEEECSBCGGGCEECEEEEEET
T ss_pred cceEEEEeeCChhcCCEEEEEEecC
Confidence 45666 8999999999999999874
No 462
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=76.92 E-value=3 Score=40.88 Aligned_cols=29 Identities=7% Similarity=-0.074 Sum_probs=22.3
Q ss_pred eeEEeccc---EEEEEEEecCCCcceeEEEEE
Q psy8879 464 RANVTGLG---TVQVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 464 ~~n~~~~g---tL~~~v~~~d~G~YtC~~~n~ 492 (694)
|+.+..++ ..|.+|+.+|+|.|+|.+.+.
T Consensus 65 R~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 96 (253)
T 3to4_D 65 DYLATRVTDTELRLQVANMSQGRTLYCTSSAD 96 (253)
T ss_dssp EEEEECCSSSCCEEEEESCSSCEEEEEEEECS
T ss_pred cEEEEeCCCCeEEEccCChhhCeEEEEEEecC
Confidence 55555444 349999999999999999753
No 463
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=76.83 E-value=1 Score=44.29 Aligned_cols=20 Identities=5% Similarity=-0.195 Sum_probs=18.5
Q ss_pred E-EEEEEecCCCcceeEEEEE
Q psy8879 473 V-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 473 L-~~~v~~~d~G~YtC~~~n~ 492 (694)
| |.+|+.+|+|.|+|.+.|.
T Consensus 82 L~I~~v~~~DsG~Y~C~~~~~ 102 (253)
T 3uzq_A 82 LHLSSLTSGDTAVYYCSRGWE 102 (253)
T ss_dssp EEECSCCGGGCEEEEEEECSS
T ss_pred EEeCCCCcccCEEEEEEEeeC
Confidence 5 9999999999999999983
No 464
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=76.57 E-value=1.5 Score=41.48 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=18.9
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
.+| |.+|+.+|+|.|+|.++|
T Consensus 69 ~~L~I~~v~~~D~G~Y~C~~~n 90 (212)
T 1nfd_E 69 ATLTISGAQPEDEAAYYCLSSY 90 (212)
T ss_dssp EEEEETTCCGGGCSEEEEEEEE
T ss_pred EEEEECcCCcccCEEEEEEEEc
Confidence 356 999999999999999997
No 465
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=76.53 E-value=1.1 Score=46.83 Aligned_cols=49 Identities=10% Similarity=-0.168 Sum_probs=32.0
Q ss_pred EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCC-CcceeEEEEEe
Q psy8879 445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTN-YDPNCLLTITL 493 (694)
Q Consensus 445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~-G~YtC~~~n~~ 493 (694)
+.|................+..+..+++| |.+|+..|+ |.|+|.++|..
T Consensus 138 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~ 188 (388)
T 2v5m_A 138 VSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL 188 (388)
T ss_dssp EEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETT
T ss_pred EEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCC
Confidence 55655544332111122344555667777 899999999 99999999853
No 466
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=76.53 E-value=1.1 Score=44.93 Aligned_cols=21 Identities=19% Similarity=-0.039 Sum_probs=19.1
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.++|.
T Consensus 83 ~L~I~~v~~~DsG~Y~C~~~n~ 104 (276)
T 3auv_A 83 TLTISSLQPEDFATYYCQQHYT 104 (276)
T ss_dssp EEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEccCChhhCEEEEEEEecC
Confidence 56 9999999999999999885
No 467
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=76.52 E-value=2 Score=42.59 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=19.5
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
+.+| |.+|+.+|+|.|+|.+.+
T Consensus 100 ~~sL~I~~v~~~D~G~Y~C~~~~ 122 (270)
T 3qib_D 100 PCSLEIQSSEAGDSALYLCASSL 122 (270)
T ss_dssp CEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEEECCCCHhHCeEEEEEEec
Confidence 4566 999999999999999985
No 468
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=76.50 E-value=0.51 Score=52.79 Aligned_cols=34 Identities=15% Similarity=-0.083 Sum_probs=27.4
Q ss_pred eeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879 463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID 496 (694)
Q Consensus 463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~ 496 (694)
.|..+..+++| |.+|+.+|+|.|+|+++|..+..
T Consensus 424 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~ 458 (581)
T 3o3u_N 424 SVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKE 458 (581)
T ss_dssp GTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCE
T ss_pred CcEEEcCCceEEEeccccccCeEEEEEEEcCCCce
Confidence 34556677777 99999999999999999866544
No 469
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=76.41 E-value=0.63 Score=44.31 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=18.7
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+|+.+|+|.|+|.++|
T Consensus 81 ~L~I~~v~~~D~G~Y~C~~~~ 101 (222)
T 3sbw_C 81 ALQITDVKLQDAGVYRCMISY 101 (222)
T ss_dssp EEEESSCCGGGCEEEEEEEES
T ss_pred EEEEcCcccccCeEEEEEEEe
Confidence 56 999999999999999998
No 470
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=76.33 E-value=0.45 Score=41.71 Aligned_cols=23 Identities=4% Similarity=-0.302 Sum_probs=19.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
..+| |.+|+.+|+|.|.|.+.+.
T Consensus 70 ~~~L~I~~v~~~DsG~Y~C~~~~~ 93 (120)
T 1mqk_L 70 QFSLKINSLLPEDFGSYYCQHHYG 93 (120)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEECCCCHHHCEEEEEEEEeC
Confidence 3456 9999999999999999874
No 471
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=76.28 E-value=1 Score=38.46 Aligned_cols=20 Identities=5% Similarity=-0.213 Sum_probs=18.4
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|.|.+.+
T Consensus 77 ~L~I~~~~~~DsG~Y~C~~~~ 97 (111)
T 2qhl_A 77 DLNIIGTREDDGGEYFCGEVE 97 (111)
T ss_dssp EEEESSCCGGGCEEEEEEEEE
T ss_pred EEEECCCChhHCEEEEEEEcc
Confidence 56 999999999999999987
No 472
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=76.25 E-value=0.93 Score=42.95 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=20.4
Q ss_pred EE-EEEEEecCCCcceeEEEEEeee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
+| |..++.+|+|.|+|.|+|....
T Consensus 177 ~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 177 TLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp EEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred EEEEChHHhccCCcEEEEEEecCCC
Confidence 45 8889999999999999996553
No 473
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=76.13 E-value=1.4 Score=42.96 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=19.1
Q ss_pred cEE-EEEEEecCCCcceeEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n 491 (694)
.+| |.+|+.+|+|.|+|.+.|
T Consensus 74 ~sL~I~~v~~~D~G~Y~C~~~~ 95 (245)
T 3nfj_J 74 FILSSKKLLLSDSGFYLCAWSV 95 (245)
T ss_dssp EEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEECCCChhhCEEEEEEEee
Confidence 356 999999999999999998
No 474
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=76.07 E-value=0.96 Score=43.32 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=21.1
Q ss_pred ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
.++| |.+++..|+|.|+|.++|...
T Consensus 64 ~~~L~i~~v~~~d~G~Y~C~~~n~~~ 89 (218)
T 3k0w_A 64 TSELIFNAVHVKDAGFYVCRVNNNFT 89 (218)
T ss_dssp SSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred CCEEEEccCChhhCeEeEEEEEcCCC
Confidence 4556 889999999999999998744
No 475
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=75.99 E-value=0.84 Score=45.79 Aligned_cols=22 Identities=5% Similarity=-0.182 Sum_probs=18.8
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
++.| |.+|+.+|+|.|+|.+++
T Consensus 61 ~~~L~I~~v~~~DsG~Y~C~a~~ 83 (257)
T 1b6u_A 61 KANFSIGPMMQDLAGTYRCYGSV 83 (257)
T ss_dssp EEEEEECSCCTTTCEEEEEEEEC
T ss_pred eEEEEeecCCcccCEEEEEeEec
Confidence 3455 889999999999999975
No 476
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=75.83 E-value=0.95 Score=43.49 Aligned_cols=31 Identities=6% Similarity=-0.202 Sum_probs=22.9
Q ss_pred EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879 474 QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN 504 (694)
Q Consensus 474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~ 504 (694)
+..+...|.|.|+|.|+|..+.........+
T Consensus 204 i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~ 234 (237)
T 3sob_L 204 LSKADYEKHKVYACEVTHQGLSSPVTKSFNR 234 (237)
T ss_dssp EEHHHHTTCCEEEEEEECTTCSSCEEEEEES
T ss_pred EcHHHccCCCcEEEEEeeCCCCCceeeeeee
Confidence 6677778899999999998776554444333
No 477
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=75.74 E-value=1.2 Score=45.30 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=20.3
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+|+.+|+|.|+|.++|.
T Consensus 73 ~~~L~I~~v~~~D~G~Y~C~a~n~ 96 (327)
T 2wng_A 73 DFSISISNITPADAGTYYCVKFRK 96 (327)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEES
T ss_pred eeEEEEccCccccCeEEEEEeecC
Confidence 4456 9999999999999999986
No 478
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=75.73 E-value=0.54 Score=45.36 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=23.2
Q ss_pred EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
+| |..++.+|.|.|+|.|+|.......-++
T Consensus 200 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 200 YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp EECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred EEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 45 7788889999999999998776544443
No 479
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=75.64 E-value=0.61 Score=40.14 Aligned_cols=20 Identities=15% Similarity=-0.124 Sum_probs=18.2
Q ss_pred EE-EEEEEecCCCcceeEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n 491 (694)
+| |.+++.+|+|.|.|.+.+
T Consensus 78 ~L~I~~v~~~DsG~Y~C~~~~ 98 (114)
T 1eeq_A 78 TLTISSLQAEDVAVYYCQQYY 98 (114)
T ss_dssp EEEESSCCGGGCEEEEEEECS
T ss_pred EEEECCCCcccCEEEEEEEee
Confidence 55 999999999999999986
No 480
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=75.63 E-value=0.65 Score=43.52 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=19.7
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.++| |.+|+.+|+|.|+|.++|.
T Consensus 56 ~~~L~I~~v~~~D~G~Y~C~~~~~ 79 (188)
T 1oll_A 56 KVKFYIPDMNSRMAGQYSCIYRVG 79 (188)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEET
T ss_pred eeEEEeCcCCcccCeEEEEEecCC
Confidence 3555 8899999999999999884
No 481
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=75.63 E-value=1.7 Score=42.74 Aligned_cols=24 Identities=4% Similarity=-0.377 Sum_probs=20.5
Q ss_pred cccEE-EEEEEecCCCcceeEEEEE
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
++.+| |.+|+.+|+|.|+|.+.|.
T Consensus 77 ~~~~L~I~~v~~~DsG~Y~C~~~~~ 101 (259)
T 3omz_A 77 KNLRMILRNLIENDSGVYYCATWDQ 101 (259)
T ss_dssp CCCEEEESSCCGGGCEEEEEEEECT
T ss_pred CeEEEEECCCCcccCEEEEEEEeeC
Confidence 34456 9999999999999999985
No 482
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=75.56 E-value=1.2 Score=42.89 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=21.2
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYI 495 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~ 495 (694)
++| |.+++.+|+|.|+|.|+|..+.
T Consensus 76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~ 101 (218)
T 2rgs_A 76 STLPIQHQDWMSGKEFKCKVNNKDLP 101 (218)
T ss_dssp EEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred EEEEEcHHHcCCCCeEEEEEECCcCC
Confidence 456 8889999999999999997654
No 483
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=75.52 E-value=0.68 Score=43.60 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=21.3
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
..++| |.+|+.+|+|.|+|.++|..
T Consensus 56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 56 KKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp TTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred cccEEEECCCCHHHCeEEEEEEECCC
Confidence 34566 88999999999999999865
No 484
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=75.34 E-value=0.72 Score=45.02 Aligned_cols=22 Identities=5% Similarity=-0.204 Sum_probs=19.9
Q ss_pred cEE-EEEEEecCCCcceeEEEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
.+| |.+|+.+|+|.|+|.++|.
T Consensus 81 ~~L~I~~v~~~D~G~Y~C~~~n~ 103 (247)
T 2ghw_B 81 LYLQMNSLRAEDTAVYYCARDRS 103 (247)
T ss_dssp EEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEECcCCHHHCEEEEEeeecc
Confidence 356 9999999999999999996
No 485
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=75.32 E-value=1.8 Score=41.71 Aligned_cols=23 Identities=9% Similarity=-0.190 Sum_probs=20.6
Q ss_pred cEE-EEEEEecCCCcceeEEEEEe
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
++| |.+|+.+|+|.|+|.+.|..
T Consensus 80 ~~L~I~~v~~~D~G~Y~C~~~~~~ 103 (228)
T 3bae_H 80 VFMKITSVDTADTATYYCARRGFY 103 (228)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEES
T ss_pred EEEEEcCCCcccCEEEEEEEecCC
Confidence 566 99999999999999999864
No 486
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=75.16 E-value=0.96 Score=43.23 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=23.1
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI 500 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~ 500 (694)
++| +..+...|.|.|+|.|+|..+.....+
T Consensus 176 s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~ 206 (221)
T 3eow_R 176 SLWILVPSSQVDGKQVTCKVEHESFEKPQLL 206 (221)
T ss_dssp EEEECCCCSCCCCCCEEEEECCSCSSSCEEE
T ss_pred EEEEEeCCHHHCCCeEEEEEECCCCCCCeEE
Confidence 345 778889999999999999876654433
No 487
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=74.91 E-value=0.52 Score=41.40 Aligned_cols=31 Identities=6% Similarity=-0.101 Sum_probs=23.4
Q ss_pred cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV 501 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~ 501 (694)
.+| |.+++.+|+|+|.|.+....|-.|..+.
T Consensus 81 ~sL~I~~v~~~DsG~Y~C~~~~~~fg~Gt~l~ 112 (121)
T 2xt1_B 81 LYLQMNDLKPEDTAMYYCKASGSSWGQGTQVT 112 (121)
T ss_dssp EEEEECSCCGGGCEEEEEEETTCCCCCCEEEE
T ss_pred EEEEECCCCHHHCEEEEEEEEeCEECCCEEEE
Confidence 355 9999999999999999744455555443
No 488
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=74.71 E-value=1.3 Score=37.91 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=17.8
Q ss_pred cEE-EEEEEecCCCcceeEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLT 490 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~ 490 (694)
.+| |.+++.+|+|.|.|.+.
T Consensus 72 ~~L~I~~~~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 72 FHLQKASVQESDSAVYYCALS 92 (112)
T ss_dssp CCEEESSCCSTTCSEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEE
Confidence 345 89999999999999997
No 489
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=74.63 E-value=1.6 Score=42.32 Aligned_cols=23 Identities=4% Similarity=-0.152 Sum_probs=20.2
Q ss_pred ccEE-EEEEEecCCCcceeEEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+.+| |.+|+.+|+|.|+|.+.+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~~~~~ 101 (227)
T 1mju_H 78 TAYMQLSSLTSDDSAVYYCANKLG 101 (227)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEET
T ss_pred eEEEEECCCCcccCEEEEEEECCC
Confidence 3466 9999999999999999984
No 490
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.56 E-value=4.9 Score=34.20 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecC
Q psy8879 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201 (694)
Q Consensus 154 ~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~ 201 (694)
.++.|...+|.++ .+|+.+.|-.+ ++.|...+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444555555555 55555555432 4555555555556666555544
No 491
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=74.52 E-value=2.3 Score=41.69 Aligned_cols=21 Identities=5% Similarity=-0.216 Sum_probs=19.2
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+|+.+|+|.|+|.+.|.
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~ 107 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGE 107 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCC
T ss_pred EEEECCCCcccCEEEEEeEEec
Confidence 45 9999999999999999986
No 492
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=74.51 E-value=0.55 Score=45.89 Aligned_cols=29 Identities=3% Similarity=-0.403 Sum_probs=23.9
Q ss_pred cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879 469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG 497 (694)
Q Consensus 469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~ 497 (694)
..++| |.+++..|+|.|+|.|+|..+...
T Consensus 221 ~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~ 250 (262)
T 3rjd_A 221 TSSEYQILTARREDSGLYWCEAATEDGNVL 250 (262)
T ss_dssp SCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred CCceEEEEEechhhCeEEEEEEEcccCceE
Confidence 33456 889999999999999999888653
No 493
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=74.50 E-value=0.7 Score=39.68 Aligned_cols=21 Identities=14% Similarity=-0.132 Sum_probs=18.6
Q ss_pred EE-EEEEEecCCCcceeEEEEE
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTIT 492 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~ 492 (694)
+| |.+++.+|+|.|.|.+.+.
T Consensus 77 ~L~I~~v~~~DsG~Y~C~~~~~ 98 (113)
T 1dlf_L 77 TLKISRVEAEDLGVYFCSQSTH 98 (113)
T ss_dssp EEEECSCCGGGCEEEEEEECSS
T ss_pred EEEECCCChHHCEEEEEEEecC
Confidence 55 9999999999999999763
No 494
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=74.46 E-value=1.2 Score=45.28 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=12.8
Q ss_pred cEE-EEEEEecCCCcceeEEEEEe
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLTITL 493 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~n~~ 493 (694)
++| |.+|+ |+|.|+|.++|..
T Consensus 274 ~~L~i~~v~--D~G~Y~C~a~n~~ 295 (316)
T 3vh8_G 274 ADFPLGPAT--HGGTYRCFGSFRH 295 (316)
T ss_dssp EEEECC-------CEEEEEEEBTT
T ss_pred EEEEcCCcC--CCEEEEEEeecCC
Confidence 455 77888 9999999999954
No 495
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=74.38 E-value=1.5 Score=48.07 Aligned_cols=31 Identities=10% Similarity=-0.115 Sum_probs=24.3
Q ss_pred ecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879 468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD 498 (694)
Q Consensus 468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~ 498 (694)
...++| |.+++.+|+|.|+|.|+|..+....
T Consensus 270 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 301 (524)
T 2ec8_A 270 ERQATLTISSARVNDSGVFMCYANNTFGSANV 301 (524)
T ss_dssp EEEEEEEESSCCTTTCEEEEEEEECSSCEEEE
T ss_pred ceEEEEEECCCCHHHCEEEEEEEEecCCceEE
Confidence 344666 8999999999999999986655443
No 496
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=74.37 E-value=1.4 Score=38.78 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=19.1
Q ss_pred ccEE-EEEEEecCCCcceeEEEE
Q psy8879 470 LGTV-QVYVQLWTNYDPNCLLTI 491 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G~YtC~~~n 491 (694)
+.+| |.+++.+|+|+|.|.+.+
T Consensus 71 ~~sL~I~~l~~~DsG~Y~C~~~~ 93 (123)
T 3t0v_A 71 SASLAISGLRSEDEADYYCLSWD 93 (123)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECCCCHHHCEEEEEEEEc
Confidence 3455 999999999999999986
No 497
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1
Probab=74.37 E-value=0.42 Score=41.31 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=19.6
Q ss_pred EE-EEEEEecCCCcceeEEEEEee
Q psy8879 472 TV-QVYVQLWTNYDPNCLLTITLY 494 (694)
Q Consensus 472 tL-~~~v~~~d~G~YtC~~~n~~~ 494 (694)
+| |.+++.+|+|.|.|.+.+...
T Consensus 77 ~L~I~~~~~~Dsg~Y~C~~~~~~~ 100 (114)
T 1u9k_A 77 QVQMTDLQVTDSGLYRCVIYHPPN 100 (114)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTS
T ss_pred EEEECCCChHHCEEEEEEEecCCC
Confidence 45 999999999999999987543
No 498
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=74.35 E-value=2.1 Score=43.84 Aligned_cols=30 Identities=10% Similarity=-0.244 Sum_probs=25.0
Q ss_pred ccEE-EEEEEecCCC-cceeEEEEEeeeccce
Q psy8879 470 LGTV-QVYVQLWTNY-DPNCLLTITLYIDGDV 499 (694)
Q Consensus 470 ~gtL-~~~v~~~d~G-~YtC~~~n~~~~~~~~ 499 (694)
.++| |.+|+..|+| .|+|.|+|..+.....
T Consensus 292 ~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~ 323 (329)
T 3oq3_B 292 EATLYFENVTEEYIGNTYTCRGHNYYFDKTLT 323 (329)
T ss_dssp EEEEEESSCCGGGTTCEEEEEEECSSCEEEEE
T ss_pred EeEEEEEeccHHHCCCcEEEEEEecCCceEEE
Confidence 4556 8999999999 9999999988776544
No 499
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=74.30 E-value=1.4 Score=44.40 Aligned_cols=60 Identities=10% Similarity=-0.100 Sum_probs=0.0
Q ss_pred cccceeeeece---------eEEEEeccCccccccceeEee--------------eeEEeccc-----EE-EEEEEecCC
Q psy8879 432 ILDQSALVLGC---------SEILALVPTLTSQPLSYVTSL--------------RANVTGLG-----TV-QVYVQLWTN 482 (694)
Q Consensus 432 ~~~~~~~~l~c---------~~i~~l~~~~~~~~~~~i~~~--------------~~n~~~~g-----tL-~~~v~~~d~ 482 (694)
..++..+.|.| ..+.|............+... |+.+..++ +| |.+|+.+|+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 91 (280)
T 3fku_X 12 KKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDT 91 (280)
T ss_dssp ECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTC
T ss_pred ECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhC
Q ss_pred CcceeEEEE
Q psy8879 483 YDPNCLLTI 491 (694)
Q Consensus 483 G~YtC~~~n 491 (694)
|.|+|.+.|
T Consensus 92 G~Y~C~~~~ 100 (280)
T 3fku_X 92 AVYYCARSP 100 (280)
T ss_dssp EECCEEECS
T ss_pred EEEEEEEec
No 500
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=74.22 E-value=2.2 Score=41.10 Aligned_cols=20 Identities=5% Similarity=-0.180 Sum_probs=18.1
Q ss_pred cEE-EEEEEecCCCcceeEEE
Q psy8879 471 GTV-QVYVQLWTNYDPNCLLT 490 (694)
Q Consensus 471 gtL-~~~v~~~d~G~YtC~~~ 490 (694)
++| |.+|+.+|+|.|+|.|+
T Consensus 198 ~~L~I~~v~~~D~G~Y~C~a~ 218 (240)
T 1moe_A 198 AYLQLTSLTSEDTAVYYCAPF 218 (240)
T ss_dssp EEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEECcCCHHHCEEEEEEEE
Confidence 356 99999999999999998
Done!