RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8879
(694 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 73.0 bits (179), Expect = 3e-13
Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 30/251 (11%)
Query: 125 ISSGELKNISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKL 183
+S+ +L SS L+ L L NN + +P ++ PNL+ LDLS+N L
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI----PNLETLDLSNNMLSGE 155
Query: 184 ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVT 243
SSL LDL N L+ + L L +L L L N+L + L ++S+
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215
Query: 244 DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
+ L +N L+G + P + L+SL L + +N + I
Sbjct: 216 WIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTG--------------------PIPS 254
Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 363
S L L +L L N++ S+ L L +LDLS N L +L+ L++L
Sbjct: 255 ----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310
Query: 364 QELRLDDNDIS 374
+ L L N+ +
Sbjct: 311 EILHLFSNNFT 321
Score = 68.7 bits (168), Expect = 7e-12
Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 2/240 (0%)
Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF 196
+ + L+ L L +N L L + +L + L +N L GL+SLN
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNH 240
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256
LDL YN L L L L+ L L N+L+ + ++ L+ + LDLS N L+G +
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
P V +L +L++L + N F+ AL L +L L N+ + + L+
Sbjct: 301 -PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
LDL+ N + L NL L L N L + +SL+ +RL DN S E
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419
Score = 68.0 bits (166), Expect = 1e-11
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 4/198 (2%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N+L +P S A +L R+ L N + F L + FLD+S N L
Sbjct: 390 NSLEGEIPKSLGA--CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
+ +L++L L N+ + G + + +LDLS N +G + P + LS L L
Sbjct: 448 KWDMPSLQMLSLARNKFF-GGLPDSFGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLK 505
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
++ N+ S L+ KL SL HNQ+ SF + LS LDL+ N++
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565
Query: 332 SLAHLSNLTTLDLSHNFL 349
+L ++ +L +++SHN L
Sbjct: 566 NLGNVESLVQVNISHNHL 583
Score = 66.8 bits (163), Expect = 3e-11
Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 8/211 (3%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
NL LDLS N L +L L L N L L +LR +RLQ N
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL--- 285
+ + + L V LD+S+N L G + S + SL++LS+A N+F G L
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRIN-SRKWDMPSLQMLSLARNKFF----GGLPDS 471
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
G +L +L NQ +LS L L L+ N++ L+ L +LDLS
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531
Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISME 376
HN L + + L +L L N +S E
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562
Score = 62.9 bits (153), Expect = 5e-10
Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 18/220 (8%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPD--------ERVSLLDCTLSNVTVLPGKFLEGVT 119
+P L + N L S SL G P RV L D + S LP +F +
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE--LPSEFTKLPL 429
Query: 120 LHGLVISSGELK-NISDGAFIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSH 177
++ L IS+ L+ I+ + S LQ L L N +P S + L+ LDLS
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPS--LQMLSLARNKFFGGLPDSFGSK---RLENLDLSR 484
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
NQ LS L L LS NKL D L+ L L L N+L+ + A+
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
+ ++ LDLS N L+G + P + + SL ++I+HN
Sbjct: 545 EMPVLSQLDLSQNQLSGEI-PKNLGNVESLVQVNISHNHL 583
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 56.0 bits (136), Expect = 3e-10
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
NL LDLS+N+L + + +FKGL +L LDLS N L ++S + + L +LR L L GN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 52.2 bits (126), Expect = 7e-09
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
+LK L +++N+ + + GA GL L L N + + +F L +L LDL+ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 51.8 bits (125), Expect = 8e-09
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
L LDL++NR+ + + L NL LDLS N L +++ + + L SL+ L L N++
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 51.8 bits (125), Expect = 1e-08
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L SL +N++ V+ D +F+ L L LDL+ N + ++S + + L +L +LDLS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 49.9 bits (120), Expect = 4e-08
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L++L L NN L+V+P A L PNL LDLS N L + +F GL SL LDLS N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 45.6 bits (109), Expect = 1e-06
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
++ LDLS+N L + L +LKVL ++ N +S+ A +GL L SL N
Sbjct: 1 NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 301 I 301
+
Sbjct: 60 L 60
Score = 39.4 bits (93), Expect = 2e-04
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 646 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+LK L +++N+ + + GA GL L L N + + +FS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSG 46
Score = 37.5 bits (88), Expect = 0.001
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L +LKVL ++ N +S+ A +GL L SL N +
Sbjct: 23 LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 32.5 bits (75), Expect = 0.067
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
NL +LDLS+N L + L +L+ L L N+++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37
Score = 28.3 bits (64), Expect = 2.0
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 105 SNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL 155
+ +TV+P +G+ L L +S L +IS AF GL S L++L L N L
Sbjct: 10 NRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS-LRSLDLSGNNL 60
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 57.7 bits (139), Expect = 8e-09
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 12/238 (5%)
Query: 156 SVVPTSALAPLAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA 213
P S L +A N L+LS N L + L L+ +S + L
Sbjct: 35 LNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLL- 93
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
L L L NRL ++ L L ++T LDL +N + + P S+LK L ++
Sbjct: 94 ---PLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLS 148
Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
N+ S+ L L L +L N + L LS L++LDL+ N+I + +
Sbjct: 149 DNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLP-PEI 205
Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
LS L LDLS+N + L ++ LK+L L L +N + PE I N L+L
Sbjct: 206 ELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262
Score = 55.0 bits (132), Expect = 7e-08
Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 9/212 (4%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
NL LDL +N + + S+L LDLS NK+ +L L L L+ L L N
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND 174
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L+ + L L ++ +LDLS N + P + LS+L+ L +++N + +L+
Sbjct: 175 LS-DLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIEL-LSSLSN 230
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L L+ L +N++ S LS L LDL++N+I ++S SL L+NL LDLS N
Sbjct: 231 LKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGN 287
Query: 348 -FLRALTQDLITPLKSLQELRLDDNDISMEPE 378
AL + L L L ++E +
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALELK 319
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 48.7 bits (116), Expect = 9e-06
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
LGL N L + ++ L +L ++LS N + S ++SL LDLSYN
Sbjct: 422 GLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ L L +LR+L L GN L+ V AAL G
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
Score = 45.2 bits (107), Expect = 1e-04
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L L ++L+ N I SL +++L LDLS+N + + L SL+ L L+
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 371 NDIS 374
N +S
Sbjct: 500 NSLS 503
Score = 40.6 bits (95), Expect = 0.003
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L+ + L GN + ++ +L + S+ LDLS+N G + P ++ +L+SL++L++ N
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNSL 502
Query: 278 SSVRRGALAGL 288
S AL G
Sbjct: 503 SGRVPAALGGR 513
Score = 34.0 bits (78), Expect = 0.29
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L L S++ N I S ++++L LDL++N SL L++L L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 348 FL 349
L
Sbjct: 501 SL 502
Score = 30.2 bits (68), Expect = 4.1
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSL 294
LR + ++LS N + G + P ++ ++SL+VL +++N F+ G++ L +LTSL
Sbjct: 441 LRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFN----GSIPESLGQLTSL 492
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 47.0 bits (112), Expect = 2e-05
Identities = 71/261 (27%), Positives = 96/261 (36%), Gaps = 55/261 (21%)
Query: 145 LQALGLPNNLLSVVPTSALAPLA---PNLDRLDLSHNQL------YKLENTSFKGLSSLN 195
LQ L L N L ALA P+L L LS N+ + L
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84
Query: 196 FLDLSYNKL----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ-GLRSV----TDLD 246
LDLS N L + + L +L+ L+L N L + L GL+ + L
Sbjct: 85 ELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143
Query: 247 LSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
L N L G L + LK L++A+N AG+ L
Sbjct: 144 LGRNRLEGASCEALA-KALRANRDLKELNLANNGIGD------AGIRALA---------- 186
Query: 303 VLEDHSFRALSTLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFLR-----AL 352
+A L LDL +N + A++ LA L +L L+L N L AL
Sbjct: 187 ----EGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNNLTDAGAAAL 241
Query: 353 TQDLITPLKSLQELRLDDNDI 373
L++P SL L L NDI
Sbjct: 242 ASALLSPNISLLTLSLSCNDI 262
Score = 43.5 bits (103), Expect = 2e-04
Identities = 59/232 (25%), Positives = 86/232 (37%), Gaps = 34/232 (14%)
Query: 74 CTANKSDLYAISESLRGLEPDERVSL----LDCTLSNVTVLPGKFLEGVTLHGLVISSGE 129
T + A++ +LR + + L + L +G L L +S
Sbjct: 33 NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92
Query: 130 LKNISDGAFIGL--SSPLQALGLPNNLLSVVPT----SALAPLAPNLDRLDLSHNQLYKL 183
L G L SS LQ L L NN L L L P L++L L N +L
Sbjct: 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN---RL 149
Query: 184 ENTS-------FKGLSSLNFLDLSYNKLM-----TLSQDCLAPLVTLRVLRLQGNRLT-- 229
E S + L L+L+ N + L++ L L VL L N LT
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDE 208
Query: 230 --VSVVAALQGLRSVTDLDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHN 275
++ L L+S+ L+L N L A L + + SL LS++ N
Sbjct: 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260
Score = 42.0 bits (99), Expect = 6e-04
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 227 RLTVSVVAALQGLRS---VTDLDLSHNLLAGPLGPSTVPRL---SSLKVLSIAHNQFSS- 279
R+ + + LQGL + +LDLS N L GP G + L SSL+ L + +N
Sbjct: 65 RIPRGLQSLLQGLTKGCGLQELDLSDNAL-GPDGCGVLESLLRSSSLQELKLNNNGLGDR 123
Query: 280 ----VRRGALAGLDKLTSLSCHHNQIDV--LEDHS--FRALSTLSHLDLAHNRI----VA 327
+ +G L L N+++ E + RA L L+LA+N I +
Sbjct: 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183
Query: 328 VSGASLAHLSNLTTLDLSHNFLR----ALTQDLITPLKSLQELRLDDNDIS 374
L NL LDL++N L + + + LKSL+ L L DN+++
Sbjct: 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
Score = 34.6 bits (80), Expect = 0.15
Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 145 LQALGLPNNLLSVVPTSALA---PLAPNLDRLDLSHNQL-----YKLENTSFKGLSSLNF 196
L+ L L NN + ALA NL+ LDL++N L L T L SL
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEV 225
Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLR---SVTDLDL 247
L+L N L L+ L+P ++L L L N +T + L S+ +LDL
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285
Query: 248 SHN 250
N
Sbjct: 286 RGN 288
Score = 32.7 bits (75), Expect = 0.62
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 145 LQALGLPNNLLSVVPTSALAP----LAPNLDRLDLSHNQLYKLENTSFKGLS-------S 193
L+ L L +N L+ +ALA +L L LS N + + K L+ S
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN---DITDDGAKDLAEVLAEKES 279
Query: 194 LNFLDLSYNKLMTLSQDCLAPL 215
L LDL NK LA
Sbjct: 280 LLELDLRGNKFGEEGAQLLAES 301
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.8 bits (95), Expect = 0.002
Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 56/274 (20%)
Query: 107 VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
+T +P E +T L++ + ELK++ + L ++ L +N L+ +P A L
Sbjct: 190 LTTIPACIPEQITT--LILDNNELKSLPEN----LQGNIKTLYANSNQLTSIP----ATL 239
Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
+ ++LS N++ +L + S+L LDL +NK+ L ++ L L V N
Sbjct: 240 PDTIQEMELSINRITELPE---RLPSALQSLDLFHNKISCLPENLPEELRYLSVYD---N 293
Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA 286
+ ++ A L +T L++ N L P T+P LK L N +S+
Sbjct: 294 SIR-TLPAHLPS--GITHLNVQSNSLTAL--PETLP--PGLKTLEAGENALTSLPASLPP 346
Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
+L L NQI VL + TL +TTLD+S
Sbjct: 347 ---ELQVLDVSKNQITVLPE-------TLP--------------------PTITTLDVSR 376
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
N L L ++L L+ +Q R N++ PE +
Sbjct: 377 NALTNLPENLPAALQIMQASR---NNLVRLPESL 407
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 35.5 bits (83), Expect = 0.003
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS 208
NL+ LDLS+NQ+ L L +L LDLS NK+ LS
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 32.8 bits (76), Expect = 0.025
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
L LDL++N+I + L++L NL TLDLS N + L+
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 31.7 bits (73), Expect = 0.069
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
NL TLDLS+N + L ++ L +L+ L L N I+
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKIT 36
Score = 30.9 bits (71), Expect = 0.14
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
+L+ L +++NQ + + L+ L L +L N+I
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKI 35
Score = 30.9 bits (71), Expect = 0.14
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 646 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
+L+ L +++NQ + + L+ L L +L N+I
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKI 35
Score = 29.0 bits (66), Expect = 0.74
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
L +L +NQI L L L LDL+ N+I
Sbjct: 2 NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKI 35
Score = 28.2 bits (64), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
+L LDLS N++ L L+ L L L L GN++T
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKIT 36
Score = 27.1 bits (61), Expect = 3.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
L L L N++T + L L ++ LDLS N +
Sbjct: 3 LETLDLSNNQITD--LPPLSNLPNLETLDLSGNKI 35
Score = 26.3 bits (59), Expect = 6.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
L+ L L NN ++ +P L+ L PNL+ LDLS N++ L
Sbjct: 3 LETLDLSNNQITDLP--PLSNL-PNLETLDLSGNKITDLSP 40
>gnl|CDD|217059 pfam02480, Herpes_gE, Alphaherpesvirus glycoprotein E.
Glycoprotein E (gE) of Alphaherpesvirus forms a complex
with glycoprotein I (gI) (pfam01688), functioning as an
immunoglobulin G (IgG) Fc binding protein. gE is
involved in virus spread but is not essential for
propagation.
Length = 437
Score = 38.9 bits (91), Expect = 0.007
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 523 YQVCATLGEFP-----TDKPLLHC---ITITNPFPSPPALPLAGPSTPTHSSHYTSLINL 574
Y V +T + +P L I P P +A PS T Y L+ L
Sbjct: 299 YTVLSTAETYVNVVVEVHRPRLGALDSIEPPPPPTPTPPAEIAPPSPGT--RPY--LLLL 354
Query: 575 SNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHAC-FIPVAQQEDDIN 626
+ VL VLL V+ ++ + R+ R P ++ + + + E +
Sbjct: 355 AGVLGAA-VLLLVVGLLAWVCVTRRRRRKPYAVILNPFSPVYTSLPTNELFED 406
>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 789
Score = 34.4 bits (79), Expect = 0.23
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 432 ILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTI 491
+L +A + G + LVP++ P+ + + L T ++V+LW + P ++TI
Sbjct: 467 MLIPAAFLAGLVILFGLVPSI---PIHNIIEPATSGIVLETAHLHVKLWHGFTPALMMTI 523
Query: 492 TLYIDGDVIV---------QKNTNCSRPWVSL 514
+I G +I Q N PW+S+
Sbjct: 524 ITFILGLLIYTKYDAIAAWQDRFNAKYPWISV 555
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 27.7 bits (63), Expect = 1.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 336 LSNLTTLDLSHNFLRALTQDL 356
L NL LDLS+N L +L
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKG 190
PNL LDLS+NQL L +F+G
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 27.7 bits (63), Expect = 1.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 336 LSNLTTLDLSHNFLRALTQDL 356
L NL LDLS+N L +L
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 27.3 bits (62), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKG 190
PNL LDLS+NQL L +F+G
Sbjct: 2 PNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase.
Length = 160
Score = 29.7 bits (66), Expect = 2.8
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 65 ACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLV 124
A + + LR ++ L A+ E R L+P RVS+LD SN +V F++G + +V
Sbjct: 47 AVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVT--TFMQGWMIDNVV 102
Query: 125 I 125
+
Sbjct: 103 V 103
>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 30.9 bits (71), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 229 TVSVVAALQGLRSVTDLDLSHNLL 252
T SV AAL G +S T +D+S+ L
Sbjct: 551 TASVHAALGGAKSTTTVDMSNTYL 574
>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription].
Length = 328
Score = 30.3 bits (69), Expect = 3.5
Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 41/151 (27%)
Query: 225 GNRLTVS-VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN----QFSS 279
G+R+T + AA+ DL L+ G + R++ V+ + Q
Sbjct: 160 GDRITCAGGTAAI---------DLMLALIRRDFGAALANRVARQLVVDPIRSGGDRQRLP 210
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339
+ +L I+++E + LS LA + L
Sbjct: 211 LLGRLGHRDPRLLRA------IELMEANLEEPLSL----------------EELADRAGL 248
Query: 340 TTLDLSHNFLRALTQDL-ITPLKSLQELRLD 369
+ R +L ++P + LRL+
Sbjct: 249 S----RRQLERLFRAELGVSPARYYLRLRLE 275
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 30.2 bits (68), Expect = 4.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 31 VTATSSPSTPTSTLPSSPSTPT 52
T TSSPS +T P+ ST T
Sbjct: 814 QTTTSSPSPTQTTSPTQTSTST 835
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 30.5 bits (68), Expect = 4.2
Identities = 86/309 (27%), Positives = 126/309 (40%), Gaps = 92/309 (29%)
Query: 77 NKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDG 136
N + L A+ LR LE L+++ VLP LE L I S L ++
Sbjct: 233 NLTSLPALPPELRTLEVSGN------QLTSLPVLPPGLLE------LSIFSNPLTHLP-- 278
Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL---------------Y 181
L S L L + N L+ +P L P L L +S NQL Y
Sbjct: 279 ---ALPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAY 330
Query: 182 KLENTSFKGL-SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG--NRLTVSVVAALQG 238
+ TS L S L L +S N+L +L P + + +L NRLT S+ A G
Sbjct: 331 NNQLTSLPTLPSGLQELSVSDNQLASL------PTLPSELYKLWAYNNRLT-SLPALPSG 383
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
L+ +L +S N L +++P L S LK L ++ N+ +S+ L SLS +
Sbjct: 384 LK---ELIVSGNRL------TSLPVLPSELKELMVSGNRLTSLPMLP----SGLLSLSVY 430
Query: 298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
NQ+ L + SL HLS+ TT++L N L T
Sbjct: 431 RNQLTRLPE-------------------------SLIHLSSETTVNLEGNPLSERT---- 461
Query: 358 TPLKSLQEL 366
L++L+E+
Sbjct: 462 --LQALREI 468
>gnl|CDD|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase;
Provisional.
Length = 400
Score = 30.1 bits (69), Expect = 4.4
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITP--LKSLQELRLDDNDISMEPECIYVGFNTMDLE 390
L HL L D ++LR L P L L+ RL+ P + V + L+
Sbjct: 59 LDHLCTLRLTDDELDYLRGLP--FFKPDFLDWLRLFRLN-------PYEVTVSIDDGQLD 109
Query: 391 LIYSGVWRHSTLL-IPVMLSLCTRSSVVTRYRYCVVLIE 428
+ G W + L +P+ L S + R R VL
Sbjct: 110 IRIEGPWLETILWEVPL---LAIISELYFRARSPEVLYA 145
>gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional.
Length = 488
Score = 29.5 bits (67), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 80 DLYAISESLRGLEPDERVSLLDCT 103
DL AI+E + G+E + +V L + T
Sbjct: 360 DLLAIAEDVLGIERERKVKLDELT 383
>gnl|CDD|213859 TIGR03767, P_acnes_RR, metallophosphoesterase, PPA1498 family.
This model describes a small collection of probable
metallophosphoresterases, related to pfam00149 but with
long inserts separating some of the shared motifs such
that the homology is apparent only through multiple
sequence alignment. Members of this protein family, in
general, have a Sec-independent TAT (twin-arginine
translocation) signal sequence, N-terminal to the region
modeled by This model. Members include YP_056203.1 from
Propionibacterium acnes KPA171202.
Length = 496
Score = 29.8 bits (67), Expect = 6.1
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 297 HHNQIDVLEDHSFRALSTLSHLDL-AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
H V +D F ++T SH+D RI+ ++ +S TTL + A
Sbjct: 397 HRRVEGVGKDKGFWEINTASHIDFPQQGRIIELADNQDGTVSIFTTL-IESAAPYAWDAA 455
Query: 356 LITPL 360
+ PL
Sbjct: 456 DLEPL 460
>gnl|CDD|147531 pfam05393, Hum_adeno_E3A, Human adenovirus early E3A glycoprotein.
This family consists of several early glycoproteins from
human adenoviruses.
Length = 94
Score = 27.6 bits (61), Expect = 6.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 578 LSLCLVLLCVLIVILICVLVRKICRTP 604
S+ L+ +C++I+ LIC L RK R P
Sbjct: 38 FSIALMFVCLIIMWLICCLKRKRARPP 64
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 29.1 bits (65), Expect = 7.7
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 517 LPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSS 566
+P T +P L + ++ FP P +G S+PT S
Sbjct: 10 PTLAPSLASTNKSSSSATPRPFLRFSSTSSIFPFKPLTTSSGTSSPTISD 59
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 25.3 bits (57), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 169 NLDRLDLSHNQLYKLEN 185
NL+ LDL N++ K+EN
Sbjct: 3 NLEELDLGDNKIKKIEN 19
>gnl|CDD|100598 PRK00561, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 259
Score = 28.7 bits (64), Expect = 8.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
+ST ++ + A ++V ++ L ++ DL NF L Q T + L E+++DD
Sbjct: 47 VSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQLKFTQI-DLLEVQIDD 104
>gnl|CDD|215381 PLN02711, PLN02711, Probable galactinol--sucrose
galactosyltransferase.
Length = 777
Score = 29.4 bits (66), Expect = 9.1
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 28/87 (32%)
Query: 54 WSCPSIKNDLCACDLPHTLRCTANKSD----------------LYAI----SESLRGLEP 93
W C + + CA HT+ A+ D ++A+ S+ L +P
Sbjct: 605 W-CRETRRNKCASQFSHTVTAKASPKDIEWNSGKSPISIEGVQVFAVYLFQSKKLVLSKP 663
Query: 94 DERVSL-LD------CTLSNVTVLPGK 113
E + + L+ T+S VT LPGK
Sbjct: 664 SENLEISLEPFNFELITVSPVTTLPGK 690
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 28.7 bits (64), Expect = 9.8
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 20/108 (18%)
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
VV L+ + + ++DLS N + +++++ L + FS G D+
Sbjct: 21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVV--NFSDAFTGRDK--DE 76
Query: 291 LTS---------LSCHHNQIDVLEDHSF--RALSTL-----SHLDLAH 322
L S L C Q L D++F L S DL H
Sbjct: 77 LYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVH 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,838,075
Number of extensions: 3238640
Number of successful extensions: 3420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3313
Number of HSP's successfully gapped: 82
Length of query: 694
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 590
Effective length of database: 6,324,786
Effective search space: 3731623740
Effective search space used: 3731623740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.3 bits)