RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8879
(694 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 196 bits (500), Expect = 1e-55
Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 16/326 (4%)
Query: 55 SCPSIKNDLCACDLP-HTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGK 113
CP C C + C + A+ E + LLD + + L
Sbjct: 2 GCPP----RCECSAQDRAVLCHRKR--FVAVPEGI-----PTETRLLDLGKNRIKTLNQD 50
Query: 114 FLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172
L L ++ + + GAF L + L+ LGL +N L ++P L NL +
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTLGLRSNRLKLIPLGVFTGL-SNLTK 108
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LD+S N++ L + F+ L +L L++ N L+ +S + L +L L L+ LT
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
AL L + L L H + + + RL LKVL I+H + LT
Sbjct: 169 TEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227
Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
SLS H + + + R L L L+L++N I + G+ L L L + L L +
Sbjct: 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287
Query: 353 TQDLITPLKSLQELRLDDNDISMEPE 378
L L+ L + N ++ E
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEE 313
Score = 168 bits (428), Expect = 1e-45
Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 4/244 (1%)
Query: 108 TVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
++P G++ L L IS ++ + D F L + L++L + +N L + A + L
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGL 151
Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
+L++L L L + + L L L L + + + L L+VL +
Sbjct: 152 -NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA 286
++ ++T L ++H L + V L L+ L++++N S++ L
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
L +L + Q+ V+E ++FR L+ L L+++ N++ + + + NL TL L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 347 NFLR 350
N L
Sbjct: 330 NPLA 333
Score = 131 bits (332), Expect = 7e-33
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 4/188 (2%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
+ + + + + + R+L L NR+ + +L+L+ N+
Sbjct: 11 AQDRAVLCHRKRFVAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
++ + P L +L+ L + N+ + G GL LT L N+I +L D+ F+
Sbjct: 68 VSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126
Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L L++ N +V +S + + L++L L L L ++ + ++ L L LRL
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 372 DISMEPEC 379
+I+ +
Sbjct: 187 NINAIRDY 194
Score = 48.6 bits (116), Expect = 5e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L+ L + N+ + G GL LT L N+I +L D+ F +
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126
Score = 47.4 bits (113), Expect = 1e-05
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 624 DINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 683
+I+ + + +L LSI H ++V A+ L L L+ +N I
Sbjct: 206 EISHWPYLDT---MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 684 LEDHSFSN 691
+E
Sbjct: 263 IEGSMLHE 270
Score = 46.6 bits (111), Expect = 2e-05
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L++++N S++ L L +L + Q+ V+E ++F
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Score = 46.2 bits (110), Expect = 2e-05
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +LK L + N + A +GL+ L L+ + + + S+
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Score = 46.2 bits (110), Expect = 3e-05
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS+L L I+ N+ + L L SL N + + +FS
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Score = 45.9 bits (109), Expect = 3e-05
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+SL+ L++ +S+ AL+ L L L H I+ + D+SF
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198
Score = 45.5 bits (108), Expect = 5e-05
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L + N S+V GA L L +L N++ ++ F+
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102
Score = 43.6 bits (103), Expect = 2e-04
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L L+ + + Q + V A GL+ L L+ NQ+ LE+ F +V
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319
Score = 42.0 bits (99), Expect = 6e-04
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ + ++L + N+ ++ + A L L + N + +E +F+N
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78
Score = 38.5 bits (90), Expect = 0.007
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFSN 691
L L VL + H +++R + L +L L H +D + +
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Score = 35.8 bits (83), Expect = 0.048
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L+ L+VL+++ NQ +++ + L +L N +
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 35.5 bits (82), Expect = 0.054
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L LKVL I+H + LTSLS H + + + +
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 179 bits (455), Expect = 7e-51
Identities = 82/352 (23%), Positives = 135/352 (38%), Gaps = 58/352 (16%)
Query: 35 SSPSTPTSTLPSSPST-PTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEP 93
+S P P P P CP C C L
Sbjct: 3 ASGIGPEEHFPEVPEIEPMGPVCPF----RCQCHL------------------------- 33
Query: 94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
++ C+ + +P L L + + ++ I DG F L + L L L NN
Sbjct: 34 ----RVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKN-LHTLILINN 86
Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA 213
+S + A APL L+RL LS NQL +L K L L + N++ + +
Sbjct: 87 KISKISPGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFN 142
Query: 214 PLVTLRVLRLQGNRLTVSVV--AALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKV 269
L + V+ L N L S + A QG++ ++ + ++ + +T+P+ SL
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------TTIPQGLPPSLTE 196
Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
L + N+ + V +L GL+ L L N I +++ S L L L +N++V V
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISM 375
G LA + + L +N + A+ + P S + L N +
Sbjct: 257 GG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Score = 151 bits (384), Expect = 6e-41
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 13/229 (5%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ L VP L P+ LDL +N++ ++++ FK L +L+ L L NK+ +S
Sbjct: 40 DLGLEKVPKD----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
APLV L L L N+L + L+ L + N + + S L+ + V+
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMPKTLQE---LRVHENEITK-VRKSVFNGLNQMIVVE 151
Query: 272 IAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
+ N S + GA G+ KL+ + I + +L+ L L N+I V
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD 208
Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
ASL L+NL L LS N + A+ + L+EL L++N + P
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Score = 122 bits (307), Expect = 1e-30
Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 19/227 (8%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL--SVVPTSALAP 165
LP K + L L + E+ + F GL+ + + L N L S + A
Sbjct: 113 KELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQG 169
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
+ L + ++ + + SL L L NK+ + L L L L L
Sbjct: 170 M-KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N ++ +L + +L L++N L P + ++V+ + +N S++
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 286 A------GLDKLTSLSCHHNQIDV--LEDHSFRALSTLSHLDLAHNR 324
+ +S N + ++ +FR + + + L + +
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 46.9 bits (112), Expect = 1e-05
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L SL L + N+ + V +L GL+ L L N I +++ S +N
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239
Score = 44.2 bits (105), Expect = 8e-05
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFSN 691
+ +L+ L + N+ + VR+ GL+++ + N + +E+ +F
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Score = 43.8 bits (104), Expect = 1e-04
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L + +N+ S + GA A L KL L NQ+ L +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT 122
Score = 41.5 bits (98), Expect = 6e-04
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L + +N+ + ++ G L L +L +N+I + +F+
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98
Score = 40.0 bits (94), Expect = 0.002
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L + IA +++ +G LT L N+I ++ S
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKG 214
Score = 40.0 bits (94), Expect = 0.002
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L++L L ++ N S+V G+LA L L ++N++ +
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Score = 38.1 bits (89), Expect = 0.008
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ + V+ + N S + GA G+ KL+ + I + +
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Score = 37.7 bits (88), Expect = 0.011
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L ++ NQ + L L H N+I + F+
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNG 143
Score = 32.7 bits (75), Expect = 0.36
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALA------GLDKLTSLSCHHNQIDV--LEDHSFSNV 692
++V+ + +N S++ + +S N + ++ +F V
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 179 bits (457), Expect = 5e-50
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 3/232 (1%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
G+S+ + L L N + ++ ++ L +L+ L LS N + +E +F GL++LN L+L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
N+L T+ L L+ L L+ N + A + S+ LDL +
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
LS+L+ L++A + L L KL L N + + SF+ L L L
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ ++I + + +L +L ++L+HN L L DL TPL L+ + L N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 142 bits (360), Expect = 8e-37
Identities = 59/235 (25%), Positives = 90/235 (38%), Gaps = 32/235 (13%)
Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201
S+ + L VP ++ N L+L NQ+ ++ SFK L L L LS
Sbjct: 42 SNQFSKVICVRKNLREVPDG----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97
Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
N + T+ L L L L NRLT + +
Sbjct: 98 NHIRTIEIGAFNGLANLNTLELFDNRLTT----------------IPNGAFVY------- 134
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSHLDL 320
LS LK L + +N S+ A + L L ++ + + +F LS L +L+L
Sbjct: 135 --LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192
Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 375
A + + +L L L LDLS N L A+ L LQ+L + + I +
Sbjct: 193 AMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Score = 124 bits (312), Expect = 2e-30
Identities = 62/264 (23%), Positives = 96/264 (36%), Gaps = 56/264 (21%)
Query: 85 SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
S + L E + L + + G F L+ L + L I +GAF+ L
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPNGAFVYL--- 135
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-YNK 203
L L L +N + + + +F + SL LDL +
Sbjct: 136 -----------------------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 204 LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR 263
L +S+ L LR L L L + L L + +LDLS
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLS--------------- 215
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
N S++R G+ GL L L +QI V+E ++F L +L ++LAHN
Sbjct: 216 ----------GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 324 RIVAVSGASLAHLSNLTTLDLSHN 347
+ + L +L + L HN
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289
Score = 103 bits (259), Expect = 9e-24
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
+ L+L N + + ++ L L++L ++ N ++ GA GL L +L N
Sbjct: 64 TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-NFLRALTQDLIT 358
++ + + +F LS L L L +N I ++ + + +L LDL L +++
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 359 PLKSLQELRLDDNDISMEPE 378
L +L+ L L ++ P
Sbjct: 183 GLSNLRYLNLAMCNLREIPN 202
Score = 49.0 bits (117), Expect = 3e-06
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L L ++ N S++R G+ GL L L +QI V+E ++F N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253
Score = 47.1 bits (112), Expect = 1e-05
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++L L + N+ +++ GA L KL L +N I+ + ++F+
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Score = 45.1 bits (107), Expect = 5e-05
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 97 VSLLDCTLSN---VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
+ L + LS + PG F + L L + +++ I AF L S L + L +N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS-LVEINLAHN 265
Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQL 180
L+++P PL +L+R+ L HN
Sbjct: 266 NLTLLPHDLFTPL-HHLERIHLHHNPW 291
Score = 44.4 bits (105), Expect = 1e-04
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L++L ++ N ++ GA GL L +L N++ + + +F
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134
Score = 42.4 bits (100), Expect = 4e-04
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS+L+ L++A + L L KL L N + + SF
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Score = 42.0 bits (99), Expect = 5e-04
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L + +Q + R A L L ++ HN + +L F+
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277
Score = 42.0 bits (99), Expect = 5e-04
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++ ++L++ NQ ++ + L L L N I +E +F+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110
Score = 40.5 bits (95), Expect = 0.002
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFSN 691
LS LK L + +N S+ A + L L ++ + + +F
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Score = 37.8 bits (88), Expect = 0.010
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 644 LSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+ SL+ L + + S + GA GL L L+ + + +
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Score = 34.0 bits (78), Expect = 0.16
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 679
L SL +++AHN + + L L + HHN
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 178 bits (454), Expect = 2e-49
Identities = 65/232 (28%), Positives = 103/232 (44%), Gaps = 3/232 (1%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
G+ S + L L N + ++ L +L+ L L N + ++E +F GL+SLN L+L
Sbjct: 72 GIPSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
N L + L LR L L+ N + A + S+ LDL +
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
L +LK L++ + L L L L N + SF LS+L L
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248
Query: 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ ++++ + + L++L L+L+HN L +L DL TPL+ L EL L N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 161 bits (408), Expect = 3e-43
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 8/238 (3%)
Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201
S+ + LS VP + N L+L N + ++ +F+ L L L L
Sbjct: 53 SNQFSKVVCTRRGLSEVPQG----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108
Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
N + + L +L L L N LTV A + L + +L L +N + +
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAF 167
Query: 262 PRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 320
R+ SL L + + + GA GL L L+ I + + L L L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225
Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
+ N + S LS+L L + ++ + + ++ L SL EL L N++S P
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283
Score = 156 bits (395), Expect = 2e-41
Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 43/305 (14%)
Query: 46 SSPSTPTPWSCPSIKNDLCACD-LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTL 104
++ ++ P +CPS +C+C + CT L + + + L+
Sbjct: 36 AAAASAGPQNCPS----VCSCSNQFSKVVCTRRG--LSEVPQGI-----PSNTRYLNLME 84
Query: 105 SNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
+N+ ++ + L L + ++ I GAF GL+S L L L +N L+V+P+ A
Sbjct: 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAF 143
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-YNKLMTLSQDCLAPLVTLRVLR 222
L L L L +N + + + +F + SL LDL KL +S+ L L+ L
Sbjct: 144 EYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202
Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
L + + L L + +L++S N F +R
Sbjct: 203 LGMCNIK--DMPNLTPLVGLEELEMS-------------------------GNHFPEIRP 235
Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
G+ GL L L ++Q+ ++E ++F L++L L+LAHN + ++ L L L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295
Query: 343 DLSHN 347
L HN
Sbjct: 296 HLHHN 300
Score = 104 bits (261), Expect = 6e-24
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVVPTSAL 163
+TV+P E ++ L L + + +++I AF + S L L L L + A
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYISEGAF 192
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
L NL L+L + + + L L L++S N + L +L+ L +
Sbjct: 193 EGL-FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
+++++ A GL S+ +L+L+HN L+ L L L L + HN +
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302
Score = 49.4 bits (118), Expect = 3e-06
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L ++ N F +R G+ GL L L ++Q+ ++E ++F
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264
Score = 47.4 bits (113), Expect = 1e-05
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+SL L + N + + GA L KL L +N I+ + ++F+
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Score = 43.2 bits (102), Expect = 3e-04
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+VL + N + GA GL L +L N + V+ +F
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145
Score = 42.8 bits (101), Expect = 3e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LSSLK L + ++Q S + R A GL L L+ HN + L F+
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Score = 42.0 bits (99), Expect = 5e-04
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S+ + L++ N ++ L L L N I +E +F+
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121
Score = 40.9 bits (96), Expect = 0.001
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +LK L++ + L L L L N + SF
Sbjct: 195 LFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Score = 39.3 bits (92), Expect = 0.003
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFSN 691
LS L+ L + +N S+ A + L L +++ + + +F
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Score = 38.2 bits (89), Expect = 0.009
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 644 LSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+ SL L + + + GA GL L L+ I + +
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213
Score = 34.3 bits (79), Expect = 0.11
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 679
L+SL L++AHN SS+ L L L HHN
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 172 bits (437), Expect = 3e-48
Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 25/286 (8%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
+ C+ + +P + TL L + + ++ + F GL L AL L NN +S +
Sbjct: 38 VQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIH 94
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
A +PL L +L +S N L ++ L L + N++ + + + L +
Sbjct: 95 EKAFSPL-RKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMN 150
Query: 220 VLRLQGNRLTVSVV--AALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHN 275
+ + GN L S A GL + L +S L + +P+ +L L + HN
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL------TGIPKDLPETLNELHLDHN 203
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
+ ++ L KL L HNQI ++E+ S L TL L L +N++ V L
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPD 262
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLK------SLQELRLDDNDISM 375
L L + L N + + + P+ + L +N +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308
Score = 152 bits (386), Expect = 3e-41
Identities = 75/350 (21%), Positives = 136/350 (38%), Gaps = 36/350 (10%)
Query: 35 SSPSTPTSTLPSSPSTPTPWS--CPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLE 92
+S + TS +P S P +S CP C C L ++C+ L A+ + +
Sbjct: 4 ASGAETTSGIPDLDSLPPTYSAMCPF----GCHCHL-RVVQCSDLG--LKAVPKEI---- 52
Query: 93 PDERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLP 151
+LLD ++++ L +G+ L+ LV+ + ++ I + AF L LQ L +
Sbjct: 53 -SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK-LQKLYIS 110
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL--MTLSQ 209
N L +P + +L L + N++ K+ F GL ++N +++ N L
Sbjct: 111 KNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
L L LR+ +LT + L L L HN + + + R S L
Sbjct: 167 GAFDGL-KLNYLRISEAKLTGIPKDLPETLNE---LHLDHNKIQA-IELEDLLRYSKLYR 221
Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
L + HNQ + G+L+ L L L +N++ + L L + L N I V
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVG 280
Query: 330 GASLAHL------SNLTTLDLSHNFL--RALTQDLITPLKSLQELRLDDN 371
+ + + L +N + + + ++ +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 145 bits (368), Expect = 8e-39
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 14/236 (5%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L+ + + L VP ++P+ LDL +N + +L FKGL L L L NK+
Sbjct: 35 LRVVQCSDLGLKAVPKE----ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+ + +PL L+ L + N L L L + N + + L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE---LRIHDNRIRK-VPKGVFSGL 146
Query: 265 SSLKVLSIAHNQ--FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
++ + + N S GA GL KL L ++ + L+ L L H
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL---HLDH 202
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
N+I A+ L S L L L HN +R + ++ L +L+EL LD+N +S P
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Score = 117 bits (296), Expect = 3e-29
Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 14/213 (6%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L I ++ + G F GL + + + + N L A L+ L +S +
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
L + +LN L L +NK+ + + L L L L N++ + +L L
Sbjct: 184 LTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD------KLTS 293
++ +L L +N L+ P+ +P L L+V+ + N + V +
Sbjct: 241 PTLRELHLDNNKLSRV--PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298
Query: 294 LSCHHNQIDV--LEDHSFRALSTLSHLDLAHNR 324
+S +N + ++ +FR ++ + + +
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 88.2 bits (219), Expect = 4e-19
Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 15/206 (7%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
+ G+ L+ L +Y+ + C LRV++ L +V + T LD
Sbjct: 9 TTSGIPDLDSLPPTYSAMCPFGCHC-----HLRVVQCSDLGLK-AVPKEI--SPDTTLLD 60
Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
L +N ++ L L L L + +N+ S + A + L KL L N + +
Sbjct: 61 LQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
Query: 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR--ALTQDLITPLKSLQ 364
+ +L L + NRI V + L N+ +++ N L LK L
Sbjct: 120 NLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175
Query: 365 ELRLDDNDISMEPECIYVGFNTMDLE 390
LR+ + ++ P+ + N + L+
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLD 201
Score = 47.3 bits (113), Expect = 8e-06
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L +L L + HN+ ++ L KL L HNQI ++E+ S S +
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240
Score = 43.1 bits (102), Expect = 2e-04
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L L + +N+ S + A + L KL L N + + + S+
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS 124
Score = 41.9 bits (99), Expect = 5e-04
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+L + +N S +R+ GL L +L +N+I + + +FS
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100
Score = 40.8 bits (96), Expect = 0.001
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFSN 691
L SSL L I N+ V +G +GL + + N + E +F
Sbjct: 121 LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Score = 40.4 bits (95), Expect = 0.002
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
S L L + HNQ + G+L+ L L L +N++ +
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Score = 38.5 bits (90), Expect = 0.006
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L +L+ L + +N+ S V G L L L + H N I + + F V
Sbjct: 240 LPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Score = 38.1 bits (89), Expect = 0.007
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L I+ N + + L L H N+I + FS
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSG 145
Score = 34.6 bits (80), Expect = 0.10
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 646 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L I+ + + + + L L HN+I +E
Sbjct: 173 KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLR 215
Score = 31.1 bits (71), Expect = 1.1
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLD------KLTSLSCHHNQIDV--LEDHSFSNV 692
L L+V+ + N + V + +S +N + ++ +F V
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 167 bits (426), Expect = 4e-47
Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 8/240 (3%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK--LENTSFKGLSSLNFL 197
G+ S L L +N L +P L L +L LS N L + S G +SL +L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83
Query: 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPL 256
DLS+N ++T+S + L L L Q + L +S + LR++ LD+SH
Sbjct: 84 DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-A 141
Query: 257 GPSTVPRLSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
LSSL+VL +A N F + L LT L Q++ L +F +LS+L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL-KSLQELRLDDNDIS 374
L+++HN ++ L++L LD S N + + + SL L L ND +
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 159 bits (405), Expect = 3e-44
Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 7/251 (2%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
+ C +T +P T L + S +L+++ G F L+ L L L +N LS
Sbjct: 12 IRCNSKGLTSVPTGIPSSATR--LELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKG 68
Query: 160 TSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL-APLVT 217
+ + +L LDLS N + + + F GL L LD ++ L +S+ + L
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L L + V+ GL S+ L ++ N P L +L L ++ Q
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL- 336
+ A L L L+ HN L+ ++ L++L LD + N I+ L H
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 337 SNLTTLDLSHN 347
S+L L+L+ N
Sbjct: 248 SSLAFLNLTQN 258
Score = 157 bits (400), Expect = 2e-43
Identities = 62/230 (26%), Positives = 92/230 (40%), Gaps = 8/230 (3%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT--LSQ 209
+ L+ VPT + + RL+L N+L L + F L+ L L LS N L
Sbjct: 16 SKGLTSVPTG----IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
+L+ L L N + ++ + GL + LD H+ L S L +L
Sbjct: 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNRIVAV 328
L I+H G GL L L N + F L L+ LDL+ ++ +
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
S + LS+L L++SHN +L L SLQ L N I +
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Score = 46.2 bits (110), Expect = 2e-05
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
LSSL+VL+++HN F S+ L+ L L N I + +
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
Score = 45.8 bits (109), Expect = 2e-05
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L ++ Q + A L L L+ HN L+ +
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Score = 43.5 bits (103), Expect = 1e-04
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LSSL+VL +A N F + L LT L Q++ L +F++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Score = 40.4 bits (95), Expect = 0.001
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFSN 691
L +L L I+H G GL L L N + F+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Score = 40.0 bits (94), Expect = 0.002
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
S+ T L+L N L++L + L L +L L N +S + C F T L+ +
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Score = 40.0 bits (94), Expect = 0.002
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 630 SDSRYVKLQATTILLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHS 688
S + + + + + L L+ L H+ + L L L H V +
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 689 FSN 691
F+
Sbjct: 146 FNG 148
Score = 38.1 bits (89), Expect = 0.007
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ SS L + N+ S+ G L +LT LS N + S S+
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
+SLK L ++ N ++ GL++L L H+ + + + S
Sbjct: 77 TTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 167 bits (425), Expect = 4e-46
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 21/295 (7%)
Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
+ S + LP L+ + L ++ +++ I AF + +Q L + N + +
Sbjct: 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIRYL 108
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
P + P L L L N L L F L L +S N L + D +L
Sbjct: 109 PPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
+ L+L NRLT L + S+ ++S+NLL ST+ +++ L +HN +
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN 218
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
VR +LT L HN + + L +DL++N + + +
Sbjct: 219 VVRGPVNV---ELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
L L +S+N L AL P+ +L+ L L N + LE +Y
Sbjct: 274 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ---PQFDRLENLY 324
Score = 161 bits (410), Expect = 6e-44
Identities = 51/295 (17%), Positives = 107/295 (36%), Gaps = 24/295 (8%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
+ + + + I I L++ + + N+ + +P
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLP 61
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
+ L ++ L+L+ Q+ +++ +F ++ L + +N + L + L
Sbjct: 62 AALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
VL L+ N L+ +T L +S+N L + T +SL+ L ++ N+ +
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 179
Query: 280 VRRGALAGLDK----------------LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
V + L + L HN I+V+ L+ L L HN
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHN 236
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
+ + L + L +DLS+N L + ++ L+ L + +N +
Sbjct: 237 NLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289
Score = 153 bits (389), Expect = 4e-41
Identities = 61/280 (21%), Positives = 104/280 (37%), Gaps = 29/280 (10%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
F T+ L + ++ + F + L L L N LS +P P L
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFHNT-PKL 143
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT------------- 217
L +S+N L ++E+ +F+ +SL L LS N+L + + L
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203
Query: 218 ---LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
+ L N + V L L L HN L + + L + +++
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTI---LKLQHNNLTDT---AWLLNYPGLVEVDLSY 257
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
N+ + + +L L +N++ L + + + TL LDL+HN ++ V +
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE-RNQP 315
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L L L HN + L +L+ L L ND
Sbjct: 316 QFDRLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWD 352
Score = 117 bits (294), Expect = 2e-28
Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 4/200 (2%)
Query: 181 YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLR 240
YK +++ + + + L +++ + + + A L R
Sbjct: 10 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
V L+L+ + + +++ L + N + + LT L N
Sbjct: 70 QVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
+ L F L+ L +++N + + + ++L L LS N L + L +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL---I 185
Query: 361 KSLQELRLDDNDISMEPECI 380
SL + N +S I
Sbjct: 186 PSLFHANVSYNLLSTLAIPI 205
Score = 92.0 bits (229), Expect = 4e-20
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 19/193 (9%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
+ L S + + + L L L +N L+ L P L +DLS+N+
Sbjct: 207 VEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNE 259
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
L K+ F + L L +S N+L+ L+ P+ TL+VL L N L V
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQF 317
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
+ +L L HN + T+ +LK L+++HN + AL + +
Sbjct: 318 DRLENLYLDHNSI------VTLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 369
Query: 298 HNQIDVLEDHSFR 310
D+
Sbjct: 370 DADQHCKIDYQLE 382
Score = 65.5 bits (160), Expect = 2e-11
Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 5/110 (4%)
Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-----LSTLSHLDLAHNRIVAV 328
+N + + ID+ + L+ + ++ + +
Sbjct: 1 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60
Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
A L + L+L+ + + ++Q+L + N I P
Sbjct: 61 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110
Score = 46.2 bits (110), Expect = 2e-05
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L VL + N SS+ RG KLT+LS +N ++ +ED +F
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Score = 45.4 bits (108), Expect = 4e-05
Identities = 7/48 (14%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++ K+++ ++ + L ++ L+ + QI+ ++ ++F+
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 91
Score = 45.0 bits (107), Expect = 5e-05
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+++L++ Q + A A + L N I L H F N
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115
Score = 43.1 bits (102), Expect = 2e-04
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+++ L + N + + LT L N + L F N
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Score = 42.0 bits (99), Expect = 4e-04
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L LS+++N + L +L N++ ++ ++
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
Score = 40.4 bits (95), Expect = 0.002
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L +L + HN + L L + +N+++ + H F
Sbjct: 224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Score = 38.1 bits (89), Expect = 0.008
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L + +++N+ + + +L L +N++ L
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Score = 35.0 bits (81), Expect = 0.067
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ +LKVL ++HN V R D+L +L HN I L+ +
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHT 340
Score = 32.7 bits (75), Expect = 0.38
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ SL ++++N S+ LA + L HN I+V+
Sbjct: 184 LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVE 227
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 163 bits (415), Expect = 8e-46
Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 6/221 (2%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
L VP + R+ L N++ + SF+ +L L L N L +
Sbjct: 20 QQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 212 LAPLVTLRVLRLQGN-RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
L L L L N +L A GL + L L L LGP L++L+ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYL 134
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
+ N ++ L LT L H N+I + + +FR L +L L L NR+ V
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 123 bits (312), Expect = 1e-31
Identities = 60/199 (30%), Positives = 83/199 (41%), Gaps = 5/199 (2%)
Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL-LSVVPTSAL 163
++ +P L L + S L I AF GL+ L+ L L +N L V +
Sbjct: 43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATF 101
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
L L L L L +L F+GL++L +L L N L L D L L L L
Sbjct: 102 HGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
GNR++ A +GL S+ L L N +A + P L L L + N S++
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 284 ALAGLDKLTSLSCHHNQID 302
ALA L L L + N
Sbjct: 220 ALAPLRALQYLRLNDNPWV 238
Score = 123 bits (310), Expect = 2e-31
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 24/187 (12%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
++ + L N++ + L +L L N L AA GL + LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN- 90
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
Q SV GL +L +L + L FR
Sbjct: 91 -----------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L+ L +L L N + A+ + L NLT L L N + ++ + L SL L L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 372 DISMEPE 378
++
Sbjct: 188 RVAHVHP 194
Score = 48.8 bits (117), Expect = 2e-06
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L + N+ SSV A GL L L H N++ + H+F +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Score = 46.1 bits (110), Expect = 2e-05
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++L+ L + N ++ L LT L H N+I + + +F
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Score = 45.8 bits (109), Expect = 2e-05
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L L + + G GL L L N + L D +F +
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Score = 44.2 bits (105), Expect = 7e-05
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L SL L + N+ + V A L +L +L N + L + +
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Score = 42.3 bits (100), Expect = 3e-04
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFSN 691
+L +L + N + + A GL L L N Q+ ++ +F
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Score = 41.5 bits (98), Expect = 6e-04
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ ++ + + + N+ S V + LT L H N + ++ +F+
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Score = 39.2 bits (92), Expect = 0.003
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L+ L ++ N Q SV GL +L +L + L F
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Score = 34.2 bits (79), Expect = 0.10
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L L L + N S++ ALA L L L + N
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 165 bits (420), Expect = 7e-44
Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 21/295 (7%)
Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
+ S + LP L+ + L ++ +++ I AF + +Q L + N + +
Sbjct: 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIRYL 114
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
P + P L L L N L L F L L +S N L + D +L
Sbjct: 115 PPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
+ L+L NRLT ++ + L ++S+NLL ST+ +++ L +HN +
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL------STLAIPIAVEELDASHNSIN 224
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
VR +LT L HN + + L +DL++N + + +
Sbjct: 225 VVRGPVNV---ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
L L +S+N L AL P+ +L+ L L N + LE +Y
Sbjct: 280 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ---PQFDRLENLY 330
Score = 163 bits (413), Expect = 7e-43
Identities = 58/286 (20%), Positives = 105/286 (36%), Gaps = 23/286 (8%)
Query: 98 SLLDCTLSNVTVLPGKFLEGVTLHG---LVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
D + T E +TL+ + + ++ + ++ L L +
Sbjct: 28 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQ 86
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
+ + T A A + +L + N + L F+ + L L L N L +L +
Sbjct: 87 IEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSI 272
L L + N L Q S+ +L LS N L + V + SL ++
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------THVDLSLIPSLFHANV 199
Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
++N S+ LA + L HN I+V+ L+ L L HN + +
Sbjct: 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLTDTA--W 249
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
L + L +DLS+N L + ++ L+ L + +N +
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Score = 133 bits (336), Expect = 6e-33
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 15/243 (6%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG-----LSSLNFLDLSYNKLMT 206
N+ P D + + G L++ + + +
Sbjct: 7 YNVKPRQPEYKCIDSNLQYD-CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65
Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS 266
L L + +L L ++ A ++ L + N + L P +
Sbjct: 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 124
Query: 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L +L L+ NR+
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 327 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNT 386
V L+ + +L ++S+N L L +++EL N I++ + V
Sbjct: 185 HVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTI 236
Query: 387 MDL 389
+ L
Sbjct: 237 LKL 239
Score = 110 bits (277), Expect = 2e-25
Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 6/181 (3%)
Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG-----LRSVTDLDLSHNLLA 253
YN + + + G L + + ++ +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 313
L + + +++L++ Q + A A + L N I L H F+ +
Sbjct: 65 K-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
L+ L L N + ++ + LTTL +S+N L + D SLQ L+L N +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 374 S 374
+
Sbjct: 184 T 184
Score = 99.6 bits (248), Expect = 6e-22
Identities = 57/269 (21%), Positives = 99/269 (36%), Gaps = 29/269 (10%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
+ L S + + + L L L +N L+ L P L +DLS+N+
Sbjct: 213 VEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNE 265
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
L K+ F + L L +S N+L+ L+ P+ TL+VL L N L V
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQF 323
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
+ +L L HN + T+ +LK L+++HN + AL + +
Sbjct: 324 DRLENLYLDHNSI------VTLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 375
Query: 298 HNQIDVLEDHSFRALSTLSHLD----------LAHNRIVAVSGASLAHLSNLTTLDLSHN 347
D+ D +A +V + S T++ +
Sbjct: 376 DADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQS 435
Query: 348 FLRALTQDLITPLKSLQELRLDDNDISME 376
+TQ PL+ ++L + N++ E
Sbjct: 436 LSHYITQQGGVPLQGNEQLEAEVNELRAE 464
Score = 45.7 bits (108), Expect = 4e-05
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L VL + N SS+ RG KLT+LS +N ++ +ED +F
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Score = 44.9 bits (106), Expect = 7e-05
Identities = 7/48 (14%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++ K+++ ++ + L ++ L+ + QI+ ++ ++F+
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97
Score = 44.5 bits (105), Expect = 9e-05
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+++L++ Q + A A + L N I L H F N
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Score = 43.4 bits (102), Expect = 2e-04
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+++ L + N + + LT L N + L F N
Sbjct: 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Score = 42.2 bits (99), Expect = 5e-04
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L LS+++N + L +L N++ ++ ++
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
Score = 39.9 bits (93), Expect = 0.003
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L +L + HN + L L + +N+++ + H F
Sbjct: 230 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276
Score = 38.8 bits (90), Expect = 0.006
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L + +++N+ + + +L L +N++ L
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Score = 35.3 bits (81), Expect = 0.073
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ +LKVL ++HN V R D+L +L HN I L+ +
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHT 346
Score = 32.6 bits (74), Expect = 0.55
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ SL ++++N S+ LA + L HN I+V+
Sbjct: 190 LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVE 233
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 166 bits (422), Expect = 1e-43
Identities = 72/280 (25%), Positives = 118/280 (42%), Gaps = 17/280 (6%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L + EL +SD F ++ L L L +N + + + NL LDLSHN
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNG 132
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA--PLVTLRVLRLQGNRLTVSVVAALQ 237
L + + L +L L LS NK+ L + L +L+ L L N++
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Query: 238 GLRSVTDLDLSHNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTS 293
+ + L L++ L +S++ LS++++Q S+ GL LT
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF----- 348
L +N ++V+ + SF L L + L +N I + SL L N+ L+L +F
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 349 ----LRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF 384
L + LK L+ L ++DNDI ++ G
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Score = 165 bits (420), Expect = 3e-43
Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 15/265 (5%)
Query: 129 ELKNISDGAFIGLS-SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK-LENT 186
L+ +++ F+ L+ SPL L L N +S + + A + L +L+ LDL N++ + L
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQ 424
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT--VSVVAALQGLRSVTD 244
++GL ++ + LSYNK + L+++ A + +L+ L L+ L S + Q LR++T
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA--------LAGLDKLTSLSC 296
LDLS+N +A + + L L++L + HN + + + A L GL L L+
Sbjct: 485 LDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
N D + F+ L L +DL N + + + + +L +L+L N + ++ + +
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Query: 357 ITP-LKSLQELRLDDNDISMEPECI 380
P ++L EL + N E I
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESI 628
Score = 160 bits (407), Expect = 1e-41
Identities = 65/311 (20%), Positives = 128/311 (41%), Gaps = 17/311 (5%)
Query: 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
+SL + LS + L+ L L +S L + + +F L L+ L N
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLEYNN 283
Query: 155 LSVVPTSALAP--------LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
+ + + +L L + + +S L K+++ SF+ L L L++ N +
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ----GLRSVTDLDLSHNLLAGPLGPSTVP 262
+ + L+ L+ L L + ++ + + L+L+ N ++ +
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFS 402
Query: 263 RLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
L L+VL + N+ + GL+ + + +N+ L +SF + +L L L
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 322 HNRI--VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
+ V S + L NLT LDLS+N + + D++ L+ L+ L L N+++ +
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 380 IYVGFNTMDLE 390
G L+
Sbjct: 523 ANPGGPIYFLK 533
Score = 160 bits (407), Expect = 1e-41
Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 10/254 (3%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ + L+ VP L N+ L+L+HNQL +L +F S L LD+ +N +
Sbjct: 6 HEVADCSHLKLTQVPDD----LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
L + L L+VL LQ N L+ ++T+L L N + + + +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQ 120
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLDLAH 322
+L L ++HN SS + G L+ L L +N+I L+ S+L L+L+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT---PLKSLQELRLDDNDISMEPEC 379
N+I S + L L L++ L + + S++ L L ++ +S
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 380 IYVGFNTMDLELIY 393
++G +L ++
Sbjct: 241 TFLGLKWTNLTMLD 254
Score = 159 bits (403), Expect = 3e-41
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 9/242 (3%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
L + + L L +N L +P + L LD+ N + KLE + L L L+L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
+N+L LS A L L L N + +++ LDLSHN L+
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLG 139
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
T +L +L+ L +++N+ +++ L L L NQI F A+ L
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 318 LDLAHNRIVAVSGASLA---HLSNLTTLDLSHNFLRALTQDLITPLK--SLQELRLDDND 372
L L + ++ L +++ L LS++ L + LK +L L L N+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 373 IS 374
++
Sbjct: 260 LN 261
Score = 154 bits (390), Expect = 2e-39
Identities = 66/323 (20%), Positives = 124/323 (38%), Gaps = 33/323 (10%)
Query: 87 SLRGLEPDERVSLLDCTLS-------NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAF 138
L + L L+ N+ V+ + L + ++++ +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 139 IGLSSPLQALGLPNNL---------LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
GL + ++ L L + L + + L L+ L++ N + +++ F
Sbjct: 293 HGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFT 350
Query: 190 GLSSLNFLDLSYNKL--MTLSQDCLAPLVT--LRVLRLQGNRLTVSVVAALQGLRSVTDL 245
GL +L +L LS + TL+ + L L +L L N+++ A L + L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
DL N + L L ++ + +++N++ + R + A + L L + ++
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 306 D--HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD-------- 355
F+ L L+ LDL++N I ++ L L L LDL HN L L +
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530
Query: 356 LITPLKSLQELRLDDNDISMEPE 378
+ L L L L+ N P
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPV 553
Score = 131 bits (331), Expect = 5e-32
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 6/187 (3%)
Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
S D S+ KL + D + VL L N+L A +T LD+ N +
Sbjct: 5 SHEVADCSHLKLTQVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
+ L P +L LKVL++ HN+ S + A LT L N I ++++ F
Sbjct: 62 SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT--PLKSLQELRLDD 370
L LDL+HN + + + L NL L LS+N ++AL + + SL++L L
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 371 NDISMEP 377
N I
Sbjct: 181 NQIKEFS 187
Score = 117 bits (296), Expect = 1e-27
Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
V+ V +LT V L ++T L+L+HN L L + R S L L + N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
S + L L L+ HN++ L D +F + L+ L L N I +
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
NL TLDLSHN L + L++LQEL L +N I
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Score = 98.9 bits (247), Expect = 1e-21
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 13/184 (7%)
Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISD--GAFIGLSSPLQALGLPNNLLSVVPTSA 162
L V L L++ LKN+ F L + L L L NN ++ +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-LTILDLSNNNIANINDDM 499
Query: 163 LAPLAPNLDRLDLSHNQLYKLEN--------TSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L L L+ LDL HN L +L KGLS L+ L+L N + +
Sbjct: 500 LEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L+++ L N L + S+ L+L NL+ P +L L +
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 275 NQFS 278
N F
Sbjct: 619 NPFD 622
Score = 45.4 bits (108), Expect = 6e-05
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L LKVL++ HN+ S + A LT L N I ++++ F
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Score = 44.6 bits (106), Expect = 1e-04
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L +L++ N F + L +L + N ++ L F+N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582
Score = 44.2 bits (105), Expect = 1e-04
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++L L + N ++ L +L HN + + +
Sbjct: 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Score = 43.5 bits (103), Expect = 2e-04
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +++ VL++ HNQ + +LTSL N I LE
Sbjct: 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Score = 42.7 bits (101), Expect = 4e-04
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S L L + N S + L L L+ HN++ L D +F+
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95
Score = 42.7 bits (101), Expect = 4e-04
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+L L ++HN SS + G L+ L L +N+I L+
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Score = 41.5 bits (98), Expect = 9e-04
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++L +L +++N + V + A L +L +N I L HS
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294
Score = 41.1 bits (97), Expect = 0.001
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVI 693
L +L +L +++N +++ L GL+KL L HN + L H+
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Score = 38.4 bits (90), Expect = 0.009
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L LK++ + N +++ L SL+ N I +E F
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607
Score = 36.9 bits (86), Expect = 0.021
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L+ L +++N+ +++ L L L NQI F
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Score = 36.9 bits (86), Expect = 0.025
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 644 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L L+VL + N+ + GL+ + + +N+ L +SF+ V
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Score = 36.5 bits (85), Expect = 0.032
Identities = 6/47 (12%), Positives = 20/47 (42%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
L ++ + +++N++ + R + A + L L + ++
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Score = 36.1 bits (84), Expect = 0.038
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 624 DINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQI 681
+N + + +S++ LS++++Q S+ GL LT L +N +
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 682 DVLEDHSFSN 691
+V+ + SF+
Sbjct: 261 NVVGNDSFAW 270
Score = 36.1 bits (84), Expect = 0.044
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ SL+ L + +V L LT L +N I + D
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502
Score = 35.7 bits (83), Expect = 0.055
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN--QIDVLEDHSFSN 691
L L+ L++ N ++ GL L LS ++ + L + +F +
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Score = 35.0 bits (81), Expect = 0.085
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 644 LSSLKVLSIAHNQFSSVRRGA--------LAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L++L + HN + + + A L GL L L+ N D + F +
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558
Score = 34.6 bits (80), Expect = 0.11
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFSN 691
S L +L++ N+ S + A + L L L N+I L +
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Score = 34.2 bits (79), Expect = 0.17
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L S SI+ + + L L L+ N I ++ + F+
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Score = 33.8 bits (78), Expect = 0.23
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
SSLK L ++ NQ G + +L L ++ Q+
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Score = 33.1 bits (76), Expect = 0.36
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN---------QIDVLEDHSFSN 691
L L+ + +N + +L GL + L+ + + ++D SF
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Score = 30.0 bits (68), Expect = 3.0
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 644 LSSLKVLSIAHNQFS--SVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFSN 691
L +LK LS++++ S ++ L L L+ N+I +E +FS
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Score = 29.2 bits (66), Expect = 5.1
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 644 LSSLKVLSIAHNQFSSV---RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L L + + Q + + +LS ++Q+ + +F
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 156 bits (397), Expect = 6e-43
Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 20/239 (8%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ + ++ L S N+ LDLS N L ++ + L L+LS N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
L L TLR L L N + L S+ L ++N + S V
Sbjct: 71 YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI------SRVSCS 117
Query: 264 -LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-LSTLSHLDLA 321
K + +A+N+ + +R ++ L N+ID + A TL HL+L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
+N I V + L TLDLS N L + + + + L +N + + + +
Sbjct: 178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233
Score = 150 bits (380), Expect = 1e-40
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
++ + L + + + ++ LDLS N L +S LAP L +L L N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L L+ L ++ LDL++N + + S++ L A+N S V G
Sbjct: 70 LY--ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQG 121
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSH 346
++ +N+I +L D S + +LDL N I V+ A L L+L +
Sbjct: 122 ---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
NF+ + L+ L L N ++
Sbjct: 179 NFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEF 210
Score = 114 bits (288), Expect = 3e-28
Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 39/318 (12%)
Query: 83 AISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGL 141
AI E + R + T S++ + + L +S L IS
Sbjct: 1 AIHEIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57
Query: 142 SSPLQALGLPNNLLSVVPT-----------------SALAPLAPNLDRLDLSHNQLYKLE 184
+ L+ L L +N+L L P+++ L ++N + ++
Sbjct: 58 TK-LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVS 115
Query: 185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVT 243
+ +G + + L+ NK+ L ++ L L+ N + V+ ++
Sbjct: 116 CSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 244 DLDLSHNLLAGPLGPSTVPR---LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
L+L +N + V + LK L ++ N+ + + +T +S +N+
Sbjct: 173 HLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK 225
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
+ ++E + R L H DL N + N ++ ++ LT
Sbjct: 226 LVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEEC 283
Query: 361 KSLQELRLDDNDISMEPE 378
P
Sbjct: 284 TVPTLGHYGAYCCEDLPA 301
Score = 97.8 bits (244), Expect = 2e-22
Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 9/217 (4%)
Query: 106 NVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP 165
N++ + +G + +++ ++ + D S +Q L L N + V + LA
Sbjct: 110 NISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAA 166
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
+ L+ L+L +N +Y ++ + L LDLS NKL + + + L+
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRN 223
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N+L + AL+ +++ DL N G + +V ++A +
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
T + L L L H H
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317
Score = 43.8 bits (104), Expect = 1e-04
Identities = 3/48 (6%), Positives = 11/48 (22%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ K+ + + + L N + + +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Score = 40.4 bits (95), Expect = 0.001
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
K + +A+N+ + +R ++ L N+ID +
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 37.3 bits (87), Expect = 0.012
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
++K L ++ N S + LA KL L+ N + D
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Score = 36.5 bits (85), Expect = 0.022
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S++ L A+N S V G ++ +N+I +L D
Sbjct: 98 GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGC 142
Score = 34.6 bits (80), Expect = 0.090
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 642 ILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
++ + LK L ++ N+ + + +T +S +N++ ++E
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK 231
Score = 34.2 bits (79), Expect = 0.12
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS+L+ L + +N L + +L +N I +
Sbjct: 79 LSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121
Score = 33.0 bits (76), Expect = 0.25
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
+ + +S+ +N+ + + AL L N
Sbjct: 213 AAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFH 250
Score = 31.5 bits (72), Expect = 0.92
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
+ L++L+++ N L L L +L ++N + L
Sbjct: 57 FTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELL 96
Score = 31.5 bits (72), Expect = 0.97
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+L+ L++ +N V+ KL +L N++ +
Sbjct: 167 SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP 208
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 162 bits (413), Expect = 8e-43
Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 6/272 (2%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAPL 166
+ + L + + + L + + + L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 167 -APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
+++ ++L + + + + +F S L LDL+ L L L L TL+ L L
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSA 310
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQ--FSSVRRG 283
N+ + S+T L + N LG + L +L+ L ++H+ S
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTL 342
L L L SL+ +N+ L+ +F+ L LDLA R+ + + +L L L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430
Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
+LSH+ L ++ L L +LQ L L N
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Score = 160 bits (408), Expect = 4e-42
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 10/265 (3%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L +++ L + G +GLS+ L+ L L N + + + P+L L + N
Sbjct: 280 LQELDLTATHLSELPSG-LVGLST-LKKLVLSANKFENLCQISASNF-PSLTHLSIKGNT 336
Query: 180 LY-KLENTSFKGLSSLNFLDLSYNKLMTL--SQDCLAPLVTLRVLRLQGNRLTVSVVAAL 236
+L + L +L LDLS++ + T L L L+ L L N A
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
+ + LDL+ L S L LKVL+++H+ GL L L+
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 297 HHNQI---DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
N ++ + +S + L L L L+ + ++ + L + +DLSHN L + +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 354 QDLITPLKSLQELRLDDNDISMEPE 378
+ ++ LK + L L N IS+
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILP 540
Score = 157 bits (398), Expect = 8e-41
Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 31/282 (10%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L ++ ++ I + F L L L N L + +AL+ L L +
Sbjct: 62 LDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISS 119
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRS- 241
++ +L L L N + ++ P L+VL Q N + + L+
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179
Query: 242 -VTDLDLSHNLLAG------------------------PLGPSTVPRLSSLKVLSIAHNQ 276
L+L+ N +AG + SL + +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 277 FSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
+ GL + + S++ + + ++F S L LDL + + + L
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLV 298
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
LS L L LS N L Q + SL L + N +E
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Score = 152 bits (385), Expect = 4e-39
Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 9/273 (3%)
Query: 114 FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173
L+ T L ++ ++ I GAF G NLL + + + +L
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI-QSLWLG 233
Query: 174 DLSHNQLYKLENTSFKGLSSLN--FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
+ F+GL ++ ++L + +S + L+ L L L+
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292
Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN-QFSSVRRGALAGLDK 290
+ + L GL ++ L LS N L + SL LSI N + + G L L+
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 291 LTSLSCHHNQIDVLE--DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
L L H+ I+ + + R LS L L+L++N +++ + L LDL+
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 349 LRALT-QDLITPLKSLQELRLDDNDISMEPECI 380
L+ Q L L+ L L + + + E +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
Score = 152 bits (385), Expect = 5e-39
Identities = 45/241 (18%), Positives = 95/241 (39%), Gaps = 9/241 (3%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
L + + L N+L + + + L NL LDL+ Q+Y + +F+ L+ L L
Sbjct: 30 TLPNSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
+ N L+ +++ L+ L+ L ++ L +++ L L N ++ +
Sbjct: 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLP 147
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH--HNQIDVLEDHSFRALSTLSH 317
LKVL +N + + ++ L + T+LS + N I +E +F +
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQS 206
Query: 318 LDLAHNRI--VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK--SLQELRLDDNDI 373
L+ + V G + + +L ++ + L S++ + L +
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266
Query: 374 S 374
Sbjct: 267 F 267
Score = 150 bits (382), Expect = 1e-38
Identities = 54/303 (17%), Positives = 104/303 (34%), Gaps = 32/303 (10%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L LV+++ L +++ A G + L+ L +S + L L+ L L N
Sbjct: 83 LDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNH 140
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------------------------ 215
+ ++ L LD N + LS++ ++ L
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200
Query: 216 -VTLRVLRLQGNRLTVSVVAALQG--LRSVTDLDLSHNLLAG-PLGPSTVPRLSSLKVLS 271
+ L G + + + L+ ++S+ S++ ++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
+ + F ++ L L + L LSTL L L+ N+ +
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQI 319
Query: 332 SLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE 390
S ++ +LT L + N R L + L++L+EL L +DI C N L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379
Query: 391 LIY 393
+
Sbjct: 380 SLN 382
Score = 148 bits (375), Expect = 8e-38
Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 28/268 (10%)
Query: 132 NISDGAFIGLSSPLQALGLPNNLLSVVPTS--ALAPLAPNLDRLDLSHNQLYKLENTSFK 189
+ G L + L+ L L ++ + L L +L L+LS+N+ L+ +FK
Sbjct: 340 ELGTGCLENLEN-LRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFK 397
Query: 190 GLSSLNFLDLSYNKLMTL-SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
L LDL++ +L +Q L L+VL L + L +S GL ++ L+L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 249 HNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
N +++ L L++L ++ SS+ + A L + + HN++
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN----------FLRALTQDL 356
+ L + +L+LA N I + + L LS T++L N FL +++
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM 576
Query: 357 ITP----------LKSLQELRLDDNDIS 374
L+ +RL D +S
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 147 bits (374), Expect = 1e-37
Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 10/246 (4%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N L+ +P + L + + L+ S N L ++NT+F L +L FLDL+ ++ + +D
Sbjct: 21 NLGLNEIPGT----LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L L L N L AL G +++ L ++ + + +L+ L
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLY 135
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH--LDLAHNRIVAVS 329
+ N SS++ +KL L +N I L +L ++ L+L N I +
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLI--TPLKSLQELRLDDNDISMEPECIYVGFNTM 387
+ +L+ + + + ++SL +D D ++ G M
Sbjct: 196 -PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254
Query: 388 DLELIY 393
+E I
Sbjct: 255 SVESIN 260
Score = 122 bits (307), Expect = 4e-29
Identities = 37/200 (18%), Positives = 64/200 (32%), Gaps = 6/200 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256
+ L + + L N L L ++T LDL+ + +
Sbjct: 17 YNCENLGLNEIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-I 72
Query: 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
T L L + N + AL+G L L I ++ TL
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD--DNDIS 374
L L N I ++ L LD +N + L+++ ++ L+ L L+ NDI+
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 375 MEPECIYVGFNTMDLELIYS 394
+ L +
Sbjct: 193 GIEPGAFDSAVFQSLNFGGT 212
Score = 112 bits (283), Expect = 4e-26
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 4/156 (2%)
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
+ + L + L S L+ S N+L + +T RL +L L + Q
Sbjct: 15 KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIY 70
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
+ +L +L N + + + + L HL I ++ L +
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L +L L N + ++ P + L+ L +N I
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166
Score = 59.3 bits (144), Expect = 2e-09
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 10/151 (6%)
Query: 104 LSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSA 162
+ L+ + L LV+S +L +I AF L + + L +N L+ A
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEA 519
Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC-LAPLVTLRVL 221
L+ L L+L+ N + + + LS ++L N L C L
Sbjct: 520 LSHL--KGIYLNLASNHISIILPSLLPILSQQRTINLRQNP---LDCTCSNIYF--LEWY 572
Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
+ +L + + + + LS L
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
Score = 44.6 bits (106), Expect = 9e-05
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+LK L SS+ L L SL N I ++
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Score = 44.2 bits (105), Expect = 1e-04
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +S + L + N +++ + L LT L QI + + +F +
Sbjct: 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79
Score = 42.7 bits (101), Expect = 4e-04
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L + N + AL+G L L I ++ N
Sbjct: 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127
Score = 42.3 bits (100), Expect = 5e-04
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L++L ++ SS+ + A L + + HN++ + S+
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Score = 42.3 bits (100), Expect = 5e-04
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L + Q + +L +L N + + + + S
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103
Score = 42.3 bits (100), Expect = 5e-04
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+L+ L + N SS++ +KL L +N I L S+
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175
Score = 41.2 bits (97), Expect = 0.001
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 644 LSSLKVLSIAHNQFSSV---RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L+ L++ N F + +L L +L L + ++ H+F++
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Score = 40.0 bits (94), Expect = 0.003
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
LS L+ L++++N+ S++ A +L L ++ V + S
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Score = 39.2 bits (92), Expect = 0.005
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S L+ L + S + G L GL L L N+ + L S SN
Sbjct: 277 FSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASN 323
Score = 38.1 bits (89), Expect = 0.009
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++L +A + + L L L+ H+ +D+ + F
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Score = 37.3 bits (87), Expect = 0.017
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L LKVL+++H+ GL L L+ N
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 36.1 bits (84), Expect = 0.035
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 644 LSSLKVLSIAHNQ--FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L +L+ L ++H+ S L L L SL+ +N+ L+ +F
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399
Score = 36.1 bits (84), Expect = 0.036
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH--HNQIDVLEDHSFSN 691
LKVL +N + + ++ L + T+LS + N I +E +F +
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Score = 36.1 bits (84), Expect = 0.040
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFSN 691
LS+LK L ++ N+F ++ + + + LT LS N + L N
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Score = 35.8 bits (83), Expect = 0.049
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L + + ++HN+ +S AL+ L + L+ N I ++
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPI 545
Score = 35.0 bits (81), Expect = 0.079
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
S++ +++ + F ++ L L + L
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298
Score = 33.8 bits (78), Expect = 0.19
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFSN 691
+ SL + + + GL + + S++ + + ++F
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Score = 28.4 bits (64), Expect = 9.6
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 637 LQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
+ L++A N S + L L + +++ N +D
Sbjct: 515 SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 157 bits (399), Expect = 8e-43
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 11/248 (4%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
GL+ +++L L NN ++ + S L NL L L+ N + +E SF L SL LDL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
SYN L LS PL +L L L GN + + L + L + + +
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Query: 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
L+ L+ L I + S +L + ++ L H Q +L + S++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
Query: 319 DLAHNR--------IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
+L + SL + ++ L + L+ + L EL
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSR 286
Query: 371 NDISMEPE 378
N + P+
Sbjct: 287 NQLKSVPD 294
Score = 79.4 bits (196), Expect = 4e-16
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
PS + ++K L +++N+ + + L L +L N I+ +E+ SF +L +L H
Sbjct: 47 PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDND 372
LDL++N + +S + LS+LT L+L N + L + + + L LQ LR+ + D
Sbjct: 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Score = 75.9 bits (187), Expect = 6e-15
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 3/128 (2%)
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
L + + +S+ G + SL +N+I + + +
Sbjct: 17 LSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQ 73
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L L L N I + S + L +L LDLS+N+L L+ PL SL L L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 371 NDISMEPE 378
N E
Sbjct: 134 NPYKTLGE 141
Score = 60.5 bits (147), Expect = 6e-10
Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 9/129 (6%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
+ P + L++ + + + SS ++ L L + L S L+
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS-VECLELRDTDLDTFHFSELSTGE 246
Query: 168 -------PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
+ ++ L+++ +S L L+ S N+L ++ L +L+
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305
Query: 221 LRLQGNRLT 229
+ L N
Sbjct: 306 IWLHTNPWD 314
Score = 47.4 bits (113), Expect = 9e-06
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L+ L I + S +L + ++ L H Q +L +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220
Score = 45.9 bits (109), Expect = 3e-05
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 98 SLLDCTLSNVTVLPGKFLEGVT------LHGLVISSGELKNISDGAFIGLS--SPLQALG 149
S L + +L F++ + L + + +S G L + +
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 150 LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ + L V L L L+ S NQL + + F L+SL + L N
Sbjct: 261 ITDESLFQVM--KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
Score = 41.3 bits (97), Expect = 8e-04
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L ++K L +++N+ + + L L +L N I+ +E+ SFS+
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Score = 41.3 bits (97), Expect = 9e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L SL+ L +++N S++ L LT L+ N L + S
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144
Score = 40.5 bits (95), Expect = 0.001
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+L+ L + N +++ + + L L L +N + L F
Sbjct: 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122
Score = 36.6 bits (85), Expect = 0.023
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 628 NNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 679
+D ++ +S L L + NQ SV G L L + H N
Sbjct: 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 36.3 bits (84), Expect = 0.028
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L++L + + F+ ++R AGL L L + + E S +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Score = 33.9 bits (78), Expect = 0.15
Identities = 5/49 (10%), Positives = 13/49 (26%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
+ ++ L + Q + + + L +D S
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245
Score = 29.7 bits (67), Expect = 3.5
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ + + I V + L + L L NQ+ + D F
Sbjct: 253 KFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDR 299
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 161 bits (410), Expect = 1e-41
Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 24/300 (8%)
Query: 91 LEPDERVSLLDCTLSNVTVLPGKFLEG---VTLHGLVISSGELKNISDGAFIGLSSPLQA 147
L + N+ G ++ L +S G + +++ F L L+
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKV 294
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
L L N ++ + A L NL L+LS+N L +L +++F GL + ++DL N + +
Sbjct: 295 LNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS-S 266
L L+ L L+ N LT + + S+ D+ LS N L T+P+++ +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL------VTLPKINLT 402
Query: 267 LKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAHNR 324
++ ++ N+ ++ L + L L + N+ D + +L L L N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 325 IVAVSGASL-----AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
+ L LS+L L L+HN+L +L + + L +L+ L L+ N +++
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Score = 152 bits (386), Expect = 1e-38
Identities = 71/292 (24%), Positives = 109/292 (37%), Gaps = 26/292 (8%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS--VVPTSALAPLAPNLDRLDLSH 177
L L + S ++ + AF GL L L L LS V+ L L RLDLS
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFH-LFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSK 132
Query: 178 NQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL--VTLRVLRLQGNRLTVSVVA 234
NQ+ L + SF L+SL +D S N++ + + L PL TL L N L V
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192
Query: 235 ALQGL------RSVTDLDLSHNLLAGP-----------LGPSTVPRLSSLKVLSIAHNQF 277
+ LD+S N ++ + +
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252
Query: 278 SSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
+ AGL + + L H + L F L L L+LA+N+I ++ +
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTM 387
L NL L+LS+N L L L + + L N I++ + + +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364
Score = 143 bits (362), Expect = 1e-35
Identities = 64/303 (21%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKN--ISDGAFIGLSSPLQALGLPNNLLS 156
LD S + L +G+ L L + L + + DG F L + L L L N +
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQIR 136
Query: 157 VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLS--SLNFLDLSYNKLMTLSQDCLAP 214
+ +L +D S NQ++ + + L +L+F L+ N L +
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Query: 215 L------VTLRVLRLQGNRLTVSVVAA------------LQGLRSVTDLDLSHNLLAGPL 256
+ L +L + GN TV + L + + +
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD-P 255
Query: 257 GPSTVPRL--SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
+T L SS++ L ++H S+ L L L+ +N+I+ + D +F L
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L L+L++N + + ++ L + +DL N + + L+ LQ L L DN ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 375 MEP 377
Sbjct: 376 TIH 378
Score = 133 bits (337), Expect = 2e-32
Identities = 56/265 (21%), Positives = 95/265 (35%), Gaps = 28/265 (10%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL-MTLSQD 210
L+ VP + +RL LS N + + +SF L L L+L +T+ ++
Sbjct: 13 FCNLTQVP-----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67
Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA-GPLGPSTVPRLSSLKV 269
L LR+L L +++ A QGL + +L L L+ L L +L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 270 LSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALS--TLSHLDLAHNRIV 326
L ++ NQ S+ + L+ L S+ NQI ++ +H L TLS LA N +
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 327 AVSGASLAHLSN------LTTLDLSHNFLRALTQDL------------ITPLKSLQELRL 368
+ N L LD+S N + +
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247
Query: 369 DDNDISMEPECIYVGFNTMDLELIY 393
++I + + G + +
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLD 272
Score = 129 bits (326), Expect = 3e-31
Identities = 55/285 (19%), Positives = 110/285 (38%), Gaps = 30/285 (10%)
Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP-LQALGL-PNNLLSVVPTSALAPLA 167
L F + +L + SS ++ + + L L L N+L S V +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 168 P----NLDRLDLSHNQLY------------KLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
P L+ LD+S N K + S + ++ + Q+
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 212 LAPLV--TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
A L ++R L L + + L+ + L+L++N + + L +L+V
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQV 318
Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
L++++N + GL K+ + N I +++D +F+ L L LDL N +
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT--- 375
Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
++ + ++ + LS N L L + + + + L +N +
Sbjct: 376 --TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLE 414
Score = 116 bits (291), Expect = 6e-27
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 30/284 (10%)
Query: 85 SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
S L+ + ++L ++ + F L L +S L + F GL
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK- 339
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF---------------K 189
+ + L N ++++ L L LDL N L + K
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 190 GLSSLNFLDLSYNKLMTLSQDC-LAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDL 247
+ N + LS N+L L L + L++L L NR + S S+ L L
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 248 SHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
N+L L LS L+VL + HN +S+ G + L L LS + N++ V
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518
Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L + + L LD++ N+++A + +L+ LD++HN
Sbjct: 519 LSHNDL--PANLEILDISRNQLLAP---NPDVFVSLSVLDITHN 557
Score = 116 bits (291), Expect = 7e-27
Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 33/211 (15%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L ++ + L++ L LS+N + T++ L L++L
Sbjct: 9 AFYRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL----------- 53
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
+L + L +L++L + ++ + A GL L
Sbjct: 54 -------------ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100
Query: 293 SLSCHHNQI--DVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFL 349
L + + VL+D FR L L+ LDL+ N+I ++ S L++L ++D S N +
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Query: 350 RALTQDLITPL--KSLQELRLDDNDISMEPE 378
+ + + PL K+L L N +
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Score = 79.1 bits (195), Expect = 2e-15
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 15/234 (6%)
Query: 95 ERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
+ L + L N+ FL V L L+++ + S + L+ L L N
Sbjct: 404 NLIHLSENRLENLD--ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 154 LLSVVPTSALAPLA----PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
+L + + L +L L L+HN L L F L++L L L+ N+L LS
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
+ L L +L + N+L L + D++HN ST +
Sbjct: 522 NDLPAN--LEILDISRNQLLAPNPDVFVSLSVL---DITHNKFICECELSTFINWLNHTN 576
Query: 270 LSIAHN--QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
++IA V + +G+ L SLS + + +L + + L
Sbjct: 577 VTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLT 629
Score = 46.3 bits (110), Expect = 3e-05
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L LKVL++A+N+ + + A GLD L L+ +N + L +F
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Score = 42.1 bits (99), Expect = 6e-04
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L+VL++++N + GL K+ + N I +++D +F
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Score = 41.3 bits (97), Expect = 0.001
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L+VL + HN +S+ G + L L LS + N++ VL +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526
Score = 40.2 bits (94), Expect = 0.003
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
SS++ L ++H S+ L L L+ +N+I+ + D +F
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312
Score = 39.0 bits (91), Expect = 0.005
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L++L + ++ + A L L L ++I L +F
Sbjct: 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95
Score = 39.0 bits (91), Expect = 0.005
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L ++ NQ S+ + L+ L S+ NQI ++ +H
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Score = 39.0 bits (91), Expect = 0.006
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFSN 691
L++ + L ++ N +V + L++L L + ++ +F N
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71
Score = 38.2 bits (89), Expect = 0.010
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFSN 691
L +L++L + ++ + A GL L L + + VL+D F N
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Score = 37.5 bits (87), Expect = 0.018
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 621 QEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQF-----SSVRRGALAGLDKLTSLS 675
Q +N+N T SL+ L + N + + GL L L
Sbjct: 429 QILILNQNRF--SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 676 CHHNQIDVLEDHSFSN 691
+HN ++ L FS+
Sbjct: 487 LNHNYLNSLPPGVFSH 502
Score = 36.7 bits (85), Expect = 0.030
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L + + + N + ++ L+KL +L N +
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 35.6 bits (82), Expect = 0.068
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFSNVIG 694
L+SLK + + NQ V L L L+ S N + + +
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Score = 34.8 bits (80), Expect = 0.098
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++L+ LS+ N+ + + L L L NQ+ F +
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVS 548
Score = 34.0 bits (78), Expect = 0.20
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
+ L++L + N+FSS + L L N + + +
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472
Score = 29.4 bits (66), Expect = 4.7
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
L L+ L + N +++ + + + N++ L + +
Sbjct: 361 LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLT 402
Score = 28.6 bits (64), Expect = 9.4
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 646 SLKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLEDHSF 689
+ ++ ++ N+ ++ L + L L + N+
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 158 bits (401), Expect = 3e-41
Identities = 72/297 (24%), Positives = 106/297 (35%), Gaps = 13/297 (4%)
Query: 87 SLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQ 146
+ GL ++ + KF + + ++ +K + D Q
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQ 310
Query: 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
+L + L PT L P L L L+ N+ + L SL++LDLS N L
Sbjct: 311 SLSIIRCQLKQFPTLDL----PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF 364
Query: 207 LSQDCLAPLVT--LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+ L T LR L L N + A GL + LD H+ L S L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHN 323
L L I++ G GL L +L N D + F + L+ LDL+
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
++ +S L L L++SHN L L L SL L N I +
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Score = 151 bits (384), Expect = 5e-39
Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 13/263 (4%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L I +LK + L L++L L N S+ P +L LDLS N
Sbjct: 309 WQSLSIIRCQLKQFP---TLDLPF-LKSLTLTMNKGSISFKKVALP---SLSYLDLSRNA 361
Query: 180 LYKLENTSFK--GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAAL 236
L S+ G +SL LDLS+N + +S + L L+ L Q + L V+ +A
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLS 295
L + LD+S+ L+SL L +A N F A LT L
Sbjct: 421 LSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
Q++ + F L L L+++HN ++ + + L +L+TLD S N +
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539
Query: 356 LITPLKSLQELRLDDNDISMEPE 378
L KSL L +N ++ E
Sbjct: 540 LQHFPKSLAFFNLTNNSVACICE 562
Score = 146 bits (370), Expect = 4e-37
Identities = 61/255 (23%), Positives = 98/255 (38%), Gaps = 11/255 (4%)
Query: 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
+ +S++ C L L FL+ +TL S + L S L L L N
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI-------SFKKVALPS-LSYLDLSRNA 361
Query: 155 LSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCL 212
LS + + L +L LDLS N + F GL L LD ++ L ++
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 213 APLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSI 272
L L L + + GL S+ L ++ N + ++L L +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
+ Q + G L +L L+ HN + L+ + L +LS LD + NRI G
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 333 LAHLSNLTTLDLSHN 347
+L +L++N
Sbjct: 541 QHFPKSLAFFNLTNN 555
Score = 145 bits (369), Expect = 5e-37
Identities = 47/243 (19%), Positives = 98/243 (40%), Gaps = 13/243 (5%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
+ S + + L N L ++ + + + L LDLS ++ +E+ ++ GL L+ L L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
+ N + + S + L +L L +L + L ++ L+++HN + P+
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 315
L++L + +++N ++ L L + SL N ID ++D +F+ + L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-L 206
Query: 316 SHLDLAHNRIVA-VSGASLAHLSNLTTLDLSHNFLR------ALTQDLITPLKSLQELRL 368
L L N + + L +L+ L L + ++ L +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 369 DDN 371
Sbjct: 267 RLT 269
Score = 135 bits (341), Expect = 2e-33
Identities = 57/291 (19%), Positives = 100/291 (34%), Gaps = 43/291 (14%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L +S E++ I D A+ GL L L L N + + + L +L+ L +
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGL-TSLENLVAVETK 115
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
L LE+ L +L L++++N + + + L L + L N + V LQ
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Query: 239 LR---------------------------SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
LR + +L L N + + + + L+ L V
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235
Query: 272 IAHNQFSSVRR------GALAGLDKLT--SLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
+ +F R + GL +T + + F L+ +S + LA
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
I + + +L + L+ L L+ L L N S
Sbjct: 296 SIKYLE--DVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGS 341
Score = 127 bits (322), Expect = 5e-31
Identities = 53/276 (19%), Positives = 92/276 (33%), Gaps = 21/276 (7%)
Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
L ++ L + L+ L + +N + A NL +DLS+N + + +
Sbjct: 116 LASLESFPIGQLIT-LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Query: 190 GLSSLNF----LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA-ALQGLRSVTD 244
L LD+S N + + + L L L+GN + +++ LQ L +
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHV 233
Query: 245 LDLSHNLLAGP-----LGPSTVPRLSSLKV--LSIAHNQFSSVRRGALAGLDKLTSLSCH 297
L PS + L + + + + S L ++++S
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
I LED L + ++ L L +L L+ N +
Sbjct: 294 GVSIKYLEDVPK--HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISFK--K 346
Query: 358 TPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
L SL L L N +S C Y T L +
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Score = 126 bits (319), Expect = 1e-30
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 10/207 (4%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
+L K+ + SS +DLS+N L L + L+ L L +
Sbjct: 16 YQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
A GL +++L L+ N + P + L+SL+ L + +S+ + L L
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131
Query: 293 SLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT----TLDLSHN 347
L+ HN I + F L+ L H+DL++N I ++ L L +LD+S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ + + L EL L N S
Sbjct: 192 PIDFIQDQAFQGI-KLHELTLRGNFNS 217
Score = 123 bits (310), Expect = 2e-29
Identities = 57/276 (20%), Positives = 91/276 (32%), Gaps = 22/276 (7%)
Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178
L +S + I D AF G+ L L L N S L L
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 179 ------QLYKLENTSFKGLSSLNF--LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
L E + +GL + L+Y + L + + L G +
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
+ + L + L L LK L++ N+ S L
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNKGSIS--FKKVALPS 351
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLS--HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
L+ L N + S+ L T S HLDL+ N + +S L L LD H+
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHST 410
Query: 349 LRALT-QDLITPLKSLQELRLDDNDISMEPECIYVG 383
L+ +T L+ L L + + ++ + I++G
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Score = 93.2 bits (232), Expect = 5e-20
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 1/142 (0%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
FL L L IS K DG F+GL+S L L + N S + NL
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
LDLS QL ++ F L L L++S+N L+ L L +L L NR+
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 231 SVVAALQGLRSVTDLDLSHNLL 252
S +S+ +L++N +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557
Score = 76.2 bits (188), Expect = 1e-14
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
P + + + S V + ++ N + +L+ +SF S
Sbjct: 1 PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSE 57
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L LDL+ I + + L +L+ L L+ N +++ + + L SL+ L + ++
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 375 MEPE 378
Sbjct: 118 SLES 121
Score = 45.0 bits (107), Expect = 8e-05
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L L + N S G+ +GL L +L ++ LE
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126
Score = 43.9 bits (104), Expect = 2e-04
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S L+ L ++ + ++ A GL L++L N I SFS
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102
Score = 43.9 bits (104), Expect = 2e-04
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ SS K + ++ N ++ + + +L L +I+ +ED ++
Sbjct: 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Score = 43.1 bits (102), Expect = 3e-04
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L++L+++HN + L L++L C N+I+ +
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Score = 40.8 bits (96), Expect = 0.001
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++L L ++ Q + G L +L L+ HN + L+ ++
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Score = 38.9 bits (91), Expect = 0.005
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFSN 691
L++L + +++N ++ L L + SL N ID ++D +F
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203
Score = 38.1 bits (89), Expect = 0.010
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+SL L +A N F A LT L Q++ + F
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Score = 37.7 bits (88), Expect = 0.012
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +LK L++AHN S + A + L L + +N I + +
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 37.7 bits (88), Expect = 0.014
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L H+ V A L+KL L + + D F
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Score = 37.3 bits (87), Expect = 0.016
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L+SL+ L + +S+ + L L L+ HN I + ++
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Score = 35.8 bits (83), Expect = 0.051
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFSN 691
L L L I++ G GL L +L N D + F+N
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471
Score = 33.9 bits (78), Expect = 0.21
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L LK L++ N+ S L L+ L N + S+S+
Sbjct: 327 LPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSD 372
Score = 32.3 bits (74), Expect = 0.61
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 646 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++ + + S L ++++S I LED
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Score = 32.3 bits (74), Expect = 0.62
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L SL L + N+ + + L + +N +
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 30.8 bits (70), Expect = 1.9
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+++ +S+A + + K SLS Q+
Sbjct: 284 LANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTLDLPF 329
Score = 30.0 bits (68), Expect = 3.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDH 687
L SL L ++ N S + + G + L L N ++ +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 155 bits (393), Expect = 7e-41
Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 20/239 (8%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ + ++ L S N+ LDLS N L ++ + L L+LS N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-- 262
L L TLR L L N + L S+ L ++N + S V
Sbjct: 71 YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI------SRVSCS 117
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-LSTLSHLDLA 321
R K + +A+N+ + +R ++ L N+ID + A TL HL+L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
+N I V + L TLDLS N L + + + + L +N + + + +
Sbjct: 178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233
Score = 149 bits (379), Expect = 4e-39
Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 14/219 (6%)
Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222
+ ++ + L + + + ++ LDLS N L +S LAP L +L
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
L N L L+ L ++ LDL++N + + S++ L A+N S V
Sbjct: 65 LSSNVLY--ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSC 116
Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTT 341
G ++ +N+I +L D S + +LDL N I V+ A L
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
L+L +NF+ + + L+ L L N ++
Sbjct: 174 LNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPEF 210
Score = 127 bits (320), Expect = 3e-31
Identities = 39/274 (14%), Positives = 89/274 (32%), Gaps = 15/274 (5%)
Query: 106 NVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP 165
N++ + +G + +++ ++ + D S +Q L L N + V + LA
Sbjct: 110 NISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAA 166
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
+ L+ L+L +N +Y ++ + L LDLS NKL + + + L+
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRN 223
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N+L + AL+ +++ DL N + ++ ++ +
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNE 280
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAHLSNLT 340
T + L L + L + + + +
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE-CERENQARQR 339
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
+D R + + ++ L +
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
Score = 119 bits (300), Expect = 1e-28
Identities = 35/269 (13%), Positives = 83/269 (30%), Gaps = 18/269 (6%)
Query: 116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175
G ++ L ++ + +S G + + L NN ++++ + LDL
Sbjct: 97 VGPSIETLHAANNNISRVSCSRGQGK----KNIYLANNKITMLRDLDEGCR-SRVQYLDL 151
Query: 176 SHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA 234
N++ + +L L+L YN + + L+ L L N+L +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLA-FMGP 208
Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTS 293
Q VT + L +N L + +L+ + N F R + ++ +
Sbjct: 209 EFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
++ + L + + + + L L + + +
Sbjct: 267 VAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324
Query: 354 QDLITP----LKSLQELRLDDNDISMEPE 378
+ + +E+ +
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVID 353
Score = 79.5 bits (196), Expect = 9e-16
Identities = 32/260 (12%), Positives = 75/260 (28%), Gaps = 12/260 (4%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L +SS +L + F + + + L NN L ++ AL NL+ DL N
Sbjct: 193 LKTLDLSSNKLAFMGP-EFQSAAG-VTWISLRNNKLVLIE-KALRFS-QNLEHFDLRGNG 248
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ F + ++ + L+ + L
Sbjct: 249 FHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307
Query: 240 RSVTDLDLSHNLLAG---PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
++ + + G + + + Q+ +V +L
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS--LAHLSNLTTLDLSHNFLRALTQ 354
+D + RA + L + + A+ + L L + + + Q
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427
Query: 355 DLITPLKSLQELRLDDNDIS 374
++++ + + +
Sbjct: 428 --SVQNNAIRDWDMYQHKET 445
Score = 43.7 bits (103), Expect = 2e-04
Identities = 3/49 (6%), Positives = 11/49 (22%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ K+ + + + L N + + +
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56
Score = 41.0 bits (96), Expect = 0.001
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
K + +A+N+ + +R ++ L N+ID +
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 37.9 bits (88), Expect = 0.011
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 6/159 (3%)
Query: 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
+ +LL S L + + + + + D + + L
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA-KITLEQKKKA 371
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC-LA 213
L ++ A LD +L++ + + S L L + + +
Sbjct: 372 LDEQVSNGRRAHA-ELDGTLQQAVGQIELQH-ATEEQSPLQLLRAIVKRYEEMYVEQQSV 429
Query: 214 PLVTLRVLRLQGNRLT--VSVVAALQGLRSVTDLDLSHN 250
+R + ++ T A L+ L DL L+
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468
Score = 36.7 bits (85), Expect = 0.021
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
++K L ++ N S + LA KL L+ N + D
Sbjct: 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Score = 36.4 bits (84), Expect = 0.032
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S++ L A+N S V G ++ +N+I +L D
Sbjct: 98 GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGC 142
Score = 34.4 bits (79), Expect = 0.13
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 642 ILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
++ + LK L ++ N+ + + +T +S +N++ ++E
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK 231
Score = 34.4 bits (79), Expect = 0.13
Identities = 5/56 (8%), Positives = 15/56 (26%)
Query: 636 KLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+L+ + + + Q+ +V +L +D +
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382
Score = 34.1 bits (78), Expect = 0.18
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS+L+ L + +N L + +L +N I +
Sbjct: 79 LSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121
Score = 30.6 bits (69), Expect = 1.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
+ L++L+++ N L L L +L ++N + L
Sbjct: 57 FTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQEL 95
Score = 30.2 bits (68), Expect = 2.3
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+L+ L++ +N V+ KL +L N++ +
Sbjct: 167 SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP 208
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 150 bits (381), Expect = 9e-39
Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 13/265 (4%)
Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN 169
+ F + + S ++ + D ++ + Q L L N PT L +
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKL----KS 326
Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL--MTLSQDCLAPLVTLRVLRLQGNR 227
L RL + N+ S L SL FLDLS N L +L+ L L N
Sbjct: 327 LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+ ++ + GL + LD H+ L S L +L L I+H G G
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 288 LDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
L L L N + F L L+ LDL+ ++ +S + LS+L L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 347 NFLRALTQDLITPLKSLQELRLDDN 371
N L+++ + L SLQ++ L N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 146 bits (370), Expect = 2e-37
Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 13/260 (5%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
L + L L N L + + + P L LDLS ++ +E+ +++ LS L+ L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
+ N + +L+ + L +L+ L L + L+++ +L+++HNL+ P
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 315
L++L+ L ++ N+ S+ L L ++ SL N ++ ++ +F+ + L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202
Query: 316 SHLDLAHNRI-VAVSGASLAHLSNLTTLDL------SHNFLRALTQDLITPLKSLQELRL 368
L L +N + V + L+ L L + L + + L +L
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 369 DDNDISMEPECIYVGFNTMD 388
+ + I FN +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLT 282
Score = 134 bits (338), Expect = 3e-33
Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 7/269 (2%)
Query: 60 KNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDC-TLSNVTVLPGKFLEGV 118
D D+ C N S +S ++ ++ L N L+
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA-PNLDRLDLSH 177
+L L +S + N + + L S L+ L L N LS + + +L LDLS
Sbjct: 326 SLKRLTFTSNKGGNA--FSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAAL 236
N + + +++F GL L LD ++ L +S L L L + V+
Sbjct: 383 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
GL S+ L ++ N P L +L L ++ Q + A L L L+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
NQ+ + D F L++L + L N
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 128 bits (323), Expect = 3e-31
Identities = 73/327 (22%), Positives = 112/327 (34%), Gaps = 22/327 (6%)
Query: 70 HTLRCTANKSDLYAISESLRGLEPDERVSLLDCTL---SNVTVLPGKFLEG---VTLHGL 123
H L N L + ++GL E L+ N+ LEG +T+
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 124 VISSGEL-KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
++ + + F L++ + + L + + V + +L+ ++ Q
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-- 319
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV--AALQGLR 240
L SL L + NK L +L L L N L+ + G
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHN 299
S+ LDLS N + S L L+ L H+ + L L L H
Sbjct: 374 SLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVA-VSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
V + F LS+L L +A N L NLT LDLS L L+
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 359 PLKSLQELRLDDNDISMEPECIYVGFN 385
L SLQ L + N + P+ I+
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLT 518
Score = 121 bits (305), Expect = 5e-29
Identities = 69/307 (22%), Positives = 117/307 (38%), Gaps = 38/307 (12%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L+++ +++++ GAF GLSS LQ L L+ + + L L L+++HN
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHL-KTLKELNVAHNL 135
Query: 180 LYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV----LRLQGNRLTVSVVA 234
+ + F L++L LDLS NK+ ++ L L + + L L N +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA------HNQFSSVRRGALAGL 288
A + + + L L +N + + + + L+ L+V + + AL GL
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 289 DKLTSLSCHHNQIDVLED---HSFRALSTLSHLDLAHNRIVAVSGASLAH---------- 335
LT +D D F L+ +S L I V S
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 336 ---------LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNT 386
L +L L + N ++ L SL+ L L N +S + C F T
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 387 MDLELIY 393
L+ +
Sbjct: 373 TSLKYLD 379
Score = 93.2 bits (232), Expect = 5e-20
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 6/177 (3%)
Query: 104 LSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP-TSA 162
LS +L L +S + +S F+GL L+ L ++ L + S
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ-LEHLDFQHSNLKQMSEFSV 416
Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVL 221
L NL LD+SH N F GLSSL L ++ N D L L L
Sbjct: 417 FLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
L +L A L S+ L+++ N L + RL+SL+ + + N +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 531
Score = 42.8 bits (101), Expect = 3e-04
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L S K L ++ N + + +L L +I +ED ++ +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Score = 42.4 bits (100), Expect = 5e-04
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+VL ++ + ++ GA L L++L N I L +FS
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Score = 42.4 bits (100), Expect = 5e-04
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L L + N S+ GA +GL L L + LE+ +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Score = 41.6 bits (98), Expect = 9e-04
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L ++ Q + A L L L+ NQ+ + D F
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Score = 38.9 bits (91), Expect = 0.005
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFSN 691
L++L+ L ++ N+ S+ L L ++ SL N ++ ++ +F
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 38.2 bits (89), Expect = 0.010
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFSN 691
L +L L I+H G GL L L N + F+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Score = 37.0 bits (86), Expect = 0.019
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LSSL+VL +A N F + L LT L Q++ L +F++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Score = 37.0 bits (86), Expect = 0.021
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
LSSL+VL++A NQ SV G L L + H N D
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 36.6 bits (85), Expect = 0.029
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L H+ + L L L H V + F+
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Score = 36.2 bits (84), Expect = 0.038
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
LSSL+ L +S+ + L L L+ HN I + +
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Score = 31.6 bits (72), Expect = 0.98
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQ--FSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L SL+ L ++ N F + G L L N + +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Score = 29.7 bits (67), Expect = 3.5
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 638 QATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
Q T+ L SLK L+ N+ + + L L L N + S S
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQS 368
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 149 bits (379), Expect = 1e-38
Identities = 51/252 (20%), Positives = 105/252 (41%), Gaps = 18/252 (7%)
Query: 125 ISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE 184
+ E +S+ + + ++ L +P L ++ + L + R+ + +++++ +
Sbjct: 269 FNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVFLVP 326
Query: 185 NTSFKGLSSLNFLDLSYNKLMTL---SQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGL 239
+ + L SL FLDLS N ++ + C +L+ L L N L L L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
+++T LD+S N P + ++ L+++ V+ L L +N
Sbjct: 387 KNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNN 441
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
+D L L L ++ N++ + A + L + +S N L+++ +
Sbjct: 442 NLDSFSLF----LPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDR 495
Query: 360 LKSLQELRLDDN 371
L SLQ++ L N
Sbjct: 496 LTSLQKIWLHTN 507
Score = 148 bits (375), Expect = 4e-38
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ + +P+ L + LDLS N++ + + + ++L L L +++ T+ D
Sbjct: 14 SRSFTSIPSG----LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L +L L L N L+ + L S+ L+L N S P L++L+ L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 272 IAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
I + FS +RR AGL L L + + S +++ + HL L + +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
LS++ L+L L + + ++ S
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Score = 141 bits (356), Expect = 1e-35
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 2/238 (0%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
GL++ +++L L N ++ + L NL L L +++ +E +F L SL LDL
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
S N L +LS PL +L+ L L GN + V + L ++ L + + +
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
L+SL L I + + +L + + L+ H ++ L + LS++ +L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201
Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
+L + + L + + LT + L L L+ +++ +
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Score = 138 bits (349), Expect = 1e-34
Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 21/287 (7%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH-N 178
L L +S L ++S F LSS L+ L L N + ++L P NL L + +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
++ F GL+SLN L++ L L + + L L + +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH- 297
L SV L+L LA S +P + + S + + L KL
Sbjct: 195 LSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 298 -----------------HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
++ DV+ + T+ L + + + L +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTM 387
+ + ++ + + LKSL+ L L +N + E
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360
Score = 124 bits (312), Expect = 6e-30
Identities = 42/289 (14%), Positives = 90/289 (31%), Gaps = 23/289 (7%)
Query: 108 TVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGL-PNNLLSVVPTSALAP 165
+ L + ++ L L + + + + + LQ L + S + A
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L +L+ L++ L ++ S K + ++ L L ++ L + L ++R L L+
Sbjct: 147 L-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS-----------------TVPRLSSLK 268
L + L + + + S +
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
+ ++ V + L + + L + + + ++++ V
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325
Query: 329 SGASLAHLSNLTTLDLSHNFLRAL---TQDLITPLKSLQELRLDDNDIS 374
+ HL +L LDLS N + SLQ L L N +
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Score = 119 bits (299), Expect = 2e-28
Identities = 56/315 (17%), Positives = 107/315 (33%), Gaps = 30/315 (9%)
Query: 85 SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
S+SL+ + ++L + + + L ++ L + L
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILS--SVRYLELRDTNLARFQFSPLPVDEVS 222
Query: 145 LQALGLPNNLLSVVPTS-----ALAPLAPNLDRLDLSHNQLYKL-----------ENTSF 188
L + S L L ++ L L
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
++ L + L + L ++ + ++ +++ + + Q L+S+ LDLS
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342
Query: 249 HNLLAGPLGPSTVP--RLSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVL 304
NL+ ++ SL+ L ++ N S+++ L L LTSL N +
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
D S + + L+L+ I V L LD+S+N L + + L LQ
Sbjct: 403 PD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQ 454
Query: 365 ELRLDDNDISMEPEC 379
EL + N + P+
Sbjct: 455 ELYISRNKLKTLPDA 469
Score = 114 bits (288), Expect = 5e-27
Identities = 47/306 (15%), Positives = 101/306 (33%), Gaps = 28/306 (9%)
Query: 108 TVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
+ + G+T L+ L I + L+N + + + L L + + + L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSESAFLLEIFADIL 195
Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
++ L+L L + + + + + + L+ + L+ L L+ +
Sbjct: 196 -SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 227 RLTVSVVAALQ------------------GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268
+ ++ L + L + L +K
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVK 313
Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI---DVLEDHSFRALSTLSHLDLAHNRI 325
+++ +++ V L L L N + + A +L L L+ N +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 326 VAVSGAS--LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
++ L L NLT+LD+S N + D + ++ L L I + CI
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432
Query: 384 FNTMDL 389
+D+
Sbjct: 433 LEVLDV 438
Score = 113 bits (285), Expect = 1e-26
Identities = 60/281 (21%), Positives = 98/281 (34%), Gaps = 51/281 (18%)
Query: 84 ISESLRGLEPDERVSLLDCTLSNVTVLP---------GKFLEGVTLHGLVISSGELKNIS 134
+ + LR + V DCTL+ + +E VT+ L I L
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 135 DGAFIGLSSPLQALGLPNNLLSVVPTSALAPL--------------------------AP 168
+ L ++ + + N+ + +VP S L P
Sbjct: 303 STVYSLLEK-VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361
Query: 169 NLDRLDLSHNQLYKLENTS--FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
+L L LS N L ++ T L +L LD+S N + C +R L L
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW-PEKMRFLNLSST 420
Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGAL 285
+ V Q L LD+S+N L + L L+ L I+ N+ ++ +L
Sbjct: 421 GIRVVKTCIPQTL---EVLDVSNNNL------DSFSLFLPRLQELYISRNKLKTLPDASL 471
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
L + NQ+ + D F L++L + L N
Sbjct: 472 --FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 80.9 bits (200), Expect = 4e-16
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
+ V F+S+ G A + SL N+I + RA + L L L +R
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
I + G + L +L LDLS N L +L+ PL SL+ L L N
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Score = 42.8 bits (101), Expect = 4e-04
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +++K L ++ N+ + + G L L L ++I+ +E +F +
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Score = 41.2 bits (97), Expect = 0.001
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++L+VL + ++ +++ A L L L N + L F
Sbjct: 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96
Score = 39.7 bits (93), Expect = 0.003
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+SL L I + + +L + + L+ H ++ L +
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Score = 38.9 bits (91), Expect = 0.006
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L SL+ L ++ N SS+ L L L+ N L S
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Score = 37.4 bits (87), Expect = 0.015
Identities = 4/48 (8%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+++ L I + L+K+ ++ ++++ ++ +
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332
Score = 36.6 bits (85), Expect = 0.025
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 636 KLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L + ++ L L+ L I+ N+ ++ +L L + NQ+ + D F
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDR 495
Score = 36.2 bits (84), Expect = 0.035
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L +L L I+ N F + +K+ L+ I V++ +
Sbjct: 386 LKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIPQTL 433
Score = 35.9 bits (83), Expect = 0.047
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 624 DINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQI 681
D++ N Y+K A SL+ L ++ N S+++ L L LTSL N
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399
Query: 682 DVLEDH 687
+ D
Sbjct: 400 HPMPDS 405
Score = 34.7 bits (80), Expect = 0.10
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L L V+ I+ NQ SV G L L + H N D
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 34.3 bits (79), Expect = 0.15
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
LL +K +++ +++ V L L L N +
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Score = 32.8 bits (75), Expect = 0.41
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 687
++ L+++ V+ L L +N +D
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFSLF 449
Score = 30.8 bits (70), Expect = 1.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ +L+VL +++N S L +L L N++ L D S
Sbjct: 429 IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASLFP 473
Score = 30.8 bits (70), Expect = 1.7
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 644 LSSLKVLSIAHNQFSSVR---RGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
L SL+ L ++ N L +L N + ++
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382
Score = 30.1 bits (68), Expect = 2.5
Identities = 3/48 (6%), Positives = 14/48 (29%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ + L++ ++ + + L + L + +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 148 bits (376), Expect = 5e-38
Identities = 68/262 (25%), Positives = 101/262 (38%), Gaps = 13/262 (4%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
+ + S ++ + D ++ + Q L L N PT L +L RL + N+
Sbjct: 284 VSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNK 336
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQ--DCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
S L SL FLDLS N L +L+ L L N + ++ +
Sbjct: 337 GGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
GL + LD H+ L S L +L L I+H G GL L L
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 298 HNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
N + F L L+ LDL+ ++ +S + LS+L L++SHN +L
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 357 ITPLKSLQELRLDDNDISMEPE 378
L SLQ L N I +
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKK 535
Score = 143 bits (363), Expect = 3e-36
Identities = 53/243 (21%), Positives = 109/243 (44%), Gaps = 10/243 (4%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
L + L L N L + + + P L LDLS ++ +E+ +++ LS L+ L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
+ N + +L+ + L +L+ L L + L+++ +L+++HNL+ P
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 315
L++L+ L ++ N+ S+ L L ++ SL N ++ ++ +F+ + L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202
Query: 316 SHLDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLR---ALTQDLITPLKSLQELRLDDN 371
L L +N + V + L+ L L R L + + L+ L L +++
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 372 DIS 374
++
Sbjct: 263 RLA 265
Score = 138 bits (350), Expect = 1e-34
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 5/221 (2%)
Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSF 188
K + + + L S L+ L L N LS + + +L LDLS N + + + +F
Sbjct: 335 NKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NF 392
Query: 189 KGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
GL L LD ++ L +S L L L + V+ GL S+ L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 307
+ N P L +L L ++ Q + A L L L+ HN L+
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 308 SFRALSTLSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
++ L++L LD + N I+ L H S+L L+L+ N
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 127 bits (320), Expect = 7e-31
Identities = 64/314 (20%), Positives = 99/314 (31%), Gaps = 20/314 (6%)
Query: 77 NKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG------KFLEGVTLHGLVISSGEL 130
N L + ++GL E L+ N L + L +T+ ++ +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
+ + + L + + V + L+L + + + K
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF---GWQHLELVNCKFGQFPTLKLKS 326
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV--AALQGLRSVTDLDLS 248
L L F + L +L L L N L+ + G S+ LDLS
Sbjct: 327 LKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 249 HNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDH 307
N + S L L+ L H+ + L L L H V +
Sbjct: 382 FNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 308 SFRALSTLSHLDLAHNRIV-AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
F LS+L L +A N L NLT LDLS L L+ L SLQ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 367 RLDDNDISMEPECI 380
+ N+
Sbjct: 500 NMSHNNFFSLDTFP 513
Score = 126 bits (319), Expect = 1e-30
Identities = 68/307 (22%), Positives = 117/307 (38%), Gaps = 38/307 (12%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L+++ +++++ GAF GLSS LQ L L+ + + L L L+++HN
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHL-KTLKELNVAHNL 135
Query: 180 LYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV----LRLQGNRLTVSVVA 234
+ + F L++L LDLS NK+ ++ L L + + L L N +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR------GALAGL 288
A + +R + L L +N + + + + L+ L+V + +F + AL GL
Sbjct: 196 AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 289 DKLTSLSCHHNQIDVLED---HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
LT +D D F L+ +S L I V ++ L+L
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELV 312
Query: 346 HNFLRALTQDL-------------------ITPLKSLQELRLDDNDISMEPECIYVGFNT 386
+ L SL+ L L N +S + C F T
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 387 MDLELIY 393
L+ +
Sbjct: 373 TSLKYLD 379
Score = 73.1 bits (180), Expect = 1e-13
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
+L N + L +SF + L LDL+ I + + LS+L+TL L+ N ++
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPE 378
+L + L SLQ+L + +++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLEN 117
Score = 41.2 bits (97), Expect = 0.001
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L S K L ++ N + + +L L +I +ED ++ +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Score = 40.8 bits (96), Expect = 0.001
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L L + N S+ GA +GL L L + LE+ +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Score = 40.8 bits (96), Expect = 0.001
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+VL ++ + ++ GA L L++L N I L +FS
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Score = 39.6 bits (93), Expect = 0.003
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
+ LDLS N LR L LQ L L +I +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Score = 39.6 bits (93), Expect = 0.003
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
LSSL+VL+++HN F S+ L+ L L N I + +
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Score = 38.9 bits (91), Expect = 0.005
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L L ++ Q + A L L L+ HN L+ +
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Score = 36.5 bits (85), Expect = 0.027
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +LK L++AHN S + + L L L N+I +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Score = 36.2 bits (84), Expect = 0.039
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L +L L I+H G GL L L N
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 35.4 bits (82), Expect = 0.072
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE-DHSFSN 691
LSSL+ L +S+ + L L L+ HN I + FSN
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Score = 35.0 bits (81), Expect = 0.083
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFSN 691
L++L+ L ++ N+ S+ L L ++ SL N ++ ++ +F
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 35.0 bits (81), Expect = 0.088
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LSSL+VL +A N F + L LT L Q++ L +F++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Score = 34.6 bits (80), Expect = 0.11
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L H+ + L L L H V + F+
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Score = 31.5 bits (72), Expect = 0.93
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
+SLK L ++ N ++ GL++L L H+ + + + S
Sbjct: 372 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 136 bits (345), Expect = 3e-36
Identities = 59/209 (28%), Positives = 87/209 (41%), Gaps = 7/209 (3%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
+ LDLS N L L + SF L LDLS ++ T+ L L L L GN
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR-GALA 286
+ + A GL S+ L LA L + L +LK L++AHN S + +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTL----SHLDLAHNRIVAVSGASLAHLSNLTTL 342
L L L N+I + R L + LDL+ N + + + + L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKEL 205
Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDN 371
L N L+++ + L SLQ++ L N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 105 bits (264), Expect = 2e-25
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
F L L +S E++ I DGA+ LS L L L N + + A + L +L
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGL-SSL 102
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL-SQDCLAPLVTLRVLRLQGNRLT 229
+L L LEN L +L L++++N + + + + L L L L N++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLG--PSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
L+ L + L+LS +L P+ + LK L++ NQ SV G
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222
Query: 288 LDKLTSLSCHHNQID 302
L L + H N D
Sbjct: 223 LTSLQKIWLHTNPWD 237
Score = 87.7 bits (218), Expect = 2e-19
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P +P S K L ++ N + + +L L +I +ED ++++LS LS
Sbjct: 23 PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L L N I +++ + + LS+L L L +L I LK+L+EL + N I
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Score = 86.2 bits (214), Expect = 9e-19
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S +LDLS N L LG + L+VL ++ + ++ GA L L++L N
Sbjct: 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITP 359
I L +F LS+L L + ++ + HL L L+++HN +++ + +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 360 LKSLQELRLDDNDISMEPE 378
L +L+ L L N I
Sbjct: 148 LTNLEHLDLSSNKIQSIYC 166
Score = 51.9 bits (125), Expect = 2e-07
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSS---PLQALGLPNNLLSVVPTSALAPL 166
LP F L L +SS ++++I L +L L N ++ + A +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
L L L NQL + + F L+SL + L N
Sbjct: 201 --RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 49.2 bits (118), Expect = 2e-06
Identities = 17/71 (23%), Positives = 26/71 (36%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
+ +LDL+ N + + S L LDLS ++ + L L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 373 ISMEPECIYVG 383
I + G
Sbjct: 88 IQSLALGAFSG 98
Score = 40.0 bits (94), Expect = 0.001
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFSN 691
L++L+ L ++ N+ S+ L L ++ SL N ++ ++ +F
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 39.6 bits (93), Expect = 0.002
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L L + N S+ GA +GL L L + LE+ +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Score = 38.8 bits (91), Expect = 0.003
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S K L ++ N + + +L L +I +ED ++ +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Score = 37.6 bits (88), Expect = 0.008
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +LK L++AHN S + + L L L N+I +
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Score = 35.7 bits (83), Expect = 0.034
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+VL ++ + ++ GA L L++L N I L +FS
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Score = 35.7 bits (83), Expect = 0.039
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FSN 691
LSSL+ L +S+ + L L L+ HN I + FSN
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Score = 33.4 bits (77), Expect = 0.18
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 646 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
LK L++ NQ SV G L L + H N D
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 641 TILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L ++ N + ++ GA + +L L+ NQ+ + D F
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDR 222
Score = 29.6 bits (67), Expect = 3.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
LD +L+ + + + + L L + + +LK++ DG F L+S LQ + L N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTN 234
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 136 bits (343), Expect = 2e-34
Identities = 65/299 (21%), Positives = 105/299 (35%), Gaps = 27/299 (9%)
Query: 98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNIS-DGAFIGLSSPLQALGLPNNLLS 156
+L C L + F +L LV+ +K I F+ + L L N +
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVK 167
Query: 157 VVPTSALAPL-APNLDRLDLSHNQLYKLENT--------SFKGLSSLNFLDLSYNKLMTL 207
+ L + L LS L + + +S+ LDLS N
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227
Query: 208 SQDCLAPLVTLRVLR-------------LQGNRLTVSVVAALQGLR--SVTDLDLSHNLL 252
+ ++ +GL V DLS + +
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287
Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
L S + L+ L++A N+ + + A GL L L+ N + ++ F L
Sbjct: 288 FA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L LDL++N I A+ S L NL L L N L+++ + L SLQ++ L N
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 135 bits (342), Expect = 3e-34
Identities = 68/345 (19%), Positives = 133/345 (38%), Gaps = 54/345 (15%)
Query: 85 SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
S L+ + + + T + + F +L L + + + GAF GL++
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN- 104
Query: 145 LQALGLPNNLL--SVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSY 201
L+ L L L +V+ + PL +L+ L L N + K++ + F + + LDL++
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163
Query: 202 NKLMTLSQDCLAP----------------------------------LVTLRVLRLQGNR 227
NK+ ++ ++ L ++ L L GN
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 228 LTVSVVAALQGLRSVTDL-------------DLSHNLLAG-PLGPSTVPRLSSLKVLSIA 273
S+ + T + H S +K ++
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
++ ++ + + L L+ N+I+ ++D++F L+ L L+L+ N + ++
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343
Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
+L L LDLS+N +RAL L +L+EL LD N + P+
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Score = 131 bits (331), Expect = 7e-33
Identities = 65/298 (21%), Positives = 103/298 (34%), Gaps = 30/298 (10%)
Query: 111 PGKFLEGVTLHGLVISSGELK-NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN 169
F L L + I + F GLSS L L L N + T A L N
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-LIILKLDYNQFLQLETGAFNGL-AN 104
Query: 170 LDRLDLSHNQL--YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL-APLVTLRVLRLQGN 226
L+ L L+ L L FK L+SL L L N + + + VL L N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 227 RLTVSVVAALQGLRS--VTDLDLSHNLL-------AGPLGPSTVPRLSSLKVLSIAHNQF 277
++ L + T L LS L G + +S+ L ++ N F
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 278 SSVRRGALAGLDKLTSL-------------SCHHNQIDVLEDHSFRAL--STLSHLDLAH 322
T + S H ++ +F+ L S + DL+
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
++I A+ + +H ++L L L+ N + + + L L +L L N + +
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342
Score = 121 bits (306), Expect = 1e-29
Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 31/262 (11%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT-LSQDCLA 213
L VP L +++ +DLS N + +L TSF L L FL + + +
Sbjct: 22 LHQVP-----ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV-PRLSSLKVLSI 272
L +L +L+L N+ A GL ++ L L+ L G + L+SL++L +
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 273 AHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLDLAHNRIVAVS 329
N ++ + + L N++ + + + L L+ + ++
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 330 GASLA--------HLSNLTTLDLSHNFLRALTQDLITPLKSLQELR-------------L 368
L +++TTLDLS N + + +++
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 369 DDNDISMEPECIYVGFNTMDLE 390
+ + G ++
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVK 278
Score = 105 bits (263), Expect = 4e-24
Identities = 44/208 (21%), Positives = 72/208 (34%), Gaps = 14/208 (6%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQ------------ALGLPNNLL 155
G + ++ L +S K F + + +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 156 SVVPTSALAPL-APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L A + DLS ++++ L + F + L L L+ N++ + +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L L L N L + L + LDLS+N + LG + L +LK L++
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQID 302
NQ SV G L L + H N D
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 92.5 bits (230), Expect = 6e-20
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 5/166 (3%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHN 299
V +DLS N +A L ++ RL L+ L + +R GL L L +N
Sbjct: 31 HVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRI--VAVSGASLAHLSNLTTLDLSHNFLRALT-QDL 356
Q LE +F L+ L L L + +SG L++L L L N ++ +
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 357 ITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL 402
++ L L N + E + F L+ +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Score = 43.6 bits (103), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L+ L++A N+ + + A GL L L+ N + ++ F N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345
Score = 41.3 bits (97), Expect = 8e-04
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L L+++ N S+ LDKL L +N I L D SF
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Score = 40.9 bits (96), Expect = 0.001
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+VL +++N ++ + GL L L+ NQ+ + D F
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Score = 40.1 bits (94), Expect = 0.002
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S +K ++ ++ ++ + + L L+ N+I+ ++D++F
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFSN 691
LSSL +L + +NQF + GA GL L L+ +D VL + F
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Score = 39.0 bits (91), Expect = 0.005
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+SL++L + N ++ + + L N++ + + N
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176
Score = 37.0 bits (86), Expect = 0.017
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L + +R GL L L +NQ LE +F+
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101
Score = 36.3 bits (84), Expect = 0.032
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L +LK L++ NQ SV G L L + H N D
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 34.3 bits (79), Expect = 0.13
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L++L+VL++ + L L L N I ++ SF
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 32.8 bits (75), Expect = 0.42
Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLEDHSFSN 691
L + + + ++ N + + + + L L L V+ +++F
Sbjct: 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77
Score = 29.7 bits (67), Expect = 3.6
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFSNV 692
+ VL + N+ S+ L T L + + ++
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 133 bits (336), Expect = 2e-34
Identities = 61/279 (21%), Positives = 120/279 (43%), Gaps = 25/279 (8%)
Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
L V + G +E +T L L ++ ++ +IS L L L + N ++ +
Sbjct: 49 LVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDIS--PLSNLVK-LTNLYIGTNKITDI 103
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
AL L NL L L+ + + + L+ + L+L N ++ L+ + L
Sbjct: 104 S--ALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGL 157
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
L + +++ V + L + L L++N + S + L+SL + NQ +
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQIT 212
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
+ +A + +L SL +N+I L LS L+ L++ N+I ++ + L+
Sbjct: 213 DIT--PVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDINA--VKDLTK 266
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L L++ N + ++ + L L L L++N + E
Sbjct: 267 LKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303
Score = 133 bits (336), Expect = 3e-34
Identities = 66/255 (25%), Positives = 119/255 (46%), Gaps = 20/255 (7%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L I + ++ +IS A L++ L+ L L + +S + LA L + L+L N
Sbjct: 90 LTNLYIGTNKITDIS--ALQNLTN-LRELYLNEDNISDIS--PLANL-TKMYSLNLGANH 143
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ ++ LN+L ++ +K+ ++ +A L L L L N++ ++ L L
Sbjct: 144 NLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASL 198
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
S+ N + + V ++ L L I +N+ + + LA L +LT L N
Sbjct: 199 TSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTN 253
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
QI + + + L+ L L++ N+I +S L +LS L +L L++N L ++I
Sbjct: 254 QISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309
Query: 360 LKSLQELRLDDNDIS 374
L +L L L N I+
Sbjct: 310 LTNLTTLFLSQNHIT 324
Score = 132 bits (334), Expect = 5e-34
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 20/256 (7%)
Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178
L L ++ + +IS L+ + +L L N S L+ + L+ L ++ +
Sbjct: 111 NLRELYLNEDNISDIS--PLANLTK-MYSLNLGANHNLSDL-SPLSNM-TGLNYLTVTES 165
Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
++ + L+ L L L+YN++ +S LA L +L N++T + +
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVAN 219
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
+ + L + +N + S + LS L L I NQ S + A+ L KL L+
Sbjct: 220 MTRLNSLKIGNNKITDL---SPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGS 274
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
NQI + LS L+ L L +N++ + L+NLTTL LS N + + +
Sbjct: 275 NQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330
Query: 359 PLKSLQELRLDDNDIS 374
L + + I
Sbjct: 331 SLSKMDSADFANQVIK 346
Score = 117 bits (295), Expect = 8e-29
Identities = 48/231 (20%), Positives = 100/231 (43%), Gaps = 21/231 (9%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L ++ + A L R L + + + L S+ L ++ K+
Sbjct: 2 AATLATLPAPINQI--FPDADL-AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
++ + L L L L GN++T ++ L L +T+L + N + S + L
Sbjct: 57 ASIQG--IEYLTNLEYLNLNGNQIT--DISPLSNLVKLTNLYIGTNKIT---DISALQNL 109
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHN 323
++L+ L + + S + LA L K+ SL+ N + L ++ L++L + +
Sbjct: 110 TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTES 165
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
++ V+ +A+L++L +L L++N + ++ + L SL N I+
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212
Score = 99 bits (250), Expect = 5e-23
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 190 GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
G ++L L N++ + L LQ +T V + L S+T L ++
Sbjct: 1 GAATLATLPAPINQIFPDAD-----LAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 309
+A + L++L+ L++ NQ + + L+ L KLT+L N+I + +
Sbjct: 54 EKVA---SIQGIEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--AL 106
Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
+ L+ L L L + I +S LA+L+ + +L+L N + L + L L +
Sbjct: 107 QNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVT 163
Query: 370 DNDIS 374
++ +
Sbjct: 164 ESKVK 168
Score = 37.1 bits (87), Expect = 0.017
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
LS L L + +NQ + + GL LT+L N I
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Score = 36.8 bits (86), Expect = 0.020
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ LK+L++ NQ S + L L +L SL ++NQ+ +
Sbjct: 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309
Score = 35.2 bits (82), Expect = 0.059
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
++ L L I +N+ + + LA L +LT L NQI +
Sbjct: 220 MTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN 259
Score = 34.8 bits (81), Expect = 0.075
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
LS L L I NQ S + A+ L KL L+ NQI
Sbjct: 242 LSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQI 277
Score = 34.1 bits (79), Expect = 0.14
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
++ L L++ ++ V +A L L SLS ++NQI+ +
Sbjct: 154 MTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDIS 193
Score = 34.1 bits (79), Expect = 0.16
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+ L LS+ +NQ + LA L L + + NQI +
Sbjct: 176 LTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDIT 215
Score = 33.7 bits (78), Expect = 0.18
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L++L L ++ N + +R LA L K+ S + I
Sbjct: 310 LTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVI 345
Score = 33.7 bits (78), Expect = 0.20
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+SL + NQ + + +A + +L SL +N+I L
Sbjct: 198 LTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLS 237
Score = 33.3 bits (77), Expect = 0.27
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L+ L++ NQ + + L+ L KLT+L N+I +
Sbjct: 65 LTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS 104
Score = 32.5 bits (75), Expect = 0.38
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L L L I N+ + + AL L L L + + I +
Sbjct: 87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS 126
Score = 31.4 bits (72), Expect = 0.91
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L S+ L +A + +S++ + L L L+ + NQI +
Sbjct: 43 LESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDIS 82
Score = 31.0 bits (71), Expect = 1.2
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+ + L++ N S L+ + L L+ +++ +
Sbjct: 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT 171
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L++L+ L + + S + LA L K+ SL+ N
Sbjct: 109 LTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHN 144
Score = 31.0 bits (71), Expect = 1.5
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L+ + + V L+ +T L ++ ++
Sbjct: 21 LAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQG 61
Score = 30.2 bits (69), Expect = 2.1
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L+ L +++ +L N GL++ L L L N ++ + LA L +D D ++
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIR--PLASL-SKMDSADFANQV 344
Query: 180 LYK 182
+ K
Sbjct: 345 IKK 347
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 137 bits (346), Expect = 1e-33
Identities = 53/339 (15%), Positives = 116/339 (34%), Gaps = 30/339 (8%)
Query: 67 DLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNV----TVLPGKFLEGVTLHG 122
D L + D + ++ ++ D R+SL D + N+ T + L
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
+ ++ A S + L +L ++L +
Sbjct: 453 IYFANSPFTYD-----NIAVDWEDANSDYAKQYENEELS-WSNL-KDLTDVELYNCPNMT 505
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQ---------DCLAPLVTLRVLRLQGNRLT-VSV 232
L L L+++ N+ ++ +Q D +++ + N L
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
A+LQ + + LD HN + L L + +NQ + A D++
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHL---EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622
Query: 293 SLSCHHNQIDVL-EDHSFRALSTLSHLDLAHNRIVAV-----SGASLAHLSNLTTLDLSH 346
L HN++ + + +++ + +D ++N+I + N +T+ LS+
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFN 385
N ++ +L + + L +N ++ PE +
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721
Score = 133 bits (336), Expect = 2e-32
Identities = 53/322 (16%), Positives = 119/322 (36%), Gaps = 28/322 (8%)
Query: 77 NKSDLYAISESLRGLEPDERVSLLDCTLSNVT-VLPGKFLEGVTLHGLVI--SSGELKNI 133
++ ++ L + LL ++ + P K ++L I + + I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 134 SDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS 193
S A L+ LQ + N+ + + + + + + + Y+ E S+ L
Sbjct: 441 SK-AIQRLTK-LQIIYFANSPFTYDNIAV------DWEDANSDYAKQYENEELSWSNLKD 492
Query: 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT---------VSVVAALQGLRSVTD 244
L ++L MT D L L L+ L + NR + +
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
+ +N L +++ ++ L +L HN+ + A KLT L +NQI+ +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI 610
Query: 305 EDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTLDLSHNFLRALTQDLITPL--- 360
+ + L +HN++ + + + + + ++D S+N + + +++ +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670
Query: 361 --KSLQELRLDDNDISMEPECI 380
+ + L N+I P +
Sbjct: 671 KGINASTVTLSYNEIQKFPTEL 692
Score = 133 bits (336), Expect = 2e-32
Identities = 52/315 (16%), Positives = 99/315 (31%), Gaps = 22/315 (6%)
Query: 86 ESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSG-ELKNISDGAFIGLSSP 144
E L +ER + + + + L L I+ E+K I + I L
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK-- 426
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+G N ++ + A+ L L + +++ T + Y K
Sbjct: 427 DTQIGNLTNRITFIS-KAIQRL-TKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQ 479
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG------- 257
+ + L L + L + L L + L+++ N
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 258 -PSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
+++ + +N +L + KL L C HN++ L +F L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKL 597
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL-ITPLKSLQELRLDDNDIS 374
+ L L +N+I + A + L SHN L+ + + + + N I
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 375 MEPECIYVGFNTMDL 389
E I +
Sbjct: 658 SEGRNISCSMDDYKG 672
Score = 117 bits (295), Expect = 2e-27
Identities = 52/291 (17%), Positives = 99/291 (34%), Gaps = 36/291 (12%)
Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALA 164
+ +P F + GL S +LK I + + ++ N + +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 165 PLAP----NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP------ 214
+ N + LS+N++ K F S ++ + LS N + ++ ++ L P
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725
Query: 215 -LVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSI 272
L + L+ N+LT +S L ++++D+S+N + P+ S LK I
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F-PTQPLNSSQLKAFGI 783
Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
H + + N+I +L L + N I V
Sbjct: 784 RHQRDAE------------------GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
L LD++ N ++ + P L + C +G
Sbjct: 826 ---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873
Score = 101 bits (252), Expect = 4e-22
Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 22/235 (9%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSP----LQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175
+ + S ++ + + + L N + PT A + + L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIIL 704
Query: 176 SHNQL-------YKLENTSFKGLSSLNFLDLSYNKLMTLSQD-CLAPLVTLRVLRLQGNR 227
S+N + K ++ ++K L +DL +NKL +LS D L L + + N
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGP-----LGPSTVPRLSSLKVLSIAHNQFSSVRR 282
+ S + + H A P+ + SL L I N V
Sbjct: 765 FS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823
Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
+L L N ++ S L +++ + G +
Sbjct: 824 KLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 90.7 bits (225), Expect = 5e-19
Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 23/214 (10%)
Query: 115 LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA------P 168
+G+ + +S E++ F S + + L NNL++ +P ++L P
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSP-ISTIILSNNLMTSIPENSLKPKDGNYKNTY 728
Query: 169 NLDRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ--- 224
L +DL N+L L ++ L L+ +D+SYN + L+ ++
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQR 787
Query: 225 ---GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSS 279
GNR+ + S+ L + N + V L +L IA N S
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI------RKVDEKLTPQLYILDIADNPNIS 841
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 313
+ ++ + +++ + +
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 86.5 bits (214), Expect = 1e-17
Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 27/233 (11%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
+ + + L L+ D + L L+VL + TVS
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
+ + + + + L + + + + + + K +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDS 421
Query: 293 SLSCHHNQIDVLE------DHSFRALSTLSHLDLAHNRIVAVSG---------------- 330
+S QI L + + L+ L + A++ +
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481
Query: 331 ---ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
S ++L +LT ++L + D + L LQ L + N +
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Score = 37.9 bits (88), Expect = 0.012
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L L + +NQ + A D++ L HN++ + +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639
Score = 36.0 bits (83), Expect = 0.041
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L +L HN+ + A KLT L +NQI+ + + +
Sbjct: 572 MVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAF 617
Score = 36.0 bits (83), Expect = 0.051
Identities = 5/51 (9%), Positives = 21/51 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVIG 694
+ +++++N+ A ++++ +N + + ++S G
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722
Score = 35.6 bits (82), Expect = 0.069
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 643 LLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++ L +HN+ + + + S+ +N+I + +
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Score = 34.9 bits (80), Expect = 0.095
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+++ + +N +L + KL L C HN++ L +F
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGT 593
Score = 31.0 bits (70), Expect = 1.7
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L L + +++N FSS +L + H +
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRD 788
Score = 31.0 bits (70), Expect = 1.8
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 644 LSSLKVLSIAHNQFSSVRR---------GALAGLDKLTSLSCHHNQI 681
L L+ L+IA N+ S + K+ +N +
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560
Score = 30.2 bits (68), Expect = 2.6
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVI 693
SL L I N V +L L N ++ S I
Sbjct: 805 CPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYI 851
Score = 30.2 bits (68), Expect = 2.6
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVL 684
L + + N+ +S+ L L+++ +N
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 30.2 bits (68), Expect = 3.0
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS 690
L L + + + + L L +L SL+ N+
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
Score = 29.1 bits (65), Expect = 6.1
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L L +L IA N S+ ++ + +++ +
Sbjct: 825 LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871
Score = 29.1 bits (65), Expect = 6.7
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ LS+A A+ L +L LS + V
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 124 bits (314), Expect = 2e-32
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 8/213 (3%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN-QLYKLENTSFKGLSSLNFLD 198
L Q L L L +P+ A + L PN+ R+ +S + L +LE+ SF LS + ++
Sbjct: 28 SLPPSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86
Query: 199 LSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPL 256
+ + L + D L L L+ L + L + + L+++ N +
Sbjct: 87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146
Query: 257 GPSTVPRLSS-LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRAL-S 313
+ L + L + +N F+SV+ A G KL ++ + N+ + V++ +F + S
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
S LD++ + A+ L HL L +
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
Score = 112 bits (282), Expect = 3e-28
Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 12/230 (5%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
+ + + +P+ L P+ L L L + + +F L +++ + +S +
Sbjct: 11 HQEEDFRVTCKDIQRIPS-----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
Query: 203 -KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA-ALQGLRSVTDLDLSHNLLAGPLGPST 260
L L L + + ++ R + AL+ L + L + + L +
Sbjct: 66 VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Query: 261 VPRLSSLKVLSIAHN-QFSSVRRGALAGLDKLT-SLSCHHNQIDVLEDHSFRALSTLSHL 318
V +L I N +S+ A GL T +L ++N ++ ++F + L +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAV 184
Query: 319 DLAHNR-IVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
L N+ + + + + S + LD+S + AL + LK L
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 87.8 bits (218), Expect = 1e-19
Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 22/250 (8%)
Query: 56 CPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFL 115
C C R T D+ I + L +++ +P
Sbjct: 4 SSPP----CECHQEEDFRVTCK--DIQRIPSLPPSTQ------TLKLIETHLRTIPSHAF 51
Query: 116 EGVT-LHGLVISS-GELKNISDGAFIGLSSPLQALGLPNN-LLSVVPTSALAPLAPNLDR 172
+ + + +S L+ + +F LS + + + N L+ + AL L P L
Sbjct: 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTRNLTYIDPDALKEL-PLLKF 109
Query: 173 LDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMT-LSQDCLAPLVT-LRVLRLQGNRLT 229
L + + L + T L+++ N MT + + L L+L N T
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGL 288
A G + + L+ N + + S +L ++ +++ L L
Sbjct: 170 SVQGYAFNGTKLDA-VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228
Query: 289 DKLTSLSCHH 298
+L + +
Sbjct: 229 KELIARNTWT 238
Score = 86.2 bits (214), Expect = 4e-19
Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 9/184 (4%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
++ + + + + L+L L A L +++ + +S ++
Sbjct: 11 HQEEDFRVTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF- 309
L + LS + + I + + + + AL L L L + + + D +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 310 RALSTLSHLDLAHN-RIVAVSGASLAHLSNLT-TLDLSHNFLRALTQDLITPLKSLQELR 367
+ L++ N + ++ + L N T TL L +N ++ K L +
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVY 185
Query: 368 LDDN 371
L+ N
Sbjct: 186 LNKN 189
Score = 65.0 bits (159), Expect = 6e-12
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSHN 178
L L I + LK D + + L + N ++ +P +A L L L +N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 179 QLYKLENTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVT-LRVLRLQGNRLTVSVVAAL 236
++ +F G L+ + L+ NK L + +D + + +L + +T L
Sbjct: 167 GFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Query: 237 QGLRSVTDLDLSHNL 251
+ L+ + + L
Sbjct: 226 EHLKELIARNT-WTL 239
Score = 63.5 bits (155), Expect = 2e-11
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASLAHLSNLTTLDLSHN-F 348
+L + + H+F L +S + ++ + + + S +LS +T +++ +
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 349 LRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
L + D + L L+ L + + + M P+ V + L
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135
Score = 40.4 bits (95), Expect = 0.001
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFSN 691
L S + L + ++ A + L ++ + + + LE HSF N
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78
Score = 38.4 bits (90), Expect = 0.004
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 644 LSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
LS + + I + + + + AL L L L + + + D +
Sbjct: 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Score = 34.2 bits (79), Expect = 0.11
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFSN 691
L + L + +N F+SV+ A G KL ++ + N+ + V++ +F
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGG 202
Score = 33.8 bits (78), Expect = 0.11
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
+ I + + TL L LR + + L ++ + + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Score = 33.4 bits (77), Expect = 0.15
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 678
+ S +L ++ +++ L L +L + +
Sbjct: 203 VYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
Score = 31.5 bits (72), Expect = 0.81
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQF-SSVRRGALAGL-DKLTSLSCHHNQIDVLEDHSFSN 691
+ L + + N++ + + + A G+ + L + L +
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227
Score = 30.0 bits (68), Expect = 2.3
Identities = 4/50 (8%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFSN 691
L ++ + ++ + + + L K+T + + + + ++ +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 125 bits (316), Expect = 2e-32
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 25/203 (12%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
+ +LDL N+L L + +F L+ L L L+ NKL TL L L L + N+L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
L +L +L L + NQ S+ L
Sbjct: 98 QA-------------------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
KLT LS +N++ L F L++L L L +N++ V + L+ L TL L +N
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 349 LRALTQDLITPLKSLQELRLDDN 371
L+ + + L+ L+ L+L +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 104 bits (262), Expect = 4e-25
Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 3/185 (1%)
Query: 118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH 177
L + S +L ++ AF L+ L+ L L +N L +P L NL+ L ++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTD 94
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
N+L L F L +L L L N+L +L L L L L N L
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
L S+ +L L +N L + +L+ LK L + +NQ V GA L+KL L
Sbjct: 155 KLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 298 HNQID 302
N D
Sbjct: 214 ENPWD 218
Score = 78.5 bits (194), Expect = 2e-16
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 100 LDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
L + + LP G F E L L ++ +L+ + G F L + L L L N L +
Sbjct: 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN-LAELRLDRNQLKSL 124
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
P L L L L +N+L L F L+SL L L N+L + + L L
Sbjct: 125 PPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
+ L+L N+L A L + L L N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 46.1 bits (110), Expect = 1e-05
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
+ LDL N++ ++ + L+ L L L+ N L+ L + LK+L+ L + DN
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 373 ISMEPECIYVG 383
+ P ++
Sbjct: 97 LQALPIGVFDQ 107
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+SLK L + +NQ V GA L +L +L +NQ+ + + +F +
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Score = 39.6 bits (93), Expect = 0.002
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L +L L + NQ S+ L KLT LS +N++ L F
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Score = 39.2 bits (92), Expect = 0.003
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L+ L + N+ ++ G L L L NQ+ L F +
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Score = 38.8 bits (91), Expect = 0.004
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L LS+ +N+ S+ +G L L L ++NQ+ + + +F
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Score = 38.8 bits (91), Expect = 0.004
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L++L + N+ ++ G L L +L N++ L F
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107
Score = 35.0 bits (81), Expect = 0.056
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ LK L + +NQ V GA L+KL L N D
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 35.0 bits (81), Expect = 0.066
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ K L + N+ SS+ A L KL L + N++ L F
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 126 bits (318), Expect = 6e-32
Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 8/235 (3%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ-LYKLENTSFKGLSSLNFLD 198
L L L V+ A + +L+++++S N L +E F L L+ +
Sbjct: 27 DLPRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 199 LS-YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG 257
+ N L+ ++ + L L+ L + + LD+ N+ +
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 258 PSTVPRLSS-LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
++ LS +L + N + A G +N ++ L + F S
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
LD++ RI ++ L +L L + L+ L + L +L E L
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKL--PTLEKLVALMEASLTYP 256
Score = 125 bits (316), Expect = 1e-31
Identities = 47/253 (18%), Positives = 86/253 (33%), Gaps = 13/253 (5%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN-LLSVV 158
C S VT +P L +L+ I GAF G L+ + + N +L V+
Sbjct: 14 FLCQESKVTEIPSDLPRNAIE--LRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVI 70
Query: 159 PTSALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT 217
+ L P L + + N L + +F+ L +L +L +S + L +
Sbjct: 71 EADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 218 LRVLRLQGN-RLTVSVVAALQGLRSVT-DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
+L +Q N + + GL + L L+ N + + S ++ +N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
+ G L +I L + L L + + + +L
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP----TLEK 244
Query: 336 LSNLTTLDLSHNF 348
L L L++
Sbjct: 245 LVALMEASLTYPS 257
Score = 105 bits (264), Expect = 7e-25
Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 33/231 (14%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM-TLSQD 210
+ ++ +P+ L N L +L ++ +F G L +++S N ++ + D
Sbjct: 18 ESKVTEIPSD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 211 CLAPLVTLRVLRLQ-GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
+ L L +R++ N L ++ L +L+
Sbjct: 74 VFSNLPKLHEIRIEKANNLLY----------------INPEAFQN---------LPNLQY 108
Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSH-LDLAHNRIVA 327
L I++ + + L + I +E +SF LS S L L N I
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
+ ++ +N L L D+ L + I P
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Score = 86.0 bits (213), Expect = 3e-18
Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 11/220 (5%)
Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLP-NNLLSVVPTSAL 163
N+ + + + + L L+IS+ +K++ D I L + N + + ++
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSF 149
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
L+ L L+ N + ++ N++F G N L L D +L +
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
R+ L+ L+ + + +P L L L A + S
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNL--------KKLPTLEKLVALMEASLTYPSHCCA 261
Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
+++ L N+ + ++ + + LA +
Sbjct: 262 FANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAED 301
Score = 39.8 bits (93), Expect = 0.002
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
++ +N + G L +I L + N+
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225
Score = 39.4 bits (92), Expect = 0.003
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFSN 691
L + L + +++GA +G L + N + +V+E FSN
Sbjct: 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77
Score = 38.7 bits (90), Expect = 0.005
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L + I N + A L L L + I L D +
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Score = 37.9 bits (88), Expect = 0.010
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L + N + A G +N ++ L + F
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200
Score = 36.0 bits (83), Expect = 0.036
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFSN 691
L +L+ L I++ + + L + I +E +SF
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Score = 32.5 bits (74), Expect = 0.39
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSC-HHNQIDVLEDHSFSN 691
L+ + I+ N + + L KL + N + + +F N
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102
Score = 32.1 bits (73), Expect = 0.54
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
S +L I+ + S+ L L KL + S ++ +
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 122 bits (307), Expect = 4e-31
Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 33/230 (14%)
Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201
+ + L+ +P + L LS N LY + + L L+L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPK----DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
+L L D L L L L N+L S+ Q L ++T LD+S N
Sbjct: 65 AELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN----------- 110
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 111 --------------RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+N + + L L NL TL L N L + + L L N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGN 205
Score = 107 bits (268), Expect = 8e-26
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 13/195 (6%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
++S ++ L L D +L L N L +A L +T L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 247 LSHNLLAGPLGPSTVP---RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
L L + + L L L ++HNQ S+ L LT L N++
Sbjct: 62 LDRAEL------TKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTS 114
Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 363
L + R L L L L N + + L L L L++N L L L+ L++L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 364 QELRLDDNDISMEPE 378
L L +N + P+
Sbjct: 175 DTLLLQENSLYTIPK 189
Score = 72.4 bits (178), Expect = 4e-14
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
LD + + + LP L L +S L ++ GA GL LQ L L N L +P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLP 140
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
L P P L++L L++N L +L GL +L+ L L N L T+ + L
Sbjct: 141 PGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLP 198
Query: 220 VLRLQGN 226
L GN
Sbjct: 199 FAFLHGN 205
Score = 40.1 bits (94), Expect = 0.001
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L + N+ ++ G L KL LS +N + L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Score = 39.3 bits (92), Expect = 0.003
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ LS+A+N + + G L GL+ L +L N + + F +
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 39.3 bits (92), Expect = 0.003
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L VL ++ N+ +S+ GAL GL +L L N++ L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Score = 34.7 bits (80), Expect = 0.073
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L L ++HNQ S+ L LT L N++ L +
Sbjct: 76 LPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Score = 33.2 bits (76), Expect = 0.24
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L +L ++ N + L +LT L+ ++ L+
Sbjct: 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Score = 30.5 bits (69), Expect = 1.8
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
+ L L++ + + + L L +L HNQ+ L
Sbjct: 54 YTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 127 bits (320), Expect = 6e-31
Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 19/249 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L ++ T L ++D++ +++ + ++ + L ++ L L+ NKL
Sbjct: 23 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 77
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+ L L L L L N++ +++L+ L+ + L L HN ++ + + L
Sbjct: 78 TDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI---NGLVHL 130
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
L+ L + +N+ + + L+ L KL +LS NQI + L+ L +L L+ N
Sbjct: 131 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNH 186
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF 384
I + LA L NL L+L + + L ++ D + + PE I
Sbjct: 187 ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL-VTPEIISDDG 243
Query: 385 NTMDLELIY 393
+ + +
Sbjct: 244 DYEKPNVKW 252
Score = 120 bits (303), Expect = 7e-29
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ + + + A + +L + L+S++ + + + +
Sbjct: 1 MGETITVSTPIKQI--FPDDAFA-ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA--GPLGPSTVP 262
++ + L + L L GN+LT + L L+++ L L N + L
Sbjct: 56 KSVQ--GIQYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWLFLDENKIKDLSSLK----- 106
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
L LK LS+ HN S + L L +L SL +N+I + L+ L L L
Sbjct: 107 DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLED 162
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
N+I + LA L+ L L LS N + L + LK+L L L + +P
Sbjct: 163 NQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPIN 215
Score = 39.3 bits (91), Expect = 0.004
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+ L LS+ NQ S + LAGL KL +L N I L
Sbjct: 152 LTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR 191
Score = 37.8 bits (87), Expect = 0.011
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L +L L + N+ + +L L KL SLS HN I +
Sbjct: 86 LKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN 125
Score = 37.0 bits (85), Expect = 0.020
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L L+ L + +N+ + + L+ L KL +LS NQI +
Sbjct: 130 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 170
Score = 36.6 bits (84), Expect = 0.025
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L LK LS+ HN S + L L +L SL +N+I +
Sbjct: 108 LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT 147
Score = 35.1 bits (80), Expect = 0.086
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVI 693
L+ L+ L ++ N S +R ALAGL L L + + SN++
Sbjct: 174 LTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 221
Score = 34.7 bits (79), Expect = 0.10
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+S+ + ++ SV+ + L +T L + N++ ++
Sbjct: 42 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK 81
Score = 34.3 bits (78), Expect = 0.13
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L ++ L + N+ + ++ L L L L N+I L
Sbjct: 64 LPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDLS 103
Score = 31.2 bits (70), Expect = 1.2
Identities = 2/42 (4%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
+ ++ + L+ + + +++ I ++
Sbjct: 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 121 bits (305), Expect = 8e-29
Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 41/338 (12%)
Query: 79 SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAF 138
++ + + DE+ + V + L I+S S
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ-QKSIKKS 178
Query: 139 IGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL------------------ 180
++ +G +N ++ V A+ L L + + ++
Sbjct: 179 SRITLKDTQIGQLSNNITFVS-KAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQ 236
Query: 181 -YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--------S 231
YK E+ + L L +++ +T L L ++++ + NR
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296
Query: 232 VVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
+A + + + +N L P+ +++ ++ L +L +NQ A K
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTLDLSHNFL 349
L SL+ +NQI + + + +L AHN++ + + +S ++ +D S+N +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 350 RALTQDLITP-------LKSLQELRLDDNDISMEPECI 380
++ P ++ + L +N IS P+ +
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Score = 121 bits (305), Expect = 8e-29
Identities = 42/274 (15%), Positives = 87/274 (31%), Gaps = 25/274 (9%)
Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
+ I ++ L +N L +P A + +D S+N++ ++ +F
Sbjct: 365 ITEIPANFCGFTEQ-VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 190 G-------LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-------VSVVAA 235
+++ ++LS N++ ++ + L + L GN LT
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 295
+ +T +DL N L L L + +++N FS L
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFG 542
Query: 296 CHHNQIDV---LEDH---SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
+ + +L+ L + N I V+ N++ LD+ N
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPN 599
Query: 350 RALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
++ + P L + C +
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633
Score = 120 bits (304), Expect = 1e-28
Identities = 28/267 (10%), Positives = 88/267 (32%), Gaps = 21/267 (7%)
Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP----LAPNLDRLDLSHNQLYKLEN 185
++ F+ L + ++ P + ++ N + +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
+ L+ L + + + + + + + L+ +TD+
Sbjct: 201 -AVMRLTKLRQFYMGNSPFVAEN-----ICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR--------GALAGLDKLTSLSCH 297
++ + L P+ + L ++++++A N+ S + +K+ +
Sbjct: 255 EVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 298 HNQIDVLE-DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
+N + + S + + L L+ +N++ + L +L+L++N + + +
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANF 372
Query: 357 ITPLKSLQELRLDDNDISMEPECIYVG 383
+ ++ L N + P
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAK 399
Score = 94.7 bits (236), Expect = 2e-20
Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 24/237 (10%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSP------LQALGLPNNLLSVVPTSALAPLAPNLDRL 173
+ + S E+ ++ F L + ++ L NN +S P + L +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSI 462
Query: 174 DLSHNQL-------YKLENTSFKGLSSLNFLDLSYNKLMTLSQD-CLAPLVTLRVLRLQG 225
+L N L K EN +FK L +DL +NKL LS D L L + L
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522
Query: 226 NRLT-----VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
N + + L+G D N P + SL L I N V
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRKV 581
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
++ L N ++ L +++ + G +
Sbjct: 582 NEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 93.2 bits (232), Expect = 6e-20
Identities = 31/253 (12%), Positives = 71/253 (28%), Gaps = 22/253 (8%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF----KGL 191
G + + + L L S A+ L L+ L L + E
Sbjct: 74 GVSLNSNGRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISAN 132
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVT--LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
S D L + + S+ + + T +
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 309
N + V RL+ L+ + ++ F + + + ED +
Sbjct: 193 NNITFV--SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKW 245
Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL--------ITPLK 361
L L+ +++ + + L L + ++++ N + Q +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305
Query: 362 SLQELRLDDNDIS 374
+Q + + N++
Sbjct: 306 KIQIIYIGYNNLK 318
Score = 35.0 bits (81), Expect = 0.082
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L L++A+NQ + + +++ +LS HN++
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Score = 33.5 bits (77), Expect = 0.25
Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 624 DINRNN----SDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 679
D + N + L T ++ +++++NQ S + + L+S++ N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467
Query: 680 QIDVLEDHSFSNV 692
+ + +S +
Sbjct: 468 MLTEIPKNSLKDE 480
Score = 31.9 bits (73), Expect = 0.71
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L +L +NQ A KL SL+ +NQI + +
Sbjct: 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGF 375
Score = 31.9 bits (73), Expect = 0.89
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAG-LDKLTSLSCHHNQIDVLEDHSFSN 691
++ LS AHN+ + A + ++++ +N+I ++ +F
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Score = 31.6 bits (72), Expect = 0.95
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLD-------KLTSLSCHHNQIDVLEDHSFSN 691
+S + + ++N+ SV LD ++S++ +NQI FS
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455
Score = 31.2 bits (71), Expect = 1.5
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQI 681
+ ++++ I +N + +L + KL L C +NQ+
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342
Score = 28.9 bits (65), Expect = 7.9
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
+ ++ VL I N S+ + + +++
Sbjct: 585 ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 115 bits (290), Expect = 9e-29
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 23/238 (9%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L ++ T L ++D++ +++ + ++ + L ++ L L+ NKL
Sbjct: 26 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA--GPLGPSTVP 262
+ LA L L L L N++ +++L+ L+ + L L HN ++ L
Sbjct: 81 TDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDINGLV----- 131
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
L L+ L + +N+ + + L+ L KL +LS NQI + L+ L +L L+
Sbjct: 132 HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK 187
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
N I + LA L NL L+L + + L ++ D + PE I
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEII 242
Score = 89.0 bits (221), Expect = 1e-19
Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 31/279 (11%)
Query: 78 KSDLYAISESLRGLEPDER---VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNIS 134
S+ + ++ + D+ + +VT E ++ ++ ++ ++K++
Sbjct: 4 GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ 62
Query: 135 DGAFIGLSSP--LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLS 192
G+ + L L N L+ + LA L NL L L N++ L + K L
Sbjct: 63 -----GIQYLPNVTKLFLNGNKLTDI--KPLANL-KNLGWLFLDENKVKDLSS--LKDLK 112
Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
L L L +N + ++ L L L L L N++T + L L + L L N +
Sbjct: 113 KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 168
Query: 253 A--GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
+ PL L+ L+ L ++ N S +R ALAGL L L + +
Sbjct: 169 SDIVPLA-----GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQS 221
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
L + + +V ++ + ++ +
Sbjct: 222 NLVVPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHLP 258
Score = 37.0 bits (86), Expect = 0.016
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L+ L LS+ NQ S + LAGL KL +L N I L
Sbjct: 155 LTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA 195
Score = 34.6 bits (80), Expect = 0.080
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L L+ L + +N+ + + L+ L KL +LS NQI +
Sbjct: 133 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 173
Score = 34.3 bits (79), Expect = 0.098
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L +L L + N+ + +L L KL SLS HN I +
Sbjct: 89 LKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN 128
Score = 34.3 bits (79), Expect = 0.10
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L LK LS+ HN S + L L +L SL +N+I +
Sbjct: 111 LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT 150
Score = 33.9 bits (78), Expect = 0.13
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVI 693
L+ L+ L ++ N S +R ALAGL L L + + SN++
Sbjct: 177 LTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 224
Score = 31.9 bits (73), Expect = 0.65
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L+S+ + ++ SV+ + L +T L + N++ ++
Sbjct: 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP 85
Score = 31.6 bits (72), Expect = 0.71
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L ++ L + N+ + ++ LA L L L N++ L
Sbjct: 67 LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS 106
Score = 29.3 bits (66), Expect = 4.8
Identities = 2/42 (4%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
+ ++ + L+ + + +++ I ++
Sbjct: 23 FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 118 bits (298), Expect = 1e-28
Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 21/255 (8%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L ISS ++ +IS L++ L++L NN +S + L L NLD L L+ NQ
Sbjct: 179 LERLDISSNKVSDIS--VLAKLTN-LESLIATNNQISDIT--PLGIL-TNLDELSLNGNQ 232
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
L + + L++L LDL+ N++ L+ L+ L L L+L N+++ ++ L GL
Sbjct: 233 LKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGL 286
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
++T+L+L+ N L S + L +L L++ N S + ++ L KL L ++N
Sbjct: 287 TALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNN 341
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
++ + S L+ ++ L HN+I ++ LA+L+ +T L L+ +
Sbjct: 342 KVSDVS--SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKAN 397
Query: 360 LKSLQELRLDDNDIS 374
+ ++ +
Sbjct: 398 VSIPNTVKNVTGALI 412
Score = 106 bits (266), Expect = 2e-24
Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 22/232 (9%)
Query: 144 PLQALG-LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
PL + + ++ + LA + L + S L + L
Sbjct: 2 PLGSATITQDTPINQI--FTDTALA-EKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRL 56
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP 262
+ ++ + L L + N+LT + L+ L + D+ +++N +A + +
Sbjct: 57 GIKSIDG--VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADI---TPLA 109
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
L++L L++ +NQ + + L L L L N I + + L++L L
Sbjct: 110 NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-G 164
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
N++ + LA+L+ L LD+S N + + ++ L +L+ L +N IS
Sbjct: 165 NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212
Score = 101 bits (254), Expect = 6e-23
Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 19/235 (8%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L ++ +LK+I L++ L L L NN +S + L+ L L L L NQ
Sbjct: 223 LDELSLNGNQLKDIG--TLASLTN-LTDLDLANNQISNLA--PLSGL-TKLTELKLGANQ 276
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
+ + GL++L L+L+ N+L +S ++ L L L L N ++ ++ + L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISD--ISPVSSL 330
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
+ L +N ++ S++ L+++ LS HNQ S + LA L ++T L +
Sbjct: 331 TKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 385
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 354
+ +S + + ++ + A+++ + T D++ N +
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNE 438
Score = 88.1 bits (219), Expect = 2e-18
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L L +T +V + L VT L + V L++L ++
Sbjct: 20 DTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQIN 74
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
++NQ + + L L KL + ++NQI + L+ L+ L L +N+I +
Sbjct: 75 FSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-- 128
Query: 332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L +L+NL L+LS N + ++ ++ L SLQ+L + ++P
Sbjct: 129 PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP 172
Score = 36.1 bits (84), Expect = 0.038
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L++L LS+ NQ + G LA L LT L +NQI L
Sbjct: 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
Score = 34.9 bits (81), Expect = 0.082
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L+++ LS HNQ S + LA L ++T L + + +NV
Sbjct: 352 LTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANV 398
Score = 34.2 bits (79), Expect = 0.14
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L +L L++ N S + ++ L KL L ++N++ +
Sbjct: 308 LKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDVS 347
Score = 34.2 bits (79), Expect = 0.17
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+ L L + NQ S++ LAGL LT+L + NQ++ +
Sbjct: 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS 303
Score = 33.8 bits (78), Expect = 0.21
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+ L+ L +N+ S V +LA L + LS HNQI L
Sbjct: 330 LTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT 369
Score = 33.4 bits (77), Expect = 0.28
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L++L L +A+NQ S++ L+GL KLT L NQI +
Sbjct: 242 LTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP 282
Score = 33.4 bits (77), Expect = 0.28
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L+ L +NQ S + L L L LS + NQ+ +
Sbjct: 198 LTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG 237
Score = 33.0 bits (76), Expect = 0.32
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L+ L I+ N+ S + LA L L SL +NQI +
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT 215
Score = 33.0 bits (76), Expect = 0.39
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L+ L + + +NQ + + LA L LT L+ +NQI
Sbjct: 89 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQI 124
Score = 32.6 bits (75), Expect = 0.40
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L++L ++ ++NQ + + L L KL + ++NQI +
Sbjct: 67 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP 107
Score = 32.2 bits (74), Expect = 0.62
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L L++ +NQ + + L L L L N I +
Sbjct: 111 LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS 150
Score = 31.1 bits (71), Expect = 1.3
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L L + NQ + ++ L LT L+ + N I +
Sbjct: 286 LTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS 325
Score = 30.3 bits (69), Expect = 2.3
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L + L S+ + L+ LT ++ +NQ+ +
Sbjct: 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT 84
Score = 30.3 bits (69), Expect = 2.5
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L+ + + + LD++T+L I ++
Sbjct: 23 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 113 bits (284), Expect = 8e-28
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 19/250 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ L ++ + + L NL L+L NQ+ L K L+ + L+LS N L
Sbjct: 43 ITTLSAFGTGVTTI--EGVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+S +A L +++ L L ++T V L GL ++ L L N + S + L
Sbjct: 98 KNVSA--IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI---SPLAGL 150
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
++L+ LSI + Q S + LA L KLT+L N+I + +L L + L +N+
Sbjct: 151 TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQ 206
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF 384
I VS LA+ SNL + L++ + L ++ + P I
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP-IAPATISDNG 263
Query: 385 NTMDLELIYS 394
L ++
Sbjct: 264 TYASPNLTWN 273
Score = 112 bits (281), Expect = 2e-27
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 17/207 (8%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
N ++ + + + L + L + T+ + L L L L+ N+
Sbjct: 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQ 74
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+T +A L+ L +T+L+LS N L S + L S+K L + Q + V LAG
Sbjct: 75 IT--DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVT--PLAG 127
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
L L L NQI + L+ L +L + + ++ ++ LA+LS LTTL N
Sbjct: 128 LSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ ++ + L +L E+ L +N IS
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQIS 208
Score = 79.3 bits (196), Expect = 2e-16
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 13/164 (7%)
Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
L + + +T L +T L + V L++L L
Sbjct: 14 PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGL 68
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
+ NQ + + L L K+T L N + + + L ++ LDL +I V+
Sbjct: 69 ELKDNQITDLA--PLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP 124
Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
LA LSNL L L N + ++ + L +LQ L + + +S
Sbjct: 125 --LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164
Score = 77.0 bits (190), Expect = 1e-15
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
++V+ L + + + + T L + LS +++ + L
Sbjct: 8 AINVIFPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTTIE--GVQYL 62
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
+ L L NQI L + L+ ++ L+L+ N + VS +A L ++ TLDL+
Sbjct: 63 NNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118
Query: 349 LRALTQDLITPLKSLQELRLDDNDIS 374
+ +T + L +LQ L LD N I+
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQIT 142
Score = 35.0 bits (81), Expect = 0.071
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L++L+ LSI + Q S + LA L KLT+L N+I +
Sbjct: 150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP 190
Score = 34.7 bits (80), Expect = 0.087
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
LS+L+VL + NQ +++ LAGL L LS + Q+ L
Sbjct: 128 LSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT 167
Score = 33.9 bits (78), Expect = 0.14
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
LS L L N+ S + LA L L + +NQI +
Sbjct: 172 LSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS 211
Score = 33.9 bits (78), Expect = 0.15
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVI 693
L +L + + +NQ S V LA L ++ + I +N++
Sbjct: 194 LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLV 241
Score = 32.7 bits (75), Expect = 0.33
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L S+K L + Q + V LAGL L L NQI +
Sbjct: 106 LQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS 145
Score = 32.4 bits (74), Expect = 0.41
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS 688
L+ + L ++ N +V A+AGL + +L QI + +
Sbjct: 84 LTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLA 126
Score = 32.0 bits (73), Expect = 0.68
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L L + NQ + + L L K+T L N + +
Sbjct: 62 LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVS 101
Score = 29.7 bits (67), Expect = 3.1
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L + LS +++ + L+ L L NQI L
Sbjct: 40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLA 79
Score = 28.5 bits (64), Expect = 8.0
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++ ++ + + A LD +T+LS + +E
Sbjct: 18 LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE 57
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 107 bits (269), Expect = 3e-26
Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 21/227 (9%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
N + +L + L + K LS + + + + +L+ + L+ L L N+
Sbjct: 19 ANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ 74
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS--SLKVLSIAHNQFSSVRRGAL 285
++ ++ L+ L + +L ++ N L + + L L + +N+ +L
Sbjct: 75 ISD--LSPLKDLTKLEELSVNRNRL------KNLNGIPSACLSRLFLDNNELRDTD--SL 124
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
L L LS +N++ + LS L LDL N I G L L + +DL+
Sbjct: 125 IHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLT 180
Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELI 392
L ++ D + P I G + +D ++
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDPDGRW-ISPYYISNGGSYVDGCVL 226
Score = 35.8 bits (83), Expect = 0.029
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L +L++LSI +N+ S+ L L KL L H N+I
Sbjct: 127 LKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG 167
Score = 34.2 bits (79), Expect = 0.12
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++LK L ++HNQ S + L L KL LS + N++ L +
Sbjct: 62 FTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIPSAC 107
Score = 33.5 bits (77), Expect = 0.19
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+ L L + +N+ +L L L LS +N++ +
Sbjct: 105 SACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIVM 145
Score = 31.9 bits (73), Expect = 0.62
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
LS ++ + ++ S+ + L L HNQI L
Sbjct: 40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLS 79
Score = 31.5 bits (72), Expect = 0.78
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
LS L+VL + N+ ++ L L K+ + +
Sbjct: 149 LSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKC 184
Score = 29.6 bits (67), Expect = 3.3
Identities = 4/42 (9%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++ ++ + + + L + + + ++ I L
Sbjct: 18 LANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLA 57
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 113 bits (284), Expect = 5e-26
Identities = 80/316 (25%), Positives = 126/316 (39%), Gaps = 29/316 (9%)
Query: 72 LRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELK 131
L A+S SL L E + L + ++ + G F +L L +S L
Sbjct: 57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSG-FKCSASLTSLDLSRNSLS 113
Query: 132 -NISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYK---LENT 186
++ +G S L+ L + +N L S L +L+ LDLS N + +
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWV 172
Query: 187 SFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
G L L +S NK+ + ++ V L L + N + + L ++ L
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHL 228
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL--AGLDKLTSLSCHHNQID- 302
D+S N L+G + + LK+L+I+ NQF G + L L LS N+
Sbjct: 229 DISGNKLSGDF-SRAISTCTELKLLNISSNQFV----GPIPPLPLKSLQYLSLAENKFTG 283
Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLIT 358
+ D A TL+ LDL+ N G S L +L LS N L D +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 359 PLKSLQELRLDDNDIS 374
++ L+ L L N+ S
Sbjct: 341 KMRGLKVLDLSFNEFS 356
Score = 101 bits (255), Expect = 1e-22
Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 19/247 (7%)
Query: 138 FIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLY-KLENTSFKGLSSLN 195
F+G S LQ L + N LS + ++ L L++S NQ + L SL
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRA-ISTC-TELKLLNISSNQFVGPIPPLP---LKSLQ 272
Query: 196 FLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254
+L L+ NK + TL L L GN +V + L LS N +G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFRA 311
L T+ ++ LKVL ++ N+FS + L +L N +L +
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 312 LSTLSHLDLAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELR 367
+TL L L +N +G +L++ S L +L LS N+L + L + L L++L+
Sbjct: 393 KNTLQELYLQNNGF---TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLK 448
Query: 368 LDDNDIS 374
L N +
Sbjct: 449 LWLNMLE 455
Score = 96.5 bits (241), Expect = 7e-21
Identities = 55/243 (22%), Positives = 87/243 (35%), Gaps = 14/243 (5%)
Query: 137 AFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
+ S L +L L N LS +P+S L L L L L N L + +L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSS-LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 196 FLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254
L L +N L + L+ L + L NRLT + + L ++ L LS+N +G
Sbjct: 470 TLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRALS 313
+ P+ + SL L + N F+ G + A + K + N I +
Sbjct: 529 NI-PAELGDCRSLIWLDLNTNLFN----GTIPAAMFKQSGKI-AANFIAGKRYVYIKNDG 582
Query: 314 TLSHLDLAHNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
A N + L LS +++ T S+ L + N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 372 DIS 374
+S
Sbjct: 643 MLS 645
Score = 95.0 bits (237), Expect = 2e-20
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 18/213 (8%)
Query: 173 LDLSHNQLYKLENT---SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
+DLS L + S L+ L L LS + + S +L L L N L+
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSRNSLS 113
Query: 230 --VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS---VRRGA 284
V+ + +L + L++S N L P S +L+SL+VL ++ N S V
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173
Query: 285 LAGLDKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGA--SLAHLSNLTT 341
G +L L+ N+ + L LD++ N S L S L
Sbjct: 174 SDGCGELKHLAISGNK---ISGDVDVSRCVNLEFLDVSSNNF---STGIPFLGDCSALQH 227
Query: 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
LD+S N L I+ L+ L + N
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Score = 78.0 bits (193), Expect = 5e-15
Identities = 50/247 (20%), Positives = 77/247 (31%), Gaps = 48/247 (19%)
Query: 137 AFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
+ L+ L L N L+ +P+ L+ NL+ + LS+N+L L +L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSG-LSNC-TNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 196 FLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT--------------------V 230
L LS N L +L L L N
Sbjct: 518 ILKLSNNSFSGNIPAELGD-----CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 231 SVVAALQGLRSVTDLDLSHNL--LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
++ + + NL G + RLS+ +I +
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 289 DKLTSLSCHHNQIDVLEDH---SFRALSTLSHLDLAHNRIVAVSG---ASLAHLSNLTTL 342
+ L +N L + ++ L L+L HN I SG + L L L
Sbjct: 632 GSMMFLDMSYNM---LSGYIPKEIGSMPYLFILNLGHNDI---SGSIPDEVGDLRGLNIL 685
Query: 343 DLSHNFL 349
DLS N L
Sbjct: 686 DLSSNKL 692
Score = 69.9 bits (172), Expect = 1e-12
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 218 LRVLRLQGNRLTV---SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
+ + L L V +V ++L L + L LS++ + G + S +SL L ++
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSR 109
Query: 275 NQFSSV--RRGALAGLDKLTSLSCHHNQID-VLEDHSFRALSTLSHLDLAHNRI---VAV 328
N S +L L L+ N +D + L++L LDL+ N I V
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDL-ITPLKSLQELRLDDNDIS 374
L L +S N ++ D+ ++ +L+ L + N+ S
Sbjct: 170 GWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSSNNFS 213
Score = 69.6 bits (171), Expect = 2e-12
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 16/150 (10%)
Query: 137 AFIGLSSPLQALGLPNNLLS---VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS 193
+I + NLL + L L + +++ + +F S
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRL-STRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
+ FLD+SYN L + + L +L L N ++ S+ + LR + LDLS
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGS-----MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 249 HNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
N L G + P + L+ L + +++N S
Sbjct: 689 SNKLDGRI-PQAMSALTMLTEIDLSNNNLS 717
Score = 66.5 bits (163), Expect = 2e-11
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 9/143 (6%)
Query: 240 RSVTDLDLSHNLLAGPLG--PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
VT +DLS L S++ L+ L+ L ++++ + G LTSL
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108
Query: 298 HNQI--DVLEDHSFRALSTLSHLDLAHNRIVAVSGAS-LAHLSNLTTLDLSHNFLRA--- 351
N + V S + S L L+++ N + S L++L LDLS N +
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168
Query: 352 LTQDLITPLKSLQELRLDDNDIS 374
+ L L+ L + N IS
Sbjct: 169 VGWVLSDGCGELKHLAISGNKIS 191
Score = 61.1 bits (149), Expect = 9e-10
Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 1/149 (0%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N + + + + + LS+ N +++ +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
++ L + N L+ + + + + L+L HN ++G + P V L L +L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILD 686
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
++ N+ A++ L LT + +N
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Score = 45.7 bits (109), Expect = 4e-05
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 21/128 (16%)
Query: 139 IGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENT-----SFKGLSS 193
+ S + + + + ++ LD+S+N L + +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNML-----SGYIPKEIGSMPY 657
Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
L L+L +N + + L L +L L N+L + A+ L +T++DLS
Sbjct: 658 LFILNLGHNDISGSIPDEVGD-----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 249 HNLLAGPL 256
+N L+GP+
Sbjct: 713 NNNLSGPI 720
Score = 29.1 bits (66), Expect = 6.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 644 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQI 681
S L+ L+++ N FS + L + L L N+
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 111 bits (279), Expect = 6e-26
Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 9/235 (3%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPN----LDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
+ + + N L + L + + ++ ++ S++N +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLG 257
+ + + C + + L N LT +V L + L L N L
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
++ SL+ L I+ N S +G + L SL+ N + +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
LDL N+I ++ + L L L+++ N L+++ + L SLQ++ L N
Sbjct: 425 VLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 98.0 bits (244), Expect = 1e-21
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 10/212 (4%)
Query: 95 ERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
+ +S+ + ++ + + + +S L NN
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNN 334
Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS--FKGLSSLNFLDLSYNKL-MTLSQD 210
LL+ L L+ L L NQL +L + + SL LD+S N + +
Sbjct: 335 LLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
+ +L L + N LT ++ L + LDL N + P V +L +L+ L
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI--PKQVVKLEALQEL 449
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
++A NQ SV G L L + H N D
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Score = 95.3 bits (237), Expect = 9e-21
Identities = 45/251 (17%), Positives = 76/251 (30%), Gaps = 9/251 (3%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N L VP L+ L++S N + +L + LS L L +S+N++ L
Sbjct: 9 KNGLIHVPKD----LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L L L N+L + ++ LDLS N +S LK L
Sbjct: 65 FKFNQELEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
++ +A L+ L E L + L
Sbjct: 122 LSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFH 179
Query: 332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
+ +S T +L + ++ + +D +L N +
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239
Query: 392 IYSGVWRHSTL 402
I VW +
Sbjct: 240 ILQLVWHTTVW 250
Score = 92.2 bits (229), Expect = 9e-20
Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 20/278 (7%)
Query: 113 KFLEGVTLHGLVISSGELKNISDGAFIGLS--SPLQALGLPNNLLSVVPTSALAPLAPNL 170
+ +LH + ++ E I D + ++ + + S LA L N
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP----------LVTLRV 220
+L+ N + N+ + L + + Y + + L L +
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSS 279
++ + + ++ + + + + P ++S L ++N +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTD 338
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHS--FRALSTLSHLDLAHNRIVAVS-GASLAHL 336
L +L +L NQ+ L + + +L LD++ N + +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
+L +L++S N L + P ++ L L N I
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK 434
Score = 84.9 bits (210), Expect = 2e-17
Identities = 47/274 (17%), Positives = 99/274 (36%), Gaps = 16/274 (5%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAP-NLDRLDLSHN 178
L L +S+ L+ S L+ L L L +L + ++
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL---------RLQGNRLT 229
+ + + + S K +++L ++ L+ L L+ ++ +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP----RLSSLKVLSIAHNQFSSVRRGAL 285
+ L +V +S+ L G L L +L + + + F +
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
+ + + ++ +S HLD ++N + + HL+ L TL L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 346 HNFLRALTQ--DLITPLKSLQELRLDDNDISMEP 377
N L+ L++ ++ T +KSLQ+L + N +S +
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Score = 77.2 bits (190), Expect = 5e-15
Identities = 50/308 (16%), Positives = 90/308 (29%), Gaps = 46/308 (14%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
L L L+IS ++ + F L+ L L +N L + NL
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQE-LEYLDLSHNKLVKISCHPT----VNL 92
Query: 171 DRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP--------------- 214
LDLS N L F +S L FL LS L S +A
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 215 -------LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL----------G 257
L L T + + T +L + + L
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 258 PSTVPRLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQIDVLE-----DHSF 309
+ + L L++ + + + +R L + S + ++ D+S
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272
Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
+L LS + + SN+ + + + R + + + L
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332
Query: 370 DNDISMEP 377
+N ++
Sbjct: 333 NNLLTDTV 340
Score = 75.7 bits (186), Expect = 2e-14
Identities = 42/306 (13%), Positives = 77/306 (25%), Gaps = 48/306 (15%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
F L L +S +L IS + L+ L L N +P L
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKIS---CHPTVN-LKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
L LS L K L+ L + L L T
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTN 175
Query: 231 SVVAALQGLRSVTDLDLSHNLLAG------------------------------------ 254
+ + T +L + +
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 255 -PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-----GLDKLTSLSCHHNQIDVLEDHS 308
+ + +++ SI++ + L L+ + + +
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 309 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
+ S ++ + + V + +S LD S+N L + L L+ L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 369 DDNDIS 374
N +
Sbjct: 356 QMNQLK 361
Score = 38.7 bits (90), Expect = 0.006
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L+I+ N S + + L KL L HN+I L+ F
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67
Score = 36.8 bits (85), Expect = 0.021
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
+S L ++N + L +L +L NQ+ L +
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
Score = 36.0 bits (83), Expect = 0.046
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L++L I+HN+ + +L L HN++ + H N
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN 91
Score = 34.5 bits (79), Expect = 0.14
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 616 IPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 675
+P + D++ N S + + L +L+ L++A NQ SV G L L +
Sbjct: 419 LPPRIKVLDLHSNKIKS----IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 676 CHHNQID 682
H N D
Sbjct: 475 LHTNPWD 481
Score = 33.3 bits (76), Expect = 0.31
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +KVL + N+ S+ + + L+ L L+ NQ+ + D F
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDR 466
Score = 30.2 bits (68), Expect = 2.3
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQI 681
L+ L+ L + NQ + + + L L N +
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Score = 29.8 bits (67), Expect = 3.4
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 644 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
+LK L ++ N F ++ + +L L ++ +++
Sbjct: 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Score = 29.8 bits (67), Expect = 3.7
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
SL L+++ N + L ++ L H N+I +
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVV 441
Score = 29.8 bits (67), Expect = 3.8
Identities = 4/48 (8%), Positives = 15/48 (31%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S++ + + + V + + L +N + + +
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 108 bits (272), Expect = 3e-25
Identities = 58/280 (20%), Positives = 100/280 (35%), Gaps = 33/280 (11%)
Query: 95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
+ + + L +T L + + +++ I + L L +N
Sbjct: 21 ASEVAAAFEMQATDTISEEQLATLTS--LDCHNSSITDMTG---IEKLTGLTKLICTSNN 75
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
++ + S NL L N+L L L+ L +L+ NKL L ++
Sbjct: 76 ITTLDLSQN----TNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD---VSQ 125
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L N LT V+ L T+LD N + V + L L +
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQL---TELDCHLNKK---ITKLDVTPQTQLTTLDCSF 179
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
N+ + + ++ L L+C N I L+ L+ LD + N++ + +
Sbjct: 180 NKITEL---DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI---DVT 230
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L+ LT D S N L L ++ L L L D+
Sbjct: 231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL 267
Score = 97.5 bits (243), Expect = 1e-21
Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 28/250 (11%)
Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
K I+ + L L N ++ + S L+RL+ N + KL+
Sbjct: 159 KKITKLDVTPQTQ-LTTLDCSFNKITELDVSQN----KLLNRLNCDTNNITKLD---LNQ 210
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
L FLD S NKL + + PL L N LT V+ L L T L
Sbjct: 211 NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKL---TTLHCIQT 264
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
L + + +++ ++ + +L L C I L+
Sbjct: 265 DL------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LS 315
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L +L L + + + ++H + L +L + ++ + + +L +
Sbjct: 316 QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAE 370
Query: 371 NDISMEPECI 380
P+
Sbjct: 371 GQTITMPKET 380
Score = 92.4 bits (230), Expect = 6e-20
Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 20/207 (9%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
N + ++ + S + L++L LD + + ++ + L L L N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+T ++ L T L N L V L+ L L+ N+ + + ++
Sbjct: 76 ITTLDLSQNTNL---TYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKL---DVSQ 125
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
LT L+C N + ++ + L+ LD N+ + + + LTTLD S N
Sbjct: 126 NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180
Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
+ L ++ K L L D N+I+
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNIT 204
Score = 58.2 bits (141), Expect = 5e-09
Identities = 32/211 (15%), Positives = 55/211 (26%), Gaps = 48/211 (22%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L S L + L++ L L + + L +
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTT----LHCIQTDLLEIDLTHN----TQLIYFQAEGCR 286
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
K++ + L LD + L L+ L L L L
Sbjct: 287 --KIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTEL----------- 330
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
T+LD+SH + LK LS + ++ + L +
Sbjct: 331 ---TELDVSH--------------NTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEG 371
Query: 300 QIDVLEDHSFRALS-----TLSHLDLAHNRI 325
Q + + S + LD N +
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402
Score = 34.3 bits (79), Expect = 0.12
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L + N+ + + + L +LT C N + L+ + S
Sbjct: 211 NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK 255
Score = 32.4 bits (74), Expect = 0.49
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ L L + N+ + + ++ L L+C N I L+ +
Sbjct: 169 QTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDLNQNIQ 213
Score = 31.6 bits (72), Expect = 0.85
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++L L+ N+ +++ + L KLT L+C N++ L+
Sbjct: 84 NTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVSQNPL 128
Score = 31.6 bits (72), Expect = 0.93
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L L+ N+ + + ++ LT L+C N + ++ +
Sbjct: 105 LTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEIDVSHNTQ 149
Score = 31.2 bits (71), Expect = 1.3
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + + + ++ KL SLSC + I
Sbjct: 317 NPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF 354
Score = 31.2 bits (71), Expect = 1.4
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ N + + L +LT L C N++ ++ +
Sbjct: 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQ 234
Score = 30.4 bits (69), Expect = 2.2
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
+ L +L + + L+ KL L ++ ++ L
Sbjct: 296 NTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL 333
Score = 30.0 bits (68), Expect = 2.8
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L L N +++ L+ LT L+C N++ L+ +
Sbjct: 63 LTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLDVTPLTK 107
Score = 30.0 bits (68), Expect = 3.0
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++L L ++ + + + L LT L C N I L+ +N
Sbjct: 41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLDLSQNTN 86
Score = 30.0 bits (68), Expect = 3.1
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L + N + + ++ L KLT+L C + ++ +
Sbjct: 232 LTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 105 bits (263), Expect = 1e-24
Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 10/223 (4%)
Query: 140 GLSSPLQALGLPNNLLSVV-PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
L S L L +N LS + L NL L LSHN L + + +F + +L +LD
Sbjct: 36 SLPSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLG 257
LS N L TL + + L L VL L N + V A + + + L LS N ++ P+
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154
Query: 258 P-STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT--SLSCHHNQID----VLEDHSFR 310
+L L +L ++ N+ + L L L H+N ++ + + S
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHW 214
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
LS + + + L ++ +L + S A
Sbjct: 215 QYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWE 257
Score = 98.8 bits (246), Expect = 2e-22
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 5/158 (3%)
Query: 240 RSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
LDLSHN L+ L P RL++L L ++HN + + A + L L
Sbjct: 39 SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
N + L++ F L L L L +N IV V + ++ L L LS N + +LI
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 359 P---LKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
L L L L N + P +Y
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 93.8 bits (233), Expect = 7e-21
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 55 SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGK 113
SCP+ C C + L C+ + L + +SL +LLD + +N++ L
Sbjct: 11 SCPA----NCLCA-SNILSCSKQQ--LPNVPQSL-----PSYTALLDLSHNNLSRLRAEW 58
Query: 114 FLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172
+T LH L++S L IS AF+ + + L+ L L +N L + + L L+
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNHLHTLDEFLFSDL-QALEV 116
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD---CLAPLVTLRVLRLQGNRLT 229
L L +N + ++ +F+ ++ L L LS N++ + L L +L L N+L
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 230 VSVVAALQGLRSVT--DLDLSHN 250
+ LQ L + L L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199
Score = 47.1 bits (112), Expect = 1e-05
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ +L+ L ++ N ++ + L L L ++N I V++ ++F +
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Score = 44.8 bits (106), Expect = 6e-05
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
L +L+VL + +N V R A + +L L NQI +
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159
Score = 41.8 bits (98), Expect = 5e-04
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L++L L ++HN + + A + L L N + L++ FS+
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110
Score = 38.7 bits (90), Expect = 0.005
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC---HHNQIDVLEDHSFSN 691
++ L+ L ++ NQ S + +KL L N++ L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 106 bits (267), Expect = 3e-24
Identities = 68/298 (22%), Positives = 107/298 (35%), Gaps = 54/298 (18%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
L+ S +T LP +T LVI L ++ L+ L + N L+ +P
Sbjct: 45 LNVGESGLTTLPDCLPAHITT--LVIPDNNLTSLPAL----PPE-LRTLEVSGNQLTSLP 97
Query: 160 TS---------------ALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L L +L + NQL L L L +S N+L
Sbjct: 98 VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQL 153
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
+L L L N+LT S+ GL+ L +S N L +++P
Sbjct: 154 ASLPAL----PSELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQL------ASLPTL 199
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
S L L +N+ +S+ A L L N++ L S L L ++ N
Sbjct: 200 PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGN 251
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY 381
R+ ++ S L +L + N L L + + L S + L+ N +S
Sbjct: 252 RLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 304
Score = 99 bits (249), Expect = 4e-22
Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 33/234 (14%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L + N L+ +P L P L L +S NQL L S L L N+L
Sbjct: 123 LCKLWIFGNQLTSLP-----VLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL 173
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
+L L+ L + N+L S+ L L +N L +++P
Sbjct: 174 TSLPML----PSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRL------TSLPAL 219
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
S LK L ++ N+ +S+ +L L N++ L S L L + N
Sbjct: 220 PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRN 271
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
++ + SL HLS+ TT++L N L T + + S M
Sbjct: 272 QLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324
Score = 97.7 bits (243), Expect = 3e-21
Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 32/215 (14%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L L++ + L L + +++ L + N L +L LR L + G
Sbjct: 38 LNNGNAVLNVGESGLTTLPDCLPAHITT---LVIPDNNLTSLPAL----PPELRTLEVSG 90
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
N+LT S+ GL ++ L +P S L L I NQ +S+
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLTHL------PALP--SGLCKLWIFGNQLTSLP---- 137
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
L LS NQ+ L S L L +N++ ++ S L L +S
Sbjct: 138 VLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVS 189
Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
N L +L L +L +N ++ P
Sbjct: 190 DNQLASLPTL----PSELYKLWAYNNRLTSLPALP 220
Score = 81.1 bits (200), Expect = 4e-16
Identities = 70/316 (22%), Positives = 115/316 (36%), Gaps = 51/316 (16%)
Query: 71 TLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGEL 130
TL + N+ L ++ GL +S+ L+++ LP L L I +L
Sbjct: 85 TLEVSGNQ--LTSLPVLPPGLL---ELSIFSNPLTHLPALPSG------LCKLWIFGNQL 133
Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
++ L LQ L + +N L+ +P L L +L +NQL L
Sbjct: 134 TSLPV-----LPPGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTSLPML---- 179
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
S L L +S N+L +L L L NRLT S+ A GL+ L +S N
Sbjct: 180 PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGN 231
Query: 251 LLAG-PLGPS-------------TVPR-LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 295
L P+ PS ++P S L LS+ NQ + + L L T+++
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES-LIHLSSETTVN 290
Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
N + + R +++ R ++ L + ++L +
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREG 348
Query: 356 LITPLKSLQELRLDDN 371
P +DN
Sbjct: 349 EPAPADRWHMFGQEDN 364
Score = 39.9 bits (93), Expect = 0.003
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
R V + L++ + L L L + L + DN+++ P
Sbjct: 26 GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTSLPALP 80
Score = 32.2 bits (73), Expect = 0.67
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L S LK L ++ N+ +S+ L SLS + NQ+ L
Sbjct: 239 LPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRL 276
Score = 31.4 bits (71), Expect = 1.3
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 641 TILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L S L L I NQ +S+ L LS NQ+ L
Sbjct: 117 PALPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASL 156
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L+ LS++ NQ +S+ A +L L ++NQ+ L
Sbjct: 139 LPPGLQELSVSDNQLASL----PALPSELCKLWAYNNQLTSL 176
Score = 31.0 bits (70), Expect = 1.5
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L S L LS+ NQ + + L L T+++ N + +
Sbjct: 259 LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALRE 306
Score = 31.0 bits (70), Expect = 1.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L S L+ LS++ NQ +S+ +L L ++N++ L
Sbjct: 179 LPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSL 216
Score = 30.6 bits (69), Expect = 2.0
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L S LK L ++ N+ +S+ +L L N++ L
Sbjct: 219 LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSL 256
Score = 29.5 bits (66), Expect = 5.0
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 636 KLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
+L + L S L L +NQ +S+ L LS NQ+ L
Sbjct: 152 QLASLPALPSELCKLWAYNNQLTSL----PMLPSGLQELSVSDNQLASL 196
Score = 29.1 bits (65), Expect = 5.6
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L + + L I N +S+ A +L +L NQ+
Sbjct: 59 LPAHITTLVIPDNNLTSL----PALPPELRTLEVSGNQL 93
Score = 28.7 bits (64), Expect = 7.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L+ L ++ NQ +S+ GL +L+ S + L
Sbjct: 79 LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLTHLPAL 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 104 bits (261), Expect = 1e-23
Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 31/246 (12%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L LS +P + L P + L+++ N L L +SL +LD N+L
Sbjct: 61 FSELQLNRLNLSSLPDN----LPPQITVLEITQNALISLPEL----PASLEYLDACDNRL 112
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-R 263
TL + +L+ L + N+LT + L ++ +N L + +P
Sbjct: 113 STLPEL----PASLKHLDVDNNQLT-MLPELPALLEY---INADNNQL------TMLPEL 158
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR---ALSTLSHLDL 320
+SL+VLS+ +NQ + + + L +L N ++ L R + T
Sbjct: 159 PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
NRI + ++ L T+ L N L + ++ ++ + + SM
Sbjct: 215 RENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
Query: 381 YVGFNT 386
Sbjct: 274 NTLHRP 279
Score = 103 bits (258), Expect = 3e-23
Identities = 45/260 (17%), Positives = 90/260 (34%), Gaps = 33/260 (12%)
Query: 126 SSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
+ F + LP + + L L L+ L L +
Sbjct: 18 FYNTISGTYADYFSAWDK-WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD 76
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
+ L+++ N L++L + +L L NRL+ ++ L+ L
Sbjct: 77 NLPP---QITVLEITQNALISLPEL----PASLEYLDACDNRLS-TLPELPASLKH---L 125
Query: 246 DLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
D+ +N L + +P L + L+ ++ +NQ + + L LS +NQ+ L
Sbjct: 126 DVDNNQL------TMLPELPALLEYINADNNQLTML----PELPTSLEVLSVRNNQLTFL 175
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT----LDLSHNFLRALTQDLITPL 360
+ +L LD++ N + ++ A + N + + + I L
Sbjct: 176 PE----LPESLEALDVSTNLLESLP-AVPVRNHHSEETEIFFRCRENRITHI-PENILSL 229
Query: 361 KSLQELRLDDNDISMEPECI 380
+ L+DN +S
Sbjct: 230 DPTCTIILEDNPLSSRIRES 249
Score = 86.2 bits (213), Expect = 9e-18
Identities = 50/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%)
Query: 85 SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
++ + E+ +L + L + L L ++ L ++ D L
Sbjct: 27 ADYFSAWDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSSLPDN----LPPQ 81
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ L + N L +P L +L+ LD N+L L +SL LD+ N+L
Sbjct: 82 ITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPEL----PASLKHLDVDNNQL 132
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
L + L + N+LT + L L + +N L + +P
Sbjct: 133 TMLPEL----PALLEYINADNNQLT-MLPELPTSLEV---LSVRNNQL------TFLPEL 178
Query: 264 LSSLKVLSIAHNQFSSVRR--GALAGLDKL-TSLSCHHNQIDVLEDHSFRALSTLSHLDL 320
SL+ L ++ N S+ ++ C N+I + + + +L + L
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIIL 237
Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
N + + SL+ + + T + L +
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286
Score = 32.3 bits (73), Expect = 0.57
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 636 KLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
+L L +SL+VLS+ +NQ + + + L +L N ++ L
Sbjct: 151 QLTMLPELPTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESL 195
Score = 29.6 bits (66), Expect = 4.0
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L +SL+ L N+ S++ L L +NQ+ +L
Sbjct: 98 LPASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQLTML 135
Score = 29.2 bits (65), Expect = 5.6
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L +SLK L + +NQ + + L ++ +NQ+ +L
Sbjct: 118 LPASLKHLDVDNNQLTML----PELPALLEYINADNNQLTML 155
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 98.2 bits (245), Expect = 2e-23
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L+ +PT+ L + + L N + + +F L +DLS N++ L+ D
Sbjct: 23 LTEIPTN----LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L +L L L GN++T L S L SL++L +
Sbjct: 79 LRSLNSLVLYGNKITE-------------------------LPKSLFEGLFSLQLLLLNA 113
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
N+ + +R A L L LS + N++ + +F L + + LA N
Sbjct: 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 91.2 bits (227), Expect = 4e-21
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
++T++ L N + + P L+ + +++NQ S + A GL L SL + N+
Sbjct: 33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
I L F L +L L L N+I + + L NL L L N L+ + + +PL
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 361 KSLQELRLDDN 371
+++Q + L N
Sbjct: 152 RAIQTMHLAQN 162
Score = 81.6 bits (202), Expect = 1e-17
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P+ +P ++ + + N + GA + KL + +NQI L +F+ L +L+
Sbjct: 27 PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L L N+I + + L +L L L+ N + L D L +L L L DN +
Sbjct: 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144
Query: 378 E 378
+
Sbjct: 145 K 145
Score = 55.4 bits (134), Expect = 9e-09
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 26/116 (22%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
P F +L+ LV+ ++ + F GL +L
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGL--------------------------FSL 106
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
L L+ N++ L +F+ L +LN L L NKL T+++ +PL ++ + L N
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 41.6 bits (98), Expect = 3e-04
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L SL L + N+ + + + GL L L + N+I+ L +F +
Sbjct: 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
Score = 40.8 bits (96), Expect = 6e-04
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L SL++L + N+ + +R A L L LS + N++ + +FS
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Score = 37.7 bits (88), Expect = 0.006
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L+ + +++NQ S + A GL L SL + N+I L F
Sbjct: 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
Score = 36.5 bits (85), Expect = 0.017
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
++ + + N + GA + KL + +NQI L +F
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Score = 34.6 bits (80), Expect = 0.070
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L +L +LS+ N+ ++ +G + L + ++ N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 102 bits (257), Expect = 2e-23
Identities = 69/347 (19%), Positives = 121/347 (34%), Gaps = 70/347 (20%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
+P +K++ Y P + +S + + + L+ L +SS
Sbjct: 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85
Query: 128 --GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTS---------------ALAPLAPNL 170
+ L++L N L+ +P AL+ L P L
Sbjct: 86 LPELPPH------------LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
+ L +S+NQL KL + S L +D+ N L L +L + N+L
Sbjct: 134 EYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE 187
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLD 289
+ LQ L +T + +N L +P SL+ + +N + L L
Sbjct: 188 --LPELQNLPFLTAIYADNNSL------KKLPDLPLSLESIVAGNNILEELP--ELQNLP 237
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
LT++ +N + L D +L L++ N + + +LT LD+S N
Sbjct: 238 FLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIF 289
Query: 350 RALTQ----------------DLITPLKSLQELRLDDNDISMEPECI 380
L++ L SL+EL + +N + P
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP 336
Score = 95.4 bits (238), Expect = 5e-21
Identities = 45/276 (16%), Positives = 90/276 (32%), Gaps = 33/276 (11%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
T L L + + + +K+ ++ A + + L
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
L+L++ L L L L S N L L + L +L V
Sbjct: 71 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKA 125
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP---RLSSLKVLSIAHNQFSSVRRGA 284
L+ + L +S+N L +P S LK++ + +N +
Sbjct: 126 LSDL-------PPLLEYLGVSNNQL------EKLPELQNSSFLKIIDVDNNSLKKL---- 168
Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
L ++ +NQ++ L + L L+ + +N + + +L ++
Sbjct: 169 PDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVA 222
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
+N L L + + L L + D+N + P+
Sbjct: 223 GNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLP 256
Score = 91.6 bits (228), Expect = 1e-19
Identities = 55/277 (19%), Positives = 100/277 (36%), Gaps = 52/277 (18%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L + + +L+ + + L L A+ NN L +P L +L+ + +N
Sbjct: 175 LEFIAAGNNQLEELPE--LQNLPF-LTAIYADNNSLKKLP-----DLPLSLESIVAGNNI 226
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
L +L + L L + N L TL +L L ++ N LT + Q L
Sbjct: 227 LEELP--ELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLT-DLPELPQSL 279
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
LD+S N+ S + L +L L+ + N+ S+ L L+ +
Sbjct: 280 TF---LDVSENIF------SGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSN 326
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT----- 353
N++ L L L + N + V NL L + +N LR
Sbjct: 327 NKLIELPAL----PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPES 378
Query: 354 ----------QDLITPLKSLQELRLDDNDISMEPECI 380
++ ++L++L ++ N + P+
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415
Score = 85.8 bits (213), Expect = 8e-18
Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 47/280 (16%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
+ +++ LP ++L +V + L+ + + + L + NNLL +P
Sbjct: 200 IYADNNSLKKLPD---LPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLP 253
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
L P+L+ L++ N L L SL FLD+S N LS+ L
Sbjct: 254 -----DLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSEL----PPNLY 300
Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR-LSSLKVLSIAHNQFS 278
L N + S+ +L++S+N L +P L+ L + N +
Sbjct: 301 YLNASSNEIRSL----CDLPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLA 350
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
V L L +N + D ++ L + ++ + V N
Sbjct: 351 EVP----ELPQNLKQLHVEYNPLREFPD----IPESVEDLRM-NSHLAEVP----ELPQN 397
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
L L + N LR +S+++LR++ + E
Sbjct: 398 LKQLHVETNPLREFPDIP----ESVEDLRMNSERVVDPYE 433
Score = 42.3 bits (100), Expect = 4e-04
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 18/99 (18%)
Query: 145 LQALGLPNNLLSVVPTS--------------ALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
L+ L + N L P + L NL +L + N L + +
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---- 414
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
S+ L ++ +++ + L + +
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 30.0 bits (68), Expect = 2.9
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 641 TILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
+ L L+ L +++NQ + L L + +N + L
Sbjct: 127 SDLPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKL 168
Score = 30.0 bits (68), Expect = 3.2
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 687
L SL+ + +N + L L LT++ +N + L D
Sbjct: 213 LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDL 255
Score = 29.2 bits (66), Expect = 5.1
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L SL+ ++ +NQ + L L LT++ +N + L
Sbjct: 171 LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL 210
Score = 29.2 bits (66), Expect = 5.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L SL+ L++++N+ + A +L L N + +
Sbjct: 315 LPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV 352
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 103 bits (257), Expect = 4e-23
Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 11/236 (4%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLA----PNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
P++ L + N ++ + +L + + + + + +N
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLG 257
LS + + C + L N T SV L+ + L L N L
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRAL-STL 315
+SSL+ L ++ N +S A + + L+ N L FR L +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKV 452
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
LDL +NRI+++ + HL L L+++ N L+++ + L SLQ + L DN
Sbjct: 453 KVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 89.2 bits (221), Expect = 1e-18
Identities = 54/247 (21%), Positives = 90/247 (36%), Gaps = 14/247 (5%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N L+ VP L P L LS N + +L LS L L LS+N++ +L
Sbjct: 40 NRNLTHVP----KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L L + NRL ++ + + S+ LDLS N L+ L L
Sbjct: 96 FLFNQDLEYLDVSHNRLQ-NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152
Query: 272 IAHNQFSSVRRGALAGLD------KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
++ +F + +A L L S + + L+ + L + H + +
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212
Query: 326 VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFN 385
V +S +L HL L+ + L+ + L L + L + I +C F
Sbjct: 213 VNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 386 TMDLELI 392
+
Sbjct: 272 FFWPRPV 278
Score = 88.4 bits (219), Expect = 2e-18
Identities = 53/230 (23%), Positives = 83/230 (36%), Gaps = 20/230 (8%)
Query: 87 SLRGLEPDERVSLLDCTLSNVTVL-----------PGKFLEGVTLHGLVISSGELKNISD 135
++ E + + L ++ + + ++ ++S + I
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK--GLSS 193
SS L N+ + + L L L L N L + +SS
Sbjct: 347 VCPPSPSS-FTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSS 404
Query: 194 LNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
L LD+S N L + + D ++ VL L N LT SV L V LDL +N +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI 462
Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
P V L +L+ L++A NQ SV G L L + H N D
Sbjct: 463 MSI--PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Score = 80.7 bits (199), Expect = 5e-16
Identities = 39/272 (14%), Positives = 84/272 (30%), Gaps = 17/272 (6%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
L L +S+ + + + L L L + + T +L N L L +
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP--NTTVLHLVFHP 205
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL----------APLVTLRVLRLQGNRLT 229
+++L L LS KL + L L+ + + ++
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPL----GPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
+ R V L++ + + + + L SL + + + F +
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
+ ++ + + + S+ + L+ N + L L TL L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
N L+ + K++ L D ++
Sbjct: 386 RNGLKNF-FKVALMTKNMSSLETLDVSLNSLN 416
Score = 79.1 bits (195), Expect = 2e-15
Identities = 46/283 (16%), Positives = 87/283 (30%), Gaps = 20/283 (7%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
L L +S ++++ F+ L+ L + +N L + + +L
Sbjct: 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-LEYLDVSHNRLQNISCCPM----ASL 123
Query: 171 DRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV-LRLQGNRL 228
LDLS N L F L+ L FL LS K L +A L + L L +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183
Query: 229 TVSVVAALQGLRSVT------DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
+LQ + L + + +LS++K+ + +
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 283 GALAG--LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-----AVSGASLAH 335
G L +T ++ F + +L++ + I S
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
L +L + + + L + + L +D
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Score = 71.8 bits (176), Expect = 3e-13
Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 17/286 (5%)
Query: 104 LSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGL-PNNLLSVVPTSA 162
+ +LP L + L + S +K + ++ + L PN+L SV +
Sbjct: 158 FRQLDLLPVAHLHLSCIL-LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 163 LAPLAP-NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------ 215
+ L L + L+ +L + L+++ + T + +
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 216 ----VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
+ + L + + L+S+ + + + + + + +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK-EALYSVFAEMNIKM 335
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
++ + + T L+ N L L L L N +
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 332 S--LAHLSNLTTLDLSHNFLRALTQDLITPL-KSLQELRLDDNDIS 374
+ ++S+L TLD+S N L + D +S+ L L N ++
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Score = 64.5 bits (157), Expect = 6e-11
Identities = 53/322 (16%), Positives = 96/322 (29%), Gaps = 44/322 (13%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
FL L L +S L+NIS + L+ L L N V+P L
Sbjct: 93 FHVFLFNQDLEYLDVSHNRLQNISCCPM----ASLRHLDLSFNDFDVLPVCKEFGNLTKL 148
Query: 171 DRLDLSHNQLYKLENTSFKGLS-SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
L LS + +L+ L S LDL + + L T L L + +
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNS 207
Query: 230 VSVVAALQGLRSVTDLDLS------------HNLLAGPLGPSTVPRL------------- 264
+ V + ++ L LS L+ T+ +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 265 --------SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC-----HHNQIDVLEDHSFRA 311
++ L+I + + + S + ++ +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ ++ L+ + + S+ T L+ + N + LK LQ L L N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 372 DISMEPECIYVGFNTMDLELIY 393
+ + + N LE +
Sbjct: 388 GLKNFFKVALMTKNMSSLETLD 409
Score = 36.8 bits (85), Expect = 0.025
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L K LS++ N S +R ++ L +L L HN+I L+ H F
Sbjct: 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98
Score = 36.0 bits (83), Expect = 0.047
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS L+VL ++HN+ S+ L L HN++ + ++
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS 122
Score = 35.2 bits (81), Expect = 0.084
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
SS L+ N F+ + L +L +L N + +
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
Score = 34.5 bits (79), Expect = 0.11
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L +L+ L++A NQ SV G L L + H N D
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Score = 34.1 bits (78), Expect = 0.16
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +KVL + +N+ S+ + L L L+ NQ+ + D F
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDR 495
Score = 30.6 bits (69), Expect = 1.9
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FSN 691
L+ L ++HN+ ++ + L L N DVL F N
Sbjct: 99 NQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGN 144
Score = 30.2 bits (68), Expect = 2.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQI 681
++SL+ L ++ N F + L KLT L +
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 29.1 bits (65), Expect = 6.6
Identities = 4/49 (8%), Positives = 13/49 (26%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+ + + + ++ + + T L+ N S
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375
Score = 28.7 bits (64), Expect = 7.0
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L + N + + AL ++SL ++ L H++
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDR 422
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 94.4 bits (236), Expect = 1e-22
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
L + L Y +L L + L L+ LT + AA+ L + L +
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELT-RLKAAVGELPEKSKLQEIYQ 60
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
L + V L L + + + ++ A+ L + + L + ++ L+ +
Sbjct: 61 ELTRL--KAAVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKA-AVG 116
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
L S L + + + A++ L + + + L L
Sbjct: 117 ELPEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDL 157
Score = 90.2 bits (225), Expect = 3e-21
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 7/166 (4%)
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L+ LT + AA+ L + L + L + V L L +
Sbjct: 3 LPEKSKLQEIYQELT-RLKAAVGELPEKSKLQEIYQELTRL--KAAVGELPEKSKLQEIY 59
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
+ + ++ + L + + L + ++ L+ + L S L + + + A++
Sbjct: 60 QELTRLKAA-VGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELK-AAVG 116
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
L + L + L L + L + + +++
Sbjct: 117 ELPEKSKLQEIYQELTQLKAA-VGELPDQSKQQQIYQELTDLKTAF 161
Score = 72.1 bits (178), Expect = 5e-15
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L L+ + + + L P +L + +L +L + L + L Y +L
Sbjct: 29 KSKLQEIYQELTRLKAA-VGEL-PEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQEL 85
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
L + L L+ LT + AA+ L + L + L + V L
Sbjct: 86 TRLK-AAVGELPEKSKLQEIYQELT-ELKAAVGELPEKSKLQEIYQELTQL--KAAVGEL 141
Query: 265 SSLKVLSIAHNQFSSV 280
+ + + +
Sbjct: 142 PDQSKQQQIYQELTDL 157
Score = 68.6 bits (169), Expect = 9e-14
Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
L L + + + ++ A+ L + + L + ++ L+ + L S L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY 59
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
+ + A++ L + L + L L + L +L+ +++ +
Sbjct: 60 QELTRLK-AAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTELKAAV 115
Score = 30.1 bits (69), Expect = 1.2
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + + + A+ L + + L + ++ L
Sbjct: 72 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTEL 111
Score = 30.1 bits (69), Expect = 1.2
Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + ++ A+ L + + ++ L
Sbjct: 118 LPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Score = 30.1 bits (69), Expect = 1.4
Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + ++ + L + + L + ++ L
Sbjct: 49 LPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTRL 88
Score = 27.8 bits (63), Expect = 7.4
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + ++ A+ L + + L + ++ L
Sbjct: 3 LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRL 42
Score = 27.8 bits (63), Expect = 8.1
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + ++ A+ L + + L + ++ L
Sbjct: 95 LPEKSKLQEIYQELTELKA-AVGELPEKSKLQEIYQELTQL 134
Score = 27.8 bits (63), Expect = 8.6
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 684
L L + + + ++ A+ L + + L + ++ L
Sbjct: 26 LPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRL 65
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 92.8 bits (231), Expect = 1e-21
Identities = 31/131 (23%), Positives = 56/131 (42%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
+L L++N +L L+ ++ ++N+ + + GA G + + N+
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
++ ++ F+ L +L L L NRI V S LS++ L L N + + L
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 361 KSLQELRLDDN 371
SL L L N
Sbjct: 153 HSLSTLNLLAN 163
Score = 85.5 bits (212), Expect = 4e-19
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
+ L L NN +V+ + + P L +++ S+N++ +E +F+G S +N + L
Sbjct: 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
+ N+L + L +L+ L L+ NR+T +G
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITC-------------------------VGND 123
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+ LSS+++LS+ NQ ++V GA L L++L+ N +
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 77.8 bits (192), Expect = 2e-16
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
P +P L + +N+F+ + G L +L ++ +N+I +E+ +F S ++
Sbjct: 27 PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
+ L NR+ V L +L TL L N + + D L S++ L L DN I+
Sbjct: 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Query: 377 PE 378
Sbjct: 145 AP 146
Score = 75.1 bits (185), Expect = 2e-15
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 112 GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171
G F + L + S+ ++ +I +GAF G S + + L +N L V L +L
Sbjct: 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNRLENVQHKMFKGL-ESLK 108
Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
L L N++ + N SF GLSS+ L L N++ T++ L +L L L N
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 43.1 bits (102), Expect = 1e-04
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S + + + N+ +V+ GL+ L +L N+I + + SF
Sbjct: 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127
Score = 41.6 bits (98), Expect = 4e-04
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L SLK L + N+ + V + GL + LS + NQI + +F
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Score = 38.9 bits (91), Expect = 0.002
Identities = 8/48 (16%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ ++ ++N+ + + GA G + + N+++ ++ F
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103
Score = 37.3 bits (87), Expect = 0.008
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
LSS+++LS+ NQ ++V GA L L++L+ N +
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 95.0 bits (236), Expect = 2e-21
Identities = 58/276 (21%), Positives = 99/276 (35%), Gaps = 28/276 (10%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG------KFLEGVTLH 121
L + L+ ++DL ++ ++ L SL T+ + + L L
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSL------SLKRLTVRAARIPSRILFGALRVLGISGLQ 98
Query: 122 GLVISSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVP---TSALAPLAPNLDRLDLSH 177
L + + E+ + + + P L L L N + L P L L ++
Sbjct: 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMT----LSQDCLAPLVTLRVLRLQGNRLT---V 230
+ +L+ LDLS N + +S C TL+VL L+ +
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
A + LDLSHN L G + S L L+++ V +G A K
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---K 275
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
L+ L +N++D L + +L L N +
Sbjct: 276 LSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFL 309
Score = 94.6 bits (235), Expect = 2e-21
Identities = 62/314 (19%), Positives = 106/314 (33%), Gaps = 21/314 (6%)
Query: 73 RCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKN 132
C+ N SD S V L S +L E I +
Sbjct: 12 SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL--S 69
Query: 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLS 192
+ P + L +L + L L+ L+++ L + L+
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQEL-----TLENLEVTGTAPPPLLEATGPDLN 124
Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVT-LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
LN ++S+ + L L+VL + ++ +++ LDLS N
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184
Query: 252 LAG--PLGPSTVP-RLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQI-DVL 304
G L + P + +L+VL++ + + V A +L L HN + D
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
S S L+ L+L+ + V + L+ LDLS+N L L +
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVG 299
Query: 365 ELRLDDNDISMEPE 378
L L N ++ E
Sbjct: 300 NLSLKGNPF-LDSE 312
Score = 75.3 bits (185), Expect = 6e-15
Identities = 46/237 (19%), Positives = 69/237 (29%), Gaps = 13/237 (5%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
L L R+D + + L L + + + L+ L L+
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 226 NRLT--VSVVAALQGLRSVTDLDLSHNLLAGP---LGPSTVPRLSSLKVLSIAHNQFSSV 280
+T + L+L + A L LKVLSIA +
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164
Query: 281 RRGALAGLDKLTSLSCHHNQI-------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
+ L++L N L F L L+ + V A
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224
Query: 334 AHLSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDNDISMEPECIYVGFNTMDL 389
A L LDLSHN LR L L L + P+ + + +DL
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281
Score = 53.4 bits (128), Expect = 8e-08
Identities = 31/206 (15%), Positives = 62/206 (30%), Gaps = 28/206 (13%)
Query: 190 GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV---VAALQGLRSVTDLD 246
G S L + + ++L+ L ++ R+ + + G+ + +L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 247 LSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
L + + G P + L +L++ + ++ A L +L
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWA----TRDAWLAELQQWL---------- 147
Query: 306 DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT----PLK 361
L L +A + S + L+TLDLS N +
Sbjct: 148 ------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201
Query: 362 SLQELRLDDNDISMEPECIYVGFNTM 387
+LQ L L + +
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAAR 227
Score = 29.5 bits (66), Expect = 3.6
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 624 DINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQID 682
+ ++ A L+ L ++HN + +L SL+ +
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
Query: 683 VLEDHSFSN 691
+ +
Sbjct: 267 QVPKGLPAK 275
Score = 28.7 bits (64), Expect = 6.6
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L LKVLSIA + + L++L N
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Score = 28.7 bits (64), Expect = 7.2
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
S L L+++ V +G A KL+ L +N++D
Sbjct: 251 WPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE 294
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 90.9 bits (226), Expect = 1e-20
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
++LDL L L + +F+GL+ L +L+L YN+L TLS L L L L N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLD 289
S+ P V L+ L L + NQ S+ G L
Sbjct: 97 ----------SL---------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
KL L + NQ+ + +F L+ L L L+ N++ +V + L L T+ L N
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 78.6 bits (194), Expect = 2e-16
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
+ L L + L+ + + L L L+L +NQL L F L+ L L L+ N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP--- 262
+L L L L L GN+L L + +L L+ N L ++P
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL------QSIPAGA 150
Query: 263 --RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 75.9 bits (187), Expect = 2e-15
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
LDL LA L +T L+ L L++ +NQ ++ G L +L +L +NQ+
Sbjct: 38 EKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 362
L F L+ L L L N++ ++ L+ L L L+ N L+++ L +
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 363 LQELRLDDNDISMEPE 378
LQ L L N + P
Sbjct: 157 LQTLSLSTNQLQSVPH 172
Score = 47.8 bits (114), Expect = 4e-06
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 100 LDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
L + + LP G F L L + +LK++ G F L+ L+ L L N L +
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQSI 146
Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
P A L NL L LS NQL + + +F L L + L N
Sbjct: 147 PAGAFDKLT-NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 36.2 bits (84), Expect = 0.021
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 616 IPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 675
IP ++ D+ + L+ L L++ +NQ ++ G L +L +L
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRG---LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89
Query: 676 CHHNQIDVLEDHSF 689
+NQ+ L F
Sbjct: 90 LANNQLASLPLGVF 103
Score = 35.4 bits (82), Expect = 0.037
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ LK L + NQ S+ GA L L +LS NQ+ + +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Score = 31.6 bits (72), Expect = 0.63
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 31.6 bits (72), Expect = 0.66
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L+ L L +A+NQ +S+ G L +L L NQ+ L F
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Score = 31.6 bits (72), Expect = 0.72
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L+ L L + NQ S+ G L KL L + NQ+ + +F
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 92.3 bits (230), Expect = 1e-20
Identities = 58/314 (18%), Positives = 106/314 (33%), Gaps = 30/314 (9%)
Query: 79 SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAF 138
+ L + L + N + + LK +D
Sbjct: 23 TALRPYHDVLSQWQ------RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76
Query: 139 IGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
AL L + L P L+ +L + + L +L + + + + L L
Sbjct: 77 DATQPGRVALELRSVPLPQFPDQ-AFRLS-HLQHMTIDAAGLMELPD-TMQQFAGLETLT 133
Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQG-NRLT--------VSVVAALQGLRSVTDLDLSH 249
L+ N L L +A L LR L ++ LT QGL ++ L L
Sbjct: 134 LARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHS 308
+ P+++ L +LK L I ++ S++ A+ L KL L +
Sbjct: 193 TGIRSL--PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPP-I 248
Query: 309 FRALSTLSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQE 365
F + L L L + ++ + + L+ L LDL L++ LI L +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGC--VNLSRLPSLIAQLPANCI 305
Query: 366 LRLDDNDISMEPEC 379
+ + + + +
Sbjct: 306 ILVPPHLQAQLDQH 319
Score = 78.4 bits (194), Expect = 7e-16
Identities = 51/283 (18%), Positives = 92/283 (32%), Gaps = 21/283 (7%)
Query: 86 ESLRGLEPDERVSLLDCTLSNVTVLPG--KFLEGVTLHGLVISSGELKNISDGAFIGLSS 143
S + T + + L + S L D S
Sbjct: 47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ--AFRLS 104
Query: 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY-N 202
LQ + + L +P + + L+ L L+ N L L S L+ L L +
Sbjct: 105 HLQHMTIDAAGLMELPDT-MQQF-AGLETLTLARNPLRALPA-SIASLNRLRELSIRACP 161
Query: 203 KLMTL--------SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254
+L L + LV L+ LRL+ + S+ A++ L+++ L + ++ L+
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALS 313
L + L L+ L + G L L + + L L+
Sbjct: 221 -L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLT 277
Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
L LDL ++ + +A L + + + L Q
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
Score = 63.4 bits (155), Expect = 6e-11
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 9/168 (5%)
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
M S L QG+ L + + D +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-----RWHSAWRQANS 55
Query: 265 SSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
++ ++ + + A +L + D LS L H+ +
Sbjct: 56 NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAA 114
Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
++ + ++ + L TL L+ N LRAL I L L+EL +
Sbjct: 115 GLMELP-DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRAC 160
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 86.9 bits (216), Expect = 8e-20
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 9/157 (5%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L + L N ++ + + + N+ L +++ GLS+L L + +
Sbjct: 46 LTYITLANINVTDL--TGIEYA-HNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDV 100
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
+ L+ L +L +L + + S++ + L V +DLS+N + L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTL 158
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
LK L+I + R + KL L I
Sbjct: 159 PELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193
Score = 86.9 bits (216), Expect = 9e-20
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
+L + L++ + L + ++ L ++ + ++ L L LR+ G
Sbjct: 44 NSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKD 99
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN-QFSSVRRGALA 286
+T + L GL S+T LD+SH+ + + L + + +++N + + L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM--PLK 156
Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
L +L SL+ + + L+ L I
Sbjct: 157 TLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193
Score = 86.2 bits (214), Expect = 2e-19
Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 34/208 (16%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
N + ++SL ++ L+ + L+ + ++ L +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
T + + P+ LS+L+ L I +S + L+G
Sbjct: 78 AT----------------NYN------PISG-----LSNLERLRIMGKDVTSDKIPNLSG 110
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASLAHLSNLTTLDLSH 346
L LT L H+ D L ++ +DL++N I + L L L +L++
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF 168
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDIS 374
+ + I L +L I
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIG 194
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
LS+L+ L I +S + L+GL LT L H+ D +
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Score = 36.1 bits (84), Expect = 0.018
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
L LK L+I + R + KL L I
Sbjct: 158 LPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193
Score = 32.6 bits (75), Expect = 0.28
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
++K L+I + ++ ++GL L L +
Sbjct: 65 AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDV 100
Score = 31.5 bits (72), Expect = 0.56
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L+SL +L I+H+ + L K+ S+ +N
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Score = 29.9 bits (68), Expect = 1.7
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 644 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L + + +++N + + L L +L SL+ + +
Sbjct: 135 LPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR 175
Score = 29.5 bits (67), Expect = 2.5
Identities = 4/42 (9%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
++SL +++A+ + + + + L+ ++
Sbjct: 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 86.9 bits (216), Expect = 3e-18
Identities = 56/276 (20%), Positives = 98/276 (35%), Gaps = 49/276 (17%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE----NTSFKGLSSLNF 196
+S +Q+L + LS + L PL + L L + +++ + +L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTV----SVVAALQGLRSVTDLDL 247
L+L N+L + Q P ++ L LQ LT + + L+ L ++ +L L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 248 SHNLLAGPLGPSTVPRLS--------SLKVLSIAHNQFSSVRRGALA----GLDKLTSLS 295
S N LG + + L L+ L + + S+ LA L+
Sbjct: 121 SDN----LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 296 CHHNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HLSNLTTLD 343
+N I + R L L L L + + + L ++L L
Sbjct: 177 VSNNDI---NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 344 LSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 374
L N L L L+ P L+ L + + I+
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269
Score = 86.9 bits (216), Expect = 3e-18
Identities = 63/278 (22%), Positives = 95/278 (34%), Gaps = 53/278 (19%)
Query: 145 LQALGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQL----YKLENTSFKGLSSLNF 196
+ L + NN ++ L L+ L L + + +SL
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTDLDL 247
L L NKL L L P LR L + +T + L+ S+ +L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 248 SHNLLAGPLGPSTVPRLS--------SLKVLSIAHNQFSSVRRGALA-GLDK---LTSLS 295
+ N LG L L+ L + F++ + L + L L
Sbjct: 292 AGN----ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347
Query: 296 CHHNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HLSNLTTLD 343
+N++ ED R L L L LA + S +SLA +L LD
Sbjct: 348 ISNNRL---EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404
Query: 344 LSHNFL-----RALTQDLITPLKSLQELRLDDNDISME 376
LS+N L L + + P L++L L D S E
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442
Score = 83.1 bits (206), Expect = 6e-17
Identities = 60/276 (21%), Positives = 89/276 (32%), Gaps = 49/276 (17%)
Query: 145 LQALGLPNNLLSVVPTSALAPLA----PNLDRLDLSHNQLYKLENTSF----KGLSSLNF 196
LQ L L +NLL L L++L L + L +
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTDLDL 247
L +S N + L Q L L+L+ +T + + S+ +L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 248 SHNLL----AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG------ALAGLDKLTSLSCH 297
N L L P + S L+ L I ++ +G L + L LS
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLA 292
Query: 298 HNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLS 345
N++ D R L L L + A + + L L +S
Sbjct: 293 GNEL---GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349
Query: 346 HNFL-----RALTQDLITPLKSLQELRLDDNDISME 376
+N L R L Q L P L+ L L D D+S
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385
Score = 59.6 bits (145), Expect = 1e-09
Identities = 52/255 (20%), Positives = 85/255 (33%), Gaps = 56/255 (21%)
Query: 145 LQALGLPNNLLSVVPTSALAP--LAPN--LDRLDLSHNQLYKLENTSFKGLS-------S 193
L+ L L +N L V + L P L P+ L L + + L S
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI---TAKGCGDLCRVLRAKES 285
Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTD 244
L L L+ N+L L + L P L L ++ T + L R + +
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 245 LDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
L +S+N L L S L+VL +A S + L +
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD------SSCSSLAA------- 392
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
+ A +L LDL++N + + + + L L L + +D
Sbjct: 393 -------TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445
Query: 356 LITPL----KSLQEL 366
+ L SL+ +
Sbjct: 446 RLQALEKDKPSLRVI 460
Score = 46.9 bits (112), Expect = 1e-05
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 291 LTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLS 345
+ SL ++ D L + L + ++ L L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 346 HNFL-----RALTQDLITPLKSLQELRLDDNDISME 376
N L + Q L TP +Q+L L + ++
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 84.5 bits (210), Expect = 6e-18
Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 28/250 (11%)
Query: 139 IGLSSPLQALGLPNNLLSVVPT--SALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLN 195
+ + L L L S+LA L P L+ L + N L + L+ L+
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 196 FLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
+L +++ + LSQ + TL L N L+ ++ ++ L ++ + N
Sbjct: 105 YLYITHTNVSGAIPDFLSQ-----IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 251 LLAGPLGPSTVPRLSSL-KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH-- 307
++G + P + S L ++I+ N+ + A L L + N LE
Sbjct: 160 RISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM---LEGDAS 214
Query: 308 -SFRALSTLSHLDLAHNRIVAVSGA--SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
F + + LA N + + + NL LDL +N + +T LK L
Sbjct: 215 VLFGSDKNTQKIHLAKNSL---AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 365 ELRLDDNDIS 374
L + N++
Sbjct: 272 SLNVSFNNLC 281
Score = 76.0 bits (188), Expect = 4e-15
Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 36/225 (16%)
Query: 139 IGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENT-----SFKGLS 192
I + L L + + +S +P L+ + L LD S+N L + S L
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDF-LSQI-KTLVTLDFSYNAL-----SGTLPPSISSLP 149
Query: 193 SLNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
+L + N++ + + L T + + NRLT + L ++ +DL
Sbjct: 150 NLVGITFDGNRISGAIPDSYGS--FSKLFT--SMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA---LAGLDKLTSLSCHHNQIDVL 304
S N+L G + + + +A N + + L L +N+I
Sbjct: 205 SRNMLEGDA-SVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGA--SLAHLSNLTTLDLSHN 347
L L L+++ N + G +L ++N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNL---CGEIPQGGNLQRFDVSAYANN 301
Score = 74.1 bits (183), Expect = 1e-14
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 28/217 (12%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL---MTLSQDCLAPLVTLRVLRLQG-NRL 228
D + + + +N LDLS L + LA L L L + G N L
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNL 89
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG----A 284
+ A+ L + L ++H ++G + P + ++ +L L ++N S G +
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALS----GTLPPS 144
Query: 285 LAGLDKLTSLSCHHNQIDVLEDH---SFRALSTLS-HLDLAHNRIVAVSG---ASLAHLS 337
++ L L ++ N+ + S+ + S L + ++ NR+ +G + A+L
Sbjct: 145 ISSLPNLVGITFDGNR---ISGAIPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANL- 197
Query: 338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
NL +DLS N L L K+ Q++ L N ++
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Score = 61.0 bits (149), Expect = 3e-10
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 138 FIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF 196
+ S ++ + N L+ +P + A L NL +DLS N L + F +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPT-FANL--NLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 197 LDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP 255
+ L+ N L L + + L L L+ NR+ ++ L L+ + L++S N L G
Sbjct: 226 IHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 256 LGPSTVPRLSSLKVLSIAHN 275
+ P L V + A+N
Sbjct: 284 I-PQG-GNLQRFDVSAYANN 301
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 82.8 bits (205), Expect = 9e-18
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
+ +L + + L+S++ + + + + ++ + L +R L L GN+L
Sbjct: 22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
++AL+ L ++T L L+ N L L +L++LK L + NQ S+ G L
Sbjct: 78 --ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
LT L+ HNQ+ L F L+ L+ LDL++N++ ++ L+ L L L N L+
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 351 ALTQDLITPLKSLQELRLDDN 371
++ + L SLQ + L DN
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDN 215
Score = 73.9 bits (182), Expect = 1e-14
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 10/204 (4%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
+ +VT E ++ ++ ++ ++K S L + ++ L L N L +
Sbjct: 24 ANLKKKSVTDAVT-QNELNSIDQIIANNSDIK--SVQGIQYLPN-VRYLALGGNKLHDIS 79
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
AL L NL L L+ NQL L N F L++L L L N+L +L L L
Sbjct: 80 --ALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
L L N+L L ++T+LDLS+N L + P G +L+ LK L + NQ
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLK 194
Query: 279 SVRRGALAGLDKLTSLSCHHNQID 302
SV G L L + H N D
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 58.9 bits (143), Expect = 1e-09
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
+L + T L+S+ + ++ SV + L + L+ N+
Sbjct: 20 ETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNK 74
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
+ + + + L+ L++L L N++ ++ L+NL L L N L++L + L
Sbjct: 75 LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 361 KSLQELRLDDNDI 373
+L L L N +
Sbjct: 133 TNLTYLNLAHNQL 145
Score = 37.7 bits (88), Expect = 0.009
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++L L + NQ S+ G L L L NQ+ L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Score = 29.2 bits (66), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L++L L +++NQ S+ G L +L L + NQ
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Score = 29.2 bits (66), Expect = 4.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
L++LK L + NQ S+ G L LT L+ HNQ+ L
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Score = 28.8 bits (65), Expect = 5.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L +++ L++ N+ + AL L LT L NQ+ L + F
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF 105
Score = 28.4 bits (64), Expect = 7.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ LK L + NQ SV G L L + H N D
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 84.0 bits (208), Expect = 2e-17
Identities = 50/296 (16%), Positives = 85/296 (28%), Gaps = 67/296 (22%)
Query: 145 LQALGLPNNLLSVVPTSALAPL---APNLDRLDLSHNQLYKLENTSFKGL---------- 191
++ + L N + L+ +L+ + S ++++ + L
Sbjct: 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPL----VTLRVLRLQGNRLTVSVVAAL----------- 236
L+ + LS N +Q+ L L L L N L A +
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153
Query: 237 --QGLRSVTDLDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHNQF-----SSVRRGAL 285
+ + + N L T L + + N + L
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212
Query: 286 AGLDKLTSLSCHHNQI---------DVLEDHSFRALSTLSHLDLAHNRI-----VAVSGA 331
A +L L N L+ L L L + AV A
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWP-----NLRELGLNDCLLSARGAAAVVDA 267
Query: 332 SLAHLSN--LTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDISMEPECI 380
+ L N L TL L +N + R L + + L L L+ N S E + +
Sbjct: 268 -FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 322
Score = 82.8 bits (205), Expect = 4e-17
Identities = 48/272 (17%), Positives = 86/272 (31%), Gaps = 58/272 (21%)
Query: 145 LQALGLPNNLLSVVPTSALA-PLA--PNLDRLDLSHNQL---------YKLENTSFKGLS 192
++ L + ++ ++ L ++ + LS N + + + K L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDLE 63
Query: 193 SLNFLDLSYNKLMTLSQDCLAPLV-------TLRVLRLQGNRLTV----SVVAALQGLRS 241
F D+ ++ + L L+ L +RL N ++ L
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
+ L L +N L GP IA L S+ C N++
Sbjct: 124 LEHLYLHNNGL-GPQA-----------GAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Query: 302 DVLEDHSFRALS-------TLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFL 349
E+ S + + L + + N I + LA+ L LDL N
Sbjct: 172 ---ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Query: 350 -----RALTQDLITPLKSLQELRLDDNDISME 376
AL + +L+EL L+D +S
Sbjct: 229 THLGSSALA-IALKSWPNLRELGLNDCLLSAR 259
Score = 38.5 bits (90), Expect = 0.007
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 314 TLSHLDLAHNRIVAVS----GASLAHLSNLTTLDLSHNFL-----RALTQDLITPLKSLQ 364
++ L + I A L ++ + LS N + R L++++ + K L+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLE 63
Query: 365 ELRLDDNDISMEPECIYVG 383
D + I
Sbjct: 64 IAEFSDIFTGRVKDEIPEA 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 76.7 bits (189), Expect = 6e-16
Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
L L NQ+ KLE F L +L L L N+L L L L VL L N+LTV
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
A L + +L + N L P + RL+ L L++ NQ S+ GA L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 291 LTSLSCHHNQID 302
LT N D
Sbjct: 161 LTHAYLFGNPWD 172
Score = 57.8 bits (140), Expect = 1e-09
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P+ +P ++ ++L + NQ + + G L L L NQ+ L F +L+ L+
Sbjct: 35 PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
LDL N++ + A L +L L + N L L I L L L LD N + P
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIP 151
Query: 378 E 378
Sbjct: 152 H 152
Score = 57.8 bits (140), Expect = 2e-09
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L + ++ + G F L + L+ L L +N L +P L L LDL NQL
Sbjct: 45 LYLHDNQITKLEPGVFDSLIN-LKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQLTV 102
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
L + F L L L + NKL L + L L L L N+L A L S+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 243 TDLDLSHN 250
T L N
Sbjct: 162 THAYLFGN 169
Score = 57.4 bits (139), Expect = 2e-09
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
+ L L N + L P L +LK L + NQ ++ G L +LT L NQ
Sbjct: 41 NAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
+ VL F L L L + N++ + + L++LT L L N L+++ L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 361 KSLQELRLDDN 371
SL L N
Sbjct: 159 SSLTHAYLFGN 169
Score = 56.6 bits (137), Expect = 4e-09
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAH 274
++L L N++T L ++ +L L N L P V L+ L VL +
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGT 97
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
NQ + + L L L N++ L L+ L+HL L N++ ++ +
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 335 HLSNLTTLDLSHN 347
LS+LT L N
Sbjct: 157 RLSSLTHAYLFGN 169
Score = 31.2 bits (71), Expect = 0.90
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 648 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
++L + NQ + + G L L L NQ+ L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Score = 28.5 bits (64), Expect = 6.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ L L++ NQ S+ GA L LT N D
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 75.1 bits (185), Expect = 1e-15
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
L + K L+++ N + +L+G++ L LS N I +E+ TL L +++
Sbjct: 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWISY 102
Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDN 371
N+I ++SG + L NL L +S+N + + D + L L++L L N
Sbjct: 103 NQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 72.0 bits (177), Expect = 1e-14
Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 20/187 (10%)
Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDL--SYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
+ + + + E + ++L + + L+ L + L L N
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNN 59
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+ +++L G+ ++ L L NL+ V +L+ L I++NQ +S+ +
Sbjct: 60 IE--KISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEELWISYNQIASLS--GIEK 113
Query: 288 LDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSGAS----------LAHL 336
L L L +N+I + AL L L LA N + + + L
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173
Query: 337 SNLTTLD 343
NL LD
Sbjct: 174 PNLKKLD 180
Score = 62.8 bits (153), Expect = 2e-11
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGN 226
L LS N + K+ + G+ +L L L N + + L + TL L + N
Sbjct: 48 KACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYN 103
Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV------ 280
++ + ++ ++ L ++ L +S+N + + L L+ L +A N +
Sbjct: 104 QI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161
Query: 281 ----RRGALAGLDKLTSL 294
R + L L L
Sbjct: 162 TSEYRIEVVKRLPNLKKL 179
Score = 60.9 bits (148), Expect = 7e-11
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
+ L I+ + D + L HL L+ N I +S L+ + NL L L N +
Sbjct: 26 EKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLI 82
Query: 350 RALTQDLITPLKSLQELRLDDNDIS 374
+ + +L +L+EL + N I+
Sbjct: 83 KKIE-NLDAVADTLEELWISYNQIA 106
Score = 60.9 bits (148), Expect = 1e-10
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L+ L L NL+ + L +A L+ L +S+NQ+ L + L +L L +S NK+
Sbjct: 72 LRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127
Query: 205 MTLSQ-DCLAPLVTLRVLRLQGNRLT 229
+ D LA L L L L GN L
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLY 153
Score = 60.5 bits (147), Expect = 1e-10
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 264 LSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
+ + + + H + + L+ L L+ N I+ + + L L L
Sbjct: 22 ATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG 78
Query: 322 HNRIVAVSGASLAHLSN-LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
N I + L +++ L L +S+N + +L I L +L+ L + +N I+
Sbjct: 79 RNLIKKIEN--LDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT 128
Score = 35.8 bits (83), Expect = 0.021
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+ +L+ L I++NQ +S+ + L L L +N+I +
Sbjct: 91 VADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGE 132
Score = 33.9 bits (78), Expect = 0.093
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 628 NNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
+ K+ AT L + K L+++ N + +L+G++ L LS N I +E+
Sbjct: 31 HGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN 87
Score = 32.0 bits (73), Expect = 0.44
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
+ +L++LS+ N + A D L L +NQI L
Sbjct: 69 MENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 73.9 bits (182), Expect = 2e-15
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
+ L+ L+ + L + + + A LD+ ++ N+I L
Sbjct: 2 VKLTAELIEQAAQ---YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL 57
Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSL 363
+ F L L L + +NRI + L +LT L L++N L L D + LKSL
Sbjct: 58 DG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 364 QELRLDDNDISMEPE 378
L + N ++ +
Sbjct: 116 TYLCILRNPVTNKKH 130
Score = 70.1 bits (172), Expect = 4e-14
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 14/153 (9%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGLRSVTDLDLSHNLLAG 254
+ L+ + +Q V R L L+G ++ V ++ A L + +D S N +
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDA---IDFSDNEIR- 55
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALS 313
L P L LK L + +N+ + G L LT L +N + L D +L
Sbjct: 56 KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 314 TLSHLDLAHNRIVAVSG---ASLAHLSNLTTLD 343
+L++L + N + + + + LD
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 63.9 bits (156), Expect = 4e-12
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ L L + V+ L D +D S N++ KL+ F L L L ++ N++
Sbjct: 21 DRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI 76
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHN 250
+ + L L L L N L + + L L+S+T L + N
Sbjct: 77 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Score = 58.9 bits (143), Expect = 3e-10
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
LDL ++ +EN L + +D S N++ L D L L+ L + NR+
Sbjct: 20 RDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV---RRGAL 285
Q L +T+L L++N L + L SL L I N ++ R +
Sbjct: 77 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 136
Query: 286 AGLDKLTSL 294
+ ++ L
Sbjct: 137 YKVPQVRVL 145
Score = 54.7 bits (132), Expect = 9e-09
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
A+ +N + + L L L +++N++ ++ + L L L L+ N L
Sbjct: 44 FDAIDFSDNEIRKLDG--FPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
Query: 205 MTLSQ-DCLAPLVTLRVLRLQGNRLT------VSVVAALQGLR 240
+ L D LA L +L L + N +T + V+ + +R
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L LK L + +N+ + G L LT L +N + L D
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105
Score = 30.8 bits (70), Expect = 1.0
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L + + N+ + L +L +L ++N+I + +
Sbjct: 40 TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQA 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 71.6 bits (176), Expect = 2e-14
Identities = 44/133 (33%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
LDL N L L N F L+SL L L NKL +L L +L L L N+L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 231 SVVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
L + +L L+ N L + P G +L+ LK L + NQ SV G L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 290 KLTSLSCHHNQID 302
L + H N D
Sbjct: 149 SLQYIWLHDNPWD 161
Score = 61.6 bits (150), Expect = 5e-11
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P+ +P + L + N S+ G L LT L N++ L + F L++L++
Sbjct: 23 PTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L+L+ N++ ++ L+ L L L+ N L++L + L L++LRL N
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Score = 60.8 bits (148), Expect = 9e-11
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
T LDL N L L L+SL L + N+ S+ G L LT L+ NQ
Sbjct: 29 QTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
+ L + F L+ L L L N++ ++ L+ L L L N L+++ + L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 361 KSLQELRLDDN 371
SLQ + L DN
Sbjct: 148 TSLQYIWLHDN 158
Score = 58.9 bits (143), Expect = 4e-10
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
L + + LK++ +G F L+S L L L N L +P L +L L+LS NQL
Sbjct: 33 LDLETNSLKSLPNGVFDELTS-LTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQS 90
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
L N F L+ L L L+ N+L +L L L+ LRL N+L L S+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 243 TDLDLSHN 250
+ L N
Sbjct: 151 QYIWLHDN 158
Score = 57.8 bits (140), Expect = 1e-09
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
L L+ N L L S+T L L N L L +L+SL L+++ N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
Q S+ G L +L L+ + NQ+ L D F L+ L L L N++ +V
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 336 LSNLTTLDLSHN 347
L++L + L N
Sbjct: 147 LTSLQYIWLHDN 158
Score = 37.3 bits (87), Expect = 0.008
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
LDL N + ++ L++LT L L N L++L + L SL L L N +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Score = 31.6 bits (72), Expect = 0.53
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 685
+ L + N S+ G L LT L N++ L
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L+ LK L++ NQ S+ G L +L L + NQ
Sbjct: 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Score = 29.3 bits (66), Expect = 3.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ LK L + NQ SV G L L + H N D
Sbjct: 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Score = 28.1 bits (63), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L+SL L+++ NQ S+ G L +L L+ + NQ
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Score = 28.1 bits (63), Expect = 9.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L+SL L + N+ S+ G L LT L+ NQ+ L + F
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 69.7 bits (171), Expect = 3e-14
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 263 RLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
S +K L + +++ + + G ++L LS + + + + L+ L L+L+
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMEPE 378
NR+ NLT L+LS N ++ L+ + + L++L+ L L + +++ +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 62.0 bits (151), Expect = 1e-11
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
S ++ L L N+ + L L+ L + L + N L+ L L+LS N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHN 250
++ + L L L GN++ +S + L+ L ++ LDL +
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 61.2 bits (149), Expect = 3e-11
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
+ V +L L ++ L+ LS + +S+ L L+KL L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLEL 71
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHN 347
N++ + L+HL+L+ N+I +S L L NL +LDL +
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 57.8 bits (140), Expect = 4e-10
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 217 TLRVLRLQGNRLTV-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
++ L L +R + + L + L + +P+L+ LK L ++ N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN 74
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSG---A 331
+ S LT L+ N+I L + L L LDL + + ++
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134
Query: 332 SLAHLSNLTTLD 343
L LT LD
Sbjct: 135 VFKLLPQLTYLD 146
Score = 53.9 bits (130), Expect = 8e-09
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 115 LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174
++ + L + G+L+ ++D L+ L N L+ + + L L L +L+
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDE----FEE-LEFLSTINVGLTSI--ANLPKL-NKLKKLE 70
Query: 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLT---- 229
LS N++ + +L L+LS NK+ LS + L L L+ L L +T
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Query: 230 --VSVVAALQGLR 240
+V L L
Sbjct: 131 YRENVFKLLPQLT 143
Score = 51.2 bits (123), Expect = 8e-08
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
LD S + KLE L FL L +++ L L L+ L L NR++ +
Sbjct: 24 LDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGL 80
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV---RRGALAGLD 289
+ ++T L+LS N + + +L +LK L + + + +++ R L
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140
Query: 290 KLTSL 294
+LT L
Sbjct: 141 QLTYL 145
Score = 35.0 bits (81), Expect = 0.026
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L+ LK L ++ N+ S LT L+ N+I L
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 75.2 bits (184), Expect = 3e-14
Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 17/207 (8%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC--LAPLVTLRVLRLQGNRL 228
S +L +LE + L ++ L + + L+ + + L + +R
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424
Query: 229 TVSVVAALQGL-----RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
S + V L L+H L +L + L ++HN+ ++
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE---QLLLVTHLDLSHNRLRALPPA 481
Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTL 342
LA L L L N ++ ++ L L L L +NR+ + L L L
Sbjct: 482 -LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
Query: 343 DLSHNFLR---ALTQDLITPLKSLQEL 366
+L N L + + L L S+ +
Sbjct: 539 NLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 71.3 bits (174), Expect = 5e-13
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
++ L L+H L L + + L + LDLS+N+L L LA L L VL+ N
Sbjct: 441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 497
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
L V + L + +L L +N L + L +L++ N
Sbjct: 498 LEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
Score = 69.0 bits (168), Expect = 2e-12
Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 34/215 (15%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
L R +LS + L++ S +L L + L+T+ +L ++
Sbjct: 350 QLFRCELSVEKSTVLQS-----------ELESCKELQELEPENKWCLLTI-ILLMRALDP 397
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
+ LQ ++ +D L ++F
Sbjct: 398 LLYEKETLQYFSTLKAVDPMR-----------------AAYLDDLRSKFLLENSVLKMEY 440
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
+ L H + VL L ++HLDL+HNR+ A+ +LA L L L S N
Sbjct: 441 ADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 497
Query: 349 LRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
L + D + L LQEL L +N + +
Sbjct: 498 LENV--DGVANLPRLQELLLCNNRLQQSAAIQPLV 530
Score = 38.6 bits (89), Expect = 0.008
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L L+VL + N +V +A L +L L +N++
Sbjct: 485 LRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAA 525
Score = 31.7 bits (71), Expect = 0.85
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 644 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDH 687
L L+ L + +N+ L +L L+ N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 72.8 bits (179), Expect = 6e-14
Identities = 55/287 (19%), Positives = 102/287 (35%), Gaps = 50/287 (17%)
Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQLYK-----LENTS 187
F + + +L L N L + T L ++ L+LS N L L
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 188 FKGLSSLNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL-QGLR- 240
+++ L+LS N L L + A T+ VL L N + + Q
Sbjct: 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 241 ---SVTDLDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK--- 290
S+T L+L N L + L +++ L++ N +S LA
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
Query: 291 --LTSLSCHHNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HL 336
+TSL N + S+ L+ + L+L N + S +L L
Sbjct: 196 ASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
Query: 337 SNLTTLDLSHNFLRALTQDLITPL-------KSLQELRLDDNDISME 376
+L T+ L ++ ++ ++++ L + + + + +I
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299
Score = 40.1 bits (94), Expect = 0.002
Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 33/188 (17%)
Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQLY----KLENTSF 188
+ + + +L L NLL + + LA + ++ L+L N L+ +
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249
Query: 189 KGLSSLNFLDLSYNKLMTLSQDCLAPLV-------TLRVLRLQGNRLTVSVVAALQGLRS 241
L L + L Y+ + +S++ L + ++ G + S +
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS---- 305
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
NL+ G + VP L + ++ +Q + L D+L
Sbjct: 306 --------NLIRELSGKADVPSLLNQCLIFAQKHQTNI---EDLNIPDELRESIQTCKP- 353
Query: 302 DVLEDHSF 309
L +H
Sbjct: 354 --LLEHHH 359
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 69.0 bits (169), Expect = 8e-14
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 263 RLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
++++ L + + + + + G A L LS + + + + L L L+L+
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMEPE 378
NRI L NLT L+LS N L+ ++ + + L+ L+ L L + +++ +
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 58.6 bits (142), Expect = 3e-10
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 217 TLRVLRLQGNRLTVSVVAALQG-LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
+R L L + + L ++ L L + L +P+L LK L ++ N
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSEN 81
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSG---A 331
+ L LT L+ N++ + + L L LDL + + ++ +
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141
Query: 332 SLAHLSNLTTLD 343
L LT LD
Sbjct: 142 VFKLLPQLTYLD 153
Score = 56.3 bits (136), Expect = 2e-09
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L+ L L N L V S L L P L +L+LS N+++ + + L +L L+LS NKL
Sbjct: 51 LEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107
Query: 205 MTLSQ-DCLAPLVTLRVLRLQGNRLT------VSVVAALQGLR 240
+S + L L L+ L L +T SV L L
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150
Score = 34.7 bits (80), Expect = 0.037
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L LK L ++ N+ L LT L+ N++ +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112
Score = 31.6 bits (72), Expect = 0.46
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 628 NNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 687
+N S K++ T +L+ LS+ + SV L L KL L N+I D
Sbjct: 32 DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM 89
Query: 688 SFSN 691
Sbjct: 90 LAEK 93
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 72.5 bits (177), Expect = 8e-14
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 284 ALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
L G + LT L + Q + LE R L L +L + + + V+ + L+ L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDN 371
+LS N L +L+ + L SLQEL L N
Sbjct: 86 NLSFNALESLSWKTVQGL-SLQELVLSGN 113
Score = 72.5 bits (177), Expect = 9e-14
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
+P +L L I + Q + L GL +L +L+ + + + +F LS
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L+L+ N + ++S ++ LS L L LS N L
Sbjct: 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 70.2 bits (171), Expect = 4e-13
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
+ + L G ++T+L + + L + L L+ L+I + V A
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
+L+ L+ N ++ L + + LS L L L+ N +
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 69.0 bits (168), Expect = 1e-12
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 137 AFIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
G + L L + L + L L L L + + L + +F L+
Sbjct: 26 HLPGAEN-LTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
L+LS+N L +LS + L +L+ L L GN L
Sbjct: 84 RLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
Score = 61.7 bits (149), Expect = 2e-10
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 165 PLAPNLDRLDLSHNQ-LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
P A NL L + + Q L LE +GL L L + + L ++ D L L L
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87
Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHN 250
N L +QGL S+ +L LS N
Sbjct: 88 SFNALESLSWKTVQGL-SLQELVLSGN 113
Score = 54.4 bits (130), Expect = 5e-08
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 186 TSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTD 244
G +L L + + L L L L LR L + + L A ++
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L+LS N L L TV L SL+ L ++ N
Sbjct: 85 LNLSFNALES-LSWKTVQGL-SLQELVLSGNPL 115
Score = 45.5 bits (107), Expect = 4e-05
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L L+ L+I + V A +L+ L+ N ++ L +
Sbjct: 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102
Score = 41.6 bits (97), Expect = 6e-04
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 644 LSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+L L I + Q + L GL +L +L+ + + + +F
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 2e-13
Identities = 92/589 (15%), Positives = 163/589 (27%), Gaps = 228/589 (38%)
Query: 25 LTIYSYVTATSSPSTPTS--------------TLPSSPSTPTPWSCPSIKNDLCACDLPH 70
LT+ S+ + PT+ LP P+ +L L +
Sbjct: 9 LTL-SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 71 TLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGEL 130
+S + + + +L+ L+ +LEG +H L L
Sbjct: 68 -------------VSSLVEPSKVGQFDQVLNLCLTEFEN---CYLEGNDIHALAAK---L 108
Query: 131 KNISDGAFIGLSSPLQ----ALGLPNNLLSVVPTSAL--------APL------------ 166
+D + ++ A + SAL A L
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 167 ------------APNLDRL-DLSHNQLYKLENTSF-------KGLSSLNFLDLSYNKLMT 206
+ L S L +L T+ +GL+ L +L+ N T
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE---NPSNT 225
Query: 207 LSQDCLA------PL----------VTLRVL---------RLQGNRLTV---SVVAALQG 238
+D L PL VT ++L L+G T +V A+
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG--ATGHSQGLVTAV-- 281
Query: 239 LRSVTD-----LDLSHNLLA-----GPLGPSTVPRLS-SLKVL--SIAHNQFS-----SV 280
+ TD + G P S +L S+ +N+ S+
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA-HN--RIVAVSG--ASLAH 335
L + + + ++ H L ++++ N + + VSG SL
Sbjct: 342 S-----NLTQ-EQVQDY---VNKTNSH----LPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 336 LSNL-------TTLD------------LSHNFLRALTQDLIT-P-----LKSLQELRLDD 370
L+ + LD S+ FL + P L +L D
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP------VASPFHSHLLVPASDLINKD 442
Query: 371 NDISMEPECIYVGFNTMDLELIYSGV-WRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEG 429
L+ + V + + IPV Y +G
Sbjct: 443 --------------------LVKNNVSFNAKDIQIPV---------------YDTF--DG 465
Query: 430 SNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVT-----GLGTV 473
S++ S + +V + P+ + T+ + T G G
Sbjct: 466 SDLRVLSGSISE-----RIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Score = 62.0 bits (150), Expect = 6e-10
Identities = 106/599 (17%), Positives = 158/599 (26%), Gaps = 226/599 (37%)
Query: 216 VTLRVLRL-QGN-RLTVSV-----VAALQGLRS--VTDLDLSHNLLAGPLGPSTVPRL-- 264
+ R L L G+ + V A Q L+ L A P+T L
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 265 ----------------SSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLED 306
+VL++ +F L G D L + N +++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 307 HS-----FRALSTLSH-LDLAHN------------RIVAV---SGASLAHLSNLTTL-DL 344
A D N ++VA+ G + + L L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDN-------DI-------SMEPECIYVGFNTMDLE 390
H + L + L L LD +I S P+ Y
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--------- 230
Query: 391 LIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVL-IEG---SNILDQSALVLGCSE-- 444
L+ + S LI ++ L Y V + G + G S+
Sbjct: 231 LLSIPI---SCPLI-GVIQLA---------HYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 445 ILALV--------------------------------PTLTSQPLSYVTSLRAN------ 466
+ A+ P + P SL N
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 467 ---VTGL--GTVQVYVQLWTN-YDP-NCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPW 519
++ L VQ YV TN + P + I+L ++G KN S P SL L
Sbjct: 338 MLSISNLTQEQVQDYVNK-TNSHLPAGKQVEISL-VNGA----KNLVVSGPPQSLYGLNL 391
Query: 520 SPKYQVCATLG------EFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLIN 573
+ + + A G F K +N F LP+ ++P HS
Sbjct: 392 TLR-KAKAPSGLDQSRIPFSERKL-----KFSNRF-----LPV---ASPFHSHL------ 431
Query: 574 LSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQED--DINRNNSD 631
L L L N + + IPV D D+ R S
Sbjct: 432 LVPASDLINKDL-----------------VKNNVSFNAKDIQIPVYDTFDGSDL-RVLSG 473
Query: 632 S-----------------RYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTS 673
S + +AT IL F G +GL LT
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILD------------FG---PGGASGLGVLTH 517
Score = 57.8 bits (139), Expect = 1e-08
Identities = 97/562 (17%), Positives = 161/562 (28%), Gaps = 195/562 (34%)
Query: 115 LEGVTLHGLVISSGELK---NISDGAFIGLSSPLQ---ALGLPNNLLSVVPTSALAPLAP 168
++ + L +S G L+ + +F S LQ LP PT A
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQ-LQEQFNKILPE------PTEGFAADDE 53
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
+L F L ++ + + +VL L
Sbjct: 54 PTTPAELV---------GKF-----LGYVS------SLVEPSKVGQ--FDQVLNLCLTEF 91
Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL-------SIAHNQFSSVR 281
L+G D+ H L A L + + + +++ +A F
Sbjct: 92 ENCY---LEG----NDI---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 282 RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV---SGASLAHLSN 338
AL FRA+ + ++VA+ G + +
Sbjct: 142 NSAL-----------------------FRAVGE------GNAQLVAIFGGQGNTDDYFEE 172
Query: 339 LTTL-DLSHNFLRALTQDLITPLKSLQELRLDDN-------DI-------SMEPECIYVG 383
L L H + L + L L LD +I S P+ Y
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-- 230
Query: 384 FNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVL-IEG---SNILDQSALV 439
L+ + S LI ++ L Y V + G +
Sbjct: 231 -------LLSIPI---SCPLI-GVIQLA---------HYVVTAKLLGFTPGELRSYLKGA 270
Query: 440 LGCSE--ILALVPTLTSQPLSYVTSLRANVT-----GLGTVQVYVQLWTNYDPNCLLTIT 492
G S+ + A+ T S+ S+R +T G+ + Y PN L +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY--------PNTSLPPS 322
Query: 493 LYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEF----PTDKPLLHCITITNPF 548
+ D ++ N P +S+ L + QV + + P K + I++ N
Sbjct: 323 ILED---SLENNEGVPSPMLSISNL---TQEQVQDYVNKTNSHLPAGKQV--EISLVN-- 372
Query: 549 PSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKI-------- 600
L ++GP P SL L+ L RK
Sbjct: 373 -GAKNLVVSGP--P------QSLYGLNLTL-------------------RKAKAPSGLDQ 404
Query: 601 CRTP---RNSTIHHHACFIPVA 619
R P R + F+PVA
Sbjct: 405 SRIPFSERKLKFSN--RFLPVA 424
Score = 54.3 bits (130), Expect = 1e-07
Identities = 56/327 (17%), Positives = 89/327 (27%), Gaps = 136/327 (41%)
Query: 45 PSS-PSTP----TPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSL 99
PS+ P P SCP I L H Y ++ L G P E L
Sbjct: 222 PSNTPDKDYLLSIPISCPLI----GVIQLAH-----------YVVTAKLLGFTPGE---L 263
Query: 100 LDCTLSNVTVLPGKFLEGVTLHG------LVISSG----ELKNISDGA-----FIG---- 140
L+G T H + I+ A FIG
Sbjct: 264 RSY------------LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 141 -----LSSPLQAL--------GLPNNLLSV--VPTSALAPL-------APNLDRLDLS-H 177
S P L G+P+ +LS+ + + P ++++S
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 178 N------------QLYKLENTSFKGLS-------------------SLNFLDLS--YN-K 203
N LY L N + + S FL ++ ++
Sbjct: 372 NGAKNLVVSGPPQSLYGL-NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 204 LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG--LRSV------------------- 242
L+ + D + + + + + V G LR +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 243 ---TDLDLSHNLLAGPLGPSTVPRLSS 266
T +H L GP G S + L+
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTH 517
Score = 44.7 bits (105), Expect = 1e-04
Identities = 57/291 (19%), Positives = 97/291 (33%), Gaps = 81/291 (27%)
Query: 80 DLYAISESLRGL--EPDERV------SLLDCTLSN---VTVLPGKFLEGVTLHGLVISSG 128
DLY S++ + + D S+LD ++N +T+ G G + +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG----GEKGKRIRENYS 1689
Query: 129 EL--KNISDGA------FIGLSSPLQALGL--PNNLLSVVPTS----AL-----APLAPN 169
+ + I DG F ++ + LLS T AL A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFTQPALTLMEKAAFE-- 1745
Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDL-------SYNKLMTLSQDCLAPLVTLR--- 219
DL L + +F G S L S +M++ L +V R
Sbjct: 1746 ----DLKSKGLIP-ADATFAGHS------LGEYAALASLADVMSIES--LVEVVFYRGMT 1792
Query: 220 ----VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA-H 274
V R + R ++A G + + + + +G T ++ I +
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG------WLVEIVNY 1846
Query: 275 N----QFSSVRRGALAGLDKLTSL--SCHHNQIDVLE-DHSFRALSTLSHL 318
N Q+ V G L LD +T++ +ID++E S HL
Sbjct: 1847 NVENQQY--VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 38.9 bits (90), Expect = 0.007
Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 56/165 (33%)
Query: 551 PPALPLAGPSTPTHS---SHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNS 607
P AG HS Y +L +L++V+S+ ++ +V R
Sbjct: 1754 PADATFAG-----HSLGE--YAALASLADVMSIESLVE----------VVFY-----RGM 1791
Query: 608 TIHHHACFIPVAQQEDDINRNN------SDSRYVK------LQAT--TILLSSLKVLSIA 653
T+ A D++ R+N + R LQ + + ++ I
Sbjct: 1792 TMQV-------AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 654 -HN----QFSSVRRGALAGLDKLTSL--SCHHNQIDVLE-DHSFS 690
+N Q+ V G L LD +T++ +ID++E S S
Sbjct: 1845 NYNVENQQY--VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 64.2 bits (157), Expect = 5e-12
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P +P + L + NQF+ V L+ LT + +N+I L + SF ++ L
Sbjct: 26 PKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L++NR+ + + L +L L L N + + + L +L L + N
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 59.6 bits (145), Expect = 2e-10
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
L L N ++VP L+ +L +DLS+N++ L N SF ++ L L LSYN+L
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
+ L +LR+L L GN ++V A L +++ L + N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 58.8 bits (143), Expect = 3e-10
Identities = 34/132 (25%), Positives = 46/132 (34%), Gaps = 26/132 (19%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
L L NQ L L +DLS N++ TLS + + L L L NRL
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
+ D L SL++LS+ N S V GA L
Sbjct: 92 ----CIP--PRTFD------------------GLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 291 LTSLSCHHNQID 302
L+ L+ N +
Sbjct: 128 LSHLAIGANPLY 139
Score = 58.5 bits (142), Expect = 5e-10
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
T L NQ L L+ +DL++NRI +S S ++++ L TL LS+N LR
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 352 LTQDLITPLKSLQELRLDDNDISMEPE 378
+ LKSL+ L L NDIS+ PE
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPE 119
Score = 45.8 bits (109), Expect = 1e-05
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
T++P + L + +S+ + +S+ +F ++ L L L N L +P L
Sbjct: 44 TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-LLTLILSYNRLRCIPPRTFDGLK 102
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
+L L L N + + +F LS+L+ L + N
Sbjct: 103 -SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 36.5 bits (85), Expect = 0.014
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
++ L L +++N+ + GL L LS H N I V+ + +F++
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124
Score = 33.4 bits (77), Expect = 0.15
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 648 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L + NQF+ V L+ LT + +N+I L + SFSN
Sbjct: 34 TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSN 76
Score = 31.5 bits (72), Expect = 0.60
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L ++ +++N+ S++ + + + +L +L +N++ + +F
Sbjct: 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Score = 31.5 bits (72), Expect = 0.66
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L SL++LS+ N S V GA L L+ L+ N +
Sbjct: 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 62.3 bits (152), Expect = 2e-11
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
L L +N L + + L P+L +L+L NQL +E +F+G S + L L NK+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
+S L L+ L L N+++ + + + L S+T L+L+ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 60.8 bits (148), Expect = 8e-11
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
P +P L + N+ + G L L L NQ+ +E ++F S +
Sbjct: 24 PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81
Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L N+I +S L L TL+L N + + L SL L L N
Sbjct: 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 59.2 bits (144), Expect = 3e-10
Identities = 32/107 (29%), Positives = 48/107 (44%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
T+L L+ N L RL L L + NQ + + A G + L N+
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
I + + F L L L+L N+I V S HL++LT+L+L+ N
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 56.5 bits (137), Expect = 2e-09
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 26/133 (19%)
Query: 171 DRLDLSHNQLYKLENT-SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
L L+ N+L ++ + F L L L+L N+L + + ++ L+L N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
+ L LK L++ NQ S V G+ L+
Sbjct: 92 E-------------------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126
Query: 290 KLTSLSCHHNQID 302
LTSL+ N +
Sbjct: 127 SLTSLNLASNPFN 139
Score = 52.7 bits (127), Expect = 4e-08
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 292 TSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
T L + N++ + F L L L+L N++ + + S++ L L N ++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPE 378
++ + L L+ L L DN IS
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMP 119
Score = 36.1 bits (84), Expect = 0.018
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
S ++ L + N+ + GL +L +L+ + NQI + SF +
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
Score = 33.8 bits (78), Expect = 0.094
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
L L L + NQ + + A G + L N+I + + F
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98
Score = 32.3 bits (74), Expect = 0.31
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
P F + L + ++K IS+ F+GL L+ L L +N +S V + L +L
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQ-LKTLNLYDNQISCVMPGSFEHL-NSL 128
Query: 171 DRLDLSHN 178
L+L+ N
Sbjct: 129 TSLNLASN 136
Score = 30.7 bits (70), Expect = 0.92
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L LK L++ NQ S V G+ L+ LTSL+ N +
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 64.4 bits (157), Expect = 4e-11
Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 33/242 (13%)
Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV--TLRV 220
L NLD L+ + KL + L LD + + V +LR
Sbjct: 18 LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFF-HYEFQNQRFSAEVLSSLRQ 76
Query: 221 LRLQGNRLTVSVVAAL-QGLRS----VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
L L G R+T + L S + +++L+ L + +P + L + N
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Query: 276 QFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFRALS-------TLSHLDLAHN 323
L L ++T+L +N + L +++HL L H
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHT 193
Query: 324 RI----VAVSGASLAHLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 374
+ + + A L L L++++N AL + SL+ L L N++S
Sbjct: 194 GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH-PSLELLHLYFNELS 252
Query: 375 ME 376
E
Sbjct: 253 SE 254
Score = 63.6 bits (155), Expect = 8e-11
Identities = 45/256 (17%), Positives = 76/256 (29%), Gaps = 58/256 (22%)
Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS-------- 193
L + L + L L P+ +L L N L + K L
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS---LGPEACKDLRDLLLHDQCQ 156
Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTD 244
+ L LS N L L + LA ++ L L L + A L R + +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215
Query: 245 LDLSHNLLAGPLGPSTVPRLS-------SLKVLSIAHNQFSSVRRGALA-------GLDK 290
L++++N G + L+ SL++L + N+ SS R L G +
Sbjct: 216 LNVAYN----GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271
Query: 291 LTSLSCHHNQID---------------VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
+ + + + L DL +R ++ A
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ 331
Query: 336 L----SNLTTLDLSHN 347
L + L
Sbjct: 332 LLRVEGEVRALLEQLG 347
Score = 47.4 bits (113), Expect = 9e-06
Identities = 39/252 (15%), Positives = 64/252 (25%), Gaps = 54/252 (21%)
Query: 132 NISDGAFIGLSSPLQA---LGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQLYKLE 184
+ L LGL N L L L + L LS+N L
Sbjct: 112 QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL---T 168
Query: 185 NTSFKGLS-------SLNFLDLSYNKL----MTLSQDCLAPLVTLRVLRLQGNRLT---- 229
L S+ L L + L + L L L+ L + N
Sbjct: 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228
Query: 230 VSVVAALQGLRSVTDLDLSHN--------LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR 281
+++ A + S+ L L N +L G + + + V S
Sbjct: 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG--GARVVVSLTEGTAVSEYW 286
Query: 282 RGALAGLDK---------------LTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAH 322
L+ + + L ++ L R + L
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346
Query: 323 NRIVAVSGASLA 334
+ SG+
Sbjct: 347 GSSGSPSGSWSH 358
Score = 38.2 bits (89), Expect = 0.008
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 27/126 (21%)
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF- 309
+LA P + L +L+ + + R L + L L H+ ++ F
Sbjct: 14 VLAQLGCP--IKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE----FQNQRFS 67
Query: 310 -RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
LS+L L+LA R+ V +A + L + +L E+ L
Sbjct: 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAV-------------------LGSGRHALDEVNL 108
Query: 369 DDNDIS 374
+
Sbjct: 109 ASCQLD 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 57.7 bits (140), Expect = 7e-10
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 27/133 (20%)
Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
RL+L N+L L + F L+ L L LS N++ +L L L +L L N+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK--- 87
Query: 231 SVVAALQGL-RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
LQ L V D +L+ LK L++ NQ SV G L
Sbjct: 88 -----LQSLPNGVFD------------------KLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 290 KLTSLSCHHNQID 302
L + H N D
Sbjct: 125 SLQKIWLHTNPWD 137
Score = 56.1 bits (136), Expect = 2e-09
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
P+ +P SS L + N+ S+ G L +LT LS NQI L D F L+ L+
Sbjct: 23 PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L N++ ++ L+ L L L N L+++ + L SLQ++ L N
Sbjct: 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 51.5 bits (124), Expect = 1e-07
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
+ L L+ N+L L +T L LS N + L +L+ L +L + N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHEN 86
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
+ S+ G L +L L+ NQ+ + D F L++L + L N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 48.8 bits (117), Expect = 8e-07
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
L L +N L +P L L +L LS NQ+ L + F L+ L L L NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
+L L L+ L L N+L L S+ + L N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 47.3 bits (113), Expect = 3e-06
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S T L+L N L L +L+ L LS++ NQ S+ G L KLT L H N+
Sbjct: 29 SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
+ L + F L+ L L L N++ +V L++L + L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 31.1 bits (71), Expect = 0.68
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L+ L +L + N+ S+ G L +L L+ NQ+ + D F
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122
Score = 29.5 bits (67), Expect = 2.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ LK L++ NQ SV G L L + H N D
Sbjct: 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 54.9 bits (132), Expect = 7e-08
Identities = 52/315 (16%), Positives = 102/315 (32%), Gaps = 30/315 (9%)
Query: 96 RVSLLDCTLSNVTVLPGKF--LEGVTLHG---------LVISSGELKNISDGAFIGLSSP 144
+V + +C + + +F + V L G + G A +
Sbjct: 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF----KGLSSLNFLDLS 200
L+ + L +++ +A N L LS +L LDL
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC--EGFSTDGLAAIAATCRNLKELDLR 164
Query: 201 YNKLMTLSQDCLAPLV----TLRVLRLQGNRLTVS---VVAALQGLRSVTDLDLSH--NL 251
+ + +S L+ +L L + VS + + ++ L L+ L
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224
Query: 252 LAGPLGPSTVPRLSSLKV---LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS 308
P+L L + S AL+G +L LS + +
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284
Query: 309 FRALSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367
+ S L+ L+L++ + + L L L + A + L + K L+ELR
Sbjct: 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344
Query: 368 LDDNDISMEPECIYV 382
+ ++ + + +
Sbjct: 345 VFPSEPFVMEPNVAL 359
Score = 34.1 bits (78), Expect = 0.19
Identities = 42/321 (13%), Positives = 90/321 (28%), Gaps = 59/321 (18%)
Query: 79 SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAF 138
S L + L+ + L + + G + E++
Sbjct: 201 SALERLVTRCPNLK---SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257
Query: 139 IGLSSPLQALGLPNNLLSVVPTS--ALAPLAPNLDRLDLSHNQL---------------- 180
S + L + VP A+ + L L+LS+ +
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317
Query: 181 -----YKLENTSFKGLSS----LNFLDLSYNKLMT------LSQDCLAPLVT----LRVL 221
+E+ + L+S L L + ++ L++ L + L +
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377
Query: 222 RLQGNRLTVSVVAAL-QGLRSVTDLDLSHNLLAGPLGPSTVP----------RLSSLKVL 270
++T + + + + ++T L P + P L+ L
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST----LSHLDLAHNRIV 326
S++ V K+ LS D + + L L++
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS---DLGMHHVLSGCDSLRKLEIRDCPFG 494
Query: 327 AVSGASLA-HLSNLTTLDLSH 346
+ + A L + +L +S
Sbjct: 495 DKALLANASKLETMRSLWMSS 515
Score = 28.3 bits (63), Expect = 9.7
Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 27/200 (13%)
Query: 55 SCPSIKN-DLCACDLPHTLRCTA-NKSDLYAISESLRGLEPDERVSLLDCT-LSNVTVL- 110
+C ++ + + A + L ++S L L C ++N ++
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL----ESVLYFCRQMTNAALIT 391
Query: 111 ---PGKFLEGVTLHGL--VISSGELKNISDGAFIGLSS---PLQALGLPNNLLSVVPTSA 162
+ L + D F + L+ L L + LL+
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEY 450
Query: 163 LAPLAPNLDRLDLSHNQ-----LYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLV 216
+ A ++ L ++ ++ + G SL L++ + + L
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHV----LSGCDSLRKLEIRDCPFGDKALLANASKLE 506
Query: 217 TLRVLRLQGNRLTVSVVAAL 236
T+R L + ++ L
Sbjct: 507 TMRSLWMSSCSVSFGACKLL 526
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 54.2 bits (129), Expect = 7e-08
Identities = 25/197 (12%), Positives = 68/197 (34%), Gaps = 25/197 (12%)
Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG--LRSVTDL 245
+ LN L + +++ + L+ L + L SVV + G L ++ L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRP---NLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
L + + L + ++F +++ + + V
Sbjct: 225 VLYVGV-EDYGFDGDMNVFRPL----FSKDRFPNLKWLGIV--------DAEEQNVVVEM 271
Query: 306 DHSFRALSTLSHLDLAHNRI----VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361
L L +D++ + + + + +L +++ +N+ L+ ++ L+
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY---LSDEMKKELQ 328
Query: 362 SLQELRLDDNDISMEPE 378
+++D +D +
Sbjct: 329 KSLPMKIDVSDSQEYDD 345
Score = 50.0 bits (118), Expect = 1e-06
Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 27/163 (16%)
Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS--VRRGALAGL 288
V+ A+ L + + ++NL G +LK L I V + L
Sbjct: 166 PVLDAMPLLNN-LKIKGTNNLSIGKK------PRPNLKSLEIISGGLPDSVVEDILGSDL 218
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALS---------TLSHLDLAHNRIVAVSGASLAH---L 336
L L + D D L L + V L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 337 SNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 374
L T+D+S L R L + +K L+ + + N +S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLS 320
Score = 47.6 bits (112), Expect = 8e-06
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 27/202 (13%)
Query: 130 LKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAP-LAPNLDRLDLSHNQLYKLENTS 187
+K ++ + P L++L + + L + PNL++L L +
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238
Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL---QGLRSVTD 244
L S+D L+ L + VV L +
Sbjct: 239 MNVFRPL------------FSKDRFP---NLKWLGIVDAEEQNVVVEMFLESDILPQLET 283
Query: 245 LDLSHNLL---AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQ 300
+D+S +L L V ++ LK +++ +N S + L L +S +
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS---DS 340
Query: 301 IDVLEDHSFRALSTLSHLDLAH 322
+ +D+S+ ++ L H H
Sbjct: 341 QEYDDDYSYPMITELEHHHHHH 362
Score = 29.9 bits (66), Expect = 3.2
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 624 DINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALA----GLDKLTSLSCHHN 679
I + V++ + +L L+ + I+ + L + L ++ +N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Query: 680 QI 681
+
Sbjct: 318 YL 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-07
Identities = 65/533 (12%), Positives = 135/533 (25%), Gaps = 190/533 (35%)
Query: 20 CLVLLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCPSIKNDLCACDLPHTL------- 72
L +L + + T S S+ ++ L + + L
Sbjct: 198 VLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 73 ----------RC-----TANKSDLYAIS----------ESLRGLEPDERVSLLDCTLSNV 107
C T K +S L PDE SLL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------- 307
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQAL-GLPNNLLSVVPTSALAPL 166
K+L+ +L P + L P LS++ +
Sbjct: 308 ----LKYLD--------CRPQDL-------------PREVLTTNPR-RLSIIA----ESI 337
Query: 167 APNLDRLD-LSHNQLYKLENTSFKGLSSLNFLDLS--YNKLMTLSQDCLAPLVTLRVLRL 223
L D H KL L+ L + +++L P + L ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
+ V VV N+ +
Sbjct: 398 DVIKSDVMVVV----------------------------------------NKL--HKYS 415
Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
+ K +++S +++ L + H IV
Sbjct: 416 LVEKQPKESTISIPSIYLELKV--------KLENEYALHRSIVD---------------- 451
Query: 344 LSHNFLRALTQDLITPLKS-----------LQELRLDDNDISMEPECIYVGFNTMDLELI 392
+N + D + P L+ + + +++ F ++ ++
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLEQKIR 508
Query: 393 YSGV-WRHSTLLIPVMLSLCTRSSVVTRYR-YCVVLIEGSNILDQSALVLGCSEILALVP 450
+ W S ++ + L Y+ Y + + ++ LV + IL +P
Sbjct: 509 HDSTAWNASGSILNTLQQL-------KFYKPY---ICDNDPKYER--LV---NAILDFLP 553
Query: 451 TLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503
+ + + T L +++ + ++ + VQ+
Sbjct: 554 KIEEN------LICSKYTDL------LRIALMAEDE-----AIFEEAHKQVQR 589
Score = 53.3 bits (127), Expect = 3e-07
Identities = 92/631 (14%), Positives = 177/631 (28%), Gaps = 204/631 (32%)
Query: 68 LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
L + D + + + + E + ++ + + L ++S
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-------HIIMSKDAVSGTLRLFWTLLSK 74
Query: 128 GELKNISDGAFIGLSSPLQALGLPNN--LLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
E + F+ L+ N L+S + T P + ++LY +N
Sbjct: 75 QE--EMVQ-KFVE--EVLR----INYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYN-DN 123
Query: 186 TSFKGLSSLN------FLDLSYNKLMTLSQD--------------CLAPLV--TLRVLRL 223
F + N +L L L+ L +A V + +V
Sbjct: 124 QVF---AKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 224 QGNR---LTV-------SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSI 272
+ L + +V+ LQ L + N + S + R+ S++
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQ---- 231
Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV------ 326
A L +L + N + VL + + + +L +I+
Sbjct: 232 -------------AELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNL-SCKILLTTRFK 275
Query: 327 ----AVSGASLAHLS------NLT---TLDLSHNFLRALTQDL------ITPLKSLQELR 367
+S A+ H+S LT L +L QDL P +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------ 329
Query: 368 LDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL--LIPVM-LSLCTRSSVVTR--YRY 422
+S+ E I G T D W+H L ++ SL R +
Sbjct: 330 -----LSIIAESIRDGLATWD----N---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 423 CVVLIEGSNILDQSALVLG----------CSEILALVPT---LTSQPLSYVTSL------ 463
V ++I ++L ++ + + QP S+
Sbjct: 378 LSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 464 -RANVTGLGT-----VQVYVQLWTNYDPNCLLTI-------------------------- 491
+ + V Y + +D + L+
Sbjct: 435 LKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 492 -TLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPS 550
+++D + QK + W+ + TL + KP + I + P
Sbjct: 494 RMVFLDFRFLEQK--------IRHDSTAWNASGSILNTLQQLKFYKP--Y---ICDNDPK 540
Query: 551 PPALP------LAGPSTPTHSSHYTSLINLS 575
L L S YT L+ ++
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 44.5 bits (104), Expect = 1e-04
Identities = 60/331 (18%), Positives = 100/331 (30%), Gaps = 90/331 (27%)
Query: 2 SLIAYLMRDILRD--------GMSQYCLVLLLTIYSYVTATSSPSTPTS-TLPSSPSTPT 52
L+ +L + + C +LL T + VT S +T T +L T T
Sbjct: 246 CLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 53 PW-------SCPSIKNDLCACDLPH---------------TLRCTANKSDLY-------- 82
P + DLP ++R D +
Sbjct: 300 PDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 83 --AISESLRGLEPDE-RVSLLDCTL--SNVTVLPGKFLE-----------GVTLHGLVIS 126
I SL LEP E R ++ + + P L V ++ L
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 127 SGELKNISDGAF----IGLSSPLQALGLPN---------NLLSVVPTSALAPLAPNLDRL 173
S K + I L ++ N+ + L P P LD+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQY 472
Query: 174 DLSH--NQLYKLENTSFKGLSSLNFLDLSY--NKLMTLSQDCLAP---LVTLRVLRLQGN 226
SH + L +E+ L + FLD + K+ S A L TL+ L+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 227 RLTVSVVAALQGLRSVTD--LDLSHNLLAGP 255
+ + + + ++ D + NL+
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSK 563
Score = 37.5 bits (86), Expect = 0.016
Identities = 66/410 (16%), Positives = 122/410 (29%), Gaps = 100/410 (24%)
Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH--NFLRALTQ 354
HH+ +D + I++V + + D + +++
Sbjct: 3 HHHHMD----------FETGEHQYQYKDILSVFEDAF-----VDNFDCKDVQDMPKSILS 47
Query: 355 D------LITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVML 408
+++ LRL + + E + F L + Y + L+ P+
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYK--F----LMSPIKT 100
Query: 409 SLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTS-QPLSYV------- 460
S + Y + N + V L L L +P V
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 461 ---TSLRANVTGLGTVQ------VYVQLWTNY----DPNCLLTI--TLY--IDGDVIVQK 503
T + +V VQ ++ W N P +L + L ID + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 504 NTNCSRP----WVS--LKQLPWSPKYQVC----------ATLGEFPTDKPLLHC-ITITN 546
+ + + + L++L S Y+ C F + L C I +T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--N---LSCKILLTT 272
Query: 547 PFPSPPALPLAGPSTPTHSSHYTSLINLSNVL----SLCLVLLCVLIVILICVLVRKICR 602
F + + ++H SL + S L L+L + +
Sbjct: 273 RFKQ-----VTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDC---------RPQD 317
Query: 603 TPRN-STIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLS 651
PR T + I D + ++ + TTI+ SSL VL
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 46.1 bits (110), Expect = 6e-06
Identities = 28/82 (34%), Positives = 36/82 (43%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
L L NQ+ KLE F L+ L LDL N+L L L L L L N+L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 229 TVSVVAALQGLRSVTDLDLSHN 250
A L+S+T + L +N
Sbjct: 91 KSIPRGAFDNLKSLTHIWLLNN 112
Score = 46.1 bits (110), Expect = 6e-06
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
L + NQI LE F L+ L+ LDL +N++ + L+ LT L L+ N L++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 352 LTQDLITPLKSLQELRLDDN 371
+ + LKSL + L +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 39.5 bits (93), Expect = 0.001
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-----RLSSLKVL 270
T +VL L N++T L +T LDL +N L + +P +L+ L L
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL------TVLPAGVFDKLTQLTQL 83
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
S+ NQ S+ RGA L LT + +N D
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115
Score = 38.4 bits (90), Expect = 0.002
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
+ L L N + L P RL+ L L + +NQ + + G L +LT LS + NQ
Sbjct: 31 TTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 301 IDVLEDHSFRALSTLSHLDLAHN 323
+ + +F L +L+H+ L +N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 29.5 bits (67), Expect = 2.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L+ L L + +NQ + + G L +LT LS + NQ
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Score = 28.7 bits (65), Expect = 3.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ L LS+ NQ S+ RGA L LT + +N D
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 44.6 bits (106), Expect = 2e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
L ++NQI LE F L L L N++ A+ L+ LT LDL+ N L++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 352 LTQDLITPLKSLQELRLDDN 371
+ + LKSL + L +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 44.2 bits (105), Expect = 3e-05
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
+ RL L++NQ+ KLE F L +L L + NKL + L L L L N L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 229 TVSVVAALQGLRSVTDLDLSHN 250
A L+S+T + L +N
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYNN 115
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-----RLSSLKVL 270
+ L L N++T L ++ L + N L + +P +L+ L L
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL------TAIPTGVFDKLTQLTQL 86
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
+ N S+ RGA L LT + ++N D
Sbjct: 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118
Score = 38.0 bits (89), Expect = 0.003
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
L L++N + L P L +L+ L N+ +++ G L +LT L + N
Sbjct: 34 DKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 301 IDVLEDHSFRALSTLSHLDLAHN 323
+ + +F L +L+H+ L +N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 29.5 bits (67), Expect = 2.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L +L+ L N+ +++ G L +LT L + N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Score = 29.1 bits (66), Expect = 3.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 682
L+ L L + N S+ RGA L LT + ++N D
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 45.8 bits (108), Expect = 2e-05
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLS-NLTTLDLSHNF 348
L SC + ++E++ + L L+L++NR+ + +S+ + NL L+LS N
Sbjct: 152 LNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207
Query: 349 LRALTQDLITPLKS--LQELRLDDN 371
L++ + + +K L+EL LD N
Sbjct: 208 LKSERE--LDKIKGLKLEELWLDGN 230
Score = 36.1 bits (83), Expect = 0.026
Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 13/160 (8%)
Query: 55 SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKF 114
I + + PHT+ + + + + +L L + P
Sbjct: 88 ENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQAL---DLKGLRSDPDLV 144
Query: 115 LEG--VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN-LLSVVPTSALAPLAPNLD 171
+ V L+ + L+ I + L +L L NN L + S++ APNL
Sbjct: 145 AQNIDVVLNRRSCMAATLRIIEE-----NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 199
Query: 172 RLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQD 210
L+LS N+L KGL L L L N L +D
Sbjct: 200 ILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238
Score = 35.4 bits (81), Expect = 0.053
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 306 DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSL 363
D A + L+ + ++ L +L+LS+N L L ++ +L
Sbjct: 140 DPDLVAQNIDVVLNRRSCMAATLRIIEE-NIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 198
Query: 364 QELRLDDNDIS 374
+ L L N++
Sbjct: 199 KILNLSGNELK 209
Score = 31.1 bits (70), Expect = 1.0
Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 23/167 (13%)
Query: 129 ELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF 188
LK ++ + + + S P + L L P +++ + K + S
Sbjct: 76 ALKAVNYKILDRENRRISIIINS----SAPPHTILNELKPE--QVEQLKLIMSKRYDGSQ 129
Query: 189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
+ LDL L D + V+ + + + ++ + + + L+LS
Sbjct: 130 Q------ALDLKG-----LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLS 178
Query: 249 HNLLAGPLGPSTVPRLS-SLKVLSIAHNQFSSVRRGALAGLDKLTSL 294
+N L S++ + + +LK+L+++ N+ S LDK+ L
Sbjct: 179 NNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-----ERELDKIKGL 220
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 44.9 bits (106), Expect = 7e-05
Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 39/247 (15%)
Query: 161 SALAPLAPNLDRLDLSHNQ-----LYKLENTSFKGLSSLNF------------------- 196
+ ++ L + L +L L +L
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164
Query: 197 ----LDLSYNKLMTLSQDCLAP-------LVTLRVLRLQGNRLTVSVVAAL-QGLRSVTD 244
L + + L L L + +++ + + + RS+
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224
Query: 245 LDLSHNLLAGPLGP-STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
+ + + +G L S+ + + L KL L + +
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284
Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKS 362
+ F + + LDL + + +L NL L+ + + L K
Sbjct: 285 MP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343
Query: 363 LQELRLD 369
L+ LR++
Sbjct: 344 LKRLRIE 350
Score = 36.1 bits (83), Expect = 0.040
Identities = 33/238 (13%), Positives = 67/238 (28%), Gaps = 31/238 (13%)
Query: 161 SALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
+A +L + + ++ +L + L L+ + M L L
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH---- 274
L L + + LDL + LL + + + +L+VL +
Sbjct: 273 CRLGLS-YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331
Query: 275 -------NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST----LSHLDLAHN 323
++R + + + AL+ L ++ + +
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV---SQRGLIALAQGCQELEYMAVYVS 388
Query: 324 RIVAVSGASLA-HLSNLTTLDLSH---------NFLRALTQDLITPLKSLQELRLDDN 371
I S S+ +L NL L L + L+ K L+
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 41.9 bits (99), Expect = 2e-04
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 290 KLTSLSC-HHNQIDVLEDHSFRAL-------STLSHLDLAHNRIVAVSGASLAHL----S 337
L ++ + I + +A + + + R +LA + +
Sbjct: 37 DLEEVNLNNIMNIP---VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93
Query: 338 NLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDN 371
L +L++ NF+ AL + L + SL ELR+D+
Sbjct: 94 TLKSLNVESNFISGSGILALVEALQS-NTSLIELRIDNQ 131
Score = 41.5 bits (98), Expect = 3e-04
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 35/168 (20%)
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRL--------SSLKVLSIA-HNQFSSVRRGALAGL 288
GL SV + + V L+ +++ A A
Sbjct: 1 GLNSVIKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA 60
Query: 289 DK----LTSLSCHHNQIDVLEDHSFRAL-------STLSHLDLAHNRI-----VAVSGAS 332
K + S + + D AL +TL L++ N I +A+ A
Sbjct: 61 LKTNTYVKKFSIVGTRSN---DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA- 116
Query: 333 LAHLSNLTTLDLSHNFLR---ALTQDLITPLK---SLQELRLDDNDIS 374
L ++L L + + + ++ L+ +L +
Sbjct: 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164
Score = 40.4 bits (95), Expect = 6e-04
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 32/151 (21%)
Query: 217 TLRVLRL-QGNRLTVSVVA----ALQGLRSVTDLDLSHNLLAGPLGPSTVPRL------- 264
L + L + V + AL+ V + L
Sbjct: 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT----RSNDPVAFALAEMLKVN 92
Query: 265 SSLKVLSIAHNQFSSVRRGALA---GL---DKLTSLSCHHNQIDVLEDHSFRAL------ 312
++LK L++ N S G LA L L L + L ++ +
Sbjct: 93 NTLKSLNVESNFISG--SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEK 149
Query: 313 -STLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
+TL + AS A ++N +
Sbjct: 150 NTTLLKFGYHFTQQGPRLRASNAMMNNNDLV 180
Score = 32.3 bits (74), Expect = 0.28
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 313 STLSHLDLA-HNRIVAVSGASLAHL----SNLTTLDLSHNFLR-ALTQDLITPLK---SL 363
L ++L I + + A + + + + L LK +L
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95
Query: 364 QELRLDDNDISME 376
+ L ++ N IS
Sbjct: 96 KSLNVESNFISGS 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 41.0 bits (96), Expect = 8e-04
Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 14/209 (6%)
Query: 168 PNLDRLDLSHNQL-YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG- 225
+ +DLS++ + + S L L L +L + LA L L L G
Sbjct: 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152
Query: 226 NRLTVSVVAAL-QGLRSVTDLDLS--HNLLAGPLGPSTVPRLSSLKVLSIA--HNQFSSV 280
+ + + L + +L+LS + + + ++ L+++
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212
Query: 281 RRGALA-GLDKLTSLSCHHNQIDVLEDHSFRALST---LSHLDLAH-NRIVAVSGASLAH 335
L L L + + L++ F+ L HL L+ I+ + L
Sbjct: 213 DLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
+ L TL + Q L L LQ
Sbjct: 271 IPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299
Score = 34.1 bits (78), Expect = 0.13
Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 21/180 (11%)
Query: 206 TLSQDCLAPLVTLRVLRLQGNR-LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
L D L++ V+ + R +A V +DLS++++ + +
Sbjct: 58 NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLS---CHHNQIDVLEDHSFRALST----LSH 317
S L+ LS+ + S LA L L+ C + + + L + L
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-----FSEFALQTLLSSCSRLDE 172
Query: 318 LDLAHNRIV---AVSGASLAHLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDD 370
L+L+ V A +T L+LS + + L L+ +L L L D
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSD 231
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.9 bits (83), Expect = 0.008
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
+ L L N + A+ L L L T L N R
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 35.9 bits (83), Expect = 0.009
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
+ T L L+ N L AL L+ L +L+ L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.0 bits (78), Expect = 0.040
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
+ L L+ N L L L +L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 33.2 bits (76), Expect = 0.077
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
L L+ N L L L L LR L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.9 bits (75), Expect = 0.11
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 256 LGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
L +++P L + N +++ G L L L + N
Sbjct: 20 LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 32.1 bits (73), Expect = 0.19
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
L + N +++ G L L L + N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 31.3 bits (71), Expect = 0.41
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL 180
L L N L+ +P L L P L L N
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDAL-PALRTAHLGANPW 67
Score = 30.5 bits (69), Expect = 0.60
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
T L N + L AL L L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 28.2 bits (63), Expect = 3.9
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
V L L GN LT L L ++ L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 34.4 bits (79), Expect = 0.050
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH-------LD 319
++ + + S+ + GL + + +ED LS L + ++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLENLQKSMLEME 120
Query: 320 LAHNRIVAVSG-ASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSLQELRLD 369
+ V G +L H NL L LS ++ + + SL L L
Sbjct: 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 33.7 bits (77), Expect = 0.10
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 6/118 (5%)
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG-NRLTVSVVAALQGL----R 240
T + +D + + +M++ D + L + +RL + + + L L +
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCH 297
S+ ++++ G + +LK L ++ + A L SL
Sbjct: 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 28.3 bits (63), Expect = 5.5
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339
+R GA+ + + L + +D + I+++ + L +
Sbjct: 32 LRCGAMV---RYHGQQRWQKDYNHLPTGPLDKY-KIQAIDATDSCIMSIGFDHMEGLQYV 87
Query: 340 TTLDLSH------NFLRALTQDLITPLKSLQELRLDDN 371
+ L L L+Q L KS+ E+ +
Sbjct: 88 EKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISC 124
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 31.0 bits (70), Expect = 0.81
Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL---SSLKVLSIAHNQFSSVRRGALA 286
S++ A + + L++ ++ + + SL+VL++ N +
Sbjct: 60 RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP--ELLAR 117
Query: 287 ---GLDK---LTSLSCHHNQIDVLEDHSFRAL-------STLSHLDLAHNRIVAVSGASL 333
+ + + VL + + +L + ++ + A S
Sbjct: 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSE 177
Query: 334 AHLSNLTTL 342
A N +
Sbjct: 178 ALERNYERV 186
Score = 31.0 bits (70), Expect = 0.87
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 21/101 (20%)
Query: 291 LTSLSCHHNQIDVLEDHSFRAL-------STLSHLDLAHNRIVAVSGASLAH--LSN--L 339
+ S + I D R L +L L++ N + A L L +
Sbjct: 72 IEKFSLANTAIS---DSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSI 128
Query: 340 TTLDLSHNFLRAL----TQDLITPLK---SLQELRLDDNDI 373
+ L D++ ++ SL + + +
Sbjct: 129 VEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 313 STLSHLDL-AHNRIVAVSGASLAHL----SNLTTLDLSHNFLRALTQDLITPL----KSL 363
+ L +++ R+ SL ++ L++ + + L SL
Sbjct: 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100
Query: 364 QELRLDDNDISME 376
+ L ++ N ++ E
Sbjct: 101 RVLNVESNFLTPE 113
Score = 29.4 bits (66), Expect = 3.1
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 16/110 (14%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLV----TLRVLRLQGNRLT----VSVVAALQGLRSVT 243
+ L+ + L L+ +LRVL ++ N LT ++ + +S+
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129
Query: 244 DLDLSHNLLAGPLGPSTVPRL-------SSLKVLSIAHNQFSSVRRGALA 286
+ N LG + SL + I+ + R + A
Sbjct: 130 EFKAD-NQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEA 178
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 29.1 bits (65), Expect = 3.8
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 93 PDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKN 132
P++ L +C L + +L + + L + + ++
Sbjct: 15 PEQLPLLTNCQLEDEAILENHLYQQIDLPNQEVRNLVFRD 54
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 29.7 bits (67), Expect = 3.8
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 23 LLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCP 57
L+ T+ + S+ T + P P T P S
Sbjct: 358 LISTLKKALGLQSASCTAPAQ-PIEPITAAPGSHH 391
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 29.3 bits (66), Expect = 4.6
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 467 VTGLGTVQVY------VQLWTNYDPNCLLTITLY-IDGDVIVQKNTNCSRPWVSLKQLP 518
G G + N + + DG VI ++ R +S +Q+
Sbjct: 5 ALGYGVALFDKVRVPQTEELVNQVKDISSISEITYSDGTVIASIESDMLRTSISSEQIS 63
>3dkz_A Thioesterase superfamily protein; Q7W9W5, borpa, PF03061, NESG,
BPR208C, structural genomics, PSI-2, protein structure
initiative; 2.40A {Bordetella parapertussis}
Length = 142
Score = 28.1 bits (63), Expect = 5.8
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
L ++ LD + + + T+D++ +F+ DL+
Sbjct: 52 TLMSV--LDFT----LGAAIRGDTPEVGVATIDMNTSFMSPGRGDLV 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,986,996
Number of extensions: 580725
Number of successful extensions: 6442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2082
Number of HSP's successfully gapped: 995
Length of query: 694
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 594
Effective length of database: 3,909,693
Effective search space: 2322357642
Effective search space used: 2322357642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)