RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8879
(694 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 73.5 bits (179), Expect = 9e-15
Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 20/286 (6%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
+ C+ + +P L L + + ++ I DG F L + L L L NN +S +
Sbjct: 15 VQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKIS 71
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
A APL L+RL LS NQL +L K L L + K+ + L + +
Sbjct: 72 PGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVV 129
Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQF 277
L + + A QG++ ++ + ++ + +T+P+ SL L + N+
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------TTIPQGLPPSLTELHLDGNKI 183
Query: 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
+ V +L GL+ L L N I +++ S L L L +N++V V G LA
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHK 242
Query: 338 NLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISMEP 377
+ + L +N + A+ + P S + L N +
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
Score = 73.1 bits (178), Expect = 1e-14
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 5/232 (2%)
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
L P+ LDL +N++ ++++ FK L +L+ L L NK+ +S APLV L
Sbjct: 23 EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
L L N+L + L+ + + + + + L + S
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSG 140
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339
+ GA G+ KL+ + I + +L+ L L N+I V ASL L+NL
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNL 197
Query: 340 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
L LS N + A+ + L+EL L++N + P + + L
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249
Score = 51.6 bits (122), Expect = 1e-07
Identities = 59/319 (18%), Positives = 115/319 (36%), Gaps = 69/319 (21%)
Query: 55 SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKF 114
CP C C L ++C+ L + + L +LLD + +T +
Sbjct: 3 VCPF----RCQCHL-RVVQCSDLG--LEKVPKDL-----PPDTALLDLQNNKITEIKDGD 50
Query: 115 LEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP-------- 165
+ + LH L++ + ++ IS GAF L L+ L L N L +P
Sbjct: 51 FKNLKNLHTLILINNKISKISPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHE 109
Query: 166 --------------LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ L + + +EN +F+G+ L+++ ++ + T+ Q
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 169
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG-------------- 257
+L L L GN++T A+L+GL ++ L LS N ++
Sbjct: 170 PP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226
Query: 258 --------PSTVPRLSSLKVLSIAHNQFSSVRRGALAG------LDKLTSLSCHHNQIDV 303
P + ++V+ + +N S++ + +S N +
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
Query: 304 LEDH--SFRALSTLSHLDL 320
E +FR + + + L
Sbjct: 287 WEIQPSTFRCVYVRAAVQL 305
Score = 49.7 bits (117), Expect = 6e-07
Identities = 26/121 (21%), Positives = 44/121 (36%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L +N+I ++D F+ L L L L +N+I +S + A L L L LS N L+
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSL 410
L + + L+ L+ + + ++L M L
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 411 C 411
Sbjct: 153 S 153
Score = 48.5 bits (114), Expect = 1e-06
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L + C ++ + + LDL +N+I + +L NL TL L +N +
Sbjct: 12 LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIY 381
++ PL L+ L L N + PE +
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKMP 99
Score = 33.1 bits (74), Expect = 0.086
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
L +L + +N+ + ++ G L L +L +N+I + +F+
Sbjct: 29 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 73.5 bits (179), Expect = 2e-14
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 17/199 (8%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L ++NQ+ + ++L+ L L+ N+L + LA L L L L N++ S
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SN 255
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
+A L GL +T+L L N ++ S + L++L L + NQ + + L LT
Sbjct: 256 LAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISPIS--NLKNLT 310
Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
L+ + N I + +L+ L L A+N++ VS SLA+L+N+ L HN + L
Sbjct: 311 YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL 366
Query: 353 TQDLITPLKSLQELRLDDN 371
T + L + +L L+D
Sbjct: 367 TP--LANLTRITQLGLNDQ 383
Score = 73.1 bits (178), Expect = 2e-14
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 19/196 (9%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N + + P + NLD L L+ NQL + + L++L LDL+ N++ L+
Sbjct: 207 NQISDITPL----GILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA--P 258
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
L+ L L L+L N+++ ++ L GL ++T+L+L+ N S + L +L L+
Sbjct: 259 LSGLTKLTELKLGANQIS--NISPLAGLTALTNLELNEN---QLEDISPISNLKNLTYLT 313
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
+ N S + ++ L KL L +N++ + S L+ ++ L HN+I ++
Sbjct: 314 LYFNNISDI--SPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLT-- 367
Query: 332 SLAHLSNLTTLDLSHN 347
LA+L+ +T L L+
Sbjct: 368 PLANLTRITQLGLNDQ 383
Score = 64.3 bits (155), Expect = 2e-11
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 15/188 (7%)
Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
L++L L + N++ ++ + L L L GN+L + L L ++TDLDL++N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251
Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
++ S L+ L L + NQ S++ LAGL LT+L + NQ++ +
Sbjct: 252 QISNLAPLS---GLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE--DISPIS 304
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
L L++L L N I +S ++ L+ L L ++N + ++ + L ++ L
Sbjct: 305 NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGH 360
Query: 371 NDISMEPE 378
N IS
Sbjct: 361 NQISDLTP 368
Score = 50.4 bits (119), Expect = 4e-07
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 30/164 (18%)
Query: 132 NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE------- 184
+ D + + L L L NN +S + + L L L NQ+ +
Sbjct: 230 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKLGANQISNISPLAGLTA 286
Query: 185 -------------NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
+ L +L +L L +N + +S ++ L L+ L N+++
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS-- 342
Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
V++L L ++ L HN ++ + L+ + L +
Sbjct: 343 DVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383
Score = 43.5 bits (101), Expect = 7e-05
Identities = 66/383 (17%), Positives = 122/383 (31%), Gaps = 49/383 (12%)
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
+ +V + S L ++ L I ++ G + +L+NLT ++ S+N L IT
Sbjct: 30 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD-----IT 82
Query: 359 PLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVT 418
PLK+L +L D ++ + + T +
Sbjct: 83 PLKNLT--KLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-----------ITDIDPLK 129
Query: 419 RYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQ 478
L SN + + + G + + L L + +L T +
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL--------TTLERLD 181
Query: 479 LWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPL 538
+ +N + + L +I N Q+ + L E +
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNN-----------QISDITPLGILTNLDELSLNGNQ 230
Query: 539 LHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVR 598
L I + L LA S+ L L+ + L L + + + L
Sbjct: 231 LKDIGTLASLTNLTDLDLAN----NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286
Query: 599 KICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFS 658
+ + + + N+ S + + L+ L+ L A+N+ S
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS----LTKLQRLFFANNKVS 342
Query: 659 SVRRGALAGLDKLTSLSCHHNQI 681
V +LA L + LS HNQI
Sbjct: 343 DVS--SLANLTNINWLSAGHNQI 363
Score = 37.7 bits (86), Expect = 0.004
Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
LD++T+L I ++ L+ L+ ++ ++N++ ++ L +L+ L + +
Sbjct: 40 QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILM 95
Query: 345 SHNF 348
++N
Sbjct: 96 NNNQ 99
Score = 36.5 bits (83), Expect = 0.008
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 20/224 (8%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
NL +++ S+NQL + K L+ L + ++ N++ ++ +T L
Sbjct: 66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123
Query: 228 LTVSVVAA------------LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
+ + + +++ L L G P + + + +
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183
Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
LA L L SL +NQI + + L L L N++ + +LA
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIG--TLAS 239
Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
L+NLT LDL++N + L ++ L L EL+L N IS
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 281
Score = 33.8 bits (76), Expect = 0.061
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N+ V + L + L + ++ + L++L ++ S N+L ++
Sbjct: 32 TNVTDTVSQTDL----DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-- 83
Query: 212 LAPLVTLRVL 221
L L L +
Sbjct: 84 LKNLTKLVDI 93
Score = 32.3 bits (72), Expect = 0.18
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
++ + V+ + L VT L + G V L++L ++ ++NQ +
Sbjct: 24 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTD 80
Query: 280 VRRGALAGLDKLTSLSCHHNQ 300
+ L L KL + ++NQ
Sbjct: 81 IT--PLKNLTKLVDILMNNNQ 99
Score = 30.4 bits (67), Expect = 0.73
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 679
L+++ LS HNQ S + LA L ++T L +
Sbjct: 350 LTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383
Score = 29.2 bits (64), Expect = 1.7
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
L + L+ + + ++ L ++T ++ S+N L + +L +
Sbjct: 40 QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 93
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 62.5 bits (150), Expect = 3e-11
Identities = 59/248 (23%), Positives = 86/248 (34%), Gaps = 31/248 (12%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK-------- 203
L VP + R+ L N++ + SF+ +L L L N
Sbjct: 20 QQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 204 -----------------LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
L ++ L L L L L +GL ++ L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
L N L L T L +L L + N+ SSV A GL L L H N++ +
Sbjct: 136 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
H+FR L L L L N + A+ +LA L L L L+ N LQ+
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKF 253
Query: 367 RLDDNDIS 374
R +++
Sbjct: 254 RGSSSEVP 261
Score = 54.4 bits (129), Expect = 1e-08
Identities = 52/196 (26%), Positives = 75/196 (38%)
Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
++ + L N++ + L +L L N L AA GL + LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
+ P+T L L L + + G GL L L N + L D +FR
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
L L+HL L NRI +V + L +L L L N + + L L L L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 372 DISMEPECIYVGFNTM 387
++S P +
Sbjct: 212 NLSALPTEALAPLRAL 227
Score = 52.5 bits (124), Expect = 6e-08
Identities = 57/277 (20%), Positives = 96/277 (34%), Gaps = 24/277 (8%)
Query: 94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
+E C + +P + + + ++ +F + L L L +N
Sbjct: 10 NEPKVTTSCPQQGLQAVPVGIPAASQR--IFLHGNRISHVPAASFRACRN-LTILWLHSN 66
Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA 213
+L+ + +A LA + QL ++ +F GL L+ L L L L
Sbjct: 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
L L+ L LQ N L + L ++T L L N ++ + L SL L +
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLH 185
Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV------- 326
N+ + V A L +L +L N + L + L L +L L N V
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245
Query: 327 -------------AVSGASLAHLSNLTTLDLSHNFLR 350
V + L+ L+ N L+
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 56.6 bits (135), Expect = 2e-09
Identities = 40/196 (20%), Positives = 62/196 (31%), Gaps = 9/196 (4%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
L+ +P L + L LS N LY + + L L+L +L L D
Sbjct: 19 KRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
P++ L + + L L + L + L L+ L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT----SLPLGALRGLGELQELY 130
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
+ N+ ++ G L KL LS +N + L L L L L N + +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-K 189
Query: 332 SLAHLSNLTTLDLSHN 347
L L N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 47.8 bits (112), Expect = 2e-06
Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 24/205 (11%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
++S ++ L L D +L L N L +A L +T L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAH--------------------NQFSSVRRGALA 286
L L T+P L +L + N+ +S+ GAL
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
GL +L L N++ L L L LA+N + + L L NL TL L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 347 NFLRALTQDLITPLKSLQELRLDDN 371
N L + + L L N
Sbjct: 182 NSLYTIPKGFF-GSHLLPFAFLHGN 205
Score = 35.5 bits (80), Expect = 0.016
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY 381
+ T L LS N L + + P L +L LD +++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT 75
Score = 34.7 bits (78), Expect = 0.026
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
++N L +L GL +L+ L L N L T+ + L L GN
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPW 207
Score = 31.6 bits (70), Expect = 0.27
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
NN L+ +P L L NLD L L N LY + F G L F L N
Sbjct: 157 NNNLTELPAGLLNGL-ENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW 207
Score = 28.9 bits (63), Expect = 2.1
Identities = 40/183 (21%), Positives = 51/183 (27%), Gaps = 48/183 (26%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ-------------------- 179
L L L NLL + L P L +L+L +
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86
Query: 180 -------------------------LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
L L + +GL L L L N+L TL L P
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
L L L N LT L GL ++ L L N L P L +
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHG 204
Query: 275 NQF 277
N +
Sbjct: 205 NPW 207
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 48.2 bits (114), Expect = 2e-07
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L L+H L L + + L + LDLS+N+L LA L L VL+ N +
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA--LEN 57
Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS---SVRRGALAGLD 289
V + L + +L L +N L + L +L++ N ++ L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 290 KLTSL 294
++S+
Sbjct: 118 SVSSI 122
Score = 43.6 bits (102), Expect = 8e-06
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
RVL L LTV + L+ L VT LDLSHN L P + L L+VL + N
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALE 56
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSG---ASLA 334
+V +A L +L L +N++ + L L+L N + G
Sbjct: 57 NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
Query: 335 HLSNLTTL 342
L +++++
Sbjct: 115 MLPSVSSI 122
Score = 39.7 bits (92), Expect = 2e-04
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 12/128 (9%)
Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
+ L L + L+V+ L L + LDLSHN+L + L L L S N L
Sbjct: 1 RVLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 56
Query: 206 TLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLG-----PS 259
+ L L+ L L NRL + + L + L+L N L G
Sbjct: 57 NVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114
Query: 260 TVPRLSSL 267
+P +SS+
Sbjct: 115 MLPSVSSI 122
Score = 32.8 bits (74), Expect = 0.039
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
L LAH + + L L +T LDLSHN LRAL L +L+ L + +
Sbjct: 3 LHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56
Query: 378 ECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTR 413
V EL+ R L C R
Sbjct: 57 NVDGVANLPRLQELLLCN-NRLQQSAAIQPLVSCPR 91
Score = 28.1 bits (62), Expect = 1.8
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHS 400
L L+H L L + L + L L N + P + L+ + +
Sbjct: 2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Score = 25.8 bits (56), Expect = 9.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 648 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
+VL +AH + + L L +T L HN++
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRL 32
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 51.1 bits (120), Expect = 3e-07
Identities = 45/409 (11%), Positives = 101/409 (24%), Gaps = 19/409 (4%)
Query: 291 LTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVS----GASLAHLSNLTTLDLS 345
+ SL ++ D L + L + ++L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 346 HNFL-----RALTQDLITPLKSLQELRLDDNDI---SMEPECIYVGFNTMDLELIYSGVW 397
N L + Q L TP +Q+L L + + + EL S
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 398 RHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPL 457
L + L + + + + ++ ++++ + L +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 458 SYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQL 517
+ V L + ++L + + I + + +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 518 PWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNV 577
+ + + + + +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 578 LSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKL 637
L C L + + S++ F+ Q ++ + +
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ- 362
Query: 638 QATTILLSSLKVLSIAHNQFSSVRRGALA----GLDKLTSLSCHHNQID 682
S L+VL +A S +LA L L +N +
Sbjct: 363 -GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410
Score = 48.8 bits (114), Expect = 2e-06
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 306 DHSFRALSTLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDL 356
+ S L L LA + S +SLA +L LDLS+N L L + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 357 ITPLKSLQELRLDDNDISME 376
P L++L L D S E
Sbjct: 422 RQPGCLLEQLVLYDIYWSEE 441
Score = 44.6 bits (103), Expect = 3e-05
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 193 SLNFLDLSYNKLMTLSQDCLAP-LVTLRVLRLQGNRLT----VSVVAALQGLRSVTDLDL 247
+ LD+ +L L P L +V+RL LT + +AL+ ++ +L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 248 SHNLL----AGPLGPSTVPRLSSLKVLSIAHNQF 277
N L + ++ LS+ +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
Score = 43.4 bits (100), Expect = 6e-05
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL----YKLENTSFKGLSSLNFL 197
S +Q+L + LS + L PL + L L K +++ + +L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
+L N+L + C+ + ++Q L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 43.4 bits (100), Expect = 8e-05
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 25/113 (22%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
+ LD+ L+ +P L +V+ + + R ++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-------------- 48
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNF 348
+ R L+ L+L N + V + + L L +
Sbjct: 49 ------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 40.3 bits (92), Expect = 6e-04
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 26/109 (23%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
S L+VL +A S +LA + A +L LDL++N
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLA--------------------ATLLANHSLRELDLSNNC 408
Query: 325 IVAVSGASLA-----HLSNLTTLDLSHNFLRALTQDLITPL-KSLQELR 367
+ L L L L + +D + L K LR
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457
Score = 39.6 bits (90), Expect = 0.001
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 168 PNLDRLDLSHNQL----YKLENTSFKGLSSLNFLDLSYNKL-----MTLSQDCLAPLVTL 218
L L L+ + + SL LDLS N L + L + P L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 219 RVLRLQGNRLTVSVVAALQGLR 240
L L + + LQ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALE 450
Score = 36.1 bits (81), Expect = 0.014
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 338 NLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISME 376
++ +LD+ L +L+ L+ Q +RLDD ++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA 42
Score = 35.0 bits (78), Expect = 0.029
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 188 FKGLSSLNFLDLSYNKLMTLS----QDCLAPLVTLRVLRLQGNRLTVSVVAAL-QGLRS- 241
+ S L L L+ + S L +LR L L N L + + L + +R
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 242 ---VTDLDLSHNLL 252
+ L L
Sbjct: 425 GCLLEQLVLYDIYW 438
Score = 29.6 bits (64), Expect = 1.7
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 28/123 (22%)
Query: 234 AALQGLRSVTDLDLSHNLLAGPLG---PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
Q + L L+ ++ +T+ SL+ L +++N AG+ +
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD------AGILQ 416
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
L L L L S L L+ LR
Sbjct: 417 LVESVRQPG-------------CLLEQLVLYDIYW------SEEMEDRLQALEKDKPSLR 457
Query: 351 ALT 353
++
Sbjct: 458 VIS 460
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 49.4 bits (116), Expect = 8e-07
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
+ N +L L++++N+++ + A L L S N L + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322
Query: 356 LITPLKSLQELRLDDNDISMEPECI 380
++L++L ++ N + P+
Sbjct: 323 ----PQNLKQLHVEYNPLREFPDIP 343
Score = 46.0 bits (107), Expect = 9e-06
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
L+ L + NN L +P L P L+RL S N L ++ +L L + YN L
Sbjct: 286 LEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPL 336
Query: 205 MTLSQDCLAPLVTLRV 220
D + LR+
Sbjct: 337 REFP-DIPESVEDLRM 351
Score = 43.3 bits (100), Expect = 6e-05
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA 234
N + SL L++S NKL+ L A L L N L V
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA-EVPE 321
Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
Q L+ L + +N L P + L++
Sbjct: 322 LPQNLKQ---LHVEYNPLREF--PDIPESVEDLRM 351
Score = 42.5 bits (98), Expect = 1e-04
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
SL+ L++++N+ + A +L L N + + + L L + +N
Sbjct: 283 PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYN 334
Query: 324 RIVAVSGASLAHLSNLTTLDLS 345
+ ++ L ++
Sbjct: 335 PLREFP----DIPESVEDLRMN 352
Score = 39.4 bits (90), Expect = 0.001
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
N + +L L + N+L + A L L S N L
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL------ 316
Query: 259 STVPR-LSSLKVLSIAHNQFSSV 280
+ VP +LK L + +N
Sbjct: 317 AEVPELPQNLKQLHVEYNPLREF 339
Score = 37.9 bits (86), Expect = 0.004
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
R +AVS L+L++ L +L + L+ L N ++ PE
Sbjct: 23 EQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELP 77
Score = 36.3 bits (82), Expect = 0.010
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200
L L L N LS +P L P+L+ L S N L +L SL L +
Sbjct: 36 LDRQAHELELNNLGLSSLP-----ELPPHLESLVASCNSLTELPEL----PQSLKSLLVD 86
Query: 201 YNKLMTLSQDC 211
N L LS
Sbjct: 87 NNNLKALSDLP 97
Score = 36.0 bits (81), Expect = 0.015
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 295 SCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 354
+ ++ F LS L N + +L L++S+N L L
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA 301
Query: 355 DLITPLKSLQELRLDDNDISMEPECI 380
L+ L N ++ PE
Sbjct: 302 L----PPRLERLIASFNHLAEVPELP 323
Score = 32.5 bits (72), Expect = 0.18
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
+ L ++ + L + L L + N + + +L +L + +N L
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNL 90
Query: 350 RAL 352
+AL
Sbjct: 91 KAL 93
Score = 31.3 bits (69), Expect = 0.38
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 599 KICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFS 658
+ P++ T + I E N ++ ++++ L SL+ L++++N+
Sbjct: 238 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 297
Query: 659 SVRRGALAGLDKLTSLSCHHNQIDVLEDH 687
+ A +L L N + + +
Sbjct: 298 ELP----ALPPRLERLIASFNHLAEVPEL 322
Score = 30.9 bits (68), Expect = 0.56
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 686
L L+ L + N + V L L +N + D
Sbjct: 302 LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD 341
Score = 29.8 bits (65), Expect = 1.3
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPR-LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
R +L+L++ L S++P L+ L + N + + L SL +
Sbjct: 38 RQAHELELNNLGL------SSLPELPPHLESLVASCNSLTELP----ELPQSLKSLLVDN 87
Query: 299 NQIDVLEDH 307
N + L D
Sbjct: 88 NNLKALSDL 96
Score = 27.9 bits (60), Expect = 4.4
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR-LSSLKVLSIAHNQ 276
L L L+ S+ L S L S N L + +P SLK L + +N
Sbjct: 40 AHELELNNLGLS-SLPELPPHLES---LVASCNSL------TELPELPQSLKSLLVDNNN 89
Query: 277 FSSV 280
++
Sbjct: 90 LKAL 93
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 46.2 bits (108), Expect = 4e-06
Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 23/208 (11%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+N+ V + L + L + +E + L++L L+L N++ L+
Sbjct: 29 SNVTDTVTQADL----DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLK 82
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL- 270
+T L + ++ ++ + L +
Sbjct: 83 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142
Query: 271 ------------SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
++ LA L KLT+L N+I + +L L +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEV 200
Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSH 346
L +N+I VS LA+ SNL + L++
Sbjct: 201 HLKNNQISDVS--PLANTSNLFIVTLTN 226
Score = 36.5 bits (83), Expect = 0.007
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
AL+ + + + + A L +TTL + + + L +L L L D
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 371 NDISMEPEC 379
N I+
Sbjct: 73 NQITDLAPL 81
Score = 35.8 bits (81), Expect = 0.012
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
L ++ + + + + L ++ L + + G + +L+NL L+L
Sbjct: 16 PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71
Query: 346 HNFL 349
N +
Sbjct: 72 DNQI 75
Score = 31.9 bits (71), Expect = 0.19
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
P L++ ++ + + A LD +T+LS + +E + L+ L L+L
Sbjct: 16 PALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71
Query: 322 HNRI 325
N+I
Sbjct: 72 DNQI 75
Score = 30.8 bits (68), Expect = 0.50
Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 21/228 (9%)
Query: 151 PNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD 210
P + + P ALA N ++ + + + + L + L + T+
Sbjct: 6 PTAINVIFPDPALA----NAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIE-- 57
Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
+ L L L L+ N++T + +L + + +
Sbjct: 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-------KNVSAIAGLQSIK 110
Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
++ LAGL L L NQI + +
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS----IGNAQVSDL 166
Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
LA+LS LTTL N + ++ + L +L E+ L +N IS
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 26.9 bits (58), Expect = 8.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 675
L +L + + +NQ S V LA L ++
Sbjct: 194 LPNLIEVHLKNNQISDV--SPLANTSNLFIVT 223
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 45.7 bits (106), Expect = 8e-06
Identities = 31/220 (14%), Positives = 69/220 (31%), Gaps = 7/220 (3%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+ ++ +P+ L N L +L ++ +F G L +++S N ++ + +
Sbjct: 17 ESKVTEIPSD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72
Query: 212 LAPLVTLRVLRLQ---GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268
+ + N L ++ A L + + P L
Sbjct: 73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132
Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
+ N + R + + L + N I + + +F +N + +
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192
Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
S LD+S + +L + LK L+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 41.0 bits (94), Expect = 2e-04
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
+N ++ L + F S LD++ RI ++ L +L L +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 39.1 bits (89), Expect = 0.001
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
+ +N L +L N F G S LD+S ++ +L L L LR +
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 37.6 bits (85), Expect = 0.003
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK 203
LD+S +++ L + + L L K
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 37.2 bits (84), Expect = 0.004
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
L S +L I+ + S+ L L KL + S ++ +
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 36.8 bits (83), Expect = 0.006
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 680
S +L I+ + S+ L L KL + S ++ +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 33.7 bits (75), Expect = 0.056
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
+N + G L +I L + L L + +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 31.8 bits (70), Expect = 0.23
Identities = 14/78 (17%), Positives = 26/78 (33%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
L L+ N + ++ N +F G N L L D +L + R+
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 233 VAALQGLRSVTDLDLSHN 250
L+ L+ + +
Sbjct: 218 SYGLENLKKLRARSTYNL 235
Score = 31.0 bits (68), Expect = 0.36
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQ 276
G LD+S + L + L L+ S + +
Sbjct: 196 VFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLK 236
Score = 29.1 bits (63), Expect = 1.5
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 322 HNRIVAVSGASLAHL-----SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
NR+ + + + N L LR + + + L+++ + ND+
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 377 PECIYVGFNTMDLELIYSGVWRH 399
E E+
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNL 91
Score = 28.7 bits (62), Expect = 1.9
Identities = 6/57 (10%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
C +++ + R L ++ + + + +L +++S N
Sbjct: 11 RVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64
Score = 27.6 bits (59), Expect = 5.3
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 654 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
+N + G L +I L + N
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.3 bits (96), Expect = 8e-05
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
+ + ++ S L + L+ + L + L
Sbjct: 13 KLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRII-EENIPELLS 69
Query: 318 LDLAHNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
L+L++NR+ + + + NL L+LS N L++ + L+EL LD N +S
Sbjct: 70 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128
Score = 38.6 bits (89), Expect = 7e-04
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYN 202
L +++ + + + P L L+LS+N+LY+L++ + + +L L+LS N
Sbjct: 44 DVVLNRRSSMAATLRI--IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 101
Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLT 229
+L + + + L L L GN L+
Sbjct: 102 ELKSERELDKIKGLKLEELWLDGNSLS 128
Score = 35.2 bits (80), Expect = 0.010
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
S LDL L + VL+ + +++R + +L SL+ +N+
Sbjct: 23 SQQALDLKGLRSDPDLVA-----QNIDVVLNRRSSMAATLR-IIEENIPELLSLNLSNNR 76
Query: 301 IDVLED--HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
+ L+D + L L+L+ N + + L L L N L +D T
Sbjct: 77 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
Query: 359 PLKSLQEL-----RLDDNDIS 374
+ +++E RLD +++
Sbjct: 137 YISAIRERFPKLLRLDGHELP 157
Score = 29.0 bits (64), Expect = 1.2
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS--QDCLAPLVTLRVLRLQG 225
L+ + L + + L L+LS N+L L + L++L L G
Sbjct: 42 NIDVVLNRRSSMAATLRII-EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 100
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
N L + +L L N L+ + + +
Sbjct: 101 NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145
Score = 28.6 bits (63), Expect = 1.6
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 145 LQALGLPNNLLSVV-PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK 203
L +L L NN L + S++ APNL L+LS N+L L L L N
Sbjct: 67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126
Query: 204 LMTLSQD 210
L +D
Sbjct: 127 LSDTFRD 133
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 42.4 bits (98), Expect = 1e-04
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
L+ NR+ ++ L L+ + L++S N L G + L V + A+N+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKC 303
Score = 39.3 bits (90), Expect = 0.001
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
NL+ LDL +N++Y L L+ L++S+N L L V N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANNK 302
Query: 228 L 228
Sbjct: 303 C 303
Score = 39.3 bits (90), Expect = 0.001
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
+ L+ LDL +NRI L L L +L++S N L
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 354 QDLITPLKSLQELRLDDN 371
L+ +N
Sbjct: 285 PQG-GNLQRFDVSAYANN 301
Score = 32.8 bits (73), Expect = 0.13
Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 6/236 (2%)
Query: 145 LQALGLPNNLLSVVPT--SALAPLAPNLDRLDLSHN-QLYKLENTSFKGLSSLNFLDLSY 201
+ L L L S+LA L P L+ L + L + L+ L++L +++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
+ D L+ + TL L N L+ ++ ++ L ++ + N ++G + S
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
++I+ N+ + A L+ + +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS--DKNTQKIHL 228
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
+A + NL LDL +N + +T LK L L + N++ E
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 30.1 bits (66), Expect = 0.84
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 26/79 (32%)
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
DL +N + G L P + +L L L+++ N E
Sbjct: 250 DLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCG-------------------------E 283
Query: 306 DHSFRALSTLSHLDLAHNR 324
L A+N+
Sbjct: 284 IPQGGNLQRFDVSAYANNK 302
Score = 28.6 bits (62), Expect = 2.5
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 238 GLRSVTDLDLSHNLLAGPLG-PSTVPRLSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLS 295
V +LDLS L P PS++ L L L I A+A L +L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
H + + TL LD ++N + S++ L NL + N +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 42.6 bits (98), Expect = 1e-04
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 296 CHHNQI------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA-----HLSNLTTLDL 344
+ + V++ S L L L +N I + +L + +L L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 345 SHNFLRALTQDLITPLKSLQELR-------LDDND 372
+ N D++ ++ + R LDD +
Sbjct: 310 NGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343
Score = 40.2 bits (92), Expect = 6e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 335 HLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDISMEPECI 380
L TL L +N + R L + + L L L+ N S E + +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321
Score = 36.0 bits (81), Expect = 0.013
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 168 PNLDRLDLSHNQL-----YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222
L L L +N++ L+ + + L FL+L+ N+ D + + + R
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED-DVVDEIREVFSTR 331
Query: 223 LQGN 226
+G
Sbjct: 332 GRGE 335
Score = 34.5 bits (77), Expect = 0.035
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDD 370
L + +V A L ++ + LS N + + I K L+ D
Sbjct: 10 LKLDAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 371 NDISMEPECI 380
+ I
Sbjct: 69 IFTGRVKDEI 78
Score = 34.1 bits (76), Expect = 0.048
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI----VAVSGASLAHLSNLTTLDLS 345
L + + ++ + L+ N I ++A +L + S
Sbjct: 9 SLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 346 HNFLRALTQDLITPLKSLQEL 366
F + ++ L+ L +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQA 88
Score = 33.7 bits (75), Expect = 0.065
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 112 GKF-LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL---A 167
+F +EG +L I++ + K++ + ++ + L N + L+
Sbjct: 1 ARFSIEGKSLKLDAITTEDEKSVFAV--LLEDDSVKEIVLSGNTIGTEAARWLSENIASK 58
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
+L+ + S ++++ + L L L KL T+
Sbjct: 59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102
Score = 33.7 bits (75), Expect = 0.066
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV----SVVAALQGLRSV 242
S +G S L ++ ++ L +++ + L GN + + + + +
Sbjct: 4 SIEGKS-LKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61
Query: 243 TDLDLSHN 250
+ S
Sbjct: 62 EIAEFSDI 69
Score = 33.3 bits (74), Expect = 0.084
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 239 LRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSL 294
+ L L +N + L ++ L L + N+FS +D++ +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED----DVVDEIREV 327
Query: 295 --SCHHNQIDVLED 306
+ ++D L+D
Sbjct: 328 FSTRGRGELDELDD 341
Score = 33.3 bits (74), Expect = 0.097
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA----PNLDRLDL 175
L+ ++S+ + D + LQ L L N + + L + P+L L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD 210
+ N+ E+ + + F +L L
Sbjct: 310 NGNRF-SEEDDVVDEIREV-FSTRGRGELDELDDM 342
Score = 32.9 bits (73), Expect = 0.11
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP-----LVTLRVLRLQGNRLT 229
++ S L L L YN++ + L + L L L GNR +
Sbjct: 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
Score = 31.4 bits (69), Expect = 0.37
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 6/97 (6%)
Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP----RLSSLKVLSIA 273
L++ + SV A L SV ++ LS N + G + L++ +
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFS 67
Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
V+ L L ++ +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.9 bits (92), Expect = 3e-04
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
LDL ++ +EN L + +D S N++ L D L L+ L + NR
Sbjct: 18 VRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 74
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
+ Q L +T+L L++N L + L SL L I N ++ + L
Sbjct: 75 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134
Query: 288 LDKLTSL 294
+ K+ +
Sbjct: 135 IYKVPQV 141
Score = 39.5 bits (91), Expect = 4e-04
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 308 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367
+ LDL +I + A L +D S N +R L D L+ L+ L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 69
Query: 368 LDDNDISMEPECIYVGFNTM 387
+++N I E + +
Sbjct: 70 VNNNRICRIGEGLDQALPDL 89
Score = 36.1 bits (82), Expect = 0.005
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
+ L +I V+E + L +D + N I + G L L TL +++N +
Sbjct: 19 RDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRI 75
Query: 350 RALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRH 399
+ + L L L EL L +N + + + L
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125
Score = 34.5 bits (78), Expect = 0.019
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
A + LDL + + ++L L + DN+I
Sbjct: 12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59
Score = 32.6 bits (73), Expect = 0.067
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
+ L L + V+ L D +D S N++ KL+ L L L ++ N++
Sbjct: 20 DRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRI 75
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLG--PSTV 261
+ + L L L L N L + + L L+S+T L + N + +
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135
Query: 262 PRLSSLKVL 270
++ ++VL
Sbjct: 136 YKVPQVRVL 144
Score = 31.8 bits (71), Expect = 0.15
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 3/132 (2%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
+ LDL K+ + ++ A L + N + + LR + L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLL 69
Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
+++N + +++ ++ LA L LT L N + +
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129
Query: 307 HSFRALSTLSHL 318
+ + + +
Sbjct: 130 YRLYVIYKVPQV 141
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 40.1 bits (92), Expect = 6e-04
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSHNLLAGP 255
LDL+ L D L++ V+ + R + +A V +DLS++++
Sbjct: 5 LDLTGK---NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
+ + S L+ LS+ + S LA L L+
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106
Score = 35.1 bits (79), Expect = 0.021
Identities = 38/234 (16%), Positives = 67/234 (28%), Gaps = 12/234 (5%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL-YKLENTSFKGLSSLNFLDL 199
LS + A P + + +P + +DLS++ + + S L L L
Sbjct: 21 LSQGVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78
Query: 200 SYNKLMTLSQDCLAPLVTLRVL--------RLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
+L + LA L L + +S + L L D +
Sbjct: 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 138
Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
+ + + + Q S + + + + F
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198
Query: 312 LSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
L+ L HL L+ + L + L TL + Q L L LQ
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
Score = 31.2 bits (69), Expect = 0.39
Identities = 36/216 (16%), Positives = 75/216 (34%), Gaps = 11/216 (5%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQ 224
L+ + + + + F + +DLS + + + L+ L+ L L+
Sbjct: 21 LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG-PSTVPRLSSLKVLSIAHNQFSSVRRG 283
G RL+ +V L ++ L+LS + + S L L+++ + +
Sbjct: 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139
Query: 284 ALAGLDKLTS------LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS-LAHL 336
+A + N R L HLDL+ + ++ L
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199
Query: 337 SNLTTLDLSH-NFLRALTQDLITPLKSLQELRLDDN 371
+ L L LS + T + + +L+ L++
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 39.2 bits (90), Expect = 7e-04
Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 20/222 (9%)
Query: 150 LPNNLLSV-VPTSALAPLA--PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
L + ++V P + + +L + + L+S++ + + + + +
Sbjct: 3 LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS 60
Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS 266
+ + L + L L GN+LT A +L + S
Sbjct: 61 V--QGIQYLPNVTKLFLNGNKLTDIKPLA----------NLKNLGWLFLDENKVKDLSSL 108
Query: 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
+ + + GL L L + + + D + + T + +
Sbjct: 109 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168
Query: 327 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
LA L+ L L LS N + L + LK+L L L
Sbjct: 169 -SDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 19/194 (9%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
++ V + L ++D++ +++ + ++ + L ++ L L+ NKL
Sbjct: 34 KSVTDAVTQNEL----NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT--DIKP 85
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
LA L L L L N++ L+ + L
Sbjct: 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE-------- 137
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
+ ++ + + + L+ L +L L+ N I +
Sbjct: 138 -SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-- 194
Query: 332 SLAHLSNLTTLDLS 345
+LA L NL L+L
Sbjct: 195 ALAGLKNLDVLELF 208
Score = 32.3 bits (72), Expect = 0.15
Identities = 8/65 (12%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
A + +L + + L+++ + +++ ++++ I L ++ +L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 371 NDISM 375
N ++
Sbjct: 78 NKLTD 82
Score = 31.9 bits (71), Expect = 0.16
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
GL+ L L LS N + L LA L L VL L
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS 209
Score = 28.8 bits (63), Expect = 2.0
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 254 GPLGPSTV------------PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
GPLG T+ + ++ + L+ + + +++ I
Sbjct: 1 GPLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 58
Query: 302 DVLEDHSFRALSTLSHLDLAHNRI 325
+ + L ++ L L N++
Sbjct: 59 KSV--QGIQYLPNVTKLFLNGNKL 80
Score = 28.1 bits (61), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 675
L+ L+ L ++ N S +R ALAGL L L
Sbjct: 177 LTKLQNLYLSKNHISDLR--ALAGLKNLDVLE 206
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 33.1 bits (74), Expect = 0.061
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
L + + + S L ++ L I ++ G + +L+NLT ++ S
Sbjct: 15 TALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70
Query: 346 HNF 348
+N
Sbjct: 71 NNQ 73
Score = 32.3 bits (72), Expect = 0.12
Identities = 28/191 (14%), Positives = 67/191 (35%), Gaps = 19/191 (9%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
N+ V + L + L + ++ + L++L ++ S N+L ++
Sbjct: 28 TNVTDTVSQTDL----DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLK 81
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
+ ++ + + + + L++L L
Sbjct: 82 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-------IDPLKNLTNLNRLE 134
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
++ N S + + + + + V + L+TL LD++ N++ +S
Sbjct: 135 LSSNTISDISALS----GLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-- 188
Query: 332 SLAHLSNLTTL 342
LA L+NL +L
Sbjct: 189 VLAKLTNLESL 199
Score = 31.9 bits (71), Expect = 0.16
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
AL+ L + S L +TTL ++++ + L +L ++ +
Sbjct: 16 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 71
Query: 371 N 371
N
Sbjct: 72 N 72
Score = 31.6 bits (70), Expect = 0.20
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
LA+L+ L LD+S N + + ++ L +L+ L
Sbjct: 167 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199
Score = 28.5 bits (62), Expect = 2.2
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
L+ + + + LD++T+L I ++ L+ L+ ++ +
Sbjct: 15 TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFS 70
Query: 322 HN 323
+N
Sbjct: 71 NN 72
Score = 27.7 bits (60), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSL 674
L++L+ L I+ N+ S + LA L L SL
Sbjct: 171 LTTLERLDISSNKVSDI--SVLAKLTNLESL 199
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 33.1 bits (74), Expect = 0.062
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHN 347
K T++ + I + E+ + ++L H I + A+L+ L L LS N
Sbjct: 3 KATTIK---DAIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTN 58
Query: 348 FLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRH 399
+ ++ ++ +++L+ L L N I V +L + Y+ +
Sbjct: 59 NIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 32.5 bits (72), Expect = 0.10
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
T+L L+ N L RL L L + NQ + + A G + L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
+I + + F L L L+L N+I V S HL++LT+L+ + L
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWF 147
Query: 360 LKSLQELRLDDNDIS 374
+ L++ L+
Sbjct: 148 AEWLRKKSLNGGAAR 162
Score = 27.5 bits (59), Expect = 5.0
Identities = 29/199 (14%), Positives = 56/199 (28%), Gaps = 32/199 (16%)
Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
L +P + + L L+ N+L ++ + G +T +
Sbjct: 17 GRGLKEIP----RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
+ G + L LK L+
Sbjct: 73 AFEGASHIQELQLGENKIKE------------------------ISNKMFLGLHQLKTLN 108
Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
+ NQ S V G+ L+ LTSL+ N + ++ L L
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAA---RCG 164
Query: 332 SLAHLSNLTTLDLSHNFLR 350
+ + + ++ DL H+ +
Sbjct: 165 APSKVRDVQIKDLPHSEFK 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,366,692
Number of extensions: 104376
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 180
Length of query: 694
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 602
Effective length of database: 1,144,436
Effective search space: 688950472
Effective search space used: 688950472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)