BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8880
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
++ L++L L + NQ S+ G L L L NQ+ L D F L+ L++L+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
AHN++ ++ L+NLT LDLS+N L++L + + L L++LRL N + V PD
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDG 199
Query: 127 IGDNVT 132
+ D +T
Sbjct: 200 VFDRLT 205
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+L++LK L + NQ S+ G L LT L+ HNQ+ L F L+ L+ LDL++
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N++ ++ L+ L L L N L+++ + L SLQ + L DN P +
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
++ L +++ L++ N+ + AL L LT L NQ+ L + F L+ L L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N++ ++ L+NLT L+L+HN L++L + + L +L EL L N + + P+
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEG 175
Query: 127 IGDNVT 132
+ D +T
Sbjct: 176 VFDKLT 181
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
++ L++L L + NQ S+ G L L L NQ+ L D F L+ L++L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
HN++ ++ L+NLT LDL +N L++L + + L L++L L+DN + V PD
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV-PDG 199
Query: 127 IGDNVT 132
+ D +T
Sbjct: 200 VFDRLT 205
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+L++LK L + NQ S+ G L LT L +HNQ+ L F L+ L+ LDL +
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
N++ ++ L+ L L L+ N L+++ + L SL + L +N D++
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
++ L +++ L++ N+ + AL L LT L NQ+ L + F L+ L L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N++ ++ L+NLT L L HN L++L + + L +L L LD+N + + P+
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL-PEG 175
Query: 127 IGDNVT 132
+ D +T
Sbjct: 176 VFDKLT 181
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R L++L+ L + N ++ L LT L H N+I + +H+FR L +L L L
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLL 183
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N + V + L L TL L N L L +++ PL+SLQ LRL+DN
Sbjct: 184 HQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 21 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASL 79
N+ S V + LT L H N + ++ +F L+ L LDL+ N ++ V +
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 80 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L +L TL L L+ L L L +LQ L L DN++ + + D +T L L
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 140 G 140
G
Sbjct: 161 G 161
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 10 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L+ L ++ N Q V GL L +L + L FR L+ L +L L
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N + A+ + L NLT L L N + ++ + L SL L L N ++ V P
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 129 DNVTITTLTL 138
D + TL L
Sbjct: 198 DLGRLMTLYL 207
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R L++L+ L + N ++ L LT L H N+I + + +FR L +L L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
NR+ V + L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 21 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASL 79
N+ S V + LT L H N + ++ +F L+ L LDL+ N ++ +V A+
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 80 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L L TL L L+ L L L +LQ L L DN + + D D +T L L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 140 G 140
G
Sbjct: 162 G 162
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 10 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L+ L ++ N Q SV GL +L +L + L FR L+ L +L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N + A+ + L NLT L L N + ++ + L SL L L N ++ V P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 129 DNVTITTLTL 138
D + TL L
Sbjct: 199 DLGRLMTLYL 208
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R L++L+ L + N ++ L LT L H N+I + + +FR L +L L L
Sbjct: 124 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
NR+ V + L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 21 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASL 79
N+ S V + LT L H N + ++ +F L+ L LDL+ N ++ +V A+
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 80 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L L TL L L+ L L L +LQ L L DN + + D D +T L L
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 140 G 140
G
Sbjct: 161 G 161
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 10 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L+ L ++ N Q SV GL +L +L + L FR L+ L +L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N + A+ + L NLT L L N + ++ + L SL L L N ++ V P
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 129 DNVTITTLTL 138
D + TL L
Sbjct: 198 DLGRLMTLYL 207
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S +K ++ ++ ++ + + L L+ N+I+ ++D++F L+ L L+L+ N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN 130
+ ++ +L L LDLS+N +RAL L +L+EL LD N + V PD I D
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDR 393
Query: 131 VT 132
+T
Sbjct: 394 LT 395
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRALSTLSH 63
T R LSSL +L + +NQF + GA GL L L+ +D VL + F+ L++L
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 64 LDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKS-------LQELRLD 115
L L N I + AS ++ LDL+ N ++++ ++ + + L + L
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 116 DNDISMVTPDVIGD---NVTITTLTLSG 140
D + + + G+ N +ITTL LSG
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 49 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA--LTQDLITPL 106
V+ +++FR LS+L L L +N+ + + + L+NL L L+ L L+ + PL
Sbjct: 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 107 KSLQELRLDDNDISMVTP 124
SL+ L L DN+I + P
Sbjct: 129 TSLEMLVLRDNNIKKIQP 146
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
L L +L L N++D++ SF+ L++L L L H ++ + + L +L L+L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 91 SHNFLRALTQDLITPLKSLQELRLDDN 117
SHN L +L DL TPL L+ + L+ N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L L+ L ++ N+ +R G+ GL L L H Q+ +E ++F L +L L+L+HN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 70 RIVAVSGASLAHLSNLTTLDLSHN 93
++++ L L + L+HN
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 47/157 (29%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH- 68
L SL L + N+ ++V A L KL L +N I+ + ++F + +L LDL
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-----------------DLITP------ 105
R+ +S A+ L NL L+L L+ + DLI P
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 106 -----------------------LKSLQELRLDDNDI 119
LKSL+EL L N++
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L LKVL++A+N+ + + A GLD L L+ +N + L +F L ++++DL N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 70 RIVAVSGASLAHLSNLTTLDLSHN 93
I + + L L TLDL N
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDN 372
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
SS++ L ++H S+ L L L+ +N+I+ + D +F L L L+L++N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV-----TPD 125
+ + ++ L + +DL N + + L+ LQ L L DN ++ + PD
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 126 VIGDNVTITTL 136
+ + TL
Sbjct: 386 IFLSGNKLVTL 396
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRALSTLSHL 64
R L +L++L + ++ + A GL L L + + VL+D FR L L+ L
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
Query: 65 DLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
DL+ N+I ++ S L++L ++D S N + + + + PL+
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 30 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 89
GL L L +HN ++ L F L+ L L L NR+ +S L +NL LD
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532
Query: 90 LSHNFLRALTQDLITPLKSL 109
+S N L A D+ L L
Sbjct: 533 ISRNQLLAPNPDVFVSLSVL 552
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
A S++ HLDL+H + +++ L +L L+L++N + + + L +LQ L L
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 117 N 117
N
Sbjct: 324 N 324
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
D N ++ +S+ HL DLSH F+ +L + LK L+ L L N I+ +
Sbjct: 254 DPDQNTFAGLARSSVRHL------DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307
Query: 125 DVIG--DNVTITTLT--LSGE 141
+ DN+ + L+ L GE
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGE 328
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTI 133
LS+L L L+HN+L +L + + L +L+ L L+ N +++++ + + N+ I
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
L L +L L N++D++ SF+ L++L L L H ++ + + L +L L+L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 91 SHNFLRALTQDLITPLKSLQELRLDDN 117
SHN L +L DL TPL L+ + L+ N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L L+ L ++ N+ +R G+ GL L L H Q+ +E ++F L +L L+L+HN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 70 RIVAVSGASLAHLSNLTTLDLSHN 93
++++ L L + L+HN
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 47/165 (28%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH- 68
L SL L + N+ ++V A L KL L +N I+ + ++F + +L LDL
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-----------------DLITP------ 105
R+ +S A+ L NL L+L L+ + DLI P
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 106 -----------------------LKSLQELRLDDNDISMVTPDVI 127
LKSL+EL L N++ + D+
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLF 246
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%)
Query: 33 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92
GL KLT L+ +NQ+ L F L+ L L LA+N++ ++ HL+ L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 93 NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
N L++L + L L+ELRL+ N + + + TL+LS
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+ L L +A+NQ +S+ G L +L L NQ+ L F L+ L L L N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
++ ++ + L+NL TL LS N L+++ L LQ + L N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T R L+ L L++ +NQ ++ G L +L +L +NQ+ L F L+ L L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L N++ ++ L+ L L L+ N L+++ L +LQ L L N + V
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 126 VIGDNVTITTLTLSG 140
+ T+TL G
Sbjct: 174 AFDRLGKLQTITLFG 188
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ LK L + NQ S+ GA L L +LS NQ+ + +F L L + L
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 69 NRI 71
N+
Sbjct: 189 NQF 191
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
+L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%)
Query: 33 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92
GL KLT L+ +NQ+ L F L+ L L LA+N++ ++ HL+ L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 93 NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
N L++L + L L+ELRL+ N + + + TL+LS
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+ L L +A+NQ +S+ G L +L L NQ+ L F L+ L L L N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
++ ++ + L+NL TL LS N L+++ L LQ + L N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T R L+ L L++ +NQ ++ G L +L +L +NQ+ L F L+ L L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L N++ ++ L+ L L L+ N L+++ L +LQ L L N + V
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 126 VIGDNVTITTLTLSG 140
+ T+TL G
Sbjct: 174 AFDRLGKLQTITLFG 188
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ LK L + NQ S+ GA L L +LS NQ+ + +F L L + L
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 69 NRI 71
N+
Sbjct: 189 NQF 191
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
+L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 19/144 (13%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+S++ LS+A+NQ + +GL LT L +N + + + SF L +L +L L +
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT----P---------LKSLQELRLD 115
N I +S S LSNL L L RA T+ ++ P LK L+ L +D
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLK----RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMD 337
Query: 116 DNDISMVTPDVIGDNVTITTLTLS 139
DN+I + V++ L+LS
Sbjct: 338 DNNIPSTKSNTFTGLVSLKYLSLS 361
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFRALS--TLSHLDLA 67
SSL+ L ++ N G + KL +L ++ Q++ L + LS ++ +L LA
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 68 HNRIVAVSGASLAHL--SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
+N+++A S ++ + L +NLT LDLS+N L + + L SL+ L L+ N+I ++P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
R S L +L N S + L L L+ HN++ + D +F + L+ LDL
Sbjct: 47 RYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMS 106
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N I + + NL LDLSHN
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S++ VL++ HNQ + +L L N I LE + L L L+L HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+ +S + +NLT LDL N + + + K+L +L L N +S
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 26/130 (20%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH---- 68
LKVL++ HN+ S + LT L N I ++ + F+ L LDL+H
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 69 --------------------NRIVAVSGASLAHLSN--LTTLDLSHNFLRALTQDLITPL 106
N+I+A+ L L N L LDLS N L+ + +
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 107 KSLQELRLDD 116
L L L++
Sbjct: 195 GKLFALLLNN 204
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH---NQIDVLEDHSFRALSTLSHL 64
R L ++ + +++N++ + + A + L L +D+ FR L L+ L
Sbjct: 427 RGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDI-SPSPFRPLRNLTIL 485
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 100
DL++N I ++ L L NL LD HN L L +
Sbjct: 486 DLSNNNIANINEDLLEGLENLEILDFQHNNLARLWK 521
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
SN+T L+L+HN LR L T L L N IS + P++
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 2 SIWCTVRRLSSLKV-----------LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 50
++W T +L +L + L + NQ S+ L KLT LS +N++ L
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 51 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 110
F L++L L L +N++ V + L+ L TL L +N L+ + + L+ L+
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 111 ELRLDDN 117
L+L +N
Sbjct: 209 MLQLQEN 215
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
+L+ LK L + +NQ V GA L+KL L N D
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L L+ L ++ N F +R G+ GL L L ++Q+ ++E ++F L++L L+LAHN
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
L +L DL TPL+ L EL L N
Sbjct: 277 N------------------------LSSLPHDLFTPLRYLVELHLHHNP 301
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH- 68
L+SL L + N + + GA L KL L +N I+ + ++F + +L LDL
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
++ +S + L NL L+L ++ + +TPL L+EL + N + P
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRP 235
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 21 NQFSSV---RRG---ALAGLDKLT-SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
NQFS V RRG G+ T L+ N I +++ +FR L L L L N I
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
+ + L++L TL+L N+L + L L+EL L +N I +
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRALSTLSH 63
T R LSSL +L + +NQF + GA GL L L+ +D VL + F+ L++L
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 64 LDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKS-------LQELRLD 115
L L N I + AS ++ LDL+ N ++++ ++ + + L + L
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 116 DNDISMVTPDVIGD---NVTITTLTLSG 140
D + + + G+ N +ITTL LSG
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 49 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA--LTQDLITPL 106
V+ +++FR LS+L L L +N+ + + + L+NL L L+ L L+ + PL
Sbjct: 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 107 KSLQELRLDDNDISMVTP 124
SL+ L L DN+I + P
Sbjct: 129 TSLEMLVLRDNNIKKIQP 146
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 33 GLDKLTS--------LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84
GL+K+ L +N+I ++D F+ L L L L +N+I +S + A L
Sbjct: 42 GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L L LS N L+ L + + K+LQELR+ +N+I+ V
Sbjct: 102 LERLYLSKNQLKELPEKMP---KTLQELRVHENEITKV 136
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV--LEDHSFRALSTLSHLDLA- 67
+L+ L + N+ + VR+ GL+++ + N + +E+ +F+ + LS++ +A
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180
Query: 68 --------------------HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 107
N+I V ASL L+NL L LS N + A+ +
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 108 SLQELRLDDNDISMVTPDVIGDNVTITTLTL 138
L+EL L++N + V P + D+ I + L
Sbjct: 241 HLRELHLNNNKLVKV-PGGLADHKYIQVVYL 270
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 33 GLDKLTS--------LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84
GL+K+ L +N+I ++D F+ L L L L +N+I +S + A L
Sbjct: 42 GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L L LS N L+ L + + K+LQELR+ +N+I+ V
Sbjct: 102 LERLYLSKNQLKELPEKMP---KTLQELRVHENEITKV 136
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV--LEDHSFRALSTLSHLDLA- 67
+L+ L + N+ + VR+ GL+++ + N + +E+ +F+ + LS++ +A
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180
Query: 68 --------------------HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 107
N+I V ASL L+NL L LS N + A+ +
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 108 SLQELRLDDNDISMVTPDVIGDNVTITTLTL 138
L+EL L++N + V P + D+ I + L
Sbjct: 241 HLRELHLNNNKLVKV-PGGLADHKYIQVVYL 270
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
++L + N+ ++ + A L L + N + +E +F L L L L NR+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
+ LSNLT LD+S N + L + L +L+ L + DND+ ++
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72
L+ L + N S+V GA L L +L N++ ++ F LS L+ LD++ N+IV
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 73 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+ L NL +L++ N L ++ + L SL++L L+ +++ + + +
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH- 68
L+SL+ L++ +S+ AL+ L L L H I+ + D+SF+ L L L+++H
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 69 -----------------------NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 105
+ AV ++ HL L L+LS+N + + ++
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 106 LKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L LQE++L +++V P + L +SG
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L+ L + N+ + G GL LT L N+I +L D+ F+ L L L++ N
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 70 RIV-----AVSG-------------------ASLAHLSNLTTLDLSH 92
+V A SG +L+HL L L L H
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
LDL NRI ++ A +L L+L+ N + A+ L +L+ L L N + ++
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 124 PDVIGDNVTITTLTLS 139
V +T L +S
Sbjct: 97 LGVFTGLSNLTKLDIS 112
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72
L+ + + Q + V A GL+ L L+ NQ+ LE+ F ++ L L L N +
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Query: 73 A 73
Sbjct: 334 C 334
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72
L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L +L L+ NR+
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 73 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT 132
V L+ + +L ++S+N L L P+ +++EL N I++V V NV
Sbjct: 185 HV---DLSLIPSLFHANVSYNLLSTLA----IPI-AVEELDASHNSINVVRGPV---NVE 233
Query: 133 ITTLTLS 139
+T L L
Sbjct: 234 LTILKLQ 240
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 22 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 81
Q + A A + L N I L H F+ + L+ L L N + ++ +
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN-----DISMVTPDVIGDNVTITTL 136
LTTL +S+N L + D SLQ L+L N D+S++ P + NV+ L
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-PSLFHANVSYNLL 204
Query: 137 T 137
+
Sbjct: 205 S 205
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
L +L + HN + L L + +N+++ + H F + L L +++NR+
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 72 VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
VA++ + L LDLSHN L + ++ L+ L LD N I
Sbjct: 291 VALNLYGQP-IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI 336
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE---DHSFRALSTLSHLDL 66
+ +LKVL ++HN V R D+L +L HN I L+ H+ + L TLSH D
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNL-TLSHNDW 357
Query: 67 AHNRIVAV 74
N + A+
Sbjct: 358 DCNSLRAL 365
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
SFR + L+ DL +I + + A+ + L + N +R L + + L L
Sbjct: 73 SFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLSG 140
L+ ND+S + + + +TTL++S
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSN 156
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
++K L +++N+ + + L L +L N I+ +E+ SF +L +L HLDL++N +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 72 VAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDND 118
+S + LS+LT L+L N + L + L + L LQ LR+ + D
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 39 SLSCHHNQIDVLEDHSFRALST-----LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
SLSC N I S ++ + + LDL++NRI +S + L NL L L+ N
Sbjct: 27 SLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ + +D + L SL+ L L N +S ++ ++T L L G
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 94
+ + SL +N+I + + + L L L N I + S + L +L LDLS+N+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 95 LRALTQDLITPLKSLQELRLDDN 117
L L+ PL SL L L N
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGN 134
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 10 LSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
L+ L++L + + + F+ ++R AGL L L + + E S +++ +SHL
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+SL L + N+ S+ G L LT L+ NQ+ L + F L+ L L L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N++ ++ L+ L L L N L+++ + L SLQ + L DN P +
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 167
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
++K L +++N+ + + L L +L N I+ +E+ SF +L +L HLDL++N +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 72 VAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDND 118
+S + LS+LT L+L N + L + L + L LQ LR+ + D
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 134
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 39 SLSCHHNQIDVLEDHSFRALST-----LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
SLSC N I S ++ + + LDL++NRI +S + L NL L L+ N
Sbjct: 1 SLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 60
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ + +D + L SL+ L L N +S ++ ++T L L G
Sbjct: 61 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 107
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 32 AGL-DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
+GL + + SL +N+I + + + L L L N I + S + L +L LDL
Sbjct: 22 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 81
Query: 91 SHNFLRALTQDLITPLKSLQELRLDDN 117
S+N+L L+ PL SL L L N
Sbjct: 82 SYNYLSNLSSSWFKPLSSLTFLNLLGN 108
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 10 LSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
L+ L++L + + + F+ ++R AGL L L + + E S +++ +SHL
Sbjct: 122 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72
L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L +L L+ NR+
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 73 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT 132
V L+ + +L ++S+N L L P+ +++EL N I++V V NV
Sbjct: 179 HV---DLSLIPSLFHANVSYNLLSTLA----IPI-AVEELDASHNSINVVRGPV---NVE 227
Query: 133 ITTLTLS 139
+T L L
Sbjct: 228 LTILKLQ 234
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 22 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 81
Q + A A + L N I L H F+ + L+ L L N + ++ +
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN-----DISMVTPDVIGDNVTITTL 136
LTTL +S+N L + D SLQ L+L N D+S++ P + NV+ L
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-PSLFHANVSYNLL 198
Query: 137 T 137
+
Sbjct: 199 S 199
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
L +L + HN + L L + +N+++ + H F + L L +++NR+
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 72 VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
VA++ + L LDLSHN L + ++ L+ L LD N I
Sbjct: 285 VALNLYGQP-IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI 330
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE---DHSFRALSTLSHL 64
+ + +LKVL ++HN V R D+L +L HN I L+ H+ + L TLSH
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNL-TLSHN 349
Query: 65 DLAHNRIVAV 74
D N + A+
Sbjct: 350 DWDCNSLRAL 359
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
SFR + L+ DL +I + + A+ + L + N +R L + + L L
Sbjct: 67 SFRQVELLNLNDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLSG 140
L+ ND+S + + + +TTL++S
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSN 150
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRALS--------- 59
SSL L I N+ V +G +GL + + N ++ E +F L
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 60 -----------TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
TL+ L L HN+I A+ L S L L L HN +R + ++ L +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242
Query: 109 LQELRLDDNDISMVT---PDV 126
L+EL LD+N +S V PD+
Sbjct: 243 LRELHLDNNKLSRVPAGLPDL 263
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 47
R S L L + HNQ + G+L+ L L L +N++
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 56 RALSTLSHL---DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 112
+ LS HL DL++NRI +S S ++++ L TL LS+N LR + LKSL+ L
Sbjct: 48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 113 RLDDNDISMVTPDVIGD 129
L NDIS+V D
Sbjct: 108 SLHGNDISVVPEGAFND 124
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++ L L +++N+ + GL L LS H N I V+ + +F LS LSHL + N
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Query: 70 RIVA 73
+
Sbjct: 137 PLYC 140
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 21 NQFSSV---RRGALAGLDKLTS----LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
NQFS V R+ D +++ L+ H NQI +++ +SF+ L L L L+ N I
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
+ + L+NL TL+L N L + L L+EL L +N I +
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS+L+ L++A + L L KL L N + + SF+ L L L + +
Sbjct: 184 LSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+I + + +L +L ++L+HN L L DL TPL L+ + L N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N++ + L L NL TL L N L + +
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R+L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N ++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N++ + L L NL TL L N L + +
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N ++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 52
+ + C R+L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 53 HSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 110
L L LDL+HN++ ++ G +L L T LD+S N L +L + L LQ
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 111 ELRLDDNDISMVTPDVIGDNVTITTLTLS 139
EL L N++ + P ++ + L+L+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N++ + L L NL TL L N L + +
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N ++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 52
+ + C R+L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 53 HSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 110
L L LDL+HN++ ++ G +L L T LD+S N L +L + L LQ
Sbjct: 73 DG--TLPVLGTLDLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 111 ELRLDDNDISMVTPDVIGDNVTITTLTLS 139
EL L N++ + P ++ + L+L+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N++ + L L NL TL L N L + +
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N ++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R+L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + + L L NL TL L N L + +
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N+++
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLT 162
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 14 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 74 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 127
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 128 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + + L L NL TL L N L + +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N+++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + + L L NL TL L N L + +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N+++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + + L L NL TL L N L + +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N+++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + + L L NL TL L N L + +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +N+++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + + L L NL TL L N L + +
Sbjct: 157 NNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L L +L HNQ+ L + L L+ LD++ NR+ ++ +L L L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 94 FLRALTQDLITPLKSLQELRLDDNDIS 120
L+ L L+TP L++L L +ND++
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLT 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MSIWCTVRRLSSLK--------VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE- 51
+ + C R L++L +L ++ N + L +LT L+ ++ L+
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 52 DHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
D + L TL DL+HN++ ++ G +L L T LD+S N L +L + L L
Sbjct: 73 DGTLPVLGTL---DLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGEL 126
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLS 139
QEL L N++ + P ++ + L+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
+++K L ++ N+ + + G L L L ++I+ +E +F +L +L HLDL+ N
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 111
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-LKSLQELRLDD 116
+ ++S + LS+L L+L N + L + P L +LQ LR+ +
Sbjct: 112 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 23 FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82
F+S+ G A + SL N+I + RA + L L L +RI + G + L
Sbjct: 43 FTSIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT 132
+L LDLS N L +L+ PL SL+ L L N + + N+T
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 149
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 39 SLSCHHNQIDVLEDHSFRALST-----LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
SLSC + + SF ++ + + LDL+ N+I + L +NL L L +
Sbjct: 27 SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 86
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ + D L SL+ L L DN +S ++ G ++ L L G
Sbjct: 87 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 133
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
+++K L ++ N+ + + G L L L ++I+ +E +F +L +L HLDL+ N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-LKSLQELRLDD 116
+ ++S + LS+L L+L N + L + P L +LQ LR+ +
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 23 FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82
F+S+ G A + SL N+I + RA + L L L +RI + G + L
Sbjct: 17 FTSIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+L LDLS N L +L+ PL SL+ L L N
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 39 SLSCHHNQIDVLEDHSFRALST-----LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
SLSC + + SF ++ + + LDL+ N+I + L +NL L L +
Sbjct: 1 SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ + D L SL+ L L DN +S ++ G ++ L L G
Sbjct: 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL L L + NQ + + A G + L N+I + + F L L L+L
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N+I V S HL++LT+L+L+ N
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASN 136
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%)
Query: 29 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88
G L L L NQ+ +E ++F S + L L N+I +S L L TL
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 89 DLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+L N + + L SL L L N +
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
R S L L + N S + L L L+ HN++ L D +F + L+ L L
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N I + NL TLDLSHN
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHN 131
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
++L LKVL++ HN+ S + A LT L N I ++++ F L LDL+
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRAL-TQDL-ITPLKSLQELRLDDNDISMVTP 124
HN + + + L NL L LS+N ++AL +++L I SL++L L N I +P
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 50 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF--LRALTQDLITPL- 106
++D SF+ L L HL++ N I + L NL L LS++F LR LT + L
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 107 -KSLQELRLDDNDISMVTPDVI 127
L L L N IS + D
Sbjct: 380 HSPLHILNLTKNKISKIESDAF 401
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
+T L+ HNQ+ L +F S L+ LD+ N I + L L L+L HN L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L+ +L EL L N I + + + TL LS
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFR-ALSTLSHLDLA 67
SSLK L ++ NQ G + +L L ++ Q+ + E A +++ +L L+
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 68 HNRIVAVSGASLAHL--SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
++++ S + L +NLT LDLS+N L + D L L+ L+ N+I
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSHL 64
L +LK LS++ N F+S+R L H N+I +E +F L L L
Sbjct: 352 LINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 65 DLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
DL N I ++G L N+ + LS+N LT++ + SLQ L L
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRAL--STL 61
+ + L L+ L++ N ++ GL K SLS + L + +F +L S L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL-RALTQDLITPLKSLQELRLDDNDIS 120
L+L N+I + + + L +L LDL N + + LT L+++ E+ L N
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 121 MVT 123
+T
Sbjct: 444 QLT 446
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE--DHSFRALSTLSHLD 65
R L ++ + +++N++ + R + A + L L + ++ F+ L L+ LD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD--------LITPLKSLQELRLDDN 117
L++N I ++ L L L LDL HN L L + + L L L L+ N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 118 DISMVTPDVIGD 129
+ +V D
Sbjct: 547 GFDEIPVEVFKD 558
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
R S L L + N S + L L L+ HN++ L D +F + L+ L L
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 111
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N I + NL TLDLSHN
Sbjct: 112 NSIQKIKNNPFVKQKNLITLDLSHN 136
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
++L LKVL++ HN+ S + A LT L N I ++++ F L LDL+
Sbjct: 75 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 134
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRAL-TQDL-ITPLKSLQELRLDDNDISMVTP 124
HN + + + L NL L LS+N ++AL +++L I SL++L L N I +P
Sbjct: 135 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 50 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF--LRALTQDLITPL- 106
++D SF+ L L HL++ N I + L NL L LS++F LR LT + L
Sbjct: 325 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 384
Query: 107 -KSLQELRLDDNDISMVTPDVI 127
L L L N IS + D
Sbjct: 385 HSPLHILNLTKNKISKIESDAF 406
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
+T L+ HNQ+ L +F S L+ LD+ N I + L L L+L HN L
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L+ +L EL L N I + + + TL LS
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 134
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFR-ALSTLSHLDLA 67
SSLK L ++ NQ G + +L L ++ Q+ + E A +++ +L L+
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 235
Query: 68 HNRIVAVSGASLAHL--SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
++++ S + L +NLT LDLS+N L + D L L+ L+ N+I
Sbjct: 236 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSHL 64
L +LK LS++ N F+S+R L H N+I +E +F L L L
Sbjct: 357 LINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 415
Query: 65 DLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
DL N I ++G L N+ + LS+N LT++ + SLQ L L
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 466
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRAL--STL 61
+ + L L+ L++ N ++ GL K SLS + L + +F +L S L
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 388
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL-RALTQDLITPLKSLQELRLDDNDIS 120
L+L N+I + + + L +L LDL N + + LT L+++ E+ L N
Sbjct: 389 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 448
Query: 121 MVT 123
+T
Sbjct: 449 QLT 451
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
R S L L + N S + L L L+ HN++ L D +F + L+ L L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 116
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N I + NL TLDLSHN
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLSHN 141
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
++L LKVL++ HN+ S + A LT L N I ++++ F L LDL+
Sbjct: 80 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 139
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRAL-TQDL-ITPLKSLQELRLDDNDISMVTP 124
HN + + + L NL L LS+N ++AL +++L I SL++L L N I +P
Sbjct: 140 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 50 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF--LRALTQDLITPL- 106
++D SF+ L L HL++ N I + L NL L LS++F LR LT + L
Sbjct: 330 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 389
Query: 107 -KSLQELRLDDNDISMVTPDVI 127
L L L N IS + D
Sbjct: 390 HSPLHILNLTKNKISKIESDAF 411
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
+T L+ HNQ+ L +F S L+ LD+ N I + L L L+L HN L
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L+ +L EL L N I + + + TL LS
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 139
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFR-ALSTLSHLDLA 67
SSLK L ++ NQ G + +L L ++ Q+ + E A +++ +L L+
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 240
Query: 68 HNRIVAVSGASLAHL--SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
++++ S + L +NLT LDLS+N L + D L L+ L+ N+I
Sbjct: 241 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSHL 64
L +LK LS++ N F+S+R L H N+I +E +F L L L
Sbjct: 362 LINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 420
Query: 65 DLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
DL N I ++G L N+ + LS+N LT++ + SLQ L L
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 471
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRAL--STL 61
+ + L L+ L++ N ++ GL K SLS + L + +F +L S L
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 393
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL-RALTQDLITPLKSLQELRLDDNDIS 120
L+L N+I + + + L +L LDL N + + LT L+++ E+ L N
Sbjct: 394 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 453
Query: 121 MVT 123
+T
Sbjct: 454 QLT 456
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 15 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 74
+L+I+ N S + + L KL L HN+I L+ F+ L +LDL+HN++V +
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 75 SGASLAHLSNLTTLDLSHNFLRAL 98
S NL LDLS N AL
Sbjct: 85 SCHPTV---NLKHLDLSFNAFDAL 105
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQELRL 114
+S HLD ++N + + HL+ L TL L N L+ L++ ++ T +KSLQ+L +
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 115 DDNDISM 121
N +S
Sbjct: 382 SQNSVSY 388
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 95
K T L+ N I L +LS L L ++HNRI + + L LDLSHN L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 96 RALT 99
++
Sbjct: 82 VKIS 85
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
V +L +L+ L++A NQ SV G L L + H N D
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
K LS++ N S +R ++ L +L L HN+I L+ H F L +LD++HNR+
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 74 VSGASLAHLSNLTTLDLSHN 93
+S +A L + LDLS N
Sbjct: 115 ISCCPMASLRH---LDLSFN 131
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 39 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 98
+LS N I L LS L L L+HNRI ++ +L LD+SHN L+ +
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 99 TQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ P+ SL+ L L ND ++ V + +T LT G
Sbjct: 116 S---CCPMASLRHLDLSFNDFDVLP--VCKEFGNLTKLTFLG 152
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 48 DVLEDHSFRALST-LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 106
++L FR L + LDL +NRI+++ + HL L L+++ N L+++ + L
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 107 KSLQELRLDDNDISMVTPDV 126
SLQ + L DN P +
Sbjct: 497 TSLQYIWLHDNPWDCTCPGI 516
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS L+VL ++HN+ S+ L L HN+ L++ S +++L HLDL+ N
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR---LQNISCCPMASLRHLDLSFN 131
Query: 70 RI-VAVSGASLAHLSNLTTLDLSHNFLRAL 98
V +L+ LT L LS R L
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
MSI V L +L+ L++A NQ SV G L L + H N D + +
Sbjct: 463 MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRY 518
Query: 61 LSHLDLAHNRIVAVSGASLA 80
LS H+ +V S S+A
Sbjct: 519 LSEWINKHSGVVRNSAGSVA 538
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 174 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 229
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 230 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 263 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 317
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 318 NNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 372
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 373 LTRITQLGLND 383
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 63 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 106
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 175 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 230
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 231 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 318
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 373
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 374 LTRITQLGLND 384
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 64 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 107
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 170 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 225
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 226 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 259 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 313
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 314 NNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 368
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 369 LTRITQLGLND 379
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 59 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 102
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 170 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 225
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 226 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 259 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 313
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 314 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 368
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 369 LTRITQLGLND 379
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 59 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 102
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 171 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 226
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 227 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 260 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 314
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 315 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 369
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 370 LTRITQLGLND 380
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 59 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 102
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 171 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 226
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 227 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 260 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 314
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 315 NNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 369
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 370 LTRITQLGLND 380
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 59 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 102
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L
Sbjct: 171 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNG 226
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
N++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P
Sbjct: 227 NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 34/131 (25%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
L+ L L + NQ S++ LAGL LT+L + NQ LED S L L++L L
Sbjct: 260 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ---LEDISPISNLKNLTYLTLYF 314
Query: 69 NRIVAVSG--------------------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
N I +S +SLA+L+N+ L HN + L TPL +
Sbjct: 315 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-----TPLAN 369
Query: 109 L---QELRLDD 116
L +L L+D
Sbjct: 370 LTRITQLGLND 380
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR---LDDNDISMVTP 124
+ +L+NLT ++ S+N L ITPLK+L +L +++N I+ +TP
Sbjct: 59 VEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMNNNQIADITP 102
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 16 LSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 74
L + +N+F+ + G L +L ++ +N+I +E+ +F S ++ + L NR+ V
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 75 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTIT 134
L +L TL L N + + D L S++ L L DN I+ V P +++
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156
Query: 135 TLTL 138
TL L
Sbjct: 157 TLNL 160
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S + + + N+ +V+ GL+ L +L N+I + + SF LS++ L L N+
Sbjct: 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140
Query: 71 IVAVSGASLAHLSNLTTLDLSHN 93
I V+ + L +L+TL+L N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ L SLK L + N+ + V + GL + LS + NQI + +F L +LS L+L
Sbjct: 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
Query: 67 AHN 69
N
Sbjct: 161 LAN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 21 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASL 79
N S G+ +GL L +L ++ LE L TL L++AHN I + A
Sbjct: 85 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 144
Query: 80 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN----VTITT 135
++L+NL +DLS+N+++ +T + + L+ ++ L D+S+ D I D + +
Sbjct: 145 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL-DMSLNPIDFIQDQAFQGIKLHE 203
Query: 136 LTLSG 140
LTL G
Sbjct: 204 LTLRG 208
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
++L L ++ Q + G L +L L+ HN + L+ + L +LS LD + NR
Sbjct: 468 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 527
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALT--QDLITPLKSLQELRLDDNDISMVTP 124
I G +L +L++N + + Q + +K ++ ++ ++ TP
Sbjct: 528 IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATP 583
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+SL L +A N F + A LT L Q++ + F L L L+++H
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
N ++ + + L +L+TLD S N + L KSL L +N ++ +
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 555
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + +L+ +SF S L LDL+ I + + L +L+ L L+ N +++ + +
Sbjct: 37 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 96
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SL+ L + ++ + IG +T+ L ++
Sbjct: 97 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L+ L H+ V A L+KL L + + D F L++L+ L +A
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 452
Query: 69 NRIVAVSGAS-LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
N + ++ A+ +NLT LDLS L ++ + L LQ L + N++
Sbjct: 453 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 21 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASL 79
N S G+ +GL L +L ++ LE L TL L++AHN I + A
Sbjct: 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 80 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN----VTITT 135
++L+NL +DLS+N+++ +T + + L+ ++ L D+S+ D I D + +
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL-DMSLNPIDFIQDQAFQGIKLHE 208
Query: 136 LTLSG 140
LTL G
Sbjct: 209 LTLRG 213
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
++L L ++ Q + G L +L L+ HN + L+ + L +LS LD + NR
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALT--QDLITPLKSLQELRLDDNDISMVTP 124
I G +L +L++N + + Q + +K ++ ++ ++ TP
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATP 588
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+SL L +A N F + A LT L Q++ + F L L L+++H
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
N ++ + + L +L+TLD S N + L KSL L +N ++ +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + +L+ +SF S L LDL+ I + + L +L+ L L+ N +++ + +
Sbjct: 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SL+ L + ++ + IG +T+ L ++
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L+ L H+ V A L+KL L + + D F L++L+ L +A
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 69 NRIVAVSGAS-LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
N + ++ A+ +NLT LDLS L ++ + L LQ L + N++
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ L S+K L + Q + V LAGL L L NQI + L+ L +L +
Sbjct: 109 IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSI 164
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ---ELRLDDNDISMVT 123
+N++ ++ LA+LS LTTL N + I+PL SL E+ L DN IS V+
Sbjct: 165 GNNQVNDLT--PLANLSKLTTLRADDNKISD-----ISPLASLPNLIEVHLKDNQISDVS 217
Query: 124 PDVIGDNVTITTLT 137
P N+ I TLT
Sbjct: 218 PLANLSNLFIVTLT 231
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
C L + +LS + Q +V + +L L LS H+N + + + L+ L L
Sbjct: 12 CPANCLCASNILSCSKQQLPNVPQ-SLPSYTALLDLS-HNNLSRLRAEWTPTRLTNLHSL 69
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
L+HN + +S + + NL LDLS N L L + L + L++L+ L L +N I +V
Sbjct: 70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Query: 125 DVIGDNVTITTLTLS 139
+ D + L LS
Sbjct: 130 NAFEDMAQLQKLYLS 144
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 15 VLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
+L ++HN S +R L L SL HN ++ + +F + L +LDL+ N +
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTI 133
+ + L L L L +N + + ++ + LQ+L L N IS ++I D +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 134 TTLTL 138
L L
Sbjct: 163 PKLML 167
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 4 WCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 55
W +R L S L+VL ++ + ++ GA L L++L N I L +F
Sbjct: 38 WNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 97
Query: 56 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRL 114
LS+L L + ++ + HL L L+++HN +++ + + L +L+ L L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 115 DDNDISMV 122
N I +
Sbjct: 158 SSNKIQSI 165
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAH 68
LSSL+ L +S+ + L L L+ HN I + F L+ L HLDL+
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 69 NRIVAVSGASLAHLSNLT-------TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
N+I ++ L L + NF++ I L+EL LD N +
Sbjct: 160 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS 215
Query: 122 VTPDVIGDNVT 132
V PD I D +T
Sbjct: 216 V-PDGIFDRLT 225
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 39 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 98
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SLQ+L + +++ + IG T+ L ++
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ LS L L + N S+ GA +GL L L + LE+ L TL L++
Sbjct: 74 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNV 133
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNF--------LRALTQ---------------DL 102
AHN I + ++L+NL LDLS N LR L Q +
Sbjct: 134 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 193
Query: 103 ITP--LKS--LQELRLDDNDISMVTPDVIGDNVT 132
I P K L+EL LD N + V PD I D +T
Sbjct: 194 IQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLT 226
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV 122
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 40 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 99
Query: 105 PLKSLQEL 112
L SLQ+L
Sbjct: 100 GLSSLQKL 107
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ LS L L + N S+ GA +GL L L + LE+ L TL L++
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 132
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNF--------LRALTQ---------------DL 102
AHN I + ++L+NL LDLS N LR L Q +
Sbjct: 133 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 192
Query: 103 ITP--LKS--LQELRLDDNDISMVTPDVIGDNVT 132
I P K L+EL LD N + V PD I D +T
Sbjct: 193 IQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLT 225
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV 122
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 39 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 98
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SLQ+L + +++ + IG T+ L ++
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ LS L L + N S+ GA +GL L L + LE+ L TL L++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNF--------LRALTQ---------------DL 102
AHN I + ++L+NL LDLS N LR L Q +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 103 ITP--LKS--LQELRLDDNDISMVTPDVIGDNVT 132
I P K L+EL LD N + V PD I D +T
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLT 224
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV 122
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 105 PLKSLQEL 112
L SLQ+L
Sbjct: 98 GLSSLQKL 105
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 4 WCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 55
W +R L S L+VL ++ + ++ GA L L++L N I L +F
Sbjct: 39 WNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 98
Query: 56 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRL 114
LS+L L + ++ + HL L L+++HN +++ + + L +L+ L L
Sbjct: 99 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 115 DDNDISMV 122
N I +
Sbjct: 159 SSNKIQSI 166
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAH 68
LSSL+ L +S+ + L L L+ HN I + F L+ L HLDL+
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 69 NRIVAVSGASLAHLSNLT-------TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
N+I ++ L L + NF++ I L+EL LD N +
Sbjct: 161 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS 216
Query: 122 VTPDVIGDNVT 132
V PD I D +T
Sbjct: 217 V-PDGIFDRLT 226
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 40 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 99
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SLQ+L + +++ + IG T+ L ++
Sbjct: 100 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 134
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 43 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
+ NQI LE F L+ L+ LDL +N++ + L+ LT L L+ N L+++ +
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 103 ITPLKSLQELRLDDNDISMVTPDVI 127
LKSL + L +N D++
Sbjct: 98 FDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
+VL + NQ + + G L +LT L +NQ+ VL F L+ L+ L L N++ +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+ + +L +LT + L +N D++
Sbjct: 93 IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L L + +NQ + + G L +LT LS + NQ+ + +F L +L+H+ L +
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
Query: 69 N 69
N
Sbjct: 112 N 112
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+T L L N+I + L+ LT LDL +N L L + L L +L L+DN
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 119 ISMV 122
+ +
Sbjct: 90 LKSI 93
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
+L+ L LS+ NQ S+ RGA L LT + +N D
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 43 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
+ NQI LE F L+ L+ LDL +N++ + L+ LT L L+ N L+++ +
Sbjct: 46 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 105
Query: 103 ITPLKSLQELRLDDNDISMVTPDVI 127
LKSL + L +N D++
Sbjct: 106 FDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
+VL + NQ + + G L +LT L +NQ+ VL F L+ L+ L L N++ +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+ + +L +LT + L +N D++
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L L + +NQ + + G L +LT LS + NQ+ + +F L +L+H+ L +
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 119
Query: 69 N 69
N
Sbjct: 120 N 120
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+T L L N+I + L+ LT LDL +N L L + L L +L L+DN
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 119 ISMV 122
+ +
Sbjct: 98 LKSI 101
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
+L+ L LS+ NQ S+ RGA L LT + +N D
Sbjct: 84 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 124
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV 122
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ LS L L + N S+ GA +GL L L + LE+ L TL L++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNFLRAL 98
AHN I + ++L+NL LDLS N ++++
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAHN 69
+SLK L ++ N ++ L GL++L L H+ + + + S F +L L +LD++H
Sbjct: 373 TSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 70 ----------------RIVAVSGASL---------AHLSNLTTLDLSHNFLRALTQDLIT 104
++ ++G S L NLT LDLS L L+
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVT 132
L SLQ L + N + V PD I D +T
Sbjct: 492 SLSSLQVLNMASNQLKSV-PDGIFDRLT 518
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SLQ+L + +++ + IG T+ L ++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
LSSL+VL++A NQ SV G L L + H N D
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
L+ + +++NQ S + A GL L SL + N+I L F L +L L L N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
I + + L NL L L N L+ + + +PL+++Q + L N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 69 NRIVAVSGASLAHLSN-----LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
N IV G L + +T + L N ++ + +P K L+ + L +N IS +
Sbjct: 13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 124 PDVIGDNVTITTLTLSG 140
PD ++ +L L G
Sbjct: 73 PDAFQGLRSLNSLVLYG 89
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 94
+ +T + N I V+ +F L +DL++N+I ++ + L +L +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 95 LRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ L + L L SLQ L L+ N I+ + D D
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV 122
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ LS L L + N S+ GA +GL L L + LE+ L TL L++
Sbjct: 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNFLRAL 98
AHN I + ++L+NL LDLS N ++++
Sbjct: 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAHNR 70
SLK L ++ N ++ L GL++L L H+ + + + S F +L L +LD++H
Sbjct: 398 SLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 71 IVAVSGASLAHLSNLTTLDLSHN-FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
LS+L L ++ N F D+ T L++L L L + ++P
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 130 NVTITTLTLS 139
++ L +S
Sbjct: 517 LSSLQVLNMS 526
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN--QIDVLEDHSFRAL 58
MS + L +L L I+H G GL L L N Q + L D F L
Sbjct: 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTEL 493
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
L+ LDL+ ++ +S + LS+L L++SHN +L L SLQ L N
Sbjct: 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553
Query: 119 I 119
I
Sbjct: 554 I 554
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L +L L ++ Q + A L L L+ HN L+ ++ L++L LD +
Sbjct: 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551
Query: 69 NRIVAVSGASLAHL-SNLTTLDLSHN 93
N I+ L H S+L L+L+ N
Sbjct: 552 NHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SLQ+L + +++ + IG T+ L ++
Sbjct: 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV 122
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ LS L L + N S+ GA +GL L L + LE+ L TL L++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNFLRAL 98
AHN I + ++L+NL LDLS N ++++
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAHN 69
+SLK L ++ N ++ L GL++L L H+ + + + S F +L L +LD++H
Sbjct: 373 TSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 70 RIVAVSGASLAHLSNLTTLDLSHN-FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
LS+L L ++ N F D+ T L++L L L + ++P
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 129 DNVTITTLTLS 139
++ L +S
Sbjct: 492 SLSSLQVLNMS 502
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN--QIDVLEDHSFRAL 58
MS + L +L L I+H G GL L L N Q + L D F L
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTEL 469
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
L+ LDL+ ++ +S + LS+L L++SHN +L L SLQ L N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Query: 119 I 119
I
Sbjct: 530 I 530
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L +L L ++ Q + A L L L+ HN L+ ++ L++L LD +
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
Query: 69 NRIVAVSGASLAHL-SNLTTLDLSHN 93
N I+ L H S+L L+L+ N
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
N + L +SF + L LDL+ I + + LS+L+TL L+ N +++L +
Sbjct: 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 105 PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L SLQ+L + +++ + IG T+ L ++
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
L+ + +++NQ S + A GL L SL + N+I L F L +L L L N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
I + + L NL L L N L+ + + +PL+++Q + L N
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 69 NRIVAVSGASLAHLSN-----LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
N IV G L + +T + L N ++ + +P K L+ + L +N IS +
Sbjct: 13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 124 PDVIGDNVTITTLTLSG 140
PD ++ +L L G
Sbjct: 73 PDAFQGLRSLNSLVLYG 89
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 94
+ +T + N I V+ +F L +DL++N+I ++ + L +L +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 95 LRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ L + L L SLQ L L+ N I+ + D D
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQD 126
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+L+ L LS++ NQ S+ G L KLT L H N++ L + F L+ L L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N++ +V L++L + L N
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 1 MSIWCTVRRLSSLKVLSIAHN--QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 58
+ + C + +L +L+ L ++HN + S L L L +L+ HN+ L+ +F+
Sbjct: 338 LGVGC-LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKEC 396
Query: 59 STLSHLDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
L LDLA R+ + + +L L L+L++ FL Q L+ L L+ L L N
Sbjct: 397 PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN 456
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 50 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
++ +F +L +SH+DL+HN + S SL+HL + L+L+ N + ++ L+ L
Sbjct: 488 IDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQ 546
Query: 110 QELRLDDNDISMVTPDV 126
+ L N + ++
Sbjct: 547 STINLSHNPLDCTCSNI 563
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T + + L+ L + + G + GL+ L L N D L S +L+HL
Sbjct: 270 TFQCFTQLQELDLTATHLKGLPSG-MKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 66 LAHN-RIVAVSGASLAHLSNLTTLDLSHNFLRA 97
+ N + + + L L NL TLDLSHN + A
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA 361
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID---VLEDHSFRALSTLSH 63
+ L L+VL++ + + + LAGL L L+ N + + + + + +L
Sbjct: 418 FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV 477
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
L L+ ++++ + L ++ +DLSHN L + D ++ LK + L L N I++++
Sbjct: 478 LILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIIS 536
Query: 124 PDVI 127
P ++
Sbjct: 537 PRLL 540
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 43 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
++NQI LE F L L L N++ A+ L+ LT LDL+ N L+++ +
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100
Query: 103 ITPLKSLQELRLDDNDISMVTPDVI 127
LKSL + L +N D++
Sbjct: 101 FDNLKSLTHIYLYNNPWDCECRDIM 125
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
NQI LE F +L+ L++L+LA N++ A+ L+ LT L L N L+++ +
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 105 PLKSLQELRLDDNDISMVTPDVI 127
LKSL + L +N D++
Sbjct: 110 NLKSLTHIYLFNNPWDCECSDIL 132
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+ L L++A NQ +++ G L KLT L+ H NQ+ + F L +L+H+ L +N
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C R L+S+ +VL + NQ + + G L +LT L+ NQ+ L F
Sbjct: 26 CQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFD 85
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
L+ L+HL L N++ ++ +L +LT + L +N D++
Sbjct: 86 KLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ L S+K L + Q + V LAGL L L NQI + L+ L +L +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSI 158
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ---ELRLDDNDISMVT 123
+ ++ ++ LA+LS LTTL N + I+PL SL E+ L +N IS V+
Sbjct: 159 GNAQVSDLT--PLANLSKLTTLKADDNKISD-----ISPLASLPNLIEVHLKNNQISDVS 211
Query: 124 PDVIGDNVTITTLT 137
P N+ I TLT
Sbjct: 212 PLANTSNLFIVTLT 225
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 43 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
+ N+I LE F L+ L+ LDL +N++ + L+ LT L L+ N L+++ +
Sbjct: 38 YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 103 ITPLKSLQELRLDDNDISMVTPDVI 127
L+SL + L +N D++
Sbjct: 98 FDNLRSLTHIWLLNNPWDCACSDIL 122
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L L + +NQ + + G L +LT LS + NQ+ + +F L +L+H+ L +
Sbjct: 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLN 111
Query: 69 N 69
N
Sbjct: 112 N 112
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L L NRI + L+ LT LDL +N L L + L L +L L+DN + +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 49
+L+ L LS+ NQ S+ RGA L LT + +N D
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDC 116
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
S L HLD++ N++ +++ + L L++S N L PLKSLQ L L +N
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280
Query: 119 ISMVTPDVI-GDNVTITTLTLSG 140
+ PD + G T+T L LSG
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSG 303
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T+ S L L ++ N S +L L KL L N ++ + TL L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L N + + L++ +NL + LS+N L I L++L L+L +N S P
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 126 VIGD 129
+GD
Sbjct: 533 ELGD 536
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDK--LT-SLSCHHNQIDVLEDHSFRALSTLS 62
T+ ++ LKVL ++ N+FS +L L LT LS ++ +L + +TL
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
L L +N +L++ S L +L LS N+L + L L++L+L
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAG-LDKLTSLSCHHNQI--------------------- 47
L SL+ LS+A N+F+ L+G D LT L N
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 48 ----DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-NLTTLDL-SHNFLRALTQD 101
L + + L LDL+ N SL +LS +L TLDL S+NF + +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 102 LI-TPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L P +LQEL L +N + P + + + +L LS
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 88 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
LD+S+N L I + L L L NDIS PD +GD + L LS
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 44 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + ++ L L+L HN I + L L LDLS N L +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 104 TPLKSLQELRLDDNDISMVTPDV 126
+ L L E+ L +N++S P++
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEM 723
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 36/86 (41%)
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+F ++ LD+++N + + + L L+L HN + D + L+ L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLS 139
L N + P + +T + LS
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLS 712
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
S L HLD++ N++ +++ + L L++S N L PLKSLQ L L +N
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 277
Query: 119 ISMVTPDVI-GDNVTITTLTLSG 140
+ PD + G T+T L LSG
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSG 300
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T+ S L L ++ N S +L L KL L N ++ + TL L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L N + + L++ +NL + LS+N L I L++L L+L +N S P
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 126 VIGD 129
+GD
Sbjct: 530 ELGD 533
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDK--LT-SLSCHHNQIDVLEDHSFRALSTLS 62
T+ ++ LKVL ++ N+FS +L L LT LS ++ +L + +TL
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
L L +N +L++ S L +L LS N+L + L L++L+L
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAG-LDKLTSLSCHHNQI--------------------- 47
L SL+ LS+A N+F+ L+G D LT L N
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 48 ----DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-NLTTLDL-SHNFLRALTQD 101
L + + L LDL+ N SL +LS +L TLDL S+NF + +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 102 LI-TPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L P +LQEL L +N + P + + + +L LS
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 88 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
LD+S+N L I + L L L NDIS PD +GD + L LS
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 44 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
+N + ++ L L+L HN I + L L LDLS N L +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 104 TPLKSLQELRLDDNDISMVTPDV 126
+ L L E+ L +N++S P++
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPEM 720
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 36/86 (41%)
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+F ++ LD+++N + + + L L+L HN + D + L+ L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLS 139
L N + P + +T + LS
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLS 709
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 10 LSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
L +L+ L++ N F + +L L +L L + ++ H+F +L ++H+DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+HNR+ + S +L+HL + L+L+ N + + L+ L + + L N + ++
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T S L+ L + S + G L GL L L N+ + L S +L+HL
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 66 LAHN-RIVAVSGASLAHLSNLTTLDLSHN 93
+ N + + + L +L NL LDLSH+
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHD 360
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 30/124 (24%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ RL+ L LS+ NQ S + LAGL KL +L N I L RAL+ L +LD+
Sbjct: 149 LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDV 201
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ H SNL + N D S+VTP++
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEI 238
Query: 127 IGDN 130
I D+
Sbjct: 239 ISDD 242
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAHN 69
+SLK L ++ N ++ L GL++L L H+ + + + S F +L L +LD++H
Sbjct: 78 TSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 70 RIVAVSGASLAHLSNLTTLDLSHN-FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
LS+L L ++ N F D+ T L++L L L + ++P
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 129 DNVTITTLTLS 139
++ L +S
Sbjct: 197 SLSSLQVLNMS 207
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN--QIDVLEDHSFRAL 58
MS + L +L L I+H G GL L L N Q + L D F L
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTEL 174
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
L+ LDL+ ++ +S + LS+L L++SHN +L L SLQ L N
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Query: 119 I 119
I
Sbjct: 235 I 235
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L +L L ++ Q + A L L L+ HN L+ ++ L++L LD +
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 69 NRIVAVSGASLAHL-SNLTTLDLSHNFLRALT--QDLITPLKSLQELRLDDNDISMVTP 124
N I+ L H S+L L+L+ N Q + +K ++L ++ + TP
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
++L + NQ + + G L L L NQ+ L F +L+ L+ LDL N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
+ A L +L L + N L L + I L L L LD N + +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSI 150
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +LK L + NQ ++ G L +LT L NQ+ VL F L L L + N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
++ + + L++LT L L N L+++ L SL L N D++
Sbjct: 123 KLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 7 VRRLSSLKVLSIAHN--QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
+ +L +L+ L ++H+ + S L L L L+ +N+ LED +F+ L L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 65 DLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
D+A + V + +L L L+LSH L Q L+ L+ L+ L L N
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID---VLEDHSFRALSTLSH 63
+ L L+VL+++H + + LAGL L L+ N + + + + + +L
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
L L+ ++++ + L N+ LDLSHN L + D ++ LK L L + N+I ++
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIP 538
Query: 124 PDVI 127
P ++
Sbjct: 539 PHLL 542
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 50 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
++ +F L ++HLDL+HN + S +L+HL L L+++ N +R + L+ L
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQ 548
Query: 110 QELRLDDNDISMVTPDV 126
+ L N + ++
Sbjct: 549 SIINLSHNPLDCTCSNI 565
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 58 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
L+ L +L + H + L+ + L TLD S+N L I+ L +L + D N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 118 DISMVTPDVIG 128
IS PD G
Sbjct: 160 RISGAIPDSYG 170
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
LS L L I NQ S + A+ L KL L+ NQI + LS L+ L L +
Sbjct: 241 NLSQLTWLEIGTNQISDIN--AVKDLTKLKXLNVGSNQISDIS--VLNNLSQLNSLFLNN 296
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQE 111
N++ + L+NLTTL LS N + I PL SL +
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQNHITD-----IRPLASLSK 334
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST-LSHLD 65
+ L+ L LS+ +NQ + LA L L + + NQI D + A T L+ L
Sbjct: 173 IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQI---TDITPVANXTRLNSLK 227
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHN------FLRALTQ--------------DLITP 105
+ +N+I +S LA+LS LT L++ N ++ LT+ ++
Sbjct: 228 IGNNKITDLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNN 285
Query: 106 LKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L L L L++N + +VIG +TTL LS
Sbjct: 286 LSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS 319
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L LS+ NQ S + LAGL KL +L N I L RAL+ L +LD+
Sbjct: 154 RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLE 206
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ H SNL + N D S+VTP++I
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEIIS 243
Query: 129 DN 130
D+
Sbjct: 244 DD 245
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L LS+ NQ S + LAGL KL +L N I L RAL+ L +LD+
Sbjct: 154 RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLE 206
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ H SNL + N D S+VTP++I
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEIIS 243
Query: 129 DN 130
D+
Sbjct: 244 DD 245
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L LS+ NQ S + LAGL KL +L N I L RAL+ L +LD+
Sbjct: 152 RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLE 204
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ H SNL + N D S+VTP++I
Sbjct: 205 LFSQECLNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEIIS 241
Query: 129 DN 130
D+
Sbjct: 242 DD 243
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L LS+ NQ S + LAGL KL +L N I L RAL+ L +LD+
Sbjct: 174 RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLE 226
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ H SNL + N D S+VTP++I
Sbjct: 227 LFSQECLNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEIIS 263
Query: 129 DN 130
D+
Sbjct: 264 DD 265
>pdb|3OG9|A Chain A, Structure Of Yahd With Malic Acid
pdb|3OG9|B Chain B, Structure Of Yahd With Malic Acid
Length = 209
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
++I+A G L LD H FL D+I P K+ +L+ D D
Sbjct: 128 DKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLED 177
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-----------DVLEDHS 54
++++ L L +NQ + A KL SL+ +NQI + +E+ S
Sbjct: 325 SLQKXKKLGXLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383
Query: 55 F--------------RALSTLSHLDLAHNRIVAVSGASLAHLS-------NLTTLDLSHN 93
F +++S S +D ++N I +V G + L N+++++LS+N
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ ++L + L + L N ++ + + + D
Sbjct: 444 QISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKD 479
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 44 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN-LTTLDLSHNFLRALTQDL 102
+N+I +L D S + +LDL N I V+ A LA S+ L L+L +NF+ + +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188
Query: 103 ITPLKSLQELRLDDNDISMVTPDV 126
+ L+ L L N ++ + P+
Sbjct: 189 V--FAKLKTLDLSSNKLAFMGPEF 210
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
S++ L A+N S V G ++ +N+I +L D S + +LDL N I
Sbjct: 100 SIETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 72 VAVSGASLAHLSN-LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
V+ A LA S+ L L+L +NF+ + ++ L+ L L N ++ + P+
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE 209
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-------IDVLEDHSFRALSTLSH 63
LKVLSIA + + LTSL N + L H F A+ L+
Sbjct: 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 97
+ V A A +LDLSHN LRA
Sbjct: 205 RNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238
>pdb|3RIO|A Chain A, Crystal Structure Of Glct Cat-Prdi
Length = 180
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH-- 63
TV+++ + VL +H+++S V L G + Q DV+ED + + L
Sbjct: 16 TVKKVLNNNVLIASHHKYSEV---VLIG----KGIGFGKKQDDVIEDKGYDKMFILKDEK 68
Query: 64 --------LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQE 111
LD ++V +S + H+SN T L+ + ALT + +K Q+
Sbjct: 69 EQKQFKKLLDYVDEKLVDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQ 124
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 0.73, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
L+ L L N + + A + +LSNL LDLSHN L +L +L
Sbjct: 249 LTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAEL 289
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS+L++ +I+ N F D LT L + N + L + LS L LDL+HN
Sbjct: 231 LSNLQIFNISANIFK---------YDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHN 280
Query: 70 RIVAV 74
R+ ++
Sbjct: 281 RLTSL 285
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 79 LAHLSNL---TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L HL L T LDLSHN LRAL L L+ L+ L+ DN + V
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENV 501
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 79 LAHLSNL---TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L HL L T LDLSHN LRAL L L+ L+ L+ DN + V
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENV 501
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
RL+ L LS+ NQ S + LA L KL +L N I L RAL L +LD+
Sbjct: 149 RLTKLDTLSLEDNQISDIV--PLACLTKLQNLYLSKNHISDL-----RALCGLKNLDVLE 201
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ H SNL + N D S+VTP++I
Sbjct: 202 LFSQEALNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEIIS 238
Query: 129 DN 130
D+
Sbjct: 239 DD 240
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 32/123 (26%)
Query: 9 RLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
RL+ L LS+ NQ +RR LA L KL +L N I L RAL L +LD+
Sbjct: 152 RLTKLDTLSLEDNQ---IRRIVPLARLTKLQNLYLSKNHISDL-----RALRGLKNLDVL 203
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+ H SNL + N D S+VTP++I
Sbjct: 204 ELFSQEALNKPINHQSNLVVPNTVKN-----------------------TDGSLVTPEII 240
Query: 128 GDN 130
D+
Sbjct: 241 SDD 243
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+L+ NRI L NLT L+LS N L+ ++ + PLK L+ L+
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST--LEPLKKLECLK 123
>pdb|3KXC|C Chain C, Mutant Transport Protein
Length = 158
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLS----HLDLAHNRIVAVSGASLAHLSNL 85
++ +L +H I VL+D+ FR L+ +S +L+ A + G LSNL
Sbjct: 80 QIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNL 133
>pdb|2CFH|C Chain C, Structure Of The Bet3-Tpc6b Core Of Trapp
pdb|2CFH|D Chain D, Structure Of The Bet3-Tpc6b Core Of Trapp
Length = 158
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLS----HLDLAHNRIVAVSGASLAHLSNL 85
++ +L +H I VL+D+ FR L+ +S +L+ A + G LSNL
Sbjct: 80 QIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNL 133
>pdb|2BJN|A Chain A, X-Ray Structure Of Human Tpc6
pdb|2BJN|B Chain B, X-Ray Structure Of Human Tpc6
Length = 160
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLS----HLDLAHNRIVAVSGASLAHLSNL 85
++ +L +H I VL+D+ FR L+ +S +L+ A + G LSNL
Sbjct: 82 QIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNL 135
>pdb|2D2M|D Chain D, Structure Of An Extracellular Giant Hemoglobin Of The
Gutless Beard Worm Oligobrachia Mashikoi
pdb|2D2N|D Chain D, Structure Of An Extracellular Giant Hemoglobin Of The
Gutless Beard Worm Oligobrachia Mashikoi
Length = 145
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSN 84
S LSHL+ H I V+GA++ HLS
Sbjct: 87 SLLSHLNAQHRAISGVTGAAVTHLSQ 112
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 36 KLTSLSCHHNQIDVLEDHSF----RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91
K+ +L + D LE + A + + LD+ NR + + + T L ++
Sbjct: 244 KVVNLKDGTEKTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIA 303
Query: 92 HNFLRALTQD 101
H L +T D
Sbjct: 304 HRDLEGITMD 313
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 26.2 bits (56), Expect = 5.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 75 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTI 133
+ AS L NL TL L AL P L E+R D D P+++G V I
Sbjct: 182 TNASRTLLFNLHTLAWDPELLEALG----IPAALLPEVRPSDGDFGETLPELLGAPVPI 236
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
LTSL CH++ I + L+ L+ L N I + L+ +NLT L N L
Sbjct: 44 LTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT 98
Query: 97 ALTQDLITPLKSLQELRLDDNDIS 120
L +TPL L L D N ++
Sbjct: 99 NLD---VTPLTKLTYLNCDTNKLT 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,519,720
Number of Sequences: 62578
Number of extensions: 112220
Number of successful extensions: 794
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 399
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)