Query psy8880
Match_columns 141
No_of_seqs 123 out of 1994
Neff 11.4
Searched_HMMs 46136
Date Fri Aug 16 21:44:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 6.8E-19 1.5E-23 131.3 9.3 138 3-140 156-293 (968)
2 PLN00113 leucine-rich repeat r 99.8 2.1E-18 4.5E-23 128.7 9.6 138 3-140 180-317 (968)
3 KOG4194|consensus 99.7 1.2E-19 2.7E-24 125.0 -0.4 135 7-141 289-426 (873)
4 KOG0617|consensus 99.7 8.9E-20 1.9E-24 108.8 -5.5 135 3-141 48-183 (264)
5 KOG4194|consensus 99.7 1.9E-18 4.2E-23 119.2 -1.3 131 11-141 269-402 (873)
6 PF14580 LRR_9: Leucine-rich r 99.5 3.2E-15 7E-20 90.8 3.3 128 7-138 15-147 (175)
7 KOG0617|consensus 99.5 1.9E-16 4.2E-21 94.7 -3.1 131 7-141 29-160 (264)
8 KOG0472|consensus 99.5 9.9E-16 2.1E-20 102.0 -3.5 127 9-141 181-307 (565)
9 KOG0618|consensus 99.5 3.3E-15 7.1E-20 107.6 -1.8 127 12-141 360-486 (1081)
10 KOG0444|consensus 99.4 6.8E-15 1.5E-19 103.3 -1.2 136 3-141 95-255 (1255)
11 KOG0472|consensus 99.4 9.4E-16 2E-20 102.0 -7.1 135 2-141 151-285 (565)
12 KOG0444|consensus 99.4 4.9E-14 1.1E-18 99.1 -0.1 116 3-121 70-187 (1255)
13 PLN03150 hypothetical protein; 99.4 2.6E-12 5.6E-17 92.3 8.3 106 13-118 420-526 (623)
14 PF14580 LRR_9: Leucine-rich r 99.4 6E-13 1.3E-17 80.9 4.2 107 31-141 15-123 (175)
15 PF13855 LRR_8: Leucine rich r 99.4 1.1E-12 2.4E-17 66.6 4.4 59 12-70 2-60 (61)
16 KOG0618|consensus 99.4 1E-13 2.3E-18 100.1 0.7 132 4-138 376-507 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.3 6.6E-13 1.4E-17 88.3 3.6 136 5-140 75-230 (319)
18 PF13855 LRR_8: Leucine rich r 99.3 2.2E-12 4.7E-17 65.6 4.7 59 60-118 2-60 (61)
19 KOG4237|consensus 99.3 4.5E-14 9.9E-19 93.8 -2.7 108 15-122 71-179 (498)
20 KOG4237|consensus 99.3 5.4E-14 1.2E-18 93.4 -2.4 124 15-141 50-174 (498)
21 PLN03150 hypothetical protein; 99.3 1.3E-11 2.8E-16 88.8 8.9 106 36-141 419-525 (623)
22 cd00116 LRR_RI Leucine-rich re 99.3 1.9E-12 4.1E-17 86.1 3.6 136 6-141 131-288 (319)
23 KOG1259|consensus 99.3 4.6E-13 1E-17 86.8 -1.1 130 6-141 279-409 (490)
24 PLN03210 Resistant to P. syrin 99.2 4.6E-10 1E-14 85.8 10.9 104 34-140 610-713 (1153)
25 PLN03210 Resistant to P. syrin 99.1 6E-10 1.3E-14 85.2 10.6 65 4-69 627-691 (1153)
26 KOG0532|consensus 99.1 3.8E-12 8.3E-17 88.3 -1.8 133 2-141 112-244 (722)
27 KOG1259|consensus 99.1 1.2E-11 2.5E-16 80.4 0.3 115 3-122 299-414 (490)
28 PRK15387 E3 ubiquitin-protein 99.1 2.9E-10 6.3E-15 83.0 6.2 122 11-141 302-455 (788)
29 PRK15387 E3 ubiquitin-protein 99.1 1.4E-09 3E-14 79.5 9.0 52 12-71 223-274 (788)
30 PRK15370 E3 ubiquitin-protein 99.0 1E-09 2.2E-14 80.2 7.3 100 11-122 199-298 (754)
31 PRK15370 E3 ubiquitin-protein 99.0 9.1E-10 2E-14 80.5 6.4 118 12-141 242-377 (754)
32 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.5E-14 75.0 4.1 130 6-141 158-287 (394)
33 PF13306 LRR_5: Leucine rich r 98.9 2.6E-08 5.7E-13 57.9 7.8 124 5-134 6-129 (129)
34 KOG3207|consensus 98.9 9.1E-10 2E-14 74.5 1.5 136 6-141 167-311 (505)
35 KOG1859|consensus 98.8 1.2E-11 2.6E-16 88.3 -8.1 123 13-141 166-289 (1096)
36 KOG1909|consensus 98.8 1.1E-09 2.5E-14 72.0 1.5 138 3-140 84-250 (382)
37 KOG1644|consensus 98.8 1.1E-08 2.4E-13 62.9 5.6 123 14-139 22-148 (233)
38 KOG0532|consensus 98.8 2.9E-11 6.3E-16 84.0 -6.3 132 3-141 90-221 (722)
39 COG4886 Leucine-rich repeat (L 98.8 4.8E-09 1E-13 72.0 2.6 129 9-141 114-265 (394)
40 KOG4658|consensus 98.7 1.1E-08 2.3E-13 76.2 4.1 126 11-139 523-650 (889)
41 KOG3207|consensus 98.7 1.9E-09 4.1E-14 73.0 -0.8 111 7-117 117-232 (505)
42 KOG4579|consensus 98.7 8E-10 1.7E-14 64.1 -2.9 87 34-122 52-138 (177)
43 KOG1644|consensus 98.6 9.1E-08 2E-12 59.0 5.4 103 12-116 43-149 (233)
44 KOG1859|consensus 98.6 2.8E-10 6.1E-15 81.5 -6.2 114 3-121 179-293 (1096)
45 PF12799 LRR_4: Leucine Rich r 98.6 1.6E-07 3.6E-12 44.1 3.9 38 84-122 2-39 (44)
46 PF13306 LRR_5: Leucine rich r 98.5 8.6E-07 1.9E-11 51.5 7.7 109 27-140 4-112 (129)
47 KOG0531|consensus 98.5 1.2E-08 2.7E-13 70.5 -0.4 109 7-121 91-200 (414)
48 KOG0531|consensus 98.5 1.3E-08 2.8E-13 70.4 -0.5 126 9-141 70-196 (414)
49 KOG4579|consensus 98.5 9.1E-09 2E-13 59.8 -1.2 115 7-124 49-163 (177)
50 PF12799 LRR_4: Leucine Rich r 98.4 4.3E-07 9.4E-12 42.7 3.8 38 12-50 2-39 (44)
51 KOG1909|consensus 98.4 1.1E-07 2.3E-12 63.0 2.0 132 10-141 156-308 (382)
52 KOG3665|consensus 98.4 2.7E-07 5.9E-12 67.4 3.7 128 12-141 123-260 (699)
53 KOG4658|consensus 98.4 2.5E-07 5.4E-12 69.2 3.1 109 9-118 543-653 (889)
54 COG5238 RNA1 Ran GTPase-activa 98.4 2.9E-07 6.3E-12 59.5 2.6 137 4-140 85-251 (388)
55 KOG2982|consensus 98.3 1.3E-06 2.8E-11 57.3 3.8 67 3-69 89-156 (418)
56 KOG3665|consensus 98.0 8.5E-06 1.8E-10 59.8 4.4 112 8-121 145-264 (699)
57 KOG2120|consensus 98.0 1.2E-06 2.6E-11 57.5 -0.6 136 5-140 228-372 (419)
58 KOG2739|consensus 97.9 3.1E-06 6.7E-11 54.2 1.0 103 33-137 41-149 (260)
59 KOG2123|consensus 97.9 1.7E-07 3.6E-12 60.8 -4.7 101 9-113 17-123 (388)
60 KOG2982|consensus 97.9 5.7E-06 1.2E-10 54.4 1.1 84 34-117 70-156 (418)
61 PRK15386 type III secretion pr 97.7 0.00033 7.1E-09 48.5 7.9 56 7-69 48-104 (426)
62 KOG2739|consensus 97.4 7.9E-05 1.7E-09 47.9 1.9 105 9-115 41-151 (260)
63 KOG2123|consensus 97.4 1.9E-06 4.1E-11 56.0 -5.4 100 34-137 18-123 (388)
64 COG5238 RNA1 Ran GTPase-activa 97.3 0.00022 4.8E-09 46.6 3.0 112 30-141 87-224 (388)
65 PRK15386 type III secretion pr 96.8 0.0046 1E-07 43.1 5.9 63 31-99 48-111 (426)
66 KOG2120|consensus 96.8 0.00014 3E-09 48.2 -1.6 110 6-117 255-373 (419)
67 PF00560 LRR_1: Leucine Rich R 96.7 0.0013 2.7E-08 25.9 1.5 11 38-48 3-13 (22)
68 PF13504 LRR_7: Leucine rich r 95.7 0.0097 2.1E-07 21.7 1.5 9 110-118 4-12 (17)
69 smart00369 LRR_TYP Leucine-ric 95.7 0.015 3.2E-07 23.6 2.2 18 84-101 3-20 (26)
70 smart00370 LRR Leucine-rich re 95.7 0.015 3.2E-07 23.6 2.2 18 84-101 3-20 (26)
71 KOG0473|consensus 94.5 0.00027 5.8E-09 45.2 -6.9 89 30-121 37-125 (326)
72 KOG3864|consensus 94.5 0.0072 1.6E-07 37.9 -0.7 82 35-116 101-185 (221)
73 KOG3864|consensus 94.3 0.0064 1.4E-07 38.1 -1.2 82 11-92 101-185 (221)
74 PF13516 LRR_6: Leucine Rich r 93.1 0.024 5.3E-07 22.5 -0.1 15 11-25 2-16 (24)
75 KOG1947|consensus 92.1 0.095 2.1E-06 37.0 1.7 59 59-117 243-305 (482)
76 KOG0473|consensus 91.2 0.0011 2.4E-08 42.5 -7.7 79 58-139 41-119 (326)
77 KOG4341|consensus 90.1 0.13 2.9E-06 36.0 0.9 130 9-138 292-433 (483)
78 KOG1947|consensus 89.2 0.38 8.2E-06 34.0 2.6 90 6-95 209-307 (482)
79 smart00365 LRR_SD22 Leucine-ri 87.6 0.69 1.5E-05 18.9 1.9 16 107-122 2-17 (26)
80 smart00368 LRR_RI Leucine rich 87.0 0.66 1.4E-05 19.1 1.7 15 107-121 2-16 (28)
81 smart00364 LRR_BAC Leucine-ric 82.9 1 2.2E-05 18.4 1.3 14 85-98 4-17 (26)
82 KOG4341|consensus 80.4 1.9 4.1E-05 30.6 2.6 115 4-118 313-437 (483)
83 smart00367 LRR_CC Leucine-rich 79.1 1.5 3.3E-05 17.5 1.2 11 11-21 2-12 (26)
84 KOG3763|consensus 77.8 1.4 3E-05 32.3 1.4 36 34-69 217-254 (585)
85 TIGR00864 PCC polycystin catio 74.6 2.9 6.3E-05 36.6 2.5 32 65-96 1-32 (2740)
86 KOG4308|consensus 72.2 0.12 2.5E-06 37.2 -5.0 118 4-121 165-304 (478)
87 KOG3763|consensus 71.3 3.3 7.2E-05 30.4 1.9 65 57-121 216-284 (585)
88 TIGR00864 PCC polycystin catio 65.1 4.8 0.0001 35.4 1.9 32 17-48 1-32 (2740)
89 smart00446 LRRcap occurring C- 25.5 30 0.00065 14.1 0.3 13 7-19 9-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=6.8e-19 Score=131.29 Aligned_cols=138 Identities=27% Similarity=0.246 Sum_probs=73.9
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|..++.+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|+.+++++|.+....|..+..+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 34455566666666666666555445555555666666666555554444455555555555555555554444555555
Q ss_pred CCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|++|++++|.+.+..+..++.+++|+.|++++|.+++..|..+.++++|+.|++++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 5555555555555544444445555555555555555444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=2.1e-18 Score=128.74 Aligned_cols=138 Identities=28% Similarity=0.289 Sum_probs=75.0
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|..+.++++|++|++++|.+....|..+..+++|+++++++|.+....+..+..+++|+.|++++|.+....|..+..+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 45556666666666666666655555555566666666666666555444455555566666665555554445555555
Q ss_pred CCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+.++++|+.+++++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 5555555555555444443344444555555555544444444444444444444443
No 3
>KOG4194|consensus
Probab=99.75 E-value=1.2e-19 Score=125.00 Aligned_cols=135 Identities=29% Similarity=0.382 Sum_probs=100.0
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+-++..|+.|++++|.++.+.++....+++|+.|+++.|+++.+++..|..+..|++|+++.|+++......|..+++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 44566666677777777666666666677777777777777777777777777777777777777666666677777788
Q ss_pred EEEcCCCcCcccCh---hhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQ---DLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.|++.+|.+++... ..+..+++|+.|.+.+|++..+...+|..++.|++||+.+|
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 88888887776543 34667888888888888888887788888888888888876
No 4
>KOG0617|consensus
Probab=99.70 E-value=8.9e-20 Score=108.76 Aligned_cols=135 Identities=29% Similarity=0.448 Sum_probs=97.8
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceec-chhhcC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAH 81 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~ 81 (141)
+|..+..+.+|+.+++.+|++.+++. .+..+++++++++..|++.-.+. .|+.+|.++.+|+..|.+.... |..|-.
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcCcc-ccCCCchhhhhhccccccccccCCcchhH
Confidence 45566677777777777777777633 56667777777777766665543 6677777777777777765433 555556
Q ss_pred CCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 82 ~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++.|+.+-+++|.+..+|++ ++++++|+.|.+.+|.+... |.+++.+..|+++.++||
T Consensus 126 m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc
Confidence 66777777777777777776 68889999999988888776 778888888888888876
No 5
>KOG4194|consensus
Probab=99.68 E-value=1.9e-18 Score=119.20 Aligned_cols=131 Identities=30% Similarity=0.426 Sum_probs=64.2
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
.+++++++..|+++.+..+++.++..|+.|+++.|.|+.+..+.+..+++|++|+++.|+++...++.|..+..|+.|++
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 33444444444444444444444444444455555444444444444445555555555555554444444555555555
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccC---CCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVT---PDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~L~~l~l~~n 141 (141)
+.|++..+....+..+.+|+.|++..|.++..+ ...|..+++|+.|++.||
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 555555554444555555555555555544321 233444555555555554
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.55 E-value=3.2e-15 Score=90.77 Aligned_cols=128 Identities=32% Similarity=0.388 Sum_probs=53.5
Q ss_pred hcCCCCccEEEccCCccccccccccC-CCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
+.+..+++.|++.++.++.+. .+. .+.+++.|++++|.++.+. .+..++.|+.|++++|.+..........+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 445557899999999999863 354 5789999999999999886 57788999999999999988754323468999
Q ss_pred CEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccC---CCCcCCCCceeEEEc
Q psy8880 86 TTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVT---PDVIGDNVTITTLTL 138 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~L~~l~l 138 (141)
+.|.+++|.+..+.. ..++.+++|+.|++.+|+++... ...+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999987654 45778999999999999998641 134556788887764
No 7
>KOG0617|consensus
Probab=99.53 E-value=1.9e-16 Score=94.65 Aligned_cols=131 Identities=27% Similarity=0.409 Sum_probs=113.2
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+-.+.+++.+.+++|++..++| .++.+.+++.+++.+|+++.++. .++.++.++.++++-|++... |..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~l-prgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNIL-PRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcC-ccccCCCchhh
Confidence 3456677889999999999866 47889999999999999999987 788899999999999988665 78899999999
Q ss_pred EEEcCCCcCccc-ChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRAL-TQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+++..|.+... .|..|..+..|+.|.+++|.+... |..++++++|+.+.+++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccC
Confidence 999999988753 345577788999999999998876 777999999999999876
No 8
>KOG0472|consensus
Probab=99.47 E-value=9.9e-16 Score=101.95 Aligned_cols=127 Identities=33% Similarity=0.504 Sum_probs=102.6
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l 88 (141)
.++.|++++...|-+..+++ .++.+.++.-+|+..|++..++ .|.++..+++++++.|++.....+-..++.++..+
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 36666666666666666644 5777888888888888888777 78888888999999998887766666688999999
Q ss_pred EcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 89 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 89 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++.+|++...|.+ +..+.+|.++|+++|.+++. |..++++ .|+.+.+.||
T Consensus 258 DLRdNklke~Pde-~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 258 DLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGN 307 (565)
T ss_pred eccccccccCchH-HHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCC
Confidence 9999999998766 67888999999999999987 6678888 7888888776
No 9
>KOG0618|consensus
Probab=99.46 E-value=3.3e-15 Score=107.60 Aligned_cols=127 Identities=26% Similarity=0.345 Sum_probs=65.7
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcC
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 91 (141)
.|+.|++.+|.+++..-+.+..+++|+.|++++|+++..+...+..+..|+.|++++|.+... |..+..++.|++|-..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhc
Confidence 344455555555544444455555555555555555555555555555555555555555544 2444455555555555
Q ss_pred CCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 92 HNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 92 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|.+...| .+..++.|+.+|++.|.++......--..+.|++||++||
T Consensus 439 sN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 439 SNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred CCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 55555554 2445555555555555555443222222245555555554
No 10
>KOG0444|consensus
Probab=99.44 E-value=6.8e-15 Score=103.29 Aligned_cols=136 Identities=29% Similarity=0.439 Sum_probs=92.3
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|..+-.+..|..+++++|++.+. |..+...++.-.|++++|+|..++...|-++..|-.||++.|++...+| +...+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-HHHHH
Confidence 455666677788888888887777 3356667777777777777777777666677777777777777766643 44556
Q ss_pred CCcCEEEcCCCcCccc-------------------------ChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEE
Q psy8880 83 SNLTTLDLSHNFLRAL-------------------------TQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLT 137 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~-------------------------~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 137 (141)
.+|+.|.+++|.+... .|..+..+.+|..++++.|.++.+ |+.+-++++|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheec
Confidence 6666666666643311 122245566777777777777765 67777778888888
Q ss_pred ccCC
Q psy8880 138 LSGE 141 (141)
Q Consensus 138 l~~n 141 (141)
+++|
T Consensus 252 LS~N 255 (1255)
T KOG0444|consen 252 LSGN 255 (1255)
T ss_pred cCcC
Confidence 8776
No 11
>KOG0472|consensus
Probab=99.41 E-value=9.4e-16 Score=102.04 Aligned_cols=135 Identities=27% Similarity=0.381 Sum_probs=112.2
Q ss_pred chhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcC
Q psy8880 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 81 (141)
Q Consensus 2 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 81 (141)
++|+.+.++.++..+++.++.+...++.... |+.+++++...|-++.+++ .++.+.++..+++..|.+...+ .|.+
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~g 226 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRFLP--EFPG 226 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhcccccCC--CCCc
Confidence 4677777777777788888888877666555 8888888888888888777 6677888888888888887663 5778
Q ss_pred CCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 82 ~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+..|..+.++.|.+..++.+..++++++..+|+.+|++... |+++.-+.+|.++|+++|
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNN 285 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCC
Confidence 88889999999999999888888999999999999999987 778888899999999987
No 12
>KOG0444|consensus
Probab=99.38 E-value=4.9e-14 Score=99.09 Aligned_cols=116 Identities=26% Similarity=0.371 Sum_probs=98.1
Q ss_pred hhhhhcCCCCccEEEccCCccc--cccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhc
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFS--SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 80 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 80 (141)
+-..+..++.|+.+.+++|++. ++ |..+..+..|..+|+++|++...+. .+....++-.|+++.|++..++..-+-
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGi-P~diF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~IetIPn~lfi 147 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGI-PTDIFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIETIPNSLFI 147 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCC-Cchhcccccceeeecchhhhhhcch-hhhhhcCcEEEEcccCccccCCchHHH
Confidence 3446788999999999999886 44 4456789999999999999999876 677788899999999999998777788
Q ss_pred CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
+++-|-.|++++|++..+||. +..+..|++|.+++|++..
T Consensus 148 nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 899999999999999999886 6777888888888887644
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=2.6e-12 Score=92.34 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=53.3
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
++.|+++++.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....|+.++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455555555544444555555555555555555544444455555555555555555544455555555555555555
Q ss_pred CcCcccChhhcCCC-CCCCEEEcCCCC
Q psy8880 93 NFLRALTQDLITPL-KSLQELRLDDND 118 (141)
Q Consensus 93 n~l~~~~~~~~~~~-~~L~~l~l~~n~ 118 (141)
|.+.+..|..++.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55554444333322 234445555444
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=6e-13 Score=80.91 Aligned_cols=107 Identities=34% Similarity=0.464 Sum_probs=41.7
Q ss_pred cCCCCCccEEeccCcccceeCchhhc-cCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCC
Q psy8880 31 LAGLDKLTSLSCHHNQIDVLEDHSFR-ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109 (141)
Q Consensus 31 ~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L 109 (141)
+....+++.|++.++.|+.+. .+. .+.+++.|++++|.+.... .+..++.|+.|++++|.++.+.+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 455668899999999999875 344 4789999999999998773 57789999999999999999876433468999
Q ss_pred CEEEcCCCCccccC-CCCcCCCCceeEEEccCC
Q psy8880 110 QELRLDDNDISMVT-PDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 110 ~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n 141 (141)
+.|.+++|.+..+. -..++.+++|+.|++.+|
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 99999999997753 256778999999999987
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.37 E-value=1.1e-12 Score=66.65 Aligned_cols=59 Identities=24% Similarity=0.479 Sum_probs=31.8
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCc
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 70 (141)
+|+.+++++|++..++++.|..+++|+++++++|.++.+++..|..+++|+.+++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555555555555555555555555555543
No 16
>KOG0618|consensus
Probab=99.37 E-value=1e-13 Score=100.10 Aligned_cols=132 Identities=24% Similarity=0.335 Sum_probs=109.6
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
+..+.++++|+.|++++|+++.+++..+.++..|+.|++++|+++.++ ..+..++.|++|...+|++..++ .+.+++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~ 452 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLP 452 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcC
Confidence 456788999999999999999998889999999999999999999998 47788999999999999998874 577899
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEc
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 138 (141)
.|+.+|++.|+++..........++|++|++++|.-....-..+..++.+...++
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheec
Confidence 9999999999999876554455589999999999755444445555555544443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=6.6e-13 Score=88.26 Aligned_cols=136 Identities=20% Similarity=0.268 Sum_probs=62.5
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCC---ccEEeccCcccceeCc----hhhccC-CCCCEEECCCCccceec-
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDK---LTSLSCHHNQIDVLED----HSFRAL-STLSHLDLAHNRIVAVS- 75 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~---l~~l~l~~~~~~~~~~----~~~~~~-~~l~~l~l~~~~~~~~~- 75 (141)
..+..+++|+.+++++|.+....+..+..+.. ++.+++++|.+..... ..+..+ ++++.+++++|.+....
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 44555666666666666655333333333333 6666666665542111 122333 55566666665554211
Q ss_pred ---chhhcCCCCcCEEEcCCCcCcccC----hhhcCCCCCCCEEEcCCCCcccc----CCCCcCCCCceeEEEccC
Q psy8880 76 ---GASLAHLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDDNDISMV----TPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 76 ---~~~~~~~~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~ 140 (141)
...+..+..++++++++|.+.+.. ...+...++|+.|++++|.+++. ....+..+++|+.|++++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 122334445555555555554211 11123334555555555554322 112233444555555554
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.35 E-value=2.2e-12 Score=65.57 Aligned_cols=59 Identities=37% Similarity=0.591 Sum_probs=29.4
Q ss_pred CCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCC
Q psy8880 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118 (141)
Q Consensus 60 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 118 (141)
+|+.+++++|.+....++.|..+++|+++++++|.+..+++..+..+++|+.+++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554444444445555555555555555544444555555555554443
No 19
>KOG4237|consensus
Probab=99.33 E-value=4.5e-14 Score=93.78 Aligned_cols=108 Identities=31% Similarity=0.457 Sum_probs=59.8
Q ss_pred EEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCC-CccceecchhhcCCCCcCEEEcCCC
Q psy8880 15 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSHN 93 (141)
Q Consensus 15 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n 93 (141)
.+.+..|+|+.+++.+|..+++|+.++++.|+|+.+.+.+|.++..+..+.+.+ |.++....+.|.++..++.|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 455555555555555555555555555555555555555555555554444433 5555555555555555555555555
Q ss_pred cCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 94 FLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 94 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
++.-+..+.+..++++..|.+.+|.+..+
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhh
Confidence 55555555555555555555555544443
No 20
>KOG4237|consensus
Probab=99.33 E-value=5.4e-14 Score=93.44 Aligned_cols=124 Identities=24% Similarity=0.338 Sum_probs=105.6
Q ss_pred EEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC-C
Q psy8880 15 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-N 93 (141)
Q Consensus 15 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-n 93 (141)
.++.++-.+..++.+ -.+....+++..|+|+.+++.+|..+++|+.++++.|.++.+.|++|.++..+..+-+.+ |
T Consensus 50 ~VdCr~~GL~eVP~~---LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPAN---LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcccCccc---CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 344445555555332 134677889999999999999999999999999999999999999999999887776666 9
Q ss_pred cCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 94 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++++++.+.|+.+.+++.|.+..|.+..+..+.+..++++..|.+.+|
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence 999999999999999999999999999998899999999988877664
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=88.83 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=93.4
Q ss_pred CccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcC
Q psy8880 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115 (141)
Q Consensus 36 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~ 115 (141)
.+..|+++++.++...+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..+..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999998878889999999999999999988888889999999999999999999888889999999999999
Q ss_pred CCCccccCCCCcCCC-CceeEEEccCC
Q psy8880 116 DNDISMVTPDVIGDN-VTITTLTLSGE 141 (141)
Q Consensus 116 ~n~~~~~~~~~~~~~-~~L~~l~l~~n 141 (141)
+|.+++..|..++.. ..+..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 999999888877654 34556777665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.9e-12 Score=86.09 Aligned_cols=136 Identities=26% Similarity=0.340 Sum_probs=69.6
Q ss_pred hhcCC-CCccEEEccCCccccc----cccccCCCCCccEEeccCcccceeCc----hhhccCCCCCEEECCCCccceec-
Q psy8880 6 TVRRL-SSLKVLSIAHNQFSSV----RRGALAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVS- 75 (141)
Q Consensus 6 ~~~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~- 75 (141)
.+..+ ++|+.+++++|.+... ....+..+.+++++++++|.++.... ..+...++|+.+++++|.+....
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 34444 5666666666665521 12234445566666666666553211 12233456666666666654322
Q ss_pred ---chhhcCCCCcCEEEcCCCcCcccChhhcC-----CCCCCCEEEcCCCCccc----cCCCCcCCCCceeEEEccCC
Q psy8880 76 ---GASLAHLSNLTTLDLSHNFLRALTQDLIT-----PLKSLQELRLDDNDISM----VTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 76 ---~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-----~~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~l~l~~n 141 (141)
...+..+++|+++++++|.+.+.....+. ..+.|+.+++++|.+++ .....+..++.|+++++++|
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 12344456666667766666542221111 13566677776666651 11233444566666766654
No 23
>KOG1259|consensus
Probab=99.26 E-value=4.6e-13 Score=86.79 Aligned_cols=130 Identities=26% Similarity=0.368 Sum_probs=79.4
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+..|+.+++++|.++.+ .+...-.+.++.|+++.|++..+.. +..+++|+.||+++|.+.... ..-..+.++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV-GWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh-hhHhhhcCE
Confidence 344556677777777777765 3345556777777777777776653 555677777777777665542 222245556
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccC-CCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT-PDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n 141 (141)
+.|.+++|.+..+.. +.++-+|..|++.+|++.... ...++++|.|+.+.+.+|
T Consensus 355 KtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 355 KTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred eeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 666666666655543 345556666666666665432 345666666666655554
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=4.6e-10 Score=85.83 Aligned_cols=104 Identities=24% Similarity=0.291 Sum_probs=52.4
Q ss_pred CCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEE
Q psy8880 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~ 113 (141)
+.+|+.|++.++.+..++. .+..+++|+.++++++......| .+..+++|+.|++++|......+..++.+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccccccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 3456666666666555443 34455666666666544222222 244556666666665543332333355666666666
Q ss_pred cCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 114 LDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 114 l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
+++|......|..+ ++++|+.|++++
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 66543222223322 445555555544
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.14 E-value=6e-10 Score=85.22 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=31.8
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 69 (141)
|..+..+++|+.++++++..-...| .+..+++|+.|++.+|..-...+..+..+++|+.|+++++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 4445556666666666543222112 2445556666666555322222234455555555555554
No 26
>KOG0532|consensus
Probab=99.12 E-value=3.8e-12 Score=88.26 Aligned_cols=133 Identities=27% Similarity=0.382 Sum_probs=105.9
Q ss_pred chhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcC
Q psy8880 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 81 (141)
Q Consensus 2 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 81 (141)
.+|..+.++..|.+++|+.|+++..++. ++ ..-|+.+.+++|+++.++. .++..+++..++.+.|.+... |..++.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC-~lpLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~sl-psql~~ 187 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDG-LC-DLPLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSL-PSQLGY 187 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChh-hh-cCcceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhc-hHHhhh
Confidence 3677888889999999999999888553 33 3467888889999888876 556778888889998888777 456778
Q ss_pred CCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 82 ~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.+|+.+.+..|++..++++ +. .=.|..||++.|.++.+ |-.|.+++.|++|-+.+|
T Consensus 188 l~slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeec-chhhhhhhhheeeeeccC
Confidence 88888888888888888876 34 34688889998888887 777888888888888776
No 27
>KOG1259|consensus
Probab=99.11 E-value=1.2e-11 Score=80.41 Aligned_cols=115 Identities=30% Similarity=0.371 Sum_probs=98.2
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+.+++.-.|.++.|++++|++..+.. ++.+++|+.||+++|.++.+.. .-..+.+++.|.+++|.+.+. +.+..+
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KL 373 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKL 373 (490)
T ss_pred hhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhh
Confidence 45677888999999999999998744 8889999999999999987764 334678999999999998766 457788
Q ss_pred CCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCcccc
Q psy8880 83 SNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
.+|..|++.+|++..... ..++++|.|+++.+.+|++...
T Consensus 374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999999999987764 4589999999999999999876
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=2.9e-10 Score=82.99 Aligned_cols=122 Identities=27% Similarity=0.305 Sum_probs=70.6
Q ss_pred CCccEEEccCCcccccccc--c----------cCC----CCCccEEeccCcccceeCchh------------hc----cC
Q psy8880 11 SSLKVLSIAHNQFSSVRRG--A----------LAG----LDKLTSLSCHHNQIDVLEDHS------------FR----AL 58 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~--~----------~~~----~~~l~~l~l~~~~~~~~~~~~------------~~----~~ 58 (141)
++|+.|++++|++..++.. . +.. ..+|+.|++++|+++.++... +. ..
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~ 381 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP 381 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehhhccccccCcccc
Confidence 6677777777766554321 0 111 135777777777776654210 00 01
Q ss_pred CCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEc
Q psy8880 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138 (141)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 138 (141)
..|+.|++++|.+...+ . ..++|+.|++++|.+..++.. ..+|+.|++++|+++.+ |..+..+++|..+++
T Consensus 382 ~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccCCC-C---cccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCccccc-ChHHhhccCCCeEEC
Confidence 24555566655555432 1 124566666666666665431 23567777778877765 667888888888888
Q ss_pred cCC
Q psy8880 139 SGE 141 (141)
Q Consensus 139 ~~n 141 (141)
++|
T Consensus 453 s~N 455 (788)
T PRK15387 453 EGN 455 (788)
T ss_pred CCC
Confidence 887
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.06 E-value=1.4e-09 Score=79.55 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=30.6
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCcc
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 71 (141)
+|+.|++.+|+++.++. .+++|+.|++++|+++.++. . .++|+.|++..|.+
T Consensus 223 ~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~-l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV-L---PPGLLELSIFSNPL 274 (788)
T ss_pred CCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC-c---ccccceeeccCCch
Confidence 56777777777776532 24677777777777776543 1 23444444444443
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=1e-09 Score=80.23 Aligned_cols=100 Identities=25% Similarity=0.431 Sum_probs=55.4
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
+.++.|++++|++..++... ..+|+.|++++|.++.++.. + ...++.|++++|.+..++ ..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N~L~~LP-~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL---QGNIKTLYANSNQLTSIPAT-L--PDTIQEMELSINRITELP-ERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcCChhh---ccCCCEEECCCCccccCChh-h--hccccEEECcCCccCcCC-hhHh--CCCCEEEC
Confidence 35667777777777654322 24677777777776655432 2 135666666666665442 2221 35666666
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
++|.+..++.. +. ++|+.|++++|.++.+
T Consensus 270 s~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 270 FHNKISCLPEN-LP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred cCCccCccccc-cC--CCCcEEECCCCccccC
Confidence 66666655432 11 3566666666655543
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=9.1e-10 Score=80.50 Aligned_cols=118 Identities=26% Similarity=0.387 Sum_probs=54.8
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhh------------
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL------------ 79 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~------------ 79 (141)
+|+.|++++|.+..++. .+ ..+|+.|++++|+++.++. .+ .+.|+.|++++|.+...+....
T Consensus 242 ~L~~L~Ls~N~L~~LP~-~l--~s~L~~L~Ls~N~L~~LP~-~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 242 TIQEMELSINRITELPE-RL--PSALQSLDLFHNKISCLPE-NL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred cccEEECcCCccCcCCh-hH--hCCCCEEECcCCccCcccc-cc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 45666666666554422 12 1345555555555554432 11 1345555555555443311000
Q ss_pred ------cCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 80 ------AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 80 ------~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
...++|+.|++++|.++.++.. + .++|+.|++++|.++.+ |..+ .++|+.|++++|
T Consensus 316 Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 316 LTALPETLPPGLKTLEAGENALTSLPAS-L--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRN 377 (754)
T ss_pred cccCCccccccceeccccCCccccCChh-h--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCC
Confidence 0113455555555555554432 1 14566666666666543 3222 135566666554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.2e-09 Score=75.01 Aligned_cols=130 Identities=35% Similarity=0.539 Sum_probs=70.5
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.++.+++|+.|++.+|++..+++ .....+.++.+++++|++..++.. ......++.+.+++|..... +..+..+..+
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l 234 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNL 234 (394)
T ss_pred hhhccccccccccCCchhhhhhh-hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccc
Confidence 34445555555555555554432 111344555555555555544431 11222345555555532222 2233444455
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
..+.+.+|.+...+ ..++.++.++.+++++|.++.+.. ++....++.+++++|
T Consensus 235 ~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 235 SGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred cccccCCceeeecc-chhccccccceecccccccccccc--ccccCccCEEeccCc
Confidence 55555555554432 335677788999999998888744 778888888888764
No 33
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.86 E-value=2.6e-08 Score=57.87 Aligned_cols=124 Identities=13% Similarity=0.341 Sum_probs=76.6
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
..|.++.+|+.+.+.. .+..+....|..+.+++.+.++.+ +..+....|..+..++.+.+.. .+.......|..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3688899999999885 677787888999999999999885 8888888898888899999976 555665667888999
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCcee
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTIT 134 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 134 (141)
++.+.+..+ +..+....+..+ .++.+.+.. .+..+....|.+|++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 999999775 777777778887 999998875 56666677888887763
No 34
>KOG3207|consensus
Probab=98.85 E-value=9.1e-10 Score=74.48 Aligned_cols=136 Identities=25% Similarity=0.314 Sum_probs=71.3
Q ss_pred hhcCCCCccEEEccCCcccccccc-ccCCCCCccEEeccCcccceeCch-hhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
-..++++|+.|+++.|++...... .-..+++++.|.++.|+++.-... -...+|++..|++.+|............+.
T Consensus 167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ 246 (505)
T ss_pred HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence 445677777777777776543221 222456777777777766632211 222456666666666631111111222344
Q ss_pred CcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccC-CCC-----cCCCCceeEEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVT-PDV-----IGDNVTITTLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~-~~~-----~~~~~~L~~l~l~~n 141 (141)
.|+.|++++|.+-+... ...+.++.|+.++++.+.++.+. |++ ....++|++|++..|
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 56666676666555442 22455666666666666555442 221 234456666665544
No 35
>KOG1859|consensus
Probab=98.84 E-value=1.2e-11 Score=88.26 Aligned_cols=123 Identities=31% Similarity=0.353 Sum_probs=67.4
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
|.+.++++|++..+ ...+.-++.+++|++++|+++... .+..++.|++||++.|.+...+--....+. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 44445555555544 334555566666666666666554 455566666666666666554322222233 66666666
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCccccC-CCCcCCCCceeEEEccCC
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISMVT-PDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~n 141 (141)
|.++.+.. +.++.+|+.||+++|-+.+.. -..++.+..|+.|++.||
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 66666544 346666666666666554431 122344455555555554
No 36
>KOG1909|consensus
Probab=98.84 E-value=1.1e-09 Score=72.03 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=89.6
Q ss_pred hhhhhcCCCCccEEEccCCcccccccc----ccCCCCCccEEeccCcccceeCchhh-------------ccCCCCCEEE
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRG----ALAGLDKLTSLSCHHNQIDVLEDHSF-------------RALSTLSHLD 65 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~-------------~~~~~l~~l~ 65 (141)
+.+.+..+++|+.++|++|.+....+. -+..+..|++|++.+|++.......+ ..-+.|+++.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 345677888999999999988765443 34456789999999998775544332 2236788888
Q ss_pred CCCCccceecc----hhhcCCCCcCEEEcCCCcCcccC----hhhcCCCCCCCEEEcCCCCcccc----CCCCcCCCCce
Q psy8880 66 LAHNRIVAVSG----ASLAHLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDDNDISMV----TPDVIGDNVTI 133 (141)
Q Consensus 66 l~~~~~~~~~~----~~~~~~~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L 133 (141)
.++|++.+... ..++..+.|+.+.+..|.+..-. ...+.++++|+.|++++|.++.. ....+..++.|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 88887765432 34555566777777776655322 23356677777777777766532 23445556666
Q ss_pred eEEEccC
Q psy8880 134 TTLTLSG 140 (141)
Q Consensus 134 ~~l~l~~ 140 (141)
+++++++
T Consensus 244 ~El~l~d 250 (382)
T KOG1909|consen 244 RELNLGD 250 (382)
T ss_pred eeecccc
Confidence 6666654
No 37
>KOG1644|consensus
Probab=98.83 E-value=1.1e-08 Score=62.94 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=77.7
Q ss_pred cEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCC
Q psy8880 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93 (141)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 93 (141)
+.+++++.++..... .-........+|++.|.+..+. .|..++.|.+|.+..|.++.+.|.--.-++++..|.+.+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 455666665544322 1112345666777777766554 4666777778888888777776654444667777777777
Q ss_pred cCcccCh-hhcCCCCCCCEEEcCCCCccccC---CCCcCCCCceeEEEcc
Q psy8880 94 FLRALTQ-DLITPLKSLQELRLDDNDISMVT---PDVIGDNVTITTLTLS 139 (141)
Q Consensus 94 ~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~L~~l~l~ 139 (141)
++..+.. .-+..+++|+.|.+-+|+++.-. .-.+..+|+|+.||++
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 7766543 33567777888887777776531 2345567777777765
No 38
>KOG0532|consensus
Probab=98.83 E-value=2.9e-11 Score=84.01 Aligned_cols=132 Identities=25% Similarity=0.360 Sum_probs=100.7
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|+.+..+..|+.+.+..|.+... +...+.+..+.+++++.|+++.++. .++.+ .|+.+-+++|++... |..++..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l-pLkvli~sNNkl~~l-p~~ig~~ 165 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLPD-GLCDL-PLKVLIVSNNKLTSL-PEEIGLL 165 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCCh-hhhcC-cceeEEEecCccccC-Ccccccc
Confidence 445555555666666666666555 4467777888899999999988876 44444 488888899988777 4556678
Q ss_pred CCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
..|.+++.+.|.+..+++. ++.+.+|+.+.+..|.+... |.++..++ |..||++.|
T Consensus 166 ~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDFSCN 221 (722)
T ss_pred hhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeecccC
Confidence 8899999999999888765 78889999999999998887 56677665 889999987
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=4.8e-09 Score=72.01 Aligned_cols=129 Identities=32% Similarity=0.524 Sum_probs=68.2
Q ss_pred CCCCccEEEccCCccccccccccCCCC-CccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLD-KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 87 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 87 (141)
.+..++.+++.++.+...++ ...... +++.++++.|++..++. ....++.++.|+++.|++....+. ....+.++.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhhh-hhhccccccccccCCchhhhhhhh-hhhhhhhhh
Confidence 33456666666666666544 223332 66666666666665531 344556666666666666555321 224555666
Q ss_pred EEcCCCcCcccChhh----------------------cCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 88 LDLSHNFLRALTQDL----------------------ITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 88 l~l~~n~l~~~~~~~----------------------~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+++++|.+..++... +..+.++..+.+..|++... +..++.++.++.+++++|
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNN 265 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceeccccc
Confidence 666666666555431 23333444444444444332 345556666666666654
No 40
>KOG4658|consensus
Probab=98.74 E-value=1.1e-08 Score=76.23 Aligned_cols=126 Identities=25% Similarity=0.314 Sum_probs=94.9
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcc--cceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEE
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ--IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l 88 (141)
...+.+.+.++.+...... ..++.+++|-+..+. +...+...|..++.|++||+++|.-....|+.++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4556666666666554321 234578888888885 666676678889999999999877666678888889999999
Q ss_pred EcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEcc
Q psy8880 89 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139 (141)
Q Consensus 89 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 139 (141)
++.+..+..+|.. ++.+.+|.+|++..+......+.....+.+|+++.+.
T Consensus 601 ~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 601 DLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 9999998888766 7888899999988776555556666778888887764
No 41
>KOG3207|consensus
Probab=98.70 E-value=1.9e-09 Score=73.01 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=66.7
Q ss_pred hcCCCCccEEEccCCccccccc-cccCCCCCccEEeccCcccceeCc--hhhccCCCCCEEECCCCccceecchhh-cCC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHLDLAHNRIVAVSGASL-AHL 82 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~ 82 (141)
-+++.+|+.+.+.++.+..... .....|++++.|+++.|-+....+ .....+|+|+.|+++.|.+..+..+.. ..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456677777788777776543 344567788888888776654432 122346778888888877765443221 235
Q ss_pred CCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCC
Q psy8880 83 SNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDN 117 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n 117 (141)
++++.|.+++|.+++-.- .....+|+|..|.+..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 667777777777664321 22334555555555555
No 42
>KOG4579|consensus
Probab=98.66 E-value=8e-10 Score=64.13 Aligned_cols=87 Identities=28% Similarity=0.310 Sum_probs=47.6
Q ss_pred CCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEE
Q psy8880 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~ 113 (141)
..++..+++++|.++..++..-..++..+.+++..|.+.+.+ ..+..++.|+.++++.|.+...+... ..+.++..|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhcccccCccccchHHH-HHHHhHHHhc
Confidence 345555566666666555533333455566666666665553 23555666666666666665555442 2355555666
Q ss_pred cCCCCcccc
Q psy8880 114 LDDNDISMV 122 (141)
Q Consensus 114 l~~n~~~~~ 122 (141)
..+|.+..+
T Consensus 130 s~~na~~ei 138 (177)
T KOG4579|consen 130 SPENARAEI 138 (177)
T ss_pred CCCCccccC
Confidence 655554443
No 43
>KOG1644|consensus
Probab=98.64 E-value=9.1e-08 Score=59.02 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=83.1
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc-hhhcCCCCcCEEEc
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDL 90 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l 90 (141)
....+++++|.+.... .|..++.|.+|.+.+|.|+.+.+..-..++.++.|.+.+|.+..+.. +.+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4557888999887753 47889999999999999999998655567889999999999876643 45677899999999
Q ss_pred CCCcCcccC---hhhcCCCCCCCEEEcCC
Q psy8880 91 SHNFLRALT---QDLITPLKSLQELRLDD 116 (141)
Q Consensus 91 ~~n~l~~~~---~~~~~~~~~L~~l~l~~ 116 (141)
-+|.++... ...+..+++|++||.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 999877543 24467889999999875
No 44
>KOG1859|consensus
Probab=98.64 E-value=2.8e-10 Score=81.48 Aligned_cols=114 Identities=28% Similarity=0.383 Sum_probs=91.7
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+..++.-++.++.|++++|+++... .+..+++|++||++.|.+..++.-.-.++. |+.|.+.+|.+... ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 4567788899999999999999874 688899999999999999888753333343 99999999988776 357788
Q ss_pred CCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccc
Q psy8880 83 SNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 121 (141)
.+|+.|+++.|-+.+... ..+..+..|+.|.+.+|++..
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999999999998776543 234566788899999998865
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.56 E-value=1.6e-07 Score=44.13 Aligned_cols=38 Identities=39% Similarity=0.593 Sum_probs=24.9
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
+|++|++++|.++.+++. ++++++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence 567777777777776553 66777777777777777654
No 46
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.55 E-value=8.6e-07 Score=51.46 Aligned_cols=109 Identities=11% Similarity=0.343 Sum_probs=73.0
Q ss_pred cccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCC
Q psy8880 27 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 106 (141)
Q Consensus 27 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~ 106 (141)
....|..+.+++.+.+.. .+..+....|..+++++.+.+..+ +.......+..++.++.+.+.. .+..+....+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 455788889999999985 688888889999999999999875 7777667888888899999976 6677777778889
Q ss_pred CCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 107 KSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 107 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++++.+.+..+ +..+....+.++ .++.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 99999999775 677767788888 788877653
No 47
>KOG0531|consensus
Probab=98.54 E-value=1.2e-08 Score=70.46 Aligned_cols=109 Identities=33% Similarity=0.468 Sum_probs=51.6
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+.+++.+++.+|++..... .+..+++|++++++.|.|+.+.+ +..++.|+.|++.+|.+..+. .+..++.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS--GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc--CCccchhhh
Confidence 3344455555555555554422 13445555555555555554432 233444555555555554442 233344555
Q ss_pred EEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccc
Q psy8880 87 TLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 87 ~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 121 (141)
.+++++|.+..... . ...+.+++.+.+.+|.+..
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 55555555554444 1 2344555555555554443
No 48
>KOG0531|consensus
Probab=98.53 E-value=1.3e-08 Score=70.37 Aligned_cols=126 Identities=30% Similarity=0.480 Sum_probs=93.8
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l 88 (141)
.+..++.++++.+.+... ...+..+.++..+++..|+|..+.. .+..+++|+++++++|.+..+. .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 455666667777777763 2346778899999999999887764 2567889999999999988774 35566778999
Q ss_pred EcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCC-CCcCCCCceeEEEccCC
Q psy8880 89 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP-DVIGDNVTITTLTLSGE 141 (141)
Q Consensus 89 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n 141 (141)
++.+|.+..+.. +..+..|+.+++++|.++.+.+ . ...+.+++.+++.+|
T Consensus 146 ~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 146 NLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred eeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence 999999888865 3458889999999998888744 2 456666666666554
No 49
>KOG4579|consensus
Probab=98.51 E-value=9.1e-09 Score=59.83 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=88.4
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+....+|..+++++|.+..+++.--..++.++++++.+|.++.++. .+..++.|+.+++..|++... |..+..+.++.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-ELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-HHhhhHHhhhcccccCccccc-hHHHHHHHhHH
Confidence 4455678889999999999877655567899999999999999987 489999999999999999876 45555688899
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 124 (141)
.|+..+|.+..++.+.+.. ...-...+.++++.+..+
T Consensus 127 ~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETK 163 (177)
T ss_pred HhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCc
Confidence 9999999999888774432 223333445555655444
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.45 E-value=4.3e-07 Score=42.70 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=21.2
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCccccee
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 50 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 50 (141)
+|++|++++|+++.+++ .+..+++|+.+++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 45666666666665533 355666666666666665544
No 51
>KOG1909|consensus
Probab=98.44 E-value=1.1e-07 Score=63.05 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=60.4
Q ss_pred CCCccEEEccCCcccccc----ccccCCCCCccEEeccCcccceeC----chhhccCCCCCEEECCCCccceec----ch
Q psy8880 10 LSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVS----GA 77 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~ 77 (141)
-+.|+++.+..|++.... ...|...+.++.+.++.|.|.... ...|..+++|+.||+.+|.++.-. ..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 344555555555443221 223444455555555555443221 123444555555555555554321 12
Q ss_pred hhcCCCCcCEEEcCCCcCcccChhhc-----CCCCCCCEEEcCCCCcccc----CCCCcCCCCceeEEEccCC
Q psy8880 78 SLAHLSNLTTLDLSHNFLRALTQDLI-----TPLKSLQELRLDDNDISMV----TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 78 ~~~~~~~L~~l~l~~n~l~~~~~~~~-----~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n 141 (141)
.+..+++|+.++++.+.+..-....+ ...++|+.+.+.+|.++.- ....+...+.|+.|++++|
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 34444555555555555544332211 2345566666666655431 1222333455555555554
No 52
>KOG3665|consensus
Probab=98.41 E-value=2.7e-07 Score=67.36 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=80.7
Q ss_pred CccEEEccCCcc--ccccccccCCCCCccEEeccCcccceeC-chhhccCCCCCEEECCCCccceecchhhcCCCCcCEE
Q psy8880 12 SLKVLSIAHNQF--SSVRRGALAGLDKLTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88 (141)
Q Consensus 12 ~L~~l~l~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l 88 (141)
+|++|++++... .+++...-..+|.|++|.+.+-.+.... .....++|+|..||+++.++... ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 677777777532 2333333445788888888876654332 12334578888888888888766 456777888887
Q ss_pred EcCCCcCcccC-hhhcCCCCCCCEEEcCCCCcccc------CCCCcCCCCceeEEEccCC
Q psy8880 89 DLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV------TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 89 ~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~------~~~~~~~~~~L~~l~l~~n 141 (141)
.+.+=.+.... -..+..+++|+.||++....... -.+.-..+|.|+.||.+++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 77765555422 23366788888888876543221 1133345778888887763
No 53
>KOG4658|consensus
Probab=98.38 E-value=2.5e-07 Score=69.16 Aligned_cols=109 Identities=23% Similarity=0.220 Sum_probs=78.9
Q ss_pred CCCCccEEEccCCc--cccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 9 RLSSLKVLSIAHNQ--FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 9 ~l~~L~~l~l~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
.++.|++|-+..+. +.....+-|..++.|+.||+++|.=-...|..++.+-+|++|++++..+... |..+..+..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhhh
Confidence 34567888888775 5555555677888888888887643333344777788888888888888765 66788888888
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDND 118 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 118 (141)
+|++..+......+.....+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 88888776555556656678888888876543
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=2.9e-07 Score=59.53 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=92.6
Q ss_pred hhhhcCCCCccEEEccCCccccccccc----cCCCCCccEEeccCcccceeCchhhc-------------cCCCCCEEEC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGA----LAGLDKLTSLSCHHNQIDVLEDHSFR-------------ALSTLSHLDL 66 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~~~l~~l~l~~~~~~~~~~~~~~-------------~~~~l~~l~l 66 (141)
...+.+||+++.+++++|.+..-.++. +.....+.+|.+.+|++.......++ .-|.|++...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 346778999999999999987665543 44557899999999988766544333 3478999999
Q ss_pred CCCccceecch----hhcCCCCcCEEEcCCCcCcccCh-----hhcCCCCCCCEEEcCCCCcccc----CCCCcCCCCce
Q psy8880 67 AHNRIVAVSGA----SLAHLSNLTTLDLSHNFLRALTQ-----DLITPLKSLQELRLDDNDISMV----TPDVIGDNVTI 133 (141)
Q Consensus 67 ~~~~~~~~~~~----~~~~~~~L~~l~l~~n~l~~~~~-----~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L 133 (141)
++|++...+.. .+..-..++.+-+..|.+..-.. ..+..+.+|+.|++++|.++.. ....+..|+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 99988766432 12222457777777776654321 1134678889999998877643 23445566666
Q ss_pred eEEEccC
Q psy8880 134 TTLTLSG 140 (141)
Q Consensus 134 ~~l~l~~ 140 (141)
++|.+.+
T Consensus 245 rEL~lnD 251 (388)
T COG5238 245 RELRLND 251 (388)
T ss_pred hhccccc
Confidence 7666543
No 55
>KOG2982|consensus
Probab=98.25 E-value=1.3e-06 Score=57.30 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=41.3
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCccccee-CchhhccCCCCCEEECCCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL-EDHSFRALSTLSHLDLAHN 69 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~ 69 (141)
+.+.+.++|+|++|++++|++.........+..+++.+-+.+..+.-. ....+..+|.++.++++.|
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 456678889999999999987764332224556777777766654311 1223344566666666666
No 56
>KOG3665|consensus
Probab=98.02 E-value=8.5e-06 Score=59.81 Aligned_cols=112 Identities=25% Similarity=0.226 Sum_probs=80.0
Q ss_pred cCCCCccEEEccCCccccc-cccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCcccee-cchhhcCCCCc
Q psy8880 8 RRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNL 85 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L 85 (141)
.-+|+|++|.+++-.+... .......+++|..||+++++++.+ ..++.+++|+.|.+.+-.+... .-..+-++++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 3578999999988766432 223456789999999999999877 3567788888888776555432 12345678999
Q ss_pred CEEEcCCCcCcccC------hhhcCCCCCCCEEEcCCCCccc
Q psy8880 86 TTLDLSHNFLRALT------QDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 86 ~~l~l~~n~l~~~~------~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
+.||++.......+ -+.-..+|.|+.||.+++.+.+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99999986554433 1223457899999999887654
No 57
>KOG2120|consensus
Probab=97.96 E-value=1.2e-06 Score=57.49 Aligned_cols=136 Identities=20% Similarity=0.145 Sum_probs=72.6
Q ss_pred hhhcCCCCccEEEccCCc-cccccc-cccCCCCCccEEeccCcccceeCc-hhhcc-CCCCCEEECCCCccceec--chh
Q psy8880 5 CTVRRLSSLKVLSIAHNQ-FSSVRR-GALAGLDKLTSLSCHHNQIDVLED-HSFRA-LSTLSHLDLAHNRIVAVS--GAS 78 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~-~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~-~~~l~~l~l~~~~~~~~~--~~~ 78 (141)
.+++.-.+|+.++++.|+ ++.... -.+..|+.|..|+++||.+..... ..+.. -+.+..|+++++.-.-+. -+.
T Consensus 228 ~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 228 NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 345555566666666553 222111 134455666666666665443211 11111 135556666655432211 112
Q ss_pred -hcCCCCcCEEEcCCCc-CcccChhhcCCCCCCCEEEcCCCCcccc-CCCCcCCCCceeEEEccC
Q psy8880 79 -LAHLSNLTTLDLSHNF-LRALTQDLITPLKSLQELRLDDNDISMV-TPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 79 -~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~ 140 (141)
...++.+.+|+++++. ++...-..+.+++.|+++.++.+..-.. ..-.++..|+|.+|++.|
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 2357788888888763 3433334567788888888877743211 123567788888888754
No 58
>KOG2739|consensus
Probab=97.94 E-value=3.1e-06 Score=54.16 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=65.5
Q ss_pred CCCCccEEeccCcccceeCchhhccCCCCCEEECCCC--ccceecchhhcCCCCcCEEEcCCCcCcccCh-hhcCCCCCC
Q psy8880 33 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN--RIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSL 109 (141)
Q Consensus 33 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L 109 (141)
.+..++.+.+.+..++... .|..+++|+.|.++.| .+..-..--...+++|+++++++|.+..+.. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3556677777777776654 4667788899999888 4433322233355889999999988775322 224566778
Q ss_pred CEEEcCCCCccccC---CCCcCCCCceeEEE
Q psy8880 110 QELRLDDNDISMVT---PDVIGDNVTITTLT 137 (141)
Q Consensus 110 ~~l~l~~n~~~~~~---~~~~~~~~~L~~l~ 137 (141)
..|++.+|..+... ...+.-+++|.++|
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 88888887766531 23344455655554
No 59
>KOG2123|consensus
Probab=97.94 E-value=1.7e-07 Score=60.78 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=78.7
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc-hhhcCCCCcCE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTT 87 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~ 87 (141)
.+.+++.|++.+|.+.++.- ...|+.|+.|.++-|+|+.+.+ |..|++|+.|.+..|.+.++.. .-+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35577889999999988743 5578999999999999998864 7788999999999999877643 45678899999
Q ss_pred EEcCCCcCcccCh-----hhcCCCCCCCEEE
Q psy8880 88 LDLSHNFLRALTQ-----DLITPLKSLQELR 113 (141)
Q Consensus 88 l~l~~n~l~~~~~-----~~~~~~~~L~~l~ 113 (141)
|.+..|...+-.+ ..+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999987665433 2345577777776
No 60
>KOG2982|consensus
Probab=97.85 E-value=5.7e-06 Score=54.39 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=43.8
Q ss_pred CCCccEEeccCcccceeCc--hhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccCh-hhcCCCCCCC
Q psy8880 34 LDKLTSLSCHHNQIDVLED--HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQ 110 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~ 110 (141)
+..++.+|+.+|.|+.... .....+|.+++|+++.|++......-.....+++.+.+.+..+.+... ..+..+|+++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3456666666666654432 123345666666666666654432211244556666666665554332 2234555556
Q ss_pred EEEcCCC
Q psy8880 111 ELRLDDN 117 (141)
Q Consensus 111 ~l~l~~n 117 (141)
.++++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6655555
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00033 Score=48.49 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=36.2
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCc-ccceeCchhhccCCCCCEEECCCC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFRALSTLSHLDLAHN 69 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~ 69 (141)
+..+.+++.|++++|.+..++. -..+|+.|.+.+| .++.++ ..+ ...|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCc
Confidence 5567888999999998877741 2346888888764 333333 222 246777777766
No 62
>KOG2739|consensus
Probab=97.44 E-value=7.9e-05 Score=47.90 Aligned_cols=105 Identities=25% Similarity=0.274 Sum_probs=67.1
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCc--ccceeCchhhccCCCCCEEECCCCccceec-chhhcCCCCc
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN--QIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNL 85 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L 85 (141)
.+..|+.+.+.++.++... .+..+++|+.|.++.| ++..-.......+|+++++.+++|++.... -.....+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445556666666665543 3566889999999988 554333334445699999999999886532 1234456667
Q ss_pred CEEEcCCCcCcccC---hhhcCCCCCCCEEEcC
Q psy8880 86 TTLDLSHNFLRALT---QDLITPLKSLQELRLD 115 (141)
Q Consensus 86 ~~l~l~~n~l~~~~---~~~~~~~~~L~~l~l~ 115 (141)
..|++..+...... ...+.-+++|.+++-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 78888877655432 2345566778777654
No 63
>KOG2123|consensus
Probab=97.44 E-value=1.9e-06 Score=56.04 Aligned_cols=100 Identities=24% Similarity=0.360 Sum_probs=75.6
Q ss_pred CCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccCh-hhcCCCCCCCEE
Q psy8880 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQEL 112 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l 112 (141)
+.+++.|+..+|.++.+.. ...++.|+++.++-|.++... .+..|++|+.+-|..|.+.++.. .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4567788888888877642 346899999999999998774 47889999999999999988765 336789999999
Q ss_pred EcCCCCccccCC-----CCcCCCCceeEEE
Q psy8880 113 RLDDNDISMVTP-----DVIGDNVTITTLT 137 (141)
Q Consensus 113 ~l~~n~~~~~~~-----~~~~~~~~L~~l~ 137 (141)
.+..|+..+-.+ .+++.+|.|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998765422 2334455554443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=0.00022 Score=46.64 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=56.8
Q ss_pred ccCCCCCccEEeccCcccceeCch----hhccCCCCCEEECCCCccceecchhhc-------------CCCCcCEEEcCC
Q psy8880 30 ALAGLDKLTSLSCHHNQIDVLEDH----SFRALSTLSHLDLAHNRIVAVSGASLA-------------HLSNLTTLDLSH 92 (141)
Q Consensus 30 ~~~~~~~l~~l~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~~-------------~~~~L~~l~l~~ 92 (141)
++.+|++++.++++.|.+....+. .+..-..+.+|.+.+|.+..+...-++ .-+.|+....+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344566666666666655443332 223345566666666655433211111 224566666666
Q ss_pred CcCcccChhhc----CCCCCCCEEEcCCCCcccc-----CCCCcCCCCceeEEEccCC
Q psy8880 93 NFLRALTQDLI----TPLKSLQELRLDDNDISMV-----TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 93 n~l~~~~~~~~----~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~~L~~l~l~~n 141 (141)
|++...+...+ ..-..|..+.+..|.+.-- .-..+..+.+|+.||+++|
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 66555443211 1223566666666554321 1122345677888888876
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.85 E-value=0.0046 Score=43.06 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=42.5
Q ss_pred cCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCC-cCcccC
Q psy8880 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN-FLRALT 99 (141)
Q Consensus 31 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n-~l~~~~ 99 (141)
+..+.++..|++++|.++.++ .+ ..+|+.|.++++.-....|+.+ .++|++|.+.+| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 334688999999999888876 22 2469999998754333334433 357888888887 554443
No 66
>KOG2120|consensus
Probab=96.80 E-value=0.00014 Score=48.15 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=72.4
Q ss_pred hhcCCCCccEEEccCCccccccccccC-C-CCCccEEeccCcccc--eeCc-hhhccCCCCCEEECCCCccce-ecchhh
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALA-G-LDKLTSLSCHHNQID--VLED-HSFRALSTLSHLDLAHNRIVA-VSGASL 79 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~-~-~~~l~~l~l~~~~~~--~~~~-~~~~~~~~l~~l~l~~~~~~~-~~~~~~ 79 (141)
-|.+|..|..|+++.|.+..-...... . -+++..|+++++.-. .-.. .....+|++..||++++-.-. .....+
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 477899999999999976532122111 1 256888888877322 1111 133468999999999876432 222456
Q ss_pred cCCCCcCEEEcCCCcCcccChh---hcCCCCCCCEEEcCCC
Q psy8880 80 AHLSNLTTLDLSHNFLRALTQD---LITPLKSLQELRLDDN 117 (141)
Q Consensus 80 ~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~L~~l~l~~n 117 (141)
.+++.|+++.++++. +++|. .+...++|.+|++.++
T Consensus 335 ~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred Hhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 678889999998763 44443 3567889999998765
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.71 E-value=0.0013 Score=25.88 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=4.3
Q ss_pred cEEeccCcccc
Q psy8880 38 TSLSCHHNQID 48 (141)
Q Consensus 38 ~~l~l~~~~~~ 48 (141)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33344444333
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.73 E-value=0.0097 Score=21.73 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.0
Q ss_pred CEEEcCCCC
Q psy8880 110 QELRLDDND 118 (141)
Q Consensus 110 ~~l~l~~n~ 118 (141)
+.|++++|.
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.70 E-value=0.015 Score=23.65 Aligned_cols=18 Identities=50% Similarity=0.625 Sum_probs=8.5
Q ss_pred CcCEEEcCCCcCcccChh
Q psy8880 84 NLTTLDLSHNFLRALTQD 101 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~ 101 (141)
+|+.|++++|.+..+++.
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444555544444443
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.70 E-value=0.015 Score=23.65 Aligned_cols=18 Identities=50% Similarity=0.625 Sum_probs=8.5
Q ss_pred CcCEEEcCCCcCcccChh
Q psy8880 84 NLTTLDLSHNFLRALTQD 101 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~ 101 (141)
+|+.|++++|.+..+++.
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 344444555544444443
No 71
>KOG0473|consensus
Probab=94.52 E-value=0.00027 Score=45.24 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred ccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCC
Q psy8880 30 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109 (141)
Q Consensus 30 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L 109 (141)
.+..+.....+|++.+++-.+.. .|.-++.+..++++.|.+... |..+.+...++++++..|..+..|.+ ++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPKS-QKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCcc-ccccCCc
Confidence 34455666677777766554443 444455666667776666443 45555555566666666666666544 5667777
Q ss_pred CEEEcCCCCccc
Q psy8880 110 QELRLDDNDISM 121 (141)
Q Consensus 110 ~~l~l~~n~~~~ 121 (141)
+++++-.|.+..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 777777766543
No 72
>KOG3864|consensus
Probab=94.49 E-value=0.0072 Score=37.92 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCccEEeccCcccceeCchhhccCCCCCEEECCCCccc-eecchhhc-CCCCcCEEEcCCC-cCcccChhhcCCCCCCCE
Q psy8880 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-AVSGASLA-HLSNLTTLDLSHN-FLRALTQDLITPLKSLQE 111 (141)
Q Consensus 35 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~-~~~~L~~l~l~~n-~l~~~~~~~~~~~~~L~~ 111 (141)
-.++.++-+++.|....-..+.+++.++.+.+..+.-. +..-+.+. ..++|+.|++++| .+++..-..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35677777777777666666677777777776655432 11112222 2467888888866 456655555677777777
Q ss_pred EEcCC
Q psy8880 112 LRLDD 116 (141)
Q Consensus 112 l~l~~ 116 (141)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 73
>KOG3864|consensus
Probab=94.27 E-value=0.0064 Score=38.13 Aligned_cols=82 Identities=22% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCccc-ceeCchhhc-cCCCCCEEECCCCc-cceecchhhcCCCCcCE
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFR-ALSTLSHLDLAHNR-IVAVSGASLAHLSNLTT 87 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~ 87 (141)
..++.++-+++.+....-+-+..++.++.+.+.+|.- ...-...+. ..++|+.|++++|. +++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3455666666666554445566677777777776632 111111222 35789999998765 55544455667777877
Q ss_pred EEcCC
Q psy8880 88 LDLSH 92 (141)
Q Consensus 88 l~l~~ 92 (141)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.14 E-value=0.024 Score=22.51 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=6.4
Q ss_pred CCccEEEccCCcccc
Q psy8880 11 SSLKVLSIAHNQFSS 25 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~ 25 (141)
++|+.|++++|.++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 75
>KOG1947|consensus
Probab=92.13 E-value=0.095 Score=37.04 Aligned_cols=59 Identities=31% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCCCEEECCCCc-cceecchhhc-CCCCcCEEEcCCCc-CcccCh-hhcCCCCCCCEEEcCCC
Q psy8880 59 STLSHLDLAHNR-IVAVSGASLA-HLSNLTTLDLSHNF-LRALTQ-DLITPLKSLQELRLDDN 117 (141)
Q Consensus 59 ~~l~~l~l~~~~-~~~~~~~~~~-~~~~L~~l~l~~n~-l~~~~~-~~~~~~~~L~~l~l~~n 117 (141)
+.++.+++++.. +++..-..+. .++.|+.+.+..+. +++..- .....++.|+.++++.+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 445555554444 3222212222 14455555544443 222221 11223444555555544
No 76
>KOG0473|consensus
Probab=91.16 E-value=0.0011 Score=42.55 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=37.1
Q ss_pred CCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEE
Q psy8880 58 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLT 137 (141)
Q Consensus 58 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~ 137 (141)
....+.+|++.|++.... ..++.++.+..++++.|.+...+.+ +++...++.+++..|..+.. |..++..+.++.++
T Consensus 41 ~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhC-CccccccCCcchhh
Confidence 344555555555543331 2333444455555555555554443 34444444445444443332 45555555555444
Q ss_pred cc
Q psy8880 138 LS 139 (141)
Q Consensus 138 l~ 139 (141)
+.
T Consensus 118 ~k 119 (326)
T KOG0473|consen 118 QK 119 (326)
T ss_pred hc
Confidence 43
No 77
>KOG4341|consensus
Probab=90.13 E-value=0.13 Score=36.01 Aligned_cols=130 Identities=20% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCCCccEEEccCCcc-ccccccccC-CCCCccEEeccCcc-cceeCchhh-ccCCCCCEEECCCCccceec--chhhcCC
Q psy8880 9 RLSSLKVLSIAHNQF-SSVRRGALA-GLDKLTSLSCHHNQ-IDVLEDHSF-RALSTLSHLDLAHNRIVAVS--GASLAHL 82 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~-~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~--~~~~~~~ 82 (141)
++..|+.+..+.+.- ++..-..++ ...+|+.+.+..++ ++...-..+ .+++.|+.+++.+....... .+.-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 344555555555432 221112222 34566666666654 222111112 23556666666555432221 1112245
Q ss_pred CCcCEEEcCCCcCcccC-----hhhcCCCCCCCEEEcCCCCc-cccCCCCcCCCCceeEEEc
Q psy8880 83 SNLTTLDLSHNFLRALT-----QDLITPLKSLQELRLDDNDI-SMVTPDVIGDNVTITTLTL 138 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~-----~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~~L~~l~l 138 (141)
+.++.+.++.+...... ...-..+..+..+-+.+++. ++..-+.+..|+.|+.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 66666666644221111 11112334555566655543 2333344555555555544
No 78
>KOG1947|consensus
Probab=89.21 E-value=0.38 Score=34.05 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=49.0
Q ss_pred hhcCCCCccEEEccCC-cc-ccc---cccccCCCCCccEEeccCcc-cceeCchhhcc-CCCCCEEECCCCc-cceec-c
Q psy8880 6 TVRRLSSLKVLSIAHN-QF-SSV---RRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRA-LSTLSHLDLAHNR-IVAVS-G 76 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~-~~-~~~---~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~-~~~l~~l~l~~~~-~~~~~-~ 76 (141)
....++.|+.+++.++ .. ... .......+.+++.++++++. ++...-..+.. ++.|+.+.+..+. +++.. .
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 4556777777777763 11 111 01123345677777777776 55444333332 6777777766555 33222 1
Q ss_pred hhhcCCCCcCEEEcCCCcC
Q psy8880 77 ASLAHLSNLTTLDLSHNFL 95 (141)
Q Consensus 77 ~~~~~~~~L~~l~l~~n~l 95 (141)
.....++.|++++++++..
T Consensus 289 ~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhcCcccEEeeecCcc
Confidence 2333466777777776543
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.64 E-value=0.69 Score=18.88 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=12.1
Q ss_pred CCCCEEEcCCCCcccc
Q psy8880 107 KSLQELRLDDNDISMV 122 (141)
Q Consensus 107 ~~L~~l~l~~n~~~~~ 122 (141)
.+|+.|+++.|.++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5678888888887665
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.01 E-value=0.66 Score=19.14 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=10.7
Q ss_pred CCCCEEEcCCCCccc
Q psy8880 107 KSLQELRLDDNDISM 121 (141)
Q Consensus 107 ~~L~~l~l~~n~~~~ 121 (141)
++|+.|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467788888877753
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.93 E-value=1 Score=18.40 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=5.8
Q ss_pred cCEEEcCCCcCccc
Q psy8880 85 LTTLDLSHNFLRAL 98 (141)
Q Consensus 85 L~~l~l~~n~l~~~ 98 (141)
|+.|+.++|.++.+
T Consensus 4 L~~L~vs~N~Lt~L 17 (26)
T smart00364 4 LKELNVSNNQLTSL 17 (26)
T ss_pred cceeecCCCccccC
Confidence 33444444444433
No 82
>KOG4341|consensus
Probab=80.43 E-value=1.9 Score=30.65 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=69.8
Q ss_pred hhhhcCCCCccEEEccCCc-ccccccccc-CCCCCccEEeccCcccceeC--chhhccCCCCCEEECCCCccceec----
Q psy8880 4 WCTVRRLSSLKVLSIAHNQ-FSSVRRGAL-AGLDKLTSLSCHHNQIDVLE--DHSFRALSTLSHLDLAHNRIVAVS---- 75 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~-~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~~~---- 75 (141)
++--.++.+|+.+-+..|+ ++...-..+ ..+++|+.+++..+...... ...-.+++.++.+.++.+......
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~ 392 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH 392 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence 3445677899999999886 333222222 24678999999887554332 112245788999888855432221
Q ss_pred -chhhcCCCCcCEEEcCCCcCc-ccChhhcCCCCCCCEEEcCCCC
Q psy8880 76 -GASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDND 118 (141)
Q Consensus 76 -~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~ 118 (141)
...-..+..+..+.+.++... +..-..+..++.|+.+++.+++
T Consensus 393 l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 393 LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 111223456777777776543 3333556777888888887764
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.12 E-value=1.5 Score=17.51 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=5.8
Q ss_pred CCccEEEccCC
Q psy8880 11 SSLKVLSIAHN 21 (141)
Q Consensus 11 ~~L~~l~l~~~ 21 (141)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 84
>KOG3763|consensus
Probab=77.81 E-value=1.4 Score=32.27 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=16.6
Q ss_pred CCCccEEeccCcccceeCch-hh-ccCCCCCEEECCCC
Q psy8880 34 LDKLTSLSCHHNQIDVLEDH-SF-RALSTLSHLDLAHN 69 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~~-~~-~~~~~l~~l~l~~~ 69 (141)
.+.+..+.+++|++..+..- .+ ...|.++.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554443320 11 12355556666555
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.61 E-value=2.9 Score=36.56 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=27.4
Q ss_pred ECCCCccceecchhhcCCCCcCEEEcCCCcCc
Q psy8880 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96 (141)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 96 (141)
||++|++..+.+..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998888888888999999999998765
No 86
>KOG4308|consensus
Probab=72.20 E-value=0.12 Score=37.16 Aligned_cols=118 Identities=23% Similarity=0.284 Sum_probs=62.0
Q ss_pred hhhhcCCCCccEEEccCCccccc----cccc----cCCCCCccEEeccCcccceeCch----hhccCCC-CCEEECCCCc
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSV----RRGA----LAGLDKLTSLSCHHNQIDVLEDH----SFRALST-LSHLDLAHNR 70 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~----~~~~----~~~~~~l~~l~l~~~~~~~~~~~----~~~~~~~-l~~l~l~~~~ 70 (141)
.+.+....+++.++++.|.+... .+.. +....+++++.+.+|.++..... .+...++ +..+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 34455566666777776665321 1111 22355677777777666532221 1222233 4556666666
Q ss_pred cceecc----hhhcCC-CCcCEEEcCCCcCcccCh----hhcCCCCCCCEEEcCCCCccc
Q psy8880 71 IVAVSG----ASLAHL-SNLTTLDLSHNFLRALTQ----DLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 71 ~~~~~~----~~~~~~-~~L~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~~ 121 (141)
+.+... ..+..+ ..++++++..|.+..... ..+..++.++.+.++.|.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 653311 123333 456777777777665443 223455667777777776654
No 87
>KOG3763|consensus
Probab=71.31 E-value=3.3 Score=30.45 Aligned_cols=65 Identities=29% Similarity=0.350 Sum_probs=40.1
Q ss_pred cCCCCCEEECCCCccceecc-hhh-cCCCCcCEEEcCCC--cCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 57 ALSTLSHLDLAHNRIVAVSG-ASL-AHLSNLTTLDLSHN--FLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 57 ~~~~l~~l~l~~~~~~~~~~-~~~-~~~~~L~~l~l~~n--~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
+.+.+..+.++.|++..... +.+ ...+++..|+|++| .+.....-.--+...|+.|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 35677888888888866532 222 23578889999988 3333222111123467888888888754
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=65.13 E-value=4.8 Score=35.38 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=26.5
Q ss_pred EccCCccccccccccCCCCCccEEeccCcccc
Q psy8880 17 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48 (141)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 48 (141)
+|++|+|..+.+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888888888888889999999888654
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.54 E-value=30 Score=14.10 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=7.0
Q ss_pred hcCCCCccEEEcc
Q psy8880 7 VRRLSSLKVLSIA 19 (141)
Q Consensus 7 ~~~l~~L~~l~l~ 19 (141)
+..+|+|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 4455666665543
Done!