Query psy8880
Match_columns 141
No_of_seqs 123 out of 1994
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 21:45:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 4.6E-24 1.6E-28 136.5 14.6 137 5-141 53-189 (251)
2 2v9t_B SLIT homolog 2 protein 99.9 6.2E-24 2.1E-28 133.5 14.3 131 11-141 32-162 (220)
3 3rfs_A Internalin B, repeat mo 99.9 5.1E-23 1.7E-27 133.0 14.9 136 6-141 80-215 (272)
4 2v70_A SLIT-2, SLIT homolog 2 99.9 6.2E-23 2.1E-27 129.0 14.5 131 11-141 32-163 (220)
5 2o6q_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 132.1 14.6 135 6-140 56-190 (270)
6 3m19_A Variable lymphocyte rec 99.9 5.7E-23 2E-27 131.4 13.9 131 11-141 35-165 (251)
7 3e6j_A Variable lymphocyte rec 99.9 5.6E-23 1.9E-27 129.9 13.6 130 11-141 40-169 (229)
8 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 130.7 14.7 136 6-141 80-215 (270)
9 2o6s_A Variable lymphocyte rec 99.9 1.8E-22 6.2E-27 125.7 14.4 132 10-141 27-158 (208)
10 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-22 6.5E-27 131.0 14.4 134 7-140 76-210 (285)
11 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-22 1.2E-26 129.8 14.4 137 5-141 50-187 (285)
12 3rfs_A Internalin B, repeat mo 99.9 6.8E-22 2.3E-26 127.8 14.5 135 5-141 57-191 (272)
13 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-22 1E-26 141.7 13.4 131 11-141 52-183 (635)
14 1p9a_G Platelet glycoprotein I 99.9 2.7E-21 9.2E-26 126.1 14.4 134 5-141 49-182 (290)
15 1ogq_A PGIP-2, polygalacturona 99.9 8.1E-22 2.8E-26 129.7 11.1 134 6-140 96-230 (313)
16 2z66_A Variable lymphocyte rec 99.9 1.4E-21 4.9E-26 128.0 12.2 136 6-141 121-258 (306)
17 2z66_A Variable lymphocyte rec 99.9 4.3E-21 1.5E-25 125.7 14.3 139 3-141 93-233 (306)
18 2z62_A TOLL-like receptor 4, v 99.9 2.6E-21 9E-26 125.1 13.1 131 11-141 28-159 (276)
19 2xot_A Amphoterin-induced prot 99.9 2.9E-21 9.8E-26 129.3 13.5 130 12-141 40-173 (361)
20 3v47_A TOLL-like receptor 5B a 99.9 6.6E-21 2.2E-25 130.7 15.0 132 10-141 274-405 (455)
21 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-21 1.6E-25 126.1 13.1 138 3-141 117-278 (313)
22 1p9a_G Platelet glycoprotein I 99.9 1.5E-20 5.2E-25 122.5 14.2 132 8-141 74-205 (290)
23 2id5_A Lingo-1, leucine rich r 99.9 2.9E-21 9.9E-26 133.3 11.3 66 7-72 52-117 (477)
24 3vq2_A TLR4, TOLL-like recepto 99.9 6.3E-21 2.2E-25 134.8 13.2 131 11-141 32-163 (606)
25 1w8a_A SLIT protein; signaling 99.9 1.7E-20 5.8E-25 115.6 13.1 125 14-141 11-136 (192)
26 2xot_A Amphoterin-induced prot 99.9 2.2E-21 7.5E-26 129.9 9.8 136 6-141 58-199 (361)
27 2z80_A TOLL-like receptor 2, v 99.9 3.7E-21 1.3E-25 128.3 10.8 128 12-139 53-182 (353)
28 2id5_A Lingo-1, leucine rich r 99.9 1.3E-20 4.3E-25 130.1 13.3 138 4-141 73-210 (477)
29 2z62_A TOLL-like receptor 4, v 99.9 5.2E-21 1.8E-25 123.8 10.6 123 6-128 47-170 (276)
30 3rgz_A Protein brassinosteroid 99.9 7.7E-21 2.6E-25 137.7 12.4 139 3-141 410-548 (768)
31 2z80_A TOLL-like receptor 2, v 99.9 1.4E-20 4.9E-25 125.5 12.5 136 6-141 71-208 (353)
32 3zyj_A Leucine-rich repeat-con 99.9 4.7E-20 1.6E-24 126.2 15.2 57 85-141 209-265 (440)
33 4fcg_A Uncharacterized protein 99.9 7.5E-21 2.6E-25 125.9 10.8 106 34-141 182-287 (328)
34 3rgz_A Protein brassinosteroid 99.8 1.3E-20 4.5E-25 136.5 12.6 83 59-141 632-714 (768)
35 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-20 3.8E-25 133.5 11.9 134 7-140 395-530 (606)
36 2v9t_B SLIT homolog 2 protein 99.8 5.6E-20 1.9E-24 115.5 13.8 125 14-141 14-138 (220)
37 3o6n_A APL1; leucine-rich repe 99.8 1.7E-20 5.8E-25 126.6 12.2 130 11-140 45-174 (390)
38 3zyi_A Leucine-rich repeat-con 99.8 3.7E-20 1.3E-24 127.1 14.0 134 6-141 94-228 (452)
39 4ezg_A Putative uncharacterize 99.8 1.8E-20 6.1E-25 115.9 11.2 130 6-141 61-191 (197)
40 3zyi_A Leucine-rich repeat-con 99.8 4.8E-20 1.7E-24 126.6 14.4 134 6-141 118-252 (452)
41 3zyj_A Leucine-rich repeat-con 99.8 4.9E-20 1.7E-24 126.2 14.3 134 6-141 83-217 (440)
42 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-20 8.7E-25 133.3 13.2 131 11-141 25-155 (680)
43 2z63_A TOLL-like receptor 4, v 99.8 2.8E-20 9.7E-25 130.5 13.1 131 11-141 28-159 (570)
44 3t6q_A CD180 antigen; protein- 99.8 4.9E-20 1.7E-24 130.3 14.3 130 12-141 34-163 (606)
45 2wfh_A SLIT homolog 2 protein 99.8 1.1E-19 3.6E-24 112.1 13.7 124 14-141 13-136 (193)
46 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.6E-25 119.6 9.9 133 6-141 50-189 (239)
47 2xwt_C Thyrotropin receptor; s 99.8 1.9E-20 6.3E-25 118.9 10.5 128 12-141 32-166 (239)
48 2ell_A Acidic leucine-rich nuc 99.8 8.9E-21 3E-25 114.5 8.6 132 8-141 21-157 (168)
49 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 124.9 9.8 136 3-141 119-263 (328)
50 3t6q_A CD180 antigen; protein- 99.8 2.7E-20 9.2E-25 131.6 11.5 138 4-141 50-189 (606)
51 2o6s_A Variable lymphocyte rec 99.8 1.4E-20 4.7E-25 117.2 8.9 117 5-121 46-162 (208)
52 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-20 2E-24 115.5 11.7 116 6-121 52-167 (220)
53 3oja_B Anopheles plasmodium-re 99.8 4.5E-20 1.5E-24 130.5 12.4 130 11-140 51-180 (597)
54 2o6r_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 109.5 13.5 126 13-141 9-134 (177)
55 2je0_A Acidic leucine-rich nuc 99.8 1.2E-20 4.2E-25 111.8 7.6 131 8-140 14-149 (149)
56 3o6n_A APL1; leucine-rich repe 99.8 9.7E-20 3.3E-24 122.9 12.8 132 6-140 64-195 (390)
57 2z63_A TOLL-like receptor 4, v 99.8 7.4E-20 2.5E-24 128.4 12.6 135 7-141 392-528 (570)
58 2z81_A CD282 antigen, TOLL-lik 99.8 6.8E-20 2.3E-24 128.2 12.3 131 11-141 26-158 (549)
59 2z81_A CD282 antigen, TOLL-lik 99.8 3.3E-20 1.1E-24 129.8 10.6 138 4-141 43-182 (549)
60 3v47_A TOLL-like receptor 5B a 99.8 1.3E-19 4.5E-24 124.3 13.1 131 11-141 30-164 (455)
61 4g8a_A TOLL-like receptor 4; l 99.8 1.9E-19 6.5E-24 127.4 14.2 137 5-141 439-577 (635)
62 3oja_B Anopheles plasmodium-re 99.8 1.4E-19 4.7E-24 128.1 12.8 133 6-141 70-202 (597)
63 1ziw_A TOLL-like receptor 3; i 99.8 4.1E-20 1.4E-24 132.2 10.1 136 6-141 449-594 (680)
64 1xku_A Decorin; proteoglycan, 99.8 6.5E-19 2.2E-23 116.5 13.8 132 6-141 140-273 (330)
65 1a9n_A U2A', U2A'; complex (nu 99.8 7.2E-20 2.5E-24 111.3 8.3 131 6-141 14-150 (176)
66 1w8a_A SLIT protein; signaling 99.8 4.2E-19 1.4E-23 109.4 11.4 111 12-122 30-141 (192)
67 3e6j_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 111.0 12.7 125 13-141 21-145 (229)
68 1wwl_A Monocyte differentiatio 99.8 1.5E-19 5.2E-24 118.8 8.9 133 8-141 118-263 (312)
69 2o6r_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 105.5 12.0 113 10-122 27-139 (177)
70 2wfh_A SLIT homolog 2 protein 99.8 1.1E-18 3.8E-23 107.5 11.4 110 11-121 31-140 (193)
71 1xku_A Decorin; proteoglycan, 99.8 3.6E-18 1.2E-22 112.9 14.6 134 4-141 164-303 (330)
72 3j0a_A TOLL-like receptor 5; m 99.8 7.4E-19 2.5E-23 128.5 12.2 133 9-141 22-158 (844)
73 1h6u_A Internalin H; cell adhe 99.8 2.2E-18 7.5E-23 113.2 13.3 61 7-71 59-119 (308)
74 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-18 4.4E-23 121.2 12.7 135 4-141 341-478 (520)
75 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.1E-23 112.5 12.9 124 7-140 64-187 (291)
76 1xeu_A Internalin C; cellular 99.8 1.7E-18 5.9E-23 111.4 12.3 125 6-141 58-182 (263)
77 4eco_A Uncharacterized protein 99.8 1.6E-19 5.6E-24 128.5 8.2 138 3-141 198-363 (636)
78 1h6u_A Internalin H; cell adhe 99.8 3.1E-18 1.1E-22 112.4 13.2 125 7-141 81-205 (308)
79 4ezg_A Putative uncharacterize 99.8 4.3E-19 1.5E-23 109.6 8.6 128 8-141 41-169 (197)
80 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-18 8.8E-23 113.2 12.6 129 9-141 118-247 (317)
81 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-18 4.7E-23 115.1 11.3 46 5-50 72-117 (332)
82 2ft3_A Biglycan; proteoglycan, 99.8 2.7E-18 9.1E-23 113.7 12.3 126 11-140 54-181 (332)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.4E-18 8.1E-23 121.0 12.5 135 4-141 370-507 (562)
84 1h6t_A Internalin B; cell adhe 99.8 4.9E-18 1.7E-22 110.7 13.0 125 7-141 86-210 (291)
85 3oja_A Leucine-rich immune mol 99.8 3.7E-18 1.3E-22 118.3 12.9 129 9-141 118-247 (487)
86 4fmz_A Internalin; leucine ric 99.8 3.2E-18 1.1E-22 113.8 11.9 127 7-141 217-343 (347)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-18 1.3E-22 119.9 12.8 126 11-140 52-178 (562)
88 4ecn_A Leucine-rich repeat pro 99.8 1.1E-18 3.8E-23 127.5 9.9 137 3-141 440-605 (876)
89 1wwl_A Monocyte differentiatio 99.8 2.8E-19 9.7E-24 117.5 5.9 132 9-141 93-238 (312)
90 3oja_A Leucine-rich immune mol 99.8 2.1E-18 7.1E-23 119.5 9.8 59 12-72 35-93 (487)
91 1m9s_A Internalin B; cell inva 99.8 8.7E-18 3E-22 119.0 13.1 127 6-140 60-206 (605)
92 2z7x_B TOLL-like receptor 1, v 99.8 2.8E-18 9.4E-23 119.5 10.1 131 3-141 15-148 (520)
93 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-18 5.8E-23 126.6 8.8 125 4-128 41-169 (844)
94 4eco_A Uncharacterized protein 99.8 7.8E-18 2.7E-22 120.0 11.8 131 9-141 431-576 (636)
95 2ell_A Acidic leucine-rich nuc 99.8 3.1E-18 1.1E-22 103.2 8.4 119 2-122 40-162 (168)
96 1xeu_A Internalin C; cellular 99.8 8.1E-18 2.8E-22 108.2 10.7 125 6-141 36-160 (263)
97 4ecn_A Leucine-rich repeat pro 99.7 2.7E-18 9.3E-23 125.5 8.2 135 3-141 481-629 (876)
98 1m9s_A Internalin B; cell inva 99.7 3.3E-17 1.1E-21 116.0 13.4 117 6-130 104-220 (605)
99 4glp_A Monocyte differentiatio 99.7 1.4E-18 4.9E-23 114.1 6.1 130 9-141 143-282 (310)
100 3o53_A Protein LRIM1, AGAP0063 99.7 9.4E-18 3.2E-22 110.5 9.8 133 7-141 30-179 (317)
101 4fmz_A Internalin; leucine ric 99.7 2.4E-17 8.3E-22 109.5 11.1 125 9-141 197-321 (347)
102 3g39_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 97.8 11.2 107 13-122 11-117 (170)
103 3g39_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 98.1 10.7 103 36-141 10-112 (170)
104 4glp_A Monocyte differentiatio 99.7 9.9E-18 3.4E-22 110.1 7.9 132 5-141 163-304 (310)
105 1o6v_A Internalin A; bacterial 99.7 1.2E-16 3.9E-21 110.2 13.3 125 7-141 261-385 (466)
106 1o6v_A Internalin A; bacterial 99.7 1.4E-16 4.8E-21 109.8 13.0 125 7-141 239-363 (466)
107 2je0_A Acidic leucine-rich nuc 99.7 1.7E-17 6E-22 98.1 7.3 113 2-116 33-149 (149)
108 2r9u_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 97.0 10.7 107 13-122 14-120 (174)
109 2r9u_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 96.2 11.3 101 38-141 15-115 (174)
110 2ast_B S-phase kinase-associat 99.7 9.6E-18 3.3E-22 111.0 5.8 139 3-141 110-257 (336)
111 1dce_A Protein (RAB geranylger 99.7 1.5E-16 5E-21 112.0 11.4 122 12-138 442-567 (567)
112 3bz5_A Internalin-J, INLJ; leu 99.7 2.5E-16 8.7E-21 108.4 11.2 121 6-140 37-157 (457)
113 4b8c_D Glucose-repressible alc 99.7 1.1E-16 3.8E-21 115.5 8.7 110 28-141 217-326 (727)
114 1ds9_A Outer arm dynein; leuci 99.7 2.4E-19 8.2E-24 110.9 -5.0 130 3-137 40-180 (198)
115 4ay9_X Follicle-stimulating ho 99.7 5.2E-16 1.8E-20 103.5 10.1 97 3-101 24-122 (350)
116 2ca6_A RAN GTPase-activating p 99.7 2.3E-17 7.8E-22 111.2 3.6 134 8-141 91-254 (386)
117 3bz5_A Internalin-J, INLJ; leu 99.7 2.5E-15 8.5E-20 103.5 13.5 100 6-117 59-158 (457)
118 1a9n_A U2A', U2A'; complex (nu 99.7 2.7E-16 9.4E-21 95.4 7.6 110 10-121 41-154 (176)
119 2ast_B S-phase kinase-associat 99.7 1.5E-16 5.3E-21 105.2 6.8 139 3-141 134-282 (336)
120 3goz_A Leucine-rich repeat-con 99.7 5.7E-17 1.9E-21 108.6 4.7 64 11-74 22-95 (362)
121 4b8c_D Glucose-repressible alc 99.7 1.5E-16 5.1E-21 114.9 7.2 118 4-125 217-334 (727)
122 3sb4_A Hypothetical leucine ri 99.7 4.9E-15 1.7E-19 98.0 13.3 101 35-137 226-327 (329)
123 3goz_A Leucine-rich repeat-con 99.6 7.8E-17 2.7E-21 107.9 4.2 137 5-141 44-206 (362)
124 3sb4_A Hypothetical leucine ri 99.6 6.9E-15 2.3E-19 97.3 12.6 129 10-141 100-307 (329)
125 2ca6_A RAN GTPase-activating p 99.6 8.6E-17 3E-21 108.4 3.1 87 55-141 212-313 (386)
126 3cvr_A Invasion plasmid antige 99.6 5.6E-15 1.9E-19 104.0 10.7 95 34-141 139-240 (571)
127 2ifg_A High affinity nerve gro 99.6 1.2E-14 4.1E-19 96.7 11.6 104 15-121 12-117 (347)
128 1dce_A Protein (RAB geranylger 99.6 5.5E-15 1.9E-19 104.1 9.8 101 36-141 442-543 (567)
129 2ifg_A High affinity nerve gro 99.6 1.2E-14 4.1E-19 96.7 10.6 101 38-141 11-113 (347)
130 1ds9_A Outer arm dynein; leuci 99.6 1.6E-18 5.3E-23 107.2 -7.6 130 7-141 14-150 (198)
131 3cvr_A Invasion plasmid antige 99.6 6.2E-14 2.1E-18 98.8 12.7 95 11-121 80-174 (571)
132 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.8E-19 97.1 8.5 130 5-135 98-230 (350)
133 1z7x_W Ribonuclease inhibitor; 99.6 5E-16 1.7E-20 106.6 1.2 82 60-141 314-408 (461)
134 1jl5_A Outer protein YOPM; leu 99.5 3.1E-13 1.1E-17 93.0 12.2 79 11-97 131-209 (454)
135 1jl5_A Outer protein YOPM; leu 99.5 4.5E-13 1.5E-17 92.2 12.6 103 7-121 149-251 (454)
136 1z7x_W Ribonuclease inhibitor; 99.5 8.1E-15 2.8E-19 100.6 3.9 21 4-24 106-126 (461)
137 3g06_A SSPH2 (leucine-rich rep 99.5 3.5E-13 1.2E-17 95.9 12.1 95 11-121 61-155 (622)
138 3g06_A SSPH2 (leucine-rich rep 99.5 4.1E-13 1.4E-17 95.5 12.2 94 35-141 201-294 (622)
139 3un9_A NLR family member X1; l 99.4 2E-14 6.7E-19 96.7 1.7 131 11-141 101-249 (372)
140 4fdw_A Leucine rich hypothetic 99.4 1.1E-11 3.7E-16 84.1 12.9 61 5-67 174-234 (401)
141 4fdw_A Leucine rich hypothetic 99.4 9.9E-12 3.4E-16 84.3 12.0 130 6-141 221-355 (401)
142 3un9_A NLR family member X1; l 99.4 5.4E-14 1.8E-18 94.6 0.5 132 10-141 71-221 (372)
143 3ogk_B Coronatine-insensitive 99.2 1.5E-12 5.3E-17 91.8 0.5 133 9-141 376-523 (592)
144 3ogk_B Coronatine-insensitive 99.2 2.8E-11 9.6E-16 85.4 5.9 83 8-91 161-251 (592)
145 2p1m_B Transport inhibitor res 99.1 1.2E-11 4.1E-16 87.3 0.9 131 10-141 371-516 (594)
146 2p1m_B Transport inhibitor res 99.1 2.5E-11 8.7E-16 85.6 1.9 128 8-137 102-241 (594)
147 1io0_A Tropomodulin; LRR prote 99.0 1.4E-10 4.7E-15 70.9 3.7 117 4-120 29-164 (185)
148 2ra8_A Uncharacterized protein 99.0 2.4E-10 8.1E-15 76.6 3.7 134 5-141 166-317 (362)
149 4h09_A Hypothetical leucine ri 99.0 1.6E-08 5.6E-13 67.9 12.3 108 28-138 233-340 (379)
150 4h09_A Hypothetical leucine ri 98.9 2.8E-08 9.6E-13 66.8 11.3 124 6-133 235-358 (379)
151 4gt6_A Cell surface protein; l 98.9 2.5E-08 8.7E-13 67.4 11.0 127 6-139 260-386 (394)
152 1io0_A Tropomodulin; LRR prote 98.9 5E-10 1.7E-14 68.4 2.1 114 28-141 29-161 (185)
153 4fs7_A Uncharacterized protein 98.8 1.2E-07 4.2E-12 64.1 12.0 100 31-135 293-392 (394)
154 4gt6_A Cell surface protein; l 98.8 9.4E-08 3.2E-12 64.6 11.4 112 26-141 256-367 (394)
155 3rw6_A Nuclear RNA export fact 98.8 8.2E-10 2.8E-14 71.0 0.9 81 56-137 167-257 (267)
156 4fs7_A Uncharacterized protein 98.8 1.7E-07 5.7E-12 63.5 11.1 128 6-140 248-375 (394)
157 3e4g_A ATP synthase subunit S, 98.7 8.9E-09 3E-13 62.1 3.4 87 35-121 61-154 (176)
158 2ra8_A Uncharacterized protein 98.7 7.9E-09 2.7E-13 69.3 3.4 133 5-141 133-289 (362)
159 3e4g_A ATP synthase subunit S, 98.6 2.8E-08 9.6E-13 59.9 3.4 86 9-94 59-150 (176)
160 3rw6_A Nuclear RNA export fact 98.6 6.4E-08 2.2E-12 62.2 4.4 82 32-114 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 2.3E-05 7.8E-10 48.1 4.9 113 6-118 36-168 (197)
162 3rfe_A Platelet glycoprotein I 97.7 8.8E-05 3E-09 42.5 5.7 56 62-120 11-68 (130)
163 3rfe_A Platelet glycoprotein I 97.7 0.0001 3.5E-09 42.2 5.9 54 15-71 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.7 2.6E-05 8.9E-10 47.9 3.5 111 31-141 37-167 (197)
165 2lz0_A Uncharacterized protein 94.5 0.076 2.6E-06 28.7 4.2 48 69-117 6-53 (100)
166 2lz0_A Uncharacterized protein 93.3 0.24 8.1E-06 26.8 4.8 48 21-69 6-53 (100)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=4.6e-24 Score=136.46 Aligned_cols=137 Identities=27% Similarity=0.392 Sum_probs=120.6
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
..|.++++|++|++++|.+....+..+..+++|++|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 45788889999999999998888878888899999999999999888878888899999999999988887777888899
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|+.|++++|.+..+++..+..+++|+.|++++|.+++..+..+..+++|+.+++++|
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999999999999888877888999999999999999887778888999999999886
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.92 E-value=6.2e-24 Score=133.55 Aligned_cols=131 Identities=24% Similarity=0.350 Sum_probs=124.3
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.|++++|.+..+.+..|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+..+.+..+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 58999999999999998888999999999999999999998889999999999999999999888778889999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+..+++..+..+++|+.|++++|.++++.+..+..+++|+.+++++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 999999999988999999999999999999998888999999999999987
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.1e-23 Score=133.03 Aligned_cols=136 Identities=31% Similarity=0.471 Sum_probs=106.2
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|++|++++|.+....+..+..+++|+.|++++|+++..++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 56677777777777777777766667777888888888888877777667777888888888888777766667777888
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++|.+++.++..++.+++|+.|++++|.+++..+..++.+++|+.+++++|
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 88888888888777776777888888888888888877777788888888888775
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.91 E-value=6.2e-23 Score=128.99 Aligned_cols=131 Identities=26% Similarity=0.377 Sum_probs=122.1
Q ss_pred CCccEEEccCCccccccc-cccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEE
Q psy8880 11 SSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 89 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 89 (141)
..++.|++++|.+....+ ..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999998854 5688999999999999999999988999999999999999999999888899999999999
Q ss_pred cCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 90 LSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 90 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+++|.+.++++..+..+++|+.|++++|.+++..|..+..+++|+.+++++|
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9999999998888999999999999999999998999999999999999987
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.7e-23 Score=132.06 Aligned_cols=135 Identities=27% Similarity=0.425 Sum_probs=67.7
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|.++++|++|++++|.+..+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 35555555555555555555544445555555555555555555554444455555555555555544444444444455
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|++++|.+..+++..+..+++|+.|++++|.++++.+..+..+++|+.|++++
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 5555555544444444444444444444444444444333344444444444443
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.7e-23 Score=131.39 Aligned_cols=131 Identities=27% Similarity=0.435 Sum_probs=123.6
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
+.++.|++++|.+....+..+..+++|++|++++|.++..++..|..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57999999999999998888999999999999999999999888999999999999999999888888899999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+..+++..+..+++|+.|++++|.++++.+..++.+++|+.|++++|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 999999999888899999999999999999998878999999999999987
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=5.6e-23 Score=129.90 Aligned_cols=130 Identities=26% Similarity=0.377 Sum_probs=121.2
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++|+.|++++|.+....+..+..+++|+.|++++|+++.+++..|..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 78999999999999998888999999999999999999998888899999999999999999888788889999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+..++.. +..+++|+.|++++|.++++.+..+..+++|+.+++++|
T Consensus 120 s~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 120 CCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99999988655 688999999999999999988888999999999999987
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-22 Score=130.72 Aligned_cols=136 Identities=24% Similarity=0.388 Sum_probs=127.5
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|.++++|++|++++|.+...++..+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 46889999999999999999988888999999999999999999998889999999999999999998877778899999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++|.+..+++..+..+++|+.|++++|.++++.+..+..+++|+.+++++|
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 99999999999999888899999999999999999988888999999999999987
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=125.74 Aligned_cols=132 Identities=24% Similarity=0.392 Sum_probs=122.5
Q ss_pred CCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEE
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 89 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 89 (141)
.+++++|++++|.+....+..+..+++|++|++++|+++.+++..|..+++|+++++++|.+....+..+..+++|++++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45899999999999998888889999999999999999999887888999999999999999988777788999999999
Q ss_pred cCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 90 LSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 90 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+++|.+..+++..+..+++|+.|++++|.++++.+..+..+++|+.+++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9999999999888899999999999999999987778999999999999987
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.9e-22 Score=131.04 Aligned_cols=134 Identities=28% Similarity=0.373 Sum_probs=59.9
Q ss_pred hcCCCCccEEEccCCc-cccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 7 VRRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
|.++++|++|++++|. +....+..+..+++|++|++++|.++...+..|..+++|+.+++++|.+....+..+..+++|
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence 3344444444444443 333333334444444444444444444433334444444444444444444433334444444
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
+.+++++|.++.+++..+..+++|+.|++++|.+++..+..++.+++|+.|++++
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 4444444444444444444444444444444444444444444444455554444
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=3.5e-22 Score=129.77 Aligned_cols=137 Identities=25% Similarity=0.332 Sum_probs=106.5
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcc-cceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
..|..+++|++|++++|.+....+..+..+++|++|++++|. ++.+.+..|..+++|+.+++++|.+....+..+..++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 356777788888888887777766777777888888888776 7777666777778888888888887777667777788
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|+++++++|.+...++..++.+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 8888888888888777776777888888888888888776667788888888888765
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.8e-22 Score=127.76 Aligned_cols=135 Identities=27% Similarity=0.420 Sum_probs=124.1
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
..+..+++|++|++++|.+... ..+..+++|++|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 4578899999999999999885 36889999999999999999998888899999999999999999888778889999
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|++|++++|.+.+.++..+..+++|+.|++++|.+++..+..++.+++|+.|++++|
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 999999999999999888899999999999999999988888899999999999886
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=2.9e-22 Score=141.73 Aligned_cols=131 Identities=27% Similarity=0.326 Sum_probs=121.5
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.|++++|+++.+++..|..+++|++|++++|+++.+++.+|..+++|++|++++|++....+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37899999999999998889999999999999999999999989999999999999999999998888999999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCcccc-CCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMV-TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n 141 (141)
++|.++++++..++.+++|+.|++++|.++.. .|..++.+++|+.|++++|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 99999999988899999999999999999765 4677888999999999876
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.7e-21 Score=126.07 Aligned_cols=134 Identities=25% Similarity=0.378 Sum_probs=78.2
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
..|.++++|+.|++++|.+....+. ..+++|+.|++++|+++.++. .+..+++|+.|++++|.+....+..+..+++
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred HHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence 4566666666666666666654332 445555555555555554433 4445556666666666666555555556666
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|+.|++++|.+..+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 666666666666665555555666666666666666555555555666666665554
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=8.1e-22 Score=129.73 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=52.7
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC-C
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-N 84 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~ 84 (141)
.+.++++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+++++++|.+....|..+..++ .
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence 333444444444444444333333344444444444444444433333344444444444444444333333333333 3
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
|+.+++++|.+.+..+..+..++ |+.|++++|.+++..+..+..+++|+.|++++
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 44444444443333222233322 33333333333333333344444444444443
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.4e-21 Score=127.99 Aligned_cols=136 Identities=26% Similarity=0.304 Sum_probs=94.1
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccce-eCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
.+..+++|++|++++|.+....+..+..+++|+.|++++|.++. ..+..+..+++|+.+++++|.+....+..+..+++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 45566666666666666666555566666677777777776664 33445666677777777777777666666777777
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCC-ceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNV-TITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l~~n 141 (141)
|+.|++++|.+.+.++..+..+++|+.|++++|.+++..+..+..++ +|+.+++++|
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 77777777777777666667777777777777777777677777764 7777777765
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4.3e-21 Score=125.74 Aligned_cols=139 Identities=24% Similarity=0.267 Sum_probs=127.0
Q ss_pred hhhhhcCCCCccEEEccCCccccccc-cccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccce-ecchhhc
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA-VSGASLA 80 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~ 80 (141)
+|..+..+++|++|++++|.+....+ ..+..+++|+.+++++|.+....+..|..+++|+.+++++|.+.. ..+..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 45678899999999999999998765 578899999999999999999888889999999999999999976 5577888
Q ss_pred CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+++|+.|++++|.+.+.++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 9999999999999999998888999999999999999999987778999999999999986
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.6e-21 Score=125.14 Aligned_cols=131 Identities=27% Similarity=0.326 Sum_probs=107.9
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
+++++|++++|.+....+..+..+++|+.|++++|.++.+++..|..+++|+++++++|.+....+..+..+++|+++++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888888887777888888888888888888888777888888888888888888877777888888888888
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCcccc-CCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMV-TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+...++..+..+++|+.|++++|.+++. .|..++.+++|+.|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 88888888776678888888888888888774 3677888888888888775
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=2.9e-21 Score=129.34 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=104.7
Q ss_pred CccEEEccCCccccccccccC-CCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 12 SLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
.++.|++++|.+..+.+..+. .+++|+.|++++|+++.+++..|..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 477888888888888777776 7888888888888888888777888888888888888888877777888888888888
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCc---CCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI---GDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~L~~l~l~~n 141 (141)
++|.+..+.+..+..+++|+.|++++|.++.+.+..+ ..+++|+.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 8888888877778888888888888888888755555 56788888888776
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=6.6e-21 Score=130.68 Aligned_cols=132 Identities=24% Similarity=0.408 Sum_probs=124.1
Q ss_pred CCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEE
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 89 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 89 (141)
.++|+.+++++|.+....+..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 36899999999999998888899999999999999999999888999999999999999999998888899999999999
Q ss_pred cCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 90 LSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 90 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+++|.+.+..+..+..+++|+.|++++|.+++..+..++.+++|+.+++++|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 9999999998888999999999999999999987888899999999999987
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=4.7e-21 Score=126.08 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=80.4
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCC-CCCEEECCC-------------
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS-TLSHLDLAH------------- 68 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~l~l~~------------- 68 (141)
+|..+.++++|++|++++|.+....+..+..+++|++|++++|.++...+..+..++ .|+.+++++
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 344555555555555555555544444555555555555555555533333444443 444444444
Q ss_pred ----------CccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEc
Q psy8880 69 ----------NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138 (141)
Q Consensus 69 ----------~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 138 (141)
|.+....+..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+++..|..+..+++|+.|++
T Consensus 197 l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred CcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 444444445555566666666666666555444 556677777777777777666777777777777777
Q ss_pred cCC
Q psy8880 139 SGE 141 (141)
Q Consensus 139 ~~n 141 (141)
++|
T Consensus 276 s~N 278 (313)
T 1ogq_A 276 SFN 278 (313)
T ss_dssp CSS
T ss_pred cCC
Confidence 765
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.5e-20 Score=122.51 Aligned_cols=132 Identities=27% Similarity=0.331 Sum_probs=121.1
Q ss_pred cCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCE
Q psy8880 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 87 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 87 (141)
..+++|+.|++++|.+..+ +..+..+++|+.|++++|+++.+++..|..+++|+.|++++|.+....+..+..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 6789999999999999977 446788999999999999999999888999999999999999999888888889999999
Q ss_pred EEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 88 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 88 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|++++|.++.+++..+..+++|+.|++++|.++.+ |..+..+++|+.+++++|
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCC
Confidence 99999999999998889999999999999999976 666777889999999987
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=133.28 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=25.3
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccc
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 72 (141)
|.++++|++|++++|.+....+..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 333344444444444333333333333333333333333333333333333333333333333333
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=6.3e-21 Score=134.81 Aligned_cols=131 Identities=24% Similarity=0.309 Sum_probs=112.6
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.+++++|.+....+..|..+++|++|++++|.++.+.+..|..+++|++|++++|.+....|..+.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67888999999988887778888899999999999888888878888889999999998888887888888889999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCcccc-CCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMV-TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+.+.++..++.+++|++|++++|.+++. .|..++++++|+.|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 99988888877788888999999998888763 4778888888888888875
No 25
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.86 E-value=1.7e-20 Score=115.59 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=107.0
Q ss_pred cEEEccCCccccccccccCCCCCccEEeccCcccceeCch-hhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
+.++++++.+..++.. + ..+++.|++++|.++.+++. .|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-C--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788999988877543 2 23889999999999888764 478889999999999999888888888899999999999
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|.+.+.++..+..+++|+.|++++|.+++..|..+..+++|+.+++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999988887888999999999999999888888999999999999886
No 26
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=2.2e-21 Score=129.91 Aligned_cols=136 Identities=25% Similarity=0.338 Sum_probs=122.4
Q ss_pred hhc-CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 6 TVR-RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 6 ~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
.+. ++++|+.|++++|++..+.+..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++
T Consensus 58 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 137 (361)
T 2xot_A 58 WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137 (361)
T ss_dssp SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc
Confidence 355 8999999999999999998888999999999999999999999888999999999999999999998889999999
Q ss_pred cCEEEcCCCcCcccChhhc---CCCCCCCEEEcCCCCccccCCCCcCCCCc--eeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLI---TPLKSLQELRLDDNDISMVTPDVIGDNVT--ITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~---~~~~~L~~l~l~~n~~~~~~~~~~~~~~~--L~~l~l~~n 141 (141)
|+.|++++|.+..++...+ ..+++|+.|++++|.++.+.+..+..++. ++.+++++|
T Consensus 138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 9999999999999988766 56899999999999999887667777776 377888876
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=128.31 Aligned_cols=128 Identities=27% Similarity=0.390 Sum_probs=59.9
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcC
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 91 (141)
+|++|++++|.+....+..+..+++|+.|++++|.++...+..|..+++|+++++++|.+....+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44555555555544444444445555555555555554444444444555555555555444433334444455555555
Q ss_pred CCcCcccCh-hhcCCCCCCCEEEcCCC-CccccCCCCcCCCCceeEEEcc
Q psy8880 92 HNFLRALTQ-DLITPLKSLQELRLDDN-DISMVTPDVIGDNVTITTLTLS 139 (141)
Q Consensus 92 ~n~l~~~~~-~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~L~~l~l~ 139 (141)
+|.+..++. ..+..+++|+.|++++| .+....+..++.+++|+.++++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 554444443 33444444444444444 2333333344444444444443
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=130.09 Aligned_cols=138 Identities=25% Similarity=0.347 Sum_probs=128.5
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
|..|.++++|++|++++|.+...++..|..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..++
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 56789999999999999999999888889999999999999999999888999999999999999999998888899999
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|+.|++++|.+..+++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 9999999999999999888999999999999999999988888999999999988764
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=5.2e-21 Score=123.76 Aligned_cols=123 Identities=23% Similarity=0.412 Sum_probs=95.1
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|.++++|++|++++|.+....+..+..+++|++|++++|.++..++..|..+++|+.+++++|.+....+..+..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 67788888888888888888777778888888888888888888887778888888888888888777666567777888
Q ss_pred CEEEcCCCcCcccC-hhhcCCCCCCCEEEcCCCCccccCCCCcC
Q psy8880 86 TTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDVIG 128 (141)
Q Consensus 86 ~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 128 (141)
++|++++|.+.... +..+..+++|+.|++++|.+++..+..+.
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 88888888877643 45567777888888877777665444333
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=7.7e-21 Score=137.71 Aligned_cols=139 Identities=27% Similarity=0.281 Sum_probs=116.1
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.++...+..+..+++|+.+++++|.+....|..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 46677888888888888888887777778888888888888888887777778888888888888888887777788888
Q ss_pred CCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|+.+++++|.+.+..+..++.+++|+.|++++|.+++..|..++.+++|+.+++++|
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 88888888888888777777888888999999888888888888888888888888876
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=125.48 Aligned_cols=136 Identities=21% Similarity=0.356 Sum_probs=125.1
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc-hhhcCCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSN 84 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~ 84 (141)
.+.++++|+.|++++|.+....+..+..+++|++|++++|.++.+++..|..+++|+++++++|.+..... ..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 68899999999999999999888889999999999999999999988779999999999999999987765 57888999
Q ss_pred cCEEEcCCC-cCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHN-FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|+++++++| .+...++..+..+++|+.|++++|.+++..+..++.+++|+.|++++|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 999999998 588888878899999999999999999998999999999999999876
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4.7e-20 Score=126.25 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=28.2
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|+.|++++|.+.+..+..+..+++|+.|++++|.++++.+..+..+++|+.|++++|
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 333333334444444444445555555555555555555555555555555555554
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=7.5e-21 Score=125.89 Aligned_cols=106 Identities=25% Similarity=0.258 Sum_probs=55.5
Q ss_pred CCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEE
Q psy8880 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~ 113 (141)
+++|+.|++++|.++.++. .+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+..+..++.+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 4444444444444443332 3445555555555555555432 2345555555555555555554444455555555555
Q ss_pred cCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 114 LDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 114 l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+++|.+.+..|..++.+++|+.|++++|
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 5555555555555555555655655553
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.3e-20 Score=136.50 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=51.9
Q ss_pred CCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEc
Q psy8880 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138 (141)
Q Consensus 59 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 138 (141)
++++.+++++|.+....|..++.++.|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..++.+++|+.+++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 34455555555555555555666666666666666666655555666666666666666666666666666666666666
Q ss_pred cCC
Q psy8880 139 SGE 141 (141)
Q Consensus 139 ~~n 141 (141)
++|
T Consensus 712 s~N 714 (768)
T 3rgz_A 712 SNN 714 (768)
T ss_dssp CSS
T ss_pred cCC
Confidence 665
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.1e-20 Score=133.54 Aligned_cols=134 Identities=25% Similarity=0.312 Sum_probs=58.1
Q ss_pred hcCCCCccEEEccCCccccccc-cccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccce-ecchhhcCCCC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA-VSGASLAHLSN 84 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~ 84 (141)
+..+++|+.|++++|.+....+ ..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.. ..+..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 3334444444444444433333 234444444444444444444433344444444444444444433 22333444444
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
|+.|++++|.+.+.++..+..+++|+.|++++|.+++..|..++.+++|+.|++++
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 44444444444444444444444444444444444444444444444444444443
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=5.6e-20 Score=115.51 Aligned_cols=125 Identities=24% Similarity=0.359 Sum_probs=115.5
Q ss_pred cEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCC
Q psy8880 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93 (141)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 93 (141)
+.++++++.+..++.. + .++++.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5788999998887543 2 368999999999999999889999999999999999999998899999999999999999
Q ss_pred cCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 94 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+..+++..+..+++|+.|++++|.++++.+..+..+++|+.|++++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 999999988899999999999999999998999999999999999987
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.7e-20 Score=126.60 Aligned_cols=130 Identities=18% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.+++.++.+..+++..+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555555555555544444444555555555555555554444555555555555555555444444455555555555
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|.+..+++..+..+++|++|++++|.+++..+..++.+++|+.|++++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 55555555444444555555555555555554444455555555555544
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=3.7e-20 Score=127.12 Aligned_cols=134 Identities=28% Similarity=0.415 Sum_probs=67.9
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|.++++|+.|++++|.+....+..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 34444455555555555444444444445555555555555544444444444555555555555444444444445555
Q ss_pred CEEEcCC-CcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSH-NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~-n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++ +.+..++...+..+++|+.|++++|.+++. + .+..+++|+.|++++|
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTS
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCC
Confidence 5555554 334444444455555566666666655554 2 3555666666666554
No 39
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=1.8e-20 Score=115.90 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=111.4
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|++|++++|.+... ..+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 577888999999999977665 368889999999999999987666678889999999999999988767788899999
Q ss_pred CEEEcCCCc-CcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNF-LRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|++++|. +..++ .+..+++|+.|++++|.+++.. .+..+++|+.|++++|
T Consensus 139 ~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred CEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 999999998 77775 3788999999999999998863 6888999999999886
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4.8e-20 Score=126.56 Aligned_cols=134 Identities=25% Similarity=0.393 Sum_probs=67.7
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCC-CccceecchhhcCCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH-NRIVAVSGASLAHLSN 84 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~ 84 (141)
.|.++++|++|++++|.+...++..+..+++|+.|++++|.++.+++..|..+++|+.|++++ +.+....+..+..+++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 444555555555555555555444455555555555555555555544455555555555554 2333333334445555
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|+.|++++|.+.+++. +..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 198 L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred CCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 5555555555554432 344555555555555555554555555555555555443
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4.9e-20 Score=126.17 Aligned_cols=134 Identities=25% Similarity=0.433 Sum_probs=75.6
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|.++++|+.|++++|.+....+..|..+++|+.|++++|+++.+++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 45555555555555555555555555555555555555555555555455555555555555555555544455555555
Q ss_pred CEEEcCC-CcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSH-NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~-n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++ +.+..+++..+..+++|+.|++++|.++.+ | .+..+++|+.|++++|
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTS
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCC
Confidence 5555555 344444444555666666666666666654 2 3556666666666654
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.6e-20 Score=133.27 Aligned_cols=131 Identities=27% Similarity=0.369 Sum_probs=102.6
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
+++++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57788888888888777777777888888888888888777777777888888888888777776666777888888888
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+.++++..++.+++|++|++++|.+++..+..++.+++|+.|++++|
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 888887777766777888888888888777777777777777888777764
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-20 Score=130.52 Aligned_cols=131 Identities=27% Similarity=0.326 Sum_probs=113.0
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.|++++|.+....+..|..+++|++|++++|+++.+++..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47888999999998887778888999999999999998888888888899999999999888887788888999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCcccc-CCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMV-TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+..+++..++.+++|++|++++|.+++. .|..++++++|+.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 99988888876688889999999999888874 4778888888999988875
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=4.9e-20 Score=130.28 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=90.0
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcC
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 91 (141)
.++.|++++|.+....+..|..+++|++|++++|.+..+.+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 56777777777777666667777777777777777777766667777777777777777766666667777777777777
Q ss_pred CCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 92 HNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 92 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|.+....+..++.+++|++|++++|.+++.....+..+++|+.|++++|
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 77777765555667777777777777776654334444667777776654
No 45
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=112.15 Aligned_cols=124 Identities=28% Similarity=0.419 Sum_probs=105.0
Q ss_pred cEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCC
Q psy8880 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93 (141)
Q Consensus 14 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 93 (141)
+.++++++.+..++.. + .++++.|++++|.++.++ ..|..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5788888888877543 2 358889999999988776 57888899999999999998887788888899999999999
Q ss_pred cCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 94 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.+++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 999988888888899999999999998887777888889999998876
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.3e-20 Score=119.56 Aligned_cols=133 Identities=12% Similarity=0.277 Sum_probs=79.3
Q ss_pred hhcCCCCccEEEccCCc-cccccccccCCCCCccEEeccC-cccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHH-NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
.|.++++|+.+++++|. +..+.+..|..+++|+++++++ |.++.+++..|..+++|+.+++++|.+...+ . +..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-D-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-C-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-c-ccccc
Confidence 45556666666666664 5555555555666666666665 5666665555556666666666666655532 2 44555
Q ss_pred CcC---EEEcCCC-cCcccChhhcCCCCCCC-EEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 84 NLT---TLDLSHN-FLRALTQDLITPLKSLQ-ELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 84 ~L~---~l~l~~n-~l~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|+ .+++++| .+..+++..+..+++|+ .+++++|.++.+.+..+.. ++|+.+++++|
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 555 6666666 66666665566666666 6666666666554444444 56666666654
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.9e-20 Score=118.90 Aligned_cols=128 Identities=20% Similarity=0.331 Sum_probs=66.9
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcc-cceeCchhhccCCCCCEEECCC-CccceecchhhcCCCCcCEEE
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAH-NRIVAVSGASLAHLSNLTTLD 89 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~ 89 (141)
+++.+++++|++...++..+..+++|+.+++++|. ++.+++..|..+++|+.+++++ |.+....+..+..+++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555544445555555555555554 5555554555555555555554 555554444455555555555
Q ss_pred cCCCcCcccChhhcCCCCCCC---EEEcCCC-CccccCCCCcCCCCcee-EEEccCC
Q psy8880 90 LSHNFLRALTQDLITPLKSLQ---ELRLDDN-DISMVTPDVIGDNVTIT-TLTLSGE 141 (141)
Q Consensus 90 l~~n~l~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~~~~~~~~L~-~l~l~~n 141 (141)
+++|.+.+++. +..+++|+ .+++++| .++++.+..+..+++|+ .+++++|
T Consensus 112 l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 55555555433 44444444 5555555 55555444455555555 5555443
No 48
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.84 E-value=8.9e-21 Score=114.47 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=115.1
Q ss_pred cCCCCccEEEccCCccc-cccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 8 RRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
...++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|+.+++++|.+....+..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45588999999999998 33355678899999999999999987 5788899999999999999886677777799999
Q ss_pred EEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCC---CCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTP---DVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l~~n 141 (141)
+|++++|.+.+++. ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999764 668899999999999999998754 47899999999998765
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.2e-20 Score=124.91 Aligned_cols=136 Identities=26% Similarity=0.334 Sum_probs=88.3
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhc---------cCCCCCEEECCCCccce
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR---------ALSTLSHLDLAHNRIVA 73 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~---------~~~~l~~l~l~~~~~~~ 73 (141)
+|..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+..
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC
T ss_pred hhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc
Confidence 344455555555555555555533 33455555555555555443333322222 25666666666666663
Q ss_pred ecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 74 ~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
. |..+..+++|++|++++|.+.++++. +..+++|+.|++++|.+.+..|..++.+++|+.|++++|
T Consensus 198 l-p~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 198 L-PASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp C-CGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred c-hHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 3 45577778888888888888877654 778888888888888888877888888888888888775
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=2.7e-20 Score=131.62 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=117.8
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
|..|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 56788999999999999999988888899999999999999999988888899999999999999999887677788889
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCcee--EEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTIT--TLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~--~l~l~~n 141 (141)
+|++|++++|.+.++....+..+++|+.|++++|.+++..+..++.+++|+ .+++++|
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 999999999998887544455688899999998888887777777777777 6777765
No 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.4e-20 Score=117.22 Aligned_cols=117 Identities=28% Similarity=0.407 Sum_probs=107.7
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
..+..+++|++|++++|++....+..+..+++|++|++++|.++.+++..|..+++|+.+++++|.+....+..+..+++
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 35789999999999999999988878899999999999999999998878889999999999999999887777889999
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
|+++++++|.+.++++..+..+++|+.|++++|.+.+
T Consensus 126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 9999999999999998888999999999999997764
No 52
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=115.45 Aligned_cols=116 Identities=24% Similarity=0.418 Sum_probs=109.9
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 47899999999999999999988889999999999999999999999889999999999999999999988889999999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
+.|++++|.++++++..+..+++|+.|++++|++.+
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999999999999988889999999999999999864
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.5e-20 Score=130.53 Aligned_cols=130 Identities=18% Similarity=0.304 Sum_probs=62.5
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
.+++.+++.++.+..+++..+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444444444444444444444444555555555444444444444445555555554444444444444444555555
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|.+..+++..++.+++|++|++++|.+++..+..++.+++|+.|++++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence 55544444444444444555555554444444444444444444444444
No 54
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.84 E-value=1.9e-19 Score=109.50 Aligned_cols=126 Identities=25% Similarity=0.353 Sum_probs=93.1
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
.+.+++.++++..++.. ..++++.|++++|+++.+++..|..+++|+.+++++|.+....+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35677777777766432 235778888888887777766677777888888888877777666667777888888888
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|.+++.++..+..+++|+.|++++|.++++.+..+..+++|+.+++++|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 8888777766777778888888888877776666677777888887765
No 55
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.83 E-value=1.2e-20 Score=111.77 Aligned_cols=131 Identities=22% Similarity=0.269 Sum_probs=114.3
Q ss_pred cCCCCccEEEccCCccc-cccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 8 RRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
...++++.+++++|.+. +..+..+..+++++.|++++|.++.. ..+..+++|+.+++++|.+....|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34578999999999998 44456788999999999999999987 5788899999999999999886677787899999
Q ss_pred EEEcCCCcCcccC-hhhcCCCCCCCEEEcCCCCccccCC---CCcCCCCceeEEEccC
Q psy8880 87 TLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTP---DVIGDNVTITTLTLSG 140 (141)
Q Consensus 87 ~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~l~l~~ 140 (141)
++++++|.+.+.+ +..+..+++|+.|++++|.+++..+ ..++.+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999875 3668899999999999999998855 4788999999999864
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=9.7e-20 Score=122.91 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=115.0
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|++|++++|.+....+..+..+++|++|++++|.++..++..|..+++|+.|++++|.+....+..+..+++|
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 36889999999999999999888889999999999999999999988889999999999999999998876677889999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|++++|.+...++..+..+++|+.|++++|.+++.. ++.+++|+.+++++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCS
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccc
Confidence 99999999999998888899999999999999988763 34445555555444
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=128.41 Aligned_cols=135 Identities=25% Similarity=0.328 Sum_probs=105.2
Q ss_pred hcCCCCccEEEccCCccccccc-cccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccc-eecchhhcCCCC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-AVSGASLAHLSN 84 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~ 84 (141)
+..+++|+.|++++|.+....+ ..+..+++|+.+++++|.+....+..|..+++|+.+++++|.+. ...|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 5566666666666666665543 45667777888888888777777777777888888888888876 344667778888
Q ss_pred cCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 888888888888887777888889999999988888887778888888999988876
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=6.8e-20 Score=128.23 Aligned_cols=131 Identities=25% Similarity=0.403 Sum_probs=85.8
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
+++++|++++|.+....+..+..+++|++|++++|+++..++..|..+++|++|++++|.+....+..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46777777777777666666777777777777777777766666667777777777777776666666667777777777
Q ss_pred CCCcCcccC-hhhcCCCCCCCEEEcCCCC-ccccCCCCcCCCCceeEEEccCC
Q psy8880 91 SHNFLRALT-QDLITPLKSLQELRLDDND-ISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 91 ~~n~l~~~~-~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|.+.+.. +..++.+++|+.|++++|. +..+.+..++.+++|+.|++++|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 777666532 2345666666666666665 34443455666666666666543
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.3e-20 Score=129.79 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=124.3
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCcccee-cchhhcCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV-SGASLAHL 82 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~ 82 (141)
|..|.++++|++|++++|++....+..|..+++|++|++++|.++..++..|..+++|++|++++|.+... .+..+..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 46789999999999999999999888999999999999999999999988899999999999999999864 35678899
Q ss_pred CCcCEEEcCCCc-CcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 83 SNLTTLDLSHNF-LRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 83 ~~L~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|++|++++|. +..+++..+..+++|+.|++++|.+++..+..++.+++|+.+++++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 999999999998 67777777899999999999999999988999998888888887654
No 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.3e-19 Score=124.26 Aligned_cols=131 Identities=24% Similarity=0.378 Sum_probs=96.6
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccc-eeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEE
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 89 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 89 (141)
+++++|++++|.+....+..+..+++|++|++++|.+. .+++..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56778888888877776777777788888888877775 55566677777888888888877777677777777888888
Q ss_pred cCCCcCcccCh--hhcCCCCCCCEEEcCCCCccccCCCC-cCCCCceeEEEccCC
Q psy8880 90 LSHNFLRALTQ--DLITPLKSLQELRLDDNDISMVTPDV-IGDNVTITTLTLSGE 141 (141)
Q Consensus 90 l~~n~l~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~n 141 (141)
+++|.+.+..+ ..++.+++|+.|++++|.+++..|.. ++.+++|+.|++++|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 88877776333 23667777888888877777765554 677777777777765
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.9e-19 Score=127.41 Aligned_cols=137 Identities=26% Similarity=0.308 Sum_probs=123.4
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCccc-ceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
..+..+.+++.++++.|.+....+..+..++.++.+++++|.+ ....+..|..+++|+.|++++|++....|..+.+++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 3567788888889999988888888888899999999999874 455667888999999999999999999899999999
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCC-CceeEEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN-VTITTLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~~L~~l~l~~n 141 (141)
+|+.|++++|.+.++++..+..+++|+.|++++|.+++..|..+..+ ++|+.|++++|
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999999999889999999999999999999999999988 58999999987
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.4e-19 Score=128.08 Aligned_cols=133 Identities=23% Similarity=0.297 Sum_probs=116.7
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|+.|++++|.+....+..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.+...++..+..+++|
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 46789999999999999999988889999999999999999999998889999999999999999998877778899999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|++++|.+.+.++..++.+++|+.|++++|.+++.. ++.+++|+.+++++|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 99999999999999888999999999999999998863 344455555555443
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=4.1e-20 Score=132.20 Aligned_cols=136 Identities=24% Similarity=0.338 Sum_probs=73.6
Q ss_pred hhcCCCCccEEEccCCccc--cccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc-------
Q psy8880 6 TVRRLSSLKVLSIAHNQFS--SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG------- 76 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------- 76 (141)
.|..+++|+.+++++|.+. ...+..+..+++|+.+++++|+++.+++..|..+++|+.+++++|.+....+
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 4555556666666655554 2233445555556666666655555555555555555566655555544311
Q ss_pred -hhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 77 -ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 77 -~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
..+..+++|+.+++++|.+..+++..+..+++|+.|++++|.++++.+..+..+++|+.+++++|
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 12444555555555555555555544555555555555555555554555555555555555544
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=6.5e-19 Score=116.51 Aligned_cols=132 Identities=28% Similarity=0.435 Sum_probs=65.2
Q ss_pred hhcCCCCccEEEccCCcccc--ccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
.+.++++|+.+++++|.+.. ..+..+..+++|+.+++++|.++.++... .++|+.+++++|.+....+..+..++
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCC
Confidence 35555666666666655542 33344455555555555555444433211 13445555555555444444455555
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|+.|++++|.+.+.++..+..+++|+.|++++|.++.+ |..+..+++|+.+++++|
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC
Confidence 555555555555555444444555555555555555433 334445555555555443
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.81 E-value=7.2e-20 Score=111.31 Aligned_cols=131 Identities=23% Similarity=0.253 Sum_probs=113.0
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCC-CccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCC
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLD-KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 84 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 84 (141)
.+.++.+|+.|++++|.+..+ +. +..+. +++.|++++|.++.+ ..+..+++|+.+++++|.+....+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466788999999999999976 33 55554 999999999999988 47888999999999999999887666788999
Q ss_pred cCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCCC----CcCCCCceeEEEccCC
Q psy8880 85 LTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPD----VIGDNVTITTLTLSGE 141 (141)
Q Consensus 85 L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~L~~l~l~~n 141 (141)
|+++++++|.+..++. ..+..+++|+.|++++|.++.. +. .+..+++|+.+++++|
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 9999999999988775 4578999999999999999876 54 4888999999998765
No 66
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=4.2e-19 Score=109.35 Aligned_cols=111 Identities=24% Similarity=0.351 Sum_probs=103.4
Q ss_pred CccEEEccCCcccccccc-ccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 12 SLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
+++.|++++|.+....+. .+..+++|++|++++|.++.+.+..|..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 899999999999988764 5889999999999999999998889999999999999999999998888999999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
++|.+++..+..+..+++|+.|++++|++++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999999888899999999999999998753
No 67
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=7.3e-19 Score=111.01 Aligned_cols=125 Identities=29% Similarity=0.331 Sum_probs=112.5
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
-+.++.+++.+..++... .++++.|++++|.++.+.+..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356888888888875532 38999999999999999888899999999999999999888777889999999999999
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|.++.+++..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC
Confidence 999999988889999999999999999976 778899999999999987
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=1.5e-19 Score=118.81 Aligned_cols=133 Identities=21% Similarity=0.199 Sum_probs=75.3
Q ss_pred cCCCCccEEEccCCccccccccccCCC-----CCccEEeccCcccceeCchhhccCCCCCEEECCCCcccee--cchhh-
Q psy8880 8 RRLSSLKVLSIAHNQFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV--SGASL- 79 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~- 79 (141)
..+++|++|++++|.+... +..+..+ ++|++|++++|+++..++..|..+++|+.+++++|.+... .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5566666666666666555 3334443 5666666666666666655666666666666666664332 11122
Q ss_pred -cCCCCcCEEEcCCCcCcccC---hhhcCCCCCCCEEEcCCCCccccCC-CCcCCCCceeEEEccCC
Q psy8880 80 -AHLSNLTTLDLSHNFLRALT---QDLITPLKSLQELRLDDNDISMVTP-DVIGDNVTITTLTLSGE 141 (141)
Q Consensus 80 -~~~~~L~~l~l~~n~l~~~~---~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n 141 (141)
..+++|++|++++|.+...+ ...+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 45566666666666665322 2333455666666666666666442 34445566666666654
No 69
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.80 E-value=1.5e-18 Score=105.53 Aligned_cols=113 Identities=30% Similarity=0.426 Sum_probs=104.5
Q ss_pred CCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEE
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 89 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 89 (141)
.++++.|++++|.+....+..+..+++|+.|++++|.++.+++..|..+++|+.+++++|.+....+..+..+++|+.++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999999998888889999999999999999999888889999999999999999988777788999999999
Q ss_pred cCCCcCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 90 LSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 90 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
+++|.+..+++..+..+++|+.+++++|++++.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999999988788999999999999998764
No 70
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=107.54 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=103.0
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.|++++|.+..++ ..+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 58999999999999775 68999999999999999999999889999999999999999999998888999999999999
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
++|.+..+++..+..+++|+.|++++|++..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999999889999999999999998754
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=3.6e-18 Score=112.94 Aligned_cols=134 Identities=25% Similarity=0.354 Sum_probs=83.1
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
+..+.++++|+.+++++|.+..++... .++|+.+++++|.++...+..|..+++|+.|++++|.+....+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 345677777777777777776653322 25666666666666666655666666666666666666666555566666
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCC------CCceeEEEccCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD------NVTITTLTLSGE 141 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~------~~~L~~l~l~~n 141 (141)
+|+.+++++|.+..++.. +..+++|+.|++++|.++++.+..+.. .+.++.+++++|
T Consensus 241 ~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp TCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 666666666666655443 556666666666666666654444432 244555555554
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=128.52 Aligned_cols=133 Identities=22% Similarity=0.271 Sum_probs=111.8
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCc-ccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 87 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 87 (141)
-.++++.|++++|.+....+..|..+++|+.|++++| .+..+++..|..+++|++|++++|.+....|..+..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3578899999999999888888999999999999988 455666778888999999999999998888888889999999
Q ss_pred EEcCCCcCcccCh--hhcCCCCCCCEEEcCCCCccccCC-CCcCCCCceeEEEccCC
Q psy8880 88 LDLSHNFLRALTQ--DLITPLKSLQELRLDDNDISMVTP-DVIGDNVTITTLTLSGE 141 (141)
Q Consensus 88 l~l~~n~l~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n 141 (141)
|++++|.+.+..+ ..++.+++|+.|++++|.+++..+ ..++++++|+.|++++|
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 9999998887433 337888999999999998887654 56888999999998875
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.2e-18 Score=113.18 Aligned_cols=61 Identities=28% Similarity=0.428 Sum_probs=25.1
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCcc
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 71 (141)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.++..+ .+..+++|+.|++++|.+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCC
Confidence 3344444444444444444322 344444444444444443332 233333444444444333
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=121.17 Aligned_cols=135 Identities=18% Similarity=0.291 Sum_probs=88.5
Q ss_pred hhhhcCCCCccEEEccCCcccccc--ccccCCCCCccEEeccCcccce-eCchhhccCCCCCEEECCCCccceecchhhc
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVR--RGALAGLDKLTSLSCHHNQIDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLA 80 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 80 (141)
|..+..+++|+.|++++|.+..+. +..+..+++|+.|++++|.++. ++...+..+++|+.+++++|.+....+..+.
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 445555666666666666655422 2345556666666666666655 4443455556666666666665544333222
Q ss_pred CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|+.|++++|.++.++.. +..+++|+.|++++|.++.+.+..+..+++|+.+++++|
T Consensus 421 --~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp --TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 5778888888888766655 448889999999999988775555888899999999886
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=2.1e-18 Score=112.48 Aligned_cols=124 Identities=30% Similarity=0.477 Sum_probs=56.8
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.++..+ .+..+++|+.|++++|.+... ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 4455555555555555555433 455555555555555554432 244444555555555544433 1233444444
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 444444444443 123344444444444444444322 33444444444433
No 76
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.7e-18 Score=111.39 Aligned_cols=125 Identities=30% Similarity=0.438 Sum_probs=85.1
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|+.|++++|.+....+ +..+++|+.|++++|+++.++. +.. ++|+.|++++|.+... ..+..+++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccc
Confidence 45566667777777776666544 6666777777777776666543 222 6677777777766654 246677777
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++|.+++++ .+..+++|+.|++++|.+++. ..+..+++|+.+++++|
T Consensus 131 ~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 131 EILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred cEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 78888877777764 366777788888888877776 55777777777777654
No 77
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.6e-19 Score=128.53 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=111.3
Q ss_pred hhhhhcCCCCccEEEccCCccccc-----------------cccccC--CCCCccEEeccCcccceeCchhhccCCCCCE
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSV-----------------RRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 63 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 63 (141)
+|..+.++++|++|++++|.+.+. .|..+. .+++|++|++++|.+....|..|..+++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 577888899999999999988883 466777 8899999999999888777778888899999
Q ss_pred EECCCCc-cce-ecchhhcCC------CCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCCCCcCCCCcee
Q psy8880 64 LDLAHNR-IVA-VSGASLAHL------SNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDVIGDNVTIT 134 (141)
Q Consensus 64 l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 134 (141)
|++++|. +.. ..|..++.+ ++|++|++++|.++.++. ..++.+++|+.|++++|.+++..| .++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999987 765 456666554 888899999988886655 257888889999998888886666 777888888
Q ss_pred EEEccCC
Q psy8880 135 TLTLSGE 141 (141)
Q Consensus 135 ~l~l~~n 141 (141)
.|++++|
T Consensus 357 ~L~L~~N 363 (636)
T 4eco_A 357 SLNLAYN 363 (636)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 8888775
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=3.1e-18 Score=112.44 Aligned_cols=125 Identities=30% Similarity=0.453 Sum_probs=101.9
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+++|++|++++|.+.... .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+....+ +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence 778888888888888888763 57788888888888888887653 7778888888888888877644 77788888
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.|++++|.+.+.++ +..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 155 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205 (308)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS
T ss_pred EEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC
Confidence 88888888887765 7788888899998888887644 778888888888876
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=4.3e-19 Score=109.65 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=113.0
Q ss_pred cCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCE
Q psy8880 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 87 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 87 (141)
..+++|+.+++++|.+..++ .+..+++|+.|++++|.++..+ .+..+++|+++++++|.+....+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678999999999999764 5888999999999999877654 6788999999999999998766778889999999
Q ss_pred EEcCCCcCcccChhhcCCCCCCCEEEcCCCC-ccccCCCCcCCCCceeEEEccCC
Q psy8880 88 LDLSHNFLRALTQDLITPLKSLQELRLDDND-ISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 88 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|++++|.+.+..+..+..+++|+.|++++|. ++.+ + .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC
Confidence 9999999998777778999999999999998 7776 4 6899999999999886
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.6e-18 Score=113.20 Aligned_cols=129 Identities=23% Similarity=0.308 Sum_probs=106.3
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhc-cCCCCCEEECCCCccceecchhhcCCCCcCE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR-ALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 87 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 87 (141)
.+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+. .+++|+.+++++|.+..... ...+++|+.
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~ 195 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKT 195 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCE
Confidence 356677777777777777777788888999999999998887766654 68899999999998887732 234788999
Q ss_pred EEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 88 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 88 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|++++|.+.++++. +..+++|+.|++++|.++.+ |..+..+++|+.+++++|
T Consensus 196 L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 196 LDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC
T ss_pred EECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCC
Confidence 99999999988776 78889999999999999976 667888999999999887
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.4e-18 Score=115.05 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=27.0
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCccccee
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 50 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 50 (141)
..|.++++|++|++++|.+....+..+..+++|++|++++|.++.+
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 117 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC
T ss_pred hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc
Confidence 3456666666666666666665555555566666665555555443
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=2.7e-18 Score=113.71 Aligned_cols=126 Identities=21% Similarity=0.400 Sum_probs=81.9
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.|++++|.+....+..+..+++|+.|++++|.++.+.+..|..+++|++|++++|.+...++..+ ++|+++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 466777777777776666667777777777777777777666666677777777777777665433222 56777777
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccc--cCCCCcCCCCceeEEEccC
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISM--VTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~ 140 (141)
++|.+..+++..+..+++|+.|++++|.++. ..+..++.+ +|+.+++++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 7777776666666777777777777776643 444555554 455555444
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=2.4e-18 Score=120.96 Aligned_cols=135 Identities=20% Similarity=0.277 Sum_probs=84.6
Q ss_pred hhhhcCCCCccEEEccCCcccccc--ccccCCCCCccEEeccCcccce-eCchhhccCCCCCEEECCCCccceecchhhc
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVR--RGALAGLDKLTSLSCHHNQIDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLA 80 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 80 (141)
|..+.++++|+.|++++|++..+. +..+..+++|+.+++++|.++. ++...+..+++|+.+++++|.+....+..+.
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 344555555555555555555432 2334555555666665555554 4444455555666666666655433332221
Q ss_pred CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|+.|++++|.++.++... ..+++|+.|++++|.++.+.+..+..+++|+.+++++|
T Consensus 450 --~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 450 --PKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp --TTCSEEECCSSCCCCCCTTT-TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred --CcCCEEECCCCcCcccChhh-cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 57778888888777776653 47888888888888888765555888888888888876
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.9e-18 Score=110.71 Aligned_cols=125 Identities=30% Similarity=0.418 Sum_probs=112.1
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+++|+.|++++|.+.... .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+... ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 889999999999999998863 4889999999999999999863 678899999999999999877 4678899999
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.|++++|.+.+.++ +..+++|+.|++++|.++++ + .+..+++|+.|++++|
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEE
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCC
Confidence 99999999999876 78999999999999999987 3 4889999999999875
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=3.7e-18 Score=118.27 Aligned_cols=129 Identities=23% Similarity=0.308 Sum_probs=106.4
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhc-cCCCCCEEECCCCccceecchhhcCCCCcCE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR-ALSTLSHLDLAHNRIVAVSGASLAHLSNLTT 87 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~ 87 (141)
.+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+. .+++|+.|++++|.+....+ ...+++|+.
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 195 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKT 195 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCE
Confidence 356777788888888877777788888999999999988887766665 68899999999998887733 335888999
Q ss_pred EEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 88 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 88 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
|++++|.++++++. +..+++|+.|++++|.++++ |..+..+++|+.+++++|
T Consensus 196 L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 196 LDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC
T ss_pred EECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC
Confidence 99999999988876 78889999999999999986 667888999999999886
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=3.2e-18 Score=113.77 Aligned_cols=127 Identities=28% Similarity=0.421 Sum_probs=105.8
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+++|+.|++++|.+....+ +..+++|+.+++++|.++.++ .+..+++|+.+++++|.+... ..+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 6677888888888888877654 778888888888888887763 577788999999999888776 3477888999
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+++++|.+.+..+..+..+++|+.|++++|.+++..+ +..+++|+.+++++|
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence 99999999988888878889999999999999988755 788899999999887
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3.9e-18 Score=119.87 Aligned_cols=126 Identities=27% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++++.|++++|.+....+..+..+++|++|++++|.++.+.+..|..+++|++|++++|.+...+.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 5666666666666666656666666666666666666666665666666666666666666654332 5666666666
Q ss_pred CCCcCcccC-hhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 91 SHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 91 ~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|.+.+++ +..++.+++|+.|++++|.+++.....+..+ .|+.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~ 178 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDL 178 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeec
Confidence 666666654 3446666666666666666654322222222 236666554
No 88
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=1.1e-18 Score=127.51 Aligned_cols=137 Identities=22% Similarity=0.260 Sum_probs=101.0
Q ss_pred hhhhhcCCCCccEEEccCCcccc-----------------ccccccC--CCCCccEEeccCcccceeCchhhccCCCCCE
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSS-----------------VRRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 63 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~-----------------~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 63 (141)
+|..+.++++|+.|++++|.+.+ ..|..++ .+++|+.|++++|.+....|..|..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67778888888888888888877 2355555 7888888888888877666667888888888
Q ss_pred EECCCCc-cce-ecchhhcC-------CCCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCCCCcCCCCce
Q psy8880 64 LDLAHNR-IVA-VSGASLAH-------LSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDVIGDNVTI 133 (141)
Q Consensus 64 l~l~~~~-~~~-~~~~~~~~-------~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 133 (141)
|++++|. +.. ..|..+.. +++|+.|++++|.+..++. ..++.+++|+.|++++|.++.+ | .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-E-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC-C-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc-h-hhcCCCcc
Confidence 8888887 665 34544443 3478888888888886554 2577788888888888877743 5 67777778
Q ss_pred eEEEccCC
Q psy8880 134 TTLTLSGE 141 (141)
Q Consensus 134 ~~l~l~~n 141 (141)
+.|++++|
T Consensus 598 ~~L~Ls~N 605 (876)
T 4ecn_A 598 TDLKLDYN 605 (876)
T ss_dssp SEEECCSS
T ss_pred eEEECcCC
Confidence 87777765
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2.8e-19 Score=117.54 Aligned_cols=132 Identities=21% Similarity=0.216 Sum_probs=111.4
Q ss_pred CCCCccEEEccCCcccccccccc--CCCCCccEEeccCcccceeCchhhccC-----CCCCEEECCCCccceecchhhcC
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGAL--AGLDKLTSLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAH 81 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~~~~~ 81 (141)
++++|++|++++|.+.+..+..+ ..+++|++|++++|+++.. +..+..+ ++|++|++++|.+....+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 79999999999999997666655 8899999999999999988 4566665 89999999999999988889999
Q ss_pred CCCcCEEEcCCCcCcccC--hhhc--CCCCCCCEEEcCCCCcccc---CCCCcCCCCceeEEEccCC
Q psy8880 82 LSNLTTLDLSHNFLRALT--QDLI--TPLKSLQELRLDDNDISMV---TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 82 ~~~L~~l~l~~n~l~~~~--~~~~--~~~~~L~~l~l~~n~~~~~---~~~~~~~~~~L~~l~l~~n 141 (141)
+++|++|++++|.+.+.. +..+ ..+++|+.|++++|.+++. ....+..+++|+.|++++|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 999999999999976641 2223 7899999999999999843 2244467889999999986
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.1e-18 Score=119.54 Aligned_cols=59 Identities=32% Similarity=0.398 Sum_probs=29.9
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccc
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 72 (141)
+|+.|++++|.+....+..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence 45555555555555544455555555555555555544333 444444444444444443
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=8.7e-18 Score=118.96 Aligned_cols=127 Identities=28% Similarity=0.424 Sum_probs=64.4
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc---------
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG--------- 76 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------- 76 (141)
.+..+++|+.|++++|.+....+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.....
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDINGLVHLPQLES 135 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSE
T ss_pred HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCccccCCCccCE
Confidence 35556666666666666655543 455555555555555555432 34444555555555554443310
Q ss_pred -----------hhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 77 -----------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 77 -----------~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
..+..+++|+.|++++|.+.+.++ +..+++|+.|++++|.++++ ..+..+++|+.|++++
T Consensus 136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 206 (605)
T ss_dssp EECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCS
T ss_pred EECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccC
Confidence 234444455555555555544433 44555555555555555543 2355555555555554
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=119.51 Aligned_cols=131 Identities=26% Similarity=0.306 Sum_probs=100.2
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|..+. +++++|++++|.+....+..+..+++|++|++++|+++...+..|..+++|++|++++|.+..++.. .+
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l 89 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PT 89 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CC
T ss_pred cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---cc
Confidence 444443 6888888888888888777788888888888888888888777888888888888888888766433 67
Q ss_pred CCcCEEEcCCCcCcccC-hhhcCCCCCCCEEEcCCCCccccCCCCcCCCCce--eEEEccCC
Q psy8880 83 SNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDVIGDNVTI--TTLTLSGE 141 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L--~~l~l~~n 141 (141)
++|++|++++|.+.+++ +..++.+++|++|++++|.+++. .+..+++| +.+++++|
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEEC
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecc
Confidence 88888888888888743 45678888888888888887763 34555555 77777654
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=126.62 Aligned_cols=125 Identities=24% Similarity=0.283 Sum_probs=90.3
Q ss_pred hhhhcCCCCccEEEccCCc-cccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecch--hhc
Q psy8880 4 WCTVRRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA--SLA 80 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~ 80 (141)
+..|.++++|++|++++|. ...+.+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+. .+.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 4567778888888888874 3444466777888888888888888887777788888888888888877664333 367
Q ss_pred CCCCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCCCCcC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDVIG 128 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 128 (141)
.+++|++|++++|.+.+..+ ..++.+++|+.|++++|.+++..+..+.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 77888888888887777654 4567778888888877777665444433
No 94
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=7.8e-18 Score=119.96 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=68.4
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCC-------CCCEEECCCCccceecchhhc-
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS-------TLSHLDLAHNRIVAVSGASLA- 80 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-------~l~~l~l~~~~~~~~~~~~~~- 80 (141)
.+++|+.|++++|.+..+++..+..+++|+.|++++|.++.++...+.... +|+.|++++|.+..+ |..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-Chhhhh
Confidence 444555555555555544444444455555555555555544443333222 555555555555533 33333
Q ss_pred -CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEc------CCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 81 -HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL------DDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 -~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l------~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+++|+.|++++|.+.+++. .+..+++|+.|++ ++|.+.+..|..++.+++|+.|++++|
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 55566666666666655332 2445556666655 334445555555555666666666554
No 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=3.1e-18 Score=103.25 Aligned_cols=119 Identities=27% Similarity=0.262 Sum_probs=105.9
Q ss_pred chhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc-hhhc
Q psy8880 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLA 80 (141)
Q Consensus 2 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~ 80 (141)
.+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+..... ..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 3666788899999999999999987 678899999999999999998666677779999999999999988643 6788
Q ss_pred CCCCcCEEEcCCCcCcccCh---hhcCCCCCCCEEEcCCCCcccc
Q psy8880 81 HLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
.+++|+++++++|.+...++ ..+..+++|+.|++++|.+...
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999999999999887 5689999999999999988776
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8.1e-18 Score=108.25 Aligned_cols=125 Identities=25% Similarity=0.393 Sum_probs=110.1
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|+.|++++|.+..+. .+..+++|+.|++++|+++.+++ +..+++|+.|++++|.+....+ +.. ++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L 108 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACL 108 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSC
T ss_pred chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Ccc
Confidence 4667889999999999999874 58889999999999999998876 8889999999999999987643 223 899
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++|.+++.+ .+..+++|+.|++++|.+++. + .++.+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 109 SRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred cEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 99999999999875 388999999999999999987 3 6889999999999987
No 97
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.7e-18 Score=125.52 Aligned_cols=135 Identities=21% Similarity=0.201 Sum_probs=104.4
Q ss_pred hhhhhc--CCCCccEEEccCCccccccccccCCCCCccEEeccCcc-cce-eCchhhcc-------CCCCCEEECCCCcc
Q psy8880 3 IWCTVR--RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDV-LEDHSFRA-------LSTLSHLDLAHNRI 71 (141)
Q Consensus 3 ~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~-~~~~~~~~-------~~~l~~l~l~~~~~ 71 (141)
+|..+. ++++|+.|++++|.+....|..+..+++|+.|++++|+ ++. ..|..+.. +++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 677766 89999999999998877777888889999999999887 775 33333433 44888888888888
Q ss_pred ceecch--hhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCc-eeEEEccCC
Q psy8880 72 VAVSGA--SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT-ITTLTLSGE 141 (141)
Q Consensus 72 ~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-L~~l~l~~n 141 (141)
..+ |. .+..+++|+.|++++|.+..++ .++.+++|+.|++++|.++. .|..+..+++ |+.|++++|
T Consensus 561 ~~i-p~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 561 EEF-PASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CBC-CCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSC-CCTTSCEECTTCCEEECCSS
T ss_pred Ccc-CChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCcccc-chHHHhhccccCCEEECcCC
Confidence 844 55 7888888888888888888665 57778888888888888774 4666777777 888887765
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.3e-17 Score=116.03 Aligned_cols=117 Identities=30% Similarity=0.381 Sum_probs=96.1
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|+.|++++|.+... +.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+....+ +..+++|
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 566777888888888887775 3477888899999998888877 367889999999999999988765 8899999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN 130 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 130 (141)
+.|++++|.+.+++ .+..+++|+.|++++|.+++.....+..+
T Consensus 178 ~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 178 QNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp CEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence 99999999999874 37899999999999999887644443333
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=114.09 Aligned_cols=130 Identities=26% Similarity=0.251 Sum_probs=68.0
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccce---eCc-hhhccCCCCCEEECCCCccceecch---hhcC
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV---LED-HSFRALSTLSHLDLAHNRIVAVSGA---SLAH 81 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---~~~-~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~ 81 (141)
.+++|++|++++|.+....+..+..+++|++|++++|++.. ... ..+..+++|++|++++|.+...... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 45555566666665555555555555666666666655432 111 1123455566666666655433211 2344
Q ss_pred CCCcCEEEcCCCcCcccChhhcCCC---CCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 82 LSNLTTLDLSHNFLRALTQDLITPL---KSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 82 ~~~L~~l~l~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+++|++|++++|.+.+..+..+..+ ++|+.|++++|.++.+ |..+. ++|+.|++++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCC
Confidence 5666666666666666533333333 4666666666666644 33332 45666666654
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=9.4e-18 Score=110.52 Aligned_cols=133 Identities=24% Similarity=0.207 Sum_probs=85.0
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecch---------
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA--------- 77 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--------- 77 (141)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+ +..+++|++|++++|.+....+.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~ 107 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence 4445567777777777766666666667777777777776665543 55666666666666665543210
Q ss_pred -------hhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCc-CCCCceeEEEccCC
Q psy8880 78 -------SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI-GDNVTITTLTLSGE 141 (141)
Q Consensus 78 -------~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~n 141 (141)
....+++|+.+++++|.+...++..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 01124556677777777777666566667777777777777777655554 35677777777765
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=2.4e-17 Score=109.54 Aligned_cols=125 Identities=28% Similarity=0.443 Sum_probs=83.5
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEE
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l 88 (141)
.+++|+.+++++|.+....+ +..+++|+.+++++|.++..++ +..+++|+.+++++|.+... ..+..+++|+.+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 34444444444444443322 5556677777777777666554 56677777777777776654 346677777777
Q ss_pred EcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 89 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 89 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++++|.+.+.+ .+..+++|+.|++++|.+++..+..++.+++|+.+++++|
T Consensus 271 ~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 271 NVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred EccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 78777777763 3567778888888888887776777777888888888775
No 102
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.73 E-value=6.3e-17 Score=97.82 Aligned_cols=107 Identities=27% Similarity=0.373 Sum_probs=94.5
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
.+.++++++.+..++.. + .++++.|++++|.++.+++..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 47899999999887543 2 37899999999999999888899999999999999999988877888999999999999
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
|.+..+++..+..+++|+.|++++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999988889999999999999988654
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.73 E-value=5.6e-17 Score=98.06 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=94.3
Q ss_pred CccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcC
Q psy8880 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115 (141)
Q Consensus 36 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~ 115 (141)
..+.+++++++++.++... .+.++.|++++|.+....+..+..+++|++|++++|.++.+++..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999999887532 3789999999999999988889999999999999999999999888999999999999
Q ss_pred CCCccccCCCCcCCCCceeEEEccCC
Q psy8880 116 DNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 116 ~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|.++++.+..+..+++|+.|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 99999998888999999999999987
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=110.07 Aligned_cols=132 Identities=22% Similarity=0.262 Sum_probs=76.9
Q ss_pred hhhcCCCCccEEEccCCcccc---ccc-cccCCCCCccEEeccCcccceeCch---hhccCCCCCEEECCCCccceecch
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSS---VRR-GALAGLDKLTSLSCHHNQIDVLEDH---SFRALSTLSHLDLAHNRIVAVSGA 77 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~---~~~-~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~l~~l~l~~~~~~~~~~~ 77 (141)
..+..+++|++|++++|++.. ..+ ..+..+++|++|++++|+++.++.. .+..+++|+.|++++|.+....|.
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 455666667777777766543 111 1234566667777776666543321 234556677777777766665444
Q ss_pred hhcCC---CCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 78 SLAHL---SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 78 ~~~~~---~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+..+ ++|++|++++|.++.++.. +. ++|+.|++++|.++++ |. +..+++|+.|++++|
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 44443 4666777777766655443 21 5666777777766664 22 455666666666665
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=1.2e-16 Score=110.21 Aligned_cols=125 Identities=30% Similarity=0.418 Sum_probs=69.6
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+++|+.|++++|.+....+ +..+++|+.|++++|+++..++ +..+++|+.+++++|.+....+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 3344444444444444444322 4445555555555555554432 4455556666666665554433 44556666
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+++++|.+.+.+ .+..+++|+.|++++|.+++..| +..+++|+.+++++|
T Consensus 335 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 335 RLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred EeECCCCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 6666666665552 35566677777777777666644 666677777776654
No 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=1.4e-16 Score=109.77 Aligned_cols=125 Identities=31% Similarity=0.453 Sum_probs=78.1
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.++..++ +..+++|+.+++++|.+....+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 4445555555555555555433 5556666666666666655443 5556666666666666655433 55666677
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.|++++|.+.+.++ +..+++|+.|++++|.+++. ..+..+++|+.+++++|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC
Confidence 77777776666654 45667777777777777665 35677777777777765
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.7e-17 Score=98.13 Aligned_cols=113 Identities=26% Similarity=0.289 Sum_probs=99.5
Q ss_pred chhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceec-chhhc
Q psy8880 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLA 80 (141)
Q Consensus 2 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~ 80 (141)
.+|..+..+++|+.|++++|.+... ..+..+++|+.+++++|.++...+..+..+++|+.+++++|.+.... +..+.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 3567788999999999999999987 57889999999999999999866767778999999999999998753 46788
Q ss_pred CCCCcCEEEcCCCcCcccCh---hhcCCCCCCCEEEcCC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDD 116 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~~ 116 (141)
.+++|+++++++|.+++.++ ..+..+++|+.|++++
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999999999887 5688899999998753
No 108
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.72 E-value=1.2e-16 Score=96.99 Aligned_cols=107 Identities=27% Similarity=0.379 Sum_probs=93.4
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 13 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
-+.++++++.+..++.. + .++++.|++++|+++.+++..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36889999999887553 3 37899999999999999888899999999999999999988777788899999999999
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCcccc
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISMV 122 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 122 (141)
|.+..+++..+..+++|+.|++++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999888788999999999999988764
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.71 E-value=1.8e-16 Score=96.18 Aligned_cols=101 Identities=22% Similarity=0.347 Sum_probs=63.4
Q ss_pred cEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCC
Q psy8880 38 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117 (141)
Q Consensus 38 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 117 (141)
+.+++++++++.++.. + .+.++.|++++|.+....+..+..+++|+.|++++|.++++++..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566666666655542 2 256666666666666665566666666666666666666666655566666666666666
Q ss_pred CccccCCCCcCCCCceeEEEccCC
Q psy8880 118 DISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 118 ~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.++++.+..++.+++|+.|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 666665555666666666666655
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=9.6e-18 Score=110.99 Aligned_cols=139 Identities=21% Similarity=0.170 Sum_probs=75.2
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCc-cccee-CchhhccCCCCCEEECCCC-cccee-cchh
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVL-EDHSFRALSTLSHLDLAHN-RIVAV-SGAS 78 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~-~~~~~~~~~~l~~l~l~~~-~~~~~-~~~~ 78 (141)
++..+..+++|++|++++|.+....+..+..+++|++|++++| .++.. .+..+..+++|+.|++++| .++.. .+..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 4455666677777777777666555555666666777777666 45432 2223455666666666666 55432 2334
Q ss_pred hcCCC-CcCEEEcCCC--cCc-ccChhhcCCCCCCCEEEcCCCC-ccccCCCCcCCCCceeEEEccCC
Q psy8880 79 LAHLS-NLTTLDLSHN--FLR-ALTQDLITPLKSLQELRLDDND-ISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 79 ~~~~~-~L~~l~l~~n--~l~-~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+..++ +|++|++++| .++ ...+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 44555 5666666665 232 1112233445556666665555 44433444555555555555543
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.5e-16 Score=112.05 Aligned_cols=122 Identities=23% Similarity=0.274 Sum_probs=104.6
Q ss_pred CccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcC
Q psy8880 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91 (141)
Q Consensus 12 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 91 (141)
.|+.|++++|.+..++ . +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..+ | .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence 5889999999999874 3 8899999999999999997755 888999999999999999885 4 78899999999999
Q ss_pred CCcCcccC-hhhcCCCCCCCEEEcCCCCccccCCCC---cCCCCceeEEEc
Q psy8880 92 HNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDV---IGDNVTITTLTL 138 (141)
Q Consensus 92 ~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~L~~l~l 138 (141)
+|.+++.. +..++.+++|+.|++++|.+++..+.. +..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999996 677899999999999999999875432 233778888764
No 112
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=2.5e-16 Score=108.38 Aligned_cols=121 Identities=22% Similarity=0.343 Sum_probs=78.5
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+.++++|+++++++|.+.+.+ .+..+++|+.|++++|.++.++ +..+++|++|++++|.+.... ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcC
Confidence 4556677777777777777652 4666777777777777776653 556677777777777766542 5566777
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
++|++++|.+.+++ ++.+++|+.|++++|.++++ + ++.+++|+.+++++
T Consensus 109 ~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHL 157 (457)
T ss_dssp CEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTT
T ss_pred CEEECCCCcCCeec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCC
Confidence 77777777766653 56666777777776666664 1 44455555555544
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.1e-16 Score=115.50 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=66.1
Q ss_pred ccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCC
Q psy8880 28 RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 107 (141)
Q Consensus 28 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~ 107 (141)
++.+..+..|+.|++++|.+..++... ..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.++. .++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPA-ELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCS-SGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccCh-hhcCCC
Confidence 445556666666777666666555433 3566666667766666633 4556666666777777766665533 356666
Q ss_pred CCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 108 SLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 108 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|++|++++|.++.+ |..++.+++|+.|++++|
T Consensus 294 ~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTS
T ss_pred CCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCC
Confidence 677777766666644 445666666666666665
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.68 E-value=2.4e-19 Score=110.88 Aligned_cols=130 Identities=24% Similarity=0.324 Sum_probs=108.2
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCC
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
+|..+..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+... + .+..+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l-~-~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL-S-GIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCH-H-HHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcC-C-ccccC
Confidence 4558889999999999999998864 68888999999999999987764 566678999999999998875 3 57778
Q ss_pred CCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCCCC----------cCCCCceeEEE
Q psy8880 83 SNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDV----------IGDNVTITTLT 137 (141)
Q Consensus 83 ~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~----------~~~~~~L~~l~ 137 (141)
++|+++++++|.+...+. ..+..+++|+.+++++|.+++..|.. +..+++|+.+|
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 899999999999998765 56889999999999999987765542 67788888876
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=5.2e-16 Score=103.51 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=73.2
Q ss_pred hhhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccc-eeCchhhccCCCCCE-EECCCCccceecchhhc
Q psy8880 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLEDHSFRALSTLSH-LDLAHNRIVAVSGASLA 80 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~ 80 (141)
+|..+ .++++.|++++|+++.++++.|..+++|++|++++|.+. .++...|.++++++. +.+..|++....++.+.
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 44443 257888888888888887778888888888888888874 466667777777664 55566788888777888
Q ss_pred CCCCcCEEEcCCCcCcccChh
Q psy8880 81 HLSNLTTLDLSHNFLRALTQD 101 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~ 101 (141)
.+++|+++++++|.+...++.
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCC
T ss_pred hccccccccccccccccCCch
Confidence 888888888888877665543
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=2.3e-17 Score=111.25 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred cCCCCccEEEccCCcccc----ccccccCCCCCccEEeccCcccceeCchhhcc----C---------CCCCEEECCCCc
Q psy8880 8 RRLSSLKVLSIAHNQFSS----VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA----L---------STLSHLDLAHNR 70 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~----~---------~~l~~l~l~~~~ 70 (141)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++...+..+.. + ++|+.|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455555555555555544 12334444555555555555554332222221 1 455555555555
Q ss_pred ccee-cc---hhhcCCCCcCEEEcCCCcCcc-----cChhhcCCCCCCCEEEcCCCCcc----ccCCCCcCCCCceeEEE
Q psy8880 71 IVAV-SG---ASLAHLSNLTTLDLSHNFLRA-----LTQDLITPLKSLQELRLDDNDIS----MVTPDVIGDNVTITTLT 137 (141)
Q Consensus 71 ~~~~-~~---~~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~~L~~l~l~~n~~~----~~~~~~~~~~~~L~~l~ 137 (141)
+... .+ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++ ...+..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 4311 11 233344455555555555442 11112344455555555555543 22233444444555555
Q ss_pred ccCC
Q psy8880 138 LSGE 141 (141)
Q Consensus 138 l~~n 141 (141)
+++|
T Consensus 251 L~~n 254 (386)
T 2ca6_A 251 LNDC 254 (386)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5443
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.67 E-value=2.5e-15 Score=103.48 Aligned_cols=100 Identities=24% Similarity=0.379 Sum_probs=74.4
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+..+++|++|++++|.+...+ +..+++|++|++++|.++.++ +..+++|+++++++|.+... + +..+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee-c--CCCCCcC
Confidence 5778888899999998888862 777888888888888888763 66788888888888887765 2 6677888
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 117 (141)
+++++++|.+++++ ++.+++|+.|++++|
T Consensus 130 ~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 130 TYLNCARNTLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CEEECTTSCCSCCC---CTTCTTCCEEECTTC
T ss_pred CEEECCCCccceec---cccCCcCCEEECCCC
Confidence 88888888777653 444555555555554
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=2.7e-16 Score=95.44 Aligned_cols=110 Identities=21% Similarity=0.296 Sum_probs=96.5
Q ss_pred CCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecc-hhhcCCCCcCEE
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTL 88 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l 88 (141)
.++|+.|++++|.+... +.+..+++|+.|++++|.++.+++..|..+++|+.+++++|.+..... ..+..+++|+.+
T Consensus 41 ~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 34999999999999987 578899999999999999999987777899999999999999977643 378889999999
Q ss_pred EcCCCcCcccChh---hcCCCCCCCEEEcCCCCccc
Q psy8880 89 DLSHNFLRALTQD---LITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 89 ~l~~n~l~~~~~~---~~~~~~~L~~l~l~~n~~~~ 121 (141)
++++|.+...+.. .+..+++|+.++++.|....
T Consensus 119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999987654 57889999999999987654
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=1.5e-16 Score=105.21 Aligned_cols=139 Identities=24% Similarity=0.227 Sum_probs=109.9
Q ss_pred hhhhhcCCCCccEEEccCC-ccccc-cccccCCCCCccEEeccCc-cccee-CchhhccCC-CCCEEECCCCc--cc-ee
Q psy8880 3 IWCTVRRLSSLKVLSIAHN-QFSSV-RRGALAGLDKLTSLSCHHN-QIDVL-EDHSFRALS-TLSHLDLAHNR--IV-AV 74 (141)
Q Consensus 3 ~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~l~~l~l~~~-~~~~~-~~~~~~~~~-~l~~l~l~~~~--~~-~~ 74 (141)
.+..+..+++|++|++++| .++.. .+..+..+++|+.|++++| .++.. .+..+..++ +|+.|++++|. ++ ..
T Consensus 134 ~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 4567888999999999999 67752 3455778999999999999 88764 244677889 99999999994 44 23
Q ss_pred cchhhcCCCCcCEEEcCCCc-CcccChhhcCCCCCCCEEEcCCCC-ccccCCCCcCCCCceeEEEccCC
Q psy8880 75 SGASLAHLSNLTTLDLSHNF-LRALTQDLITPLKSLQELRLDDND-ISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 75 ~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+..+..+++|+.|++++|. +++.....+..+++|+.|++++|. ++......++.+++|+.|++++|
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 35567789999999999998 666666668899999999999995 33332336788999999999875
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=5.7e-17 Score=108.55 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCccEEEccCCccccccc----cccCCCC-CccEEeccCcccceeCchhhccC-----CCCCEEECCCCcccee
Q psy8880 11 SSLKVLSIAHNQFSSVRR----GALAGLD-KLTSLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAV 74 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~----~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~~~ 74 (141)
++|++|++++|.+....+ +.+..++ +|+.|++++|.++...+..+..+ ++|+.|++++|.+...
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 335555555555544433 3344444 45555555555544433333332 4455555555544433
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.5e-16 Score=114.86 Aligned_cols=118 Identities=23% Similarity=0.235 Sum_probs=100.3
Q ss_pred hhhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCC
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 83 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 83 (141)
+..+..++.|+.|++++|.+..+++. +..+++|+.|++++|.++.++ ..|..+++|+.|++++|.+..+ |..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCC
Confidence 56788999999999999999977554 558999999999999999665 4788999999999999999955 77889999
Q ss_pred CcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCC
Q psy8880 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125 (141)
Q Consensus 84 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 125 (141)
+|++|++++|.++.++.. ++.+++|+.|++++|.+++..|.
T Consensus 294 ~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChH
Confidence 999999999999988766 89999999999999999875443
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4.9e-15 Score=98.02 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=52.9
Q ss_pred CCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC-EEEcCCCcCcccChhhcCCCCCCCEEE
Q psy8880 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT-TLDLSHNFLRALTQDLITPLKSLQELR 113 (141)
Q Consensus 35 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~~L~~l~ 113 (141)
++|+.++++.|+++.++...|.++.+|+.++++.| +..+....|.++++|+ .+.+.. .+..+.+.+|..+++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 34555555555555555555555555555555554 4444444555555555 555554 44555555555555555555
Q ss_pred cCCCCccccCCCCcCCCCceeEEE
Q psy8880 114 LDDNDISMVTPDVIGDNVTITTLT 137 (141)
Q Consensus 114 l~~n~~~~~~~~~~~~~~~L~~l~ 137 (141)
+.+|.++.+.+..|.+|++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 555555555555555555555544
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=7.8e-17 Score=107.90 Aligned_cols=137 Identities=20% Similarity=0.290 Sum_probs=81.6
Q ss_pred hhhcCCC-CccEEEccCCccccccccccCCC-----CCccEEeccCcccceeCchhhc----cC-CCCCEEECCCCccce
Q psy8880 5 CTVRRLS-SLKVLSIAHNQFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFR----AL-STLSHLDLAHNRIVA 73 (141)
Q Consensus 5 ~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~~~~----~~-~~l~~l~l~~~~~~~ 73 (141)
..+..++ +|++|++++|.+....+..+..+ ++|+.|++++|.++...+..+. .+ ++|+.|++++|.+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 5566777 78888888887776655555553 7777777777777766554332 33 677777777777765
Q ss_pred ecchhh----cC-CCCcCEEEcCCCcCcccChhh----cCCCC-CCCEEEcCCCCccccCCC----CcCCC-CceeEEEc
Q psy8880 74 VSGASL----AH-LSNLTTLDLSHNFLRALTQDL----ITPLK-SLQELRLDDNDISMVTPD----VIGDN-VTITTLTL 138 (141)
Q Consensus 74 ~~~~~~----~~-~~~L~~l~l~~n~l~~~~~~~----~~~~~-~L~~l~l~~n~~~~~~~~----~~~~~-~~L~~l~l 138 (141)
..+..+ .. .++|++|++++|.+++..... +...+ +|+.|++++|.+++..+. .+..+ ++|+.|++
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 544332 22 246777777777666433222 23333 666666666666554332 22233 35666666
Q ss_pred cCC
Q psy8880 139 SGE 141 (141)
Q Consensus 139 ~~n 141 (141)
++|
T Consensus 204 s~N 206 (362)
T 3goz_A 204 SAN 206 (362)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=6.9e-15 Score=97.32 Aligned_cols=129 Identities=16% Similarity=0.274 Sum_probs=102.0
Q ss_pred CCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhc---------------------------------
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR--------------------------------- 56 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--------------------------------- 56 (141)
|++|+.+++.+ ++..+.+.+|..+.+|+.++++.+.+..+++..|.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888877 77777777787888888888877765433332221
Q ss_pred ---------------------------------------------cCCCCCEEECCCCccceecchhhcCCCCcCEEEcC
Q psy8880 57 ---------------------------------------------ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91 (141)
Q Consensus 57 ---------------------------------------------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 91 (141)
.+++|+.+++++|.+..+....|.++++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 25688888998888888888889999999999998
Q ss_pred CCcCcccChhhcCCCCCCC-EEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 92 HNFLRALTQDLITPLKSLQ-ELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 92 ~n~l~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.| +..++..+|..+.+|+ .+.+.. .++.+.+..|..|++|+.+++++|
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 87 8888888899999999 999987 788888889999999999988653
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8.6e-17 Score=108.42 Aligned_cols=87 Identities=29% Similarity=0.326 Sum_probs=39.3
Q ss_pred hccCCCCCEEECCCCccc----eecchhhcCCCCcCEEEcCCCcCcccC----hhhc--CCCCCCCEEEcCCCCccc---
Q psy8880 55 FRALSTLSHLDLAHNRIV----AVSGASLAHLSNLTTLDLSHNFLRALT----QDLI--TPLKSLQELRLDDNDISM--- 121 (141)
Q Consensus 55 ~~~~~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~n~l~~~~----~~~~--~~~~~L~~l~l~~n~~~~--- 121 (141)
+..+++|+.|++++|.++ ...+..+..+++|++|++++|.++... +..+ +.+++|+.|++++|.+++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 334445555555555443 222333444455555555555544431 1122 224555555555555554
Q ss_pred -cCCCCc-CCCCceeEEEccCC
Q psy8880 122 -VTPDVI-GDNVTITTLTLSGE 141 (141)
Q Consensus 122 -~~~~~~-~~~~~L~~l~l~~n 141 (141)
..+..+ .++++|+.|++++|
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHHhcCCCceEEEccCC
Confidence 123333 33455555555544
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=5.6e-15 Score=103.99 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=53.4
Q ss_pred CCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCC----
Q psy8880 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL---- 109 (141)
Q Consensus 34 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L---- 109 (141)
+++|+.|++++|.++.++. .+++|+.|++++|.+..++ . +. ++|+.|++++|.++.++. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp-~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~ 206 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLP-E-LP--ESLEALDVSTNLLESLPA--VPV--RNHHSE 206 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC-C-CC--TTCCEEECCSSCCSSCCC--CC---------
T ss_pred CccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcc-h-hh--CCCCEEECcCCCCCchhh--HHH--hhhccc
Confidence 3445555555555444332 2345566666666555532 2 32 566666666666665554 332 45
Q ss_pred ---CEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 110 ---QELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 110 ---~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.|++++|.++.+ |..+..+++|+.|++++|
T Consensus 207 ~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 207 ETEIFFRCRENRITHI-PENILSLDPTCTIILEDN 240 (571)
T ss_dssp -CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS
T ss_pred ccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC
Confidence 7777777777765 555556777777777776
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.61 E-value=1.2e-14 Score=96.66 Aligned_cols=104 Identities=27% Similarity=0.391 Sum_probs=82.2
Q ss_pred EEEccCC-ccccccccccCCCCCccEEeccC-cccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCC
Q psy8880 15 VLSIAHN-QFSSVRRGALAGLDKLTSLSCHH-NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92 (141)
Q Consensus 15 ~l~l~~~-~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 92 (141)
.++++++ .+..++. +..+.+|+.|++++ |.++.+++..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 7777644 77788888888885 888888877888888888888888888888777788888888888888
Q ss_pred CcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 93 NFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 93 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
|.+..+++..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888777666555 8888888887753
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=5.5e-15 Score=104.13 Aligned_cols=101 Identities=31% Similarity=0.399 Sum_probs=92.8
Q ss_pred CccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcC
Q psy8880 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115 (141)
Q Consensus 36 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~ 115 (141)
.++.|++++|.++.++. +..+++|+.|++++|.+..+ |..++.+++|+.|++++|.+++++ .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 58899999999998764 88999999999999999955 678999999999999999999976 58999999999999
Q ss_pred CCCccccC-CCCcCCCCceeEEEccCC
Q psy8880 116 DNDISMVT-PDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 116 ~n~~~~~~-~~~~~~~~~L~~l~l~~n 141 (141)
+|.+++.. |..++.+++|+.|++++|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 99999987 889999999999999987
No 129
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.60 E-value=1.2e-14 Score=96.70 Aligned_cols=101 Identities=21% Similarity=0.313 Sum_probs=91.0
Q ss_pred cEEeccCc-ccceeCchhhccCCCCCEEECCC-CccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcC
Q psy8880 38 TSLSCHHN-QIDVLEDHSFRALSTLSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115 (141)
Q Consensus 38 ~~l~l~~~-~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~ 115 (141)
..++.+++ +++.++. +..+.+|+.|++++ |.+....+..|..+++|+.|++++|.++++++..+..+++|+.|+++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688887 8888776 88889999999996 99999988899999999999999999999999989999999999999
Q ss_pred CCCccccCCCCcCCCCceeEEEccCC
Q psy8880 116 DNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 116 ~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+|.++++.+..+..++ |+.|++.+|
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCC
Confidence 9999998777777776 999999886
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.6e-18 Score=107.23 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=107.7
Q ss_pred hcCCCCccEEEccCCcccccccc------ccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhc
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRG------ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 80 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 80 (141)
+.....++.++++.+.+.+..+. .+..+++++.|++++|.++.++ .+..+++|+.+++++|.+... +..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhh
Confidence 45556666677777766655444 7888999999999999999865 788899999999999999865 45666
Q ss_pred CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCC-CCcCCCCceeEEEccCC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP-DVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n 141 (141)
.+++|+.|++++|.+.+++ .+..+++|+.|++++|.+++..+ ..+..+++|+.+++++|
T Consensus 91 ~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6789999999999999875 37788999999999999987633 46889999999999987
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=6.2e-14 Score=98.76 Aligned_cols=95 Identities=24% Similarity=0.367 Sum_probs=48.6
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++|+.|++++|.+..++ ..+++|+.|++++|.++.++. +.. +|+.|++++|.+..++. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC----cCccccEEeC
Confidence 45666666666666443 234566666666666655443 322 55555555555554322 3444555555
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
++|.+++++. .+++|+.|++++|.+++
T Consensus 148 s~N~l~~lp~----~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 148 DNNQLTMLPE----LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSC
T ss_pred CCCccCcCCC----cCCCcCEEECCCCCCCC
Confidence 5555554332 23444444444444444
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.1e-14 Score=97.10 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=78.6
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccC-cccceeCchhhccCC-CCCEEECCCCccceecchhhcCC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH-NQIDVLEDHSFRALS-TLSHLDLAHNRIVAVSGASLAHL 82 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~ 82 (141)
..|..+++|+++++++|++...++..+....++..+++.. +.+..++...|..+. .++.+++++|.+..+.+..+ ..
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~ 176 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NG 176 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TT
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cc
Confidence 3455555555555555555555444444444455555532 345555554555443 46677777777776655444 34
Q ss_pred CCcCEEEcC-CCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeE
Q psy8880 83 SNLTTLDLS-HNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITT 135 (141)
Q Consensus 83 ~~L~~l~l~-~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 135 (141)
.+++.+.+. +|.++.++++.+..+++|+.|++++|.++.+.+..+.++++|+.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence 567777776 36677777777777788888888888877775555555555543
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=5e-16 Score=106.63 Aligned_cols=82 Identities=26% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCCEEECCCCcccee----cchhhcCCCCcCEEEcCCCcCcccChhhcC-----CCCCCCEEEcCCCCccc----cCCCC
Q psy8880 60 TLSHLDLAHNRIVAV----SGASLAHLSNLTTLDLSHNFLRALTQDLIT-----PLKSLQELRLDDNDISM----VTPDV 126 (141)
Q Consensus 60 ~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-----~~~~L~~l~l~~n~~~~----~~~~~ 126 (141)
+|+.+++++|.+... .+..+..+++|+.+++++|.+.+.....+. ..++|+.|++++|.+++ ..+..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 455555555544432 123344456667777777666654432222 15577777777777764 34555
Q ss_pred cCCCCceeEEEccCC
Q psy8880 127 IGDNVTITTLTLSGE 141 (141)
Q Consensus 127 ~~~~~~L~~l~l~~n 141 (141)
+..+++|+++++++|
T Consensus 394 l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 394 LLANHSLRELDLSNN 408 (461)
T ss_dssp HHHCCCCCEEECCSS
T ss_pred HHhCCCccEEECCCC
Confidence 666777777777765
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=3.1e-13 Score=93.01 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++|++|++++|.+..++ .+..+++|+++++++|+++.++. . .++++++++++|.+... | .++.+++|+.+++
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcC-c-cccCCCCCCEEEC
Confidence 35566666666655542 35555566666666555554332 1 13455555555554443 2 2444444444444
Q ss_pred CCCcCcc
Q psy8880 91 SHNFLRA 97 (141)
Q Consensus 91 ~~n~l~~ 97 (141)
++|.+.+
T Consensus 203 ~~N~l~~ 209 (454)
T 1jl5_A 203 DNNSLKK 209 (454)
T ss_dssp CSSCCSS
T ss_pred CCCcCCc
Confidence 4444443
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=4.5e-13 Score=92.23 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=49.3
Q ss_pred hcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcC
Q psy8880 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 86 (141)
Q Consensus 7 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~ 86 (141)
+.++++|+++++++|++..++. . ..+++++++++|.++.++ .+..+++|+.+++++|.+.... . ..++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP-D---LPLSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC-C---CCTTCC
T ss_pred cCCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCC-C---CcCccc
Confidence 4455555555555555544321 1 235555555555555433 3444555555555555544321 1 113455
Q ss_pred EEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 87 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
.+++++|.+..++. ++.+++|+.|++++|.+++
T Consensus 219 ~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 219 SIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp EEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred EEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc
Confidence 55555555554431 4455555555555555544
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=8.1e-15 Score=100.62 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=11.3
Q ss_pred hhhhcCCCCccEEEccCCccc
Q psy8880 4 WCTVRRLSSLKVLSIAHNQFS 24 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~~~~ 24 (141)
+..+..+++|++|++++|.+.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHccCCceeEEECCCCcCc
Confidence 444555555555555555544
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=3.5e-13 Score=95.86 Aligned_cols=95 Identities=25% Similarity=0.258 Sum_probs=49.8
Q ss_pred CCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 90 (141)
++|+.|++++|.+..++. .+++|++|++++|.++.++. .+++|+.|++++|.+..... .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEEC
Confidence 466666666666665433 35666666666666665543 34556666666665554422 2344445555
Q ss_pred CCCcCcccChhhcCCCCCCCEEEcCCCCccc
Q psy8880 91 SHNFLRALTQDLITPLKSLQELRLDDNDISM 121 (141)
Q Consensus 91 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 121 (141)
++|.+..++.. +++|++|++++|.+++
T Consensus 129 ~~N~l~~lp~~----l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 129 FGNQLTSLPVL----PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CSSCCSCCCCC----CTTCCEEECCSSCCSC
T ss_pred CCCCCCcCCCC----CCCCCEEECcCCcCCC
Confidence 55544443321 2444444444444443
No 138
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=4.1e-13 Score=95.50 Aligned_cols=94 Identities=26% Similarity=0.285 Sum_probs=68.3
Q ss_pred CCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEc
Q psy8880 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114 (141)
Q Consensus 35 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l 114 (141)
++|+.|++++|.++.++. .+++|+.|++++|.+..++ ..+++|+.|++++|.++.++. .+++|+.|++
T Consensus 201 ~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred chhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeC
Confidence 344444444444444332 1367888888888777653 356788888888888887765 5678999999
Q ss_pred CCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 115 DDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 115 ~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
++|.++.+ |..+..+++|+.|++++|
T Consensus 269 s~N~L~~l-p~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 269 YRNQLTRL-PESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CSSCCCSC-CGGGGGSCTTCEEECCSC
T ss_pred CCCCCCcC-CHHHhhccccCEEEecCC
Confidence 99999865 677889999999999887
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=2e-14 Score=96.66 Aligned_cols=131 Identities=19% Similarity=0.178 Sum_probs=91.4
Q ss_pred CCccEEEccCCccccccccccC-CCCCccEEeccCcccceeCchhhc-----cCCCCCEEECCCCccceec----chhhc
Q psy8880 11 SSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQIDVLEDHSFR-----ALSTLSHLDLAHNRIVAVS----GASLA 80 (141)
Q Consensus 11 ~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~----~~~~~ 80 (141)
++|+.|++++|.++......+. .+++++.|++++|.++......+. ..+.|+.|++++|.++... ...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 6888888888887654333332 346788888888888765444442 3577889999888886532 23446
Q ss_pred CCCCcCEEEcCCCcCcccC----hhhcCCCCCCCEEEcCCCCcccc----CCCCcCCCCceeEEEccCC
Q psy8880 81 HLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDDNDISMV----TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n 141 (141)
..++|++|++++|.+++.. ...+...++|+.|++++|.+++. ....+..+++|+.|++++|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 6788899999998887644 33456677899999998888753 2344556678888888876
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=1.1e-11 Score=84.14 Aligned_cols=61 Identities=8% Similarity=0.155 Sum_probs=34.2
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECC
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~ 67 (141)
..|.+|.+|+.+++.++++..+....|. +.+++.+.++. .++.+...+|..+++|+.+.+.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence 3577888888888887766555444444 34455555442 2444444444444444444443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=9.9e-12 Score=84.34 Aligned_cols=130 Identities=16% Similarity=0.284 Sum_probs=72.9
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccc-----eecchhhc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-----AVSGASLA 80 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~~~ 80 (141)
.|.++++|+.+.+..+ +..+...+|.. .+|+.+.++ +.++.+....|..+++|+.+.+.++... .+....|.
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 3555556666655542 33333334444 344444442 3355555556666666666666655443 34455566
Q ss_pred CCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
.+++|+.+.+. +.+..+....+..+.+|+.+.+..+ ++.+...+|.+| +|+.+++.+|
T Consensus 298 ~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 66666666666 3466666666666666666666443 555556666666 6666666543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=5.4e-14 Score=94.55 Aligned_cols=132 Identities=21% Similarity=0.198 Sum_probs=99.9
Q ss_pred CCCccEEEccCCccccccccccCC-----CCCccEEeccCcccceeCchhhc-cCCCCCEEECCCCccceecchhh----
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALAG-----LDKLTSLSCHHNQIDVLEDHSFR-ALSTLSHLDLAHNRIVAVSGASL---- 79 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~---- 79 (141)
++.|+.+++++|.++......+.. ..+|+.|++++|.++......+. .+++++.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357899999999998654433333 36999999999998765443333 46789999999999976544333
Q ss_pred -cCCCCcCEEEcCCCcCcccChh----hcCCCCCCCEEEcCCCCccccC----CCCcCCCCceeEEEccCC
Q psy8880 80 -AHLSNLTTLDLSHNFLRALTQD----LITPLKSLQELRLDDNDISMVT----PDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 80 -~~~~~L~~l~l~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~l~l~~n 141 (141)
...+.|+.|++++|.++..... .+...++|++|++++|.+++.. ...+..+++|+.|++++|
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 2467899999999999874432 3467889999999999987632 455677789999999986
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=1.5e-12 Score=91.83 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCCccEEEccCCccccccccccCC-CCCccEEecc----CcccceeCc-----hhhccCCCCCEEECCCCc--cceecc
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAG-LDKLTSLSCH----HNQIDVLED-----HSFRALSTLSHLDLAHNR--IVAVSG 76 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~-~~~l~~l~l~----~~~~~~~~~-----~~~~~~~~l~~l~l~~~~--~~~~~~ 76 (141)
.+++|+.|++..+.++......+.. +++|+.|++. .+.++..+. ..+..+++|+.|+++.+. ++....
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 3455555555444444433333332 4555555553 333333211 113334555555553221 222111
Q ss_pred hhh-cCCCCcCEEEcCCCcCcccC-hhhcCCCCCCCEEEcCCCCcccc-CCCCcCCCCceeEEEccCC
Q psy8880 77 ASL-AHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMV-TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 77 ~~~-~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~l~l~~n 141 (141)
..+ ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++. .+.....+++|+.|++++|
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 111 22455556666555554422 22234555566666666555432 1222334555555555544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.18 E-value=2.8e-11 Score=85.44 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=44.5
Q ss_pred cCCCCccEEEccCCcccccc----ccccCCCCCccEEeccCcccceeCc----hhhccCCCCCEEECCCCccceecchhh
Q psy8880 8 RRLSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVSGASL 79 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~~~~ 79 (141)
..+++|++|++++|.+.+.. +..+..+++|+.|+++++.++.... ..+..+++|+.|+++++.+... +..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHHH
Confidence 35666666666666654331 1223345666666666666552222 2234456667777666665543 3444
Q ss_pred cCCCCcCEEEcC
Q psy8880 80 AHLSNLTTLDLS 91 (141)
Q Consensus 80 ~~~~~L~~l~l~ 91 (141)
..+++|+.++++
T Consensus 240 ~~~~~L~~L~l~ 251 (592)
T 3ogk_B 240 KAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEEEC
T ss_pred hhhhHHHhhccc
Confidence 455555555554
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=1.2e-11 Score=87.29 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=79.0
Q ss_pred CCCccEEEccCCccccccccccC-CCCCccEEecc--C----cccceeCc-----hhhccCCCCCEEECCCCccceecch
Q psy8880 10 LSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCH--H----NQIDVLED-----HSFRALSTLSHLDLAHNRIVAVSGA 77 (141)
Q Consensus 10 l~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~--~----~~~~~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~~ 77 (141)
+++|+.|.+..+.++......+. .+++|+.|++. + +.++..+. ..+..+++|+.|++++ .+......
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55566665555555543333333 36677777777 3 34442221 1244567777787765 44443333
Q ss_pred hhcC-CCCcCEEEcCCCcCcccChhhc-CCCCCCCEEEcCCCCccccCC-CCcCCCCceeEEEccCC
Q psy8880 78 SLAH-LSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDNDISMVTP-DVIGDNVTITTLTLSGE 141 (141)
Q Consensus 78 ~~~~-~~~L~~l~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~n 141 (141)
.+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++... .....+++|+.|++++|
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 3333 6778888888888765544333 567888888888888865432 23455788888888765
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.08 E-value=2.5e-11 Score=85.65 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=64.4
Q ss_pred cCCCCccEEEccCCccccccccccC-CCCCccEEeccCc-ccceeC-chhhccCCCCCEEECCCCccceecchhh----c
Q psy8880 8 RRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHN-QIDVLE-DHSFRALSTLSHLDLAHNRIVAVSGASL----A 80 (141)
Q Consensus 8 ~~l~~L~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~-~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~----~ 80 (141)
..+++|+.|++++|.+.......+. .+++|+.|++.+| .++... +..+..+++|++|++++|.+....+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3455666666666665554433343 4566666666666 333221 1122346666777776666544332222 2
Q ss_pred CCCCcCEEEcCCCcCcccCh----hhcCCCCCCCEEEcCCC-CccccCCCCcCCCCceeEEE
Q psy8880 81 HLSNLTTLDLSHNFLRALTQ----DLITPLKSLQELRLDDN-DISMVTPDVIGDNVTITTLT 137 (141)
Q Consensus 81 ~~~~L~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~L~~l~ 137 (141)
.+++|+.|+++++. ..+.. .....+++|+.|++++| .+.+ .+..+..+++|+.++
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELG 241 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEE
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcc
Confidence 45566666666664 11111 11233566667766665 2222 233344445555554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.04 E-value=1.4e-10 Score=70.87 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=77.0
Q ss_pred hhhhcCCCCccEEEccCC-cccccc----ccccCCCCCccEEeccCcccceeCch----hhccCCCCCEEECCCCcccee
Q psy8880 4 WCTVRRLSSLKVLSIAHN-QFSSVR----RGALAGLDKLTSLSCHHNQIDVLEDH----SFRALSTLSHLDLAHNRIVAV 74 (141)
Q Consensus 4 ~~~~~~l~~L~~l~l~~~-~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~ 74 (141)
...+...+.|++|++++| .+.... ...+...+++++|++++|.+...... .+...+.|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667788888888888 776432 23455567788888888877654332 233456788888888877653
Q ss_pred c----chhhcCCCCcCEEEc--CCCcCcccCh----hhcCCCCCCCEEEcCCCCcc
Q psy8880 75 S----GASLAHLSNLTTLDL--SHNFLRALTQ----DLITPLKSLQELRLDDNDIS 120 (141)
Q Consensus 75 ~----~~~~~~~~~L~~l~l--~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~ 120 (141)
. ...+...+.|++|++ ++|.+..... ..+...++|+.|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 234555677888888 7777776432 23445577888888877664
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=2.4e-10 Score=76.61 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=74.6
Q ss_pred hhhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhc--cCCCCCEEECCC--Cccc-ee----c
Q psy8880 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR--ALSTLSHLDLAH--NRIV-AV----S 75 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~~~~l~~l~l~~--~~~~-~~----~ 75 (141)
..+..+|+|+.|.++++.-.... .+ .+++|+.|++..+.+.......+. .+|+|+.|+++. +... .. .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34455667777777665211111 12 256677777766665443333333 567888887642 1110 00 0
Q ss_pred chhh--cCCCCcCEEEcCCCcCcccChhhc---CCCCCCCEEEcCCCCcccc----CCCCcCCCCceeEEEccCC
Q psy8880 76 GASL--AHLSNLTTLDLSHNFLRALTQDLI---TPLKSLQELRLDDNDISMV----TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 76 ~~~~--~~~~~L~~l~l~~n~l~~~~~~~~---~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~n 141 (141)
...+ ..+++|++|++.+|.+.......+ ..+++|+.|+++.|.+.+. ....+..+++|+.|++++|
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0111 246778888887777664332222 3467888888888877663 2334455677888887765
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=1.6e-08 Score=67.92 Aligned_cols=108 Identities=15% Similarity=0.254 Sum_probs=52.2
Q ss_pred ccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCC
Q psy8880 28 RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 107 (141)
Q Consensus 28 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~ 107 (141)
...+..+..|+.+.++.+ ++.+....|..+..++.+.+.. .+.......|..+++|+.+.+..+.+..+...++..+.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCC
Confidence 334445555555555443 4444444555555555555433 23333334445555555555555555555555555555
Q ss_pred CCCEEEcCCCCccccCCCCcCCCCceeEEEc
Q psy8880 108 SLQELRLDDNDISMVTPDVIGDNVTITTLTL 138 (141)
Q Consensus 108 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l 138 (141)
+|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5555555432 44444445555555544443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.91 E-value=2.8e-08 Score=66.79 Aligned_cols=124 Identities=13% Similarity=0.203 Sum_probs=101.4
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+.++..|+.+.+..+ +..+...+|..+..++.+.++. .+..+....|..+.+|+.+.+..+.+..+....|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4566777888877664 6666667888899999999975 4778888899999999999999888888888899999999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCce
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTI 133 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L 133 (141)
+.+.+..+ +..+...++..+.+|+.+.+..+ ++.+...+|.+|+-+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999754 78888888999999999998654 777777788777543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.91 E-value=2.5e-08 Score=67.42 Aligned_cols=127 Identities=13% Similarity=0.269 Sum_probs=72.4
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.|.++..|+.+.+...- ......+|..+..|+.+.++ +.++.+....|.++.+|+.+.+..+ +..+....|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 45566666666665432 23334556666677776665 3466666666777777777777543 555555666677777
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEcc
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~ 139 (141)
+.+.+..+ +..+...+|.++.+|+.+.+.++.... ..+..+..|+.+.+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 77776543 566666667777777777776653221 234445555555543
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=5e-10 Score=68.36 Aligned_cols=114 Identities=14% Similarity=0.182 Sum_probs=87.0
Q ss_pred ccccCCCCCccEEeccCc-ccceeCc----hhhccCCCCCEEECCCCccceec----chhhcCCCCcCEEEcCCCcCccc
Q psy8880 28 RGALAGLDKLTSLSCHHN-QIDVLED----HSFRALSTLSHLDLAHNRIVAVS----GASLAHLSNLTTLDLSHNFLRAL 98 (141)
Q Consensus 28 ~~~~~~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~l~~~ 98 (141)
...+...+.+++|++++| .+..... ..+...+++++|++++|.+.... ...+...+.|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667889999999999 8875433 24455689999999999987543 23455568899999999999875
Q ss_pred C----hhhcCCCCCCCEEEc--CCCCcccc----CCCCcCCCCceeEEEccCC
Q psy8880 99 T----QDLITPLKSLQELRL--DDNDISMV----TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 99 ~----~~~~~~~~~L~~l~l--~~n~~~~~----~~~~~~~~~~L~~l~l~~n 141 (141)
. ...+...++|+.|++ ++|.+... ....+...++|++|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4 344667789999999 88998764 2355666788999999876
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=1.2e-07 Score=64.09 Aligned_cols=100 Identities=14% Similarity=0.261 Sum_probs=44.6
Q ss_pred cCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCC
Q psy8880 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 110 (141)
Q Consensus 31 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 110 (141)
|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ +..+...+|.++++|+.+.+..+ +..+...++..+.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 333444444444332 44444444555555555555422 33443444545555555555433 4444444455555555
Q ss_pred EEEcCCCCccccCCCCcCCCCceeE
Q psy8880 111 ELRLDDNDISMVTPDVIGDNVTITT 135 (141)
Q Consensus 111 ~l~l~~n~~~~~~~~~~~~~~~L~~ 135 (141)
.+.+..+ +... ...|.+|++|+.
T Consensus 370 ~i~lp~~-~~~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 370 KVELPKR-LEQY-RYDFEDTTKFKW 392 (394)
T ss_dssp EEEEEGG-GGGG-GGGBCTTCEEEE
T ss_pred EEEECCC-CEEh-hheecCCCCCcE
Confidence 5554332 2222 233444544443
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.82 E-value=9.4e-08 Score=64.65 Aligned_cols=112 Identities=13% Similarity=0.306 Sum_probs=92.6
Q ss_pred ccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCcCEEEcCCCcCcccChhhcCC
Q psy8880 26 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 105 (141)
Q Consensus 26 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 105 (141)
....+|..+..|+.+.++.+ +..+....|..+..|+.+.+. +.+..+....|.++.+|+.+.+..+ ++.+...++..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34456788889999998764 456777789999999999986 4567777788999999999999864 78888888999
Q ss_pred CCCCCEEEcCCCCccccCCCCcCCCCceeEEEccCC
Q psy8880 106 LKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 106 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~n 141 (141)
+.+|+.+.+..+ ++.+...+|.+|++|+.+++.++
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 999999999654 78887889999999999998764
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.80 E-value=8.2e-10 Score=70.96 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=59.1
Q ss_pred ccCCCCCEEECCCCccceec--chhhcCCCCcCEEEcCCCcCcccCh-hhcCCCCCCCEEEcCCCCccccCC-------C
Q psy8880 56 RALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTP-------D 125 (141)
Q Consensus 56 ~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~-------~ 125 (141)
..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.+... ..+..+ +|+.|++.+|++++..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 45788999999999888743 3556678899999999999888732 223444 89999999998876433 2
Q ss_pred CcCCCCceeEEE
Q psy8880 126 VIGDNVTITTLT 137 (141)
Q Consensus 126 ~~~~~~~L~~l~ 137 (141)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777776
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=1.7e-07 Score=63.45 Aligned_cols=128 Identities=12% Similarity=0.212 Sum_probs=104.9
Q ss_pred hhcCCCCccEEEccCCccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceecchhhcCCCCc
Q psy8880 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L 85 (141)
.+.++..++.+.+..+. .......|..+..++.+...... ++...|..+.+|+.+.+..+ +..+...+|.++++|
T Consensus 248 ~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCc-ceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 56788899999887764 34455678888999988877654 45567888999999999764 667777889999999
Q ss_pred CEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCccccCCCCcCCCCceeEEEccC
Q psy8880 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140 (141)
Q Consensus 86 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 140 (141)
+.+++..+ +..+...++..+.+|+.+.+..+ ++.+...+|..|++|+.+++..
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 99999754 88888888999999999999876 8888889999999999998754
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.71 E-value=8.9e-09 Score=62.09 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCccEEeccCcccceeCchhhccCCCCCEEECCCCc-cceecchhhcCC----CCcCEEEcCCCc-CcccChhhcCCCCC
Q psy8880 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHL----SNLTTLDLSHNF-LRALTQDLITPLKS 108 (141)
Q Consensus 35 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~n~-l~~~~~~~~~~~~~ 108 (141)
..|+.++++++.++...-..+..+++|+.|+++++. +++..-..+..+ ++|++|+++++. +++..-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368888888888776655566778888888888875 555444445553 368899998874 77766666778889
Q ss_pred CCEEEcCCCC-ccc
Q psy8880 109 LQELRLDDND-ISM 121 (141)
Q Consensus 109 L~~l~l~~n~-~~~ 121 (141)
|+.|+++++. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999998874 444
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=7.9e-09 Score=69.28 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=85.8
Q ss_pred hhhcCCCCccEEEccCCccc-----c----ccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCccceec
Q psy8880 5 CTVRRLSSLKVLSIAHNQFS-----S----VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 75 (141)
Q Consensus 5 ~~~~~l~~L~~l~l~~~~~~-----~----~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 75 (141)
+++..+++|+.|.+...... . .....+..+++|+.|.++++.-..+++ + ..++|+.|++..+.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHH
Confidence 44566789999988754321 1 112345678999999998873222222 3 3789999999988876443
Q ss_pred chhhc--CCCCcCEEEcCC--CcCc------ccChhhc--CCCCCCCEEEcCCCCccccCCCCc---CCCCceeEEEccC
Q psy8880 76 GASLA--HLSNLTTLDLSH--NFLR------ALTQDLI--TPLKSLQELRLDDNDISMVTPDVI---GDNVTITTLTLSG 140 (141)
Q Consensus 76 ~~~~~--~~~~L~~l~l~~--n~l~------~~~~~~~--~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~L~~l~l~~ 140 (141)
...+. .+++|++|++.. +... .+.+ .+ ..+++|+.|++.+|.+.+..+..+ ..++.|+.|+++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 33343 689999998853 2211 1111 12 357899999999998864321112 3578999999987
Q ss_pred C
Q psy8880 141 E 141 (141)
Q Consensus 141 n 141 (141)
|
T Consensus 289 n 289 (362)
T 2ra8_A 289 G 289 (362)
T ss_dssp S
T ss_pred C
Confidence 6
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=2.8e-08 Score=59.92 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCCccEEEccCCccccccccccCCCCCccEEeccCcc-cceeCchhhccC----CCCCEEECCCCc-cceecchhhcCC
Q psy8880 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRAL----STLSHLDLAHNR-IVAVSGASLAHL 82 (141)
Q Consensus 9 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~~~~~~~~ 82 (141)
.-..|+.+++++|.++...-..+..+++|++|++++|. ++...-..+..+ ++|+.|+++++. +++..-..+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34467788888887766555566777888888888773 655444444443 367888887764 655444556667
Q ss_pred CCcCEEEcCCCc
Q psy8880 83 SNLTTLDLSHNF 94 (141)
Q Consensus 83 ~~L~~l~l~~n~ 94 (141)
++|++|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 788888887763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=6.4e-08 Score=62.22 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCCCCccEEeccCcccceeCc--hhhccCCCCCEEECCCCccceec-chhhcCCCCcCEEEcCCCcCcccCh-------h
Q psy8880 32 AGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQ-------D 101 (141)
Q Consensus 32 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~-------~ 101 (141)
..+++|+.|++++|+++.+.. ..+..+++|+.|++++|.+.... ...+..+ .|+.|++.+|.+.+..+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 347899999999999988653 45667899999999999998762 1333334 89999999999876322 3
Q ss_pred hcCCCCCCCEEEc
Q psy8880 102 LITPLKSLQELRL 114 (141)
Q Consensus 102 ~~~~~~~L~~l~l 114 (141)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4667899998863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.88 E-value=2.3e-05 Score=48.12 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=58.4
Q ss_pred hhcCCCCccEEEccCC-ccccc----cccccCCCCCccEEeccCcccceeCchhh----ccCCCCCEEECCCCccceecc
Q psy8880 6 TVRRLSSLKVLSIAHN-QFSSV----RRGALAGLDKLTSLSCHHNQIDVLEDHSF----RALSTLSHLDLAHNRIVAVSG 76 (141)
Q Consensus 6 ~~~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~~~----~~~~~l~~l~l~~~~~~~~~~ 76 (141)
.+..-+.|+.|++.++ .+... ..+.+..-..|+.|++++|++.......+ ..-..|+.|++++|.+.....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445566777777764 55432 12344445667777777776664433322 233566667776666654321
Q ss_pred ----hhhcCCCCcCEEEcCCC---cCcccC----hhhcCCCCCCCEEEcCCCC
Q psy8880 77 ----ASLAHLSNLTTLDLSHN---FLRALT----QDLITPLKSLQELRLDDND 118 (141)
Q Consensus 77 ----~~~~~~~~L~~l~l~~n---~l~~~~----~~~~~~~~~L~~l~l~~n~ 118 (141)
+.+..-+.|+.|+++++ .+.... ...+..-++|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23334455666666543 222211 1223344566666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.74 E-value=8.8e-05 Score=42.51 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=45.3
Q ss_pred CEEECCCCccc--eecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCCCcc
Q psy8880 62 SHLDLAHNRIV--AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120 (141)
Q Consensus 62 ~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 120 (141)
..++.+++.++ .+ |..+ ..++++|+|++|.++.+++..+..+++|+.|++++|++.
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTS-CSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccC-CCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 44 3222 346899999999999999998999999999999999875
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.74 E-value=0.0001 Score=42.21 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=35.4
Q ss_pred EEEccCCccc--cccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCCcc
Q psy8880 15 VLSIAHNQFS--SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71 (141)
Q Consensus 15 ~l~l~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 71 (141)
.++.+++.++ .++.. -..+++.|++++|+|+.++...|..+++|+.+++.+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666666 44321 123577777777777777777777777777777777755
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.73 E-value=2.6e-05 Score=47.86 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=77.3
Q ss_pred cCCCCCccEEeccCc-ccceeCc----hhhccCCCCCEEECCCCccceecc----hhhcCCCCcCEEEcCCCcCcccCh-
Q psy8880 31 LAGLDKLTSLSCHHN-QIDVLED----HSFRALSTLSHLDLAHNRIVAVSG----ASLAHLSNLTTLDLSHNFLRALTQ- 100 (141)
Q Consensus 31 ~~~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~n~l~~~~~- 100 (141)
+..-+.|+.|+++++ .|..... ..+..-..|+.|++++|.+.+... +.+..-+.|+.|++++|.+.....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 444578999999985 7764332 244455789999999999976543 334456889999999999987554
Q ss_pred ---hhcCCCCCCCEEEcCCC---Ccccc----CCCCcCCCCceeEEEccCC
Q psy8880 101 ---DLITPLKSLQELRLDDN---DISMV----TPDVIGDNVTITTLTLSGE 141 (141)
Q Consensus 101 ---~~~~~~~~L~~l~l~~n---~~~~~----~~~~~~~~~~L~~l~l~~n 141 (141)
..+..-..|+.|+++++ .+... ....+..-++|..++++.|
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 34566678999999865 33321 2345566677888887653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.48 E-value=0.076 Score=28.75 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=37.6
Q ss_pred CccceecchhhcCCCCcCEEEcCCCcCcccChhhcCCCCCCCEEEcCCC
Q psy8880 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117 (141)
Q Consensus 69 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 117 (141)
..++.+....|.+++.|+.+.+..+ ++.+....|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455565678889999999988764 67777788899999999988654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.30 E-value=0.24 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred CccccccccccCCCCCccEEeccCcccceeCchhhccCCCCCEEECCCC
Q psy8880 21 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69 (141)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 69 (141)
..+..+...+|.+|..|+.+.++. .++.+...+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 345555556677777777777765 355566666666777766666543
Done!