RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8880
(141 letters)
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 109 bits (275), Expect = 2e-30
Identities = 35/133 (26%), Positives = 52/133 (39%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L L L + + G GL L L N + L D +FR L L+HL L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
NRI +V + L +L L L N + + L L L L N++S + + +
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Query: 128 GDNVTITTLTLSG 140
+ L L+
Sbjct: 222 APLRALQYLRLND 234
Score = 101 bits (255), Expect = 2e-27
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 10 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L+ L ++ N Q SV GL +L +L + L FR L+ L +L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N + A+ + L NLT L L N + ++ + L SL L L N ++ V P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 129 DNVTITTLTLSG 140
D + TL L
Sbjct: 199 DLGRLMTLYLFA 210
Score = 101 bits (253), Expect = 3e-27
Identities = 39/110 (35%), Positives = 57/110 (51%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
R L++L+ L + N ++ L LT L H N+I + + +FR L +L L L
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
NR+ V + L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 97.4 bits (243), Expect = 8e-26
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 2 SIWCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
+ C + L + + + + N+ S V + LT L H N + ++
Sbjct: 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 54 SFRALSTLSHLDLAHN-RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 112
+F L+ L LDL+ N ++ +V A+ L L TL L L+ L L L +LQ L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 113 RLDDNDISMVTPDVIGDNVTITTLTLSG 140
L DN + + D D +T L L G
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHG 162
Score = 34.2 bits (79), Expect = 0.008
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
R L L L + N S++ ALA L L L + N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 108 bits (271), Expect = 8e-29
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+ L + N S+V GA L L +L N++ ++ F LS L+ LD++
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
N+IV + L NL +L++ N L ++ + L SL++L L+ +++ + + +
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 128 GDNVTITTLTLSG 140
+ L L
Sbjct: 173 SHLHGLIVLRLRH 185
Score = 107 bits (269), Expect = 1e-28
Identities = 34/131 (25%), Positives = 61/131 (46%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L+ L + N+ + G GL LT L N+I +L D+ F+ L L L++ N
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+V +S + + L++L L L L ++ + ++ L L LRL +I+ +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198
Query: 130 NVTITTLTLSG 140
+ L +S
Sbjct: 199 LYRLKVLEISH 209
Score = 102 bits (256), Expect = 9e-27
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 2 SIWCTVRRL--------SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
++ C +R + ++L + N+ ++ + A L L + N + +E
Sbjct: 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+F L L L L NR+ + LSNLT LD+S N + L + L +L+ L
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLSG 140
+ DND+ ++ ++ LTL
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEK 161
Score = 102 bits (255), Expect = 1e-26
Identities = 29/133 (21%), Positives = 53/133 (39%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
LS+L L I+ N+ + L L SL N + + +F L++L L L
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+ ++ +L+HL L L L H + A+ L L+ L +
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220
Query: 128 GDNVTITTLTLSG 140
+ +T+L+++
Sbjct: 221 LYGLNLTSLSITH 233
Score = 101 bits (253), Expect = 3e-26
Identities = 30/133 (22%), Positives = 50/133 (37%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +LK L + N + A +GL+ L L+ + + + L L L L
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
H I A+ S L L L++SH +L L + +++ V +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244
Query: 128 GDNVTITTLTLSG 140
V + L LS
Sbjct: 245 RHLVYLRFLNLSY 257
Score = 100 bits (250), Expect = 7e-26
Identities = 35/133 (26%), Positives = 65/133 (48%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+SL+ L++ +S+ AL+ L L L H I+ + D+SF+ L L L+++
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
H + + + NLT+L ++H L A+ + L L+ L L N IS + ++
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 128 GDNVTITTLTLSG 140
+ + + + L G
Sbjct: 269 HELLRLQEIQLVG 281
Score = 97.9 bits (244), Expect = 4e-25
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+L LSI H ++V A+ L L L+ +N I +E L L + L
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
++ V + L+ L L++S N L L + + + +L+ L LD N ++
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 97.1 bits (242), Expect = 1e-24
Identities = 35/133 (26%), Positives = 54/133 (40%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+RL LKVL I+H + LTSLS H + + + R L L L+L+
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+N I + G+ L L L + L L + L L+ L + N ++ + V
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316
Query: 128 GDNVTITTLTLSG 140
+ TL L
Sbjct: 317 HSVGNLETLILDS 329
Score = 96.7 bits (241), Expect = 1e-24
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L VL + H +++R + L +L L H +D + + L+ L+ L + H
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITH 233
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ AV ++ HL L L+LS+N + + ++ L LQE++L +++V P
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 129 DNVTITTLTLSG 140
+ L +SG
Sbjct: 294 GLNYLRVLNVSG 305
Score = 78.6 bits (194), Expect = 3e-18
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 63
+ VR L L+ L++++N S++ L L +L + Q+ V+E ++FR L+ L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
L+++ N++ + + + NL TL L N L
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 102 bits (255), Expect = 1e-26
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 8 RRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R+ SL+ L + + S + GA GL L L+ + + + L L LDL
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDL 214
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ N + A+ S L +L L + + ++ + ++ L+SL E+ L N+++++ D+
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274
Query: 127 IGDNVTITTLTLSG 140
+ + L
Sbjct: 275 FTPLHHLERIHLHH 288
Score = 97.5 bits (243), Expect = 5e-25
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Query: 2 SIWCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
+ C + L ++L++ NQ ++ + L L L N I +E
Sbjct: 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+F L+ L+ L+L NR+ + + +LS L L L +N + ++ + SL+ L
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 114 LDD-NDISMVTPDVIGDNVTITTLTLSG 140
L + +S ++ + L L+
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAM 194
Score = 97.5 bits (243), Expect = 6e-25
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS+L+ L++A + L L KL L N + + SF+ L L L + +
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+I + + +L +L ++L+HN L L DL TPL L+ + L N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 80.9 bits (200), Expect = 4e-19
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L L L ++ N S++R G+ GL L L +QI V+E ++F L +L ++LA
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHN 93
HN + + L +L + L HN
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 100 bits (251), Expect = 1e-26
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 2/135 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDL 66
L +L L I+H G GL L L N + F L L+ LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ ++ +S + LS+L L++SHN +L L SLQ L N I
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 127 IGDNVT-ITTLTLSG 140
+ + + L L+
Sbjct: 243 LQHFPSSLAFLNLTQ 257
Score = 93.2 bits (232), Expect = 5e-24
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 8 RRLSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
LSSL+VL +A N F + L LT L Q++ L +F +LS+L L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL-KSLQELRLDDNDIS 120
+HN ++ L++L LD S N + + + SL L L ND +
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 86.2 bits (214), Expect = 2e-21
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLAH 68
+SLK L ++ N ++ GL++L L H+ + + + S F +L L +LD++H
Sbjct: 77 TTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN-FLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
LS+L L ++ N F D+ T L++L L L + ++P
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 128 GDNVTITTLTLSG 140
++ L +S
Sbjct: 196 NSLSSLQVLNMSH 208
Score = 85.4 bits (212), Expect = 5e-21
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV--LEDHSFRALSTLSHLDLAH 68
SS L + N+ S+ G L +LT LS N + S ++L +LDL+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDVI 127
N ++ +S L L LD H+ L+ +++ + L++L L + + +
Sbjct: 88 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 128 GDNVTITTLTLSG 140
++ L ++G
Sbjct: 147 NGLSSLEVLKMAG 159
Score = 55.8 bits (135), Expect = 3e-10
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 38 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 97
T + C+ + + S+ + L+L N++ ++ L+ LT L LS N L
Sbjct: 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 98 --LTQDLITPLKSLQELRLDDNDISMVTPD 125
SL+ L L N + ++ +
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 102 bits (257), Expect = 1e-26
Identities = 36/131 (27%), Positives = 56/131 (42%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+++ VL++ HNQ + +LTSL N I LE + L L L+L HN
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ +S + A +NLT L L N ++ + + K+L L L N +S
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 130 NVTITTLTLSG 140
+ L LS
Sbjct: 144 LENLQELLLSN 154
Score = 100 bits (250), Expect = 1e-25
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
R S L L + N S + L L L+ HN++ L D +F + L+ L L
Sbjct: 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
N I + NL TLDLSHN L + L++LQEL L +N I + + +
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165
Query: 128 GD--NVTITTLTLSG 140
N ++ L LS
Sbjct: 166 DIFANSSLKKLELSS 180
Score = 90.4 bits (225), Expect = 3e-22
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH--------SFRALSTL 61
L +L +L +++N +++ L GL+KL L HN + L H + LS L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
L+L N + L L +DL N L L + SL+ L L N I+
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 122 VTPDVIGDNVT-ITTLTLSG 140
V V G +T L +
Sbjct: 599 VEKKVFGPAFRNLTELDMRF 618
Score = 89.3 bits (222), Expect = 7e-22
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLA 67
S L +L++ N+ S + A + L L L N+I L +R L + + L+
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQELRLDDNDISMVTPD 125
+N+ + ++ S A + +L L L L+ + PL++L L L +N+I+ + D
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 126 VIGDNVTITTLTLSG 140
++ + L L
Sbjct: 499 MLEGLEKLEILDLQH 513
Score = 86.6 bits (215), Expect = 6e-21
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLD 65
+ +L L ++HN SS + G L+ L L +N+I L+ S+L L+
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT---PLKSLQELRLDDNDISMV 122
L+ N+I S + L L L++ L + + S++ L L ++ +S
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 123 TPDVIG--DNVTITTLTLSG 140
+ +T L LS
Sbjct: 238 SNTTFLGLKWTNLTMLDLSY 257
Score = 84.3 bits (209), Expect = 4e-20
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 8 RRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
L L+VL + N+ + GL+ + + +N+ L +SF + +L L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 67 AHNRI--VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
+ V S + L NLT LDLS+N + + D++ L+ L+ L L N+++ +
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521
Query: 125 D 125
Sbjct: 522 H 522
Score = 83.5 bits (207), Expect = 7e-20
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRAL 58
C +S++ LS++++Q S+ GL LT L +N ++V+ + SF L
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF---------LRALTQDLITPLKSL 109
L + L +N I + SL L N+ L+L +F L + LK L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L ++DNDI + ++ + + L+LS
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Score = 81.2 bits (201), Expect = 5e-19
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 8 RRLSSLKVLSIAHNQFS--SVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRALSTLSH 63
L +LK LS++++ S ++ L L L+ N+I +E +F L L
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 64 LDLAHNRIV-AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
LDL N I ++G L N+ + LS+N LT++ + SLQ L L + V
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 123 T--PDVIGDNVTITTLTLSG 140
P +T L LS
Sbjct: 470 DSSPSPFQPLRNLTILDLSN 489
Score = 80.8 bits (200), Expect = 7e-19
Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN---------QIDVLEDHSFRALST 60
L L+ + +N + +L GL + L+ + + ++D SF+ L
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT----PLKSLQELRLDD 116
L HL++ N I + L NL L LS++F T T L L L
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 117 NDISMVTPDVIGDNVTITTLTLSG 140
N IS + D + L L
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGL 414
Score = 73.1 bits (180), Expect = 3e-16
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
C H ++ + D + ++ L+L HN++ + A+ S LT+LD+ N +
Sbjct: 6 HEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L +L L L+ L L N++S ++ +T L L
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Score = 72.7 bits (179), Expect = 4e-16
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 14/147 (9%)
Query: 8 RRLSSLKVLSIAHNQFSSV---RRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLS 62
+ L L + + Q + + +LS ++Q+ + +F L + L+
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN----- 117
LDL++N + V S A L L L +N ++ L + L +++ L L +
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 118 ----DISMVTPDVIGDNVTITTLTLSG 140
+ + + L +
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMED 338
Score = 70.4 bits (173), Expect = 2e-15
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 61
++ LS L +L++ N F + L +L + N ++ L F +L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 62 SHLDLAHNRIVAVSGASLAH-LSNLTTLDLSHN 93
L+L N I +V NLT LD+ N
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 52.3 bits (126), Expect = 5e-09
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
+ D +H ++ V +N+T L+L+HN LR L T L L + N I
Sbjct: 5 SHEVADCSHLKLTQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 120 SMVTPDVIGDNVTITTLTLSG 140
S + P++ + L L
Sbjct: 62 SKLEPELCQKLPMLKVLNLQH 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 100 bits (250), Expect = 4e-26
Identities = 25/132 (18%), Positives = 57/132 (43%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++ K+++ ++ + L ++ L+ + QI+ ++ ++F T+ L +
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N I + ++ LT L L N L +L + + L L + +N++ + D
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 129 DNVTITTLTLSG 140
++ L LS
Sbjct: 163 ATTSLQNLQLSS 174
Score = 95.5 bits (238), Expect = 2e-24
Identities = 29/117 (24%), Positives = 50/117 (42%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+++L++ Q + A A + L N I L H F+ + L+ L L N
Sbjct: 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ ++ + LTTL +S+N L + D SLQ L+L N ++ V +
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184
Score = 86.6 bits (215), Expect = 4e-21
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ + L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L +L L+
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
NR+ V L+ + +L ++S+N L L +++EL N I++V V
Sbjct: 174 SNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV- 224
Query: 128 GDNVTITTLTLSG 140
NV +T L L
Sbjct: 225 --NVELTILKLQH 235
Score = 85.5 bits (212), Expect = 9e-21
Identities = 21/129 (16%), Positives = 48/129 (37%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
+ I L+ ++ ++ + L + + L+L +I
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81
Query: 72 VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNV 131
+ + A+ + L + N +R L + + L L L+ ND+S + + +
Sbjct: 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141
Query: 132 TITTLTLSG 140
+TTL++S
Sbjct: 142 KLTTLSMSN 150
Score = 84.3 bits (209), Expect = 2e-20
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L + HN + L L + +N+++ + H F + L L +++N
Sbjct: 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
R+VA++ + L LDLSHN L + ++ L+ L LD N I +
Sbjct: 283 RLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLST--- 337
Query: 130 NVTITTLTLSG 140
+ T+ LTLS
Sbjct: 338 HHTLKNLTLSH 348
Score = 78.5 bits (194), Expect = 3e-18
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T+ +++ L +HN + VR +LT L HN + + L +D
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLT--DTAWLLNYPGLVEVD 254
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L++N + + + L L +S+N L AL P+ +L+ L L N + V
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHV-ER 312
Query: 126 VIGDNVTITTLTLSG 140
+ L L
Sbjct: 313 NQPQFDRLENLYLDH 327
Score = 77.8 bits (192), Expect = 4e-18
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L + +++N+ + + +L L +N++ L + + + TL LDL+HN
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN 305
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
++ V + L L L HN + L +L+ L L ND
Sbjct: 306 HLLHVE-RNQPQFDRLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWD 352
Score = 68.1 bits (167), Expect = 1e-14
Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 5/126 (3%)
Query: 20 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-----LSTLSHLDLAHNRIVAV 74
+N + + ID+ + L+ + ++ + +
Sbjct: 1 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60
Query: 75 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTIT 134
A L + L+L+ + + ++Q+L + N I + P V + +T
Sbjct: 61 PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 135 TLTLSG 140
L L
Sbjct: 121 VLVLER 126
Score = 27.7 bits (62), Expect = 1.4
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+ L+ L + HN +++ L +L+ HN D + ++ +
Sbjct: 316 QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD--CNSLRALFRNVARPAVDD 370
Query: 69 NRIVAVSGASLAH 81
L H
Sbjct: 371 ADQHCKIDYQLEH 383
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 100 bits (250), Expect = 5e-26
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Query: 8 RRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R+ SL L + + + GA GL L L+ I + + L L L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ N + S LS+L L + ++ + + ++ L SL EL L N++S + D+
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285
Query: 127 IGDNVTITTLTLSG 140
+ L L
Sbjct: 286 FTPLRYLVELHLHH 299
Score = 98.7 bits (246), Expect = 2e-25
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L +LK L++ + L L L L N + SF LS+L L +
Sbjct: 193 EGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
++++ + + L++L L+L+HN L +L DL TPL+ L EL L N
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 96.0 bits (239), Expect = 2e-24
Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%)
Query: 1 MSIWCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 52
+ CT R LS + L++ N ++ L L L N I +E
Sbjct: 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV 116
Query: 53 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 112
+F L++L+ L+L N + + + +LS L L L +N + ++ + SL L
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176
Query: 113 RLDD-NDISMVTPDVIGDNVTITTLTLSG 140
L + + ++ + L L
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGM 205
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 100 bits (252), Expect = 6e-26
Identities = 25/131 (19%), Positives = 51/131 (38%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+S + L + N +++ + L LT L QI + + +F++ L L L N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ ++ +L+ L L + ++ + K+L+ L L N IS +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 130 NVTITTLTLSG 140
+ L
Sbjct: 152 TEKLKVLDFQN 162
Score = 96.6 bits (241), Expect = 2e-24
Identities = 25/132 (18%), Positives = 50/132 (37%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
RL +L L + Q + +L +L N + + + + L HL
Sbjct: 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
I ++ L + L +L L N + ++ P + L+ L +N I ++ + +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173
Query: 128 GDNVTITTLTLS 139
T L+L+
Sbjct: 174 SSLQQATNLSLN 185
Score = 89.7 bits (223), Expect = 5e-22
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDL 66
R LS L+ L++++N+ S++ A +L L ++ V + S F+ L L L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDDNDISMVT 123
+H+ + S L L L+L N + + L L+ L L D+S +
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 124 PDVIGDNVTITTLTLSG 140
+ + LS
Sbjct: 493 QHAFTSLKMMNHVDLSH 509
Score = 88.5 bits (220), Expect = 1e-21
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI---DVLEDHSFRALSTLSHLDL 66
L LKVL+++H+ GL L L+ N ++ + +S + L L L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ + ++ + L + +DLSHN L + + + ++ LK + L L N IS++ P +
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542
Query: 127 IGDNVTITTLTLSG 140
+ T+ L
Sbjct: 543 LPILSQQRTINLRQ 556
Score = 84.7 bits (210), Expect = 3e-20
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSV---RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 59
L +L+ L++ N F + +L L +L L + ++ H+F +L
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
++H+DL+HNR+ + S +L+HL + L+L+ N + + L+ L + + L N +
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Query: 120 S 120
Sbjct: 560 D 560
Score = 83.9 bits (208), Expect = 6e-20
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 10 LSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLE--DHSFRALSTLSHLDL 66
SL LSI N + + G L L+ L L H+ I+ + + R LS L L+L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPD 125
++N +++ + L LDL+ L+ Q L L+ L L + + + +
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 126 VIGDNVTITTLTLSG 140
+ + L L G
Sbjct: 444 LFDGLPALQHLNLQG 458
Score = 81.2 bits (201), Expect = 4e-19
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
S++ +++ + F ++ L L + L LSTL L L+
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSA 310
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISMV--TPD 125
N+ + S ++ +LT L + N R L + L++L+EL L +DI
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 126 VIGDNVTITTLTLSG 140
+ + + +L LS
Sbjct: 371 QLRNLSHLQSLNLSY 385
Score = 72.4 bits (178), Expect = 6e-16
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 7/137 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH--HNQIDVLEDHSFRALSTLSHLDLA 67
LKVL +N + + ++ L + T+LS + N I +E +F + L+
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFG 210
Query: 68 HNRI--VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK--SLQELRLDDNDISMVT 123
+ V G + + +L ++ + L S++ + L + ++
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 124 PDVIGDNVTITTLTLSG 140
+ + L L+
Sbjct: 271 SNTFHCFSGLQELDLTA 287
Score = 30.4 bits (69), Expect = 0.21
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 87 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
T + + L + L S + L N + + + +T L L+
Sbjct: 16 TYNCENLGLNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 98.5 bits (245), Expect = 4e-25
Identities = 25/132 (18%), Positives = 57/132 (43%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++ K+++ ++ + L ++ L+ + QI+ ++ ++F T+ L +
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N I + ++ LT L L N L +L + + L L + +N++ + D
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 129 DNVTITTLTLSG 140
++ L LS
Sbjct: 169 ATTSLQNLQLSS 180
Score = 93.8 bits (233), Expect = 2e-23
Identities = 29/119 (24%), Positives = 50/119 (42%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+++L++ Q + A A + L N I L H F+ + L+ L L
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N + ++ + LTTL +S+N L + D SLQ L+L N ++ V +
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190
Score = 84.2 bits (208), Expect = 4e-20
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ + L VL + N SS+ RG KLT+LS +N ++ +ED +F+A ++L +L L+
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
NR+ V L+ + +L ++S+N L L +++EL N I++V V
Sbjct: 180 SNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV- 230
Query: 128 GDNVTITTLTLSG 140
NV +T L L
Sbjct: 231 --NVELTILKLQH 241
Score = 82.3 bits (203), Expect = 2e-19
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L + HN + L L + +N+++ + H F + L L +++N
Sbjct: 231 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
R+VA++ + L LDLSHN L + ++ L+ L LD N I +
Sbjct: 289 RLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLST--- 343
Query: 130 NVTITTLTLSG 140
+ T+ LTLS
Sbjct: 344 HHTLKNLTLSH 354
Score = 80.7 bits (199), Expect = 6e-19
Identities = 21/131 (16%), Positives = 48/131 (36%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ I L+ ++ ++ + L + + L+L
Sbjct: 26 DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I + + A+ + L + N +R L + + L L L+ ND+S + + +
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 130 NVTITTLTLSG 140
+TTL++S
Sbjct: 146 TPKLTTLSMSN 156
Score = 76.1 bits (187), Expect = 2e-17
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L + +++N+ + + +L L +N++ L + + + TL LDL+HN
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN 311
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
++ V + L L L HN + L +L+ L L ND
Sbjct: 312 HLLHVE-RNQPQFDRLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWD 358
Score = 75.0 bits (184), Expect = 6e-17
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 7/135 (5%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T+ +++ L +HN + VR +LT L HN + + L +D
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNL--TDTAWLLNYPGLVEVD 260
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L++N + + + L L +S+N L AL P+ +L+ L L N + V +
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN 319
Query: 126 VIGDNVTITTLTLSG 140
+ L L
Sbjct: 320 -QPQFDRLENLYLDH 333
Score = 52.2 bits (125), Expect = 6e-09
Identities = 14/89 (15%), Positives = 30/89 (33%)
Query: 52 DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQE 111
D + + + + G L+N + ++ +R L L+ + ++
Sbjct: 20 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79
Query: 112 LRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L L+D I + TI L +
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Score = 27.2 bits (60), Expect = 2.3
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD---- 65
+LK L+++HN + AL + + D+ D
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401
Query: 66 ------LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
+A +V + S T++ + +TQ PL+ ++L + N++
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
Query: 120 SMVTPDVIGD 129
+ +
Sbjct: 462 RAEVQQLTNE 471
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 98.2 bits (245), Expect = 4e-25
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
SS K + ++ N ++ + + +L L +I+ +ED ++ L LS+L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT-PDVIGD 129
I + S S + L++L L L +L I L +L++L + N I P +
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 130 NVTITTLTLSG 140
+ + LS
Sbjct: 152 LTNLVHVDLSY 162
Score = 92.8 bits (231), Expect = 4e-23
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 1/132 (0%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAH 68
L L L I++ G GL L +L N D + F + L+ LDL+
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
++ +S L L L++SHN L L L SL L N I +
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 129 DNVTITTLTLSG 140
++ L+
Sbjct: 543 FPKSLAFFNLTN 554
Score = 92.0 bits (229), Expect = 6e-23
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
S L+ L ++ + ++ A GL L++L N I SF L++L +L
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDV 126
++ ++ + L L L+++HNF+ + + L +L + L N I +T +
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Query: 127 IG 128
+
Sbjct: 173 LQ 174
Score = 85.1 bits (211), Expect = 2e-20
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 10 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+SL L +A N F A LT L Q++ + F L L L+++H
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
N ++ + + L +L+TLD S N + L KSL L +N ++
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 78.9 bits (195), Expect = 3e-18
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L SL L ++ N S + + G + L L N ++ +F L L HLD
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQ 407
Query: 68 HNRIVAVSGAS-LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN-DISMVTPD 125
H+ + V+ S L L LD+S+ + + L SL L++ N +
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467
Query: 126 VIGDNVTITTLTLSG 140
V + +T L LS
Sbjct: 468 VFANTTNLTFLDLSK 482
Score = 72.8 bits (179), Expect = 4e-16
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
++ ++L L ++ Q + G L +L L+ HN + L+ + L +
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
LS LD + NRI G +L +L++N
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 70.1 bits (172), Expect = 3e-15
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 38 TSLSCH---------------------HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 76
+ C N + +L+ +SF S L LDL+ I +
Sbjct: 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73
Query: 77 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTL 136
+ L +L+ L L+ N +++ + + L SL+ L + ++ + IG +T+ L
Sbjct: 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
Query: 137 TLSG 140
++
Sbjct: 134 NVAH 137
Score = 67.0 bits (164), Expect = 4e-14
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 7/134 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS----HL 64
L +LK L++AHN S + A + L L + +N I + + + L L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFL-RALTQDLITPLKSLQELRLDDNDISMVT 123
D++ N I + + + L L L NF + + + L L RL +
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 124 PDVIGDNVTITTLT 137
I + + L
Sbjct: 246 NLEIFEPSIMEGLC 259
Score = 62.4 bits (152), Expect = 2e-12
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 31/157 (19%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ LSI Q L L SL+ N+ + AL +LS+LDL+ N
Sbjct: 306 HFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRN 360
Query: 70 RIVAVSGASLAHLSN-------------------------LTTLDLSHNFLRALT-QDLI 103
+ S + L L LD H+ L+ +T
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 104 TPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L+ L L + + + + ++ TL ++G
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Score = 55.8 bits (135), Expect = 3e-10
Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 14/141 (9%)
Query: 9 RLSSLKVLSIAHNQFSS-VRRGALAGLDKLTSLS------CHHNQIDVLEDHSFRALSTL 61
+ L L++ N SS + + L L L +++ E L +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 62 S--HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
+ L + + L+N++ + L+ ++ L + + Q L + +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQL 319
Query: 120 SMVTPDVIGDNVTITTLTLSG 140
D + +LTL+
Sbjct: 320 KQFPT---LDLPFLKSLTLTM 337
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 95.6 bits (238), Expect = 3e-24
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S K L ++ N + + +L L +I +ED ++++LS LS L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV-TPDVIGD 129
I +++ + + LS+L L L +L I LK+L+EL + N I P+ +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 130 NVTITTLTLSG 140
+ L LS
Sbjct: 148 LTNLEHLDLSS 158
Score = 89.8 bits (223), Expect = 4e-22
Identities = 34/141 (24%), Positives = 49/141 (34%), Gaps = 2/141 (1%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
++ L L+ L H+ + L L L H V + F LS+
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 61 LSHLDLAHNRIVA-VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
L L +A N L NLT LDLS L L+ L SLQ L + N +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 120 SMVTPDVIGDNVTITTLTLSG 140
V + ++ + L
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHT 527
Score = 89.8 bits (223), Expect = 4e-22
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDV 126
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 127 IGDNVTITTLTLS 139
+ + L LS
Sbjct: 169 LRVLHQMPLLNLS 181
Score = 85.5 bits (212), Expect = 1e-20
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDL 66
L +L L I+H G GL L L N + F L L+ LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+ ++ +S + LS+L L+++ N L+++ + L SLQ++ L N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 82.5 bits (204), Expect = 2e-19
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSH 63
+ +SLK L ++ N ++ GL++L L H+ + + + S F +L L +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL-RALTQDLITPLKSLQELRLDDNDISMV 122
LD++H LS+L L ++ N D+ T L++L L L + +
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 123 TPDVIGDNVTITTLTLSG 140
+P ++ L ++
Sbjct: 486 SPTAFNSLSSLQVLNMAS 503
Score = 72.4 bits (178), Expect = 5e-16
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE--DHSFRALSTLSHLDL 66
+L SLK L+ N+ + + L L L N + S ++L +LDL
Sbjct: 323 KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPD 125
+ N ++ +S L L LD H+ L+ ++ + L++L L + +
Sbjct: 381 SFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 126 VIGDNVTITTLTLSG 140
+ ++ L ++G
Sbjct: 440 IFNGLSSLEVLKMAG 454
Score = 72.1 bits (177), Expect = 6e-16
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDL 66
LSSL+ L +S+ + L L L+ HN I + F L+ L HLDL
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 67 AHNRIVAVSGASLAHLSNLT----TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
+ N+I ++ L L + +LDLS N + + + L +L L +N S+
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN 215
Query: 123 TPDVIGDNVTITTL 136
+ +
Sbjct: 216 VMKTCIQGLAGLEV 229
Score = 59.3 bits (144), Expect = 2e-11
Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 10/133 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+++ S+ V+ + L + + L +L L N
Sbjct: 281 LTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSN 335
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLR--ALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+ S L +L LDLS N L SL+ L L N + +
Sbjct: 336 KGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNF 392
Query: 128 GDNVTITTLTLSG 140
+ L
Sbjct: 393 LGLEQLEHLDFQH 405
Score = 59.3 bits (144), Expect = 2e-11
Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 61
L++L+ L ++ N+ S+ L L ++ SL N ++ ++ +F+ + L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202
Query: 62 SHLDLAHNRI-VAVSGASLAHLSNLTTLDL------SHNFLRALTQDLITPLKSLQELRL 114
L L +N + V + L+ L L + L + + L +L
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 115 DDNDISMVTPDVIG 128
+ D+I
Sbjct: 263 RLAYLDYYLDDIID 276
Score = 54.7 bits (132), Expect = 8e-10
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L +L L ++ Q + A L L L+ NQ+ + D F L++L + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 68 HNRI 71
N
Sbjct: 527 TNPW 530
Score = 35.8 bits (83), Expect = 0.003
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
LSSL+VL++A NQ SV G L L + H N D
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 28.1 bits (63), Expect = 0.91
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 21/76 (27%)
Query: 86 TTLDLSH---------------------NFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
T N LR L LQ L L +I +
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 125 DVIGDNVTITTLTLSG 140
++TL L+G
Sbjct: 70 GAYQSLSHLSTLILTG 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 94.5 bits (235), Expect = 4e-24
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 5 CTVRRLSS--------LKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSF 55
C+ ++L + +L ++HN S +R L L SL HN ++ + +F
Sbjct: 25 CSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84
Query: 56 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115
+ L +LDL+ N + + + L L L L +N + + ++ + LQ+L L
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 116 DNDISMVTPDVIGDNVTITTLTL 138
N IS ++I D + L L
Sbjct: 145 QNQISRFPVELIKDGNKLPKLML 167
Score = 93.0 bits (231), Expect = 1e-23
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
RL++L L ++HN + + A + L L N + L++ F L L L L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP---LKSLQELRLDDNDISMVTP 124
+N IV V + ++ L L LS N + +LI L L L L N + +
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 125 DVIGDNVTITTLTLS 139
+ L
Sbjct: 181 TDLQKLPAWVKNGLY 195
Score = 88.4 bits (219), Expect = 6e-22
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ +L+ L ++ N ++ + L L L ++N I V++ ++F ++ L L L+
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 68 HNRIVAVSG---ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQE--LRLDDN 117
N+I L L LDLS N L+ L + L + + L L +N
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 73.3 bits (180), Expect = 2e-16
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 37 LTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 95
L HN + L + + L+ L L L+HN + +S + + NL LDLS N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 96 RALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L + L + L++L+ L L +N I +V + D + L LS
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 94.0 bits (234), Expect = 1e-23
Identities = 32/130 (24%), Positives = 64/130 (49%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S +K ++ ++ ++ + + L L+ N+I+ ++D++F L+ L L+L+ N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN 130
+ ++ +L L LDLS+N +RAL L +L+EL LD N + V +
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 131 VTITTLTLSG 140
++ + L
Sbjct: 395 TSLQKIWLHT 404
Score = 92.1 bits (229), Expect = 5e-23
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ L+ L++A N+ + + A GL L L+ N + ++ F L L LDL++N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
I A+ S L NL L L N L+++ + L SLQ++ L N
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 86.7 bits (215), Expect = 4e-21
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 2 SIWCTVRRLSS-------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLEDH 53
+ C R L + + ++ N + + + + L L L V+ ++
Sbjct: 14 NAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA--LTQDLITPLKSLQE 111
+FR LS+L L L +N+ + + + L+NL L L+ L L+ + PL SL+
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 112 LRLDDNDISMVTPDVIGDNVT-ITTLTLSG 140
L L DN+I + P N+ L L+
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163
Score = 78.2 bits (193), Expect = 4e-18
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 4/136 (2%)
Query: 8 RRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
RL L+ L + +R GL L L +NQ LE +F L+ L L L
Sbjct: 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110
Query: 67 AHNRI--VAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVT 123
+ +SG L++L L L N ++ + ++ L L N + +
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 124 PDVIGDNVTITTLTLS 139
+ + + L
Sbjct: 171 EEDLLNFQGKHFTLLR 186
Score = 70.2 bits (172), Expect = 3e-15
Identities = 26/86 (30%), Positives = 38/86 (44%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+ L L+++ N S+ LDKL L +N I L D SF L L L L
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHN 93
N++ +V L++L + L N
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 57.8 bits (140), Expect = 7e-11
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 49/181 (27%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKL----------TSLSCHHNQIDVLEDHSFRAL 58
+ VL + N+ S+ L T + + + +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 59 STLSHLDLAHNRIVAVSGASLAHL------------------------------------ 82
++++ LDL+ N
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 83 ---SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
S + T DLS + + AL + + + L++L L N+I+ + + + L LS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 140 G 140
Sbjct: 332 Q 332
Score = 57.1 bits (138), Expect = 9e-11
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 8 RRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ L+SL++L + N ++ + + L N++ + + L
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
LS++T D++ +L S+ L L N
Sbjct: 186 --------------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231
Query: 127 IGDNVTITTL 136
D + T +
Sbjct: 232 FFDAIAGTKI 241
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
L +LK L++ NQ SV G L L + H N D
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 93.6 bits (233), Expect = 2e-23
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S K L ++ N + + +L L +I +ED ++++LS LS L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT-PDVIGD 129
I +++ + + LS+L L L +L I LK+L+EL + N I P+ +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 130 NVTITTLTLSG 140
+ L LS
Sbjct: 148 LTNLEHLDLSS 158
Score = 89.3 bits (222), Expect = 6e-22
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 2/135 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDL 66
L +L L I+H G GL L L N + F L L+ LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ ++ +S + LS+L L++SHN +L L SLQ L N I
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 127 IGDNVT-ITTLTLSG 140
+ + + L L+
Sbjct: 538 LQHFPSSLAFLNLTQ 552
Score = 86.6 bits (215), Expect = 6e-21
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+VL ++ + ++ GA L L++L N I L +F LS+L L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDV 126
+ ++ + HL L L+++HN +++ + + L +L+ L L N I +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 127 IG 128
+
Sbjct: 169 LR 170
Score = 76.6 bits (189), Expect = 2e-17
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 10 LSSLKVLSIAHNQ--FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L SL+ L ++ N F + G L L N + + +F L L HLD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQ 404
Query: 68 HNRIVAVSGAS-LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS-MVTPD 125
H+ + +S S L NL LD+SH R + L SL+ L++ N PD
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 126 VIGDNVTITTLTLSG 140
+ + +T L LS
Sbjct: 465 IFTELRNLTFLDLSQ 479
Score = 66.2 bits (162), Expect = 7e-14
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
+ L +L L ++ Q + A L L L+ HN L+ ++ L++L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 63 HLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 93
LD + N I+ L H S+L L+L+ N
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 64.7 bits (158), Expect = 3e-13
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 7/134 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS----HL 64
L +LK L++AHN S + + L L L N+I + R L + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA-LTQDLITPLKSLQELRLDDNDISMVT 123
DL+ N + + + + L L L +NF + + I L L+ RL +
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 124 PDVIGDNVTITTLT 137
D + L
Sbjct: 242 NLEKFDKSALEGLC 255
Score = 50.8 bits (122), Expect = 1e-08
Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 32/161 (19%)
Query: 10 LSSLKVLSIAHNQFSSVRR------GALAGLDKLTSLSCHHNQIDVLED---HSFRALST 60
L+ L+V + +F + AL GL LT +D D F L+
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL------------------ 102
+S L I V ++ L+L +
Sbjct: 284 VSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341
Query: 103 -ITPLKSLQELRLDDNDISM--VTPDVIGDNVTITTLTLSG 140
L SL+ L L N +S ++ L LS
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Score = 49.6 bits (119), Expect = 5e-08
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 12/149 (8%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQI---DVLEDHSFRA 57
I + L L++ +N S +V + + GL L + LE A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 58 LSTLSHLDLAHNRIVAVSG------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQE 111
L L +L + R+ + L+N+++ L + + + Q
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQH 308
Query: 112 LRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L L + + +T + G
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 92.0 bits (229), Expect = 2e-23
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
SL L + N+ + V +L GL+ L L N I +++ S L L L +N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISM-- 121
++V V G LA + + L +N + A+ + P S + L N +
Sbjct: 251 KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Query: 122 VTPDVIGDNVTITTLTLSG 140
+ P + L
Sbjct: 310 IQPSTFRCVYVRAAVQLGN 328
Score = 91.2 bits (227), Expect = 4e-23
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 8 RRLSSLKVLSIAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
L+ + V+ + N S + GA G+ KL+ + I + +L+ L
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELH 198
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L N+I V ASL L+NL L LS N + A+ + L+EL L++N + V P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PG 257
Query: 126 VIGDNVTITTLTLSG 140
+ D+ I + L
Sbjct: 258 GLADHKYIQVVYLHN 272
Score = 83.5 bits (207), Expect = 3e-20
Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 13/149 (8%)
Query: 2 SIWCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
+ C+ L +L + +N+ + ++ G L L +L +N+I +
Sbjct: 35 VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+F L L L L+ N++ + L L + N + + + + L + +
Sbjct: 95 AFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151
Query: 114 LDDNDI--SMVTPDVIGDNVTITTLTLSG 140
L N + S + ++ + ++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIAD 180
Score = 78.9 bits (195), Expect = 2e-18
Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L++L L ++ N S+V G+LA L L ++N++ + + + L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLH 271
Query: 68 HNRIVAVSGASLA------HLSNLTTLDLSHNFLRA--LTQDLITPLKSLQELRLDDN 117
+N I A+ ++ + + L N ++ + + ++L +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 47.7 bits (114), Expect = 2e-07
Identities = 8/69 (11%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALA------GLDKLTSLSCHHNQIDV--LEDHSFRALSTL 61
++V+ + +N S++ + +S N + ++ +FR +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
Query: 62 SHLDLAHNR 70
+ + L + +
Sbjct: 322 AAVQLGNYK 330
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 91.2 bits (227), Expect = 4e-23
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+L L + HN+ ++ L KL L HNQI ++E+ S L TL L L +N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK------SLQELRLDDNDISMVT 123
++ V L L L + L N + + + P+ + L +N +
Sbjct: 252 KLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310
Score = 88.9 bits (221), Expect = 3e-22
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 23/153 (15%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFR----------- 56
SSL L I N+ V +G +GL + + N + E +F
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 57 ---------ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 107
TL+ L L HN+I A+ L S L L L HN +R + ++ L
Sbjct: 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241
Query: 108 SLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+L+EL LD+N +S V P + D + + L
Sbjct: 242 TLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHT 273
Score = 83.5 bits (207), Expect = 3e-20
Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 2 SIWCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
+ C+ L + +L + +N S +R+ GL L +L +N+I + +
Sbjct: 37 VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+F L L L ++ N +V + S+L L + N +R + + + + L+++ +
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153
Query: 114 LDDNDISMVT-PDVIGDNVTITTLTLSG 140
+ N + D + + L +S
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISE 181
Score = 57.3 bits (139), Expect = 6e-11
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR------ALSTLSH 63
L +L+ L + +N+ S V G L L L + H N I + + F + +
Sbjct: 240 LPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298
Query: 64 LDLAHNRI--VAVSGASLAHLSNLTTLDLSHN 93
+ L +N + V A+ +++ + +
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 43.9 bits (104), Expect = 4e-06
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLD------KLTSLSCHHNQIDV--LEDHSFRALSTL 61
L L+V+ + N + V + +S +N + ++ +FR ++
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 62 SHLDLAHNR 70
+ + +
Sbjct: 323 LAIQFGNYK 331
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 90.9 bits (226), Expect = 2e-22
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+++K L ++ N+ + + G L L L ++I+ +E +F +L +L HLDL+ N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQD-LITPLKSLQELRLDD-NDISMVTPDVI 127
+ ++S + LS+L L+L N + L L L +LQ LR+ + S +
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 128 GDNVTITTLTLSG 140
++ L +
Sbjct: 145 AGLTSLNELEIKA 157
Score = 89.4 bits (222), Expect = 6e-22
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
R ++L+VL + ++ +++ A L L L N + L F LS+L +L+L
Sbjct: 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 68 HNRIVAVS-GASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
N + + +L+NL TL + + + + L SL EL + +
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 126 VIGDNVTITTLTLS 139
+ I LTL
Sbjct: 167 SLKSIRDIHHLTLH 180
Score = 77.5 bits (191), Expect = 9e-18
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ L +L L I+ N F + +K+ L+ I V++ TL LD
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLD 437
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
+++N + + S L L L +S N L+ L + L +++ N + V
Sbjct: 438 VSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDG 491
Query: 126 VIGDNVTITTLTLSG 140
+ ++ + L
Sbjct: 492 IFDRLTSLQKIWLHT 506
Score = 75.5 bits (186), Expect = 5e-17
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Query: 8 RRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
L++L+ L I + FS +RR AGL L L + + S +++ + HL L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ + LS++ L+L L + + ++ S++T +
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239
Query: 127 IGDNVTITTLTLS 139
+ + + L
Sbjct: 240 FNELLKLLRYILE 252
Score = 73.2 bits (180), Expect = 3e-16
Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 61
+ + + ++ L+++ V+ L L +N +D L L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFSLF----LPRL 453
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
L ++ N++ + A + L + +S N L+++ + L SLQ++ L N
Sbjct: 454 QELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 67.1 bits (164), Expect = 3e-14
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 5/137 (3%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+ + ++ V + L + + L + + + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRAL---TQDLITPLKSLQELRLDDNDISMV--T 123
+++ V + HL +L LDLS N + SLQ L L N + + T
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 124 PDVIGDNVTITTLTLSG 140
+++ +T+L +S
Sbjct: 380 GEILLTLKNLTSLDISR 396
Score = 66.7 bits (163), Expect = 4e-14
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVR---RGALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLS 62
+ L SL+ L ++ N L +L N + ++ L L+
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
LD++ N + S + L+LS +R + + ++L+ L + +N++
Sbjct: 391 SLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSF 446
Query: 123 TPD 125
+
Sbjct: 447 SLF 449
Score = 62.0 bits (151), Expect = 2e-12
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 3/132 (2%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
S L + + ++ DV+ + T+ L + +
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298
Query: 72 VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS---MVTPDVIG 128
+ L + + + ++ + + LKSL+ L L +N + + G
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Query: 129 DNVTITTLTLSG 140
++ TL LS
Sbjct: 359 AWPSLQTLVLSQ 370
Score = 57.8 bits (140), Expect = 6e-11
Identities = 19/114 (16%), Positives = 42/114 (36%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+SL L I + + +L + + L+ H ++ L + LS++ +L+L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
+ + L + + LT + L L L+ +++
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258
Score = 47.4 bits (113), Expect = 2e-07
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L+ L I+ N+ ++ +L L + NQ+ + D F L++L + L
Sbjct: 449 FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506
Query: 69 NRIV 72
N
Sbjct: 507 NPWD 510
Score = 30.5 bits (69), Expect = 0.15
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
D ++ L +++ L L N I+ + + + L L
Sbjct: 5 DASGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 88.5 bits (220), Expect = 2e-22
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 2 SIWCTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
+ C K L ++ N + + +L L +I +ED
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
++++LS LS L L N I +++ + + LS+L L L +L I LK+L+EL
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 114 LDDNDISMV-TPDVIGDNVTITTLTLSG 140
+ N I P+ + + L LS
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Score = 81.2 bits (201), Expect = 1e-19
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDL 66
LSSL+ L +S+ + L L L+ HN I + F L+ L HLDL
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 67 AHNRIVAVSGASLAHLSNLT----TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
+ N+I ++ L L + +LDLS N + + ++ L+EL LD N + V
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSV 215
Query: 123 TPDVIGDNVTITTLTLSG 140
+ ++ + L
Sbjct: 216 PDGIFDRLTSLQKIWLHT 233
Score = 74.2 bits (183), Expect = 4e-17
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 9 RLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL----SH 63
L +LK L++AHN S + + L L L N+I + R L +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
LDL+ N + + + + L L L N L+++ + L SLQ++ L N
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 33.4 bits (77), Expect = 0.014
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
LK L++ NQ SV G L L + H N D
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 88.1 bits (219), Expect = 3e-22
Identities = 32/132 (24%), Positives = 58/132 (43%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L +L+ L + N+ ++ G L L L NQ+ L F +L+ L++L L +
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N + ++ L++L L L +N L+ + + L L+ L+LD+N + V
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 129 DNVTITTLTLSG 140
+ L L
Sbjct: 203 SLEKLKMLQLQE 214
Score = 86.2 bits (214), Expect = 1e-21
Identities = 37/132 (28%), Positives = 62/132 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
RL+ L++L + N+ ++ G L L +L N++ L F L L+ L L
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
N++ ++ L+ LT L L +N L++L + + L SL+ELRL +N + V
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 128 GDNVTITTLTLS 139
+ TL L
Sbjct: 178 DKLTELKTLKLD 189
Score = 85.8 bits (213), Expect = 2e-21
Identities = 33/109 (30%), Positives = 55/109 (50%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+L +L L + NQ S+ L KLT LS +N++ L F L++L L L +
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N++ V + L+ L TL L +N L+ + + L+ L+ L+L +N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 78.1 bits (193), Expect = 2e-18
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 8/144 (5%)
Query: 5 CTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C+ ++L++ K L + N+ SS+ A L KL L + N++ L F+
Sbjct: 23 CSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
L L L + N++ A+ L NL L L N L++L + L L L L
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 117 NDISMVTPDVIGDNVTITTLTLSG 140
N++ + V ++ L L
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYN 166
Score = 52.7 bits (127), Expect = 2e-09
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+L+SLK L + +NQ V GA L +L +L +NQ+ + + +F +L L L L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 68 HN 69
N
Sbjct: 214 EN 215
Score = 35.7 bits (83), Expect = 0.002
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L+ LK L + +NQ V GA L+KL L N D
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 89.9 bits (223), Expect = 4e-22
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFRALSTLSHLDL 66
+ L++ + L ++ N +V + L++L L + ++ +FR L L LDL
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLR--ALTQDLITPLKSLQELRLDDNDISMVTP 124
++I + + L +L L L L L LK+L L L N I +
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 125 -DVIGDNVTITTLTLSG 140
G ++ ++ S
Sbjct: 141 HPSFGKLNSLKSIDFSS 157
Score = 89.1 bits (221), Expect = 8e-22
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
SS++ L ++H S+ L L L+ +N+I+ + D +F L L L+L++N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
+ + ++ L + +DL N + + L+ LQ L L DN ++ +
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Score = 82.9 bits (205), Expect = 1e-19
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFRALSTLSHLD 65
R L +L++L + ++ + A GL L L + + VL+D FR L L+ LD
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129
Query: 66 LAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPL--KSLQELRLDDNDISMV 122
L+ N+I ++ S L++L ++D S N + + + + PL K+L L N +
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 123 TPDVIG------DNVTITTLTLSG 140
G N+ + L +SG
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSG 213
Score = 79.1 bits (195), Expect = 2e-18
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLDLAHN 69
++ + N S + +L + + I + ++F L S++ HLDL+H
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ +++ L +L L+L++N + + + L +LQ L L N + +
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Query: 130 NVTITTLTLSG 140
+ + L
Sbjct: 337 LPKVAYIDLQK 347
Score = 79.1 bits (195), Expect = 2e-18
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHS----- 54
+ I + R+ L++L + N+FSS + L L N + + +
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
Query: 55 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
F LS L L L HN + ++ +HL+ L L L+ N L L+ + + +L+ L +
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDI 533
Query: 115 DDNDISMVTPDV 126
N + PDV
Sbjct: 534 SRNQLLAPNPDV 545
Score = 76.0 bits (187), Expect = 3e-17
Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 12 SLKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAHN 69
+ ++ ++ N+ ++ L + L L + N+ D + +L L L N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 70 RIVAVSGASL-----AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
+ L LS+L L L+HN+L +L + + L +L+ L L+ N +++++
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
Query: 125 DVIGDNVTI 133
+ + N+ I
Sbjct: 522 NDLPANLEI 530
Score = 69.1 bits (169), Expect = 9e-15
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 5 CTVRRLSSLKVLSIAHNQF-----SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 59
T SL+ L + N + + GL L L +HN ++ L F L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
L L L NR+ +S L +NL LD+S N L A D+ L L
Sbjct: 505 ALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552
Score = 66.8 bits (163), Expect = 5e-14
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH--------SFRALSTL 61
L + + + N + ++ L+KL +L N + + S L TL
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396
Query: 62 S-------HLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQD-LITPLKSLQEL 112
+ L+ NR+ + L + +L L L+ N + + D + SL++L
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 113 RLDDNDISMVTPDVIGDNV 131
L +N + + + +V
Sbjct: 457 FLGENMLQLAWETELCWDV 475
Score = 64.8 bits (158), Expect = 2e-13
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 22/155 (14%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFRALS------ 59
+L+SLK + + NQ V L L L+ S N + +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 60 TLSHLDLAHNRIVAVSGA------------SLAHLSNLTTLDLSHNFLRALTQDLITPLK 107
L LD++ N SL ++ + ++ Q+ L
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264
Query: 108 --SLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
S++ L L + + V + L L+
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Score = 64.1 bits (156), Expect = 5e-13
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 23/158 (14%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALS--TLS 62
R L +L L ++ NQ S+ + L+ L S+ NQI ++ +H L TLS
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177
Query: 63 HLDLAHNRIVAVSGASLAHLSN------LTTLDLSHNFLRALTQDL------------IT 104
LA N + + N L LD+S N +
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 105 PLKSLQELRLDDNDISMVTPDVIG--DNVTITTLTLSG 140
+ ++I + ++ L LS
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Score = 61.7 bits (150), Expect = 2e-12
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL-RALTQ 100
+ + + L+T L L+ N I V+ +S L L L+L + + +
Sbjct: 11 YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 101 DLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L +L+ L L + I + PD + L L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106
Score = 54.8 bits (132), Expect = 8e-10
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 63
W LS L+VL + HN +S+ G + L L LS + N++ VL + + L
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEI 530
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
LD++ N+++A + +L+ LD++HN
Sbjct: 531 LDISRNQLLAP---NPDVFVSLSVLDITHN 557
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 86.2 bits (214), Expect = 5e-22
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L+ + +++NQ S + A GL L SL + N+I L F L +L L L
Sbjct: 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N+I + + L NL L L N L+ + + +PL+++Q + L N
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 85.9 bits (213), Expect = 7e-22
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 8/144 (5%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C + L+ + + + N + GA + KL + +NQI L +F+
Sbjct: 18 CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
L +L+ L L N+I + + L +L L L+ N + L D L +L L L D
Sbjct: 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137
Query: 117 NDISMVTPDVIGDNVTITTLTLSG 140
N + + I T+ L+
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQ 161
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+ L +L +LS+ N+ ++ +G + L + ++ N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 87.5 bits (217), Expect = 6e-22
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L L ++HNQ S+ L LT L N++ L + R L L L L
Sbjct: 75 TLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N + + L L L L++N L L L+ L++L L L +N + + P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFF 192
Query: 129 DNVTITTLTLSG 140
+ + L G
Sbjct: 193 GSHLLPFAFLHG 204
Score = 83.2 bits (206), Expect = 2e-20
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ L +L VL ++ N+ +S+ GAL GL +L L N++ L L L LA
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+N + + L L NL TL L N L + + L L N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGN 205
Score = 80.2 bits (198), Expect = 3e-19
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
+L ++ N + L +LT L+ ++ L+ L L LDL+HN+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQ 88
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN 130
+ ++ L LT LD+S N L +L + L LQEL L N++ + P ++
Sbjct: 89 LQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 131 VTITTLTLSG 140
+ L+L+
Sbjct: 148 PKLEKLSLAN 157
Score = 50.5 bits (121), Expect = 2e-08
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
++C + L + L L+ N + S A+L + LT L+L L
Sbjct: 12 HLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L + L L L L N + + P + +T L +S
Sbjct: 69 KL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVS 108
Score = 31.6 bits (72), Expect = 0.067
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+++ ++ L AL DL K L L +N + + + +T L L
Sbjct: 9 VASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 85.9 bits (213), Expect = 7e-22
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
++L L+ ++ ++N+ + + GA G + + N+++ ++ F+ L +L L L
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
NRI V S LS++ L L N + + L SL L L N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 81.6 bits (202), Expect = 3e-20
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSF 55
C+ ++L+ + L + +N+F+ + G L +L ++ +N+I +E+ +F
Sbjct: 18 CSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77
Query: 56 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115
S ++ + L NR+ V L +L TL L N + + D L S++ L L
Sbjct: 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137
Query: 116 DNDISMVTPDVIGDNVTITTLTLSG 140
DN I+ V P +++TL L
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLA 162
Score = 38.1 bits (89), Expect = 3e-04
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
LSS+++LS+ NQ ++V GA L L++L+ N +
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 87.1 bits (216), Expect = 2e-21
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 9/140 (6%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L+ L I + S +L + ++ L H Q +L + S++ L+L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 69 NR--------IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+ SL + ++ L + L+ + L EL N +
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLK 290
Query: 121 MVTPDVIGDNVTITTLTLSG 140
V + ++ + L
Sbjct: 291 SVPDGIFDRLTSLQKIWLHT 310
Score = 84.0 bits (208), Expect = 2e-20
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 34/170 (20%)
Query: 5 CTVRRLSS--------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
+ L+S +K L +++N+ + + L L +L N I+ +E+ SF
Sbjct: 38 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN----------------------- 93
+L +L HLDL++N + +S + LS+LT L+L N
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
Query: 94 ---FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ + L L+EL +D +D+ P + ++ L L
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Score = 76.3 bits (188), Expect = 2e-17
Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 8 RRLSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
L+ L++L + + F+ ++R AGL L L + + E S +++ +SHL L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLR--------ALTQDLITPLKSLQELRLDDND 118
+ + + + S++ L+L L + + + + +++ D
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265
Query: 119 ISMVTPDVIGDNVTITTLTLSG 140
+ V ++ + L S
Sbjct: 266 LFQV-MKLLNQISGLLELEFSR 286
Score = 34.7 bits (80), Expect = 0.006
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 45
++S L L + NQ SV G L L + H N
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 86.2 bits (214), Expect = 2e-21
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 7/117 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ K+ + + + L N + + + L L+L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+ L LS L TLDL++N+++ + S++ L +N+IS V+
Sbjct: 69 VLYETL--DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSR 118
Score = 83.1 bits (206), Expect = 3e-20
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ S++ L A+N S V G ++ +N+I +L D S + +LD
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 66 LAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
L N I V+ A L L+L +NF+ + L+ L L N ++ +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFM-G 207
Query: 125 DVIGDNVTITTLTLSG 140
+T ++L
Sbjct: 208 PEFQSAAGVTWISLRN 223
Score = 82.0 bits (203), Expect = 8e-20
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ ++K L ++ N S + LA KL L+ N + D +LSTL LDL
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+N + L ++ TL ++N + ++ + + + L +N I+M+
Sbjct: 89 NNYV-----QELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE 140
Query: 128 GDNVTITTLTLSG 140
G + L L
Sbjct: 141 GCRSRVQYLDLKL 153
Score = 77.7 bits (192), Expect = 4e-18
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
LS+L+ L + +N L + +L +N I + + ++ LA
Sbjct: 77 ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLA 128
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDV 126
+N+I + S + LDL N + + +L +L+ L L N I V V
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188
Score = 77.3 bits (191), Expect = 4e-18
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Query: 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAG-LDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
S ++ L + N+ +V LA D L L+ +N I ++ + L
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLK 194
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
LDL+ N++ + + +T + L +N L + + + ++L+ L N
Sbjct: 195 TLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCG 252
Query: 123 T-PDVIGDNVTITTLTLS 139
T D N + T+
Sbjct: 253 TLRDFFSKNQRVQTVAKQ 270
Score = 69.2 bits (170), Expect = 4e-15
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
++ + + ++ + LDL+ N + +S A LA + L L+LS N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L + L +L+ L L++N + + +I TL +
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN 108
Score = 60.4 bits (147), Expect = 6e-12
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 55 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
+ + + + + + N+ LDLS N L ++ + P L+ L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 115 DDNDISMVTPDVIGDNVTITTLTLSG 140
N + + T+ TL L+
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNN 89
Score = 30.3 bits (69), Expect = 0.17
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
I +R +L+ + N F R + ++ +++ + L + +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTV 285
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92
+ + L L H
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317
Score = 27.6 bits (62), Expect = 1.2
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 100 QDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
++ + ++ D+ + + + L LSG
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 84.4 bits (208), Expect = 3e-20
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L L + N+ + +L L KL SLS HN I + L L L L +N
Sbjct: 86 LKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNN 141
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I ++ L+ L+ L TL L N + + + L LQ L L N IS + +
Sbjct: 142 KITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAG 195
Query: 130 NVTITTLTLSG 140
+ L L
Sbjct: 196 LKNLDVLELFS 206
Score = 79.8 bits (196), Expect = 1e-18
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+S+ + ++ SV+ + L +T L + N++ ++ L L L L N
Sbjct: 42 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I +S L L L +L L HN + + + L L+ L L +N I+ +T +
Sbjct: 98 KIKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSR 151
Query: 130 NVTITTLTLSG 140
+ TL+L
Sbjct: 152 LTKLDTLSLED 162
Score = 74.0 bits (181), Expect = 2e-16
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L L+ L + +N+ + + L+ L KL +LS NQI + L+ L +L L+ N
Sbjct: 130 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 185
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
I + LA L NL L+L + + L ++ D S+VTP++I D
Sbjct: 186 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN--TDGSLVTPEIISD 241
Query: 130 NVTITTLTLS 139
+ +
Sbjct: 242 DGDYEKPNVK 251
Score = 67.8 bits (165), Expect = 2e-14
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
+ + + + L+++ + ++ I +V G + +L N+T L L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 72
Query: 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ N L + +T LK+L L LD+N I ++ + D + +L+L
Sbjct: 73 NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 83.4 bits (206), Expect = 7e-20
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ K+ + + + L N + + + L L+L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
+ L LS L TLDL++N+++ + S++ L +N+IS V+
Sbjct: 69 VLYETL--DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS 117
Score = 81.0 bits (200), Expect = 4e-19
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ S++ L A+N S V G ++ +N+I +L D S + +LD
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 66 LAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
L N I V+ A L L+L +NF+ + + L+ L L N ++ +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFM-G 207
Query: 125 DVIGDNVTITTLTLSG 140
+T ++L
Sbjct: 208 PEFQSAAGVTWISLRN 223
Score = 79.1 bits (195), Expect = 2e-18
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ ++K L ++ N S + LA KL L+ N + D +LSTL LDL
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+N + L ++ TL ++N + ++ + + + L +N I+M+
Sbjct: 89 NNYV-----QELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE 140
Query: 128 GDNVTITTLTLSG 140
G + L L
Sbjct: 141 GCRSRVQYLDLKL 153
Score = 74.5 bits (183), Expect = 9e-17
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS+L+ L + +N L + +L +N I + + ++ LA+N
Sbjct: 79 LSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDV 126
+I + S + LDL N + + +L +L+ L L N I V V
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188
Score = 73.0 bits (179), Expect = 3e-16
Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAG-LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
S ++ L + N+ +V LA D L L+ +N I ++ + L LDL+
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT-PDVI 127
N++ + + +T + L +N L + + + ++L+ L N T D
Sbjct: 201 NKLAFMG-PEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFF 258
Query: 128 GDNVTITTLTLS 139
N + T+
Sbjct: 259 SKNQRVQTVAKQ 270
Score = 57.9 bits (140), Expect = 5e-11
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 55 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
+ + + + + + N+ LDLS N L ++ + P L+ L L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 115 DDNDISMVTPDVIGDNVTITTLTLSG 140
N + + T+ TL L+
Sbjct: 66 SSNVLYETLD--LESLSTLRTLDLNN 89
Score = 51.4 bits (123), Expect = 1e-08
Identities = 10/135 (7%), Positives = 28/135 (20%), Gaps = 4/135 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ +V ++A + T + L L L + A
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Query: 70 RI----VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
+ + +D R + + ++ L + +
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 126 VIGDNVTITTLTLSG 140
+ +
Sbjct: 379 GRRAHAELDGTLQQA 393
Score = 50.2 bits (120), Expect = 3e-08
Identities = 14/162 (8%), Positives = 34/162 (20%), Gaps = 28/162 (17%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID----------------- 48
+ + + +S+ +N+ + + AL L N
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 49 ------VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
L + + + + L L + + + +
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327
Query: 103 ITP----LKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ +E+ V V TL
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369
Score = 46.0 bits (109), Expect = 7e-07
Identities = 12/113 (10%), Positives = 23/113 (20%), Gaps = 6/113 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTS-----LSCHHNQIDVLEDHSFRALSTLSHL 64
+ + + L L LS ++ + LE + +
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREI 341
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
D + V TL+ L + L
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394
Score = 44.1 bits (104), Expect = 3e-06
Identities = 12/116 (10%), Positives = 23/116 (19%), Gaps = 2/116 (1%)
Query: 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
+ +LS ++ + + + Q + D L
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITL 365
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+ + + L L Q LQ LR
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYE 420
Score = 39.4 bits (92), Expect = 2e-04
Identities = 8/111 (7%), Positives = 30/111 (27%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ + + Q+ +V +L +D + RA + L
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+ + A+ + + + ++++ + + +
Sbjct: 395 GQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
Score = 25.2 bits (55), Expect = 8.9
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 100 QDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
++ + ++ D+ + + + L LSG
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 81.8 bits (203), Expect = 1e-19
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++ L L I +N+ + + LA L +LT L NQI + + + L+ L L++ N
Sbjct: 220 MTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSN 275
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I +S L +LS L +L L++N L ++I L +L L L N I+ + P +
Sbjct: 276 QISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331
Query: 130 NVTITTLTLSG 140
+ + +
Sbjct: 332 LSKMDSADFAN 342
Score = 74.9 bits (185), Expect = 5e-17
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++L+ L++ NQ + + L+ L KLT+L N+I + + + L+ L L L +
Sbjct: 65 LTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED 120
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
I +S LA+L+ + +L+L N + L + L L + ++ + VTP I +
Sbjct: 121 NISDIS--PLANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDVTP--IAN 175
Query: 130 NVTITTLTLSG 140
+ +L+L+
Sbjct: 176 LTDLYSLSLNY 186
Score = 74.5 bits (184), Expect = 6e-17
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS L L I NQ S + A+ L KL L+ NQI + LS L+ L L +N
Sbjct: 242 LSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNN 297
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
++ + L+NLTTL LS N + + + L + + I
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
Score = 74.5 bits (184), Expect = 7e-17
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++ L L++ ++ V +A L L SLS ++NQI+ + +L++L + N
Sbjct: 154 MTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVN 209
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I ++ +A+++ L +L + +N + L + L L L + N IS + + D
Sbjct: 210 QITDIT--PVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDINA--VKD 263
Query: 130 NVTITTLTLSG 140
+ L +
Sbjct: 264 LTKLKMLNVGS 274
Score = 70.3 bits (173), Expect = 2e-15
Identities = 28/131 (21%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++L+ L + + S + LA L K+ SL+ N + + ++ L++L + +
Sbjct: 109 LTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTES 165
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ V+ +A+L++L +L L++N + ++ + L SL N I+ +TP + +
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VAN 219
Query: 130 NVTITTLTLSG 140
+ +L +
Sbjct: 220 MTRLNSLKIGN 230
Score = 66.4 bits (163), Expect = 4e-14
Identities = 20/128 (15%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72
L+ + + A L + + + + L +++ L +A ++
Sbjct: 2 AATLATLPAPINQIF--PDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57
Query: 73 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT 132
++ G + +L+NL L+L+ N + ++ ++ L L L + N I+ ++ + +
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTN 111
Query: 133 ITTLTLSG 140
+ L L+
Sbjct: 112 LRELYLNE 119
Score = 66.4 bits (163), Expect = 5e-14
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T L S+ L +A + +S++ + L L L+ + NQI + L L++L
Sbjct: 39 TQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLY 94
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
+ N+I +S +L +L+NL L L+ + + ++ + L + L L N
Sbjct: 95 IGTNKITDIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LS 149
Query: 126 VIGDNVTITTLTLSG 140
+ + + LT++
Sbjct: 150 PLSNMTGLNYLTVTE 164
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 78.4 bits (193), Expect = 5e-18
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 13/143 (9%)
Query: 9 RLSSLKVLSIAHNQFSSVRR---------GALAGLDKLTSLSCHHNQIDVL-EDHSFRAL 58
L L+ L+IA N+ S + K+ +N ++ S + +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
L LD HN++ + + LT L L +N + + +D ++ L N
Sbjct: 573 VKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630
Query: 119 ISMVTPDV-IGDNVTITTLTLSG 140
+ + + ++ S
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSY 653
Score = 74.5 bits (183), Expect = 9e-17
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 12/145 (8%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED---------HSFR 56
+ L L + + + + L L +L SL+ N+
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 57 ALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115
+ + +N + + ASL + L LD HN +R L + L +L+LD
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLD 603
Query: 116 DNDISMVTPDVIGDNVTITTLTLSG 140
N I + D + L S
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSH 628
Score = 74.5 bits (183), Expect = 1e-16
Identities = 22/145 (15%), Positives = 58/145 (40%), Gaps = 14/145 (9%)
Query: 10 LSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST-----LSH 63
++ L +HN+ + + + S+ +N+I + ++ S
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-------LKSLQELRLDD 116
+ L++N I A S ++T+ LS+N + ++ ++ + P L + L
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 117 NDISMVTPDVIGDNVT-ITTLTLSG 140
N ++ ++ D + ++ + +S
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSY 762
Score = 71.1 bits (174), Expect = 2e-15
Identities = 19/146 (13%), Positives = 56/146 (38%), Gaps = 15/146 (10%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-------HSFRALSTL 61
+ + +++++N+ A ++++ +N + + + +++ L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730
Query: 62 SHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL------ 114
+ +DL N++ ++S L L+ +D+S+N + + L+ +
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDA 789
Query: 115 DDNDISMVTPDVIGDNVTITTLTLSG 140
+ N I P I ++ L +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGS 815
Score = 68.7 bits (168), Expect = 1e-14
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 9/137 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDH-----SFRALSTLSH 63
L + + N+ +S+ L L+++ +N +A
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
D NRI+ + +L L + N +R + + L L L + DN +
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISID 843
Query: 124 PDVIGDNVTITTLTLSG 140
+ + L
Sbjct: 844 VTSVCPYIEAGMYVLLY 860
Score = 67.2 bits (164), Expect = 3e-14
Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 15/144 (10%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
++RL+ L+++ A++ F+ + + + E+ S+ L L+ ++L
Sbjct: 444 IQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ---------DLITPLKSLQELRLDDN 117
+ + L L L +L+++ N + Q D +Q + N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558
Query: 118 DISMV-TPDVIGDNVTITTLTLSG 140
++ + V + L
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVH 582
Score = 65.7 bits (160), Expect = 1e-13
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 8 RRLSSLKVLSIAHNQFSSV-------RRGALAGLDKLTSLSCHHNQIDVL-EDHSFRALS 59
S + + +++N +S+ + G LT++ N++ L +D L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL------ITPLKSLQELR 113
LS++D+++N + + S L + H + L IT SL +L+
Sbjct: 754 YLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Query: 114 LDDNDISMVTPDV 126
+ NDI V +
Sbjct: 813 IGSNDIRKVDEKL 825
Score = 57.2 bits (138), Expect = 1e-10
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH------NQIDVLEDHSFRALSTLS 62
L L + +++N FSS +L + H N+I +L
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L + N I V L LD++ N ++ + P L + +
Sbjct: 810 QLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Query: 123 T 123
Sbjct: 867 R 867
Score = 54.5 bits (131), Expect = 1e-09
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 9/142 (6%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ + LS+A A+ L +L LS + V T +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 66 LAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT- 123
+RI + L + L DL + + + + P+K + L D I +T
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTN 435
Query: 124 -----PDVIGDNVTITTLTLSG 140
I + + +
Sbjct: 436 RITFISKAIQRLTKLQIIYFAN 457
Score = 49.1 bits (117), Expect = 7e-08
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ +L+ LKVLS + + R L S H + L+ D
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL------ITPLKSLQELRLDDNDI 119
L + I + + + + L + LT + I L LQ + ++
Sbjct: 403 LLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460
Query: 120 SMVTPDVIGDNVTITTLTLSGE 141
+ V ++
Sbjct: 461 TYDNIAVDWEDANSDYAKQYEN 482
Score = 46.0 bits (109), Expect = 9e-07
Identities = 10/98 (10%), Positives = 23/98 (23%)
Query: 39 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 98
+ + + ++ L LA ++ L+ L L +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 99 TQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTL 136
+ + + I M + D L
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400
Score = 44.1 bits (104), Expect = 4e-06
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRR------GALAGLDKLTSLSCHHNQIDVLEDHSFRALS 59
S LK I H + + R + L L N I +++
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK---LTP 827
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 99
L LD+A N +++ S+ L ++ + +
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
Score = 39.9 bits (93), Expect = 1e-04
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 61
+ SL L I N V +L L N ++ S
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEA 853
Query: 62 SHLDLAHNRIVAVSGASLAHLS 83
L +++ + G +
Sbjct: 854 GMYVLLYDKTQDIRGCDALGIE 875
Score = 26.4 bits (58), Expect = 3.7
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 58 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+ LD + R + + + H N + + + + L L
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGF 333
Query: 118 DISMVTPDVIGDNVTITTLTLSG 140
PD IG + L+
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGT 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 76.6 bits (189), Expect = 7e-18
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L L + N+ + +L L KL SLS HN I + L L L L +N
Sbjct: 89 LKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNN 144
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I ++ L+ L+ L TL L N + + + L LQ L L N IS + +
Sbjct: 145 KITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAG 198
Query: 130 NVTITTLTLSG 140
+ L L
Sbjct: 199 LKNLDVLELFS 209
Score = 74.7 bits (184), Expect = 3e-17
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L L+ L + +N+ + + L+ L KL +LS NQI + L+ L +L L+ N
Sbjct: 133 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 188
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
I + LA L NL L+L + + L ++ + D S+VTP++I D
Sbjct: 189 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK--NTDGSLVTPEIISD 244
Query: 130 NVTITTLTLS 139
+ +
Sbjct: 245 DGDYEKPNVK 254
Score = 72.4 bits (178), Expect = 2e-16
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+S+ + ++ SV+ + L +T L + N++ ++ L L L L N
Sbjct: 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ +S L L L +L L HN + + + L L+ L L +N I+ +T +
Sbjct: 101 KVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSR 154
Query: 130 NVTITTLTLSG 140
+ TL+L
Sbjct: 155 LTKLDTLSLED 165
Score = 60.1 bits (146), Expect = 8e-12
Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
+ + + + L+++ + ++ I +V G + +L N+T L L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75
Query: 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ N L + + LK+L L LD+N + ++ + D + +L+L
Sbjct: 76 NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 76.8 bits (189), Expect = 1e-17
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 3/134 (2%)
Query: 10 LSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L + I N + A L L L + I L D LD+
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137
Query: 69 N-RIVAVSGASLAHLS-NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N I + S LS L L+ N ++ + + + D+N++ + DV
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 127 IGDNVTITTLTLSG 140
L +S
Sbjct: 198 FHGASGPVILDISR 211
Score = 75.6 bits (186), Expect = 2e-17
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 2/132 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSH-LDLA 67
L +L+ L I++ + + L + I +E +SF LS S L L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
N I + ++ +N L L D+ L + I + +
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222
Query: 128 GDNVTITTLTLS 139
+ + +
Sbjct: 223 ENLKKLRARSTY 234
Score = 75.2 bits (185), Expect = 3e-17
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAH- 68
+ L + +++GA +G L + N + +V+E F L L + +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N ++ ++ + +L NL L +S+ ++ L L + DN
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
Score = 71.4 bits (175), Expect = 8e-16
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 4/123 (3%)
Query: 8 RRLSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSC-HHNQIDVLEDHSFRALSTLSHLD 65
L+ + I+ N + + L KL + N + + +F+ L L +L
Sbjct: 51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNF-LRALTQDLITPLKS-LQELRLDDNDISMVT 123
+++ I + H LD+ N + + ++ L L L+ N I +
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170
Query: 124 PDV 126
Sbjct: 171 NSA 173
Score = 65.6 bits (160), Expect = 9e-14
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
+L + N + A G +N ++ L + F S LD++ R
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
I ++ L +L L + L+ L + L +L E L
Sbjct: 214 IHSLPSYGLENLKKLRARSTYN--LKKL--PTLEKLVALMEASLTYP 256
Score = 56.8 bits (137), Expect = 1e-10
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++ +N + G L +I L + L L +
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNF 94
+ + +L L L L++
Sbjct: 237 KKL----PTLEKLVALMEASLTYPS 257
Score = 51.4 bits (123), Expect = 8e-09
Identities = 16/105 (15%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 38 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN-FLR 96
C +++ + R L ++ + + + +L +++S N L
Sbjct: 12 RVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 97 ALTQDLITPLKSLQELRLDD-NDISMVTPDVIGDNVTITTLTLSG 140
+ D+ + L L E+R++ N++ + P+ + + L +S
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113
Score = 40.2 bits (94), Expect = 7e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
S +L I+ + S+ L L KL + S ++ + + + L L L
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLT 254
Query: 68 HNR 70
+
Sbjct: 255 YPS 257
Score = 39.0 bits (91), Expect = 2e-04
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 68 HNRIVAVSGASLAHL-----SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI-SM 121
NR+ + + + N L LR + + + L+++ + ND+ +
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 122 VTPDVIGDNVTITTLTLSG 140
+ DV + + + +
Sbjct: 70 IEADVFSNLPKLHEIRIEK 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 74.7 bits (184), Expect = 2e-17
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
R L+ L L++ +NQ ++ G L +L +L +NQ+ L F L+ L L L
Sbjct: 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
N++ ++ L+ L L L+ N L+++ L +LQ L L N + V P
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGA 174
Query: 128 GDNVT-ITTLTLSG 140
D + + T+TL G
Sbjct: 175 FDRLGKLQTITLFG 188
Score = 69.7 bits (171), Expect = 2e-15
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C + L S+ + L + +++ GL KLT L+ +NQ+ L F
Sbjct: 21 CQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
L+ L L LA+N++ ++ HL+ L L L N L++L + L L+ELRL+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 117 NDISMVTPDVIGDNVT-ITTLTLS 139
N + + P D +T + TL+LS
Sbjct: 141 NQLQSI-PAGAFDKLTNLQTLSLS 163
Score = 65.5 bits (160), Expect = 5e-14
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L L +A+NQ +S+ G L +L L NQ+ L F L+ L L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N++ ++ + L+NL TL LS N L+++ L LQ + L N
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 48.2 bits (115), Expect = 1e-07
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
LDL + +S A+ L+ LT L+L +N L+ L+ + L L L L +N ++ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 124 PDVIGDNVTITTLTLSG 140
V + L L G
Sbjct: 100 LGVFDHLTQLDKLYLGG 116
Score = 44.7 bits (106), Expect = 2e-06
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
RL+ LK L + NQ S+ GA L L +LS NQ+ + +F L L + L
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 68 HN 69
N
Sbjct: 188 GN 189
Score = 33.5 bits (77), Expect = 0.013
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L++L+ LS++ NQ SV GA L KL +++ NQ D
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 31.2 bits (71), Expect = 0.068
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 86 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
LDL L L+ L L L LD N + ++ V D + TL L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 75.7 bits (186), Expect = 3e-17
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
+L+I+ N S + + L KL L HN+I L+ F+ L +LDL+HN+
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQD-LITPLKSLQELRLDDNDISMVTPDVI 127
+V + S NL LDLS N AL + L+ L L + + I
Sbjct: 81 LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
Score = 67.6 bits (165), Expect = 2e-14
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L + + + F + + + + ++ +S HLD ++N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQELRLDDNDISMVTPDVI 127
+ + HL+ L TL L N L+ L++ ++ T +KSLQ+L + N +S
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394
Query: 128 GDN-VTITTLTLSG 140
++ +L +S
Sbjct: 395 CSWTKSLLSLNMSS 408
Score = 67.2 bits (164), Expect = 3e-14
Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 24/156 (15%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS--FRALSTLSHLDL 66
++S L ++N + L +L +L NQ+ L + + +L LD+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 67 AHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQDLITP-------------------- 105
+ N + + +L +L++S N L + P
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV 441
Query: 106 -LKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L++LQEL + N + V + ++ + L
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477
Score = 66.8 bits (163), Expect = 5e-14
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
T L+ N I L +LS L L ++HNRI + + L LDLSHN L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT-ITTLTLSG 140
++ P +L+ L L N + N++ + L LS
Sbjct: 83 KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124
Score = 66.4 bits (162), Expect = 6e-14
Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 3/132 (2%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
S++ + + + V + + L +N + + L+ L L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 68 HNRIVAVSGASLA--HLSNLTTLDLSHNFLRA-LTQDLITPLKSLQELRLDDNDISMVTP 124
N++ +S + + +L LD+S N + + + KSL L + N ++
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Query: 125 DVIGDNVTITTL 136
+ + + L
Sbjct: 417 RCLPPRIKVLDL 428
Score = 64.1 bits (156), Expect = 4e-13
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
LS L++L I+HN+ + +L L HN++ + S L HLDL+
Sbjct: 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLS 98
Query: 68 HNRIVAV-SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N A+ ++S L L LS L + I L + L +
Sbjct: 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149
Score = 59.5 bits (144), Expect = 2e-11
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 9 RLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
++ SL+ L I+ N S +G + L SL+ N + + LDL
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N+I ++ + L L L+++ N L+++ + L SLQ++ L N
Sbjct: 430 SNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 52.6 bits (126), Expect = 4e-09
Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 7/137 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALA-----GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
+++ SI++ + L L+ + + + + S ++
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV-- 122
+ + V + +S LD S+N L + L L+ L L N + +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 123 TPDVIGDNVTITTLTLS 139
++ ++ L +S
Sbjct: 366 IAEMTTQMKSLQQLDIS 382
Score = 47.2 bits (112), Expect = 3e-07
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 6/132 (4%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS-FRALSTLSHLDLA 67
L+ L ++HN+ + + L L N D L F +S L L L+
Sbjct: 67 FNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
+ S +AHL+ L + ++ L+ L + I
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181
Query: 128 GDNVTITTLTLS 139
D T L
Sbjct: 182 LDVSVKTVANLE 193
Score = 44.5 bits (105), Expect = 3e-06
Identities = 14/104 (13%), Positives = 34/104 (32%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
++++ D+S +L LS + + SN+ + + + R
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ + + L +N ++ + G + TL L
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Score = 39.1 bits (91), Expect = 2e-04
Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 4/114 (3%)
Query: 8 RRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS-HLD 65
+LK L ++ N F ++ + +L L ++ L+ L
Sbjct: 87 HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Query: 66 LAHNRIVAVSGASLAHL--SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
L L +L + ++ + + + +L+ +
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Score = 33.7 bits (77), Expect = 0.012
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L +L+ L++A NQ SV G L L + H N D
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Score = 32.9 bits (75), Expect = 0.023
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 2/110 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+S LK L ++ +A L+ L E L + L
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHI 170
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+ +S T +L + ++ + +D +L N
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220
Score = 27.1 bits (60), Expect = 2.2
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ +D S N L + +DL + L + N IS + I + L +S
Sbjct: 1 SEFLVDRSKNGLIHVPKDL---SQKTTILNISQNYISELWTSDILSLSKLRILIISH 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 74.7 bits (184), Expect = 4e-17
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+ + L ++ N +V A+AGL + +L QI + LS L L L N
Sbjct: 84 LTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN 139
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I +S LA L+NL L + + + L + L L L+ DDN IS ++P +
Sbjct: 140 QITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP--LAS 193
Query: 130 NVTITTLTLSG 140
+ + L
Sbjct: 194 LPNLIEVHLKN 204
Score = 70.5 bits (173), Expect = 1e-15
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++L+ LSI + Q S + LA L KLT+L N+I + +L L + L +N
Sbjct: 150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNN 205
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I VS LA+ SNL + L++ + L ++ + + P I D
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK--GPSGAPIAPATISD 261
Query: 130 NVTITTLTLS 139
N T + L+
Sbjct: 262 NGTYASPNLT 271
Score = 67.4 bits (165), Expect = 2e-14
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++ ++ + + A LD +T+LS + +E + L+ L L+L N
Sbjct: 18 LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDN 73
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I ++ L +L+ +T L+LS N L+ ++ I L+S++ L L I+ VTP +
Sbjct: 74 QITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAG 127
Query: 130 NVTITTLTLSG 140
+ L L
Sbjct: 128 LSNLQVLYLDL 138
Score = 33.1 bits (76), Expect = 0.018
Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 4/62 (6%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138
L+N + + + L + L ++ + + + L L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70
Query: 139 SG 140
Sbjct: 71 KD 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 72.7 bits (179), Expect = 4e-17
Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++K L+I + ++ ++GL L L + + + L++L+ LD++H+
Sbjct: 65 AHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL--ITPLKSLQELRLDDNDISMVTPDVI 127
+ L + ++DLS+N D+ + L L+ L + + + I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYN---GAITDIMPLKTLPELKSLNIQFDGVHDYRG--I 177
Query: 128 GDNVTITTLTLSG 140
D + L
Sbjct: 178 EDFPKLNQLYAFS 190
Score = 71.1 bits (175), Expect = 2e-16
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS+L+ L I +S + L+GL LT L H+ D L ++ +DL++N
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
Query: 70 -RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
I + L L L +L++ + + I L +L I
Sbjct: 147 GAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194
Score = 67.7 bits (166), Expect = 3e-15
Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++SL +++A+ + + + + L+ ++ LS L L +
Sbjct: 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGK 98
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND-ISMVTPDVIG 128
+ + +L+ L++LT LD+SH+ I L + + L N I+ + P +
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LK 156
Query: 129 DNVTITTLTLSG 140
+ +L +
Sbjct: 157 TLPELKSLNIQF 168
Score = 53.8 bits (130), Expect = 7e-10
Identities = 15/109 (13%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 32 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91
+ + + + + +++L+++ LA+ + ++G + + N+ L ++
Sbjct: 20 STFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74
Query: 92 HNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ I+ L +L+ LR+ D++ + ++T L +S
Sbjct: 75 NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 72.1 bits (178), Expect = 5e-17
Identities = 17/132 (12%), Positives = 47/132 (35%), Gaps = 5/132 (3%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L + + + ++ A+ L + + L + ++ L+ + L S L +
Sbjct: 25 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY 82
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ + A++ L + L + L L + L +L+ +++ + +G
Sbjct: 83 QELTRLK-AAVGELPEKSKLQEIYQELTELKAA-VGELPEKSKLQEIYQELTQL-KAAVG 139
Query: 129 DNVTITTLTLSG 140
+ +
Sbjct: 140 ELPDQSKQQQIY 151
Score = 67.9 bits (167), Expect = 2e-15
Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 5/132 (3%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L + + + ++ A+ L + + L + ++ L+ + L S L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY 59
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ + A++ L + L + L L + L +L+ +++ + +G
Sbjct: 60 QELTRLK-AAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTEL-KAAVG 116
Query: 129 DNVTITTLTLSG 140
+ + L
Sbjct: 117 ELPEKSKLQEIY 128
Score = 67.5 bits (166), Expect = 3e-15
Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L L + + + ++ + L + + L + ++ L+ + L S L +
Sbjct: 48 ELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY 105
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
+ + A++ L + L + L L + L + + +++ +
Sbjct: 106 QELTELK-AAVGELPEKSKLQEIYQELTQLKAA-VGELPDQSKQQQIYQELTDL-KTAFE 162
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 74.9 bits (184), Expect = 7e-17
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
K LS++ N S +R ++ L +L L HN+I L+ H F L +LD++HNR
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMVTPDVI 127
+ + S +++L LDLS N L L L L L + +
Sbjct: 112 LQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Score = 63.4 bits (154), Expect = 7e-13
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 5/130 (3%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
LS L+VL ++HN+ S+ L L HN++ + S +++L HLDL+
Sbjct: 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLS 129
Query: 68 HNRIVAV-SGASLAHLSNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDISMVTPD 125
N + +L+ LT L LS R L + L S L L I +
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189
Query: 126 VIGDNVTITT 135
+ T
Sbjct: 190 SLQIPNTTVL 199
Score = 61.4 bits (149), Expect = 3e-12
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL----STLSHL 64
L L+ L + N + + AL ++SL ++ L H++ ++ L
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
+L+ N + L + LDL +N + ++ +D +T L++LQEL + N + V
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPD 490
Query: 125 DVIGDNVTITTLTLSG 140
V ++ + L
Sbjct: 491 GVFDRLTSLQYIWLHD 506
Score = 60.7 bits (147), Expect = 6e-12
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 5/135 (3%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L SL + + + F + + ++ + + + S+ + L+ N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ L L TL L N L+ + K++ L D ++ +
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 130 NV----TITTLTLSG 140
+I L LS
Sbjct: 423 TCAWAESILVLNLSS 437
Score = 59.1 bits (143), Expect = 2e-11
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGL----DKLTSLSCHHNQIDVLEDHSFRA 57
+ + ++ L +S+ A + + L+ N L FR
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRC 447
Query: 58 L-STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
L + LDL +NRI+++ + HL L L+++ N L+++ + L SLQ + L D
Sbjct: 448 LPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Query: 117 N 117
N
Sbjct: 507 N 507
Score = 58.7 bits (142), Expect = 3e-11
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 3/129 (2%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ + + ++ + + T L+ N L L L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 68 HNRIVAVSGAS--LAHLSNLTTLDLSHNFLRALTQDLITPL-KSLQELRLDDNDISMVTP 124
N + + ++S+L TLD+S N L + D +S+ L L N ++
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 125 DVIGDNVTI 133
+ V +
Sbjct: 446 RCLPPKVKV 454
Score = 39.5 bits (92), Expect = 1e-04
Identities = 14/104 (13%), Positives = 29/104 (27%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
+ +L+ +S AL +L + + + A + + + LS +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ S L N + + TL L
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386
Score = 36.8 bits (85), Expect = 0.001
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
L LS N + L I+ L L+ LRL N I + V N + L +S
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Score = 35.6 bits (82), Expect = 0.003
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
V L +L+ L++A NQ SV G L L + H N D
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 72.0 bits (177), Expect = 9e-17
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
+ L + K L+++ N + +L+G++ L LS N I +E+ TL L +
Sbjct: 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWI 100
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDN 117
++N+I ++SG + L NL L +S+N + + D + L L++L L N
Sbjct: 101 SYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 58.9 bits (143), Expect = 7e-12
Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 10 LSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+ + + + H + + L+ L L+ N I+ + + L L L
Sbjct: 22 ATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG 78
Query: 68 HNRIVAVSGASLAHLSN-LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP-D 125
N I + L +++ L L +S+N + +L I L +L+ L + +N I+ D
Sbjct: 79 RNLIKKIEN--LDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEID 134
Query: 126 VIGDNVTITTLTLSG 140
+ + L L+G
Sbjct: 135 KLAALDKLEDLLLAG 149
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 72.7 bits (179), Expect = 1e-16
Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFRALSTLSHLDLAH 68
S + L + ++ A + L ++ + + + LE HSF LS ++H+++ +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 69 NR-IVAVSGASLAHLSNLTTLDLSHNFLRALTQD-LITPLKSLQELRLDDN 117
R + + +L L L L + + L+ + L + DN
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140
Score = 63.9 bits (156), Expect = 2e-13
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%)
Query: 10 LSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF-RALSTLSHLDLA 67
LS + + I + + + + AL L L L + + + D + + L++
Sbjct: 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138
Query: 68 HN-RIVAVSGASLAHLSNLT-TLDLSHNFLRALTQDLITPLKSLQELRLDDN-DISMVTP 124
N + ++ + L N T TL L +N ++ K L + L+ N ++++
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDK 197
Query: 125 DVIGDNVT-ITTLTLSG 140
D G + + L +S
Sbjct: 198 DAFGGVYSGPSLLDVSQ 214
Score = 58.9 bits (143), Expect = 2e-11
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 8 RRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLS-HL 64
+ L LK L I + + D L + + + ++F+ L + L
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHN-FLRALTQDLITPLKS-LQELRLDDNDISMV 122
L +N +V G + + + L + L+ N +L + +D + S L + ++ +
Sbjct: 162 KLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220
Query: 123 TPDV 126
Sbjct: 221 PSKG 224
Score = 55.0 bits (133), Expect = 3e-10
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 7 VRRLSSLKVLSIAHN-QFSSVRRGALAGLDKLT-SLSCHHNQIDVLEDHSFRALSTLSHL 64
V +L I N +S+ A GL T +L ++N ++ ++F + L +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAV 184
Query: 65 DLAHNR-IVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQEL 112
L N+ + + + + S + LD+S + AL + LK L
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 53.9 bits (130), Expect = 8e-10
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL-STLSHLDLAHN 69
+ L + +N F+SV+ A G + + V++ +F + S S LD++
Sbjct: 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
Query: 70 RIVAVSGASLAHLSNLTTLDLSH 92
+ A+ L HL L +
Sbjct: 216 SVTALPSKGLEHLKELIARNTWT 238
Score = 50.0 bits (120), Expect = 2e-08
Identities = 12/106 (11%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF-L 95
I + + L L + + + ++L N++ + +S + L
Sbjct: 13 EEDFRVTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 96 RALTQDLITPLKSLQELRLDDN-DISMVTPDVIGDNVTITTLTLSG 140
+ L L + + + + +++ + PD + + + L +
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 74.0 bits (181), Expect = 1e-16
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 30 ALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88
L G + LT L + Q + LE R L L +L + + + V+ + L+ L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 89 DLSHNFLRALTQDLITPLKSLQELRLDDN 117
+LS N L +L+ + L SLQEL L N
Sbjct: 86 NLSFNALESLSWKTVQGL-SLQELVLSGN 113
Score = 70.2 bits (171), Expect = 2e-15
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 6 TVRRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
+ +L L I + Q + L GL +L +L+ + + + +F LS L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
+L+ N + ++S ++ LS L L LS N L
Sbjct: 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 64.8 bits (157), Expect = 2e-13
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 38 TSLSCHH-NQIDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHLSNLTTLDLSHNFL 95
+ L C +D L H L+ L + + + + + L L L L + + L
Sbjct: 11 SGLRCTRDGALDSL--HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 96 RALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
R + D L L L N + ++ + +++ L LSG
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSG 112
Score = 55.1 bits (132), Expect = 5e-10
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 4 WCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 63
+R L L+ L+I + V A +L+ L+ N ++ L + + LS L
Sbjct: 49 LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE 107
Query: 64 LDLAHNRIV 72
L L+ N +
Sbjct: 108 LVLSGNPLH 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 74.2 bits (183), Expect = 1e-16
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++L+ L I+ N+ S + LA L L SL +NQI + L+ L L L N
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGN 231
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ + +LA L+NLT LDL++N + L ++ L L EL+L N IS ++P +
Sbjct: 232 QLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285
Query: 130 NVTITTLTLSG 140
+T L L+
Sbjct: 286 LTALTNLELNE 296
Score = 73.8 bits (182), Expect = 1e-16
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
T+ L++L L +A+NQ S++ L+GL KLT L NQI + L+ L++L+
Sbjct: 238 TLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGLTALTNLE 293
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
L N++ +S +++L NLT L L N + ++ ++ L LQ L +N +S V+
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS- 348
Query: 126 VIGDNVTITTLTLSG 140
+ + I L+
Sbjct: 349 -LANLTNINWLSAGH 362
Score = 71.1 bits (175), Expect = 1e-15
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L +L L++ N S + ++ L KL L ++N++ + S L+ ++ L HN
Sbjct: 308 LKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 363
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I ++ LA+L+ +T L L+ + + ++ + + P I D
Sbjct: 364 QISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISD 419
Query: 130 NVTITTLTLSG 140
+ T ++
Sbjct: 420 GGSYTEPDITW 430
Score = 71.1 bits (175), Expect = 2e-15
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ L + L S+ + L+ LT ++ +NQ+ + + L+ L +
Sbjct: 41 SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDIL 96
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
+ +N+I ++ LA+L+NLT L L +N + + D + L +L L L N IS ++
Sbjct: 97 MNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA- 151
Query: 126 VIGDNVTITTLTLS 139
+ ++ L+
Sbjct: 152 -LSGLTSLQQLSFG 164
Score = 67.3 bits (165), Expect = 3e-14
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++L L++ +NQ + + L L L L N I + + L++L L N
Sbjct: 111 LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-GN 165
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ + LA+L+ L LD+S N + + ++ L +L+ L +N IS +TP +G
Sbjct: 166 QVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGI 219
Query: 130 NVTITTLTLSG 140
+ L+L+G
Sbjct: 220 LTNLDELSLNG 230
Score = 60.0 bits (146), Expect = 1e-11
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 11/130 (8%)
Query: 12 SLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
L +I + + L + + S L ++ L
Sbjct: 2 PLGSATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLG 57
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDN 130
I ++ G + +L+NLT ++ S+N L +T + L L ++ +++N I+ +TP + +
Sbjct: 58 IKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111
Query: 131 VTITTLTLSG 140
+T LTL
Sbjct: 112 TNLTGLTLFN 121
Score = 43.8 bits (104), Expect = 4e-06
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+++ LS HNQ S + LA L ++T L + + +S + +
Sbjct: 352 LTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 100
++ + A+++ + T D++ N +
Sbjct: 410 ALI--APATISDGGSYTEPDITWNLPSYTNE 438
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 73.9 bits (182), Expect = 1e-16
Identities = 26/146 (17%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL-EDHSFRALSTLSHLDLAH 68
L L++A+NQ + + +++ +LS HN++ + +++S +S +D ++
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411
Query: 69 NRIVAVSG-------ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
N I +V G + N+++++LS+N + ++L + L + L N ++
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471
Query: 122 V-------TPDVIGDNVTITTLTLSG 140
+ + + +T++ L
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRF 497
Score = 73.2 bits (180), Expect = 2e-16
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLD-------KLTSLSCHHNQIDVLEDHSFRALS 59
+ +S + + ++N+ SV LD ++S++ +NQI F S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 60 TLSHLDLAHNRIVAVSG-------ASLAHLSNLTTLDLSHNFLRALTQDL-ITPLKSLQE 111
LS ++L N + + + + LT++DL N L L+ D T L L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 112 LRLDDNDISMVTPDVIGDNVTITTLTLS 139
+ L N S P ++ T+ +
Sbjct: 518 IDLSYNSFSKF-PTQPLNSSTLKGFGIR 544
Score = 73.2 bits (180), Expect = 3e-16
Identities = 17/142 (11%), Positives = 53/142 (37%), Gaps = 11/142 (7%)
Query: 9 RLSSLKVLSIAHNQFSSVRR--------GALAGLDKLTSLSCHHNQIDVLE-DHSFRALS 59
L ++++++A N+ S + +K+ + +N + + S + +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
L L+ +N++ + L +L+L++N + + + + ++ L N +
Sbjct: 331 KLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Query: 120 SMVTPDV-IGDNVTITTLTLSG 140
+ ++ + S
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSY 411
Score = 65.4 bits (160), Expect = 1e-13
Identities = 18/137 (13%), Positives = 42/137 (30%), Gaps = 9/137 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQI-----DVLEDHSFRALSTLSH 63
L + + N+ + + L L + +N L + + +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVT 123
D NR + + +LT L + N +R + + + ++ L + DN +
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISID 603
Query: 124 PDVIGDNVTITTLTLSG 140
+ + L
Sbjct: 604 LSYVCPYIEAGMYMLFY 620
Score = 63.9 bits (156), Expect = 4e-13
Identities = 23/146 (15%), Positives = 56/146 (38%), Gaps = 15/146 (10%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH-------SFRALSTL 61
+ ++ +++++NQ S + + L+S++ N + + + +F+ L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Query: 62 SHLDLAHNRIVAV-SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL------ 114
+ +DL N++ + L L +DLS+N + +L+ +
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDA 549
Query: 115 DDNDISMVTPDVIGDNVTITTLTLSG 140
N P+ I ++T L +
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGS 575
Score = 57.4 bits (139), Expect = 8e-11
Identities = 16/144 (11%), Positives = 45/144 (31%), Gaps = 14/144 (9%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
V RL+ L+ + ++ F + + + ED + L L+ ++
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVE 255
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL--------ITPLKSLQELRLDDN 117
+ + + L L + ++++ N + Q + +Q + + N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 118 DISMVT-PDVIGDNVTITTLTLSG 140
++ + + L
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLY 339
Score = 54.3 bits (131), Expect = 9e-10
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED------HSFRALSTLSH 63
L L + +++N FS L + + +L+
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L + N I V+ N++ LD+ N ++ + P L + +
Sbjct: 571 LQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626
Score = 48.5 bits (116), Expect = 1e-07
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 6/131 (4%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S L I + + + K T + N I + + L+ L + ++
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNS 216
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
VA + N LK L ++ + + P +
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDN-----LKDLTDVEVYNCPNLTKLPTFLKA 271
Query: 130 NVTITTLTLSG 140
+ + ++
Sbjct: 272 LPEMQLINVAC 282
Score = 43.9 bits (104), Expect = 4e-06
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 7/141 (4%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF----RALSTL 61
++ + LS+ S A+ L +L L+ + V E A +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 62 SHLDLAHNRIV--AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
V S+L ++ + + + ++ N+I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 120 SMVTPDVIGDNVTITTLTLSG 140
+ V + + +
Sbjct: 196 TFV-SKAVMRLTKLRQFYMGN 215
Score = 34.6 bits (80), Expect = 0.007
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 3/75 (4%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
SL L I N V ++ L N ++ L +
Sbjct: 564 LCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620
Query: 69 NRIVAVSGASLAHLS 83
++ + G +
Sbjct: 621 DKTQDIRGCDALDIK 635
Score = 33.5 bits (77), Expect = 0.017
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 76 GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
G SL +T L L D I L L+ L L +
Sbjct: 74 GVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 72.4 bits (178), Expect = 2e-16
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++LK L ++HNQ S + L L KL LS + N++ L + LS L L +N
Sbjct: 62 FTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNN 116
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ L HL NL L + +N L+++ + L L+ L L N+I+ +
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTR 170
Query: 130 NVTITTLTLSG 140
+ + L+G
Sbjct: 171 LKKVNWIDLTG 181
Score = 69.7 bits (171), Expect = 2e-15
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ L L + +N+ +L L L LS +N++ + LS L LDL N
Sbjct: 105 SACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
I G L L + +DL+ L ++ D D ++P I +
Sbjct: 161 EITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK--DPDGRWISPYYISN 216
Query: 130 NVTITTLTLS 139
+ +
Sbjct: 217 GGSYVDGCVL 226
Score = 66.2 bits (162), Expect = 3e-14
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++ ++ + + + L + + + ++ I L + + L L L+HN
Sbjct: 18 LANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN 73
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+I +S L L+ L L ++ N L+ L P L L LD+N++ +
Sbjct: 74 QISDLSP--LKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDS--LIH 126
Query: 130 NVTITTLTLSG 140
+ L++
Sbjct: 127 LKNLEILSIRN 137
Score = 60.4 bits (147), Expect = 4e-12
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
GL + + L S + LS + + + ++ I +++G + +NL L L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70
Query: 91 SHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
SHN + L+ + L L+EL ++ N + + + ++ L L
Sbjct: 71 SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDN 115
Score = 49.6 bits (119), Expect = 3e-08
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 43 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
I+ + L+ +L + + LS + + ++ +++L
Sbjct: 5 RPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG-- 58
Query: 103 ITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ +L+EL L N IS ++P + D + L+++
Sbjct: 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 69.3 bits (170), Expect = 2e-15
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L++L L + NQ S+ G L L L NQ+ L D F L+ L++L+LAH
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
N++ ++ L+NLT LDLS+N L++L + + L L++LRL N + V PD +
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVF 201
Query: 129 DNVT-ITTLTLSG 140
D +T + + L
Sbjct: 202 DRLTSLQYIWLHD 214
Score = 62.7 bits (153), Expect = 7e-13
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L +++ L++ N+ + AL L LT L NQ+ L + F L+ L L L
Sbjct: 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
N++ ++ L+NLT L+L+HN L++L + + L +L EL L N
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 55.4 bits (134), Expect = 3e-10
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
+L++LK L + NQ S+ G L LT L+ HNQ+ L F L+ L+ LDL+
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+N++ ++ L+ L L L N L+++ + L SLQ + L DN
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 29.6 bits (67), Expect = 0.31
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L+ LK L + NQ SV G L L + H N D
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/57 (12%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+L + + L+++ + +++ ++++ I L +++ L L N +
Sbjct: 24 ANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH 76
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 67.4 bits (165), Expect = 3e-15
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ L + + + A LD+ ++ N+I L+ F L L L + +N
Sbjct: 18 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN 74
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDIS 120
RI + L +LT L L++N L L D + LKSL L + N ++
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Score = 49.7 bits (119), Expect = 2e-08
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLA 67
L LK L + +N+ + G L LT L +N + L D +L +L++L +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 68 HNRIVAVSG---ASLAHLSNLTTLD 89
N + + + + LD
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 47.3 bits (113), Expect = 1e-07
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+ LDL +I + A L +D S N +R L L+ L+ L
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 70
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLSG 140
+++N I + + +T L L+
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTN 97
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 66.6 bits (163), Expect = 4e-15
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 8 RRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R S +K L + +++ + + G ++L LS + + + + L+ L L+L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLEL 71
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDIS 120
+ NR+ NLT L+LS N ++ L+ + + L++L+ L L + +++
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Score = 42.0 bits (99), Expect = 8e-06
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 51 EDHSFRALSTLSHLDLAHNRIVAVSGASL-AHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
+ R S + L L ++R L L L + L ++ + L L
Sbjct: 9 LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKL 66
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
++L L DN +S + +T L LSG
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97
Score = 26.6 bits (59), Expect = 2.7
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 10 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
+L L+++ N+ + L L+ L SL + ++ L D+ L L
Sbjct: 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 66.6 bits (163), Expect = 1e-14
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C+ + L L L + NQF+ V L+ LT + +N+I L + SF
Sbjct: 17 CSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFS 75
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
++ L L L++NR+ + + L +L L L N + + + L +L L +
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Query: 117 N 117
N
Sbjct: 136 N 136
Score = 63.5 bits (155), Expect = 1e-13
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 38 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 97
T L NQ L L+ +DL++NRI +S S ++++ L TL LS+N LR
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 98 LTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT-ITTLTLSG 140
+ LKSL+ L L NDIS+V P+ ++++ ++ L +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGA 135
Score = 33.0 bits (76), Expect = 0.017
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
L SL++LS+ N S V GA L L+ L+ N +
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 28.4 bits (64), Expect = 0.64
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
++T L L N + ++L + K L + L +N IS ++ + + TL LS
Sbjct: 31 RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 65.5 bits (160), Expect = 2e-14
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 8 RRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
R ++++ L + + + + + G A L LS + + + + L L L+L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDIS 120
+ NRI L NLT L+LS N L+ ++ + + L+ L+ L L + +++
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Score = 43.6 bits (103), Expect = 3e-06
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 51 EDHSFRALSTLS--HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 108
+ R + + LD + + G A NL L L + L +++ + L
Sbjct: 16 LELRNRTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISVSN--LPKLPK 72
Query: 109 LQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L++L L +N I + +T L LSG
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Score = 28.2 bits (63), Expect = 0.65
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLED---HSFRALSTLSHLD 65
L +L L+++ N+ + L L+ L SL + ++ L D F+ L L++LD
Sbjct: 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 67.9 bits (165), Expect = 2e-14
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
+ + ++VL +AH + + L L +T L HN++ L + AL
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALP-PALAALRC 487
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL-ITPLKSLQELRLDDNDI 119
L L + N + V G +A+L L L L +N L+ + L L L N +
Sbjct: 488 LEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 120 S 120
Sbjct: 546 C 546
Score = 52.8 bits (126), Expect = 3e-09
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS--HLDLAHNRIVAVSGASLAHLSNLTTL 88
L +D + + + L ++S + L LAH + + L L +T L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHL 468
Query: 89 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
DLSHN LRAL L L+ L+ L+ DN + V + + + L L
Sbjct: 469 DLSHNRLRALPPALAA-LRCLEVLQASDNALENVDG--VANLPRLQELLLCN 517
Score = 34.0 bits (77), Expect = 0.011
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
L L+ L + +N+ L +L L+ N + E R L +
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 65.9 bits (161), Expect = 2e-14
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C + +S+ L + N S+ G L LT L N++ L + F
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
L++L++L+L+ N++ ++ L+ L L L+ N L++L + L L++LRL
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 117 NDISMVTPDVIGDNVT-ITTLTLSG 140
N + V PD + D +T + + L
Sbjct: 134 NQLKSV-PDGVFDRLTSLQYIWLHD 157
Score = 45.4 bits (108), Expect = 8e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+L+SL L+++ NQ S+ G L +L L+ + NQ+ L D F L+ L L L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N++ +V L++L + L N
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 31.2 bits (71), Expect = 0.073
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L+ LK L + NQ SV G L L + H N D
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 62.3 bits (152), Expect = 3e-13
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSF 55
CT R L + L + N+ + G L L L NQ+ +E ++F
Sbjct: 15 CTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 56 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115
S + L L N+I +S L L TL+L N + + L SL L L
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 116 DN 117
N
Sbjct: 135 SN 136
Score = 58.1 bits (141), Expect = 2e-11
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 38 TSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
T L + N++ + F L L L+L N++ + + S++ L L N ++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT-ITTLTLSG 140
++ + L L+ L L DN IS V +++ +T+L L+
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLAS 135
Score = 32.3 bits (74), Expect = 0.027
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
L LK L++ NQ S V G+ L+ LTSL+ N +
Sbjct: 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 62.0 bits (151), Expect = 9e-13
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C +R +S+ ++L + NQ + + G L L L NQ+ L F
Sbjct: 26 CRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
+L+ L+ LDL N++ + A L +L L + N L L + I L L L LD
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQ 144
Query: 117 NDISMVTPDVIGDNVT-ITTLTLSG 140
N + + P D ++ +T L G
Sbjct: 145 NQLKSI-PHGAFDRLSSLTHAYLFG 168
Score = 42.8 bits (101), Expect = 8e-06
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L+ L VL + NQ + + L L L N++ L L+ L+HL L
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQ 144
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHN 93
N++ ++ + LS+LT L N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 30.4 bits (69), Expect = 0.13
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+ RL+ L L++ NQ S+ GA L LT N D
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 61.9 bits (151), Expect = 2e-12
Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
++ S LK++ + +N + L ++ +NQ++ L + L L+ +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYA 202
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
+N + + +L ++ +N L L + + L L + D+N + + PD+
Sbjct: 203 DNNSLKKLPD----LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL-PDL 255
Query: 127 IG 128
Sbjct: 256 PP 257
Score = 59.6 bits (145), Expect = 1e-11
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
SL+ ++ +NQ + L L LT++ +N + L D +L + +N
Sbjct: 172 PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNN 225
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
+ + L +L LTT+ +N L+ L SL+ L + DN ++ + P++
Sbjct: 226 ILEELP--ELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDL-PELPQ- 277
Query: 130 NVTITTLTLS 139
++T L +S
Sbjct: 278 --SLTFLDVS 285
Score = 57.3 bits (139), Expect = 8e-11
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L SL V + S + L L +NQ++ L + + S L +D+ +
Sbjct: 112 SLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDN 162
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
N + + +L + +N L L + + L L + D+N +
Sbjct: 163 NSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK 208
Score = 52.7 bits (127), Expect = 3e-09
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+ L + N + + L L + + + L L +L +++N
Sbjct: 90 PPHLESLVASCNSLTELPEL-PQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNN 141
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
++ + L + S L +D+ +N L+ L SL+ + +N +
Sbjct: 142 QLEKLP--ELQNSSFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNNQLE 186
Score = 52.7 bits (127), Expect = 4e-09
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 16/111 (14%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
SL+ L++ N + + LT L N L + L +L+ + N
Sbjct: 256 PPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSN 307
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
I ++ +L L++S+N L L L+ L N ++
Sbjct: 308 EIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLA 350
Score = 51.1 bits (123), Expect = 1e-08
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
SL L ++ N FS + L L+ N+I L D +L L++++N
Sbjct: 276 PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCDL----PPSLEELNVSNN 327
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+++ + A L L S N L ++ ++L++L ++ N +
Sbjct: 328 KLIELP----ALPPRLERLIASFNHL----AEVPELPQNLKQLHVEYNPLR 370
Score = 46.1 bits (110), Expect = 7e-07
Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 23/126 (18%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED---------------HS 54
L+ L + N + V L L +N + D
Sbjct: 336 PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391
Query: 55 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
L L + N + ++ L ++ + + L++
Sbjct: 392 PELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Query: 115 DDNDIS 120
+ +
Sbjct: 448 EHHHHH 453
Score = 37.3 bits (87), Expect = 7e-04
Identities = 11/121 (9%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 32 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-------- 83
L H + + + + + + A + +
Sbjct: 8 VSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 84 -----NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138
L+L++ L +L + L+ L N ++ + P++ ++
Sbjct: 67 DCLDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELPQSLKSLLVDNN 121
Query: 139 S 139
+
Sbjct: 122 N 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 62.0 bits (151), Expect = 2e-12
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
V L+ L L+ N+ + + ++ LT L+C N + ++ + L+ LD
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDC 155
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N+ + + + LTTLD S N + L ++ K L L D N+I+ +
Sbjct: 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--- 207
Query: 127 IGDNVTITTLTLSG 140
+ N+ +T L S
Sbjct: 208 LNQNIQLTFLDCSS 221
Score = 61.2 bits (149), Expect = 4e-12
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 14/135 (10%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
+ +L++L L ++ + + + L LT L C N I L+ + L++L
Sbjct: 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLA 91
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
N++ + + L+ LT L+ N L L ++ L L N ++ +
Sbjct: 92 CDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID-- 143
Query: 126 VIGDNVTITTLTLSG 140
+ N +T L
Sbjct: 144 -VSHNTQLTELDCHL 157
Score = 57.0 bits (138), Expect = 1e-10
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 72
A + + + L LTSL CH++ I + L+ L+ L N I
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77
Query: 73 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVT 132
+ L+ +NLT L N L L +TPL L L D N ++ + + N
Sbjct: 78 TL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPL 128
Query: 133 ITTLTLSG 140
+T L +
Sbjct: 129 LTYLNCAR 136
Score = 55.8 bits (135), Expect = 3e-10
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L L + N+ + + + L +LT C N + L+ + S L+ L
Sbjct: 211 NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQT 264
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ + L H + L R + + +T L L I+ + +
Sbjct: 265 DLLEI---DLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQ 316
Query: 130 NVTITTLTLSG 140
N + L L+
Sbjct: 317 NPKLVYLYLNN 327
Score = 54.3 bits (131), Expect = 1e-09
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 13/131 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
LS L L + L +L + +++ + L LD
Sbjct: 253 LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAA 307
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
I + L+ L L L++ L L ++ L+ L + I + +G
Sbjct: 308 GITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS--VGK 359
Query: 130 NVTITTLTLSG 140
+ +
Sbjct: 360 IPALNNNFEAE 370
Score = 52.4 bits (126), Expect = 4e-09
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 13/140 (9%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 65
V + L +L + + L+ KL L ++ ++ L + L L
Sbjct: 292 DVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLS 345
Query: 66 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL-----TQDLITPLKSLQELRLDDNDIS 120
+ I S S+ + L + + T + +T S L N ++
Sbjct: 346 CVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403
Query: 121 MVTPDVIGDNVTITTLTLSG 140
+ D + T+T
Sbjct: 404 IEPGDGGVYDQATNTITWEN 423
Score = 51.2 bits (123), Expect = 1e-08
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 94
D S ++ + S L+TL+ LD ++ I ++G + L+ LT L + N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 95 LRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L ++ +L L D N ++ + + +T L
Sbjct: 76 ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDT 115
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 59.9 bits (146), Expect = 1e-11
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGAL--AGLDKLTSLSCHHNQID-VLEDHSFRALSTLSHLD 65
+ LK+L+I+ NQF G + L L LS N+ + D A TL+ LD
Sbjct: 245 TCTELKLLNISSNQFV----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 66 LAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISM 121
L+ N G S L +L LS N L D + ++ L+ L L N+ S
Sbjct: 301 LSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 122 VTPDVIGD-NVTITTLTLSG 140
P+ + + + ++ TL LS
Sbjct: 358 ELPESLTNLSASLLTLDLSS 377
Score = 57.2 bits (139), Expect = 1e-10
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
+ C +++S+ + S N S +L L L SL ++ I+ F+ ++L+
Sbjct: 45 VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLT 103
Query: 63 HLDLAHNRIVAV--SGASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDI 119
LDL+ N + + SL S L L++S N L L SL+ L L N I
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 120 SMVTPDVIGDNVTITTLT 137
S + L
Sbjct: 164 SGANVVGWVLSDGCGELK 181
Score = 54.1 bits (131), Expect = 1e-09
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 9 RLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFRALSTLSHLD 65
++ LKVL ++ N+FS + L +L N +L + +TL L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 66 LAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISM 121
L +N +G +L++ S L +L LS N+L + L + L L++L+L N +
Sbjct: 401 LQNNGF---TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEG 456
Query: 122 VTPDVIGDNVTITTLTLSG 140
P + T+ TL L
Sbjct: 457 EIPQELMYVKTLETLILDF 475
Score = 53.4 bits (129), Expect = 2e-09
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query: 9 RLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQIDVLEDH-SFRALSTLSHL 64
+L+SL+VL ++ N S V G +L L+ N+ + L L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK---ISGDVDVSRCVNLEFL 205
Query: 65 DLAHNRIVAVSGA--SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
D++ N S L S L LD+S N L I+ L+ L + N
Sbjct: 206 DVSSNNF---STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Score = 50.7 bits (122), Expect = 2e-08
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
++L+ L + +N F+ L+ +L SL N + S +LS L L L N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 70 RIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISMVTPD 125
+ G L ++ L TL L N L + L +L + L +N ++ P
Sbjct: 453 ML---EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPK 508
Query: 126 VIGDNVTITTLTLSG 140
IG + L LS
Sbjct: 509 WIGRLENLAILKLSN 523
Score = 49.9 bits (120), Expect = 4e-08
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 8/134 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
SL L + N F+ G + A + K + N I + A
Sbjct: 537 CRSLIWLDLNTNLFN----GTIPAAMFKQSGKI-AANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 69 NRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
N + L LS +++ T S+ L + N +S P
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 127 IGDNVTITTLTLSG 140
IG + L L
Sbjct: 652 IGSMPYLFILNLGH 665
Score = 45.7 bits (109), Expect = 1e-06
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 10 LSSLKVLSIAHNQFSSVRRGA----LAGLDKLTSLSCHHNQIDVLED---HSFRALSTLS 62
+ +L+ L + N + G L+ L +S +N+ L L L+
Sbjct: 465 VKTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNR---LTGEIPKWIGRLENLA 517
Query: 63 HLDLAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
L L++N SG A L +L LDL+ N I Q ++ N I
Sbjct: 518 ILKLSNNSF---SGNIPAELGDCRSLIWLDLNTNLF----NGTIPAAMFKQSGKIAANFI 570
Query: 120 SMVTPDVIGDNVTITTLTLSG 140
+ I ++ +G
Sbjct: 571 AGKRYVYIKNDGMKKECHGAG 591
Score = 45.3 bits (108), Expect = 1e-06
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH---SFRALSTLSH 63
+ RLS+ +I + + L +N L + ++ L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM---LSGYIPKEIGSMPYLFI 660
Query: 64 LDLAHNRIVAVSG---ASLAHLSNLTTLDLSHNFL 95
L+L HN I SG + L L LDLS N L
Sbjct: 661 LNLGHNDI---SGSIPDEVGDLRGLNILDLSSNKL 692
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 59.2 bits (143), Expect = 2e-11
Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+SL+ L N+ S++ L L +NQ+ +L + + L +++ +N
Sbjct: 99 PASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQLTMLPE----LPALLEYINADNN 150
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD 129
++ + ++L L + +N L L + +SL+ L + N + + P V
Sbjct: 151 QLTMLP----ELPTSLEVLSVRNNQLTFLPELP----ESLEALDVSTNLLESL-PAVPVR 201
Query: 130 NVTITTLTLS 139
N +
Sbjct: 202 NHHSEETEIF 211
Score = 55.7 bits (134), Expect = 3e-10
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
+ VL I N S+ L L N++ L + ++L HLD+ +N
Sbjct: 79 PPQITVLEITQNALISL----PELPASLEYLDACDNRLSTLPEL----PASLKHLDVDNN 130
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
++ + + L ++ +N L L + SL+ L + +N ++ + P++
Sbjct: 131 QLTMLP----ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFL-PELPE 180
Score = 54.2 bits (130), Expect = 1e-09
Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 61
+ + + N+ S+ + L +++ + L + + L D+ +
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLP---PQI 82
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
+ L++ N ++++ ++L LD N L L + SL+ L +D+N ++M
Sbjct: 83 TVLEITQNALISLP----ELPASLEYLDACDNRLSTLPEL----PASLKHLDVDNNQLTM 134
Query: 122 VTPDVIG 128
+ P++
Sbjct: 135 L-PELPA 140
Score = 53.8 bits (129), Expect = 2e-09
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR---ALSTLSHLDL 66
+SL+VLS+ +NQ + + + L +L N ++ L R + T
Sbjct: 159 PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
NRI + ++ L T+ L N L + ++ ++ + + SM
Sbjct: 215 RENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268
Score = 45.3 bits (107), Expect = 2e-06
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 39 SLSCHHNQIDVLEDHSFRALSTLSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSHNFLRA 97
S + +N I F A L NR AVS ++ + L L+ L +
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73
Query: 98 LTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L +L + L + N + + P++ + L
Sbjct: 74 LPDNL---PPQITVLEITQNALISL-PELPAS---LEYLDACD 109
Score = 39.6 bits (92), Expect = 1e-04
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Query: 10 LSSLKVLSIAHNQFSSVRR--GALAGLDKL-TSLSCHHNQIDVLEDHSFRALSTLSHLDL 66
SL+ L ++ N S+ ++ C N+I + + + +L + L
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIIL 237
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 115
N + + SL+ + + T + L +
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 59.1 bits (143), Expect = 3e-11
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S L L +N+ +S+ A L L N++ L S L L ++ N
Sbjct: 200 PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGN 251
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDV 126
R+ ++ S L +L + N L L + + L S + L+ N +S T
Sbjct: 252 RLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQA 303
Score = 57.6 bits (139), Expect = 8e-11
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S LK L ++ N+ +S+ +L L N++ L S L L + N
Sbjct: 220 PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRN 271
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 109
++ + SL HLS+ TT++L N L T + + S
Sbjct: 272 QLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALREITSA 310
Score = 57.6 bits (139), Expect = 8e-11
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 31/148 (20%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S L L +NQ +S+ L LS NQ+ L S L L +N
Sbjct: 160 PSELCKLWAYNNQLTSL----PMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNN 211
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK-----------------SLQEL 112
R+ ++ A S L L +S N L +L L + LK L L
Sbjct: 212 RLTSLP----ALPSGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSLPMLPSGLLSL 266
Query: 113 RLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ N ++ + P+ + + TT+ L G
Sbjct: 267 SVYRNQLTRL-PESLIHLSSETTVNLEG 293
Score = 57.2 bits (138), Expect = 1e-10
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S L L I NQ +S+ L LS NQ+ L S L L +N
Sbjct: 120 PSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNN 171
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
++ ++ S L L +S N L +L L +L +N ++
Sbjct: 172 QLTSLP----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLT 214
Score = 50.7 bits (121), Expect = 2e-08
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 61
++W RR + + +R + L+ + + L D + +
Sbjct: 10 AVWSAWRRAAPAEESRGRAAVVQKMRA---CLNNGNAVLNVGESGLTTLPDCLP---AHI 63
Query: 62 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
+ L + N + ++ A L TL++S N L +L L L L +
Sbjct: 64 TTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLP 117
Score = 38.7 bits (90), Expect = 3e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 3/108 (2%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S L LS+ NQ + + L L T+++ N + + R +++
Sbjct: 260 PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
R ++ L + ++L + P +DN
Sbjct: 319 RFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDN 364
Score = 38.3 bits (89), Expect = 4e-04
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
R V + L++ + L L L + L + DN+++ + P +
Sbjct: 26 GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTSL-PALPP 81
Query: 129 DNVTITTLTLSG 140
+ + TL +SG
Sbjct: 82 E---LRTLEVSG 90
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 58.8 bits (143), Expect = 3e-11
Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 2 SIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 61
RLS L+ ++I + + L +L+ N + L S +L+ L
Sbjct: 95 QFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA-SIASLNRL 152
Query: 62 SHLDLAH-NRIVAV--------SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 112
L + + + + L NL +L L +R+L I L++L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSL 211
Query: 113 RLDDNDISMVTPDVIGDNVTITTLTLSG 140
++ ++ +S + I + L L G
Sbjct: 212 KIRNSPLSAL-GPAIHHLPKLEELDLRG 238
Score = 54.2 bits (131), Expect = 1e-09
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH-NQIDVL--------EDHSFRALS 59
+ + L+ L++A N ++ ++A L++L LS ++ L + L
Sbjct: 125 QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 60 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
L L L I ++ AS+A+L NL +L + ++ L AL I L L+EL L
Sbjct: 184 NLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTA 241
Query: 120 SMVTPDVIGDNVTITTLTLSG 140
P + G + L L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKD 262
Score = 52.3 bits (126), Expect = 4e-09
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 10 LSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
++ ++ + + A +L + D LS L H+ +
Sbjct: 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDA 113
Query: 69 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIG 128
++ + ++ + L TL L+ N LRAL I L L+EL + P+ +
Sbjct: 114 AGLMELP-DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLA 171
Score = 49.9 bits (120), Expect = 3e-08
Identities = 28/141 (19%), Positives = 46/141 (32%), Gaps = 6/141 (4%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
+ L +L+ L + S+ +A L L SL ++ + L + L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGP-AIHHLPK 230
Query: 61 LSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSLQELRLDDND 118
L LDL + + L L L + L L D I L L++L L
Sbjct: 231 LEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCV 288
Query: 119 ISMVTPDVIGDNVTITTLTLS 139
P +I + +
Sbjct: 289 NLSRLPSLIAQLPANCIILVP 309
Score = 46.9 bits (112), Expect = 3e-07
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSHLDLA 67
L +LK L I ++ S++ A+ L KL L + F + L L L
Sbjct: 204 NLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILK 261
Query: 68 H-NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQELRLDDNDISM 121
+ ++ + + L+ L LDL L++ LI L + + + + +
Sbjct: 262 DCSNLLTLP-LDIHRLTQLEKLDLRGC--VNLSRLPSLIAQLPANCIILVPPHLQAQ 315
Score = 35.3 bits (82), Expect = 0.003
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSHLDLA 67
L L+ L + G L L + + L L+ L LDL
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLR 285
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 102
++ + +A L + + + L Q
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 56.9 bits (138), Expect = 3e-11
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C + L+S+ L + N+ S+ G L +LT LS NQI L D F
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
L+ L+ L L N++ ++ L+ L L L N L+++ + L SLQ++ L
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Query: 117 N 117
N
Sbjct: 134 N 134
Score = 31.5 bits (72), Expect = 0.059
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L+ LK L++ NQ SV G L L + H N D
Sbjct: 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137
Score = 26.1 bits (58), Expect = 4.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
S+ T L+L N L++L + L L +L L N I + V +T L L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 58.0 bits (140), Expect = 5e-11
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 9 RLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHL 64
+ +L+VL++ + + V A +L L HN + D S S L+ L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 119
+L+ + V + L+ LDLS+N L L + L L N
Sbjct: 259 NLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPF 308
Score = 57.2 bits (138), Expect = 8e-11
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 6 TVRRLSSLKVLSIAHNQFSS----VRRGALAGLDKLTSLSCHHNQIDVLED---HSFRAL 58
VR +L L ++ N + L L+ + ++ A
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 59 STLSHLDLAHNRIVAVSGASL-AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
L LDL+HN + +GA S L +L+LS L+ + + L L L L N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PAKLSVLDLSYN 284
Query: 118 DIS 120
+
Sbjct: 285 RLD 287
Score = 56.4 bits (136), Expect = 2e-10
Identities = 30/123 (24%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-------DVLEDHSFRALSTLS 62
LKVLSIA + + L++L N L F L L+
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDNDISM 121
+ V A A L LDLSHN LR L L L +
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267
Query: 122 VTP 124
V
Sbjct: 268 VPK 270
Score = 48.0 bits (114), Expect = 1e-07
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLD--KLTSLSCHHNQIDVLEDHSFR----ALSTLSH 63
+S L+ L++ + + + L L L+ + + L
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT----PLKSLQELRLDDNDI 119
L +A + S + L+TLDLS N + +LQ L L + +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 120 SMVTP 124
+
Sbjct: 214 ETPSG 218
Score = 37.2 bits (86), Expect = 7e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S L L+++ V +G A KL+ L +N++D L + +L L N
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGN 306
Query: 70 RIV 72
+
Sbjct: 307 PFL 309
Score = 28.7 bits (64), Expect = 0.58
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 36 KLTSLSCHHNQI-DVLEDHSFRAL--STLSHLDLAHNRIVAVSGASLA--HLSNLTTLDL 90
L L+ +I + + R L S L L L + + + L +L L+L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 91 SHNFLRALTQDLIT----PLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L L+ L + + + + ++TL LS
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 50.3 bits (121), Expect = 2e-08
Identities = 29/154 (18%), Positives = 46/154 (29%), Gaps = 28/154 (18%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDK----LTSLSCHHNQIDVLEDHSFRALS-------- 59
L+ L + +S L G+ L L+ N++ D L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL---GDVGMAELCPGLLHPSS 256
Query: 60 TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDLITPLKSLQ 110
L L + I A L +L L L+ N L R L + L+ P L+
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316
Query: 111 ELRLDDNDISMVTPDVIGD----NVTITTLTLSG 140
L + + N + L +S
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Score = 50.3 bits (121), Expect = 2e-08
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 28/154 (18%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDK----LTSLSCHHNQIDVLEDHSFRALS-------- 59
++ LS+ + + G L+ + L L N + D + L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQC 142
Query: 60 TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDLITPLKSLQ 110
L L L + + A S LA + L +S+N + R L Q L L+
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202
Query: 111 ELRLDDNDISMVTPDVIGD----NVTITTLTLSG 140
L+L+ ++ + ++ L L
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Score = 45.7 bits (109), Expect = 1e-06
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 31/160 (19%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFRALS--- 59
R K L++++N + L +L +L + + R L
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCGIV 223
Query: 60 ----TLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFL-----RALTQDLITP 105
+L L L N++ + L S L TL + + L + L
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA- 282
Query: 106 LKSLQELRLDDNDISMVTPDVIGD-----NVTITTLTLSG 140
+SL+EL L N++ ++ + + +L +
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322
Score = 45.7 bits (109), Expect = 1e-06
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 32/157 (20%)
Query: 11 SSLKVLSIAHNQFSSVRRG------ALAGLDKLTSLSCHHNQIDVLEDHSFRALS----- 59
S L+ L I ++ +G L + L LS N++ D R L
Sbjct: 256 SRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLAGNEL---GDEGARLLCETLLE 310
Query: 60 ---TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDLITPLK 107
L L + A + + L L +S+N L R L Q L P
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370
Query: 108 SLQELRLDDNDISMVTPDVIGD----NVTITTLTLSG 140
L+ L L D D+S + + N ++ L LS
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407
Score = 45.3 bits (108), Expect = 1e-06
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 37 LTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLS 91
+ SL ++ D L + L + ++ L L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 92 HNFL-----RALTQDLITPLKSLQELRLDDNDIS----MVTPDVIGDNVTITTLTLSG 140
N L + Q L TP +Q+L L + ++ V + T+ L LS
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Score = 44.6 bits (106), Expect = 2e-06
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 11 SSLKVLSIAHNQFSSVRRGALA-GLDK---LTSLSCHHNQIDVLEDHSFRALS------- 59
L+ L + F++ + L + L L +N++ ED R L
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL---EDAGVRELCQGLGQPG 369
Query: 60 -TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDLITPLKSL 109
L L LA + S +SLA +L LDLS+N L L + + P L
Sbjct: 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 429
Query: 110 QELRLDDNDIS 120
++L L D S
Sbjct: 430 EQLVLYDIYWS 440
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 59 STLSHLDLAHNRIVAVSGASLAH-LSNLTTLDLSHNFL-----RALTQDLITPLKSLQEL 112
+ LD+ + A L L + L L + ++ L +L EL
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAEL 61
Query: 113 RLDDNDISMVTPDVIGD-----NVTITTLTLSG 140
L N++ V + + I L+L
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 94
Score = 29.5 bits (67), Expect = 0.30
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 28/128 (21%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALA-------GLDKLTSLSCHHNQIDVLEDHSFRALS- 59
+ L L I++N+ G L L + D S +L+
Sbjct: 338 AQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSVLRVLWLADCDVS---DSSCSSLAA 392
Query: 60 ------TLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL-- 106
+L LDL++N + + + + L L L + +D + L
Sbjct: 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452
Query: 107 --KSLQEL 112
SL+ +
Sbjct: 453 DKPSLRVI 460
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 50.1 bits (120), Expect = 3e-08
Identities = 32/166 (19%), Positives = 54/166 (32%), Gaps = 40/166 (24%)
Query: 11 SSLKVLSIAHNQFS-------------SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 57
+ L+ L + +N L S+ C N++ E+ S +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL---ENGSMKE 178
Query: 58 LS-------TLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFL-----RALTQ 100
+ L + + N I + LA+ L LDL N AL
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA- 237
Query: 101 DLITPLKSLQELRLDDNDISMVTPDVIGD------NVTITTLTLSG 140
+ +L+EL L+D +S + D N+ + TL L
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283
Score = 45.9 bits (109), Expect = 8e-07
Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 30/138 (21%)
Query: 8 RRLSSLKVLSIAHNQF-----SSVRRGALAGLDKLTSLSCHHNQI---------DVLEDH 53
+ L + + N + LA +L L N L+
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLA------HLSNLTTLDLSHNFL-----RALTQDL 102
L L L + A A++ L TL L +N + R L +
Sbjct: 244 P-----NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298
Query: 103 ITPLKSLQELRLDDNDIS 120
+ L L L+ N S
Sbjct: 299 DEKMPDLLFLELNGNRFS 316
Score = 44.7 bits (106), Expect = 2e-06
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 24/127 (18%)
Query: 37 LTSLSCHHNQIDVLEDHSF----RALSTLSHLDLAHNRI----VAVSGASLAHLSNLTTL 88
+ S + I ++ S ++ + L+ N I ++A +L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 89 DLSHNF-----------LRALTQDLITPLKSLQELRLDDNDISMVTPDVIGD----NVTI 133
+ S F LR L Q L+ L +RL DN + + D + +
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 134 TTLTLSG 140
L L
Sbjct: 125 EHLYLHN 131
Score = 40.1 bits (94), Expect = 7e-05
Identities = 22/170 (12%), Positives = 45/170 (26%), Gaps = 39/170 (22%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGA------LAGLDKLTSLSCHHNQIDVLEDHSFRAL--- 58
S+K + ++ N + A +A L ++D AL
Sbjct: 29 LEDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86
Query: 59 -------STLSHLDLAHNRI----VAVSGASLAHLSNLTTLDLSHNFL-----RALTQDL 102
L + L+ N L+ + L L L +N L + + L
Sbjct: 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146
Query: 103 ITPL--------KSLQELRLDDNDISMVTPDVIGD----NVTITTLTLSG 140
L+ + N + + + + T+ +
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196
Score = 37.4 bits (87), Expect = 6e-04
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 60 TLSHLDLAHNRIVAVS----GASLAHLSNLTTLDLSHNFL-----RALTQDLITPLKSLQ 110
++ L + I A L ++ + LS N + R L++++ + K L+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLE 63
Query: 111 ELRLDDNDISMVTP----------DVIGDNVTITTLTLSG 140
D V + + T+ LS
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 48.7 bits (117), Expect = 9e-08
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 9 RLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L L L I N A+A L +L L H + + TL LD +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 68 HNRIVAVSG---ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL-QELRLDDNDISMVT 123
+N + SG S++ L NL + N + D L + + N ++
Sbjct: 134 YNAL---SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 124 PDVIGDNVTITTLTLSG 140
P N+ + + LS
Sbjct: 191 PPTFA-NLNLAFVDLSR 206
Score = 41.8 bits (99), Expect = 2e-05
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 10 LSSL-KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH---SFRALSTLSHLD 65
S L ++I+ N+ + A L L + N LE F + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM---LEGDASVLFGSDKNTQKIH 227
Query: 66 LAHNRIVAVSGA--SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
LA N + + + NL LDL +N + +T LK L L + N++
Sbjct: 228 LAKNSL---AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 39.1 bits (92), Expect = 2e-04
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 31/90 (34%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
+ + + +A N + L L+ LDL +
Sbjct: 219 SDKNTQKIHLAKNSLA----FDL---------------------GKVGLSKNLNGLDLRN 253
Query: 69 NRIVAVSG---ASLAHLSNLTTLDLSHNFL 95
NRI G L L L +L++S N L
Sbjct: 254 NRI---YGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 38.3 bits (90), Expect = 3e-04
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 53 HSFRALSTLSHLDLAHNRIVAVSG--ASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSL 109
+ +++LDL+ + +SLA+L L L + N L I L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 110 QELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L + ++S PD + T+ TL S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Score = 27.9 bits (63), Expect = 1.2
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP----LKSLQELRL-DDND 118
D + + V + + LDLS L I L L L + N+
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINN 88
Query: 119 ISMVTPDVIGDNVTITTLTLSG 140
+ P I + L ++
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITH 110
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 48.2 bits (115), Expect = 1e-07
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 17/149 (11%)
Query: 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF--RALSTLS 62
C ++ L +L+ + + R L + L L H+ ++ F LS+L
Sbjct: 20 CPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE----FQNQRFSAEVLSSLR 75
Query: 63 HLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDD 116
L+LA R+ V +A + L ++L+ L A + L+ ++L L
Sbjct: 76 QLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL 135
Query: 117 NDISMVTPDVIGD-----NVTITTLTLSG 140
N + + D ITTL LS
Sbjct: 136 NSLGPEACKDLRDLLLHDQCQITTLRLSN 164
Score = 46.2 bits (110), Expect = 6e-07
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 12 SLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQIDVLEDHSFRAL--------STLS 62
+L +++A Q L + L N + + + L ++
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL---GPEACKDLRDLLLHDQCQIT 158
Query: 63 HLDLAHNRIVAVSGASLAHL----SNLTTLDLSHNFL-----RALTQDLITPLKSLQELR 113
L L++N + A A L +++T L L H L L L + LQEL
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELN 217
Query: 114 LDDNDIS----MVTPDVIGDNVTITTLTLSG 140
+ N + ++ ++ L L
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYF 248
Score = 38.5 bits (90), Expect = 3e-04
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 25/132 (18%)
Query: 11 SSLKVLSIAHNQFSSVRRGALA-GLD---KLTSLSCHHNQIDVLEDHSFRAL-------S 59
+ L +++N ++ L GL +T LS H + D L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL---GDEGLELLAAQLDRNR 211
Query: 60 TLSHLDLAHNRIVAVSGASLAHL----SNLTTLDLSHNFL-----RALTQDL--ITPLKS 108
L L++A+N + +LA +L L L N L + L
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271
Query: 109 LQELRLDDNDIS 120
+ + +S
Sbjct: 272 VVVSLTEGTAVS 283
Score = 27.8 bits (62), Expect = 1.4
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 26/109 (23%)
Query: 11 SSLKVLSIAHNQFSSVRRGALA-------GLDKLTSLSCHHNQID--------------- 48
SL++L + N+ SS R L G ++ +
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298
Query: 49 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL----SNLTTLDLSHN 93
+ + L DL +R ++ A L + L
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 47.8 bits (114), Expect = 2e-07
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 31/158 (19%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFRAL------- 58
+ L ++ N S+ L +TSL+ N + + L
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQILAAI 78
Query: 59 -STLSHLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNFL-----RALTQDLITPLK 107
+ ++ L+L+ N + S L +T LDL N Q
Sbjct: 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 108 SLQELRLDDNDISMVTPDVIGD-----NVTITTLTLSG 140
S+ L L ND+ + + D + + +L L G
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176
Score = 47.4 bits (113), Expect = 2e-07
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFRALS------ 59
+S+ L+++ N L + +TSL+ N + S L
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL---SYKSSDELVKTLAAI 107
Query: 60 --TLSHLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNFL-----RALTQDLITPLK 107
T++ LDL N + S + +++T+L+L N L L Q L
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167
Query: 108 SLQELRLDDNDISMVTPDVIGD-----NVTITTLTLSG 140
++ L L N+++ + ++T+L LS
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205
Score = 40.5 bits (95), Expect = 5e-05
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 27/134 (20%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDK-----LTSLSCHHNQIDVLEDHSFRALS------ 59
+++ L++ N +S LA +TSL N + S+ L+
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG---LKSYAELAYIFSSI 223
Query: 60 --TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFLRALTQDLITPL------- 106
+ L+L N + S +L L +L T+ L ++ ++ ++++ L
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283
Query: 107 KSLQELRLDDNDIS 120
+ + + + +I
Sbjct: 284 QKIILVDKNGKEIH 297
Score = 36.6 bits (85), Expect = 0.001
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 77 ASLAHLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDISMVTPDVIGD-- 129
+ +T+LDLS N L L Q S+ L L N + D +
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 130 ---NVTITTLTLSG 140
+T+L LSG
Sbjct: 76 AAIPANVTSLNLSG 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 46.1 bits (108), Expect = 6e-07
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 20/139 (14%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 58
++ + +LK L I V + L L L + D D
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242
Query: 59 S---------TLSHLDLAHNRIVAVSGASLAH---LSNLTTLDLSHNFL-----RALTQD 101
L L + V L L T+D+S L R L
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302
Query: 102 LITPLKSLQELRLDDNDIS 120
+ +K L+ + + N +S
Sbjct: 303 V-DKIKHLKFINMKYNYLS 320
Score = 40.3 bits (93), Expect = 6e-05
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 31/120 (25%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
R +LK L I + +V L L +D++
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFL---------------------ESDILPQLETMDIS 287
Query: 68 HNRI----VAVSGASLAHLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDND 118
+ + + + +L +++ +N+L + L + L + + + + D+D
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI-DVSDSQEYDDD 346
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 45.4 bits (107), Expect = 1e-06
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLS-NLTTLDLSHNF 94
L SC + ++E++ + L L+L++NR+ + +S+ + NL L+LS N
Sbjct: 152 LNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207
Query: 95 LRALTQDLITPLKS--LQELRLDDN 117
L++ + + +K L+EL LD N
Sbjct: 208 LKSERE--LDKIKGLKLEELWLDGN 230
Score = 35.0 bits (80), Expect = 0.004
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 52 DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSL 109
D A + L+ + ++ L +L+LS+N L L ++ +L
Sbjct: 140 DPDLVAQNIDVVLNRRSCMAATLRIIEE-NIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 198
Query: 110 QELRLDDNDIS 120
+ L L N++
Sbjct: 199 KILNLSGNELK 209
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 41.4 bits (98), Expect = 1e-05
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 2 SIWCTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 53
++ C+ + L+S+ +VL + NQ + + G L +LT L +NQ+ VL
Sbjct: 13 TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
F L+ L+ L L N++ ++ + +L +LT + L +N
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 37.2 bits (87), Expect = 5e-04
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+T L L N+I + L+ LT LDL +N L L + L L +L L+DN
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 119 ISMVTPDVIGDNVT-ITTLTLSG 140
+ + P DN+ +T + L
Sbjct: 90 LKSI-PRGAFDNLKSLTHIWLLN 111
Score = 31.0 bits (71), Expect = 0.071
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L+ L LS+ NQ S+ RGA L LT + +N D
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 40.0 bits (94), Expect = 7e-05
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHL----SNLTTLDLSHNFL-----RALTQDLITPLKSL 109
+ + + R +LA + + L +L++ NF+ AL + L + SL
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS-NTSL 123
Query: 110 QELRLDDNDISMVTP------DVIGDNVTITTLTLSG 140
ELR+D+ + +++ N T+
Sbjct: 124 IELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160
Score = 35.7 bits (83), Expect = 0.002
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDK----LTSLSCHHNQIDVLEDHSFRAL-------S 59
+ +K SI + + ALA + K L SL+ N I AL +
Sbjct: 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS---GSGILALVEALQSNT 121
Query: 60 TLSHLDLAHNR--IVAVSGASLAHL----SNLTTLDLSHN 93
+L L + + + +A++ + L
Sbjct: 122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161
Score = 34.6 bits (80), Expect = 0.004
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 22/109 (20%)
Query: 30 ALAGLDKLTSLSCHHNQIDVLEDHSFRAL-------STLSHLDLAHNRI-----VAVSGA 77
AL + S + + D AL +TL L++ N I +A+ A
Sbjct: 60 ALKTNTYVKKFSIVGTRSN---DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116
Query: 78 SLAHLSNLTTLDLSHNFLR---ALTQDLITPLK---SLQELRLDDNDIS 120
L ++L L + + + ++ L+ +L +
Sbjct: 117 -LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164
Score = 29.6 bits (67), Expect = 0.28
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 11 SSLKVLSIAHNQFSSVRRGALA---GL---DKLTSLSCHHNQIDVLEDHSFRAL------ 58
++LK L++ N S G LA L L L + L ++ +
Sbjct: 93 NTLKSLNVESNFISG--SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEK 149
Query: 59 -STLSHLDLAHNRIVAVSGASLAHLSNLTTL 88
+TL + AS A ++N +
Sbjct: 150 NTTLLKFGYHFTQQGPRLRASNAMMNNNDLV 180
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 39.2 bits (92), Expect = 9e-05
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 5 CTVRRLSSL--------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 56
C RL+S+ + L + +NQ + + G L L L + N++ + F
Sbjct: 19 CQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L+ L+ LDL N + ++ + +L +LT + L +N
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 37.2 bits (87), Expect = 6e-04
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+ L L +N+I + HL NL L + N L A+ + L L +L L+DN
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 119 ISMVTPDVIGDNVT-ITTLTLSG 140
+ + P DN+ +T + L
Sbjct: 93 LKSI-PRGAFDNLKSLTHIYLYN 114
Score = 31.1 bits (71), Expect = 0.080
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 48
+L+ L L + N S+ RGA L LT + ++N D
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 37.5 bits (87), Expect = 3e-04
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 59 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
+ L L N + A+ L L L T L N R
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 37.5 bits (87), Expect = 3e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+ T L L+ N L AL L+ L +L+ L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 33.6 bits (77), Expect = 0.008
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 46
L + N +++ G L L L + N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 32.1 bits (73), Expect = 0.028
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
T L N + L AL L L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 27.5 bits (61), Expect = 1.1
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 108 SLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
EL L N+++ + P ++ + T L
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 36.4 bits (84), Expect = 0.001
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 26/127 (20%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRAL-------STLSHLDLAHNRIVAVSGASLAHL----SN 84
L ++ N + + R+L + LA+ I L L +
Sbjct: 42 DLKEVNI--NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS 99
Query: 85 LTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDISMVTP-------DVIGDNVT 132
L L++ NFL L + + +S+ E + D+ S++ I +N +
Sbjct: 100 LRVLNVESNFLTPELLARLLRSTLVT-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENES 158
Query: 133 ITTLTLS 139
+ + +S
Sbjct: 159 LLRVGIS 165
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 35.3 bits (81), Expect = 0.004
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 1/112 (0%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
L + + S AL+G +L LS + + + S L+ L+L+
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297
Query: 68 HNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 118
+ + + L L L + A + L + K L+ELR+ ++
Sbjct: 298 YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 33.4 bits (76), Expect = 0.015
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 4/113 (3%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 64
R SL + + + + A A L++ S + + + + L L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Query: 65 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDD 116
L++ + + + LDL + L LI +L+ L +
Sbjct: 276 GLSYMGPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
Score = 28.0 bits (62), Expect = 1.0
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALS----TLSHLDLAHNRIVAVSGASLA-HLSNL 85
L G KL + + Q L D + + + L + + NL
Sbjct: 432 LIGCKKLRRFAFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490
Query: 86 TTLDLSH-NFLRALTQDLITPLKSLQELRLDDNDISM 121
L++ F +T L SL+ L + SM
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527
Score = 26.1 bits (57), Expect = 5.5
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 18/109 (16%)
Query: 32 AGLDKLTSLSCHHNQIDVLEDHSFRALST-----LSHLDLAHNRIVAVSGASLAHLS--- 83
L +L S+ + D L+ L L L ++ + L +
Sbjct: 109 NNLRQLKSVHFRRMIVS---DLDLDRLAKARADDLETLKL--DKCSGFTTDGLLSIVTHC 163
Query: 84 -NLTTLDLSHNFLRALTQDLITPL----KSLQELRLDDNDISMVTPDVI 127
+ TL + + + L SL+ L + + ++P +
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 32.9 bits (75), Expect = 0.018
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 13 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH-------LD 65
++ + + S+ + GL + + +ED LS L + ++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLENLQKSMLEME 120
Query: 66 LAHNRIVAVSG-ASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSLQELRLD 115
+ V G +L H NL L LS ++ + + SL L L
Sbjct: 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 26.7 bits (59), Expect = 2.1
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 26 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 85
+R GA+ + + L + +D + I+++ + L +
Sbjct: 32 LRCGAMV---RYHGQQRWQKDYNHLPTGPLDKY-KIQAIDATDSCIMSIGFDHMEGLQYV 87
Query: 86 TTLDLSH------NFLRALTQDLITPLKSLQELRLDDN 117
+ L L L+Q L KS+ E+ +
Sbjct: 88 EKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISC 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.11
Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 76/210 (36%)
Query: 4 WCTVRRLSSLK-VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-----DVLEDHSF-R 56
W ++ +S + VL + + + D +++ + I +L+ +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 57 ALSTLSHLDLAHNRIV--------------------AVSGASLAHLS------NLT---T 87
L L ++ + + +S A+ H+S LT
Sbjct: 246 CLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 88 LDLSHNFLRALTQDL------ITPL------KSLQE--LRLD--------------DNDI 119
L +L QDL P +S+++ D ++ +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 120 SMVTPD----------VIGDNVTITTLTLS 139
+++ P V + I T+ LS
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 30.6 bits (69), Expect = 0.16
Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST----LSHLDL 66
L IA S LA + V+E + + + L +L L
Sbjct: 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125
Query: 67 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRL 114
R+ +LA SNL L+LS + Q L++ L EL L
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSG--CSGFSEFALQTLLSSCSRLDELNL 175
Score = 28.3 bits (63), Expect = 0.76
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 50 LEDHSFRALST---LSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 105
L++ F+ L HL L+ I+ + L + L TL + Q L
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL--- 291
Query: 106 LKSLQELRLDDNDISMVTPDVIGDNVT 132
++L L+++ + + + IG+
Sbjct: 292 KEALPHLQINCSHFTTIARPTIGNKKN 318
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.19
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 14 KVLSIA-HN----QFSSVRRGALAGLDKLTSL--SCHHNQIDVLE-DHSFRALSTLSHL 64
++ I +N Q+ V G L LD +T++ +ID++E S HL
Sbjct: 1839 WLVEIVNYNVENQQY--VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.22
Identities = 4/30 (13%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 107 KSLQELRLDDNDISMVTPD---VIGDNVTI 133
++L++L + + D + T+
Sbjct: 20 QALKKL---QASLKLYADDSAPALAIKATM 46
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 27.8 bits (62), Expect = 1.3
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 64 LDLAHNRIVAVSGASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSLQELRLDDNDISMV 122
L N V+ S + L +SH ++R+L +T LK L +++ V
Sbjct: 175 FPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSV 234
Query: 123 TP 124
TP
Sbjct: 235 TP 236
>3dkz_A Thioesterase superfamily protein; Q7W9W5, borpa, PF03061, NESG,
BPR208C, structural genomics, PSI-2, protein structure
initiative; 2.40A {Bordetella parapertussis}
Length = 142
Score = 26.5 bits (59), Expect = 2.1
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 103
L ++ LD + + + T+D++ +F+ DL+
Sbjct: 52 TLMSV--LDFT----LGAAIRGDTPEVGVATIDMNTSFMSPGRGDLV 92
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast
structural genomics consortium, BTR28, methyltrans PSI;
2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Length = 242
Score = 26.0 bits (58), Expect = 4.2
Identities = 5/72 (6%), Positives = 14/72 (19%), Gaps = 16/72 (22%)
Query: 48 DVLEDHSFRALSTLSHLDLAHNRIVA----VSGASLAHLSNLTTLDLS-------HNFLR 96
+ + + + + + L + +D H
Sbjct: 16 PLEQVLPSYNTEIIRGIRH----FIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPE 71
Query: 97 ALTQDLITPLKS 108
+ PL
Sbjct: 72 D-ISGYLKPLAG 82
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FAD; 2.69A {Listeria monocytogenes}
Length = 322
Score = 26.0 bits (58), Expect = 4.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 58 LSTLSHLDLAHNRIVAVSGASLAHLSN 84
L L ++ + +IVA+SGA L +
Sbjct: 104 LDLLQTIERNNTQIVAMSGAKLIDTAK 130
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside
deacetylase (MSHB); rossmann fold, zinc aminohydrolase;
HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP:
c.134.1.1 PDB: 1q7t_A*
Length = 303
Score = 26.1 bits (57), Expect = 4.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALS 59
K+ +L+ H Q+ V ALS
Sbjct: 237 KVAALAAHATQVVVGPTGRAAALS 260
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan
synthesis, cell WALL, cell division, oxidoreductase,
NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus
aureus} SCOP: d.145.1.2 d.146.1.1
Length = 326
Score = 26.0 bits (58), Expect = 5.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 58 LSTLSHLDLAHNRIVAVSGASLAHLSN 84
L +L H++++ + I+A SGA++ +S
Sbjct: 98 LLSLDHIEVSDDAIIAGSGAAIIDVSR 124
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG,
STRU genomics, PSI-2, protein structure initiative;
2.29A {Lactobacillus brevis atcc 367}
Length = 296
Score = 25.6 bits (57), Expect = 6.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 50 LEDHSFRALSTLSHLDL 66
L+D +FRA+ TL+ +DL
Sbjct: 28 LDDMTFRAVKTLTAVDL 44
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta
barrel, chymotrypsin-type cystein protease, enzyme-
peptide complex; 1.80A {Tobacco etch virus} SCOP:
b.47.1.3 PDB: 1lvb_A 1q31_A
Length = 229
Score = 25.2 bits (55), Expect = 7.3
Identities = 3/47 (6%), Positives = 20/47 (42%)
Query: 71 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+V+ + + + + ++N+ ++ ++ + L + + +
Sbjct: 163 LVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSG 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.369
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,060,891
Number of extensions: 114007
Number of successful extensions: 2563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 506
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)