RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8880
(141 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 55.0 bits (131), Expect = 2e-10
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
L LT L+ + N I + +L+ L L A+N++ VS SLA+L+N+ L HN
Sbjct: 306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHN 361
Query: 94 FLRALTQDLITPLKSLQELRLDDN 117
+ LT + L + +L L+D
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383
Score = 51.9 bits (123), Expect = 3e-09
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 28/160 (17%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-------- 52
+ T+ L++L L +A+NQ S++ L+GL KLT L NQI +
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTALT 288
Query: 53 ------------HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 100
L L++L L N I +S ++ L+ L L ++N + ++
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS 346
Query: 101 DLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L ++ L N IS +TP + + IT L L+
Sbjct: 347 --LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382
Score = 40.0 bits (92), Expect = 3e-05
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 45 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 104
+ +V + S L ++ L I ++ G + +L+NLT ++ S+N L IT
Sbjct: 30 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD-----IT 82
Query: 105 PLKSLQELR 113
PLK+L +L
Sbjct: 83 PLKNLTKLV 91
Score = 37.3 bits (85), Expect = 3e-04
Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 90
LD++T+L I ++ L+ L+ ++ ++N++ ++ L +L+ L + +
Sbjct: 40 QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILM 95
Query: 91 SHNF 94
++N
Sbjct: 96 NNNQ 99
Score = 34.6 bits (78), Expect = 0.002
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 78 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
S L +TTL ++++ D + L +L ++ +N ++ +TP
Sbjct: 39 SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP 83
Score = 30.0 bits (66), Expect = 0.077
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 6 TVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 45
++ L+++ LS HNQ S + LA L ++T L +
Sbjct: 346 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383
Score = 26.9 bits (58), Expect = 0.87
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 101
+ V + L+ L L +N+I ++ L L+NL L L+ N L+ +
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--G 235
Query: 102 LITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L +L +L L +N IS + P + +T L L
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272
Score = 24.6 bits (52), Expect = 5.4
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 46
L++L ++ ++NQ + + L L KL + ++NQ
Sbjct: 65 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ 99
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 49.2 bits (115), Expect = 2e-08
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 52 DHSFRALSTLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDL 102
+ S L L LA + S +SLA +L LDLS+N L L + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 103 ITPLKSLQELRLDDNDISMVTPDVIGD 129
P L++L L D S D +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQA 448
Score = 47.3 bits (110), Expect = 1e-07
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 37 LTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVS----GASLAHLSNLTTLDLS 91
+ SL ++ D L + L + ++L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 92 HNFL-----RALTQDLITPLKSLQELRLDDNDISM 121
N L + Q L TP +Q+L L + ++
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
Score = 41.9 bits (96), Expect = 9e-06
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 61 LSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRL 114
+ LD+ + A L L + L L + ++ L +L EL L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNL 62
Query: 115 DDNDISMVTPDVIGD-----NVTITTLTLSG 140
N++ V + + I L+L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
Score = 39.6 bits (90), Expect = 5e-05
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 26/109 (23%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
S L+VL +A S +LA + A +L LDL++N
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLA--------------------ATLLANHSLRELDLSNNC 408
Query: 71 IVAVSGASLA-----HLSNLTTLDLSHNFLRALTQDLITPL-KSLQELR 113
+ L L L L + +D + L K LR
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457
Score = 39.6 bits (90), Expect = 6e-05
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 84 NLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMVTPDVIGD----NVTITTLTL 138
++ +LD+ L +L+ L+ Q +RLDD ++ I N + L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 139 SG 140
Sbjct: 63 RS 64
Score = 32.3 bits (71), Expect = 0.018
Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 25/91 (27%)
Query: 9 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 68
L +V+ + + R ++ + R L+ L+L
Sbjct: 25 LLQQCQVVRLDDCGLTEARCKDIS--------------------SALRVNPALAELNLRS 64
Query: 69 NRIVAVSGASLAHL-----SNLTTLDLSHNF 94
N + V + + L L +
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 48.3 bits (113), Expect = 4e-08
Identities = 36/140 (25%), Positives = 53/140 (37%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
T L L L + + G GL L L N + L D +FR L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 120
L+HL L NRI +V + L +L L L N + + L L L L N++S
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 121 MVTPDVIGDNVTITTLTLSG 140
+ + + + L L+
Sbjct: 215 ALPTEALAPLRALQYLRLND 234
Score = 47.1 bits (110), Expect = 1e-07
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
T R L +L L + N+ SSV A GL L L H N++ + H+FR L L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L L N + A+ +LA L L L L+ N LQ+ R +++
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCS 263
Query: 123 TPD 125
P
Sbjct: 264 LPQ 266
Score = 44.4 bits (103), Expect = 8e-07
Identities = 39/117 (33%), Positives = 57/117 (48%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
R L++L+ L + N ++ L LT L H N+I + + +FR L +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
L L L NR+ V + L L TL L N L AL + + PL++LQ LRL+DN
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 34.0 bits (76), Expect = 0.004
Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 20/114 (17%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
R L SL L + N+ + V A L +L +L N + L + L L
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 63 HLDLAHNRIV--------------------AVSGASLAHLSNLTTLDLSHNFLR 96
+L L N V V + L+ L+ N L+
Sbjct: 229 YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
Score = 29.4 bits (64), Expect = 0.13
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Query: 35 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD-LSHN 93
+ + SC + + + + L NRI V AS NLT L S+
Sbjct: 11 EPKVTTSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 94 FLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLS 139
R Q D+ + V P + TL L
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 48.3 bits (113), Expect = 4e-08
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 101
+ N +L L++++N+++ + A L L S N L + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322
Query: 102 LITPLKSLQELRLDDNDISMVTPDVIG 128
++L++L ++ N + PD+
Sbjct: 323 ----PQNLKQLHVEYNPLREF-PDIPE 344
Score = 44.4 bits (103), Expect = 1e-06
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
I SL+ L++++N+ + A +L L N + + +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQN 325
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91
L L + +N + ++ L ++
Sbjct: 326 LKQLHVEYNPLREFP----DIPESVEDLRMN 352
Score = 35.6 bits (80), Expect = 0.001
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 68 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVI 127
R +AVS L+L++ L +L + L+ L N ++ + P++
Sbjct: 23 EQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELP 77
Query: 128 G 128
Sbjct: 78 Q 78
Score = 35.2 bits (79), Expect = 0.002
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
Query: 41 SCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 100
+ ++ F LS L N + +L L++S+N L L
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA 301
Query: 101 DLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L+ L N ++ V P++ + L +
Sbjct: 302 L----PPRLERLIASFNHLAEV-PELPQ---NLKQLHVEY 333
Score = 32.5 bits (72), Expect = 0.012
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 95
+ L ++ + L + L L + N + + +L +L + +N L
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNL 90
Query: 96 RAL 98
+AL
Sbjct: 91 KAL 93
Score = 26.3 bits (56), Expect = 1.5
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 11 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 70
L + + SS+ L SL N + L + +L L + +N
Sbjct: 38 RQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNN 89
Query: 71 I 71
+
Sbjct: 90 L 90
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 48.1 bits (113), Expect = 5e-08
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
L +N+I ++D F+ L L L L +N+I +S + A L L L LS N L+
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 97 ALTQDLITPLKSLQELRLDDNDISM 121
L + + L+ L+ + +
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRK 117
Score = 47.0 bits (110), Expect = 1e-07
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
L + C ++ + + LDL +N+I + +L NL TL L +N +
Sbjct: 12 LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 97 ALTQDLITPLKSLQELRLDDNDISMVTPD 125
++ PL L+ L L N + +
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEK 97
Score = 43.9 bits (102), Expect = 2e-06
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
SL L + N+ + V +L GL+ L L N I +++ S L L L +N
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229
Query: 70 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISM 121
++V V G LA + + L +N + A+ + P S + L N +
Sbjct: 230 KLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
Score = 39.3 bits (90), Expect = 6e-05
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ LDL +N + + LK+L L L +N IS ++P V + L LS
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88
Score = 34.6 bits (78), Expect = 0.002
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 16 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 75
L + S + GA G+ KL+ + I + +L+ L L N+I V
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD 187
Query: 76 GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITT 135
ASL L+NL L LS N + A+ + L+EL L++N + + P + D+ I
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQV 246
Query: 136 LTLSG 140
+ L
Sbjct: 247 VYLHN 251
Score = 33.9 bits (76), Expect = 0.004
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 16 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVA 73
L + N+ + VR+ GL+++ + N + E+ +F+ + LS++ +A I
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTI 133
+ +LT L L N + + + L +L +L L N IS V + + +
Sbjct: 165 IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221
Query: 134 TTLTLSG 140
L L+
Sbjct: 222 RELHLNN 228
Score = 32.3 bits (72), Expect = 0.013
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAG------LDKLTSLSCHHNQIDVLEDH- 53
+ + + ++V+ + +N S++ + +S N + E
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291
Query: 54 -SFRALSTLSHLDL 66
+FR + + + L
Sbjct: 292 STFRCVYVRAAVQL 305
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 42.6 bits (98), Expect = 3e-06
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 37 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
+N ++ L + F S LD++ RI ++ L +L L +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 39.9 bits (91), Expect = 3e-05
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 46
S +L I+ + S+ L L KL + S ++ +
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 39.1 bits (89), Expect = 6e-05
Identities = 13/75 (17%), Positives = 25/75 (33%)
Query: 40 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 99
L + N I + + +F +N + + S LD+S + +L
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 100 QDLITPLKSLQELRL 114
+ LK L+
Sbjct: 218 SYGLENLKKLRARST 232
Score = 35.7 bits (80), Expect = 0.001
Identities = 8/70 (11%), Positives = 16/70 (22%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
C ++ +N + G L +I L + L
Sbjct: 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 226
Query: 61 LSHLDLAHNR 70
L + +
Sbjct: 227 LRARSTYNLK 236
Score = 30.6 bits (67), Expect = 0.053
Identities = 5/55 (9%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138
+ + + + DL ++ ELR + ++ + + +
Sbjct: 9 SNRVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
Score = 30.3 bits (66), Expect = 0.069
Identities = 6/57 (10%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 38 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 94
C +++ + R L ++ + + + +L +++S N
Sbjct: 11 RVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64
Score = 29.9 bits (65), Expect = 0.099
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 68 HNRIVAVSGASLAHL-----SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 121
NR+ + + + N L LR + + + L+++ + ND+
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Score = 28.7 bits (62), Expect = 0.23
Identities = 10/77 (12%), Positives = 20/77 (25%)
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMV 122
L L N I + + +N L L D+ L + I +
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216
Query: 123 TPDVIGDNVTITTLTLS 139
+ + + +
Sbjct: 217 PSYGLENLKKLRARSTY 233
Score = 24.5 bits (51), Expect = 5.1
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 12 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
S +V ++ + + L ++ V++ +F L ++++ N
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNA---IELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.7 bits (97), Expect = 4e-06
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 8 RRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 67
R S + L + + L + L+ + L + L L+L+
Sbjct: 19 RYDGSQQALDLKGLRSDP----DLVAQNIDVVLNRRSSMAATLRII-EENIPELLSLNLS 73
Query: 68 HNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPD 125
+NR+ + + + NL L+LS N L++ + L+EL LD N +S D
Sbjct: 74 NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133
Score = 32.9 bits (74), Expect = 0.007
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 51 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT--QDLITPLKS 108
D A + L+ + + ++ L +L+LS+N L L ++ +
Sbjct: 34 SDPDLVAQNIDVVLNRRSSMAATLRIIE-ENIPELLSLNLSNNRLYRLDDMSSIVQKAPN 92
Query: 109 LQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
L+ L L N++ + + L L G
Sbjct: 93 LKILNLSGNELKSERELDKIKGLKLEELWLDG 124
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 40.9 bits (95), Expect = 5e-06
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
+++ C + +L + L ++HN+ + ALA L L L N ++ ++ +
Sbjct: 10 LTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRLQ 68
Query: 61 LSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFL---RALTQDLITPLKSLQEL 112
L L +NR+ + L L L+L N L + + L L S+ +
Sbjct: 69 --ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 37.4 bits (86), Expect = 1e-04
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 14 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 73
+VL +AH + + L L +T L HN++ L + AL L L + N +
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57
Query: 74 VSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDIS 120
V G + +L L L L +N L+ + L L L N +
Sbjct: 58 VDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.9 bits (94), Expect = 2e-05
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 40 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 99
+ L+ LDL +NRI L L L +L++S N L
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 100 QDLITPLKSLQELRLDDN 117
L+ +N
Sbjct: 285 PQG-GNLQRFDVSAYANN 301
Score = 32.0 bits (71), Expect = 0.017
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 1 MSIWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 60
V +L L + +N+ L L L SL+ N + E L
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQR 292
Query: 61 LSHLDLAHNR 70
A+N+
Sbjct: 293 FDVSAYANNK 302
Score = 30.5 bits (67), Expect = 0.057
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
NL LDL +N + +T LK L L + N++ P G+ +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 40.2 bits (92), Expect = 3e-05
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 46 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA-----HLSNLTTLDLSHNFLRALTQ 100
V++ S L L L +N I + +L + +L L+L+ N
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE-D 318
Query: 101 DLITPLKSLQELR-------LDDND 118
D++ ++ + R LDD +
Sbjct: 319 DVVDEIREVFSTRGRGELDELDDME 343
Score = 34.5 bits (77), Expect = 0.002
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 81 HLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 120
L TL L +N + R L + + L L L+ N S
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
Score = 32.5 bits (72), Expect = 0.010
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI----VAVSGASLAHLSNLTTLDLS 91
L + + ++ + L+ N I ++A +L + S
Sbjct: 9 SLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 92 HNFLRALTQDLITPLKSLQEL 112
F + ++ L+ L +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQA 88
Score = 32.5 bits (72), Expect = 0.011
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDD 116
L + +V A L ++ + LS N + + I K L+ D
Sbjct: 10 LKLDAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 117 NDI 119
Sbjct: 69 IFT 71
Score = 28.3 bits (61), Expect = 0.29
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 84 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS----MVTPDVIGDNVTITTLTLS 139
+L ++ +++ L+ S++E+ L N I + I + S
Sbjct: 9 SLKLDAITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 140 G 140
Sbjct: 68 D 68
Score = 24.8 bits (52), Expect = 5.0
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 5 CTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSL--SCHHNQIDVLED 52
++ L L + N+FS +D++ + + ++D L+D
Sbjct: 296 VIDEKMPDLLFLELNGNRFSEED----DVVDEIREVFSTRGRGELDELDD 341
Score = 24.1 bits (50), Expect = 7.6
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALA----GLDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
+ S+K + ++ N + L+ L ++D AL L
Sbjct: 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 86
Query: 63 HL 64
Sbjct: 87 QA 88
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 39.3 bits (90), Expect = 6e-05
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 34 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 93
+ ++C + L + + L L+ N + S A+L + LT L+L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 94 F 94
Sbjct: 66 E 66
Score = 38.5 bits (88), Expect = 9e-05
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 20 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 79
N+ ++ G L KL LS +N + L L L L L N + +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-KGF 191
Query: 80 AHLSNLTTLDLSHN 93
L L N
Sbjct: 192 FGSHLLPFAFLHGN 205
Score = 36.2 bits (82), Expect = 6e-04
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 81 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+++ ++ L AL DL K L L +N + + + +T L L
Sbjct: 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Score = 36.2 bits (82), Expect = 7e-04
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 83 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 117
+ T L LS N L + + P L +L LD
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Score = 35.8 bits (81), Expect = 8e-04
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 101
N++ L L L LA+N + + L L NL TL L N L + +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 102 LITPLKSLQELRLDDN 117
L L N
Sbjct: 191 FF-GSHLLPFAFLHGN 205
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 37.6 bits (86), Expect = 1e-04
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 54 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 113
+ LDL +I + A L +D S N +R L D L+ L+ L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 69
Query: 114 LDDNDISMVTPDVIGDNVTITTLTLS 139
+++N I + + +T L L+
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILT 95
Score = 34.5 bits (78), Expect = 0.002
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 94
+ L +I V+E + L +D + N I + G L L TL +++N
Sbjct: 19 RDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNR 74
Score = 33.8 bits (76), Expect = 0.003
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 77 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTP 124
A + LDL + + ++L L + DN+I +
Sbjct: 12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG 58
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 36.5 bits (83), Expect = 4e-04
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91
+ + L+ L +L L+ N I + +LA L NL L+L
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF 208
Score = 32.7 bits (73), Expect = 0.008
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 78 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 114
LA L+ L L LS N + L + LK+L L L
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207
Score = 32.7 bits (73), Expect = 0.009
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 33 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 92
+ + + + + L+++ + ++ I +V G + +L N+T L L+
Sbjct: 22 AFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 93 NFL 95
N L
Sbjct: 78 NKL 80
Score = 31.9 bits (71), Expect = 0.015
Identities = 8/65 (12%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
A + +L + + L+++ + +++ ++++ I L ++ +L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 117 NDISM 121
N ++
Sbjct: 78 NKLTD 82
Score = 28.4 bits (62), Expect = 0.23
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 31 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 71
L+ + + +++ I + + L ++ L L N++
Sbjct: 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 80
Score = 28.1 bits (61), Expect = 0.35
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 41
L+ L+ L ++ N S +R ALAGL L L
Sbjct: 177 LTKLQNLYLSKNHISDLR--ALAGLKNLDVLE 206
Score = 24.2 bits (51), Expect = 6.4
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 82 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ +L + L S+ ++ +++DI V I +T L L+G
Sbjct: 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Score = 24.2 bits (51), Expect = 6.5
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 103 ITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTLSG 140
+ L LQ L L N IS + + + L L
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 35.0 bits (79), Expect = 0.001
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 101
V + LS L+ L N+I +S LA L NL + L +N + ++
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP- 212
Query: 102 LITPLKSLQELRLDD 116
+ +L + L +
Sbjct: 213 -LANTSNLFIVTLTN 226
Score = 35.0 bits (79), Expect = 0.001
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 32 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91
L ++ + + + + L ++ L + + G + +L+NL L+L
Sbjct: 16 PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71
Query: 92 HNFL 95
N +
Sbjct: 72 DNQI 75
Score = 34.2 bits (77), Expect = 0.002
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
AL+ + + + + A L +TTL + + + L +L L L D
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 117 NDISM 121
N I+
Sbjct: 73 NQITD 77
Score = 30.4 bits (67), Expect = 0.057
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L++ ++ + + A LD +T+LS + +E + L+ L L+L N
Sbjct: 18 LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73
Query: 70 RI 71
+I
Sbjct: 74 QI 75
Score = 30.4 bits (67), Expect = 0.059
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 79 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMVTPDVIGDNVTITTLTL 138
LA+LS LTTL N + ++ + L +L E+ L +N IS V+P + + + +TL
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 139 S 139
+
Sbjct: 225 T 225
Score = 26.5 bits (57), Expect = 1.2
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 41
+ L +L + + +NQ S V LA L ++
Sbjct: 191 LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVT 223
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 34.0 bits (76), Expect = 0.003
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 3 IWCTVRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 62
L LK L++ NQ S V G+ L+ LTSL+ N + ++ L
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLR 152
Query: 63 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 96
L + + + ++ DL H+ +
Sbjct: 153 KKSLNGGAA---RCGAPSKVRDVQIKDLPHSEFK 183
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 32.7 bits (73), Expect = 0.008
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 32 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 91
L + + + S L ++ L I ++ G + +L+NLT ++ S
Sbjct: 15 TALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70
Query: 92 HNF 94
+N
Sbjct: 71 NNQ 73
Score = 31.9 bits (71), Expect = 0.016
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 88
+ + V + L+TL LD++ N++ +S LA L+NL +L
Sbjct: 155 LNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL 199
Score = 31.6 bits (70), Expect = 0.022
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 57 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 116
AL+ L + S L +TTL ++++ + L +L ++ +
Sbjct: 16 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 71
Query: 117 N 117
N
Sbjct: 72 N 72
Score = 31.2 bits (69), Expect = 0.026
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 78 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 112
LA+L+ L LD+S N + + ++ L +L+ L
Sbjct: 167 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199
Score = 27.3 bits (59), Expect = 0.50
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 7 VRRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSL 40
+ L++L+ L I+ N+ S + LA L L SL
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199
Score = 26.9 bits (58), Expect = 0.74
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 10 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 69
L+ + + + LD++T+L I ++ L+ L+ ++ ++N
Sbjct: 17 LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNN 72
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.2 bits (69), Expect = 0.026
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS--GASLAHLSNLTTLDLSHN 93
K T++ + I + E+ + ++L H I + A+L+ L L LS N
Sbjct: 3 KATTIK---DAIRIFEERKSVVATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTN 58
Query: 94 FLRALTQDLITPLKSLQEL 112
+ ++ ++ +++L+ L
Sbjct: 59 NIEKISS--LSGMENLRIL 75
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 30.1 bits (66), Expect = 0.070
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 42 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ 100
+ F L+ L HL L+ + L + L TL + Q
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 101 DLITPLKSLQELRLDDNDISMVTPDVIGDNVT 132
L ++L L+++ + + + IG+
Sbjct: 243 LLK---EALPHLQINCSHFTTIARPTIGNKKN 271
Score = 29.7 bits (65), Expect = 0.092
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 61 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDI 119
+ + + + + +DLS++ + T +++ LQ L L+ +
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 120 SMVTPDVIGDNVTITTL 136
S + + N + L
Sbjct: 84 SDPIVNTLAKNSNLVRL 100
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 57
Score = 23.4 bits (51), Expect = 4.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 126 VIGDNVTITTLTLSGE 141
++GD+VT+T L + G
Sbjct: 15 MVGDDVTVTVLGVKGN 30
>d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl
2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase
MshD {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 297
Score = 24.2 bits (51), Expect = 8.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 36 KLTSLSCHHNQIDVLEDHSFRALST 60
K+ +L+ H Q+ V ALS
Sbjct: 235 KVAALAAHATQVVVGPTGRAAALSN 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.369
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,931
Number of extensions: 18429
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 105
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)