BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8882
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y6X2|PIAS3_HUMAN E3 SUMO-protein ligase PIAS3 OS=Homo sapiens GN=PIAS3 PE=1 SV=2
Length = 628
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 15/137 (10%)
Query: 67 HPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGV 126
HP V K LPF+++ ELI ++L T +S R +E F F LT QQ ++ +RE++PG
Sbjct: 124 HPDVTMKPLPFYEVYGELIRPTTLAST-SSQRFEEAHFTFALTPQQVQQILTSREVLPGA 182
Query: 127 RNDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIPS 186
+ D+ Q VQLR T+ Q+D++PPNL +KVN + LP +P
Sbjct: 183 KCDYTIQ--------------VQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPP 228
Query: 187 RVQNKEPIRPSRLIEET 203
EP RPSR I T
Sbjct: 229 TKNGAEPKRPSRPINIT 245
>sp|O70260|PIAS3_RAT E3 SUMO-protein ligase PIAS3 OS=Rattus norvegicus GN=Pias3 PE=1
SV=2
Length = 628
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 84/167 (50%), Gaps = 21/167 (12%)
Query: 43 ASIPHYYMRPMANPAP-----LGPKLPD-RHPAVKFKVLPFFDMKHELIPISSLQPTNTS 96
ASIP + P P + P LP HP V K LPF+++ ELI ++L T +S
Sbjct: 94 ASIPPTLLTPGTLLGPKREVDMHPPLPQPVHPDVTMKPLPFYEVYGELIRPTTLAST-SS 152
Query: 97 SRNQEVSFQFKLTNQQAAELGENREIIPGVRNDWHYQRTHCAIFSLILYPQVQLRIASLN 156
R +E F F LT QQ ++ +RE++PG + D+ Q VQLR
Sbjct: 153 QRFEEAHFTFALTPQQLQQILTSREVLPGAKCDYTIQ--------------VQLRFCLCE 198
Query: 157 TTTEQDDHYPPNLAIKVNQRAVQLPNPIPSRVQNKEPIRPSRLIEET 203
T+ Q+D++PPNL +KVN + LP +P EP RPSR I T
Sbjct: 199 TSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKNGAEPKRPSRPINIT 245
>sp|O54714|PIAS3_MOUSE E3 SUMO-protein ligase PIAS3 OS=Mus musculus GN=Pias3 PE=1 SV=3
Length = 628
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 73/137 (53%), Gaps = 15/137 (10%)
Query: 67 HPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGV 126
HP V K LPF+++ ELI ++L T+ S R +E F F LT QQ ++ +RE++PG
Sbjct: 124 HPDVTMKPLPFYEVYGELIRPTTLASTS-SQRFEEAHFTFALTPQQLQQILTSREVLPGA 182
Query: 127 RNDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIPS 186
+ D+ Q VQLR T+ Q+D++PPNL +KVN + LP +P
Sbjct: 183 KCDYTIQ--------------VQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPP 228
Query: 187 RVQNKEPIRPSRLIEET 203
EP RPSR I T
Sbjct: 229 TKNGAEPKRPSRPINIT 245
>sp|O88907|PIAS1_MOUSE E3 SUMO-protein ligase PIAS1 OS=Mus musculus GN=Pias1 PE=1 SV=2
Length = 651
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 67 HPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGV 126
HP +K + LPF+D+ ELI +SL N S R +E F F LT QQ ++ + +I G
Sbjct: 133 HPDIKLQKLPFYDLLDELIKPTSLASDN-SQRFRETCFAFALTPQQVQQISSSMDI-SGT 190
Query: 127 RNDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIPS 186
+ D+ Q VQLR T+ Q+DH+PPNL +KVN + LP +P
Sbjct: 191 KCDFTVQ--------------VQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPP 236
Query: 187 RVQNKEPIRPSRLIEETN 204
EP RPSR I T+
Sbjct: 237 TKNGVEPKRPSRPINITS 254
>sp|O75925|PIAS1_HUMAN E3 SUMO-protein ligase PIAS1 OS=Homo sapiens GN=PIAS1 PE=1 SV=2
Length = 651
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 67 HPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGV 126
HP +K + LPF+D+ ELI +SL N S R +E F F LT QQ ++ + +I G
Sbjct: 133 HPDIKLQKLPFYDLLDELIKPTSLASDN-SQRFRETCFAFALTPQQVQQISSSMDI-SGT 190
Query: 127 RNDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIPS 186
+ D+ Q VQLR T+ Q+DH+PPNL +KVN + LP +P
Sbjct: 191 KCDFTVQ--------------VQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPP 236
Query: 187 RVQNKEPIRPSRLIEETN 204
EP RPSR I T+
Sbjct: 237 TKNGVEPKRPSRPINITS 254
>sp|Q8N2W9|PIAS4_HUMAN E3 SUMO-protein ligase PIAS4 OS=Homo sapiens GN=PIAS4 PE=1 SV=1
Length = 510
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 18/136 (13%)
Query: 68 PAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGVR 127
P V+ LPFF+M EL+ + L P N + + QE F LT +Q + +RE+ PGV+
Sbjct: 129 PEVRLVKLPFFNMLDELLKPTELVPQN-NEKLQESPCIFALTPRQVELIRNSRELQPGVK 187
Query: 128 NDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIPSR 187
A+ QV LRI +T+ Q+D YPPN+A+KVN +P PS
Sbjct: 188 ----------AV-------QVVLRICYSDTSCPQEDQYPPNIAVKVNHSYCSVPGYYPSN 230
Query: 188 VQNKEPIRPSRLIEET 203
EP RP R I T
Sbjct: 231 KPGVEPKRPCRPINLT 246
>sp|Q9JM05|PIAS4_MOUSE E3 SUMO-protein ligase PIAS4 OS=Mus musculus GN=Pias4 PE=1 SV=2
Length = 507
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 20/145 (13%)
Query: 62 KLPDR--HPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGEN 119
+LP + P V+ LPFF+M EL+ + L P ++ + QE F LT +Q + +
Sbjct: 114 RLPTKTLKPEVRLVKLPFFNMLDELLKPTELVP-QSAEKLQESPCIFALTPRQVEMIRNS 172
Query: 120 REIIPGVRNDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQ 179
RE+ PGV+ A+ QV LRI +T+ Q+D YPPN+A+KVN
Sbjct: 173 RELQPGVK----------AV-------QVVLRICYSDTSCPQEDQYPPNIAVKVNHSYCS 215
Query: 180 LPNPIPSRVQNKEPIRPSRLIEETN 204
+P PS EP RP R I T+
Sbjct: 216 VPGYYPSNKPGVEPKRPCRPINLTH 240
>sp|Q6AZ28|PIAS2_RAT E3 SUMO-protein ligase PIAS2 OS=Rattus norvegicus GN=Pias2 PE=1
SV=1
Length = 572
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 18/130 (13%)
Query: 70 VKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGVRND 129
V+ K LPF+D+ LI +SL ++ R QE F F LT QQ E+ +R+ +PG R D
Sbjct: 146 VQLKTLPFYDVLDVLIKPTSLVQSSIQ-RFQEKFFIFALTPQQVREICISRDFLPGGRRD 204
Query: 130 WHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIP---S 186
+ Q VQLR+ T+ Q+D+YP +L IKVN + LP P +
Sbjct: 205 YTVQ--------------VQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKN 250
Query: 187 RVQNKEPIRP 196
++ K P RP
Sbjct: 251 GIEQKRPGRP 260
>sp|O75928|PIAS2_HUMAN E3 SUMO-protein ligase PIAS2 OS=Homo sapiens GN=PIAS2 PE=1 SV=3
Length = 621
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 35/181 (19%)
Query: 36 NMYQAGGASIPHYYMRPMANPAPLGPKLP-DRHPA----------------VKFKVLPFF 78
++ AG S+P + P + +P+G L D P V+ K LPF+
Sbjct: 95 DLAVAGIHSLPSTSVTPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFY 154
Query: 79 DMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGVRNDWHYQRTHCA 138
D+ LI +SL ++ R QE F F LT QQ E+ +R+ +PG R D+ Q
Sbjct: 155 DVLDVLIKPTSLVQSSIQ-RFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQ----- 208
Query: 139 IFSLILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIP---SRVQNKEPIR 195
VQLR+ T+ Q+D+YP +L IKVN + LP P + ++ K P R
Sbjct: 209 ---------VQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGR 259
Query: 196 P 196
P
Sbjct: 260 P 260
>sp|Q8C5D8|PIAS2_MOUSE E3 SUMO-protein ligase PIAS2 OS=Mus musculus GN=Pias2 PE=1 SV=2
Length = 621
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 35/177 (19%)
Query: 40 AGGASIPHYYMRPMANPAPLGPKLP-DRHPA----------------VKFKVLPFFDMKH 82
AG S+P + P + +P+G L D P V+ K LPF+D+
Sbjct: 99 AGIHSLPSTSITPHSPSSPVGSVLLQDTKPTFEMQQPSPPIPPVHPDVQLKNLPFYDVLD 158
Query: 83 ELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGVRNDWHYQRTHCAIFSL 142
LI +SL ++ R QE F F LT QQ E+ +R+ +PG R D+ Q
Sbjct: 159 VLIKPTSLVQSSIQ-RFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQ--------- 208
Query: 143 ILYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIP---SRVQNKEPIRP 196
VQLR+ T+ Q+D+YP +L IKVN + LP P + ++ K P RP
Sbjct: 209 -----VQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRP 260
>sp|Q94361|GEI17_CAEEL E3 SUMO-protein ligase gei-17 OS=Caenorhabditis elegans GN=gei-17
PE=1 SV=4
Length = 780
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 75 LPFFDMKHELIPISSLQPTN--TSSRNQEVSFQFKLTNQQAAELGENREIIPGVRNDWHY 132
LPF+D+ L+ L ++ T + +++ F F LT + +++ ++ P R
Sbjct: 220 LPFYDVISVLLKPVELHSSDSPTLKQTKQLQFPFLLTAEHISKISYRADVTPLPRY---- 275
Query: 133 QRTHCAIFSLILYPQVQLRIASLNTTTE--QDDHYPPNLAIKVNQRAVQLPNPIPSRVQN 190
++QLR +L + Q D +P N +V+ VQLPN IP+ N
Sbjct: 276 --------------ELQLRFFNLTEPVQGPQKDDFPLNCYARVDDSVVQLPNVIPTNKTN 321
Query: 191 KEPIRPSRLIEETN 204
EP RPSR + T+
Sbjct: 322 AEPKRPSRPVNITS 335
>sp|Q6KZW2|DPO4_PICTO DNA polymerase IV OS=Picrophilus torridus (strain ATCC 700027 / DSM
9790 / JCM 10055 / NBRC 100828) GN=dbh PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 112 QAAELGENREIIPGVRNDWHYQRTHCAIFSLILYPQVQLRIASLNTTTEQDDHYPPNLAI 171
+A E+G+NR + +R D+ YQ+ I +I ++ IAS+ D+ Y + I
Sbjct: 62 RALEIGKNRAVFLPIRKDF-YQKYSDKIMDIISEYSEKMEIASI------DEAY---IDI 111
Query: 172 KVNQRAVQLPNPIPSRVQNKEPIRPS 197
N + + N I +R+ N+ I+ S
Sbjct: 112 DGNDCKIGIANEIKNRILNETGIKVS 137
>sp|Q06473|COX1_SYNY3 Cytochrome c oxidase subunit 1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=ctaD PE=3 SV=2
Length = 551
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 67 HPAVKFKVLPFFDMKHELIPISSLQP 92
HPAV +LPFF + E+IP+ + +P
Sbjct: 251 HPAVYIMILPFFGVISEVIPVHARKP 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,473,327
Number of Sequences: 539616
Number of extensions: 2911765
Number of successful extensions: 21790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 18772
Number of HSP's gapped (non-prelim): 2342
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)