Query psy8882
Match_columns 204
No_of_seqs 72 out of 74
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 21:48:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 3.6E-41 1.2E-45 305.7 9.6 126 64-204 12-137 (360)
2 3i2d_A E3 SUMO-protein ligase 99.1 3.8E-10 1.3E-14 103.2 9.2 116 56-204 52-173 (371)
3 2kpa_A ARNO(375-400); hydrolas 25.1 8.1 0.00028 23.2 -1.2 9 75-83 4-12 (26)
4 3s0r_A De novo designed helica 24.2 75 0.0026 19.3 3.0 18 12-29 11-28 (30)
5 1g43_A Scaffolding protein; be 18.2 1.2E+02 0.0042 23.9 4.0 32 147-178 113-155 (160)
6 4b9f_A Cellulosomal-scaffoldin 17.0 1.8E+02 0.006 22.8 4.6 32 147-178 108-150 (152)
7 2l8a_A Endoglucanase; carbohyd 15.5 1.9E+02 0.0066 22.5 4.5 32 147-178 101-143 (149)
8 3zuc_A Cellulosomal scaffoldin 14.3 2E+02 0.007 22.7 4.4 32 147-178 105-148 (153)
9 2cqj_A BRMS2, U3 small nucleol 13.9 71 0.0024 22.0 1.4 16 170-185 34-49 (71)
10 1jek_B ENV polyprotein; envelo 13.1 2E+02 0.0067 18.3 3.2 19 7-25 16-34 (36)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=3.6e-41 Score=305.74 Aligned_cols=126 Identities=37% Similarity=0.519 Sum_probs=109.5
Q ss_pred CCCCCCceeeecCCccccccccccceeccCCCCCCcceeeeEEEeCHHHHHHHhhcCccCCCccccceeeccccceeccc
Q psy8882 64 PDRHPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGVRNDWHYQRTHCAIFSLI 143 (204)
Q Consensus 64 p~~~P~VrfK~LPFYdvldeLLkPT~L~~s~~~~r~qe~~f~F~LTpqQv~~I~~srd~~pg~k~e~~v~rt~~~~~~~~ 143 (204)
.++||+|+||+|||||++++||+||+|++++ ++++||+.|+|+||++|+.+|+++||..||+|+||.+
T Consensus 12 ~~~~~~~~~k~lPFy~v~~~l~~Pt~L~~~~-~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~v----------- 79 (360)
T 4fo9_A 12 ENLYFQGQLKNLPFYDVLDVLIKPTSLVQSS-IQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTV----------- 79 (360)
T ss_dssp -----CCCBCCCTTEEEEEEEEEEEECCCCS-SCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESE-----------
T ss_pred cccCCCceecCCCchHhHhhhcCceeccccc-CcccccceeEEEcCHHHHHHHhhccccccccccceeE-----------
Confidence 3899999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred cCCeEEEEeeecCCCCCCccCCCCccEEEECCeeecCCCCCCCCCCCCCCCCCCCCccCCC
Q psy8882 144 LYPQVQLRIASLNTTTEQDDHYPPNLAIKVNQRAVQLPNPIPSRVQNKEPIRPSRLIEETN 204 (204)
Q Consensus 144 ~~~QVQLRfc~~etsceQ~D~fPpnl~VKVN~k~c~LP~~iP~~k~g~EpkRP~RPINIT~ 204 (204)
|||||||++|++|+|+|+||++++|||||+.|.+|+++|++|+|+|+||++||||||+
T Consensus 80 ---qvqlRfC~~~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~ 137 (360)
T 4fo9_A 80 ---QVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITS 137 (360)
T ss_dssp ---EEEEEEEEC-C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGG
T ss_pred ---EEEEEEEEccCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechh
Confidence 9999999999999999999999999999999999999999999999999999999995
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.8e-10 Score=103.16 Aligned_cols=116 Identities=13% Similarity=0.198 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCCCceeeecCCccccccccccceeccCCCCCCcceeeeEEEeCHHHHHHHhhcCccCCCccccceeecc
Q psy8882 56 PAPLGPKLPDRHPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPGVRNDWHYQRT 135 (204)
Q Consensus 56 ~~~~~p~~p~~~P~VrfK~LPFYdvldeLLkPT~L~~s~~~~r~qe~~f~F~LTpqQv~~I~~srd~~pg~k~e~~v~rt 135 (204)
|-+++...++..+.+.||+.|||+.+..|-....+.... +......+.|.||.++.+.+..+ +..+
T Consensus 52 ~~~~~~~~~~~~~~l~Fk~SPFY~i~~~i~~~~~~~~~~--~~R~~~~~~F~Ls~~~~~~L~~~---------~~~~--- 117 (371)
T 3i2d_A 52 PDASSSSSSFAVPTIHFKESPFYKIQRLIPELVMNVEVT--GGRGMCSAKFKLSKADYNLLSNP---------NSKH--- 117 (371)
T ss_dssp CSSCCSTTSSSSCCCCBCCBTTEEEEEEEEEEEEEECCE--EEEEEEEEEECCCHHHHHHHHST---------TCCE---
T ss_pred CccccccCCCCCCceeecCCCCceeeeecCCcccccccc--CCCCEEEEEEEECHHHHHHHhcC---------CCCc---
Confidence 333333345777889999999999999988776666544 23345688999999999888642 1123
Q ss_pred ccceeccccCCeEEEEeeecCC----CCCCccCCCCccEEEECCeeec--CCCCCCCCCCCCCCCCCCCCccCCC
Q psy8882 136 HCAIFSLILYPQVQLRIASLNT----TTEQDDHYPPNLAIKVNQRAVQ--LPNPIPSRVQNKEPIRPSRLIEETN 204 (204)
Q Consensus 136 ~~~~~~~~~~~QVQLRfc~~et----sceQ~D~fPpnl~VKVN~k~c~--LP~~iP~~k~g~EpkRP~RPINIT~ 204 (204)
+|+| ||.... ...++..||..++|+|||+.+. +.|. .+|+|. .+|||||+
T Consensus 118 -----------rl~L-~C~~~~~~~~~~~~~i~fP~~~eI~VNg~~vk~n~rGl--Knk~Gt-----~~PvDIT~ 173 (371)
T 3i2d_A 118 -----------RLYL-FSGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIRGF--KSKPGT-----AKPADLTP 173 (371)
T ss_dssp -----------EEEE-EEEESSCSSCGGGBCCCCCSSEEEEETTEECCSCCSSC--TTSCGG-----GSCEECGG
T ss_pred -----------eEEE-EeeecCCCCCCCCcCeecCCceEEEECCEEeccccccC--CCCCCC-----cCCCCchh
Confidence 4565 576432 3578899999999999999996 4444 566775 58999995
No 3
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=25.10 E-value=8.1 Score=23.23 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=6.7
Q ss_pred cCCcccccc
Q psy8882 75 LPFFDMKHE 83 (204)
Q Consensus 75 LPFYdvlde 83 (204)
=||||++..
T Consensus 4 dPFYdml~~ 12 (26)
T 2kpa_A 4 DPFYEMLAA 12 (26)
T ss_dssp HHHHHHHTC
T ss_pred chHHHHHHH
Confidence 389998764
No 4
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=24.24 E-value=75 Score=19.34 Aligned_cols=18 Identities=50% Similarity=0.446 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8882 12 QQQQKQAQMAQQAAVLSL 29 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (204)
||.-..||+|-|||..+|
T Consensus 11 qqalekaqlalqaarqal 28 (30)
T 3s0r_A 11 QQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 556677888888887765
No 5
>1g43_A Scaffolding protein; beta-sandwich, structural protein; 2.20A {Clostridium cellulolyticum} SCOP: b.2.2.2
Probab=18.21 E-value=1.2e+02 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=23.5
Q ss_pred eEEEEeeecC-CCCCCccCCC----------CccEEEECCeee
Q psy8882 147 QVQLRIASLN-TTTEQDDHYP----------PNLAIKVNQRAV 178 (204)
Q Consensus 147 QVQLRfc~~e-tsceQ~D~fP----------pnl~VKVN~k~c 178 (204)
+||+||...+ ..-.|.++|- .++.|-+||+.+
T Consensus 113 eiq~ri~~~dws~~dqsNDySf~~~~~~~~~~kItvY~~G~lv 155 (160)
T 1g43_A 113 EIQTRFARNDWSNFDQSNDWSYTAAGSYMDWQKISAFVGGTLA 155 (160)
T ss_dssp EEEEEEEETTCCCEEGGGCTTCCCCSSCBCCTTSEEEETTEEE
T ss_pred EEEEEEecCCCCcccccCCcccCCccccccCCeEEEEECCEEE
Confidence 8999998766 4566777665 457777788765
No 6
>4b9f_A Cellulosomal-scaffolding protein A; sugar binding protein, cellulosome; 1.19A {Clostridium thermocellum atcc 27405} PDB: 1nbc_A
Probab=16.99 E-value=1.8e+02 Score=22.82 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEeeecCCC-CCCccCCCCc----------cEEEECCeee
Q psy8882 147 QVQLRIASLNTT-TEQDDHYPPN----------LAIKVNQRAV 178 (204)
Q Consensus 147 QVQLRfc~~ets-ceQ~D~fPpn----------l~VKVN~k~c 178 (204)
+||+||...+-+ -.|.++|--+ +.|-+||+.+
T Consensus 108 eiQ~ri~~~~~s~~d~snDyS~~~~~~~~~~~~it~Y~~g~lv 150 (152)
T 4b9f_A 108 QIQGRFAKNDWSNYTQSNDYSFKSASQFVEWDQVTAYLNGVLV 150 (152)
T ss_dssp EEEEEEEETTCCCEESTTCTTCCBCSSCEECTTSEEEETTEEE
T ss_pred EEEEEEECCCCcceeEcCCcCccCcCcccccceEEEEECCEEe
Confidence 799999877643 4666666553 5566666553
No 7
>2l8a_A Endoglucanase; carbohydrate-binding module, family 3, hydrolase; NMR {Bacillus subtilis}
Probab=15.51 E-value=1.9e+02 Score=22.47 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=23.2
Q ss_pred eEEEEeeecCCC-CCCccCCC----------CccEEEECCeee
Q psy8882 147 QVQLRIASLNTT-TEQDDHYP----------PNLAIKVNQRAV 178 (204)
Q Consensus 147 QVQLRfc~~ets-ceQ~D~fP----------pnl~VKVN~k~c 178 (204)
+||+||...+-+ -.|.++|- .++.|-+||+.+
T Consensus 101 eiq~ri~~~dws~~dqsNDyS~~~~~~~~~~~~ItvY~~G~lv 143 (149)
T 2l8a_A 101 NIQLRLHNDDWSNYAQSGDYSFFKSNTFKTTKKITLYDQGKLI 143 (149)
T ss_dssp CEEEEEECCTTSCCCTTTTTTTTCCSSCCCSCCSEEEETTEEE
T ss_pred EEEEEEEcCCCCccccCCCcccCCccccccCceEEEEECCEEE
Confidence 799999876543 56777665 357788888775
No 8
>3zuc_A Cellulosomal scaffoldin; crystalline cellulose-binding protein, sugar binding protein cellulosome; HET: EDO 1PE; 1.00A {Acetivibrio cellulolyticus} SCOP: b.2.2.0 PDB: 3zu8_A* 3zqw_A*
Probab=14.28 E-value=2e+02 Score=22.74 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=23.1
Q ss_pred eEEEEeeecCC-CCCCccCCCCc-----------cEEEECCeee
Q psy8882 147 QVQLRIASLNT-TTEQDDHYPPN-----------LAIKVNQRAV 178 (204)
Q Consensus 147 QVQLRfc~~et-sceQ~D~fPpn-----------l~VKVN~k~c 178 (204)
+||+||...+. .-.|.++|=-+ +.|-+||+.+
T Consensus 105 eiq~Ri~~~dws~~dqsnDySf~~~~~~~~~~~kIt~Y~~g~lv 148 (153)
T 3zuc_A 105 EVQGRFAKSDWTNYNQADDYSFNSSATTYTSWDKVTAYSAEGLI 148 (153)
T ss_dssp EEEEEEEETTCCCEEGGGCTTCCSSCSSCEECTTSEEEETTEEE
T ss_pred EEEEEEEcCCCcccccccCcccccccCCcccCceEEEEECCEEE
Confidence 79999988764 34677776543 7788888765
No 9
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.90 E-value=71 Score=21.96 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.5
Q ss_pred EEEECCeeecCCCCCC
Q psy8882 170 AIKVNQRAVQLPNPIP 185 (204)
Q Consensus 170 ~VKVN~k~c~LP~~iP 185 (204)
.|+|||+.+..|++.=
T Consensus 34 ~V~Vng~~v~kps~~V 49 (71)
T 2cqj_A 34 HVRVGPDVVTDPAFLV 49 (71)
T ss_dssp CEEETTBCCCCTTCEE
T ss_pred cEEECCEEECCCCCCC
Confidence 5899999999998743
No 10
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=13.06 E-value=2e+02 Score=18.26 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy8882 7 YSQRLQQQQKQAQMAQQAA 25 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (204)
++.-|++.|.|.++|+..|
T Consensus 16 Iy~LLeeAq~Qq~~a~~~~ 34 (36)
T 1jek_B 16 LSLLLREAALQVHIAQRDA 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHc
Done!