Query psy8882
Match_columns 204
No_of_seqs 72 out of 74
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 21:48:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8882.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8882hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kska3 d.66.1.5 (A:1-59) Pseu 19.8 25 0.0018 21.6 1.9 15 170-184 26-40 (59)
2 d1vioa2 d.66.1.5 (A:0-57) Pseu 19.1 27 0.002 21.4 1.9 14 170-183 27-40 (58)
3 d1v6ga2 g.39.1.3 (A:42-81) Act 18.0 21 0.0016 21.8 1.2 17 163-179 8-24 (40)
4 d1c06a_ d.66.1.2 (A:) Ribosoma 16.4 29 0.0021 26.0 1.9 20 167-186 74-93 (159)
5 d1v5va1 b.44.2.1 (A:313-401) G 12.4 28 0.002 23.0 0.6 13 69-81 69-81 (89)
6 d1wosa1 b.44.2.1 (A:279-361) G 12.1 29 0.0021 22.2 0.6 13 68-80 68-80 (83)
7 d2fkia1 d.198.3.1 (A:1-118) Hy 12.0 79 0.0057 21.6 3.1 22 108-132 1-22 (118)
8 d1vloa1 b.44.2.1 (A:278-367) G 10.2 35 0.0026 22.3 0.6 12 69-80 71-82 (90)
9 d1pj5a1 b.44.2.1 (A:743-830) N 9.8 49 0.0036 21.6 1.2 17 70-86 71-87 (88)
10 d2gy9d1 d.66.1.2 (D:2-205) Rib 9.5 49 0.0036 25.7 1.3 26 161-186 111-136 (204)
No 1
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.81 E-value=25 Score=21.56 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=13.0
Q ss_pred EEEECCeeecCCCCC
Q psy8882 170 AIKVNQRAVQLPNPI 184 (204)
Q Consensus 170 ~VKVN~k~c~LP~~i 184 (204)
.|+|||+.|.-|++-
T Consensus 26 ~V~Vng~~v~~~~~~ 40 (59)
T d1kska3 26 RVTVDGEIVRNAAFK 40 (59)
T ss_dssp CEEETTEECCCTTCE
T ss_pred cEEECCEEeecCCcC
Confidence 489999999999873
No 2
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=19.07 E-value=27 Score=21.41 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.3
Q ss_pred EEEECCeeecCCCC
Q psy8882 170 AIKVNQRAVQLPNP 183 (204)
Q Consensus 170 ~VKVN~k~c~LP~~ 183 (204)
.|+|||+.|.-|++
T Consensus 27 ~V~Vng~~v~~~~~ 40 (58)
T d1vioa2 27 AVKINGEIVKSGSV 40 (58)
T ss_dssp CEEETTEECCCTTC
T ss_pred eEEECCEEeCCCCC
Confidence 58999999998876
No 3
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.99 E-value=21 Score=21.77 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=15.1
Q ss_pred cCCCCccEEEECCeeec
Q psy8882 163 DHYPPNLAIKVNQRAVQ 179 (204)
Q Consensus 163 D~fPpnl~VKVN~k~c~ 179 (204)
.-||++=.|..|||.|-
T Consensus 8 ~pFP~GDRVTFnGKeC~ 24 (40)
T d1v6ga2 8 LPFPPGDRVTFNGKECM 24 (40)
T ss_dssp CCCCSSSCEEEETTEEE
T ss_pred CCCCCCCeEEEcCceee
Confidence 46999999999999875
No 4
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.40 E-value=29 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.1
Q ss_pred CccEEEECCeeecCCCCCCC
Q psy8882 167 PNLAIKVNQRAVQLPNPIPS 186 (204)
Q Consensus 167 pnl~VKVN~k~c~LP~~iP~ 186 (204)
.+=.|.||||.|.+|+|.=.
T Consensus 74 ~Hghi~vNgk~v~iPSy~vk 93 (159)
T d1c06a_ 74 THGHILVDGSRVNIPSYRVK 93 (159)
T ss_dssp HTSCEEETTEECCCSSCCCC
T ss_pred HhcceEccceEEEecceeec
Confidence 34468999999999999644
No 5
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.42 E-value=28 Score=23.00 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.2
Q ss_pred CceeeecCCcccc
Q psy8882 69 AVKFKVLPFFDMK 81 (204)
Q Consensus 69 ~VrfK~LPFYdvl 81 (204)
+.+...+||||--
T Consensus 69 ~a~v~~~PfyDp~ 81 (89)
T d1v5va1 69 KAVTVTPPFYDPK 81 (89)
T ss_dssp EEEEECSCSSCTT
T ss_pred EEEEECCCCcCCc
Confidence 4678889999864
No 6
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=12.09 E-value=29 Score=22.23 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=10.2
Q ss_pred CCceeeecCCccc
Q psy8882 68 PAVKFKVLPFFDM 80 (204)
Q Consensus 68 P~VrfK~LPFYdv 80 (204)
-+.+...+|||+-
T Consensus 68 ~~a~v~~~PF~~~ 80 (83)
T d1wosa1 68 VEALVVKKPFYRG 80 (83)
T ss_dssp EEEEEECSCSCCC
T ss_pred EEEEEECCCCcCC
Confidence 3578899999973
No 7
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia coli [TaxId: 562]}
Probab=12.03 E-value=79 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=16.6
Q ss_pred eCHHHHHHHhhcCccCCCcccccee
Q psy8882 108 LTNQQAAELGENREIIPGVRNDWHY 132 (204)
Q Consensus 108 LTpqQv~~I~~srd~~pg~k~e~~v 132 (204)
+|.+++.++|.+ .||+..+|..
T Consensus 1 Mt~~el~~~cls---lpga~e~~p~ 22 (118)
T d2fkia1 1 MTISELLQYCMA---KPGAEQSVHN 22 (118)
T ss_dssp CCHHHHHHHHTT---STTCEEEEET
T ss_pred CCHHHHHHHHHh---CCCCEeeCCC
Confidence 478899999987 4887766554
No 8
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=10.20 E-value=35 Score=22.35 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=9.7
Q ss_pred CceeeecCCccc
Q psy8882 69 AVKFKVLPFFDM 80 (204)
Q Consensus 69 ~VrfK~LPFYdv 80 (204)
+.+..++||||-
T Consensus 71 ~a~v~~~PF~~~ 82 (90)
T d1vloa1 71 PVKVTKPVFVRN 82 (90)
T ss_dssp EEEEECSCCEET
T ss_pred EEEEECCCcccC
Confidence 467889999985
No 9
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=9.80 E-value=49 Score=21.62 Aligned_cols=17 Identities=18% Similarity=0.256 Sum_probs=12.6
Q ss_pred ceeeecCCccccccccc
Q psy8882 70 VKFKVLPFFDMKHELIP 86 (204)
Q Consensus 70 VrfK~LPFYdvldeLLk 86 (204)
.+..++||||--.+.+|
T Consensus 71 a~v~~~P~yDP~~~r~r 87 (88)
T d1pj5a1 71 ATVTEDPLYDPKMTRLR 87 (88)
T ss_dssp EEEECSCSSCTTCTTTC
T ss_pred EEEEccCCCCCCCcccC
Confidence 56788999998665543
No 10
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=9.54 E-value=49 Score=25.70 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=18.2
Q ss_pred CccCCCCccEEEECCeeecCCCCCCC
Q psy8882 161 QDDHYPPNLAIKVNQRAVQLPNPIPS 186 (204)
Q Consensus 161 Q~D~fPpnl~VKVN~k~c~LP~~iP~ 186 (204)
|.-.+=.+=.|.||||.|.+|++.=.
T Consensus 111 ~ARQ~v~Hghi~VNgk~VnIPSy~vk 136 (204)
T d2gy9d1 111 EARQLVSHKAIMVNGRVVNIASYQVS 136 (204)
T ss_dssp HHHHHHHTTCEEESSSBCCCTTCBCC
T ss_pred HHHHHHHhcceecCCEEEEeccEeec
Confidence 33333344569999999999998543
Done!