RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8882
         (204 letters)



>gnl|CDD|222681 pfam14324, PINIT, PINIT domain.  The PINIT domain is a protein
           domain that is found in PIAS proteins. The PINIT domain
           is about 180 amino acids in length.
          Length = 144

 Score = 73.0 bits (180), Expect = 9e-17
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 28/124 (22%)

Query: 66  RHPAVKFKVLPFFDMKHELIPISSLQPTNTSSRNQEVSFQFKLTNQQAAELGENREIIPG 125
            HP V+FK  PF+D+  ELI  + L P ++S R QEV F F LT +Q ++L         
Sbjct: 2   VHPDVRFKPSPFYDVL-ELIHPTPLVPPSSSGR-QEVRFSFILTPEQVSQL--------- 50

Query: 126 VRNDWHYQRTHCAIFSLILYPQVQLRIA---SLNTTTEQDDHYPPNLAIKVNQRAVQLPN 182
            +N    + T           QV L       L+T+ EQD  +PP + +KVN + V+   
Sbjct: 51  -KNS---RPTV----------QVYLFCGAFCLLDTSCEQDIEFPPQIEVKVNGKQVKANL 96

Query: 183 PIPS 186
               
Sbjct: 97  RGLK 100


>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
           [Transcription / DNA replication, recombination, and
           repair / Chromatin structure and dynamics].
          Length = 508

 Score = 32.3 bits (73), Expect = 0.16
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 85  IPISSLQPTNTSSRNQEVSFQFKLTNQQ----AAELGENREIIPGV 126
           IP+  ++ TN   +N EVS +F++ +++      EL E R   PGV
Sbjct: 128 IPVDDIENTNLDIKN-EVSVEFRIQDEEYQPAGDELVEMRFYSPGV 172


>gnl|CDD|148644 pfam07154, DUF1392, Protein of unknown function (DUF1392).  This
           family consists of several hypothetical cyanobacterial
           proteins of around 150 residues in length which seem to
           be specific to Anabaena species. The function of this
           family is unknown.
          Length = 150

 Score = 28.2 bits (63), Expect = 1.9
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 81  KHELIPISSLQPTNTSSRN----QEVSFQFKLTNQQAAELGENREIIPGV---RNDWHYQ 133
           KH++I     QPT  S         V  +F       A  G  + +I GV    N W Y 
Sbjct: 69  KHQIIATGQFQPTTLSKPAFALGDRVLLRF-------ASHGPKQRLILGVSLVNNSWLYA 121


>gnl|CDD|216351 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2
          protein in is required for acetate in Saccharomyces
          cerevisiae, and is probably an acetate transporter. A
          homologue in Yarrowia lipolytica (GPR1) has a role in
          acetic acid sensitivity.
          Length = 210

 Score = 28.0 bits (63), Expect = 2.8
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 3/26 (11%)

Query: 35 GNMYQAGGASIPHYYMRPMANPAPLG 60
          G     G A  P       ANPAPLG
Sbjct: 2  GGTLNPGLAPYPK---HKFANPAPLG 24


>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
           TolA; Provisional.
          Length = 387

 Score = 28.2 bits (63), Expect = 3.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 9   QRLQQQQKQAQMAQQAAVLSLQQQN 33
           +RL  Q+++ Q  + A   +L+Q+ 
Sbjct: 109 ERLAAQEQKKQAEEAAKQAALKQKQ 133


>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
          Length = 428

 Score = 27.4 bits (61), Expect = 6.3
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 9   QRLQQQQKQAQMAQQAAVLSLQQQNHGNMYQAGGA 43
           Q+ + ++KQ+Q   Q  +L  QQ     + QA   
Sbjct: 185 QKAELEEKQSQ---QKTLLYEQQAQQQKLEQARNE 216


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,033,328
Number of extensions: 882443
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1175
Number of HSP's successfully gapped: 48
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)