RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8882
         (204 letters)



>d1hf2a1 b.80.3.1 (A:100-206) Cell-division inhibitor MinC,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 107

 Score = 25.8 bits (57), Expect = 2.2
 Identities = 6/28 (21%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 139 IFSLILYPQVQLRIASLNTTTEQDDHYP 166
           + +L L     ++IA   T ++ +++ P
Sbjct: 61  VAALDLQTS-LIQIAGFITHSKGEENVP 87


>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane
          translocase subunit Tim9 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 73

 Score = 24.0 bits (52), Expect = 4.9
 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 1  MSHQPYYSQRLQQQQKQA--QMAQQAAVL 27
          +      S R Q+   Q    +A +A +L
Sbjct: 45 LKMTQRISMRFQEYHIQQNEALAAKAGLL 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 711,036
Number of extensions: 29377
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 6
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)