Query psy8885
Match_columns 148
No_of_seqs 128 out of 227
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 21:52:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dp4_A Atrial natriuretic pept 99.6 6.8E-16 2.3E-20 127.6 8.7 109 6-114 290-434 (435)
2 1jdp_A NPR-C, atrial natriuret 98.7 8.3E-08 2.8E-12 79.8 8.8 87 5-94 288-394 (441)
3 4gpa_A Glutamate receptor 4; P 98.5 5.6E-07 1.9E-11 72.1 9.4 50 27-76 270-336 (389)
4 4f11_A Gamma-aminobutyric acid 98.3 5.3E-07 1.8E-11 74.6 6.0 76 29-104 309-428 (433)
5 3saj_A Glutamate receptor 1; r 98.1 9.1E-06 3.1E-10 66.5 7.3 48 29-76 271-335 (384)
6 3o21_A Glutamate receptor 3; p 97.9 2.1E-05 7.1E-10 65.1 7.0 48 29-76 274-338 (389)
7 3kg2_A Glutamate receptor 2; I 97.9 2.4E-05 8.1E-10 69.8 7.3 66 28-93 267-366 (823)
8 3hsy_A Glutamate receptor 2; l 97.9 1.4E-05 4.9E-10 65.3 5.4 48 29-76 268-332 (376)
9 3h6g_A Glutamate receptor, ion 97.7 4.7E-05 1.6E-09 62.1 5.9 76 6-81 258-348 (395)
10 3om0_A Glutamate receptor, ion 97.5 0.00037 1.3E-08 56.9 8.6 48 29-76 280-339 (393)
11 3i09_A Periplasmic branched-ch 97.3 0.00086 3E-08 53.9 7.7 74 29-107 275-373 (375)
12 3n0w_A ABC branched chain amin 97.0 0.0013 4.4E-08 53.1 6.0 74 29-107 278-377 (379)
13 2e4u_A Metabotropic glutamate 96.8 0.0012 4.3E-08 57.1 5.2 45 30-74 362-417 (555)
14 3h5l_A Putative branched-chain 96.7 0.00082 2.8E-08 55.1 3.3 46 31-76 302-349 (419)
15 4evq_A Putative ABC transporte 96.7 0.005 1.7E-07 49.0 7.3 45 29-76 285-329 (375)
16 3td9_A Branched chain amino ac 96.3 0.0093 3.2E-07 47.5 6.8 42 30-76 286-328 (366)
17 3mq4_A Mglur7, metabotropic gl 96.2 0.0095 3.3E-07 50.7 6.6 45 32-76 374-428 (481)
18 3snr_A Extracellular ligand-bi 95.9 0.0097 3.3E-07 46.7 4.9 54 29-82 279-338 (362)
19 3qek_A NMDA glutamate receptor 95.8 0.014 4.7E-07 47.3 5.8 45 32-76 276-334 (384)
20 3sg0_A Extracellular ligand-bi 95.8 0.011 3.9E-07 46.8 5.1 53 29-81 303-361 (386)
21 3qel_B Glutamate [NMDA] recept 95.6 0.016 5.4E-07 47.9 5.3 45 32-76 258-317 (364)
22 4eyg_A Twin-arginine transloca 95.5 0.02 7E-07 45.3 5.6 44 29-76 277-320 (368)
23 3n0x_A Possible substrate bind 94.9 0.066 2.2E-06 43.1 6.8 49 29-82 280-331 (374)
24 3ipc_A ABC transporter, substr 94.5 0.047 1.6E-06 43.1 5.1 42 30-76 272-313 (356)
25 3i45_A Twin-arginine transloca 94.5 0.076 2.6E-06 42.7 6.3 42 30-76 282-323 (387)
26 3hut_A Putative branched-chain 94.3 0.079 2.7E-06 41.8 6.0 49 29-82 274-327 (358)
27 1usg_A Leucine-specific bindin 94.1 0.044 1.5E-06 42.8 4.0 43 29-76 272-314 (346)
28 3eaf_A ABC transporter, substr 93.9 0.016 5.6E-07 46.8 1.1 47 30-76 286-334 (391)
29 4f06_A Extracellular ligand-bi 93.2 0.13 4.5E-06 41.5 5.4 51 29-83 280-333 (371)
30 1pea_A Amidase operon; gene re 92.4 0.18 6.1E-06 40.6 5.2 43 29-76 281-323 (385)
31 3sm9_A Mglur3, metabotropic gl 92.3 0.079 2.7E-06 45.2 3.2 43 33-75 364-417 (479)
32 3lop_A Substrate binding perip 91.4 0.3 1E-05 38.7 5.4 44 29-76 281-326 (364)
33 3ks9_A Mglur1, metabotropic gl 90.0 0.3 1E-05 41.8 4.5 42 35-76 384-435 (496)
34 3lkb_A Probable branched-chain 88.9 0.55 1.9E-05 37.6 5.0 43 31-74 284-330 (392)
35 2lw9_A Unconventionnal myosin- 87.8 0.4 1.4E-05 30.6 2.8 22 122-143 8-29 (51)
36 4gnr_A ABC transporter substra 87.6 0.59 2E-05 36.8 4.4 46 29-81 278-327 (353)
37 2c7n_A Rabex-5, GEF 1, RAB gua 40.6 32 0.0011 23.3 3.7 24 97-120 15-43 (74)
38 3q8j_A Asteropsin A, ABU8-1; c 31.8 7.9 0.00027 22.7 -0.4 12 104-115 2-13 (37)
39 2kzy_A ZNF216-A20, zfand5 prot 27.1 54 0.0019 21.4 3.0 22 97-118 12-38 (62)
40 1ju8_A Leginsulin, albumin 1; 26.0 20 0.00069 21.3 0.7 13 98-112 8-20 (37)
41 1p8b_A PEA albumin 1, subunit 25.8 20 0.00068 21.3 0.6 13 98-112 8-20 (37)
42 2akf_A Coronin-1A; coiled coil 21.3 87 0.003 17.8 2.7 12 124-135 3-14 (32)
43 3ckm_A YRAM (HI1655), LPOA; pe 20.2 88 0.003 24.2 3.6 38 30-82 259-299 (327)
No 1
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.63 E-value=6.8e-16 Score=127.65 Aligned_cols=109 Identities=33% Similarity=0.457 Sum_probs=79.8
Q ss_pred chhHHHHHHHHhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---------
Q psy8885 6 NGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP--------- 76 (148)
Q Consensus 6 ~~~F~~eVk~~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv--------- 76 (148)
...|.++.+.....+|+|+.+...++.++++.||||+++|+||++++..+++..+|.+|.+.|++.+|.|+
T Consensus 290 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~ 369 (435)
T 1dp4_A 290 YLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN 369 (435)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCC
Confidence 34566666444445677876555688899999999999999999999887766799999999999999987
Q ss_pred ------cc---ccCCCCCcEEEEEeeec----------------CCCCCCCCCceecCC--CchH
Q psy8885 77 ------KS---ILPTTTPLRLVHKYILY----------------YVIPLCNHKCTIANS--ILSQ 114 (148)
Q Consensus 77 ------ys---LD~~~g~f~vV~~Y~g~----------------g~~PLd~P~CGF~G~--~C~~ 114 (148)
|. ++..+|.+++|+.|+.. +.+|.|.|+|||+|+ .|+.
T Consensus 370 g~~~~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~~~~~~i~W~~~~~P~~~p~Cgf~~~~~~C~~ 434 (435)
T 1dp4_A 370 GDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPKCGFDNEDPACNQ 434 (435)
T ss_dssp SBBCCCEEEEEECTTTCCEEEEEEECTTTCCEEESTTCCCCCTTSSCCCSSCTTCC---------
T ss_pred CCccceeEEEEecCCCCcEEEEEEecCCCceEEEcCCceeeCCCCCCCCCCCCCCcCCCcCCCCC
Confidence 22 12245678999988631 479999999999999 9974
No 2
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.65 E-value=8.3e-08 Score=79.79 Aligned_cols=87 Identities=32% Similarity=0.517 Sum_probs=63.7
Q ss_pred cchhHHHHHHH-HhcCCCCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc-------
Q psy8885 5 GNGYVRLMVKK-VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP------- 76 (148)
Q Consensus 5 ~~~~F~~eVk~-~a~~pFn~t~~~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv------- 76 (148)
++..|.+.++. ....+|+ ....++.|+++.||||+++|+||++++..|.+..+|.+|.+.|++.+|.|+
T Consensus 288 ~~~~F~~~~~~~~~~~~~~---~~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd 364 (441)
T 1jdp_A 288 EFEKFSMEVKSSVEKQGLN---MEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSID 364 (441)
T ss_dssp HHHHHHHHHHHHHHTTTCC---CCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEEC
T ss_pred hHHHHHHHHHHHHhhCCCC---ccchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEEC
Confidence 45667777733 3333354 112357799999999999999999999877656799999999999999987
Q ss_pred --------ccc-c---CCCCCcEEEEEeee
Q psy8885 77 --------KSI-L---PTTTPLRLVHKYIL 94 (148)
Q Consensus 77 --------ysL-D---~~~g~f~vV~~Y~g 94 (148)
|.+ + ..+|.++.|+.|+.
T Consensus 365 ~~Gd~~~~~~I~~~~~~~~g~~~~VG~~~~ 394 (441)
T 1jdp_A 365 ANGDRYGDFSVIAMTDVEAGTQEVIGDYFG 394 (441)
T ss_dssp TTSBBCCEEEEEEEEETTTTEEEEEEEEET
T ss_pred CCCCccccEEEEecccCCCCceEEEEEEcC
Confidence 221 1 23456888999884
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.50 E-value=5.6e-07 Score=72.12 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=44.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHcCCCC-----------------CChHHHHHHhhcCccccc
Q psy8885 27 NESVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 27 ~~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-----------------~nGt~I~~~m~nrtF~Gv 76 (148)
...++.|+++.||||+++|+||+++++.+.+. .+|..|.+.|++.+|.|+
T Consensus 270 ~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~ 336 (389)
T 4gpa_A 270 ETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGL 336 (389)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEET
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecC
Confidence 45789999999999999999999999886532 378999999999999998
No 4
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.35 E-value=5.3e-07 Score=74.55 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=58.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc---CCCC-----------CChHHHHHHhhcCccccc--------------cc-c
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAM---GGSQ-----------SDGSAITRRMWNRTYQDP--------------KS-I 79 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~---g~~~-----------~nGt~I~~~m~nrtF~Gv--------------ys-L 79 (148)
.++.|+++.||||+++|+||+++... +... .+|..|.+.|++.+|.|+ |. +
T Consensus 309 ~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~~~~~I~ 388 (433)
T 4f11_A 309 GPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERMGTIKFT 388 (433)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEECEEEEE
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCceeeeEEEE
Confidence 56788999999999999999999764 1111 248999999999999997 22 2
Q ss_pred cCCCCCcEEEEEeeec---------------CCCCCCCCC
Q psy8885 80 LPTTTPLRLVHKYILY---------------YVIPLCNHK 104 (148)
Q Consensus 80 D~~~g~f~vV~~Y~g~---------------g~~PLd~P~ 104 (148)
+...+.++.|+.|+.. +.||.|.|.
T Consensus 389 ~~~~g~~~~VG~~~~~~~~l~~~~~~i~W~~~~~P~D~~~ 428 (433)
T 4f11_A 389 QFQDSREVKVGEYNAVADTLEIINDTIRFQGSEPPKDDYK 428 (433)
T ss_dssp EEETTEEEEEEEEETTTTEEEECTTTCCCSSSSCCCSSGG
T ss_pred EEECCceEEEEEEECCCCeEEEeCCceECCCCCCCCCccc
Confidence 3345789999999721 568999885
No 5
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.05 E-value=9.1e-06 Score=66.54 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCC-----------------CChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-----------------~nGt~I~~~m~nrtF~Gv 76 (148)
.++.|+++.||||+++|+||+++.+++++. .+|..|.+.|++.+|+|+
T Consensus 271 ~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~ 335 (384)
T 3saj_A 271 RPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGL 335 (384)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEET
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCccc
Confidence 568899999999999999999998865432 689999999999999998
No 6
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=97.91 E-value=2.1e-05 Score=65.10 Aligned_cols=48 Identities=17% Similarity=0.036 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCC-----------------CCChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGS-----------------QSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~-----------------~~nGt~I~~~m~nrtF~Gv 76 (148)
.++.|+++.||||+++|+||+++...+.+ ..+|..|.+.|++.+|+|+
T Consensus 274 ~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~ 338 (389)
T 3o21_A 274 PLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGM 338 (389)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEET
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCccccc
Confidence 57899999999999999999999865421 2579999999999999998
No 7
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.88 E-value=2.4e-05 Score=69.83 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=51.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHcCCCC-----------------CChHHHHHHhhcCccccc---cccc-------
Q psy8885 28 ESVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAITRRMWNRTYQDP---KSIL------- 80 (148)
Q Consensus 28 ~~v~~yaa~LyDAV~LYA~ALnetL~~g~~~-----------------~nGt~I~~~m~nrtF~Gv---ysLD------- 80 (148)
..++.|+++.||||+++|+||+++...+++. .+|.+|.+.|.+.+|+|+ +..|
T Consensus 267 ~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~ 346 (823)
T 3kg2_A 267 ATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRIN 346 (823)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccc
Confidence 3578899999999999999999998865432 589999999999999998 2222
Q ss_pred -------CCCCCcEEEEEee
Q psy8885 81 -------PTTTPLRLVHKYI 93 (148)
Q Consensus 81 -------~~~g~f~vV~~Y~ 93 (148)
...+.+..|+.|+
T Consensus 347 ~~~~I~~~~~~g~~~vg~w~ 366 (823)
T 3kg2_A 347 YTINIMELKTNGPRKIGYWS 366 (823)
T ss_dssp CEEEEEEECSSCEEEEEEEE
T ss_pred cEEEEEEEcCCCCeeEEEEc
Confidence 2345566777776
No 8
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.88 E-value=1.4e-05 Score=65.35 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCC----------------C-CChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGS----------------Q-SDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~----------------~-~nGt~I~~~m~nrtF~Gv 76 (148)
.++.|+++.||||+++|.||+++.+.+.+ + .+|..|.+.|++.+|+|+
T Consensus 268 ~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~ 332 (376)
T 3hsy_A 268 TIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGL 332 (376)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEET
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCC
Confidence 58899999999999999999999875422 1 578899999999999998
No 9
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=97.71 E-value=4.7e-05 Score=62.10 Aligned_cols=76 Identities=12% Similarity=-0.021 Sum_probs=51.2
Q ss_pred chhHHHHHHH--HhcCCCCcccC-CcchhhHHHHHHHHHHHHHHHHHHHHHcCC---------CCCChHHHHHHhhcCcc
Q psy8885 6 NGYVRLMVKK--VAKEGYNFTFG-NESVSTFVTAFYDAVILYSIALNETIAMGG---------SQSDGSAITRRMWNRTY 73 (148)
Q Consensus 6 ~~~F~~eVk~--~a~~pFn~t~~-~~~v~~yaa~LyDAV~LYA~ALnetL~~g~---------~~~nGt~I~~~m~nrtF 73 (148)
+..|.+.-++ ...+|+.++.. ...++.|+++.||||+++|.||+++-+.++ ...+|..|.+.|++.+|
T Consensus 258 ~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~ 337 (395)
T 3h6g_A 258 VSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHW 337 (395)
T ss_dssp HHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEE
T ss_pred HHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCC
Confidence 4456665532 24456655432 235789999999999999999998743221 23699999999999999
Q ss_pred ccc---ccccC
Q psy8885 74 QDP---KSILP 81 (148)
Q Consensus 74 ~Gv---ysLD~ 81 (148)
+|+ +.+|+
T Consensus 338 ~G~tG~i~fd~ 348 (395)
T 3h6g_A 338 EGLTGRITFNK 348 (395)
T ss_dssp EETTEEEECCT
T ss_pred cCcceeeEecC
Confidence 998 44554
No 10
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=97.51 E-value=0.00037 Score=56.85 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=40.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCC------------CCCChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGG------------SQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~------------~~~nGt~I~~~m~nrtF~Gv 76 (148)
.++.|+++.||||+++|+||+++.+.+. ...+|..|.+.|++.+|+|+
T Consensus 280 ~p~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~ 339 (393)
T 3om0_A 280 GPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGL 339 (393)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEET
T ss_pred CCchHHHHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCc
Confidence 4678999999999999999998854221 12699999999999999998
No 11
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=97.25 E-value=0.00086 Score=53.88 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=55.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccC----------------CC-----C
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILP----------------TT-----T 84 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~----------------~~-----g 84 (148)
.++.|++.-|||+++++.||+++ |. .|+..|.+.|.+.+|.|+ ..+|+ .. .
T Consensus 275 ~p~~~a~~~Yda~~~~~~Al~~a---g~--~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~~~~~i~~v~~~~~~~~~~~ 349 (375)
T 3i09_A 275 MPSSLQAADYSSVTTYLKAVQAA---GS--TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMIHDMYLMEVKKPSESKEPWD 349 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTSCEESSSCEEEECTTSBEECCEEEEEECCGGGCCSTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhCCCccCCCCceEECCCCCeeeeeEEEEEecccccccccc
Confidence 45789999999999999999987 32 589999999999988876 11221 11 1
Q ss_pred CcEEEEEeeec-CCCCCCCCCcee
Q psy8885 85 PLRLVHKYILY-YVIPLCNHKCTI 107 (148)
Q Consensus 85 ~f~vV~~Y~g~-g~~PLd~P~CGF 107 (148)
.+++|..+.+. ..||++.+.|-+
T Consensus 350 ~~~~~~~~~~~~~~~p~~~~~C~~ 373 (375)
T 3i09_A 350 YYKVVATIPGEQAFTTKQETRCAL 373 (375)
T ss_dssp CEEEEEEECHHHHSCCTTTCCCTT
T ss_pred hheeeeecCHHHhcCCcccCCCCC
Confidence 26777777764 458999999954
No 12
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=96.95 E-value=0.0013 Score=53.06 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc----ccccC----------------CC-----
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP----KSILP----------------TT----- 83 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv----ysLD~----------------~~----- 83 (148)
.++.+++.-|||+++++.||+++ |. .|+..|.+.|.+.+|.|. ..+|+ ..
T Consensus 278 ~p~~~~~~~Yda~~~~~~Al~~a---g~--~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~~~~i~~~~~~~~~~~~~ 352 (379)
T 3n0w_A 278 MPTNNQAGGYSAALQYLKAVNAI---GS--KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLVRDMYLVRAKKPEDQKGDW 352 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---TC--CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEECCEEEEEECCGGGCCSTT
T ss_pred CCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCccccCCCceeECCCCCcccceEEEEEEchhhccCcc
Confidence 35789999999999999999987 32 589999999999887754 11221 11
Q ss_pred CCcEEEEEeeec-CCCCCCCCCcee
Q psy8885 84 TPLRLVHKYILY-YVIPLCNHKCTI 107 (148)
Q Consensus 84 g~f~vV~~Y~g~-g~~PLd~P~CGF 107 (148)
..+++|..+.+. ..||++.|.|-.
T Consensus 353 ~~~~~v~~~~~~~~~~p~~~~~c~~ 377 (379)
T 3n0w_A 353 DYYDVVATIGPEQAFGPLSESRCAM 377 (379)
T ss_dssp CCEEEEEEECHHHHHCCGGGCCCGG
T ss_pred chhheecccCHHHhcCCccccCCCC
Confidence 126777777764 358999999964
No 13
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=96.81 E-value=0.0012 Score=57.08 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC----------CCCCChHHHHH-HhhcCccc
Q psy8885 30 VSTFVTAFYDAVILYSIALNETIAMG----------GSQSDGSAITR-RMWNRTYQ 74 (148)
Q Consensus 30 v~~yaa~LyDAV~LYA~ALnetL~~g----------~~~~nGt~I~~-~m~nrtF~ 74 (148)
...++...||||+++|+||+++.... ....+|.+|.+ .|++.+|.
T Consensus 362 ~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~ 417 (555)
T 2e4u_A 362 QESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFT 417 (555)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEEC
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeec
Confidence 45688999999999999999997621 12368889998 89999998
No 14
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=96.75 E-value=0.00082 Score=55.10 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCCCChHHHHHHhhcCccccc
Q psy8885 31 STFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 31 ~~yaa~LyDAV~LYA~ALnetL~~--g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
+.+++.-|||+++++.||+++... .+++.++..|.+.|++.+|.|+
T Consensus 302 ~~~a~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~ 349 (419)
T 3h5l_A 302 TASGCQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGP 349 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEET
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccC
Confidence 569999999999999999987542 2234688999999999999998
No 15
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=96.67 E-value=0.005 Score=49.01 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
.++.|++.-|||+++++.||+++ |.+..++..|.+.|.+.+|+|+
T Consensus 285 ~p~~~~~~~yda~~~~~~al~~~---g~~~~~~~~l~~~l~~~~~~g~ 329 (375)
T 4evq_A 285 PPDVFAVQGWDAGQLLDAGVKAV---GGDVAKRKELNAAMAAASFASP 329 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHT---TTCTTCHHHHHHHHHTCEEEET
T ss_pred CCcHHHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHhcCCcccC
Confidence 35789999999999999999975 4445789999999999999998
No 16
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=96.29 E-value=0.0093 Score=47.50 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCc-cccc
Q psy8885 30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT-YQDP 76 (148)
Q Consensus 30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrt-F~Gv 76 (148)
++.+++.-|||+++++.||+++ |. .++..|.+.|.+.+ |.|+
T Consensus 286 p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~l~~~~~~~g~ 328 (366)
T 3td9_A 286 PAALNALGYDAYMVLLDAIERA---GS--FDREKIAEEIRKTRNFNGA 328 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCCSEEET
T ss_pred CchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCCccc
Confidence 5789999999999999999987 22 68999999999997 9998
No 17
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=96.17 E-value=0.0095 Score=50.70 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC----------CCCChHHHHHHhhcCccccc
Q psy8885 32 TFVTAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 32 ~yaa~LyDAV~LYA~ALnetL~~g~----------~~~nGt~I~~~m~nrtF~Gv 76 (148)
..+...|||||++|+||++++.... ...++.++.+.|++.+|.+.
T Consensus 374 ~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~ 428 (481)
T 3mq4_A 374 GKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGS 428 (481)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEECT
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceeecC
Confidence 4455799999999999999986321 13467789999999999865
No 18
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=95.86 E-value=0.0097 Score=46.69 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcC--CCCCChHHHHHHhhcC-ccccc---ccccCC
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMG--GSQSDGSAITRRMWNR-TYQDP---KSILPT 82 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g--~~~~nGt~I~~~m~nr-tF~Gv---ysLD~~ 82 (148)
.++.|++.-|||++++|.||+++.+.+ ++..++..|.+.|.+. .|.|+ +++|++
T Consensus 279 ~p~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~ 338 (362)
T 3snr_A 279 SRSQFAGHSYDAFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTET 338 (362)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSS
T ss_pred CCCchhHhHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCC
Confidence 357899999999999999999998875 3445688999999988 89998 445543
No 19
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=95.84 E-value=0.014 Score=47.28 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcC------------CCC-CChHHHHHHhhcCcc-ccc
Q psy8885 32 TFVTAFYDAVILYSIALNETIAMG------------GSQ-SDGSAITRRMWNRTY-QDP 76 (148)
Q Consensus 32 ~yaa~LyDAV~LYA~ALnetL~~g------------~~~-~nGt~I~~~m~nrtF-~Gv 76 (148)
..++..||||++.|+||++++..+ ..+ ..|..+.+.+++.+| .|+
T Consensus 276 ~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~ 334 (384)
T 3qek_A 276 NESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGV 334 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEET
T ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCC
Confidence 457899999999999999998632 112 478899998988888 765
No 20
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=95.79 E-value=0.011 Score=46.83 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcC--CCCCChHHHHHHhhcC-ccccc---ccccC
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMG--GSQSDGSAITRRMWNR-TYQDP---KSILP 81 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g--~~~~nGt~I~~~m~nr-tF~Gv---ysLD~ 81 (148)
.++.|+++-|||+++++.||+++.+.+ ++..++..|.+.|.+. .|.|+ +++|+
T Consensus 303 ~p~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~ 361 (386)
T 3sg0_A 303 APTIFGVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTP 361 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCS
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECC
Confidence 357899999999999999999998876 3445688999999888 79997 44554
No 21
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=95.56 E-value=0.016 Score=47.85 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCC--------------C-CChHHHHHHhhcCccccc
Q psy8885 32 TFVTAFYDAVILYSIALNETIAMGGS--------------Q-SDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 32 ~yaa~LyDAV~LYA~ALnetL~~g~~--------------~-~nGt~I~~~m~nrtF~Gv 76 (148)
.++++.||||++.|+|+.++..+++. + .+|..+.+.|.+.+|+|.
T Consensus 258 ~~~~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl 317 (364)
T 3qel_B 258 GLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR 317 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc
Confidence 57889999999999999998875311 1 489999999999999997
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=95.53 E-value=0.02 Score=45.30 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=38.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
..+.+++.-|||++++|.||+++ | ...++..|.+.|.+.+|.|+
T Consensus 277 ~p~~~~~~~yda~~~~~~al~~~---g-~~~~~~~l~~al~~~~~~g~ 320 (368)
T 4eyg_A 277 RPGFMAVGGYDGIHLVFEALKKT---G-GKADGDSLIAAMKGMKWESP 320 (368)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHT---T-TCCSHHHHHHHHTTCEEEET
T ss_pred CCChHHHHHHHHHHHHHHHHHHh---C-CCCCHHHHHHHHHcCCcccC
Confidence 45789999999999999999986 3 23589999999999999987
No 23
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=94.86 E-value=0.066 Score=43.08 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=40.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT 82 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~ 82 (148)
.++.+++.-|||+++++.||+++ |. .|+..|.+.|.+.+|.|+ +.+|++
T Consensus 280 ~p~~~a~~~Yda~~~l~~Al~~a---g~--~~~~~v~~aL~~~~~~g~~G~i~f~~~ 331 (374)
T 3n0x_A 280 PPDFFTAGGFSAAMAVVTAVQKA---KS--TDTEKLIAAMEGMEFDTPKGKMVFRKE 331 (374)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCEEEETTEEEEECTT
T ss_pred CCChhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCccCCCCCEEECcc
Confidence 45789999999999999999987 32 689999999999999998 335543
No 24
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=94.54 E-value=0.047 Score=43.09 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885 30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
++.|++.-|||+++++.||+++ |. .++..|.+.|.+.+|.|+
T Consensus 272 p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~l~~~~~~g~ 313 (356)
T 3ipc_A 272 PEAYTLYSYAAMQAIAGAAKAA---GS--VEPEKVAEALKKGSFPTA 313 (356)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHH---TC--CCHHHHHHHHTTCCBCCT
T ss_pred cchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCCCc
Confidence 4568999999999999999987 32 689999999999999998
No 25
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=94.49 E-value=0.076 Score=42.70 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885 30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
.+.+++.-|||++++|.||+++ | ..++..|.+.|.+.+|.|+
T Consensus 282 p~~~~~~~Yda~~~~a~Al~~a---g--~~~~~~v~~al~~~~~~g~ 323 (387)
T 3i45_A 282 PFVGSLVGYNTLTAMAVAFEKA---G--GTESETLVETLKDMAFSTP 323 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---T--SCCHHHHHHHTTTCEEEET
T ss_pred CCcHHHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHhcCCCcCC
Confidence 4678999999999999999987 3 2689999999999999997
No 26
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=94.32 E-value=0.079 Score=41.79 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHH-HHHHhhcC-ccccc---ccccCC
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSA-ITRRMWNR-TYQDP---KSILPT 82 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~-I~~~m~nr-tF~Gv---ysLD~~ 82 (148)
.++.+++.-|||++++|.||+++ | ..++.+ |.+.|.+. +|.|+ +.+|++
T Consensus 274 ~p~~~~~~~yda~~~~~~al~~a---g--~~~~~~~~~~~l~~~~~~~g~~G~~~f~~~ 327 (358)
T 3hut_A 274 IPTLFAAHGYDAVGIMLAAVGRA---G--PEVTRESLRDALAATDRYAGVTGITRFDPE 327 (358)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---C--TTCCHHHHHHHHHTCCSEEETTEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh---C--CCChHHHHHHHHHhcCCCcCCceeeEECCC
Confidence 45789999999999999999986 3 246788 99999988 89998 445543
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=94.12 E-value=0.044 Score=42.84 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
..+.++++-|||++++|.||+++ | ..++..|.+.|.+.+|.|+
T Consensus 272 ~~~~~~~~~yda~~~~~~al~~~---g--~~~~~~l~~~l~~~~~~g~ 314 (346)
T 1usg_A 272 PSGPYVWITYAAVQSLATALERT---G--SDEPLALVKDLKANGANTV 314 (346)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---C--CCCHHHHHHHHHHHCEEET
T ss_pred CCchhHHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHHhCCCccc
Confidence 35679999999999999999987 3 2478999999988889987
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=93.87 E-value=0.016 Score=46.84 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccc--cc
Q psy8885 30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ--DP 76 (148)
Q Consensus 30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~--Gv 76 (148)
++.+++.-|||+++++.||+++.+.|....++..|.+.|.+..|. |+
T Consensus 286 ~~~~~~~~yda~~~l~~Al~~a~~~g~~~~~~~~v~~aL~~~~~~~~G~ 334 (391)
T 3eaf_A 286 INLRVVQGFVNVWLLIKAIESVTSQDLQERGGEALKEALEANTFDLGGI 334 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHTHHHHHHHHHHCCBCSTTC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCCCCc
Confidence 468999999999999999998754441124788999999888787 65
No 29
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=93.16 E-value=0.13 Score=41.47 Aligned_cols=51 Identities=27% Similarity=0.295 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCCC
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPTT 83 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~~ 83 (148)
.++.|+++-|||+++++.||+++ +++ .|+..|...|.+.+|.|+ +++|+++
T Consensus 280 ~~~~~a~~~Yda~~~l~~Ai~~~---ag~-~d~~~v~~al~~~~~~~~~G~i~fd~~~ 333 (371)
T 4f06_A 280 EVTMTSVAAYDGARLIYKMIEAT---SGK-SDPDKAIAAVKGMKWVSPRGEVSIDPET 333 (371)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHT---TTS-CCHHHHHHHHTTCEEEETTEEEEECTTT
T ss_pred CccchHHHHHHHHHHHHHHHHHh---cCC-CCHHHHHHHHhCCCeeCCcEEEEEcCCC
Confidence 46788999999999999999754 332 589999999999999987 5567654
No 30
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=92.40 E-value=0.18 Score=40.59 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv 76 (148)
..+.+++.-|||++++|.||+++ |. .++..|.+.|.+.+|.|+
T Consensus 281 ~~~~~~~~~yda~~~~~~Al~~a---g~--~~~~~l~~al~~~~~~g~ 323 (385)
T 1pea_A 281 TITAWAEAAYWQTLLLGRAAQAA---GN--WRVEDVQRHLYDIDIDAP 323 (385)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCCEEET
T ss_pred CCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhhCcccCC
Confidence 36789999999999999999987 32 479999999998889987
No 31
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=92.32 E-value=0.079 Score=45.22 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc---CC-------CCCChHHHH-HHhhcCcccc
Q psy8885 33 FVTAFYDAVILYSIALNETIAM---GG-------SQSDGSAIT-RRMWNRTYQD 75 (148)
Q Consensus 33 yaa~LyDAV~LYA~ALnetL~~---g~-------~~~nGt~I~-~~m~nrtF~G 75 (148)
.+...|||||..|+||++++.. +. ...++.++. +.|++.+|.+
T Consensus 364 ~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~ 417 (479)
T 3sm9_A 364 KIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTA 417 (479)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEEC
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeecc
Confidence 3468999999999999999861 11 124677899 8899999965
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=91.38 E-value=0.3 Score=38.74 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=38.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcC-cccc-c
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR-TYQD-P 76 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nr-tF~G-v 76 (148)
.++.+++.-|||+++++.||+++ | ...++..|.+.|.+. .|.| .
T Consensus 281 ~p~~~a~~~yda~~~~~~al~~a---g-~~~~~~~v~~aL~~~~~~~~~~ 326 (364)
T 3lop_A 281 DLSFRAVEGFVAAKVLAEAIRRA---G-PKPTREQVRHALTELRDYDVGG 326 (364)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH---C-SSCCHHHHHHHHHTCEEEESST
T ss_pred CCChHHHHHHHHHHHHHHHHHHh---C-CCCCHHHHHHHHHhcCCccCCC
Confidence 46789999999999999999987 3 345899999999998 6999 6
No 33
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=90.03 E-value=0.3 Score=41.78 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC----------CCCChHHHHHHhhcCccccc
Q psy8885 35 TAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQDP 76 (148)
Q Consensus 35 a~LyDAV~LYA~ALnetL~~g~----------~~~nGt~I~~~m~nrtF~Gv 76 (148)
...|||||..|+||++++.... ...++.++.+.|++.+|.+.
T Consensus 384 ~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~ 435 (496)
T 3ks9_A 384 GFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGV 435 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECT
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCC
Confidence 3699999999999999986321 12467899999999999864
No 34
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=88.85 E-value=0.55 Score=37.58 Aligned_cols=43 Identities=9% Similarity=-0.038 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCc----cc
Q psy8885 31 STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT----YQ 74 (148)
Q Consensus 31 ~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrt----F~ 74 (148)
+.+++.-|||+++++.||+++-..++ ..++..|.+.|.+.+ |.
T Consensus 284 ~~~~~~~yda~~~~~~al~~ag~~~~-~~~~~~v~~aL~~~~~~~~~~ 330 (392)
T 3lkb_A 284 SVNYTNGMLAAAIAVEAIRRAQERFK-RITNETVYQAIVGMNGPNAFK 330 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHTCCGGGCBC
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCC-CCCHHHHHHHHHhcCCCcCcc
Confidence 45589999999999999999876554 468999999999887 98
No 35
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=87.83 E-value=0.4 Score=30.60 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q psy8885 122 TLRLEKKLRRLFRQKEESTRRL 143 (148)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ 143 (148)
-||||||+.+|-+|||.+..-|
T Consensus 8 ILRLErEIE~Lqrqke~~~~~L 29 (51)
T 2lw9_A 8 ILRLEKEIEDLQRMKEQQELSL 29 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999876544
No 36
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=87.60 E-value=0.59 Score=36.81 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcC-ccccc---ccccC
Q psy8885 29 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR-TYQDP---KSILP 81 (148)
Q Consensus 29 ~v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nr-tF~Gv---ysLD~ 81 (148)
.++.|+++-|||++++|.||+++ .|...|.+.|... .|.|+ +++|+
T Consensus 278 ~p~~~a~~~Yda~~~la~Ai~~a-------~~~~~v~~aL~~~~~~~g~~G~i~f~~ 327 (353)
T 4gnr_A 278 EPSTFAALAYDSVHLVANAAKGA-------KNSGEIKDNLAXTKDFEGVTGQTSFDA 327 (353)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC-------SSHHHHHHHHHTCCCEEETTEEECCCT
T ss_pred CCChhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhcCCCccCceeEEECC
Confidence 45789999999999999998632 2677888888655 59988 44554
No 37
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=40.62 E-value=32 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=15.5
Q ss_pred CCCCCCCCceecCC-----CchHHHHHHH
Q psy8885 97 VIPLCNHKCTIANS-----ILSQQYVAWS 120 (148)
Q Consensus 97 ~~PLd~P~CGF~G~-----~C~~qyl~~~ 120 (148)
.|.+..=-|||.|+ .|+.=|...+
T Consensus 15 ~~~lC~ngCGFfGnpaT~nlCSkCyrd~~ 43 (74)
T 2c7n_A 15 SDLLCKKGCGYYGNPAWQGFCSKCWREEY 43 (74)
T ss_dssp ---CCTTCSSSCCCGGGTTCCHHHHHHHH
T ss_pred cchhHHhCCCCCCChhhcCccHHHHHHHH
Confidence 45577778999986 6776666554
No 38
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=31.78 E-value=7.9 Score=22.68 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=9.5
Q ss_pred CceecCCCchHH
Q psy8885 104 KCTIANSILSQQ 115 (148)
Q Consensus 104 ~CGF~G~~C~~q 115 (148)
-|.|.|++|-.|
T Consensus 2 gcafegescnvq 13 (37)
T 3q8j_A 2 GCAFEGESCNVQ 13 (37)
T ss_dssp CCBCTTSEEETT
T ss_pred CceecCcccceE
Confidence 499999999443
No 39
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=27.09 E-value=54 Score=21.44 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=16.8
Q ss_pred CCCCCCCCceecCC-----CchHHHHH
Q psy8885 97 VIPLCNHKCTIANS-----ILSQQYVA 118 (148)
Q Consensus 97 ~~PLd~P~CGF~G~-----~C~~qyl~ 118 (148)
.|.|..--|||.|+ .|+.=|..
T Consensus 12 ~~~lC~ngCGFfGnpaT~nlCSkCyr~ 38 (62)
T 2kzy_A 12 GPMLCSTGCGFYGNPRTNGMCSVCYKE 38 (62)
T ss_dssp CCCBCTTCCSSBCCTTTTSCCHHHHHH
T ss_pred cccchhhCCCCcCChhhcCcCHHHHHH
Confidence 56789999999986 56666654
No 40
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=26.00 E-value=20 Score=21.31 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=10.1
Q ss_pred CCCCCCCceecCCCc
Q psy8885 98 IPLCNHKCTIANSIL 112 (148)
Q Consensus 98 ~PLd~P~CGF~G~~C 112 (148)
-|..+|+||- ++|
T Consensus 8 SPFemPPC~s--~~C 20 (37)
T 1ju8_A 8 SPFEVPPCRS--RDC 20 (37)
T ss_dssp CSSSSSSSSC--TTS
T ss_pred CCcccCCCCC--CCe
Confidence 4999999985 444
No 41
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=25.83 E-value=20 Score=21.34 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=10.1
Q ss_pred CCCCCCCceecCCCc
Q psy8885 98 IPLCNHKCTIANSIL 112 (148)
Q Consensus 98 ~PLd~P~CGF~G~~C 112 (148)
-|..+|+||- ++|
T Consensus 8 SPFemPPC~s--~~C 20 (37)
T 1p8b_A 8 SPFEMPPCGT--SAC 20 (37)
T ss_dssp CTTCSSGGGC--SSS
T ss_pred cCcccCCCCC--CCe
Confidence 4999999985 444
No 42
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.26 E-value=87 Score=17.79 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhh
Q psy8885 124 RLEKKLRRLFRQ 135 (148)
Q Consensus 124 ~~~~~~~~~~~~ 135 (148)
|||.++|.|-.-
T Consensus 3 rlee~~r~l~~i 14 (32)
T 2akf_A 3 RLEEDVRNLNAI 14 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 677777766443
No 43
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=20.21 E-value=88 Score=24.23 Aligned_cols=38 Identities=13% Similarity=-0.062 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHhhcCccccc---ccccCC
Q psy8885 30 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDP---KSILPT 82 (148)
Q Consensus 30 v~~yaa~LyDAV~LYA~ALnetL~~g~~~~nGt~I~~~m~nrtF~Gv---ysLD~~ 82 (148)
...+++.=|||+.|.+.+.. . ..+.+.+|.|+ +++|++
T Consensus 259 ~~~~~AlgyDA~~l~~~l~~-~--------------~~~~~~~f~G~tG~i~fd~~ 299 (327)
T 3ckm_A 259 LMRLYAMGADAWLLINQFNE-L--------------RQVPGYRLSGLTGILSADTN 299 (327)
T ss_dssp HHHHHHHHHHHHHHHHTHHH-H--------------HHSTTCCEEETTEEEEECTT
T ss_pred CCchHHHHHHHHHHHHHHHH-h--------------cCCCCCCceeceEEEEECCC
Confidence 34567778999988654322 1 22334568887 667654
Done!