RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8885
(148 letters)
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 66.0 bits (160), Expect = 1e-13
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 13 VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
+K +A + +NFT + + +F+D ++LY A+ ET+A GG+ +DG IT+RMWNR+
Sbjct: 297 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 356
Query: 73 YQDP 76
+Q
Sbjct: 357 FQGV 360
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 55.5 bits (133), Expect = 5e-10
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 19 EGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
E + V+ FV F+DA++LY +AL+E + G S+ DG I ++ WNRT++
Sbjct: 301 EKQGLNM-EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 355
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.25
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 27/115 (23%)
Query: 44 YSIALNETIAMGGS--------------QSDGSAITRRMWNRTYQDPKSILPTTTPLRLV 89
Y+ AL ++ + A+ R R+ +I P
Sbjct: 1767 YA-AL---ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 90 HKYILYYVIPLCNHK---CTIANS-ILSQQYVAWSQTLR----LEKKLRRLFRQK 136
+ + Y V + I N + +QQYVA + LR + L + QK
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-AGDLRALDTVTNVLNFIKLQK 1876
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.31
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 27/126 (21%)
Query: 9 VRLMVKK--VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITR 66
V + K V K+ T + SI L + + A+ R
Sbjct: 408 VNKLHKYSLVEKQPKESTIS----------------IPSIYLELKV----KLENEYALHR 447
Query: 67 RMWNRTYQDPKSILPTTTPLRLVHKYILYYVIPLCNHKCTIANSILSQQYVAWSQTLR-L 125
+ + Y PK+ + +Y + + +H I + + R L
Sbjct: 448 SIVDH-YNIPKTFDSDDLIPPYLDQYFYSH---IGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 126 EKKLRR 131
E+K+R
Sbjct: 504 EQKIRH 509
Score = 28.3 bits (62), Expect = 1.2
Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 63/186 (33%)
Query: 1 MIDKGNGYVRLMVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSD 60
++ K V+ V++V + Y F + T +Y + +D
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRL------YND 122
Query: 61 GSAITRRMWNRTYQDPKSILPTTTPLR--------LVH------KYILYYVIPLCNH--- 103
+ +R + L L L+ K + + +C
Sbjct: 123 NQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKV 176
Query: 104 --------------KCTIANSILSQQYVAWSQ---------------TLRLE---KKLRR 131
C ++L Q LR+ +LRR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 132 LFRQKE 137
L + K
Sbjct: 237 LLKSKP 242
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase;
HET: MIR; 1.35A {Pseudoalteromonas SP}
Length = 185
Score = 27.2 bits (60), Expect = 1.9
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 2 IDKGNGYVRLMVKKVAKEGYNFTFGNESVS 31
+ + G+V+L+ K E + N S+S
Sbjct: 18 LQQEEGWVKLLQDKYDAEQSDIVLINASIS 47
>1yue_A Head vertex protein GP24; bacteriophage T4, capsid protein,
bacteriophage, virus, HK97, MAD, viral protein; 2.90A
{Enterobacteria phage T4}
Length = 427
Score = 27.2 bits (58), Expect = 2.8
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 51 TIAMGGSQSDGSAITRRMWNRTYQDPKSILPTTTPLRLVHKYILYY 96
T + + + A+TR Y D + T P+ +
Sbjct: 14 TNSNSIGRPNLVALTRATTKLIYSDIVATQRTNQPVAAFYGIKYLN 59
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 25.6 bits (56), Expect = 6.2
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 36 AFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
Y A LY +M G + + R M +R+ D I
Sbjct: 236 PLYFADRLYD-------SMKGKGTRDKVLIRIMVSRSEVDMLKI 272
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 25.6 bits (56), Expect = 7.3
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 21 YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAIT 65
YN S F YD + + + L + + S I
Sbjct: 301 YNNKRSGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQ 345
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 25.5 bits (55), Expect = 7.6
Identities = 4/38 (10%), Positives = 8/38 (21%)
Query: 21 YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQ 58
+ + YD V + + A
Sbjct: 263 DHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDI 300
>3sg0_A Extracellular ligand-binding receptor; structural genomics,
PSI-biology; HET: 173; 1.20A {Rhodopseudomonas
palustris} PDB: 4dqd_A*
Length = 386
Score = 25.4 bits (56), Expect = 8.9
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 13 VKKVAK---EGYNFTFGNESVSTFVTAFYDAVILYSIALNE--TIAMGGSQSDGSAITRR 67
+KV + Y G + + F +D++ L A+ A G+ +AI +
Sbjct: 284 FRKVKARFVDAYKAANGGAAPTIFGVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQ 343
Query: 68 MWN 70
+
Sbjct: 344 IEK 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.391
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,180,246
Number of extensions: 112535
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 15
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)