RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8885
         (148 letters)



>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 49.4 bits (116), Expect = 2e-08
 Identities = 25/62 (40%), Positives = 42/62 (67%)

Query: 13  VKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 72
           +K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR+
Sbjct: 297 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 356

Query: 73  YQ 74
           +Q
Sbjct: 357 FQ 358


>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 45.1 bits (105), Expect = 6e-07
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 17  AKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 74
           +          + V+ FV  F+DA++LY +AL+E +  G S+ DG  I ++ WNRT++
Sbjct: 296 SSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFE 353


>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 318

 Score = 29.2 bits (65), Expect = 0.19
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%)

Query: 38  YDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
           Y A  LY        AM G+ +D   + R + +R+  D  +I
Sbjct: 247 YLAETLYY-------AMKGAGTDDHTLIRVIVSRSEIDLFNI 281


>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 341

 Score = 28.4 bits (63), Expect = 0.29
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 33  FVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
             TA Y A  L+        AM G  +  + + R M +R+  D   I
Sbjct: 241 RSTAEYFAERLFK-------AMKGLGTRDNTLIRIMVSRSELDMLDI 280


>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 343

 Score = 27.7 bits (61), Expect = 0.57
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 38  YDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
           + A  L+        AM G  +    + R M +R+  D   I
Sbjct: 276 FFAEKLHQ-------AMKGIGTRHKTLIRIMVSRSEIDMNDI 310


>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}
          Length = 315

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 37  FYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
            Y A  L+        AM G  +    + R + +R+  D  +I
Sbjct: 246 AYFAERLHH-------AMKGLGTSDKTLIRILVSRSEIDLANI 281


>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
           [TaxId: 3635]}
          Length = 318

 Score = 25.4 bits (55), Expect = 2.9
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 38  YDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
           Y   +L         A+    +D  A+TR +  R   D K I
Sbjct: 247 YFEKVLRL-------AINRRGTDEGALTRVVCTRAEVDLKVI 281


>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
           C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 66

 Score = 23.9 bits (52), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 124 RLEKKLRRLFRQKEESTRRLSN 145
           R EK+L+ L    E S R+L++
Sbjct: 8   RQEKRLKELLALAERSQRKLAS 29


>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 319

 Score = 24.6 bits (53), Expect = 6.7
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 7/47 (14%)

Query: 33  FVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
                Y A  LY        +M G  +    + R M +R+  D   I
Sbjct: 244 QNKPLYFADRLYD-------SMKGKGTRDKVLIRIMVSRSEVDMLKI 283


>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 321

 Score = 24.2 bits (52), Expect = 8.8
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 28  ESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQDPKSI 79
           +     V +  +  + ++  L +  +M G+ ++   +TR M +R+  D  +I
Sbjct: 238 DVFVAIVQSVKNKPLFFADKLYK--SMKGAGTEEKTLTRIMVSRSEIDLLNI 287


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 530,171
Number of extensions: 21767
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 12
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)