BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8889
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 233/453 (51%), Gaps = 41/453 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
RN N LT +DA+ VYG +E AR+LR + GLL +N FQ+ G + LLP+ ++ D
Sbjct: 49 RNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNG-RALLPFD-NLHD 106
Query: 60 EGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQ 117
+ C +N + CF AG+ R +E L MHTL REHNR+A EL +NP WD E L+Q
Sbjct: 107 DPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQ 166
Query: 118 EARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAA 177
EAR+I+ A +Q ITY +++P +LG M K+ T + Y+DSV+P I + F+ A
Sbjct: 167 EARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPT------YRSYNDSVDPRIANVFT-NA 219
Query: 178 FRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPY 237
FR GHT + + R ++ + R+ + + W + L L+ P
Sbjct: 220 FRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRV--FFASWRVVLEGGIDPILRGLMATPA 277
Query: 238 DLYRPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGL 297
L R NQ++ E+ LF++V GLDL + N+QR RD GL
Sbjct: 278 KLNR-----------QNQIA-------VDEIRERLFEQV-MRIGLDLPALNMQRSRDHGL 318
Query: 298 PGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGSL 356
PGY +R+FCGLP +L + N + K Y P ++D+W GGVSE
Sbjct: 319 PGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGR 378
Query: 357 AGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTI 416
GP+ +CII TQF R GDRFW+E F+ Q Q + + L R++CDNT + T+
Sbjct: 379 VGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDNTG-ITTV 434
Query: 417 QLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAE 449
I + + PR +P+++ + W E
Sbjct: 435 SKNNIFMSNSY--PRDFVNCSTLPALNLASWRE 465
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 233/453 (51%), Gaps = 41/453 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
RN N LT +DA+ VYG +E AR+LR + GLL +N FQ+ G + LLP+ ++ D
Sbjct: 49 RNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNG-RALLPFD-NLHD 106
Query: 60 EGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQ 117
+ C +N + CF AG+ R +E L MHTL REHNR+A EL +NP WD E L+Q
Sbjct: 107 DPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQ 166
Query: 118 EARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAA 177
EAR+I+ A +Q ITY +++P +LG M K+ T + Y+DSV+P I + F+ A
Sbjct: 167 EARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPT------YRSYNDSVDPRIANVFT-NA 219
Query: 178 FRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPY 237
FR GHT + + R ++ + R+ + + W + L L+ P
Sbjct: 220 FRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRV--FFASWRVVLEGGIDPILRGLMATPA 277
Query: 238 DLYRPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGL 297
L R NQ++ E+ LF++V GLDL + N+QR RD GL
Sbjct: 278 KLNR-----------QNQIA-------VDEIRERLFEQV-MRIGLDLPALNMQRSRDHGL 318
Query: 298 PGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGSL 356
PGY +R+FCGLP +L + N + K Y P ++D+W GGVSE
Sbjct: 319 PGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGR 378
Query: 357 AGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTI 416
GP+ +CII TQF R GDRFW+E F+ Q Q + + L R++CDNT + T+
Sbjct: 379 VGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDNTG-ITTV 434
Query: 417 QLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAE 449
I + + PR +P+++ + W E
Sbjct: 435 SKNNIFMSNSY--PRDFVNCSTLPALNLASWRE 465
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 233/453 (51%), Gaps = 41/453 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
RN N LT +DA+ VYG +E AR+LR + GLL +N FQ+ G + LLP+ ++ D
Sbjct: 49 RNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNG-RALLPFD-NLHD 106
Query: 60 EGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQ 117
+ C +N + CF AG+ R +E L MHTL REHNR+A EL +NP WD E L+Q
Sbjct: 107 DPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQ 166
Query: 118 EARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAA 177
EAR+I+ A +Q ITY +++P +LG M K+ T + Y+DSV+P I + F+ A
Sbjct: 167 EARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPT------YRSYNDSVDPRIANVFT-NA 219
Query: 178 FRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPY 237
FR GHT + + R ++ + R+ + + W + L L+ P
Sbjct: 220 FRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRV--FFASWRVVLEGGIDPILRGLMATPA 277
Query: 238 DLYRPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGL 297
L R NQ++ E+ LF++V GLDL + N+QR RD GL
Sbjct: 278 KLNR-----------QNQIA-------VDEIRERLFEQV-MRIGLDLPALNMQRSRDHGL 318
Query: 298 PGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGSL 356
PGY +R+FCGLP +L + N + K Y P ++D+W GGVSE
Sbjct: 319 PGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGR 378
Query: 357 AGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTI 416
GP+ +CII TQF R GDRFW+E F+ Q Q + + L R++CDNT + T+
Sbjct: 379 VGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDNTG-ITTV 434
Query: 417 QLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAE 449
I + + PR +P+++ + W E
Sbjct: 435 SKNNIFMSNSY--PRDFVNCSTLPALNLASWRE 465
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 220/420 (52%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R+ N++T +DA+ VYG + S A LR + GL+ +N ++GL P ++
Sbjct: 176 ARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLA--YPPFNNMK 233
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L +HTL REHNR+A EL ++NPHWD E L+
Sbjct: 234 PSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPRYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R + ++ R LP H L
Sbjct: 346 AFRFGHMEVPSTVSRLDENYQ-----PRGPEAELPLHT-----------------LFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAMDDS--ITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M+ + +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 560
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 218/420 (51%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R+ N +T +DA+ VYG + S A LR + GL+ +N ++GL P ++
Sbjct: 176 ARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLA--YPPFNNVK 233
Query: 59 DEGCTRSNNTQ--LCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L +HTL REHNR+A EL ++NPHWD E L+
Sbjct: 234 PSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAMDDS--ITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M+ + +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 560
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 219/420 (52%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R+ N++T +DA+ VYG + A LR + GL+ +N ++GL P ++
Sbjct: 176 ARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLA--YPPFNNMK 233
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L +HTL REHNR+A EL ++NPHWD E L+
Sbjct: 234 PSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPRYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R + ++ R LP H L
Sbjct: 346 AFRFGHMEVPSTVSRLDENYQ-----PRGPEAELPLHT-----------------LFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAMDDS--ITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M+ + +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKKSKLMNQNKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKILAKKLLDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 560
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 217/420 (51%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R+ N +T +DA+ VYG + A LR + GL+ +N ++GL P ++
Sbjct: 176 ARDQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLA--YPPFNNVK 233
Query: 59 DEGCTRSNNTQ--LCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L +HTL REHNR+A EL ++NPHWD E L+
Sbjct: 234 PSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAMDDS--ITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M+ + +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 560
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 216/420 (51%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + S A LR + GL+ +N ++GL LP+ P
Sbjct: 176 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLA-YLPFNNKKP 234
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NPHW+ E L+
Sbjct: 235 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 560
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 216/420 (51%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + S A LR + GL+ +N ++GL LP+ P
Sbjct: 164 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLA-YLPFNNKKP 222
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NPHW+ E L+
Sbjct: 223 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLY 281
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 282 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 333
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 334 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 371
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 372 WRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 431
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 432 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 491
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 492 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 548
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 215/420 (51%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + A LR + GL+ +N ++GL LP+ P
Sbjct: 176 AREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLA-YLPFNNKKP 234
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NPHW+ E L+
Sbjct: 235 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTHIT 560
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 214/420 (50%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLRTGHG--GLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + S A LR GL+ +N ++GL LP+ P
Sbjct: 164 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLA-YLPFNNKKP 222
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NPHW+ E L+
Sbjct: 223 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLY 281
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 282 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 333
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 334 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 371
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 372 WRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 431
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 432 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 491
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 492 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKFSFSRLICDNTHIT 548
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 214/420 (50%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + A LR + GL+ +N ++GL LP+ P
Sbjct: 176 AREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLA-YLPFNNKKP 234
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NPHW+ E L+
Sbjct: 235 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A IQ IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFIQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKFSFSRLICDNTHIT 560
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 215/420 (51%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + S A L+ + GL+ +N ++GL LP+ P
Sbjct: 176 AREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLA-YLPFNNRKP 234
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NP WD E L+
Sbjct: 235 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A +Q IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFVQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKMSFSRLICDNTHIT 560
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 143/420 (34%), Positives = 214/420 (50%), Gaps = 42/420 (10%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
+R N +T +DA+ VYG + A L+ + GL+ +N ++GL LP+ P
Sbjct: 176 AREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLA-YLPFNNRKP 234
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
C N T CF AG+ R +EQ++L HTL REHNR+A EL K+NP WD E L+
Sbjct: 235 SP-CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLY 293
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A +Q IT+ +++P +LG E M K+ Q GY++SV+P I + F+
Sbjct: 294 QEARKILGAFVQIITFRDYLPIVLGSE-MQKWIPPYQ------GYNNSVDPRISNVFT-F 345
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH +P+ + R L + + W A L L
Sbjct: 346 AFRFGHMEVPSTVSR------------------LDENYQPWGPE----AELPLHTLFFNT 383
Query: 237 YDLYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ + + G D + GL + S+ M D +T E+ N LF+ G DL + N+QR RD
Sbjct: 384 WRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRD 443
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
G+PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 444 HGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVE 503
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT +
Sbjct: 504 RGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKMSFSRLICDNTHIT 560
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 267 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 326
Query: 145 MNKF 148
KF
Sbjct: 327 QLKF 330
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 267 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 326
Query: 145 MNKF 148
KF
Sbjct: 327 QLKF 330
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 266 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 325
Query: 145 MNKF 148
KF
Sbjct: 326 QLKF 329
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 278 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 337
Query: 145 MNKF 148
KF
Sbjct: 338 QLKF 341
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 274 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 333
Query: 145 MNKF 148
KF
Sbjct: 334 QLKF 337
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 267 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 326
Query: 145 MNKF 148
KF
Sbjct: 327 QLKF 330
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 298 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 357
Query: 145 MNKF 148
KF
Sbjct: 358 QLKF 361
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 274 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 333
Query: 145 MNKF 148
KF
Sbjct: 334 QLKF 337
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+V L G +
Sbjct: 266 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFL 325
Query: 145 MNKF 148
KF
Sbjct: 326 QLKF 329
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L +P W DE LFQ AR I+I E I E+ L G +
Sbjct: 298 LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSGYFL 357
Query: 145 MNKF 148
KF
Sbjct: 358 QLKF 361
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 267 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 326
Query: 145 MNKF 148
KF
Sbjct: 327 KLKF 330
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 271 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 330
Query: 145 MNKF 148
KF
Sbjct: 331 KLKF 334
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 284 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 343
Query: 145 MNKF 148
KF
Sbjct: 344 KLKF 347
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 290 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 349
Query: 145 MNKF 148
KF
Sbjct: 350 KLKF 353
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 267 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 326
Query: 145 MNKF 148
KF
Sbjct: 327 KLKF 330
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 271 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 330
Query: 145 MNKF 148
KF
Sbjct: 331 KLKF 334
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 267 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 326
Query: 145 MNKF 148
KF
Sbjct: 327 KLKF 330
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 272 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 331
Query: 145 MNKF 148
KF
Sbjct: 332 KLKF 335
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 273 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 332
Query: 145 MNKF 148
KF
Sbjct: 333 KLKF 336
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REHNRV L + +P W DE LFQ +R I+I E I ++V L G
Sbjct: 272 LMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHF 331
Query: 145 MNKF 148
KF
Sbjct: 332 KLKF 335
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REH RV L +P W DE LFQ A+ I+I E I E+V L G +
Sbjct: 266 LMLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQLSGYFL 325
Query: 145 MNKF 148
KF
Sbjct: 326 QLKF 329
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REH RV L + +P W DE LFQ ++ I+I E I ++V L G
Sbjct: 267 LMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHF 326
Query: 145 MNKF 148
KF
Sbjct: 327 KLKF 330
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEV 144
L + T+W REH RV L + +P W DE LFQ ++ I+I E I ++V L G
Sbjct: 267 LMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHF 326
Query: 145 MNKF 148
KF
Sbjct: 327 KLKF 330
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 314 SKFGSTRGAATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 373
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 374 YTNHTVLPEALERW 387
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 315 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 374
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 375 YTNHTVLPEALERW 388
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 314 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 373
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 374 YTNHTVLPEALERW 387
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 316 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 375
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 376 YTNHTVLPEALERW 389
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 315 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 374
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 375 YTNHTVLPEALERW 388
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 317 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 376
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 377 YTNHTVLPEALERW 390
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 314 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 373
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 374 YTNHTVLPEALERW 387
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 146 NKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF-RIGHTFLPTHIERWSKAHKFIAAAFR 204
+KFG T +D + D V + D A A + F+ WSKA + F
Sbjct: 292 SKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFA 351
Query: 205 -IGHTFLPTHIERW 217
HT LP +ERW
Sbjct: 352 YTNHTVLPEALERW 365
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 282 LDLVSFNIQRGRDFGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGP-GDV 340
+DL + I R R+ +P Y EFR+ + +E+L I +Y G ++
Sbjct: 489 VDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDL--TEDEEAIEVLDDVYDGDVEEL 546
Query: 341 DLWSGGVSEKPLPGSLAGPVFSCIIATQFSYARRGDRFW 379
DL G ++EK + G I + DRF+
Sbjct: 547 DLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFF 585
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,201,528
Number of Sequences: 62578
Number of extensions: 664991
Number of successful extensions: 1421
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 81
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)