Query psy8889
Match_columns 461
No_of_seqs 167 out of 1071
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9k_A Lactoperoxidase, LPO; b 100.0 4E-118 1E-122 953.8 24.9 412 1-451 176-594 (595)
2 1d2v_C Myeloperoxidase; heme-p 100.0 1E-117 5E-122 929.6 25.8 411 1-450 48-466 (466)
3 1q4g_A Prostaglandin G/H synth 100.0 3.8E-94 1.3E-98 766.7 23.9 361 2-425 187-553 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 1.8E-93 6.2E-98 761.4 18.2 358 3-426 188-554 (587)
5 2ju0_B Phosphatidylinositol 4- 21.7 21 0.00073 25.1 0.2 18 115-133 4-21 (52)
6 3r8n_R 30S ribosomal protein S 14.0 78 0.0027 22.4 1.7 18 284-301 35-52 (55)
7 2vog_B BCL-2-modifying factor; 13.6 89 0.003 18.4 1.5 13 361-374 13-25 (27)
8 3lqv_P Splicing factor 3B subu 13.5 1.1E+02 0.0038 20.0 2.1 18 98-115 11-28 (39)
9 1tke_A Threonyl-tRNA synthetas 12.6 2.5E+02 0.0085 25.1 5.2 35 375-411 99-133 (224)
10 3sjr_A Uncharacterized protein 11.0 3E+02 0.01 23.8 4.7 24 85-115 97-120 (175)
No 1
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=3.6e-118 Score=953.84 Aligned_cols=412 Identities=35% Similarity=0.650 Sum_probs=366.8
Q ss_pred CCCcccCCCCcccCCCCCCCCHHHhhhhhcCCC--CccccccccccCCcccCCCCCCCCCCCCCCCC--CCCccccccCC
Q psy8889 1 SRNPFNTLTGVIDANTVYGVKESFARSLRTGHG--GLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRS--NNTQLCFDAGE 76 (461)
Q Consensus 1 preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~--G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~--~~~~~~f~~GD 76 (461)
||||+|++|||||||+||||+++++++||++++ |+||++..+.+.| +.+||...+. ...|... .....||++||
T Consensus 176 ~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G~Lk~~~~~~~~g-~~~lP~~~~~-~~~c~~~~~~~~~~cf~aGD 253 (595)
T 3q9k_A 176 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHG-LAYLPFNNKK-PSPCEFINTTARVPCFLAGD 253 (595)
T ss_dssp CCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTCCBCCCSSCCBTT-BCCCCBCCCS-SCHHHHTCTTTCCCCBCCSS
T ss_pred hHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCceeecccccCCCC-ccCCCCCCCC-CCcccccCCCCCCcccccCC
Confidence 799999999999999999999999999999998 9999876543334 4688876543 2356422 23456999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHhhCcchhhhhcccccCCC
Q psy8889 77 IRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEG 156 (461)
Q Consensus 77 ~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~W~DE~lFqeAR~ivia~~Q~I~y~E~LP~ilG~~~~~~~~l~~~~~g 156 (461)
.|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|||++ |+++ .+
T Consensus 254 ~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~dE~LfQeAR~Iv~A~~Q~Ity~E~LP~ilG~~-~~~~------~~ 326 (595)
T 3q9k_A 254 FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE-MQKW------IP 326 (595)
T ss_dssp TTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-HHHH------SC
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHeeeeeHHHHHHHHhCch-hhhh------CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 6543 23
Q ss_pred CCcCCCCCCCCchHHHHHHHHHhhhhcccchhhhhhhhhhHhHHHHHhcCCCCcchhhhhhhhhhhhhccchhhHhhcCc
Q psy8889 157 YWDGYDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236 (461)
Q Consensus 157 ~~~gY~~~v~p~i~~EFa~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p 236 (461)
.|.||++.++|+|++|| +|||||||||||+.+.++++++.. ......++|++.|++|
T Consensus 327 ~~~gY~~~v~p~i~neF-~aafRfgHsli~~~~~~~~~~~~~----------------------~~~~~~~~L~~~ff~~ 383 (595)
T 3q9k_A 327 PYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENYQP----------------------WGPEAELPLHTLFFNT 383 (595)
T ss_dssp SCCCCCTTSCCCCBTTH-HHHGGGGGGGCCSEEECBCTTSSB----------------------CSTTCEEEGGGGBTCC
T ss_pred CccCCCCCCCCccHHHH-HHHHHhHHhhCcchhhccCccccc----------------------cCCCCceeHHHHhcCh
Confidence 46899999999999999 999999999999988766543311 0012367899999999
Q ss_pred ccccCCCchhHHHhHHhhhhhh--hhhhhhhHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCHHHHHHHhCCCCCCC
Q psy8889 237 YDLYRPGLFDEYLMGLANQVSQ--AMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEFRKFCGLPDAHN 314 (461)
Q Consensus 237 ~~l~~~g~~d~~l~gl~~q~~~--~~d~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~GLp~Yn~~R~~~gl~~~~s 314 (461)
+.+...+++|.+++||+.|+++ ++|..++++|+++||+.....+|+||+|+|||||||||||+||+||++|||++++|
T Consensus 384 ~~~~~~~gid~llrGl~~q~a~~~~~d~~~~~~l~~~Lf~~~~~~~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~s 463 (595)
T 3q9k_A 384 WRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKT 463 (595)
T ss_dssp HHHHTTTCSHHHHHHHHHSEEECCCTTSCSCHHHHTCEECTTSCSEEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCS
T ss_pred HHhhhccchHHHHHHHhhCcccccCCCccCCHHHHHHhccCCCccccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCC
Confidence 9887888899999999999999 88999999999999986544448999999999999999999999999999999999
Q ss_pred hhHhhccCC-HHHHHHHHhhhCCCCcccccceecccCCCCCCCCchHHHHHHHHHHHHHhccCceeecCCCCCCCCCHHH
Q psy8889 315 FEELHGAMA-NYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQ 393 (461)
Q Consensus 315 f~dl~~~~~-~~~~~~l~~lY~~vddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~yen~~~~~~fT~~q 393 (461)
|+||++.++ ++++++|+++|++|||||||||+|+|++++|+.+||||+|||++||.|||+|||||||| |+.||++|
T Consensus 464 f~dl~~~~~~~~~~~~l~~lY~~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gDRf~yen---~~~ft~~q 540 (595)
T 3q9k_A 464 LKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN---PGVFTEKQ 540 (595)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTCTTCTTS---BTTBCHHH
T ss_pred HHHHhhhcCcHHHHHHHHHHhCCccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcCCCeecC---CCcCCHHH
Confidence 999997653 56779999999999999999999999999999999999999999999999999999997 46999999
Q ss_pred HHHHHHhhHhHHhhhcCCCCccccCCceecCCCCCCCCcCCCCCCCCCCCcccccccc
Q psy8889 394 LQEIRKARLARVMCDNTDLVDTIQLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAEFP 451 (461)
Q Consensus 394 l~~Ir~~tl~~iic~n~~~~~~iq~~~f~~~~~~~n~~~~C~~~~~~~~dl~~w~~~~ 451 (461)
|+||||+||++|||+|++ +++||+++|..+ ...|++|+|++ ||.|||++|+|.+
T Consensus 541 l~ei~~~sla~iic~n~~-i~~vq~~~F~~~-~~~n~~v~C~~--ip~~dL~~W~~~~ 594 (595)
T 3q9k_A 541 RDSLQKVSFSRLICDNTH-ITKVPLHAFQAN-NYPHDFVDCST--VDKLDLSPWASRE 594 (595)
T ss_dssp HHHHTTCCHHHHHHHHSS-CCEEESSTTSCC-CTTTTEEEGGG--SCCCCCGGGCCCC
T ss_pred HHHHHhCCHHHHHhcCCC-cccccHhhccCC-CCCCCCccCCC--CCCCChHHhhCCC
Confidence 999999999999999975 899999999965 46799999986 9999999999864
No 2
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=1.4e-117 Score=929.63 Aligned_cols=411 Identities=37% Similarity=0.656 Sum_probs=366.9
Q ss_pred CCCcccCCCCcccCCCCCCCCHHHhhhhhcCCC--CccccccccccCCcccCCCCCCCCCCCCCCCC--CCCccccccCC
Q psy8889 1 SRNPFNTLTGVIDANTVYGVKESFARSLRTGHG--GLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRS--NNTQLCFDAGE 76 (461)
Q Consensus 1 preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~--G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~--~~~~~~f~~GD 76 (461)
||||+|++|||||||+||||+++++++||++++ |+||++..+.+.| +.+||..... ...|... .....||++||
T Consensus 48 ~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~Lk~~~~~~~~g-~~~lP~~~~~-~~~c~~~~~~~~~~cf~~GD 125 (466)
T 1d2v_C 48 IRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNG-RALLPFDNLH-DDPCLLTNRSARIPCFLAGD 125 (466)
T ss_dssp CCCBEECSCSSSSCHHHHCSSHHHHHHHBCCSSSSCCBCCCSSCCBTT-BCCCCBCCCT-TCSGGGGCTTTCCCCBCCSS
T ss_pred HHHHhhccccccccccCcCCCHHHHHHHhccCCCCCeeccCCccCCCC-CcCCCCCCCC-CCcccccccCCCcchhcccC
Confidence 699999999999999999999999999999987 9999875333223 4678876432 3457532 23457999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHhhCcchhhhhcccccCCC
Q psy8889 77 IRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEG 156 (461)
Q Consensus 77 ~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~W~DE~lFqeAR~ivia~~Q~I~y~E~LP~ilG~~~~~~~~l~~~~~g 156 (461)
.|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|||.+.++++ .+
T Consensus 126 ~R~ne~p~l~~lhtlflReHNria~~L~~~nP~W~DE~LFqeAR~Iv~a~~Q~I~~~EyLp~ilG~~~~~~~------~~ 199 (466)
T 1d2v_C 126 TRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY------LP 199 (466)
T ss_dssp TTTTSSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH------SC
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchhhhhc------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888775 24
Q ss_pred CCcCCCCCCCCchHHHHHHHHHhhhhcccchhhhhhhhhhHhHHHHHhcCCCCcchhhhhhhhhhhhhccchhhHhhcCc
Q psy8889 157 YWDGYDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236 (461)
Q Consensus 157 ~~~gY~~~v~p~i~~EFa~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p 236 (461)
++.||++.++|+|++|| +|||||||||||+.+.++++++.. ......++|++.|++|
T Consensus 200 ~~~gy~~~v~p~isnEF-~aafRfgHsli~~~~~~~~~~~~~----------------------~~~~~~~~l~~~~f~~ 256 (466)
T 1d2v_C 200 TYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQP----------------------MEPNPRVPLSRVFFAS 256 (466)
T ss_dssp CCCCCCTTSCCSCBHHH-HHHGGGGGGGCCSEEECBCTTSSB----------------------CSSCSEEEGGGTTTCH
T ss_pred cccCCCCCCCCchhHHH-HHHHhcccccCchhhccccccccc----------------------cCCCCceeHHHHhcCh
Confidence 66899999999999999 999999999999998877643210 0112357889999999
Q ss_pred ccccCCCchhHHHhHHhhhhhh--hhhhhhhHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCHHHHHHHhCCCCCCC
Q psy8889 237 YDLYRPGLFDEYLMGLANQVSQ--AMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEFRKFCGLPDAHN 314 (461)
Q Consensus 237 ~~l~~~g~~d~~l~gl~~q~~~--~~d~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~GLp~Yn~~R~~~gl~~~~s 314 (461)
+.+...+++|.+++||+.|+++ +.|..++++|+++||+.+ ...|+||+|+|||||||||||+||+||++|||++++|
T Consensus 257 ~~~~~~~g~d~~lrgl~~q~a~~~~~d~~l~~~l~~~lf~~~-~~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~t 335 (466)
T 1d2v_C 257 WRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQV-MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPET 335 (466)
T ss_dssp HHHHHTTCHHHHHHHHHHSEEECCBTTBCSCHHHHTCBTGGG-SSSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCS
T ss_pred HHHhhccCchHHHHHHhhCccccccCchhhhHHHHHHhhccc-CccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCC
Confidence 8877778899999999999987 579999999999999865 4579999999999999999999999999999999999
Q ss_pred hhHhhccC-CHHHHHHHHhhhCCCCcccccceecccCCCCCCCCchHHHHHHHHHHHHHhccCceeecCCCCCCCCCHHH
Q psy8889 315 FEELHGAM-ANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQ 393 (461)
Q Consensus 315 f~dl~~~~-~~~~~~~l~~lY~~vddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~yen~~~~~~fT~~q 393 (461)
|+||++.+ +++++++|+++|++|||||||||+|+|++++|+.+||||+|||++||.|||+|||||||| |+.||++|
T Consensus 336 f~dl~~~~~d~~~~~~L~~lY~~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~yen---~~~ft~~q 412 (466)
T 1d2v_C 336 VGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWEN---EGVFSMQQ 412 (466)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHSSGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTTS---TTTSCHHH
T ss_pred HHHHhhccCCHHHHHHHHHHhCCccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCcccccC---CCcccchh
Confidence 99999765 368999999999999999999999999999999999999999999999999999999996 57999999
Q ss_pred HHHHHHhhHhHHhhhcCCCCccccCC-ceecCCCCCCCCcCCCCCCCCCCCccccccc
Q psy8889 394 LQEIRKARLARVMCDNTDLVDTIQLW-PIVLPDHELNPRVPCRSGIIPSIDFSKWAEF 450 (461)
Q Consensus 394 l~~Ir~~tl~~iic~n~~~~~~iq~~-~f~~~~~~~n~~~~C~~~~~~~~dl~~w~~~ 450 (461)
++|||++||++|||+|++ ++.||++ +|..++ ..|++|+|++ ||.|||++|+|.
T Consensus 413 l~ei~~~sl~~iic~n~~-~~~iq~~~~F~~~~-~~n~~~~C~~--ip~~dl~~w~~~ 466 (466)
T 1d2v_C 413 RQALAQISLPRIICDNTG-ITTVSKNNIFMSNS-YPRDFVNCST--LPALNLASWREA 466 (466)
T ss_dssp HHHHTTCCHHHHHHHHSS-CCEEECSCTTTCCS-TTTTEEEGGG--SCCCCCGGGSCC
T ss_pred hHHHHhCCHHHHHHhcCC-CcccCCCccccCCC-CCCCCcCccc--CCCCCchhhccC
Confidence 999999999999999995 8899999 999987 5699999985 999999999974
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=3.8e-94 Score=766.70 Aligned_cols=361 Identities=23% Similarity=0.263 Sum_probs=302.8
Q ss_pred CCcccCCCCcccCCCCCCCCHHHhhhhhcCCCCccccccccccCCcccCCCCCCCCCCCCCC-CCCCCccccccCCccch
Q psy8889 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEGCT-RSNNTQLCFDAGEIRVN 80 (461)
Q Consensus 2 req~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~-~~~~~~~~f~~GD~R~n 80 (461)
.+++|++|||||||+||||+++++++||++++|+||++.. .| +.++|...+.+...+. .......||++||.|+|
T Consensus 187 ~~~~N~~T~~lD~S~vYGs~~~~~~~LR~~~~G~Lk~~~~---~g-~~~~P~~~~~~~~~~~~~~~~~~~cf~~GD~R~n 262 (553)
T 1q4g_A 187 PGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQML---NG-EVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFG 262 (553)
T ss_dssp TTBBSCTTCSSSCHHHHCSSHHHHHHHBCSSTTCBCCEEE---TT-EEECCBTTTSCCCCCCCTTCCGGGSBCCSSTTGG
T ss_pred hhhcccccccccccccCCCCHHHHHhhhcCCCCEecccCC---CC-ccCCCccCCCCCcccCCCCCCchhccccCccccC
Confidence 4789999999999999999999999999999999998643 12 3466654322111111 11225679999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHhhCcchhhhhcccccCCCCCcC
Q psy8889 81 EQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDG 160 (461)
Q Consensus 81 e~p~l~~lhtlf~ReHNria~~L~~~np~W~DE~lFqeAR~ivia~~Q~I~y~E~LP~ilG~~~~~~~~l~~~~~g~~~g 160 (461)
|+|+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|+|...+..++......++
T Consensus 263 e~p~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv~a~~Q~I~~~EyLp~ilg~~~~~~~dp~~~~~~~--- 339 (553)
T 1q4g_A 263 LLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQ--- 339 (553)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSC---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCcccccCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999998755443222111111
Q ss_pred CCCCCCCchHHHHHHHHHhhhhcccchhhhhhhhhhHhHHHHHhcCCCCcchhhhhhhhhhhhhccchhhHhhcCccccc
Q psy8889 161 YDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLY 240 (461)
Q Consensus 161 Y~~~v~p~i~~EFa~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~l~ 240 (461)
-.++|+|++||++ ||| ||||||+.+.+. ...++|++.|++|..+.
T Consensus 340 --~~~~~~is~EF~~-ayR-~Hslip~~~~~~-------------------------------~~~~~l~~~ff~~~~~~ 384 (553)
T 1q4g_A 340 --FQYRNRIAMEFNQ-LYH-WHPLMPDSFRVG-------------------------------PQDYSYEQFLFNTSMLV 384 (553)
T ss_dssp --CCCCCCCBHHHHH-HTC-CGGGSCSSEEET-------------------------------TEEECHHHHTTCSSHHH
T ss_pred --cccCcchhHHHHH-Hhc-ccccCCcccccC-------------------------------CCcccHHHHhcCchhhh
Confidence 2467899999975 699 599999965321 12467888999986554
Q ss_pred CCCchhHHHhHHhhhhhhhhhhhhhHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCHHHHHHHhCCCCCCChhHhhc
Q psy8889 241 RPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEFRKFCGLPDAHNFEELHG 320 (461)
Q Consensus 241 ~~g~~d~~l~gl~~q~~~~~d~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~GLp~Yn~~R~~~gl~~~~sf~dl~~ 320 (461)
.+++|.+++||+.|+++++|. +++. ...++||+++|||||||||||+||+||++|||+++++|+||++
T Consensus 385 -~~g~~~ll~g~~~q~a~~~~~-----~~n~------~~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~ 452 (553)
T 1q4g_A 385 -DYGVEALVDAFSRQPAGRIGG-----GRNI------DHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG 452 (553)
T ss_dssp -HHCHHHHHHHHHHSBCBCSSS-----SSCB------CTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS
T ss_pred -cccHHHHHHHhhhchhhcccc-----cccC------cHHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcC
Confidence 466999999999999999841 1111 2357999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHhhhCCCCcccccceecccCCCCCCCCchHHHHHHHH-HHHHHh---ccCceeecCCCCCCCCCHHHHHH
Q psy8889 321 AMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSCIIAT-QFSYAR---RGDRFWYELPNQPSSFTPAQLQE 396 (461)
Q Consensus 321 ~~~~~~~~~l~~lY~~vddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~-qf~rl~---~gDRf~yen~~~~~~fT~~ql~~ 396 (461)
+++++++|+++|++|||||||||+|+|++++|+++||||+|||++ ||.+++ +|||||| +|+.||++|+.|
T Consensus 453 --d~~~~~~L~~lY~~~ddiDL~vG~laE~~~~G~~~Gpt~~~ii~~~~~~~l~~~~~~d~~~~----~~~~ft~~ql~e 526 (553)
T 1q4g_A 453 --EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYW----KASTFGGEVGFN 526 (553)
T ss_dssp --SSHHHHHHHHHHSSGGGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTC----SGGGGTSHHHHH
T ss_pred --CHHHHHHHHHHhcChhhccccccccccccCCCCCccHHHHHHHHHHHHHHHhhCcCCCcccc----CCCCcCHHHHHH
Confidence 479999999999999999999999999999999999999999999 799997 5999888 367999999999
Q ss_pred HHH-hhHhHHhhhcCCCCccccCCceecCC
Q psy8889 397 IRK-ARLARVMCDNTDLVDTIQLWPIVLPD 425 (461)
Q Consensus 397 Ir~-~tl~~iic~n~~~~~~iq~~~f~~~~ 425 (461)
|+| +||++|||+|++ .||.++|.+|+
T Consensus 527 i~~~~sla~iic~n~~---~~p~~~F~~p~ 553 (553)
T 1q4g_A 527 LVKTATLKKLVCLNTK---TCPYVSFHVPD 553 (553)
T ss_dssp HHHTCCHHHHHHTTSS---SCCCCCSBCCC
T ss_pred HHHhCCHHHHHHHcCC---CCCcccccCCC
Confidence 977 599999999997 79999999874
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=1.8e-93 Score=761.39 Aligned_cols=358 Identities=22% Similarity=0.321 Sum_probs=299.7
Q ss_pred CcccCCCCcccCCCCCCCCHHHhhhhhcCCCCccccccccccCCcccCCCCCCCCCCCCCCCC--CCCccccccCCccch
Q psy8889 3 NPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRS--NNTQLCFDAGEIRVN 80 (461)
Q Consensus 3 eq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~--~~~~~~f~~GD~R~n 80 (461)
.+.|++|||||||+||||+++++++||++++|+||++.. +| +.++|...+.+ ..|... .+...||++||.|+|
T Consensus 188 ~~~n~~t~~lD~S~IYGss~~~~~~LR~~~~G~Lk~~~~---~g-~~~pP~~~~~~-~~~~~~~~~~~~~cf~~GD~R~n 262 (587)
T 3nt1_A 188 GFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVI---GG-EVYPPTVKDTQ-VEMIYPPHIPENLQFAVGQEVFG 262 (587)
T ss_dssp TBBSCTTCSCCCHHHHCSSHHHHHHHBCSSTTCBCCEEE---TT-EEECCBHHHHC-CCCCCCTTSCGGGCBCCSSTTTT
T ss_pred ccccCccceeeeccCCCCCHHHHHhccCCCCCeeeeecC---CC-ccCCCCCCCcc-cccccCCCCCcccccccCCcccc
Confidence 357899999999999999999999999999999998642 23 35666543221 123221 235679999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhHhhCcchhhhhcccccCCCCCcC
Q psy8889 81 EQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDG 160 (461)
Q Consensus 81 e~p~l~~lhtlf~ReHNria~~L~~~np~W~DE~lFqeAR~ivia~~Q~I~y~E~LP~ilG~~~~~~~~l~~~~~g~~~g 160 (461)
|+|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|+|.+.+..|+..+...
T Consensus 263 e~pgL~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv~A~~Q~Ity~EyLP~ilG~~~~~~~dp~~~~~----- 337 (587)
T 3nt1_A 263 LVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFN----- 337 (587)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTT-----
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhheeeeHHHHHHHhcCcchhcccCcccccC-----
Confidence 999999999999999999999999999999999999999999999999999999999999988766555433221
Q ss_pred CCCCCCCchHHHHHHHHHhhhhcccchhhhhhhhhhHhHHHHHhcCCCCcchhhhhhhhhhhhhccchhhHhhcCccccc
Q psy8889 161 YDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLY 240 (461)
Q Consensus 161 Y~~~v~p~i~~EFa~aa~RfgHs~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~l~ 240 (461)
+...++|+|++||++| | |||||||+.+.+. ...++|+++|++|..+.
T Consensus 338 ~~~~~~~~is~eF~~a-~-~~Hslip~~~~~~-------------------------------~~~~~l~~~ff~p~~~~ 384 (587)
T 3nt1_A 338 QQFQYQNRIASEFNTL-Y-HWHPLLPDTFNIE-------------------------------DQEYSFKQFLYNNSILL 384 (587)
T ss_dssp SCCCSCCCCBHHHHHH-T-CCGGGSCSSEEET-------------------------------TEEECHHHHTTCTHHHH
T ss_pred CCCCcCchHHHHHHHH-H-hccccCCcccccC-------------------------------CCcccHHHHhcCccccc
Confidence 2224567899999754 6 5699999865321 12467888999886543
Q ss_pred CCCchhHHHhHHhhhhhhhhhhhhhHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCHHHHHHHhCCCCCCChhHhhc
Q psy8889 241 RPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEFRKFCGLPDAHNFEELHG 320 (461)
Q Consensus 241 ~~g~~d~~l~gl~~q~~~~~d~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~GLp~Yn~~R~~~gl~~~~sf~dl~~ 320 (461)
.+++|.+++||+.|+++++|.. ++ + ...++||+|+|||||||||||+||+||++|||++++||+||++
T Consensus 385 -~~gid~llrgl~~q~a~~~~~~-----~n--~----~~~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~ 452 (587)
T 3nt1_A 385 -EHGLTQFVESFTRQIAGRVAGG-----RN--V----PIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG 452 (587)
T ss_dssp -HHHHHHHHHHHHHSBCBCSSSS-----SC--B----CGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS
T ss_pred -hhhHHHHHHHHHHhhhhccccc-----cc--C----chHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCC
Confidence 4679999999999999988631 11 1 2357899999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHhhhCCCCcccccceecccCCCCCCCCchHHHHHHHHHH------HHHhccCceeecCCCCCCCCCHHH-
Q psy8889 321 AMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSCIIATQF------SYARRGDRFWYELPNQPSSFTPAQ- 393 (461)
Q Consensus 321 ~~~~~~~~~l~~lY~~vddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf------~rl~~gDRf~yen~~~~~~fT~~q- 393 (461)
+ ++++++|+++|++|||||||||+|+|++++|+++||||+|| +.|| .+++.||||| +|++||.+|
T Consensus 453 ~--~~~~~~L~~lY~~~ddIDL~vGglaE~~~pG~~vGpTf~ci-~~qf~l~~~~~~~r~gDrfw-----~~~~Ft~~qg 524 (587)
T 3nt1_A 453 E--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVEL-GAPFSLKGLMGNPICSPQYW-----KPSTFGGEVG 524 (587)
T ss_dssp S--SHHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCHHHHHH-HHHHHHHHHHTSGGGSTTTS-----SGGGGTSHHH
T ss_pred C--HHHHHHHHHHhCCHhheeeecccccccCCCCccHHHHHHHH-HHHHHHHHHhcCcccCCccc-----CcCccChHHH
Confidence 5 78999999999999999999999999999999999999999 6674 7899999999 356999988
Q ss_pred HHHHHHhhHhHHhhhcCCCCccccCCceecCCC
Q psy8889 394 LQEIRKARLARVMCDNTDLVDTIQLWPIVLPDH 426 (461)
Q Consensus 394 l~~Ir~~tl~~iic~n~~~~~~iq~~~f~~~~~ 426 (461)
+++||++||++|||+|++. ||.++|.+|+.
T Consensus 525 l~~I~~~sL~~lic~N~~~---~p~~~F~~p~~ 554 (587)
T 3nt1_A 525 FKIINTASIQSLICNNVKG---CPFTSFNVQDP 554 (587)
T ss_dssp HHHHHTCCHHHHHHHHSTT---CCCCCSBCC--
T ss_pred HHHHHHCCHHHHHHhCCCC---CCcceeECCCc
Confidence 8999999999999999985 99999999975
No 5
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=21.69 E-value=21 Score=25.08 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy8889 115 LFQEARRIIIAEIQHITYN 133 (461)
Q Consensus 115 lFqeAR~ivia~~Q~I~y~ 133 (461)
-||.+|++ +-..|+|+++
T Consensus 4 ~Fqv~Rr~-~NklQ~ilFn 21 (52)
T 2ju0_B 4 GFQVARRV-LNNLQTNLFN 21 (52)
T ss_dssp TTHHHHHH-HHHHTCCSSC
T ss_pred hhHHHHHH-HHHHHHHHhC
Confidence 48999996 5677888765
No 6
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=13.99 E-value=78 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCCCCHH
Q psy8889 284 LVSFNIQRGRDFGLPGYM 301 (461)
Q Consensus 284 L~a~nIqRgRd~GLp~Yn 301 (461)
..+..|.|+|.+||=||.
T Consensus 35 ~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 35 QLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 456679999999998885
No 7
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=13.56 E-value=89 Score=18.45 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhc
Q psy8889 361 FSCIIATQFSYARR 374 (461)
Q Consensus 361 ~~~ii~~qf~rl~~ 374 (461)
..| |++||.|+..
T Consensus 13 LQc-I~DQFHR~h~ 25 (27)
T 2vog_B 13 LQC-IADQFHRLHT 25 (27)
T ss_dssp HHH-HHHHHHHHHC
T ss_pred HHH-HHHHHHHHHh
Confidence 344 6789988763
No 8
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=13.54 E-value=1.1e+02 Score=20.00 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCCCCchhh
Q psy8889 98 RVAIELAKVNPHWDDETL 115 (461)
Q Consensus 98 ria~~L~~~np~W~DE~l 115 (461)
|+-+++...|--|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 456678888989999986
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=12.59 E-value=2.5e+02 Score=25.15 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=26.6
Q ss_pred cCceeecCCCCCCCCCHHHHHHHHHhhHhHHhhhcCC
Q psy8889 375 GDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTD 411 (461)
Q Consensus 375 gDRf~yen~~~~~~fT~~ql~~Ir~~tl~~iic~n~~ 411 (461)
+|+|+|+-.. +..+|+++|++|.+. |.+||-.|.+
T Consensus 99 ~~g~y~d~~~-~~~~t~edl~~IE~~-m~~iI~~~~p 133 (224)
T 1tke_A 99 DNGFYYDVDL-DRTLTQEDVEALEKR-MHELAEKNYD 133 (224)
T ss_dssp TTEEEEEEEC-SSCCCHHHHHHHHHH-HHHHHTTCCB
T ss_pred CCeEEEEEeC-CCCCCHHHHHHHHHH-HHHHHhCCCC
Confidence 4567777432 246999999999987 8888888776
No 10
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=11.01 E-value=3e+02 Score=23.77 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q psy8889 85 LCVMHTLWAREHNRVAIELAKVNPHWDDETL 115 (461)
Q Consensus 85 l~~lhtlf~ReHNria~~L~~~np~W~DE~l 115 (461)
+.++-|.|+--| +..||+|+.|++
T Consensus 97 IVsfaT~FF~~y-------q~qhPd~~~ee~ 120 (175)
T 3sjr_A 97 LLLGMEILMELY-------RQQHPDWTAPAI 120 (175)
T ss_dssp HHHHHHHHHHHH-------HHTCSSSCHHHH
T ss_pred HHHHHHHHHHHH-------HHhCCCCCHHHH
Confidence 445556665443 678999987653
Done!