RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8889
(461 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 531 bits (1370), Expect = 0.0
Identities = 201/408 (49%), Positives = 258/408 (63%), Gaps = 30/408 (7%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEG 61
R N +T +D + VYG E AR LRT GGLL+ ++LLP ++ P +
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKGGLLKTQRRNG----RELLP-FSNNPTDD 55
Query: 62 CTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARR 121
C+ S+ + CF AG+ RVNEQ L MHTL+ REHNR+A EL K+NPHWDDE LFQEAR+
Sbjct: 56 CSLSSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEARK 115
Query: 122 IIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIG 181
I+IA++QHITYNEF+P LLG+E+M KFGL L GY++GYD +V+P+I++ F+AAAFR G
Sbjct: 116 IVIAQMQHITYNEFLPILLGRELMEKFGLYLLTSGYFNGYDPNVDPSILNEFAAAAFRFG 175
Query: 182 HTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYR 241
H+ +P ER + ++ + L DL P LY
Sbjct: 176 HSLVPGTFERLDENYRPQ------------GSVN-------------LHDLFFNPDRLYE 210
Query: 242 PGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYM 301
G D L GLA Q +Q +D T E+T F + G+ FGLDL + NIQRGRD GLPGY
Sbjct: 211 EGGLDPLLRGLATQPAQKVDRFFTDELTTHFFFRGGNPFGLDLAALNIQRGRDHGLPGYN 270
Query: 302 EFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVF 361
++R+FCGLP A F++L G M+ TI K +Y D+DL+ GG+SEKP+PG L GP F
Sbjct: 271 DYREFCGLPRATTFDDLLGIMSPETIQKLRRLYKSVDDIDLYVGGLSEKPVPGGLVGPTF 330
Query: 362 SCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDN 409
+CII QF RRGDRFWYE QPSSFTPAQL EIRK LAR++CDN
Sbjct: 331 ACIIGEQFRRLRRGDRFWYENGGQPSSFTPAQLNEIRKVSLARIICDN 378
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 433 bits (1116), Expect = e-148
Identities = 180/418 (43%), Positives = 235/418 (56%), Gaps = 42/418 (10%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEG 61
R N LT +D + VYG E A LRT G L++N F K LLP P G
Sbjct: 140 REQINQLTSYLDLSQVYGSSEEEADKLRTFKDGKLKVNGEFPPPNGKGLLPAPPPGPS-G 198
Query: 62 CTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARR 121
C CF AG+ RVNE L +HTL+ REHNR+A EL +NPHW DE LFQEAR
Sbjct: 199 CLS------CFLAGDSRVNENPGLTALHTLFLREHNRIADELKALNPHWSDEKLFQEARL 252
Query: 122 IIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIG 181
I+IA+ Q ITYNE++P LLG ++M L Y+ GYD +V+P+I + F+ AA+R G
Sbjct: 253 IVIAQYQKITYNEYLPALLGPDLMRANWL----LLYYTGYDPNVDPSISNEFATAAYRFG 308
Query: 182 HTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYR 241
H+ +P +ER + + IA L D P +
Sbjct: 309 HSLIPPGLERLDE-FRTIAPEIP------------------------LHDTFFNPSRILE 343
Query: 242 PGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVG-SHFGLDLVSFNIQRGRDFGLPGY 300
G+ D L GLA+Q ++ +D+S++ E+ N LF GLDL + NIQRGRD GLP Y
Sbjct: 344 EGI-DPLLRGLASQPAELLDNSLSDELRNRLFGPRNFPGSGLDLAALNIQRGRDHGLPPY 402
Query: 301 MEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGSLAGP 359
E+R+FCGL A +FE+L + + + K +Y P D+DLW GG++EKP+PG L GP
Sbjct: 403 NEYRRFCGLKPATSFEDLTDEIGDEELAEKLKELYGDPDDIDLWVGGLAEKPVPGGLVGP 462
Query: 360 VFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTIQ 417
F+CIIA QF R GDRFWYE P FT QL+EIRK LARV+CDNT + +Q
Sbjct: 463 TFACIIAEQFLRLRDGDRFWYEN---PGVFTGEQLEEIRKTTLARVICDNTPGITRVQ 517
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 381 bits (980), Expect = e-129
Identities = 181/444 (40%), Positives = 240/444 (54%), Gaps = 49/444 (11%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
R N LT IDA+ VYG + A LR GLLR+ E G K LLP++ D P
Sbjct: 37 REQINQLTSYIDASNVYGSSDEEALELRDLASDRGLLRVGIV-SEAG-KPLLPFERDSPM 94
Query: 60 EGCTRSN-NTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQE 118
+ N + CF AG+ R NEQL L MHTLW REHNR+A EL ++NPHWD ET++ E
Sbjct: 95 DCRRDPNESPIPCFLAGDHRANEQLGLTSMHTLWLREHNRIASELLELNPHWDGETIYHE 154
Query: 119 ARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF 178
R+I+ A++QHITY+ ++P +LG M G + GY+ +VNP+I + F+ AAF
Sbjct: 155 TRKIVGAQMQHITYSHWLPKILGPVGMEML-------GEYRGYNPNVNPSIANEFATAAF 207
Query: 179 RIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYD 238
R GHT + + R + + I GH LP H KA F A PY
Sbjct: 208 RFGHTLINPILFRLDEDFQPIPE----GH--LPLH-----KA--FFA----------PYR 244
Query: 239 LYRPGLFDEYLMGLANQVSQAM-----DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGR 293
L G D L GL + A D + E+T LF+ LDL + NIQRGR
Sbjct: 245 LVNEGGIDPLLRGL---FATAAKDRVPDQLLNTELTEKLFEMAHE-VALDLAALNIQRGR 300
Query: 294 DFGLPGYMEFRKFCGLPDAHNFEELHGAMAN-YTIGKYSSIYTGPGDVDLWSGGVSEKPL 352
D GLPGY ++RKFC L A FE+L + N K +Y PG++DL+ GG+ E L
Sbjct: 301 DHGLPGYNDYRKFCNLSVAETFEDLKNEIKNDDVREKLKRLYGHPGNIDLFVGGILEDLL 360
Query: 353 PGSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDL 412
PG+ GP +C++A QF R GDRFWYE P F+PAQL +I+K LARV+CDN D
Sbjct: 361 PGARVGPTLACLLAEQFRRLRDGDRFWYE---NPGVFSPAQLTQIKKTSLARVLCDNGDN 417
Query: 413 VDTIQLWPIVLPDHELNPRVPCRS 436
+ +Q ++P + + V C S
Sbjct: 418 ITRVQEDVFLVPGNP-HGYVSCES 440
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 322 bits (828), Expect = e-105
Identities = 176/461 (38%), Positives = 243/461 (52%), Gaps = 54/461 (11%)
Query: 1 SRNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIP 58
R N LT IDA+TVYG + ARSLR + GLLR+N F + G +D LP++ +
Sbjct: 147 PREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDSG-RDYLPFQPEEV 205
Query: 59 DEGCTRSNNTQL--CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLF 116
N + CF AG+ R +E L L HTLW REHNR+A L +NPHWD E ++
Sbjct: 206 SSCNPDPNGGERVPCFLAGDGRASEVLTLTASHTLWLREHNRLARALKSINPHWDGEQIY 265
Query: 117 QEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAA 176
QEAR+I+ A Q IT+ +++P +LG E +++G GY++GYD +VNP + + FS A
Sbjct: 266 QEARKIVGALHQIITFRDYIPKILGPEAFDQYG------GYYEGYDPTVNPTVSNVFSTA 319
Query: 177 AFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRP 236
AFR GH + + R+ F + H + L D P
Sbjct: 320 AFRFGHATIHPTV-------------RRLDENF---------QEHPVLPNLALHDAFFSP 357
Query: 237 YDLYRPGLFDEYLMGLANQVS--QAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRD 294
+ L R G D + GL + DD + +E+T LF S LDL S N+QRGRD
Sbjct: 358 WRLVREGGLDPVIRGLIGGPAKLVTPDDLMNEELTEKLFVLSNSS-TLDLASLNLQRGRD 416
Query: 295 FGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLP 353
GLPGY ++R+FCGLP +L A+A+ + K +Y P ++D+W GG++E LP
Sbjct: 417 HGLPGYNDWREFCGLPRLATPADLATAIADQAVADKILDLYKHPDNIDVWLGGLAEDFLP 476
Query: 354 GSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLV 413
G+ GP+F+C+I Q R GDRFW+E N FT AQ +E+RK L+RV+CDNT L
Sbjct: 477 GARTGPLFACLIGKQMKALRDGDRFWWENSN---VFTDAQRRELRKHSLSRVICDNTGLT 533
Query: 414 DTIQLWPIVLPDHELNPRVP-----CRSGIIPSIDFSKWAE 449
V PD + P C S IP I+ W E
Sbjct: 534 R-------VPPDAFQLGKFPEDFVSCDS--IPGINLEAWRE 565
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 313 bits (805), Expect = e-103
Identities = 155/418 (37%), Positives = 212/418 (50%), Gaps = 53/418 (12%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEG 61
R N +T ID + VYG E A +LR+ GG L+ + DLLP+
Sbjct: 48 REQINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANAG----DLLPFNEAGLPND 103
Query: 62 CTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARR 121
L F AG++R NE L +HTL+ REHNR+A ELA+ NP DE ++Q AR
Sbjct: 104 NGGVPADDL-FLAGDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEEIYQAARA 162
Query: 122 IIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIG 181
I+IAEIQ ITYNEF+P LLG+ + + GYD++VNP I + FS AA+R G
Sbjct: 163 IVIAEIQAITYNEFLPALLGENALPAY----------SGYDETVNPGISNEFSTAAYRFG 212
Query: 182 HTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYR 241
H+ L + + R + T + L D P +L
Sbjct: 213 HSMLSSELLRGDEDGTEA------------TSLA-------------LRDAFFNPDELEE 247
Query: 242 PGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYM 301
G+ D L GLA+QV+Q +D I +V N LF G+ G DL + NIQRGRD GLP Y
Sbjct: 248 NGI-DPLLRGLASQVAQEIDTFIVDDVRNFLFGPPGAG-GFDLAALNIQRGRDHGLPSYN 305
Query: 302 EFRKFCGLPDAHNFEELHG--AMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGP 359
+ R+ GLP +F ++ +A + +S+Y +DLW GG++E + G L G
Sbjct: 306 QLREALGLPAVTSFSDITSDPDLAA----RLASVYGDVDQIDLWVGGLAEDHVNGGLVGE 361
Query: 360 VFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTIQ 417
FS IIA QF+ R GDRF+YE + ++ +I LA V+ NTD VD IQ
Sbjct: 362 TFSTIIADQFTRLRDGDRFFYENDD----LLLDEIADIENTTLADVIRRNTD-VDDIQ 414
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 301 bits (772), Expect = 5e-99
Identities = 137/406 (33%), Positives = 191/406 (47%), Gaps = 38/406 (9%)
Query: 5 FNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEGCTR 64
N T +D +++YG AR+LRT GGLL+ N +LLP+ P T
Sbjct: 2 LNARTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGPSYGTELLPFNNPNPSM-GTI 60
Query: 65 SNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIII 124
CF AG+ RVNE L+L +HTL+ REHNR+A L K +P WDDE L+QEAR I+I
Sbjct: 61 GLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEARLIVI 120
Query: 125 AEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIGHTF 184
A+ Q ITYNE++P +LGK + L L D V P ++ F AA+R GH+
Sbjct: 121 AQYQLITYNEYLPAILGKFTDPRDDLVLLF------PDPDVVPYVLSEFFTAAYRFGHSL 174
Query: 185 LPTHIERWS-KAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYRPG 243
+P ++R + F + LSD
Sbjct: 175 VPEGVDRIDENGQPKEIPDVPLKDFFF------------NTSRSILSD-----------T 211
Query: 244 LFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEF 303
D L G Q + +D ++ LF + GLDL + NIQRGRD GLP Y E
Sbjct: 212 GLDPLLRGFLRQPAGLIDQNVD--DVMFLFGPL-EGVGLDLAALNIQRGRDLGLPSYNEV 268
Query: 304 RKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSC 363
R+F GL +F+++ +Y P DVDLW GG+ EK +P + G + +
Sbjct: 269 RRFIGLKPPTSFQDILTDPELAKKLA--ELYGDPDDVDLWVGGLLEKKVPPARLGELLAT 326
Query: 364 IIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDN 409
II QF GDRF+Y N +L+++ LA ++C N
Sbjct: 327 IILEQFKRLVDGDRFYYVNYNPFGKSGKEELEKLIS--LADIICLN 370
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 298 bits (766), Expect = 1e-97
Identities = 151/415 (36%), Positives = 223/415 (53%), Gaps = 41/415 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLR--TGHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
R N LT +DA+ VYG + S A+ LR T GLL +N F + GL LLP++ D
Sbjct: 12 REQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGL-ALLPFENLHND 70
Query: 60 EGCTRSNNTQL-CFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQE 118
R+ + + CF AG+ RV+E L +HTL REHNR+A EL ++NPHWD ETL+QE
Sbjct: 71 PCALRNTSANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNPHWDGETLYQE 130
Query: 119 ARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF 178
AR+I+ A +Q ITY +++P +LG++ + + GY++SV+P I + F+ A
Sbjct: 131 ARKIVGAMVQIITYRDYLPLILGEDAAARLPP-------YRGYNESVDPRIANVFTTAFR 183
Query: 179 RIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYD 238
R GHT + + R + ++ + +P H F A +
Sbjct: 184 R-GHTTVQPFVFRLDENYQPHPP-----NPQVPLH-------KAFFA----------SWR 220
Query: 239 LYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFG 296
+ R G D L GL ++ + + E+ LF++ GLDL + N+QRGRD G
Sbjct: 221 IIREGGIDPILRGLMATPAKLNNQNQMLVDELRERLFQQT-KRMGLDLAALNLQRGRDHG 279
Query: 297 LPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGS 355
LPGY +R+FCGL N EL + N + K +Y P ++D+W GGV+E +PG
Sbjct: 280 LPGYNAWRRFCGLSQPQNLAELAAVLNNTVLARKLLDLYGTPDNIDIWIGGVAEPLVPGG 339
Query: 356 LAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNT 410
GP+ +C+I+ QF R GDRFW+E P FT Q + +R L+R++CDNT
Sbjct: 340 RVGPLLACLISRQFRRIRDGDRFWWE---NPGVFTEEQRESLRSVSLSRIICDNT 391
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 205 bits (525), Expect = 2e-60
Identities = 130/426 (30%), Positives = 197/426 (46%), Gaps = 59/426 (13%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNP--HFQEYGLKDLLPYKTDIPD 59
R N +T ID +++YG ++++ +LR+ GG L F L P
Sbjct: 131 REQLNEVTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFPRRNTNRLPLANPPPPS 190
Query: 60 EGCTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEA 119
TR + F G R NE L LW R HN +A +A+ +P W DE +FQEA
Sbjct: 191 YHGTRGP--ERLFKLGNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQEA 248
Query: 120 RRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFR 179
R+ +IA Q+I + E++P LLG V + GY V+P I F AAAFR
Sbjct: 249 RKWVIATYQNIVFYEWLPALLGTNVPP-----------YTGYKPHVDPGISHEFQAAAFR 297
Query: 180 IGHTFLPTHIERWSKAHKFIAA--------AFRIGHTFLPTHIERWSKAHKFIAAKKLSD 231
GHT +P + R ++ F A R+ +T+ W+ + SD
Sbjct: 298 FGHTLVPPGVYRRNRQCNFREVLTTSGGSPALRLCNTY-------WNSQEPLLK----SD 346
Query: 232 LIRRPYDLYRPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGS-HF-GLDLVSFNI 289
+ DE L+G+A+Q+++ D+ I +++ + LF G F DL++ NI
Sbjct: 347 I-------------DELLLGMASQIAEREDNIIVEDLRDYLF---GPLEFSRRDLMALNI 390
Query: 290 QRGRDFGLPGYMEFRKFCGLPDAHNFEELHGAMANYT---IGKYSSIYTG-PGDVDLWSG 345
QRGRD GLP Y R+ GLP + +++ + + + + +Y +DL+ G
Sbjct: 391 QRGRDHGLPDYNTAREAFGLPPRTTWSDINPDLFKKDPELLERLAELYGNDLSKLDLYVG 450
Query: 346 GVSEKPLPGSLAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARV 405
G+ E G G +F II QF R GDRFW+E + FT +++EIR L V
Sbjct: 451 GMLE--SKGGGPGELFRAIILDQFQRLRDGDRFWFE-NVKNGLFTAEEIEEIRNTTLRDV 507
Query: 406 MCDNTD 411
+ TD
Sbjct: 508 ILAVTD 513
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 132 bits (335), Expect = 1e-33
Identities = 125/484 (25%), Positives = 172/484 (35%), Gaps = 142/484 (29%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLR--------TGH------GGLLRMNPHFQE--- 44
N T +D N YG S LR TG GG R F +
Sbjct: 81 GEHTNVTTPFVDQNQTYGSHASHQVFLREYDGDGVATGRLLEGATGGSARTGHAFLDDIA 140
Query: 45 ------YGLKDLLPYKTDIPD-EGCTRSNNTQLC---FDAGEIRVNEQLVLCVMHTLWAR 94
GL L T+ P G S + +L F AG+ RVNE + L +HT++ R
Sbjct: 141 HNAAPKGGLGSLRDNPTEDPPGPGAPGSYDNELLDAHFVAGDGRVNENIGLTAVHTVFHR 200
Query: 95 EHNRV----------AIELAKVNPH------WDDETLFQEARRIIIAEIQHITYNEFVPT 138
EHNR+ + +LA N WD E LFQ AR + QH+ + EF
Sbjct: 201 EHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERLFQAARFANEMQYQHLVFEEFARR 260
Query: 139 LLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKF 198
+ + G ++GY+ +NP+I F+ A +R GH+ L + R
Sbjct: 261 IQPG---------IDGFGSFNGYNPEINPSISAEFAHAVYRFGHSMLTETVTR------- 304
Query: 199 IAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYRPGLFDEY-----LMGLA 253
I G L D P L+ E L G+
Sbjct: 305 IGPDADEG----------------LDNQVGLIDAFLNPVAFLPATLYAEEGAGAILRGMT 348
Query: 254 NQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEFRK-------- 305
QV +D+ +T + N L VG LDL + NI RGRD GLP E R
Sbjct: 349 RQVGNEIDEFVTDALRNNL---VG--LPLDLAALNIARGRDTGLPTLNEARAQLFAATGD 403
Query: 306 -FCGLP-------DAH--NFEELHGAMANY----TIGKYSSIY----------------- 334
P A N E L +A Y TI +++
Sbjct: 404 TILKAPYESWNDFGARLKNPESLINFIAAYGTHLTITGATTLAAKRAAAQDLVDGGDGAP 463
Query: 335 -----------------TGPGDVDLWSGGVSEKPLP-GSLAGPVFSCIIATQFSYARRGD 376
G +VDLW GG++EK +P G + G F+ + Q + GD
Sbjct: 464 ADRADFMNAAGAGAGTVKGLDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGD 523
Query: 377 RFWY 380
RF+Y
Sbjct: 524 RFYY 527
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 88.1 bits (219), Expect = 1e-18
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 19/146 (13%)
Query: 4 PFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPH---------FQEYGLKDLLPYK 54
NT ID + +YG+ E+ +LR G L+ F++ G+K P
Sbjct: 123 RRNTSNHGIDLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPL 182
Query: 55 TDIPDEGCTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDET 114
+ T +L F G R N L +++T+W REHNRV L K +P WDDE
Sbjct: 183 VPPLGDELTPEREAKL-FAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDER 241
Query: 115 LFQEARRIIIAE---------IQHIT 131
LFQ AR I+I E I H++
Sbjct: 242 LFQTARNILIGELIKIVIEDYINHLS 267
Score = 45.3 bits (108), Expect = 5e-05
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 21/136 (15%)
Query: 289 IQRGRDFGLPGYMEFRKFCGLPDAHNFEELHG--AMANYTIGKYSSIYTGPGDVDLWSGG 346
I++GR L + ++RK GLP +FEEL G +A + +Y V+ + G
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEELTGDPEVA----AELEELYGDVDAVEFYVGL 420
Query: 347 VSEKPLPGSLAGPVFSCIIATQFSYARRG-------DRFWYELPNQPSSFTPAQLQEIRK 399
+E P P S P+ ++A A G + +PS+F +I K
Sbjct: 421 FAEDPRPNSPLPPLMVEMVA---PDAFSGALTNPLLSPEVW----KPSTFGGEGGFDIVK 473
Query: 400 -ARLARVMCDNTDLVD 414
A L ++C N
Sbjct: 474 TATLQDLVCRNVKGGC 489
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 65.0 bits (159), Expect = 3e-11
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 31/154 (20%)
Query: 6 NTLTGVIDANTVYGVKESFARSLRTGH-GGLLRMNPHFQEYGLKDLLP--YKTDIPDEGC 62
NT T D + +YG E + LRT G L+++ LLP T +P G
Sbjct: 88 NTNTHWWDGSQIYGSTEEAQKRLRTFPPDGKLKLDA-------DGLLPVDEHTGLPLTGF 140
Query: 63 TRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRI 122
N + L ++HTL+ REHN + L K P W DE LF +AR +
Sbjct: 141 ND---------------NWWVGLSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKARLV 185
Query: 123 IIAEIQHITYNEFVPTLLGKEVM------NKFGL 150
A + I E+ P +L + N +GL
Sbjct: 186 NAALMAKIHTVEWTPAILAHPTLEIAMRANWWGL 219
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 282 LDLVSFNIQRGRDFGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPG--D 339
+DL + +I R R+ G+P Y EFR+ LP A +FE+L G + +Y G
Sbjct: 340 IDLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDLTGDEE--VAAELREVY-GGDVEK 396
Query: 340 VDLWSGGVSEKPLPG 354
VDL G ++E PG
Sbjct: 397 VDLLVGLLAEPLPPG 411
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 52.0 bits (125), Expect = 4e-07
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 78 RVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIAEIQHITYNEFVP 137
R +E L++ +H + R HN V L D+ LF+EARR++ Q + N+F+P
Sbjct: 150 RNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGDE--LFEEARRLVRWHYQWLVLNDFLP 207
Query: 138 TLLGKEVMNKFGLTLQKE-GYWDGYDDSVNPNIIDAFSAAAFRIGHT 183
+ +V++ L ++ + + ++ FS AA+R GH+
Sbjct: 208 RICDPDVVDDV---LANGRRFYRFFREGKPFMPVE-FSVAAYRFGHS 250
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 44.4 bits (105), Expect = 9e-05
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 6 NTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRS 65
N T D + +YG E R +RT G L+++ GL LL + IP
Sbjct: 208 NIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISED----GL--LLHDEDGIPI------ 255
Query: 66 NNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRI--- 122
+G++R N + ++ L+ +EHN V L + P +DDE L++ AR +
Sbjct: 256 --------SGDVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSA 306
Query: 123 IIAEIQHITYN-EFVPT-------------LLGKEVMNKFG 149
+IA+I I + E + T LLGK+ + FG
Sbjct: 307 VIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFG 347
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 43.9 bits (104), Expect = 1e-04
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 289 IQRGRDFGLPGYMEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVS 348
I + R++ + EFRKF GL FE+++ + +Y P +V+L+ G V+
Sbjct: 380 ILQAREWNVATLNEFRKFFGLKPYETFEDINSDPEVAEALE--LLYGHPDNVELYPGLVA 437
Query: 349 EK----PLPGSLAGPVFSCIIATQFSYA---RRGDRFWYELPNQPSSFTPAQLQ 395
E PGS P ++ I S A RGDRF+ + P L
Sbjct: 438 EDAKPPMPPGSGLCPGYT-ISRAILSDAVALVRGDRFY------TVDYNPNNLT 484
Score = 32.7 bits (75), Expect = 0.49
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 86 CVMHTLWAREHNRVAIELAKVN-----------------PHWDDETLFQEARRIIIAEIQ 128
C + ++ R HN V +LA++N DE LFQ AR I
Sbjct: 166 CALLVMFNRFHNYVVEQLAQINEGGRFTPPGDKLDSSAKEEKLDEDLFQTARLITCGLYI 225
Query: 129 HITYNEFVPTLLG 141
+I +++V +L
Sbjct: 226 NIVLHDYVRAILN 238
>gnl|CDD|198426 cd10028, UDG_F2_MUG, G:T/U mismatch specific DNA glcosylase (MUG).
G:T/U mismatch specific DNA glycosylases (MUG) are
classified as Family 2 of Uracil DNA glycosylase
enzymes. MUG catalyzes the removal of thymine or uracil
bases mispaired with guanine through the hydrolysis of
their N-glycosidic bond, generating abasic sites in DNA
to initiate the base excision repair pathway. G:U and
G:T mismatched base pairs arise in DNA either by
mis-incorporation during DNA replication or by
hydrolytic deamination of cytosine and 5-methyl
cytosine, respectively. MUGs are dsDNA specific base
excision repair enzymes. They explicitly recognize the
widowed guanine on the complementary strand rather than
the extrahelical scissile pyrimidine. This allows a
broader specificity so that some MUGs can excise uracil,
thymine or 3, N(4)-ethenocytosine from mismatches with
guanine. MUGs are found in Eubacteria and Eukarya, where
they appear to have complementary functions of Family 1
UDGs. MUG is an essential enzyme for maintaining the
integrity of genetic information.
Length = 162
Score = 31.3 bits (72), Expect = 0.57
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 366 ATQFSYARRGDRFW---YELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVD 414
A YA G+RFW +E + TP L A L T+LV
Sbjct: 24 AVGHHYAHPGNRFWKLLHE-----AGLTPRLLAPEEDAELLDYGIGLTNLVA 70
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 30.8 bits (71), Expect = 0.87
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 267 EVTNALFKKVGSHFGLDLVSFNIQRGRDFGL 297
EV N L K+ G LD +S +++G +GL
Sbjct: 2 EVRN-LSKRYGKKTALDDISLTVEKGEIYGL 31
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 28.8 bits (65), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 269 TNALFKKVGSHFGLDLVSFNIQRGRDFGLPG 299
+ K+ G LD +SF++++G FGL G
Sbjct: 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLG 33
>gnl|CDD|236696 PRK10458, PRK10458, DNA cytosine methylase; Provisional.
Length = 467
Score = 29.3 bits (66), Expect = 5.3
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 114 TLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGL---TLQKEGYW------DGYDDS 164
TLF + RII A+ I E V L + F + TL + GY +G DD
Sbjct: 206 TLFFDVARIIDAKRPAIFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDD- 264
Query: 165 VNPNIIDAFSAAAFRIGHTFLPTHIER 191
P IID G FLP H ER
Sbjct: 265 --PKIID---------GKHFLPQHRER 280
>gnl|CDD|234678 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 28.6 bits (65), Expect = 7.2
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 13/46 (28%)
Query: 119 ARRIIIAEIQHITYNEFVPTLLGKEVMN-KFGLTLQKEGYWDGYDD 163
AR I HITY L + ++ KFG LQ G+D
Sbjct: 224 ARMI-----GHITY-------LSDDELDEKFGRELQSGELPFGFDV 257
>gnl|CDD|233342 TIGR01285, nifN, nitrogenase molybdenum-iron cofactor biosynthesis
protein NifN. This protein forms a complex with NifE,
and appears as a NifEN in some species. NifEN is a
required for producing the molybdenum-iron cofactor of
molybdenum-requiring nitrogenases. NifN is closely
related to the nitrogenase molybdenum-iron protein beta
chain NifK. This model describes most examples of NifN
but excludes some cases, such as the putative NifN of
Chlorobium tepidum, for which a separate model may be
created [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 432
Score = 28.6 bits (64), Expect = 7.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 386 PSSFTPAQLQEIRKARLARVMCDNTDLVDTIQLWPIVLPD 425
S TP ++E+R +V+ L PI+LPD
Sbjct: 175 GSLLTPGDIEELR------------RMVEAFGLKPIILPD 202
>gnl|CDD|238646 cd01321, ADGF, Adenosine deaminase-related growth factors (ADGF), a
novel family of secreted growth-factors with sequence
similarty to adenosine deaminase.
Length = 345
Score = 28.4 bits (64), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 156 GYWDGYDDSVNPNIIDAFSAAAFRIGHTF-LPTH 188
G +G + N++DA RIGH F LP H
Sbjct: 202 GETNGDGTETDENLVDALLLNTKRIGHGFALPKH 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,772,062
Number of extensions: 2470506
Number of successful extensions: 1914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1854
Number of HSP's successfully gapped: 33
Length of query: 461
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 361
Effective length of database: 6,502,202
Effective search space: 2347294922
Effective search space used: 2347294922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)