RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8889
(461 letters)
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 362 bits (929), Expect = e-121
Identities = 152/453 (33%), Positives = 219/453 (48%), Gaps = 41/453 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRT--GHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
RN N LT +DA+ VYG +E AR+LR GLL +N FQ+ G L
Sbjct: 49 RNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDP 108
Query: 60 EGCTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEA 119
T + CF AG+ R +E L MHTL REHNR+A EL +NP WD E L+QEA
Sbjct: 109 CLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEA 168
Query: 120 RRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFR 179
R+I+ A +Q ITY +++P +LG M K+ + Y+DSV+P I + F AFR
Sbjct: 169 RKIVGAMVQIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF-TNAFR 221
Query: 180 IGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDL 239
GHT + + R ++ + R+ LS + + +
Sbjct: 222 YGHTLIQPFMFRLDNRYQPMEPNPRV----------------------PLSRVFFASWRV 259
Query: 240 YRPGLFDEYLMGLANQVSQA--MDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGL 297
G D L GL ++ + E+ LF++V GLDL + N+QR RD GL
Sbjct: 260 VLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVM-RIGLDLPALNMQRSRDHGL 318
Query: 298 PGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGSL 356
PGY +R+FCGLP +L + N + K Y P ++D+W GGVSE
Sbjct: 319 PGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGR 378
Query: 357 AGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTI 416
GP+ +CII TQF R GDRFW+E F+ Q Q + + L R++CDNT +
Sbjct: 379 VGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDNTGITTVS 435
Query: 417 QLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAE 449
+ I + + V C + +P+++ + W E
Sbjct: 436 K-NNIFMSNSYPRDFVNCST--LPALNLASWRE 465
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 356 bits (915), Expect = e-118
Identities = 142/453 (31%), Positives = 219/453 (48%), Gaps = 42/453 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRT--GHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
R N +T +DA+ VYG + S A LR GL+ +N ++GL L
Sbjct: 177 REQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSP 236
Query: 60 EGCTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEA 119
+ CF AG+ R +EQ++L HTL REHNR+A EL K+NPHW+ E L+QEA
Sbjct: 237 CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEA 296
Query: 120 RRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFR 179
R+I+ A IQ IT+ +++P +LG E+ + GY++SV+P I + F AFR
Sbjct: 297 RKILGAFIQIITFRDYLPIVLGSEMQKWI-------PPYQGYNNSVDPRISNVF-TFAFR 348
Query: 180 IGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDL 239
GH +P+ + R + ++ + L L + +
Sbjct: 349 FGHMEVPSTVSRLDENYQPWGPEAEL----------------------PLHTLFFNTWRI 386
Query: 240 YRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGL 297
+ G D + GL + S+ M D +T E+ N LF+ G DL + N+QR RD G+
Sbjct: 387 IKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGM 446
Query: 298 PGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGSL 356
PGY +R FCGL + L + N + K +Y P ++D+W GG +E +
Sbjct: 447 PGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGR 506
Query: 357 AGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTI 416
GP+ +C++ QF R GDRFW+E P FT Q ++K +R++CDNT + +
Sbjct: 507 VGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDNTH-ITKV 562
Query: 417 QLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAE 449
L ++ + V C + + +D S WA
Sbjct: 563 PLHAFQANNYP-HDFVDCST--VDKLDLSPWAS 592
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 340 bits (872), Expect = e-111
Identities = 81/448 (18%), Positives = 135/448 (30%), Gaps = 59/448 (13%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEG 61
L +D N +YG LR G L+ G + P D E
Sbjct: 187 PGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVI----GGEVYPPTVKDTQVEM 242
Query: 62 CTRSN-NTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEAR 120
+ L F G+ L + T+W REHNRV L + +P W DE LFQ +R
Sbjct: 243 IYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSR 302
Query: 121 RIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRI 180
I+I E I ++V L G KF L ++ A
Sbjct: 303 LILIGETIKIVIEDYVQHLSGYHFKLKFDPEL-------LFNQQFQYQNRIASEFNTLYH 355
Query: 181 GHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLY 240
H LP + + F + L
Sbjct: 356 WHPLLPDTFNIEDQEYSF-------------------------------KQFLYNNSILL 384
Query: 241 RPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGY 300
GL +++ Q++ + + +I + R+
Sbjct: 385 EHGL-TQFVESFTRQIAGRVAGGRNVP-----------IAVQAVAKASIDQSREMKYQSL 432
Query: 301 MEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPV 360
E+RK L +FEEL + ++Y+ ++L+ + EKP P ++ G
Sbjct: 433 NEYRKRFSLKPYTSFEEL--TGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGET 490
Query: 361 FSCIIATQFSYARRGDRFWYELPNQPSSFT-PAQLQEIRKARLARVMCDNTDLVDTIQLW 419
+ A G+ +PS+F + I A + ++C+N
Sbjct: 491 MVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSF- 549
Query: 420 PIVLPDHELNPRVPCRSGIIPSIDFSKW 447
+ P + + D +
Sbjct: 550 NVQDPQPTKTATINASASHSRLDDINPT 577
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 332 bits (853), Expect = e-109
Identities = 77/418 (18%), Positives = 127/418 (30%), Gaps = 58/418 (13%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDE- 60
L +D +YG LR G L+ + P + P
Sbjct: 187 PGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQML----NGEVYPPSVEEAPVLM 242
Query: 61 GCTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEAR 120
R Q G+ L + T+W REHNRV L +P W DE LFQ AR
Sbjct: 243 HYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTAR 302
Query: 121 RIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRI 180
I+I E I E+V L G + KF L G I F
Sbjct: 303 LILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF-----GAQFQYRNRIAMEF------- 350
Query: 181 GHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLY 240
H +P + + + L
Sbjct: 351 --------------------NQLYHWHPLMPDSFRVGPQDYS------YEQFLFNTSMLV 384
Query: 241 RPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGY 300
G+ + + + Q + + + + + + + I+ R L +
Sbjct: 385 DYGV-EALVDAFSRQPAGRIGG--GRNIDHHIL---------HVAVDVIKESRVLRLQPF 432
Query: 301 MEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPV 360
E+RK G+ +F+EL + +Y ++ + G + EK P S+ G
Sbjct: 433 NEYRKRFGMKPYTSFQEL--TGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGES 490
Query: 361 FSCIIATQFSYARRGDRFWYELPNQPSSFTP-AQLQEIRKARLARVMCDNTDLVDTIQ 417
+ A G+ + S+F ++ A L +++C NT +
Sbjct: 491 MIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVS 548
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 4e-07
Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 78/222 (35%)
Query: 97 NRVAIE--LAKVNPHWDDETLFQEARRIIIAEIQHITYNEFV----P-TLLGKEVMNKFG 149
+ ++ + K N H +++ I+ + V P +L G
Sbjct: 345 TQEQVQDYVNKTNSH------LPAGKQVEISLV--NGAKNLVVSGPPQSLYG------LN 390
Query: 150 LTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAFRIGHT- 208
LTL+K G D S P FS + + FLP +A+ F H+
Sbjct: 391 LTLRKAKAPSGLDQSRIP-----FSERKLKFSNRFLP------------VASPF---HSH 430
Query: 209 FLPTHIERWSKAHKFIAAKKLSDLIR-----RPYDLYRPGLFDEY----LMGLANQVSQA 259
L A I DL++ D+ P ++D + L L+ +S+
Sbjct: 431 LL-------VPASDLI----NKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSISER 478
Query: 260 MDDSITKEVTN--ALFKKVGSHFGLDLVSFNIQRGRDFGLPG 299
+ D I + + +H L DFG PG
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHI-L-----------DFG-PG 507
Score = 48.1 bits (114), Expect = 5e-06
Identities = 53/320 (16%), Positives = 94/320 (29%), Gaps = 87/320 (27%)
Query: 121 RIIIAEIQH--ITYNEFVPTLL---GKEVMNKFGLTLQK--EGYWDGYDDSVNPNIIDAF 173
R + + H + + VPT ++ +F L + EG+ + + ++ F
Sbjct: 7 RPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 174 SAAAFRIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTH-IERWSKAHKFIAA------ 226
+ + P+ + ++ + F + +L + I H A
Sbjct: 65 LG--Y-VSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDI------HALAAKLLQEND 113
Query: 227 ---KKLSDLIRRPYDLYRPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGS-HFGL 282
K +LI+ Y+ K+ +ALF+ VG + L
Sbjct: 114 TTLVKTKELIK------------NYI-----TARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 283 DLVSFNIQRGRDFGLPG------YM-EFRKFCGLPD--AHNFEELHGAMANY------TI 327
I FG G Y E R L +L A T
Sbjct: 157 ----VAI-----FG--GQGNTDDYFEELRD---LYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 328 GKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSC--IIATQFSYARRGDRFWYELPNQ 385
++T ++ W S P L SC I Q ++ Y + +
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH--------YVVTAK 254
Query: 386 PSSFTPAQLQEIRKARLARV 405
FTP +L+ K
Sbjct: 255 LLGFTPGELRSYLKGATGHS 274
Score = 40.4 bits (94), Expect = 0.001
Identities = 70/428 (16%), Positives = 110/428 (25%), Gaps = 175/428 (40%)
Query: 67 NTQLCFDAGEIR--------VNEQLVLCVMHTLWAREHNRVAIELAKVNPH------W-- 110
NT F+ E+R + L+ TL E R ++ KV W
Sbjct: 165 NTDDYFE--ELRDLYQTYHVLVGDLIKFSAETLS--ELIRTTLDAEKVFTQGLNILEWLE 220
Query: 111 ------DDE------------TLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTL 152
D + + Q A ++ A++ T E L G T
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG--------ATG 272
Query: 153 QKEGYWDGYDDSVNPNIIDAFSAAAFRIGHTFLPTHIERW----SKAHKFIAAAFRIG-- 206
+G ++ +A A + W K I F IG
Sbjct: 273 HSQG------------LV---TAVAIAETDS--------WESFFVSVRKAITVLFFIGVR 309
Query: 207 ------HTFLPTHIERWSKAHKF-IAAKKLSDLIRRPYDLYRPGLFDEYLMGLANQ-VSQ 258
+T LP I S + + + LS I +L + + D + N +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLS--IS---NLTQEQVQD--YVNKTNSHLPA 362
Query: 259 AMDDSITKEVTNALFKKVGSHF---G--LDLVSFNIQ-------RGRD-----FG---LP 298
I+ + N + G L N+ G D F L
Sbjct: 363 GKQVEIS--LVNG-----AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 299 GYMEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDV---DLWSGGVSEKPLPGS 355
F LP A F H S + D+ DL VS
Sbjct: 416 FSNRF-----LPVASPF---H-----------SHLLVPASDLINKDLVKNNVSFN--AKD 454
Query: 356 LAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRK---ARLARVMCDNTDL 412
+ PV+ +F + L+ + R+ +
Sbjct: 455 IQIPVY-------------------------DTFDGSDLRVLSGSISERIVDCII--RLP 487
Query: 413 VDTIQLWP 420
V W
Sbjct: 488 VK----WE 491
Score = 34.6 bits (79), Expect = 0.087
Identities = 39/301 (12%), Positives = 79/301 (26%), Gaps = 120/301 (39%)
Query: 200 AAAFR--------IGHTFL-PTHIERWSKAHKFIAAKKLSD----LIRRPYDLY------ 240
A + R + H L PT F A +L + ++ P + +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTAS--------FFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 241 --RPGLFDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLP 298
L ++L +++ V + +V N F + L
Sbjct: 55 TTPAELVGKFLGYVSSLVEPS-KVGQFDQVLNLCLT----EFE-----------NCY-LE 97
Query: 299 GYMEFRKFCGLPDAHNFEELHGAMANY------TIGKYSSI----YTGPGDVDLWSGGVS 348
G ++H A T+ K + T + ++
Sbjct: 98 G----------------NDIHALAAKLLQENDTTLVKTKELIKNYIT--------ARIMA 133
Query: 349 EKPLPGSLAGPVFSCI------IATQFSYARRG-----DRFWYELPNQPSSFTPAQLQEI 397
++P +F + + F G D ++ EL L +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIF-----GGQGNTDDYFEEL---------RDLYQT 179
Query: 398 RKARLARVMCDNTDLVDTI--QLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAEFPQGGP 455
+ DL+ L ++ + G+ + +W E P P
Sbjct: 180 YHVLVG-------DLIKFSAETLSELIRTTLDAEKVFT--QGL----NILEWLENPSNTP 226
Query: 456 N 456
+
Sbjct: 227 D 227
Score = 32.7 bits (74), Expect = 0.34
Identities = 29/146 (19%), Positives = 42/146 (28%), Gaps = 60/146 (41%)
Query: 10 GVIDANTVYGVKESFARSLRTGH--GGLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRSNN 67
G+I A+ FA GH G EY
Sbjct: 1751 GLIPADAT------FA-----GHSLG----------EY---------------------- 1767
Query: 68 TQLCFDAGEIRVNEQLVLCV------MHTLWAR-EHNRVAIELAKVNPHWDDETLFQEAR 120
L A + + E LV V M R E R + +NP + QEA
Sbjct: 1768 AALASLADVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 121 RIIIAEIQHITYNEFVPTLLGKEVMN 146
+ ++ + T V E++N
Sbjct: 1827 QYVVERVGKRT-GWLV------EIVN 1845
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 44/332 (13%), Positives = 93/332 (28%), Gaps = 88/332 (26%)
Query: 117 QEARRIII--AEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFS 174
Q+ + I+ EI HI + + F L K ++ F
Sbjct: 39 QDMPKSILSKEEIDHI-IMS--KDAV-SGTLRLFWTLLSK-----------QEEMVQKFV 83
Query: 175 AAAFRIGHTFLPTHIERWSKA-----HKFIAA---AFRIGHTFLPTHIERWSKAHKFIAA 226
RI + FL + I+ + +I + F ++ R K
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-- 141
Query: 227 KKLSDLIRRPY-DLYRPGLFDEYLMG------LANQVSQAMDDSITKEVTNALF-KKVGS 278
+ L +L + G + +A V + ++ +F + +
Sbjct: 142 QALLELRPAKNVLID--G------VLGSGKTWVALDVCL--SYKVQCKMDFKIFWLNLKN 191
Query: 279 HFGLDLVSFNIQRGRDFGLPGYMEFRK-FCGLPDA-----HNFEELHGAMANYTIGK-YS 331
+ V +Q+ L + + D + + K Y
Sbjct: 192 CNSPETVLEMLQK-----L--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 332 SIYTGPGDV--DLWSGGVSEKPLPGSLAGPVF--SC--IIATQFS----YARRGDRFWYE 381
+ V ++ + F SC ++ T+F +
Sbjct: 245 NCL----LVLLNVQNAKAWN----------AFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 382 LPNQPSSFTPAQLQEIRKARLARVM-CDNTDL 412
L + + TP +++ + L + + C DL
Sbjct: 291 LDHHSMTLTPDEVKSL----LLKYLDCRPQDL 318
Score = 36.4 bits (83), Expect = 0.024
Identities = 77/520 (14%), Positives = 144/520 (27%), Gaps = 183/520 (35%)
Query: 15 NTVYGVKESFAR----------SLRTGHGGLLRMNPHFQEYGLKDLLPY------KTDIP 58
+ +Y + FA+ LR LL + P K++L KT +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPA------KNVLIDGVLGSGKTWVA 167
Query: 59 DEGCTRSNNTQLCFDAGEI------RVNE-QLVLCVMHTLWAR-EHNRVAIELAKVNPHW 110
+ C S Q D +I N + VL ++ L + + N + N
Sbjct: 168 LDVC-LSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 111 DDETLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNII 170
++ E RR++ ++ + LL V+ + N
Sbjct: 226 RIHSIQAELRRLLKSK-------PYENCLL---VL----------------LNVQNAKAW 259
Query: 171 DAF-------------SAAAFRIGHTFLPTHIERWSK------AHKFIAAAFRIGHTFLP 211
+AF F T ++ S + LP
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 212 THIERWS-KAHKFIAAKKLSDLIRRPYDLYRPGLFDEYLMGLANQVSQAMDDSITKEVTN 270
+ + + IA + D + +D + ++++ ++ S+ +
Sbjct: 320 REVLTTNPRRLSIIAES-IRDGLAT---------WDNWKHVNCDKLTTIIESSL-NVLEP 368
Query: 271 ALFKKVGSHFGLDLVSF----NI------------------------------QRGRD-- 294
A ++K F L F +I ++
Sbjct: 369 AEYRK---MF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 295 -FGLPG-YMEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPL 352
+P Y+E + N LH ++ ++ Y P D +
Sbjct: 425 TISIPSIYLELKV-----KLENEYALHRSIVDH--------YNIPKTFDSD------DLI 465
Query: 353 PGSLAGPVFSCIIATQFSYARRGDRF-----------WYE--------LPNQPSSFTPAQ 393
P L +S I +R + E N S
Sbjct: 466 PPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523
Query: 394 LQEIRKARLARVMCDNTD----LVDTIQLWPIVLPDHELN 429
LQ+++ + +CDN LV+ I + LP E N
Sbjct: 524 LQQLKFYK--PYICDNDPKYERLVNAILDF---LPKIEEN 558
Score = 28.7 bits (63), Expect = 5.0
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 47 LKDLLPYKTDIPDEGCTRSNNTQLCFDAGE--IRVNEQLVLCVMHTLWAREHNRVAIELA 104
L+ L YK I D +L + ++ E L+ ++ + + +A
Sbjct: 524 LQQLKFYKPYICDN---DPKYERLVNAILDFLPKIEENLICS--------KYTDL-LRIA 571
Query: 105 KVNPHWDDETLFQEARRII 123
+ E +F+EA + +
Sbjct: 572 LMAED---EAIFEEAHKQV 587
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A
{Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A*
1mwj_A
Length = 168
Score = 33.4 bits (76), Expect = 0.079
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 366 ATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTIQLWPIVLPD 425
T F +A +RFW + + FT QL+ L C T LVD + +
Sbjct: 25 GTGFPFAHPANRFWKVIYQ--AGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSK 82
Query: 426 HELNPRVP 433
EL+
Sbjct: 83 QELHAGGR 90
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA
repair enzymes, uracil-DNA glycosylase, MUG, hydrolase;
1.7A {Deinococcus radiodurans} PDB: 2c2p_A
Length = 199
Score = 32.7 bits (74), Expect = 0.14
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 366 ATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVD 414
+ YA ++FW L TP QL A L + TD+
Sbjct: 41 RARAYYANPENKFWRTL--HAVGLTPRQLVPQEYATLPQYGLGLTDVAK 87
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 30.2 bits (68), Expect = 1.9
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 106 VNPHWDDETLFQEARRIIIAEI--------QHI-TYNEFVPTLLGKEVMNKFG-LTLQKE 155
+ +ETL QE +I+ Q + +++EFV + +E+++ LTL +
Sbjct: 3 YEDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTM-QEIVDDDSTLTLDQY 61
Query: 156 GYWDGYDDSVNPNI 169
G V
Sbjct: 62 AQHTGAQGDVTRRY 75
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural
protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6
PDB: 1m3d_A 1t61_A 1li1_A
Length = 229
Score = 29.2 bits (65), Expect = 2.7
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 330 YSSIYT-GPGDVDLWSGGVSEKPLPGSLAGPVFSCIIATQFSYARRGDR-FWYELPNQ-P 386
YS +Y G G + L P C I ++A R D +W P P
Sbjct: 31 YSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMP 90
Query: 387 SSFTPAQLQEIRK 399
S P + IR
Sbjct: 91 MSMAPITGENIRP 103
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 28.5 bits (64), Expect = 5.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 294 DFGLPGYME----FRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGV 347
DFG Y+E F FCG + E L G Y GP ++++WS GV
Sbjct: 173 DFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNP-----------YRGP-ELEMWSLGV 218
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 28.7 bits (63), Expect = 5.8
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 15/127 (11%)
Query: 168 NIIDAFSAAAFRIGHTFLP-------THIERWSKAHKFIAAAF-RIGHTFLPTHIERWSK 219
+I+ A +GH F+ + + + I+AA G + R +
Sbjct: 692 SILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMR 751
Query: 220 AHKFIAAKKLSDLIRRPYDL------YRPGLFDEYLMGLANQVSQAMDDSITKEVTNALF 273
K K +S + R D + P L D L+ V A + + +
Sbjct: 752 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVL-STMAIIV 810
Query: 274 KKVGSHF 280
K+G H
Sbjct: 811 NKLGGHI 817
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 27.9 bits (63), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 267 EVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPG 299
V + L K++G L +SF I+ G FGL G
Sbjct: 17 VVKD-LRKRIGKKEILKGISFEIEEGEIFGLIG 48
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein;
2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Length = 149
Score = 27.1 bits (60), Expect = 7.3
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 402 LARVMCDNTDLVDTIQLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAEFPQGGPNFFNK 460
R+ +N D I L PI + R I+ + + +W F+
Sbjct: 86 HFRLFDENNDAAILILLEPI--EKKAIPQRFXKLRKIMNTKTYLEWPMDEAQREGFWVN 142
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 9.2
Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 28/84 (33%)
Query: 311 DAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGP---VFSCIIAT 367
A F+ HG I+ P + + +L P F ++A
Sbjct: 941 TAEQFKHQHGDKV--------DIFEIPETGEYSVKLLKGA----TLYIPKALRFDRLVAG 988
Query: 368 QFS-------------YARRGDRF 378
Q + D
Sbjct: 989 QIPTGWNAKTYGISDDIISQVDPI 1012
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 27.6 bits (62), Expect = 9.2
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 294 DFGL-----PGYMEFRKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGV 347
DFG+ G P F MA ++ + I++G +D+W+ GV
Sbjct: 180 DFGVSNEFKGSDALLSNTVGTP---AF------MAPESLSETRKIFSGKA-LDVWAMGV 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,619,881
Number of extensions: 480799
Number of successful extensions: 977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 30
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)