RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8889
(461 letters)
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 383 bits (985), Expect = e-129
Identities = 154/454 (33%), Positives = 223/454 (49%), Gaps = 43/454 (9%)
Query: 2 RNPFNTLTGVIDANTVYGVKESFARSLRT--GHGGLLRMNPHFQEYGLKDLLPYKTDIPD 59
RN N LT +DA+ VYG +E AR+LR GLL +N FQ+ G + LLP+ D
Sbjct: 153 RNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNG-RALLPFDNLHDD 211
Query: 60 E-GCTRSNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQE 118
T + CF AG+ R +E L MHTL REHNR+A EL +NP WD E L+QE
Sbjct: 212 PCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQE 271
Query: 119 ARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAF 178
AR+I+ A +Q ITY +++P +LG M K+ + Y+DSV+P I + F AF
Sbjct: 272 ARKIVGAMVQIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF-TNAF 324
Query: 179 RIGHTFLPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYD 238
R GHT + + R ++ + R+ LS + +
Sbjct: 325 RYGHTLIQPFMFRLDNRYQPMEPNPRVP----------------------LSRVFFASWR 362
Query: 239 LYRPGLFDEYLMGLANQVSQAM--DDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFG 296
+ G D L GL ++ + E+ LF++V GLDL + N+QR RD G
Sbjct: 363 VVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVM-RIGLDLPALNMQRSRDHG 421
Query: 297 LPGYMEFRKFCGLPDAHNFEELHGAMANYTIG-KYSSIYTGPGDVDLWSGGVSEKPLPGS 355
LPGY +R+FCGLP +L + N + K Y P ++D+W GGVSE
Sbjct: 422 LPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKG 481
Query: 356 LAGPVFSCIIATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDT 415
GP+ +CII TQF R GDRFW+E F+ Q Q + + L R++CDNT +
Sbjct: 482 RVGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDNTGITTV 538
Query: 416 IQLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAE 449
+ + + V C + +P+++ + W E
Sbjct: 539 SKNNIFMSNSYP-RDFVNCST--LPALNLASWRE 569
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 333 bits (855), Expect = e-110
Identities = 79/417 (18%), Positives = 129/417 (30%), Gaps = 60/417 (14%)
Query: 6 NTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDE-GCTR 64
L +D N +YG LR G L+ G + P D E
Sbjct: 150 RGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVI----GGEVYPPTVKDTQVEMIYPP 205
Query: 65 SNNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIII 124
L F G+ L + T+W REH RV L + +P W DE LFQ ++ I+I
Sbjct: 206 HIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILI 265
Query: 125 AEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIGHTF 184
E I ++V L G KF L ++ A H
Sbjct: 266 GETIKIVIEDYVQHLSGYHFKLKFDPEL-------LFNQQFQYQNRIASEFNTLYHWHPL 318
Query: 185 LPTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYRPGL 244
LP + + F + L GL
Sbjct: 319 LPDTFNIEDQEYSF-------------------------------KQFLYNNSILLEHGL 347
Query: 245 FDEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGL-DLVSFNIQRGRDFGLPGYMEF 303
+S T+++ + + + +I + R+ E+
Sbjct: 348 -------------TQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEY 394
Query: 304 RKFCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSC 363
RK L +FEEL G + ++Y+ ++L+ + EKP P ++ G
Sbjct: 395 RKRFSLKPYTSFEELTGE--KEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVE 452
Query: 364 IIATQFSYARRGDRFWYELPNQPSSFT-PAQLQEIRKARLARVMCDNTDLVDTIQLW 419
+ A G+ +PS+F + I A + ++C+N
Sbjct: 453 LGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFN 509
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 321 bits (825), Expect = e-106
Identities = 81/421 (19%), Positives = 126/421 (29%), Gaps = 59/421 (14%)
Query: 6 NTLTGVIDANTVYGVKESFARSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRS 65
L +D +YG LR G L+ G + R
Sbjct: 149 KALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLN---GEVYPPSVEEAPVLMHYPRG 205
Query: 66 NNTQLCFDAGEIRVNEQLVLCVMHTLWAREHNRVAIELAKVNPHWDDETLFQEARRIIIA 125
Q G+ L + T+W REHNRV L +P W DE LFQ AR I+I
Sbjct: 206 IPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 265
Query: 126 EIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIGHTFL 185
E I E+V L G + KF L G I F
Sbjct: 266 ETIKIVIEEYVQQLSGYFLQLKFDPELLF-----GAQFQYRNRIAMEF------------ 308
Query: 186 PTHIERWSKAHKFIAAAFRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYRPGLF 245
H +P + + + L G
Sbjct: 309 ---------------NQLYHWHPLMPDSFRVGPQDYS------YEQFLFNTSMLVDYG-V 346
Query: 246 DEYLMGLANQVSQAMDDSITKEVTNALFKKVGSHFGLDLVSFNIQRGRDFGLPGYMEFRK 305
+ + + Q + + H L + I+ R L + E+RK
Sbjct: 347 EALVDAFSRQPAGRIGGGRNI-----------DHHILHVAVDVIKESRVLRLQPFNEYRK 395
Query: 306 FCGLPDAHNFEELHGAMANYTIGKYSSIYTGPGDVDLWSGGVSEKPLPGSLAGPVFSCII 365
G+ +F+EL G + +Y ++ + G + EK P S+ G +
Sbjct: 396 RFGMKPYTSFQELTGE--KEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMG 453
Query: 366 ATQFSYARRGDRFWYELPNQPSSF-TPAQLQEIRKARLARVMCDNTDLVDTIQLWPIVLP 424
A G+ + S+F ++ A L +++C NT + +P
Sbjct: 454 APFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVSFH---VP 510
Query: 425 D 425
D
Sbjct: 511 D 511
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.0 bits (59), Expect = 3.0
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Query: 365 IATQFSYARRGDRFWYELPNQPSSFTPAQLQEIRKARLARVMCDNTDLVDTIQLWPIVLP 424
I + + ++ + E+ + R+ +N D I L PI
Sbjct: 50 IIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFS-HFRLFDENNDAAILILLEPI--E 106
Query: 425 DHELNPRVPCRSGIIPSIDFSKWAEFPQGGPNFFNK 460
+ R I+ + + +W F+
Sbjct: 107 KKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVN 142
>d1n8yc2 c.10.2.5 (C:323-488) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 166
Score = 26.8 bits (59), Expect = 3.5
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 26 RSLRTGHGGLLRMNPHFQEYGLKDLLPYKTDIPDEGCTRSNNTQLCF 72
R L G L GL+ L ++ N LCF
Sbjct: 91 RILHDGAYSLTLQGLGIHSLGLRSL----RELGSGLALIHRNAHLCF 133
>d3b2ua1 c.10.2.5 (A:312-480) EGF receptor extracellular domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 26.9 bits (59), Expect = 4.4
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 12/58 (20%)
Query: 23 SFARSLRTGHGGLL--------RMNPHFQEYGLKDLLPYKTDIPDEGCTRSNNTQLCF 72
+L G ++ + GL+ L +I D S N LC+
Sbjct: 83 HAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSL----KEISDGDVIISGNKNLCY 136
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 150
Score = 26.2 bits (57), Expect = 5.6
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 171 DAFSAAAFRIG--HTFLPTHIERWSKAHKFIAAAFR--IGHTFLPTHIERWSKAHKFIAA 226
++ A I H L E++ + + AA + +G+ I W++A+ +A
Sbjct: 72 NSLMAVLKNIANKHASLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLAD 131
Query: 227 KKLSDLIRRPYDLYR 241
L+ +LY
Sbjct: 132 V----LMGMESELYE 142
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 26.2 bits (57), Expect = 5.9
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 3/90 (3%)
Query: 65 SNNTQLCFDAGEIRVNEQLVLCVMHTL-WAREHNRVAIELAKVNPHWDDETLFQEARRII 123
+ L +A + + + V+ + + V P +
Sbjct: 29 GSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTC 88
Query: 124 IAEIQH--ITYNEFVPTLLGKEVMNKFGLT 151
+ H + F + EV FG T
Sbjct: 89 WGKYAHQSFGIDRFGASGKAPEVFKFFGFT 118
>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 26.4 bits (57), Expect = 6.1
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 10/132 (7%)
Query: 113 ETLFQEARRIIIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVN------ 166
+ +++ + A +I+ V L ++ + + +
Sbjct: 33 DIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCL 92
Query: 167 --PNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAFR--IGHTFLPTHIERWSKAHK 222
P I + + + + F+ H I++ ++ K
Sbjct: 93 SFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDK 152
Query: 223 FIAAKKLSDLIR 234
KL++LIR
Sbjct: 153 KKVRPKLNELIR 164
>d1igra1 c.10.2.5 (A:1-149) Type 1 insulin-like growth factor
receptor extracellular domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 26.0 bits (57), Expect = 6.4
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 39 NPHFQEYGLKDLLPYKTDIPDEGCTRSNNTQLCF 72
+ ++ GL +L +I N LC+
Sbjct: 92 MTNLKDIGLYNL----RNITRGAIRIEKNADLCY 121
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
Length = 257
Score = 26.1 bits (57), Expect = 8.8
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 203 FRIGHTFLPTHIERWSKAHKFIAAKKLSDLIRRPYDLYRPGLF-----DEYLMGLANQVS 257
FR H + ++ + K L++ + + P + + +
Sbjct: 173 FRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAAN 232
Query: 258 QAMDDSITKEVTNALFKKVGSHFG 281
+ +KV S G
Sbjct: 233 PYYLKV--PGIVAEYMQKVASLTG 254
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 25.8 bits (56), Expect = 8.8
Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 402 LARVMCDNTDLVDTIQLWPIVLPDHELNPRVPCRSGIIPSIDFSKWAEFPQGGPNFFNK 460
+ + ++ + I L PI P + + ++ + +W + F+
Sbjct: 91 HHNLFHEGSNSLILILLEPI--PQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWAN 147
>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
stercoraria [TaxId: 61]}
Length = 144
Score = 25.7 bits (56), Expect = 9.0
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 102 ELAKVNPHWDDETLFQEARRI--IIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWD 159
E+ + E+L Q ++A Q+I + + K + + Y
Sbjct: 37 EVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLPAILPAVKKIAVKHCQAGVAAAHYP- 95
Query: 160 GYDDSVNPNIIDAFSAAAFRIGHTFLPTHIERWSKAHKFIAAAF 203
V ++ A +G ++ W KA+ IA F
Sbjct: 96 ----IVGQELLGAIKEV---LGDAATDDILDAWGKAYGVIADVF 132
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera
dibranchiata) [TaxId: 6350]}
Length = 147
Score = 25.5 bits (55), Expect = 9.6
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 123 IIAEIQHITYNEFVPTLLGKEVMNKFGLTLQKEGYWDGYDDSVNPNIIDAFSAAAFRIGH 182
++ + +G ++ E + + +++ A IG
Sbjct: 69 AVSHLGDEGKMVAEMKAVGVRHKGYGNKHIKAEYFEP-----LGASLLSAMEHR---IGG 120
Query: 183 TFLPTHIERWSKAHKFIAAAFRIG 206
+ W+ A+ I+ A G
Sbjct: 121 KMNAAAKDAWAAAYGDISGALISG 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,874,413
Number of extensions: 92134
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 17
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)