BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy889
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
 pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
          Length = 239

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 85  SAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYR 144
           S++    G+ N+       RF +  AE LP   DS+   T  +   + + + KA+ E  R
Sbjct: 60  SSFAQEKGVENV-------RFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVAR 112

Query: 145 VLKPGGRFLCLE 156
           VLK  GRFL ++
Sbjct: 113 VLKQDGRFLLVD 124


>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
 pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
          Length = 276

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 92  GIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151
           GI+N+       +FL+AN   LP E  S+    + F + ++   ++AL    +VLKPGG 
Sbjct: 85  GIKNV-------KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGT 137

Query: 152 FLCLEFSH 159
              +E  H
Sbjct: 138 ITVIEGDH 145



 Score = 26.9 bits (58), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 67  LRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRL----RFLEANAEELPIESDSYSA 122
           ++FL+AN   LP E  S+    + F + ++  P   L    + L+       IE D  S 
Sbjct: 89  VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSC 148

Query: 123 Y 123
           Y
Sbjct: 149 Y 149


>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
           Possible Histamine N-Methyltransferase (Tm1293) From
           Thermotoga Maritima At 2.20 A Resolution
 pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
           Possible Histamine N-Methyltransferase (Tm1293) From
           Thermotoga Maritima At 2.20 A Resolution
          Length = 219

 Score = 34.3 bits (77), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 94  RNIDIPNPRLRF-LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 150
           R  +I   R  F L+  AE LP++ +S+        I  V   ++AL EAYR+LK GG
Sbjct: 76  RXAEIARKRGVFVLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG 133


>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
          Length = 260

 Score = 33.5 bits (75), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158
           + ++ +++ +AE+ P   + +   T      +       +SEAYRVLK GG+ L ++ S
Sbjct: 84  HQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142


>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With L-malate Ion
 pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With L-malate Ion
 pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Glu: An
           External Aldimine Mimic
 pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Glu: An
           External Aldimine Mimic
 pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Dap: An
           External Aldimine Mimic
 pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Dap: An
           External Aldimine Mimic
 pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana (No Plp)
 pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana (No Plp)
          Length = 432

 Score = 33.1 bits (74), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 156
           NPR  F    AEE+ +E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 157 FSHVNN 162
           F+  +N
Sbjct: 308 FNGASN 313


>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-Glu: External Aldimine Form
 pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-Glu: External Aldimine Form
          Length = 432

 Score = 33.1 bits (74), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 156
           NPR  F    AEE+ +E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSQYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 157 FSHVNN 162
           F+  +N
Sbjct: 308 FNGASN 313


>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
 pdb|3BUS|B Chain B, Crystal Structure Of Rebm
          Length = 273

 Score = 33.1 bits (74), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
           R+ F  A+A +LP E  S+ A      + +     +AL E  RVL+PGG     +F
Sbjct: 112 RVTFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADF 167


>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With Ll-Dap: External Aldimine Form
 pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With Ll-Dap: External Aldimine Form
 pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-glu: External Aldimine Form
 pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-glu: External Aldimine Form
 pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana
 pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana
          Length = 432

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 156
           NPR  F    AEE+ +E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 157 FSHVNN 162
           F+  +N
Sbjct: 308 FNGASN 313


>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
          Length = 215

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 93  IRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
           +R +D P+     +        + +     +T++     V  +D+ LSE  RVL PGGRF
Sbjct: 98  VRKLDFPSASFDVVLEKGTLDALLAGERDPWTVS--SEGVHTVDQVLSEVSRVLVPGGRF 155

Query: 153 LCL 155
           + +
Sbjct: 156 ISM 158


>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8 Complexed With
           S-adenosylmethionine
 pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8 Complexed With
           S-adenosylmethionine
 pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8
 pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8
          Length = 263

 Score = 32.3 bits (72), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
           +++ ++A+A  +P+  +S     +      V    K L+EA RVLKPGG  L
Sbjct: 87  KVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138


>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana
 pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana
          Length = 432

 Score = 32.0 bits (71), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 156
           NPR  F    AEE+  E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAXETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 157 FSHVNN 162
           F+  +N
Sbjct: 308 FNGASN 313


>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
 pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
          Length = 260

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 12/61 (19%)

Query: 92  GIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPG 149
           G++N+         +EA AE+LP  S ++ A  +A G  +  V   DKA SE  RVL P 
Sbjct: 96  GVKNV---------VEAKAEDLPFPSGAFEA-VLALGDVLSYVENKDKAFSEIRRVLVPD 145

Query: 150 G 150
           G
Sbjct: 146 G 146


>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
 pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
          Length = 211

 Score = 31.2 bits (69), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
           P   ++ A  E LP   +S+    +   +  V  +++ L EA RVL+PGG  + 
Sbjct: 77  PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVV 130


>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
           S-Adenosyl-L-Methionine-Dependent Methyltransferase
           (Mmp1179) From Methanococcus Maripaludis At 1.15 A
           Resolution
          Length = 219

 Score = 30.4 bits (67), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 72  ANAEELPIESDSYSAYTIAFGIRNIDIPN--PRLRFLEANAEELPIESDSYSAYTIAFG- 128
           A   +  I +  +S +     ++NI   N   R++ ++ +   +PIE D+Y+   ++ G 
Sbjct: 62  AKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNIPIE-DNYADLIVSRGS 120

Query: 129 IRNVTRIDKALSEAYRVLKPGGR 151
           +     +  A  E YR+LK GG+
Sbjct: 121 VFFWEDVATAFREIYRILKSGGK 143


>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
           Methyltransferase (Np_349143.1) From Clostridium
           Acetobutylicum At 2.00 A Resolution
 pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
           Methyltransferase (Np_349143.1) From Clostridium
           Acetobutylicum At 2.00 A Resolution
          Length = 209

 Score = 29.6 bits (65), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 100 NPRLRFLEANAEELPIESDSYS---AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
           N +L   + +  +LP + +S S   +Y   F  R    + +A+ E  RVLKPGG   C+ 
Sbjct: 70  NFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRK-NDVKEAIDEIKRVLKPGG-LACIN 127

Query: 157 F 157
           F
Sbjct: 128 F 128


>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
           Nucleomethylin
 pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
           Nucleomethylin
          Length = 215

 Score = 29.6 bits (65), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 81  SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 140
            D   A +I   +   D+ +   R    +  ++P+E +S         +   T I   L 
Sbjct: 77  GDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLE 135

Query: 141 EAYRVLKPGGRFLCLEFS 158
           EA RVLKPGG     E S
Sbjct: 136 EANRVLKPGGLLKVAEVS 153


>pdb|3D2U|A Chain A, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
 pdb|3D2U|E Chain E, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
          Length = 281

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 6   YLVFPGDIAFRFLNYVDKLPPNTLSEHCAP 35
           Y  FPG+I   F++Y DK+P ++    C P
Sbjct: 212 YGFFPGEIQITFIHYGDKVPEDS-EPQCNP 240


>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
          Length = 450

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 139 LSEAYRVLKPGGRFL---CLEFSHVNNSMLQW 167
           L  A R++KPGGR L   C  F   N   ++W
Sbjct: 372 LESAARLVKPGGRLLYTTCSIFKEENEKNIRW 403


>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
           Dehydratase- Shikimate Dehydrogenase In Complex With
           Tartrate And Shikimate
          Length = 523

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 106 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 142
           ++ N EE PI  D+   Y + F      RI + L EA
Sbjct: 436 MQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA 472


>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
           Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
 pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
           Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
          Length = 523

 Score = 26.2 bits (56), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 106 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 142
           ++ N EE PI  D+   Y + F      RI + L EA
Sbjct: 436 MQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA 472


>pdb|3GU3|A Chain A, Crystal Structure Of The Methyltransferase Bc_2162 In
           Complex With S- Adenosyl-L-Homocysteine From Bacillus
           Cereus, Northeast Structural Genomics Consortium Target
           Bcr20
 pdb|3GU3|B Chain B, Crystal Structure Of The Methyltransferase Bc_2162 In
           Complex With S- Adenosyl-L-Homocysteine From Bacillus
           Cereus, Northeast Structural Genomics Consortium Target
           Bcr20
          Length = 284

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 104 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
            FLE +A E+ + +D Y        + + T  +  L +    +K GG+ +C E   ++N
Sbjct: 75  EFLEGDATEIEL-NDKYDIAICHAFLLHXTTPETXLQKXIHSVKKGGKIICFEPHWISN 132


>pdb|2GH1|A Chain A, Crystal Structure Of The Putative Sam-Dependent
           Methyltransferase Bc2162 From Bacillus Cereus, Northeast
           Structural Genomics Target Bcr20.
 pdb|2GH1|B Chain B, Crystal Structure Of The Putative Sam-Dependent
           Methyltransferase Bc2162 From Bacillus Cereus, Northeast
           Structural Genomics Target Bcr20
          Length = 301

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 104 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
            FLE +A E+ + +D Y        + + T  +  L +    +K GG+ +C E   ++N
Sbjct: 92  EFLEGDATEIEL-NDKYDIAICHAFLLHXTTPETXLQKXIHSVKKGGKIICFEPHWISN 149


>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
           Mycobacterium Abscessus
          Length = 415

 Score = 26.2 bits (56), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 77  LPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI 115
           +P E DS  A   A G+ N+ +P+P L    +N+E  P+
Sbjct: 56  VPPELDSLKAKARAAGLWNLFLPDPELGGGLSNSEYAPL 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,858,174
Number of Sequences: 62578
Number of extensions: 188771
Number of successful extensions: 503
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 33
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)