BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy889
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VYF8|COQ5_DROME 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Drosophila melanogaster GN=coq5 PE=1 SV=1
Length = 301
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 90/157 (57%), Gaps = 37/157 (23%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI FR+L Y++ P + HVTV+DIN+ ML+VGE+RA+
Sbjct: 112 GDITFRYLRYLNNQPN---PQQRPSHVTVSDINQHMLNVGEERAK--------------- 153
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
L + +D S T+A+ A+AE+LP S++AYTIAFGIR
Sbjct: 154 -----RLGLTTDQLSNCTVAWQC--------------ADAEKLPFPDASFTAYTIAFGIR 194
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
N T +DK LSEAYRVL+PGGRF+CLEFSH+ N +QW
Sbjct: 195 NCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNETMQW 231
>sp|Q5ZLL5|COQ5_CHICK 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Gallus gallus GN=COQ5 PE=2 SV=1
Length = 311
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 83/179 (46%), Gaps = 64/179 (35%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPH------------------------VTVADINRAM 46
GDIAFRFLNYV + L + H V V DIN+ M
Sbjct: 101 GDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQEEKSNPLGDSQVVVCDINKEM 160
Query: 47 LDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFL 106
L G+Q+A+ L YS L ++
Sbjct: 161 LKAGKQKAQHL-------------------------GYS---------------EGLSWV 180
Query: 107 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NAEEL + D + YTIAFGIRNVTRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 181 LGNAEELHFDDDKFDVYTIAFGIRNVTRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 239
>sp|A1UUE1|UBIE_BARBK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
GN=ubiE PE=3 SV=1
Length = 260
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 81/155 (52%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR LN K H TV DIN +ML+VG++RA+
Sbjct: 84 GDIAFRILNASRK----------KAHATVLDINHSMLNVGKKRAQ--------------- 118
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ P + F+EANAE+LP S+ AYTIAFGIR
Sbjct: 119 -------------------------INGLAPFIDFVEANAEQLPFSDQSFDAYTIAFGIR 153
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV IDKALSEA+RVLKPGGRFLCLEFS+V +L
Sbjct: 154 NVPHIDKALSEAFRVLKPGGRFLCLEFSNVEMPLL 188
>sp|Q0P5A2|COQ5_BOVIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Bos taurus GN=COQ5 PE=2 SV=1
Length = 330
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 85/178 (47%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYVD-----------KLPPNTLSEHCA------------PHVTVADINRAML 47
GDIAFRFLNYV + N E A HV V DIN+ ML
Sbjct: 118 GDIAFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIARKYQNEEDSLGGSHVMVCDINKEML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
+G+Q+AR + Y A L ++
Sbjct: 178 KIGKQKAR-------------------------AQGYKA---------------GLAWIL 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + + + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN +L
Sbjct: 198 GDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLL 255
>sp|Q8FUZ3|UBIE_BRUSU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella suis biovar 1 (strain 1330) GN=ubiE PE=3
SV=1
Length = 269
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEVSGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=ubiE PE=3 SV=1
Length = 269
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEVSGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella melitensis biotype 1 (strain 16M / ATCC
23456 / NCTC 10094) GN=ubiE PE=3 SV=1
Length = 269
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|C0RMK3|UBIE_BRUMB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella melitensis biotype 2 (strain ATCC 23457)
GN=ubiE PE=3 SV=1
Length = 269
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|Q576Q0|UBIE_BRUAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus biovar 1 (strain 9-941) GN=ubiE PE=3
SV=1
Length = 269
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|Q2YJM4|UBIE_BRUA2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus (strain 2308) GN=ubiE PE=3 SV=1
Length = 269
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|B2SC50|UBIE_BRUA1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus (strain S19) GN=ubiE PE=3 SV=1
Length = 269
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 78/150 (52%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
>sp|Q5HYK3|COQ5_HUMAN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Homo sapiens GN=COQ5 PE=1 SV=2
Length = 327
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 84/178 (47%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYVD-----------KLPPNTLSEHCAPH------------VTVADINRAML 47
GDIAFRFLNYV + N E A V V DIN+ ML
Sbjct: 118 GDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
VG+Q+A +A G R L ++
Sbjct: 178 KVGKQKA----------------------------------LAQGYR------AGLAWVL 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN ++
Sbjct: 198 GDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLI 255
>sp|A9WW74|UBIE_BRUSI Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
GN=ubiE PE=3 SV=1
Length = 269
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 77/150 (51%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 126
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I+ I N L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 127 ----------------------IKKGLIDN--LEFVEANAEELPFEDNSFDAYTIAFGIR 162
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAY VLKPGGRFLCLEFS V
Sbjct: 163 NVPHIDKALSEAYCVLKPGGRFLCLEFSEV 192
>sp|Q6G577|UBIE_BARHE Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella henselae (strain ATCC 49882 / Houston 1)
GN=ubiE PE=3 SV=1
Length = 260
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 78/155 (50%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR LN + H TV DIN +ML VG++RA
Sbjct: 84 GDIAFRILN----------ASRQKAHATVLDINGSMLSVGKKRA---------------- 117
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
E N P + F+EANAE LP E S+ AYTIAFGIR
Sbjct: 118 EKNGLA------------------------PLIDFVEANAEHLPFEDQSFDAYTIAFGIR 153
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV ID+AL EA+RVLKPGGRFLCLEFS+V +L
Sbjct: 154 NVPHIDQALREAFRVLKPGGRFLCLEFSNVEMPLL 188
>sp|Q98GV1|UBIE_RHILO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium loti (strain MAFF303099) GN=ubiE PE=3 SV=1
Length = 258
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 78/155 (50%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR ++ + H H TV DIN +ML VG RA+ + L
Sbjct: 82 GDIAFRIVD----------ASHGNAHATVLDINGSMLGVGRDRAQK-----------KGL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N + F+EANAEELP ++ AYTIAFGIR
Sbjct: 121 SGNTD-----------------------------FVEANAEELPFADATFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RID ALSEA+RVLKPGGRFLCLEFS V +L
Sbjct: 152 NVPRIDVALSEAFRVLKPGGRFLCLEFSEVEMPLL 186
>sp|B8IJ00|UBIE_METNO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Methylobacterium nodulans (strain ORS2060 / LMG
21967) GN=ubiE PE=3 SV=1
Length = 252
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 77/151 (50%), Gaps = 51/151 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR L P T HVTV DIN AML VG +RA D F
Sbjct: 76 GDIAFRALQ---AGGPET-------HVTVLDINDAMLAVGRERAGDRFA----------- 114
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
R+ F+ NAE LP+ S+ AYTIAFGIR
Sbjct: 115 ------------------------------GRIDFVAGNAEALPLPDGSFDAYTIAFGIR 144
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
NV RI++AL+EAYRVL+PGGRFLCLEFSHV+
Sbjct: 145 NVPRIERALAEAYRVLQPGGRFLCLEFSHVD 175
>sp|Q5RBK6|COQ5_PONAB 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Pongo abelii GN=COQ5 PE=2 SV=1
Length = 327
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 84/178 (47%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYVD-----------KLPPNTLSEHCAPH------------VTVADINRAML 47
GDIAFRFLNYV + N E A V + DIN+ ML
Sbjct: 118 GDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVMCDINKEML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
VG+Q+A +A G R L ++
Sbjct: 178 KVGKQKA----------------------------------LAQGYR------AGLAWVL 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VNN ++
Sbjct: 198 GDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLI 255
>sp|A6WYI0|UBIE_OCHA4 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
NCTC 12168) GN=ubiE PE=3 SV=1
Length = 263
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 77/150 (51%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA
Sbjct: 87 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA---------------- 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
I G+ + L F+EA+AEELP E S+ AYTI+FGIR
Sbjct: 121 ------------------IKKGLAD------NLEFVEASAEELPFEDASFDAYTISFGIR 156
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 157 NVPHIDKALSEAYRVLKPGGRFLCLEFSEV 186
>sp|Q6G1I2|UBIE_BARQU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella quintana (strain Toulouse) GN=ubiE PE=3
SV=1
Length = 260
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 78/155 (50%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR LN K H TV DIN +ML VG++RA+ P+ +
Sbjct: 84 GDIAFRILNASRK----------KAHATVLDINSSMLSVGKKRAQKNGLAPLTD------ 127
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
F+EANAE LP E S+ AYTIAFGIR
Sbjct: 128 ----------------------------------FVEANAEHLPFEDQSFDAYTIAFGIR 153
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV I++AL EA+RVLKPGGRFLCLEFS+V +L
Sbjct: 154 NVPHINQALREAFRVLKPGGRFLCLEFSNVEMPLL 188
>sp|A9ILA7|UBIE_BART1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
GN=ubiE PE=3 SV=1
Length = 260
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 75/150 (50%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR L + H TV DIN +ML VG+QRA+ P+
Sbjct: 84 GDIAFRILK----------ASRQKAHATVLDINGSMLSVGKQRAQKNGLAPL-------- 125
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+ F+EANAE LP E S+ AYTIAFGIR
Sbjct: 126 --------------------------------IDFVEANAEHLPFEDQSFDAYTIAFGIR 153
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV ID+AL EA+RVLKPGGRFLCLEFS+V
Sbjct: 154 NVPHIDQALREAFRVLKPGGRFLCLEFSNV 183
>sp|Q9CXI0|COQ5_MOUSE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Mus musculus GN=Coq5 PE=2 SV=2
Length = 327
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 81/178 (45%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYVD-----------------------KLPPNTLSEHCAPHVTVADINRAML 47
GDIAFRFL+YV K N TV DINR ML
Sbjct: 118 GDIAFRFLSYVQAQHQRRQRRQLRTQQNLSWEEIAKKYQNEEDSLGGSLATVCDINREML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
VG+Q+A D +T L ++
Sbjct: 178 KVGKQKALD----------------------------QGHTAG------------LAWVL 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + DS+ YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEF VN+ ++
Sbjct: 198 GDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFGQVNDPLI 255
>sp|Q4V7R3|COQ5_XENLA 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Xenopus laevis GN=coq5 PE=2 SV=1
Length = 310
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 80/179 (44%), Gaps = 64/179 (35%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEH------------------------CAPHVTVADINRAM 46
GDI+FRF+NY+ + + + DIN+ M
Sbjct: 100 GDISFRFINYIRAQREKWIRQELKFQQDLSWPDISKTYQNKEEGSLMGSRAVICDINKEM 159
Query: 47 LDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFL 106
L VG Q++ RL + E L ++
Sbjct: 160 LKVGLQKS----------LRLGYSEG------------------------------LSWV 179
Query: 107 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP D + YTIAFGIRNVT I++AL EAYRVLKPGGRFLCLEFSHVNN +L
Sbjct: 180 AGDAEELPFGDDKFDVYTIAFGIRNVTHIEQALQEAYRVLKPGGRFLCLEFSHVNNPLL 238
>sp|Q2KDB0|UBIE_RHIEC Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ubiE
PE=3 SV=1
Length = 258
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 77/155 (49%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + H TV DIN +ML VG +RA + L
Sbjct: 82 GDIAFRIVEASGR----------QAHATVLDINGSMLGVGAERAEK-----------KKL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N L F+EANAEELP E+ S+ AYTIAFGIR
Sbjct: 121 SGN-----------------------------LTFVEANAEELPFEAASFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RIDKALSEAYRVLK GGR L LEFS V+ +L
Sbjct: 152 NVPRIDKALSEAYRVLKRGGRLLVLEFSEVDMPLL 186
>sp|Q54VN2|COQ5_DICDI 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Dictyostelium discoideum GN=coq5 PE=3 SV=1
Length = 314
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 50/171 (29%)
Query: 11 GDIAFRFLNYVDKLP---PN----------TLSEHCAPH-VTVADINRAMLDVGEQRARD 56
GDI+FRFL+ + P PN L P TV DIN++ML+ G++R +
Sbjct: 110 GDISFRFLDKIKTSPNYFPNINKSNNGGGEVLKSSSLPSSATVFDINQSMLNEGKKRGLN 169
Query: 57 LFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE 116
YT D +P + +++ N+E+LP +
Sbjct: 170 ----------------------------KGYT--------DQSDPSIDWVQGNSEQLPFK 193
Query: 117 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
++++ YT++FGIRN T ID+ L EAYRVLKPGGRFLCLEFS V N +L++
Sbjct: 194 DNTFNCYTVSFGIRNCTNIDQVLREAYRVLKPGGRFLCLEFSQVPNPLLRF 244
>sp|Q4G064|COQ5_RAT 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Rattus norvegicus GN=Coq5 PE=2 SV=1
Length = 327
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 83/178 (46%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYVD-----------KLPPNTLSEHCAPH------------VTVADINRAML 47
GDIAFRFL+YV + N E A V V DINR ML
Sbjct: 118 GDIAFRFLSYVQTQHERKQRRQLRTRQNLSWEEIARKYQSKEDPLGGSLVMVCDINREML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
VG+Q+A +A G L ++
Sbjct: 178 KVGKQKA----------------------------------LARG------HTAGLAWVL 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + D + YTIAFGIRNVT ID+AL EA+RVLKPGGRFLCLEFS VN+ ++
Sbjct: 198 GDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVNDPLI 255
>sp|Q1MME0|UBIE_RHIL3 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium leguminosarum bv. viciae (strain 3841)
GN=ubiE PE=3 SV=1
Length = 258
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 76/155 (49%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + H TV DIN +ML VG +RA + L
Sbjct: 82 GDIAFRIVEASGR----------QAHATVLDINGSMLGVGAERAEK-----------KKL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N L F+EANAEELP E+ S+ AYTIAFGIR
Sbjct: 121 SGN-----------------------------LTFVEANAEELPFEAGSFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RID ALSEAYRVLK GGR L LEFS V+ +L
Sbjct: 152 NVPRIDAALSEAYRVLKRGGRLLVLEFSEVDMPLL 186
>sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=ubiE PE=3 SV=1
Length = 259
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 81/155 (52%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+AFR + ++L H TV DIN +ML VGE+RA +L
Sbjct: 83 GDVAFRIIEASNRLA----------HATVLDINGSMLAVGEERA--------AKKKL--- 121
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
SD+ L F+EANAEELP E++++ AYT+AFGIR
Sbjct: 122 ----------SDN-------------------LTFVEANAEELPFEANTFDAYTVAFGIR 152
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RID AL EAYRVLK GGR L LEFS V+ +L
Sbjct: 153 NVPRIDVALKEAYRVLKRGGRLLVLEFSEVDMPLL 187
>sp|Q66L51|COQ5_DANRE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Danio rerio GN=coq5 PE=2 SV=1
Length = 327
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 81/178 (45%), Gaps = 63/178 (35%)
Query: 11 GDIAFRFLNYV--------------------DKLPPNTLSEHCAP---HVTVADINRAML 47
GDI+FRFL Y + + +S+ P V DIN+ ML
Sbjct: 118 GDISFRFLEYTRSMYDRQQRLRAKSQQTPSWKDIAGHYVSDEEGPPQSRAVVCDINKEML 177
Query: 48 DVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLE 107
VG+QRA D GI L ++
Sbjct: 178 KVGKQRAEDA----------------------------------GI------TTGLSWVA 197
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+AEELP + D + YTIAFGIRNVT I++AL EA+RVLKPGGRF+CLEFS V N +L
Sbjct: 198 GDAEELPFDDDQFDMYTIAFGIRNVTHIEQALQEAFRVLKPGGRFMCLEFSKVTNPLL 255
>sp|B3PZ92|UBIE_RHIE6 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium etli (strain CIAT 652) GN=ubiE PE=3 SV=1
Length = 258
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 77/155 (49%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + H TV DIN +ML VG +RA + L
Sbjct: 82 GDIAFRIVEASGR----------QAHATVLDINGSMLGVGAERAEK-----------KKL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
AN L F+EANAEELP E+ S+ AYTIAFGIR
Sbjct: 121 SAN-----------------------------LTFVEANAEELPFEAASFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RID AL+EAYRVLK GGR L LEFS V+ +L
Sbjct: 152 NVPRIDVALAEAYRVLKRGGRLLVLEFSEVDMPLL 186
>sp|B9JZF4|UBIE_AGRVS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium vitis (strain S4 / ATCC BAA-846)
GN=ubiE PE=3 SV=1
Length = 258
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 79/162 (48%), Gaps = 55/162 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + +L H TV DIN +ML VG++RA+ + L
Sbjct: 82 GDIAFRIIEASRRLA----------HATVLDINGSMLGVGQERAQK-----------KGL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N L F+EANAE LP E++ + AYTIAFGIR
Sbjct: 121 SDN-----------------------------LTFVEANAEALPFEANQFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML-----QW 167
NV RID ALSEAYRVLK GGR L LEFS V +L QW
Sbjct: 152 NVPRIDVALSEAYRVLKRGGRLLVLEFSEVQMPLLDRFYDQW 193
>sp|B5ZYK8|UBIE_RHILW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304)
GN=ubiE PE=3 SV=1
Length = 258
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 75/155 (48%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + H TV DIN +ML VG +RA + L
Sbjct: 82 GDIAFRIVEASGR----------QAHATVLDINGSMLGVGAERAEK-----------KKL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N L F+EANAEELP E S+ AYTIAFGIR
Sbjct: 121 SGN-----------------------------LTFVEANAEELPFEPASFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RID ALSEAYRVLK GGR L LEFS V+ +L
Sbjct: 152 NVPRIDAALSEAYRVLKRGGRLLVLEFSEVDMPLL 186
>sp|B9J7S8|UBIE_AGRRK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
GN=ubiE PE=3 SV=1
Length = 258
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 74/151 (49%), Gaps = 50/151 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + ++L H TV DIN +ML VG +RA +L
Sbjct: 82 GDIAFRIVEASNRLA----------HATVLDINGSMLGVGAERA--------AKKKL--- 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
L F+EANAEELP E +S+ AYTIAFGIR
Sbjct: 121 -----------------------------TDNLTFVEANAEELPFEPNSFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
NV RID AL EAYRVLK GGR L LEFS V+
Sbjct: 152 NVPRIDVALKEAYRVLKRGGRLLVLEFSEVD 182
>sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium meliloti (strain 1021) GN=ubiE PE=3 SV=2
Length = 258
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 77/155 (49%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + H TV DIN +ML VG +RAR + +
Sbjct: 82 GDIAFRIVERSGR----------KAHATVLDINGSMLSVGAERARK-----------KGI 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
EAN L F+EANAE+LP ++S+ AYTIAFGIR
Sbjct: 121 EAN-----------------------------LDFVEANAEDLPFAANSFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RI+ AL EAYRVLK GGR L LEFS V +L
Sbjct: 152 NVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLL 186
>sp|B3Q619|UBIE_RHOPT Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodopseudomonas palustris (strain TIE-1) GN=ubiE
PE=3 SV=1
Length = 253
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 73/151 (48%), Gaps = 50/151 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR + H TV DIN ML+VG QRA +
Sbjct: 77 GDISFRAAK----------ASGAGFHSTVCDINTDMLEVGRQRAVE-------------- 112
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
RN+D ++ F+E NAE L + S+ AYTIAFGIR
Sbjct: 113 -----------------------RNLD---DKVDFVEGNAESLQFDDRSFDAYTIAFGIR 146
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
NV RID AL EAYRVLKPG RFLCLEFS V+
Sbjct: 147 NVPRIDLALKEAYRVLKPGSRFLCLEFSSVD 177
>sp|Q6NDM2|UBIE_RHOPA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=ubiE PE=3 SV=1
Length = 253
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 73/151 (48%), Gaps = 50/151 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR + H TV DIN ML+VG QRA +
Sbjct: 77 GDISFRAAK----------ASGAGFHSTVCDINTDMLEVGRQRAVE-------------- 112
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
RN+D ++ F+E NAE L + S+ AYTIAFGIR
Sbjct: 113 -----------------------RNLD---DKVDFVEGNAESLQFDDRSFDAYTIAFGIR 146
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
NV RID AL EAYRVLKPG RFLCLEFS V+
Sbjct: 147 NVPRIDLALKEAYRVLKPGSRFLCLEFSSVD 177
>sp|Q9LVC8|COQ5_ARATH 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Arabidopsis thaliana GN=COQ5 PE=2 SV=1
Length = 288
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 80/159 (50%), Gaps = 49/159 (30%)
Query: 10 PGDIAFRFLNYV--------DKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP 61
GD+AFR + V K+ +L E + V DIN ML+VG+QRA
Sbjct: 94 TGDVAFRIYDAVYSVKRRALQKVDEASLEE---TQIYVCDINPNMLNVGKQRA------- 143
Query: 62 VPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYS 121
AE G+R+ N L ++E +AE L + +S
Sbjct: 144 ------------AER---------------GLRD----NKSLVWVEGDAEALSFDDNSMD 172
Query: 122 AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
YTIAFGIRNVT I+KAL+EAYRVLK GGRFLCLE SHV
Sbjct: 173 GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211
>sp|A6UFF7|UBIE_SINMW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Sinorhizobium medicae (strain WSM419) GN=ubiE PE=3
SV=1
Length = 258
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 76/155 (49%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + TV DIN +ML VG +RAR + +
Sbjct: 82 GDIAFRIVERSGR----------KAQATVLDINGSMLSVGAERARK-----------KGI 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
EAN L F+EANAE+LP ++S+ AYTIAFGIR
Sbjct: 121 EAN-----------------------------LEFVEANAEDLPFAANSFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RI+ AL EAYRVLK GGR L LEFS V +L
Sbjct: 152 NVPRIEVALREAYRVLKRGGRLLVLEFSEVEMPLL 186
>sp|C3MCY6|UBIE_RHISN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1
Length = 258
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 75/155 (48%), Gaps = 50/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + H TV DIN +ML VG +RAR + L
Sbjct: 82 GDIAFRIVE----------ASGRKAHATVLDINGSMLAVGAERARK-----------KGL 120
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
N L F+EANAE+LP ++S+ AYTIAFGIR
Sbjct: 121 LGN-----------------------------LEFVEANAEDLPFAANSFDAYTIAFGIR 151
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
NV RI+ AL EAYRVLK GGR L LEFS V +L
Sbjct: 152 NVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLL 186
>sp|Q9X3X2|UBIE_ZYMMO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 /
ZM4 / CP4) GN=ubiE PE=3 SV=2
Length = 242
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 71/154 (46%), Gaps = 54/154 (35%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
GDIAFR Y +VT+ADIN AML+VG++RA
Sbjct: 69 TGDIAFRLAKY-------------GTNVTIADINPAMLEVGKKRA--------------- 100
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
IA I N L + E NAE L + + AYTIAFGI
Sbjct: 101 -------------------IARSIEN-------LTWKEENAEALSFNDNVFDAYTIAFGI 134
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 163
RNVT I KAL EA+RVLK GGRF C+EFS S
Sbjct: 135 RNVTHIQKALDEAWRVLKVGGRFFCMEFSQTKWS 168
>sp|Q5JNC0|COQ5_ORYSJ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Oryza sativa subsp. japonica GN=COQ5 PE=2 SV=1
Length = 294
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 78/156 (50%), Gaps = 43/156 (27%)
Query: 11 GDIAFRFLNYVDKLP----PNTLSE-HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNP 65
GD+AFR L ++ + TL++ + V DIN ML+VG++RA +
Sbjct: 101 GDVAFRALERINSVSHRAMQGTLTDIEEETQIYVCDINPNMLNVGKKRASER-------- 152
Query: 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI 125
+ E + L +++ +AE L E S YTI
Sbjct: 153 --GYKEGHC----------------------------LSWIQGDAEALSFEDGSMDGYTI 182
Query: 126 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
AFGIRNVT I+KALSEAYRVLK GGRFLCLE SHV+
Sbjct: 183 AFGIRNVTHIEKALSEAYRVLKRGGRFLCLELSHVD 218
>sp|Q2J2H9|UBIE_RHOP2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodopseudomonas palustris (strain HaA2) GN=ubiE PE=3
SV=1
Length = 253
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 69/151 (45%), Gaps = 50/151 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR + TV DIN ML+VG QRA + R L
Sbjct: 77 GDISFRAAK----------ASGAGFQATVCDINTDMLEVGRQRAVE-----------RHL 115
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+ E F+E NAE L SY AYTIAFGIR
Sbjct: 116 DGQVE-----------------------------FVEGNAEALQFPDKSYDAYTIAFGIR 146
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
NV RID AL EA+RVLKPG RFLCLEFS V+
Sbjct: 147 NVPRIDLALKEAHRVLKPGSRFLCLEFSSVD 177
>sp|Q13EN8|UBIE_RHOPS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodopseudomonas palustris (strain BisB5) GN=ubiE
PE=3 SV=1
Length = 253
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 68/151 (45%), Gaps = 50/151 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR + TV DIN ML+VG QRA R L
Sbjct: 77 GDISFRAAK----------ASGAGFQATVCDINTDMLEVGRQRAVQ-----------RHL 115
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+ + F+E NAE L SY AYTIAFGIR
Sbjct: 116 DGQVD-----------------------------FVEGNAEALQFPDRSYDAYTIAFGIR 146
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
NV RID AL EAYRVLKPG RFLCLEFS V+
Sbjct: 147 NVPRIDLALKEAYRVLKPGSRFLCLEFSSVD 177
>sp|P49017|COQ5_YEAST 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=COQ5 PE=1 SV=1
Length = 307
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 79/163 (48%), Gaps = 48/163 (29%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAF L++ + +T S + + DIN ML GE+RA
Sbjct: 123 GDIAFGLLDHAESKFGDTEST-----MDIVDINPDMLKEGEKRA---------------- 161
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGI 129
+E Y +PR+RFL +N E+L I+SDS YT++FGI
Sbjct: 162 --------MEQGKY-------------FKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGI 200
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML-----QW 167
RN T I K L+ AYRVLKPGG F CLEFS + N ++ QW
Sbjct: 201 RNFTDIQKGLNTAYRVLKPGGIFYCLEFSKIENPLMDFAYQQW 243
>sp|B9KQJ8|UBIE_RHOSK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
GN=ubiE PE=3 SV=1
Length = 250
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 51/157 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FRFL K P TV D+ +ML G QRA
Sbjct: 75 GDISFRFL----KRAPGA-------EATVCDMTESMLVEGRQRA---------------- 107
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+A ++ RL ++ +A LP S+++ YTI+FGIR
Sbjct: 108 --DAAQMA----------------------DRLDWVVGDAMALPFASNTFDVYTISFGIR 143
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVTR+ AL+EAYRVLKPGGR + LEFS + N M+QW
Sbjct: 144 NVTRVQDALNEAYRVLKPGGRLMVLEFSQLPNPMMQW 180
>sp|Q3IY65|UBIE_RHOS4 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
NCIB 8253 / DSM 158) GN=ubiE PE=3 SV=1
Length = 250
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 51/157 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FRFL K P TV D+ +ML G QRA
Sbjct: 75 GDISFRFL----KRAPGA-------EATVCDMTESMLVEGRQRA---------------- 107
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+A ++ RL ++ +A LP S+++ YTI+FGIR
Sbjct: 108 --DAAQMA----------------------DRLDWVVGDAMALPFASNTFDVYTISFGIR 143
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVTR+ AL+EAYRVLKPGGR + LEFS + N M+QW
Sbjct: 144 NVTRVQDALNEAYRVLKPGGRLMVLEFSQLPNPMMQW 180
>sp|A3PFL1|UBIE_RHOS1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=ubiE PE=3 SV=1
Length = 250
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 51/157 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FRFL K P TV D+ +ML G QRA
Sbjct: 75 GDISFRFL----KRAPGA-------EATVCDMTESMLVEGRQRA---------------- 107
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+A ++ RL ++ +A LP S+++ YTI+FGIR
Sbjct: 108 --DAAQMA----------------------DRLDWVVGDAMALPFASNTFDVYTISFGIR 143
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVTR+ AL+EAYRVLKPGGR + LEFS + N M+QW
Sbjct: 144 NVTRVQDALNEAYRVLKPGGRLMVLEFSQLPNPMMQW 180
>sp|A4YJH0|UBIE_BRASO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bradyrhizobium sp. (strain ORS278) GN=ubiE PE=3 SV=1
Length = 253
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 68/150 (45%), Gaps = 50/150 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FR H TV DIN ML+VG QRA +
Sbjct: 77 GDISFRAAK----------KAGAGFHATVCDINGDMLEVGRQRALKQYL----------- 115
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+ R+ F+E NAE L S+ AYTIAFGIR
Sbjct: 116 -----------------------------DDRVSFVEGNAESLAFPDRSFDAYTIAFGIR 146
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
NV +ID AL+EAYRVLK GGRFLCLEFS V
Sbjct: 147 NVPQIDLALAEAYRVLKHGGRFLCLEFSTV 176
>sp|Q1RJY5|UBIE_RICBR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia bellii (strain RML369-C) GN=ubiE PE=3 SV=1
Length = 248
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L+F A+AEELP +S+ YTIAFGIRNV I+KAL EAYRVLKP G+F+CLEFS V
Sbjct: 114 LKFTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKE 173
Query: 163 SMLQ 166
S+LQ
Sbjct: 174 SLLQ 177
>sp|A8GXR2|UBIE_RICB8 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia bellii (strain OSU 85-389) GN=ubiE PE=3
SV=1
Length = 248
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
L+F A+AEELP +S+ YTIAFGIRNV I+KAL EAYRVLKP G+F+CLEFS V
Sbjct: 114 LKFTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKE 173
Query: 163 SMLQ 166
S+LQ
Sbjct: 174 SLLQ 177
>sp|A4WVR7|UBIE_RHOS5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=ubiE PE=3 SV=1
Length = 250
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 75/157 (47%), Gaps = 51/157 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDI+FRFL K P H TV D+ +ML G QRA
Sbjct: 75 GDISFRFL----KRAPGA-------HATVCDMTESMLVEGRQRA---------------- 107
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+A ++ RL ++ +A LP S+++ YTI+FGIR
Sbjct: 108 --DAAQMA----------------------DRLDWVVGDAMALPFASNTFDVYTISFGIR 143
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
NVTR+ AL+EA+RVLKPGGR + LEFS + N +QW
Sbjct: 144 NVTRVQDALNEAFRVLKPGGRLMVLEFSQLPNPAMQW 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,799,154
Number of Sequences: 539616
Number of extensions: 2474829
Number of successful extensions: 7776
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 6749
Number of HSP's gapped (non-prelim): 915
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)