Query psy889
Match_columns 167
No_of_seqs 107 out of 1174
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 22:01:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 1.8E-24 4E-29 166.0 9.3 113 1-165 53-165 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 1.5E-23 3.2E-28 161.6 7.2 115 1-166 49-163 (233)
3 KOG1540|consensus 99.9 6.9E-23 1.5E-27 156.3 9.0 124 1-167 102-225 (296)
4 PLN02233 ubiquinone biosynthes 99.8 1.5E-19 3.2E-24 141.7 10.0 115 1-163 75-189 (261)
5 PF08241 Methyltransf_11: Meth 99.8 1E-18 2.2E-23 115.4 7.4 95 4-154 1-95 (95)
6 PF13847 Methyltransf_31: Meth 99.8 5.6E-18 1.2E-22 122.3 9.5 106 1-158 5-112 (152)
7 PLN02244 tocopherol O-methyltr 99.8 8.2E-18 1.8E-22 136.3 11.3 108 1-160 120-227 (340)
8 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.8E-18 3.8E-23 131.7 6.2 106 1-161 61-166 (243)
9 TIGR02752 MenG_heptapren 2-hep 99.7 1.1E-17 2.4E-22 128.3 10.0 112 1-163 47-158 (231)
10 PF12847 Methyltransf_18: Meth 99.7 2.2E-17 4.8E-22 112.8 8.2 105 1-156 3-111 (112)
11 PLN02396 hexaprenyldihydroxybe 99.7 2.5E-17 5.5E-22 132.3 9.3 105 2-159 134-238 (322)
12 PRK11036 putative S-adenosyl-L 99.7 7.9E-17 1.7E-21 125.7 8.8 106 1-159 46-152 (255)
13 PRK11873 arsM arsenite S-adeno 99.7 2.1E-16 4.5E-21 124.2 10.6 108 1-159 79-186 (272)
14 PTZ00098 phosphoethanolamine N 99.7 2E-16 4.2E-21 124.1 9.9 106 1-161 54-161 (263)
15 PF08242 Methyltransf_12: Meth 99.7 3.7E-18 8.1E-23 114.6 -0.3 97 4-152 1-99 (99)
16 PRK14103 trans-aconitate 2-met 99.7 1.7E-16 3.7E-21 123.8 8.9 98 1-158 31-128 (255)
17 PRK10258 biotin biosynthesis p 99.7 1.1E-16 2.5E-21 124.3 7.6 101 2-161 45-145 (251)
18 PRK11207 tellurite resistance 99.7 3.7E-16 8E-21 117.6 10.1 102 1-157 32-135 (197)
19 PRK05785 hypothetical protein; 99.7 1E-16 2.2E-21 123.2 7.1 101 2-165 54-154 (226)
20 PLN02336 phosphoethanolamine N 99.7 5.8E-16 1.2E-20 130.5 10.9 107 1-161 268-374 (475)
21 PRK15451 tRNA cmo(5)U34 methyl 99.7 8.9E-16 1.9E-20 119.3 11.1 111 1-162 58-170 (247)
22 smart00828 PKS_MT Methyltransf 99.6 1.8E-15 3.9E-20 115.5 10.9 106 1-158 1-106 (224)
23 TIGR00740 methyltransferase, p 99.6 2.1E-15 4.5E-20 116.5 10.5 110 1-161 55-166 (239)
24 PRK00107 gidB 16S rRNA methylt 99.6 2.2E-15 4.7E-20 112.6 10.0 102 1-159 47-148 (187)
25 TIGR00477 tehB tellurite resis 99.6 2E-15 4.3E-20 113.5 9.8 102 1-158 32-135 (195)
26 KOG1270|consensus 99.6 6.1E-16 1.3E-20 118.9 6.6 109 1-160 91-199 (282)
27 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.5E-15 3.3E-20 122.6 9.2 105 1-160 115-219 (340)
28 TIGR02072 BioC biotin biosynth 99.6 1.7E-15 3.6E-20 116.0 9.0 103 2-160 37-139 (240)
29 PRK01683 trans-aconitate 2-met 99.6 2E-15 4.4E-20 117.7 9.1 98 1-156 33-130 (258)
30 PF13649 Methyltransf_25: Meth 99.6 4.6E-16 1E-20 104.9 4.3 98 3-150 1-101 (101)
31 PRK15068 tRNA mo(5)U34 methylt 99.6 4.2E-15 9.1E-20 119.7 10.1 105 1-158 124-228 (322)
32 PF02353 CMAS: Mycolic acid cy 99.6 4.8E-15 1.1E-19 116.7 9.3 106 1-161 64-171 (273)
33 PRK00216 ubiE ubiquinone/menaq 99.6 1.1E-14 2.3E-19 111.6 10.8 112 1-162 53-164 (239)
34 PRK08317 hypothetical protein; 99.6 9.3E-15 2E-19 111.7 10.1 105 1-157 21-125 (241)
35 TIGR00138 gidB 16S rRNA methyl 99.6 9.9E-15 2.1E-19 108.6 9.9 99 1-156 44-142 (181)
36 COG2230 Cfa Cyclopropane fatty 99.6 9.3E-15 2E-19 114.6 10.2 109 1-164 74-184 (283)
37 TIGR00452 methyltransferase, p 99.6 9E-15 2E-19 117.1 9.6 104 1-157 123-226 (314)
38 PRK12335 tellurite resistance 99.6 1.1E-14 2.3E-19 115.6 9.9 99 2-156 123-223 (287)
39 PF13489 Methyltransf_23: Meth 99.6 3.1E-15 6.8E-20 107.8 5.7 95 1-159 24-118 (161)
40 PRK06922 hypothetical protein; 99.6 1E-14 2.2E-19 125.2 9.4 107 1-160 420-541 (677)
41 PRK00121 trmB tRNA (guanine-N( 99.6 8.4E-15 1.8E-19 110.7 8.0 104 1-156 42-156 (202)
42 KOG4300|consensus 99.6 1.3E-14 2.8E-19 108.2 8.3 106 2-160 79-186 (252)
43 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.2E-14 4.9E-19 108.8 9.7 109 1-162 41-149 (223)
44 COG4106 Tam Trans-aconitate me 99.6 1.4E-14 3E-19 108.7 8.0 97 2-156 33-129 (257)
45 TIGR02469 CbiT precorrin-6Y C5 99.6 3.9E-14 8.5E-19 97.9 9.5 101 1-156 21-122 (124)
46 smart00138 MeTrc Methyltransfe 99.5 1.3E-14 2.8E-19 113.9 6.9 130 1-156 101-242 (264)
47 PRK13944 protein-L-isoaspartat 99.5 1.2E-13 2.7E-18 104.5 9.5 100 1-156 74-173 (205)
48 TIGR00091 tRNA (guanine-N(7)-) 99.5 6.9E-14 1.5E-18 105.0 7.6 103 2-156 19-132 (194)
49 TIGR02716 C20_methyl_CrtF C-20 99.5 2.1E-13 4.4E-18 109.1 10.5 105 1-159 151-257 (306)
50 TIGR03587 Pse_Me-ase pseudamin 99.5 1.3E-13 2.9E-18 104.3 8.7 99 2-160 46-146 (204)
51 PRK13942 protein-L-isoaspartat 99.5 2.2E-13 4.8E-18 103.7 9.5 98 1-155 78-175 (212)
52 PRK11705 cyclopropane fatty ac 99.5 1.6E-13 3.5E-18 112.8 9.2 102 1-161 169-272 (383)
53 PRK06202 hypothetical protein; 99.5 1.6E-13 3.4E-18 105.6 8.1 106 2-160 63-170 (232)
54 TIGR01983 UbiG ubiquinone bios 99.5 3.5E-13 7.6E-18 102.8 9.4 105 1-159 47-152 (224)
55 PLN02336 phosphoethanolamine N 99.5 3.1E-13 6.8E-18 113.9 10.0 103 2-160 40-146 (475)
56 PRK11088 rrmA 23S rRNA methylt 99.5 1.2E-13 2.5E-18 108.9 6.8 96 2-158 88-183 (272)
57 PF05175 MTS: Methyltransferas 99.5 3.9E-13 8.4E-18 99.0 8.7 103 1-156 33-140 (170)
58 PRK08287 cobalt-precorrin-6Y C 99.5 6.5E-13 1.4E-17 99.0 9.8 101 1-158 33-133 (187)
59 TIGR00537 hemK_rel_arch HemK-r 99.4 7.2E-13 1.6E-17 98.1 9.9 124 1-160 21-144 (179)
60 PF03848 TehB: Tellurite resis 99.4 5.9E-13 1.3E-17 99.5 9.4 101 2-158 33-135 (192)
61 TIGR00080 pimt protein-L-isoas 99.4 6E-13 1.3E-17 101.4 9.5 98 1-155 79-176 (215)
62 PF05401 NodS: Nodulation prot 99.4 3.2E-13 6.9E-18 100.5 7.1 100 2-158 46-148 (201)
63 PLN03075 nicotianamine synthas 99.4 8.2E-13 1.8E-17 104.6 9.5 103 2-156 126-233 (296)
64 PLN02232 ubiquinone biosynthes 99.4 2.1E-13 4.6E-18 99.5 5.1 88 38-163 1-88 (160)
65 PRK05134 bifunctional 3-demeth 99.4 1.3E-12 2.7E-17 100.4 9.4 103 1-158 50-153 (233)
66 PRK00377 cbiT cobalt-precorrin 99.4 1.7E-12 3.6E-17 97.8 9.2 101 1-154 42-143 (198)
67 PRK09489 rsmC 16S ribosomal RN 99.4 1.5E-12 3.3E-17 105.6 9.4 100 2-156 199-303 (342)
68 PRK15001 SAM-dependent 23S rib 99.4 2.1E-12 4.5E-17 105.8 9.6 105 2-156 231-340 (378)
69 TIGR03840 TMPT_Se_Te thiopurin 99.4 3.2E-12 6.8E-17 97.4 9.8 117 2-160 37-156 (213)
70 TIGR02021 BchM-ChlM magnesium 99.4 3E-12 6.6E-17 97.6 9.6 98 1-154 57-156 (219)
71 PF13659 Methyltransf_26: Meth 99.4 1E-12 2.2E-17 90.3 6.4 106 1-156 2-115 (117)
72 PRK14121 tRNA (guanine-N(7)-)- 99.4 2.6E-12 5.6E-17 105.2 9.2 103 2-156 125-235 (390)
73 TIGR00406 prmA ribosomal prote 99.4 3.4E-12 7.3E-17 101.4 9.3 102 1-159 161-262 (288)
74 KOG1271|consensus 99.4 9.4E-13 2E-17 96.6 5.2 112 2-164 70-189 (227)
75 KOG2899|consensus 99.3 5.1E-12 1.1E-16 96.4 8.6 133 2-154 61-207 (288)
76 PRK14901 16S rRNA methyltransf 99.3 7E-12 1.5E-16 104.8 10.2 129 1-158 254-386 (434)
77 cd02440 AdoMet_MTases S-adenos 99.3 6.9E-12 1.5E-16 82.4 8.1 101 2-155 1-103 (107)
78 PRK07402 precorrin-6B methylas 99.3 8.5E-12 1.8E-16 93.7 9.5 102 1-158 42-144 (196)
79 TIGR00536 hemK_fam HemK family 99.3 8.7E-12 1.9E-16 98.8 10.0 130 2-159 117-246 (284)
80 PRK00517 prmA ribosomal protei 99.3 6.3E-12 1.4E-16 97.9 8.3 97 1-160 121-217 (250)
81 PRK11805 N5-glutamine S-adenos 99.3 9.8E-12 2.1E-16 99.6 9.5 130 2-159 136-265 (307)
82 TIGR03533 L3_gln_methyl protei 99.3 1.2E-11 2.6E-16 98.1 9.9 130 2-159 124-253 (284)
83 PF08003 Methyltransf_9: Prote 99.3 7.3E-12 1.6E-16 98.8 8.5 103 1-156 117-219 (315)
84 TIGR03534 RF_mod_PrmC protein- 99.3 1.1E-11 2.3E-16 95.9 9.2 126 2-154 90-215 (251)
85 PRK04266 fibrillarin; Provisio 99.3 1.3E-11 2.8E-16 94.9 9.4 97 1-154 74-174 (226)
86 PRK14904 16S rRNA methyltransf 99.3 1.1E-11 2.3E-16 104.0 9.7 128 1-159 252-380 (445)
87 KOG2361|consensus 99.3 2.3E-12 5E-17 98.2 5.0 116 2-166 74-193 (264)
88 TIGR01177 conserved hypothetic 99.3 1.3E-11 2.7E-16 99.8 9.5 112 1-158 184-296 (329)
89 TIGR00446 nop2p NOL1/NOP2/sun 99.3 1.2E-11 2.7E-16 97.0 9.1 129 1-158 73-201 (264)
90 TIGR03438 probable methyltrans 99.3 1.5E-11 3.2E-16 98.3 9.6 104 2-155 66-176 (301)
91 PRK00312 pcm protein-L-isoaspa 99.3 1.5E-11 3.3E-16 93.4 9.2 97 1-157 80-176 (212)
92 PRK11188 rrmJ 23S rRNA methylt 99.3 1.2E-11 2.7E-16 93.9 8.6 96 2-159 54-168 (209)
93 PRK14903 16S rRNA methyltransf 99.3 1.4E-11 3E-16 103.0 9.5 127 1-159 239-369 (431)
94 PRK14967 putative methyltransf 99.3 1.4E-11 3.1E-16 94.3 8.8 121 2-156 39-159 (223)
95 PRK13255 thiopurine S-methyltr 99.3 2.5E-11 5.5E-16 92.8 9.7 117 2-160 40-159 (218)
96 PRK14968 putative methyltransf 99.3 2.8E-11 6E-16 89.6 9.4 124 2-157 26-149 (188)
97 PRK07580 Mg-protoporphyrin IX 99.3 2.5E-11 5.5E-16 92.8 9.0 97 1-153 65-163 (230)
98 TIGR00563 rsmB ribosomal RNA s 99.3 3.4E-11 7.3E-16 100.5 10.2 130 1-159 240-371 (426)
99 COG2264 PrmA Ribosomal protein 99.3 1.9E-11 4.1E-16 96.8 8.2 101 1-158 164-265 (300)
100 COG2242 CobL Precorrin-6B meth 99.2 5.5E-11 1.2E-15 87.8 9.2 99 1-155 36-134 (187)
101 PLN02585 magnesium protoporphy 99.2 3.6E-11 7.8E-16 96.5 8.8 100 1-153 146-247 (315)
102 PRK13943 protein-L-isoaspartat 99.2 3.5E-11 7.6E-16 96.8 8.4 98 1-155 82-179 (322)
103 PRK10901 16S rRNA methyltransf 99.2 7.1E-11 1.5E-15 98.6 10.2 127 1-158 246-374 (427)
104 TIGR02081 metW methionine bios 99.2 3.2E-11 6.9E-16 90.4 7.1 88 1-148 15-104 (194)
105 PF01135 PCMT: Protein-L-isoas 99.2 2.5E-11 5.4E-16 92.2 5.8 98 1-155 74-171 (209)
106 PRK10611 chemotaxis methyltran 99.2 3.2E-11 6.9E-16 95.5 6.5 132 1-155 117-261 (287)
107 PRK09328 N5-glutamine S-adenos 99.2 1.2E-10 2.6E-15 91.4 9.4 130 1-158 110-239 (275)
108 PRK14902 16S rRNA methyltransf 99.2 1.4E-10 3.1E-15 97.2 10.4 128 1-158 252-381 (444)
109 COG2518 Pcm Protein-L-isoaspar 99.2 9.6E-11 2.1E-15 88.2 8.4 97 1-157 74-170 (209)
110 PRK14966 unknown domain/N5-glu 99.2 1.2E-10 2.6E-15 96.1 9.6 129 2-159 254-383 (423)
111 COG4123 Predicted O-methyltran 99.2 9.3E-11 2E-15 90.6 7.7 122 2-156 47-170 (248)
112 PF00891 Methyltransf_2: O-met 99.2 9.4E-11 2E-15 90.6 7.7 99 2-162 103-205 (241)
113 PF06325 PrmA: Ribosomal prote 99.2 7.4E-11 1.6E-15 93.8 6.8 101 1-160 163-263 (295)
114 TIGR00438 rrmJ cell division p 99.2 1.2E-10 2.7E-15 86.8 7.4 36 1-46 34-69 (188)
115 KOG1541|consensus 99.2 6.9E-11 1.5E-15 89.2 5.9 96 2-156 53-160 (270)
116 PF03291 Pox_MCEL: mRNA cappin 99.1 1.5E-10 3.3E-15 93.5 8.1 114 1-158 64-188 (331)
117 PTZ00146 fibrillarin; Provisio 99.1 3E-10 6.4E-15 89.9 9.3 99 1-154 134-235 (293)
118 PLN02781 Probable caffeoyl-CoA 99.1 1.7E-10 3.7E-15 89.1 7.3 101 1-154 70-176 (234)
119 PRK04457 spermidine synthase; 99.1 2E-10 4.2E-15 90.2 7.3 106 2-158 69-179 (262)
120 PF01739 CheR: CheR methyltran 99.1 3.6E-11 7.7E-16 90.5 2.9 133 1-155 33-174 (196)
121 KOG3010|consensus 99.1 1.5E-10 3.3E-15 88.3 6.1 99 2-154 36-135 (261)
122 PRK01544 bifunctional N5-gluta 99.1 5.6E-10 1.2E-14 95.0 10.2 130 2-159 141-271 (506)
123 COG2813 RsmC 16S RNA G1207 met 99.1 6E-10 1.3E-14 88.0 9.3 101 2-156 161-266 (300)
124 TIGR03704 PrmC_rel_meth putati 99.1 7.3E-10 1.6E-14 86.4 8.9 124 2-155 89-215 (251)
125 PRK00811 spermidine synthase; 99.1 4.5E-10 9.9E-15 89.1 7.8 106 2-154 79-189 (283)
126 PF06080 DUF938: Protein of un 99.1 5.9E-10 1.3E-14 83.8 7.9 102 2-155 28-140 (204)
127 PF07021 MetW: Methionine bios 99.1 2.9E-10 6.3E-15 84.5 5.9 87 1-147 15-103 (193)
128 COG2519 GCD14 tRNA(1-methylade 99.1 1.3E-09 2.8E-14 84.0 9.4 100 1-156 96-195 (256)
129 COG2890 HemK Methylase of poly 99.0 2.4E-09 5.2E-14 84.8 10.5 127 2-159 113-240 (280)
130 PF05891 Methyltransf_PK: AdoM 99.0 3.7E-10 8E-15 85.4 5.3 103 1-156 57-161 (218)
131 PHA03411 putative methyltransf 99.0 2.2E-09 4.8E-14 84.2 8.4 117 2-158 67-185 (279)
132 PRK15128 23S rRNA m(5)C1962 me 99.0 9.4E-10 2E-14 91.0 6.6 115 2-158 223-341 (396)
133 PRK13256 thiopurine S-methyltr 99.0 4.1E-09 9E-14 80.8 9.7 116 2-159 46-166 (226)
134 PF02390 Methyltransf_4: Putat 99.0 1.8E-09 3.9E-14 81.2 7.5 103 2-156 20-133 (195)
135 PF05219 DREV: DREV methyltran 99.0 1.3E-09 2.9E-14 84.3 6.5 90 2-154 97-186 (265)
136 smart00650 rADc Ribosomal RNA 99.0 1.7E-09 3.6E-14 79.4 6.5 41 2-55 16-56 (169)
137 KOG1975|consensus 99.0 1.4E-09 3.1E-14 86.3 6.2 108 2-156 120-237 (389)
138 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1.8E-09 3.8E-14 95.2 7.3 116 2-157 541-657 (702)
139 COG4976 Predicted methyltransf 98.9 5.5E-10 1.2E-14 84.9 3.0 101 2-161 128-230 (287)
140 KOG2940|consensus 98.9 1.8E-09 3.9E-14 82.2 5.4 102 2-158 75-176 (325)
141 COG1352 CheR Methylase of chem 98.9 4.2E-09 9.1E-14 82.7 7.7 133 1-155 98-240 (268)
142 PF08704 GCD14: tRNA methyltra 98.9 6.3E-09 1.4E-13 80.8 8.3 101 1-156 42-146 (247)
143 PRK00050 16S rRNA m(4)C1402 me 98.9 4E-09 8.6E-14 83.9 7.3 80 2-98 22-105 (296)
144 TIGR00417 speE spermidine synt 98.9 4.6E-09 1E-13 82.7 7.6 106 2-155 75-185 (270)
145 PF01596 Methyltransf_3: O-met 98.9 4.2E-09 9E-14 79.8 6.5 100 2-154 48-153 (205)
146 PLN02476 O-methyltransferase 98.9 8.7E-09 1.9E-13 81.3 8.4 100 2-154 121-226 (278)
147 PRK11933 yebU rRNA (cytosine-C 98.9 1.4E-08 3E-13 85.6 9.8 126 1-158 115-244 (470)
148 COG4122 Predicted O-methyltran 98.9 8.2E-09 1.8E-13 78.7 7.0 101 1-154 61-164 (219)
149 PLN02366 spermidine synthase 98.8 1E-08 2.2E-13 82.2 7.7 105 2-154 94-204 (308)
150 KOG2904|consensus 98.8 1.9E-08 4.1E-13 78.4 8.7 137 2-163 151-292 (328)
151 PLN02672 methionine S-methyltr 98.8 2.3E-08 5.1E-13 90.9 9.8 141 2-160 121-281 (1082)
152 PRK13168 rumA 23S rRNA m(5)U19 98.8 2.1E-08 4.5E-13 84.2 8.8 46 1-59 299-344 (443)
153 PF05724 TPMT: Thiopurine S-me 98.8 2.1E-08 4.6E-13 76.7 7.8 117 2-160 40-159 (218)
154 PRK03522 rumB 23S rRNA methylu 98.8 1.8E-08 3.9E-13 81.1 7.4 45 2-59 176-220 (315)
155 PHA03412 putative methyltransf 98.8 1.9E-08 4.1E-13 77.4 7.1 75 2-95 52-126 (241)
156 PRK01581 speE spermidine synth 98.8 1.4E-08 2.9E-13 82.7 6.5 109 2-155 153-267 (374)
157 PRK03612 spermidine synthase; 98.8 1.5E-08 3.2E-13 86.7 6.8 107 2-155 300-414 (521)
158 PF10294 Methyltransf_16: Puta 98.8 2.6E-08 5.7E-13 73.5 7.2 106 1-156 47-156 (173)
159 COG0220 Predicted S-adenosylme 98.8 2.9E-08 6.3E-13 76.3 7.3 103 2-156 51-164 (227)
160 PRK10909 rsmD 16S rRNA m(2)G96 98.8 5.4E-08 1.2E-12 73.4 8.5 46 2-59 56-101 (199)
161 PLN02589 caffeoyl-CoA O-methyl 98.7 2.7E-08 5.8E-13 77.4 6.6 101 1-154 81-188 (247)
162 COG1041 Predicted DNA modifica 98.7 5.7E-08 1.2E-12 78.2 7.5 111 2-157 200-311 (347)
163 PF05148 Methyltransf_8: Hypot 98.6 5.5E-08 1.2E-12 73.3 4.5 53 105-158 108-160 (219)
164 TIGR00479 rumA 23S rRNA (uraci 98.6 1.7E-07 3.7E-12 78.4 7.2 73 2-92 295-371 (431)
165 PF02475 Met_10: Met-10+ like- 98.6 2.1E-07 4.6E-12 70.2 6.8 97 2-154 104-200 (200)
166 PF12147 Methyltransf_20: Puta 98.6 7E-07 1.5E-11 70.4 9.7 114 1-165 137-256 (311)
167 COG2263 Predicted RNA methylas 98.5 2.6E-07 5.6E-12 68.5 6.7 71 2-93 48-118 (198)
168 PF01170 UPF0020: Putative RNA 98.5 4.6E-07 9.9E-12 67.3 8.1 111 2-154 31-149 (179)
169 COG3963 Phospholipid N-methylt 98.5 3.3E-07 7.2E-12 66.7 6.8 104 2-161 51-161 (194)
170 TIGR02085 meth_trns_rumB 23S r 98.5 2.7E-07 5.9E-12 76.0 7.2 57 2-76 236-292 (374)
171 PRK01544 bifunctional N5-gluta 98.5 2.8E-07 6E-12 78.7 7.4 103 2-156 350-462 (506)
172 COG0144 Sun tRNA and rRNA cyto 98.5 9.1E-07 2E-11 72.4 10.1 131 1-159 158-291 (355)
173 TIGR00006 S-adenosyl-methyltra 98.5 5.9E-07 1.3E-11 71.8 7.8 80 2-98 23-107 (305)
174 PRK14896 ksgA 16S ribosomal RN 98.5 5E-07 1.1E-11 70.7 6.9 71 2-94 32-102 (258)
175 PRK04338 N(2),N(2)-dimethylgua 98.5 5.9E-07 1.3E-11 74.1 7.5 98 2-155 60-157 (382)
176 KOG1499|consensus 98.5 3.4E-07 7.4E-12 73.6 5.9 99 2-153 63-164 (346)
177 KOG3420|consensus 98.5 1.5E-07 3.2E-12 67.0 3.4 76 1-94 50-125 (185)
178 PRK00274 ksgA 16S ribosomal RN 98.5 3.9E-07 8.3E-12 71.9 6.2 72 1-93 44-115 (272)
179 COG0275 Predicted S-adenosylme 98.5 1.2E-06 2.7E-11 69.2 8.9 81 2-98 26-111 (314)
180 PF07942 N2227: N2227-like pro 98.5 5.5E-07 1.2E-11 70.7 6.9 129 1-153 58-199 (270)
181 TIGR00095 RNA methyltransferas 98.4 1.3E-06 2.8E-11 65.5 8.4 47 1-59 51-97 (189)
182 PF10672 Methyltrans_SAM: S-ad 98.4 2E-07 4.4E-12 73.9 4.2 114 1-159 125-241 (286)
183 PLN02823 spermine synthase 98.4 6.3E-07 1.4E-11 72.7 7.1 105 2-154 106-218 (336)
184 PF03141 Methyltransf_29: Puta 98.4 1.4E-07 3.1E-12 78.9 3.3 46 111-156 173-219 (506)
185 PF05185 PRMT5: PRMT5 arginine 98.4 4.4E-07 9.5E-12 76.3 5.9 104 2-153 189-294 (448)
186 COG0421 SpeE Spermidine syntha 98.4 7.3E-07 1.6E-11 70.6 6.8 105 2-155 79-189 (282)
187 TIGR00478 tly hemolysin TlyA f 98.4 4.4E-07 9.6E-12 69.8 5.4 36 2-49 78-113 (228)
188 COG2520 Predicted methyltransf 98.4 1E-06 2.2E-11 71.3 7.6 105 2-162 191-295 (341)
189 PTZ00338 dimethyladenosine tra 98.4 8.4E-07 1.8E-11 70.8 6.7 73 2-93 39-111 (294)
190 COG1092 Predicted SAM-dependen 98.4 2.1E-06 4.6E-11 70.8 9.1 116 1-159 219-339 (393)
191 COG0500 SmtA SAM-dependent met 98.4 5.3E-06 1.2E-10 57.0 9.9 105 3-161 52-160 (257)
192 KOG1269|consensus 98.3 4.6E-07 1E-11 74.1 4.2 107 2-160 113-219 (364)
193 PF03602 Cons_hypoth95: Conser 98.3 6.2E-07 1.3E-11 66.8 4.5 47 1-59 44-90 (183)
194 KOG3045|consensus 98.3 1E-06 2.2E-11 68.4 5.6 55 103-158 212-266 (325)
195 PF09243 Rsm22: Mitochondrial 98.3 1.8E-06 3.8E-11 68.3 7.0 108 1-161 35-144 (274)
196 PRK11727 23S rRNA mA1618 methy 98.3 2.2E-06 4.8E-11 69.1 7.4 82 1-97 116-203 (321)
197 PF02527 GidB: rRNA small subu 98.3 2.5E-06 5.4E-11 63.7 6.8 98 2-156 51-148 (184)
198 KOG3191|consensus 98.3 1.4E-05 2.9E-10 59.1 10.4 120 3-158 47-170 (209)
199 KOG1661|consensus 98.3 2.4E-06 5.1E-11 64.4 6.5 109 2-156 85-193 (237)
200 KOG3987|consensus 98.3 4.1E-07 8.9E-12 68.5 2.4 91 1-154 114-205 (288)
201 TIGR00755 ksgA dimethyladenosi 98.3 3.2E-06 7E-11 65.9 7.5 42 1-55 31-72 (253)
202 KOG1663|consensus 98.2 6.3E-06 1.4E-10 62.9 8.1 100 2-154 76-181 (237)
203 COG2521 Predicted archaeal met 98.2 4.7E-07 1E-11 69.3 1.8 101 2-154 137-243 (287)
204 PRK05031 tRNA (uracil-5-)-meth 98.2 1.8E-06 3.9E-11 70.8 4.4 57 2-76 209-265 (362)
205 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 2.9E-06 6.3E-11 67.4 5.5 126 1-158 87-221 (283)
206 TIGR02143 trmA_only tRNA (urac 98.2 2.1E-06 4.6E-11 70.2 4.4 57 2-76 200-256 (353)
207 PF01564 Spermine_synth: Sperm 98.2 3E-06 6.5E-11 66.0 4.9 107 2-156 79-191 (246)
208 PF09445 Methyltransf_15: RNA 98.1 3.5E-06 7.5E-11 61.6 4.7 75 2-93 2-79 (163)
209 TIGR03439 methyl_EasF probable 98.1 1.4E-05 3E-10 64.5 8.5 47 2-55 79-125 (319)
210 KOG3178|consensus 98.1 9.9E-06 2.1E-10 65.3 7.2 98 2-161 180-280 (342)
211 PRK00536 speE spermidine synth 98.1 1.4E-05 3E-10 62.7 7.7 96 1-154 74-169 (262)
212 PF01795 Methyltransf_5: MraW 98.1 1.1E-06 2.3E-11 70.3 1.1 79 2-97 23-107 (310)
213 COG2265 TrmA SAM-dependent met 98.0 1E-05 2.2E-10 67.7 6.1 78 1-96 295-375 (432)
214 TIGR00308 TRM1 tRNA(guanine-26 98.0 1.8E-05 4E-10 65.1 6.9 99 2-155 47-146 (374)
215 KOG1500|consensus 98.0 2E-05 4.4E-10 63.5 6.8 98 2-154 180-280 (517)
216 KOG1122|consensus 98.0 3.8E-05 8.3E-10 63.3 8.4 128 2-159 244-374 (460)
217 PF02384 N6_Mtase: N-6 DNA Met 97.9 4.2E-05 9E-10 61.2 7.6 87 2-95 49-137 (311)
218 KOG1331|consensus 97.9 1.4E-05 3.1E-10 62.7 4.8 98 2-161 48-148 (293)
219 PRK11783 rlmL 23S rRNA m(2)G24 97.9 9.3E-05 2E-09 65.7 9.9 58 2-59 193-281 (702)
220 PF05958 tRNA_U5-meth_tr: tRNA 97.9 3.4E-05 7.4E-10 63.1 6.4 58 2-77 199-256 (352)
221 COG0357 GidB Predicted S-adeno 97.9 6.2E-05 1.3E-09 57.4 6.9 97 2-154 70-166 (215)
222 TIGR02987 met_A_Alw26 type II 97.8 0.0001 2.3E-09 63.2 9.1 88 2-97 34-126 (524)
223 KOG2352|consensus 97.8 6E-05 1.3E-09 63.2 7.2 114 1-158 50-163 (482)
224 PF03059 NAS: Nicotianamine sy 97.8 0.0001 2.2E-09 58.2 8.2 104 2-155 123-229 (276)
225 COG0030 KsgA Dimethyladenosine 97.8 6.1E-05 1.3E-09 58.9 6.5 72 2-93 33-105 (259)
226 KOG2915|consensus 97.8 0.00014 3.1E-09 56.9 8.2 48 2-59 108-155 (314)
227 PRK04148 hypothetical protein; 97.8 6E-05 1.3E-09 53.3 5.4 40 1-53 18-58 (134)
228 PF11968 DUF3321: Putative met 97.8 3.2E-05 6.9E-10 58.7 4.0 36 116-151 101-139 (219)
229 PF01728 FtsJ: FtsJ-like methy 97.8 9.9E-05 2.2E-09 54.5 6.6 35 1-45 25-59 (181)
230 KOG0820|consensus 97.7 8.4E-05 1.8E-09 58.3 6.2 45 1-58 60-104 (315)
231 COG0742 N6-adenine-specific me 97.7 0.00014 3.1E-09 54.1 6.7 46 2-59 46-91 (187)
232 PF08123 DOT1: Histone methyla 97.7 6.6E-05 1.4E-09 56.9 4.7 109 2-154 45-156 (205)
233 TIGR01444 fkbM_fam methyltrans 97.6 0.00022 4.7E-09 50.3 6.6 46 2-58 1-46 (143)
234 PF04672 Methyltransf_19: S-ad 97.6 0.00018 3.9E-09 56.4 6.4 109 2-161 71-195 (267)
235 COG3897 Predicted methyltransf 97.5 0.00021 4.6E-09 53.5 5.6 102 1-160 81-183 (218)
236 PF13578 Methyltransf_24: Meth 97.5 1.3E-05 2.7E-10 54.1 -0.8 103 4-156 1-105 (106)
237 PF13679 Methyltransf_32: Meth 97.4 0.00028 6.1E-09 50.2 5.1 50 2-58 28-77 (141)
238 PF02636 Methyltransf_28: Puta 97.4 0.00088 1.9E-08 52.2 7.8 151 2-161 21-199 (252)
239 KOG2798|consensus 97.4 0.00037 7.9E-09 55.7 5.5 128 2-153 153-293 (369)
240 PF01269 Fibrillarin: Fibrilla 97.4 0.0017 3.6E-08 49.7 8.8 100 1-155 75-177 (229)
241 COG2226 UbiE Methylase involve 97.4 0.00016 3.4E-09 56.0 3.0 31 68-98 104-134 (238)
242 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00033 7.2E-09 54.8 4.7 133 2-159 59-202 (256)
243 COG0116 Predicted N6-adenine-s 97.3 0.00065 1.4E-08 55.8 6.4 84 2-90 194-306 (381)
244 COG4076 Predicted RNA methylas 97.3 0.00072 1.6E-08 50.5 5.9 96 2-153 35-132 (252)
245 COG1565 Uncharacterized conser 97.3 0.0013 2.9E-08 53.5 7.7 153 2-163 80-248 (370)
246 PF06962 rRNA_methylase: Putat 97.2 0.00062 1.3E-08 48.5 4.8 84 36-157 1-93 (140)
247 KOG3115|consensus 97.2 0.00092 2E-08 50.5 5.8 46 3-59 64-109 (249)
248 PRK11760 putative 23S rRNA C24 97.2 0.00092 2E-08 54.3 6.0 31 1-44 213-243 (357)
249 KOG2187|consensus 97.2 0.00039 8.5E-09 58.8 3.6 58 2-77 386-443 (534)
250 KOG2730|consensus 97.1 0.00023 5E-09 54.2 1.7 75 2-93 97-175 (263)
251 PF04816 DUF633: Family of unk 97.1 0.0023 4.9E-08 48.6 6.9 46 3-59 1-46 (205)
252 KOG1540|consensus 97.1 0.0007 1.5E-08 52.8 3.9 31 68-98 162-192 (296)
253 COG4798 Predicted methyltransf 97.1 0.0045 9.8E-08 46.5 8.0 28 134-161 144-171 (238)
254 PF00398 RrnaAD: Ribosomal RNA 97.0 0.002 4.4E-08 50.5 6.5 61 1-81 32-92 (262)
255 PLN02668 indole-3-acetate carb 97.0 0.0041 8.9E-08 51.5 8.4 29 133-161 214-242 (386)
256 COG4627 Uncharacterized protei 97.0 0.00069 1.5E-08 49.0 3.2 54 103-156 31-86 (185)
257 COG4262 Predicted spermidine s 97.0 0.0036 7.8E-08 51.3 7.3 109 2-155 292-406 (508)
258 COG5459 Predicted rRNA methyla 96.9 0.0022 4.8E-08 52.2 5.4 111 2-160 116-229 (484)
259 PF06859 Bin3: Bicoid-interact 96.8 0.00025 5.3E-09 48.3 -0.4 36 119-154 1-42 (110)
260 PF03141 Methyltransf_29: Puta 96.7 0.0015 3.2E-08 55.3 3.6 46 112-157 420-468 (506)
261 COG0293 FtsJ 23S rRNA methylas 96.7 0.024 5.3E-07 42.9 9.6 34 1-44 47-80 (205)
262 PF05971 Methyltransf_10: Prot 96.6 0.0081 1.8E-07 48.1 6.8 82 2-97 105-191 (299)
263 KOG2198|consensus 96.5 0.029 6.4E-07 45.9 9.4 47 1-54 157-203 (375)
264 PF03492 Methyltransf_7: SAM d 96.4 0.005 1.1E-07 50.1 4.4 162 1-162 18-189 (334)
265 COG1189 Predicted rRNA methyla 96.4 0.0042 9.1E-08 47.9 3.6 93 2-155 82-177 (245)
266 KOG1709|consensus 96.3 0.014 3E-07 44.6 6.1 100 2-155 104-205 (271)
267 PRK11524 putative methyltransf 96.1 0.014 3.1E-07 46.3 5.5 42 2-56 211-252 (284)
268 COG1889 NOP1 Fibrillarin-like 96.0 0.064 1.4E-06 40.7 8.2 43 2-55 79-121 (231)
269 PF07091 FmrO: Ribosomal RNA m 96.0 0.015 3.3E-07 45.2 5.1 47 2-59 108-154 (251)
270 KOG3201|consensus 96.0 0.0046 1E-07 45.2 2.0 106 2-155 32-139 (201)
271 cd00315 Cyt_C5_DNA_methylase C 95.8 0.029 6.3E-07 44.4 6.0 74 1-97 1-76 (275)
272 COG1064 AdhP Zn-dependent alco 95.7 0.023 4.9E-07 46.3 5.2 89 4-158 173-261 (339)
273 PRK13699 putative methylase; P 95.5 0.036 7.8E-07 42.7 5.6 43 2-57 166-208 (227)
274 PF01861 DUF43: Protein of unk 95.5 0.072 1.6E-06 41.3 7.1 88 34-164 67-156 (243)
275 KOG4589|consensus 95.5 0.18 3.9E-06 37.9 8.9 32 1-42 71-102 (232)
276 PF02005 TRM: N2,N2-dimethylgu 95.5 0.033 7.2E-07 46.1 5.7 102 2-156 52-154 (377)
277 KOG2793|consensus 95.2 0.12 2.7E-06 40.3 7.5 36 120-155 163-198 (248)
278 PF11312 DUF3115: Protein of u 95.1 0.36 7.8E-06 38.9 10.1 132 2-157 89-243 (315)
279 PRK10742 putative methyltransf 95.0 0.087 1.9E-06 41.1 6.3 62 2-76 91-156 (250)
280 KOG0822|consensus 95.0 0.13 2.8E-06 44.2 7.6 105 2-154 370-476 (649)
281 PF04989 CmcI: Cephalosporin h 95.0 0.038 8.2E-07 41.9 4.1 105 2-156 35-147 (206)
282 COG0286 HsdM Type I restrictio 94.9 0.33 7.1E-06 41.6 10.1 82 2-94 189-275 (489)
283 PF01209 Ubie_methyltran: ubiE 94.9 0.0072 1.6E-07 46.7 0.0 31 68-98 101-131 (233)
284 COG0270 Dcm Site-specific DNA 94.5 0.17 3.7E-06 41.0 7.1 126 1-151 4-140 (328)
285 KOG1501|consensus 94.5 0.18 3.9E-06 42.6 7.1 46 2-59 69-114 (636)
286 COG2384 Predicted SAM-dependen 94.4 0.24 5.3E-06 37.9 7.3 47 2-59 19-65 (226)
287 PF11599 AviRa: RRNA methyltra 93.8 0.099 2.1E-06 40.0 4.1 45 2-55 54-98 (246)
288 KOG2539|consensus 93.3 0.1 2.2E-06 44.1 3.7 107 3-159 204-318 (491)
289 KOG2920|consensus 93.2 0.11 2.4E-06 41.2 3.5 36 1-48 118-153 (282)
290 KOG1562|consensus 92.9 0.23 4.9E-06 39.8 4.9 107 2-156 124-236 (337)
291 KOG1227|consensus 92.8 0.051 1.1E-06 43.5 1.2 45 2-57 197-241 (351)
292 KOG4058|consensus 92.7 0.45 9.8E-06 34.5 5.8 46 2-59 75-120 (199)
293 PF07757 AdoMet_MTase: Predict 92.7 0.092 2E-06 35.7 2.1 28 2-42 61-88 (112)
294 PHA01634 hypothetical protein 92.4 0.35 7.6E-06 34.1 4.8 43 2-56 31-73 (156)
295 COG1867 TRM1 N2,N2-dimethylgua 92.1 0.53 1.2E-05 38.8 6.3 45 2-57 55-99 (380)
296 COG4301 Uncharacterized conser 91.6 0.87 1.9E-05 35.8 6.6 47 2-55 81-127 (321)
297 cd08283 FDH_like_1 Glutathione 91.4 0.87 1.9E-05 37.4 7.0 40 2-53 187-228 (386)
298 KOG1099|consensus 91.3 0.86 1.9E-05 35.4 6.2 41 2-44 44-84 (294)
299 COG1063 Tdh Threonine dehydrog 91.3 0.29 6.3E-06 40.0 4.0 42 2-54 171-213 (350)
300 KOG2651|consensus 91.2 0.34 7.4E-06 40.2 4.2 40 2-53 156-195 (476)
301 PF00107 ADH_zinc_N: Zinc-bind 91.1 0.33 7.2E-06 33.2 3.7 32 9-52 1-32 (130)
302 KOG1253|consensus 91.1 0.14 3.1E-06 43.5 2.0 102 1-156 111-216 (525)
303 KOG2671|consensus 91.0 0.57 1.2E-05 38.4 5.3 76 2-93 211-294 (421)
304 PF00145 DNA_methylase: C-5 cy 90.9 0.35 7.6E-06 38.3 4.1 74 1-99 1-77 (335)
305 PF05711 TylF: Macrocin-O-meth 90.8 0.31 6.7E-06 38.1 3.5 57 101-159 157-215 (248)
306 PF03269 DUF268: Caenorhabditi 90.6 0.29 6.3E-06 35.8 3.0 41 116-156 60-111 (177)
307 PF04445 SAM_MT: Putative SAM- 90.4 0.53 1.2E-05 36.5 4.5 71 2-85 78-153 (234)
308 COG3129 Predicted SAM-dependen 90.0 0.38 8.2E-06 37.4 3.4 80 2-95 81-165 (292)
309 cd08254 hydroxyacyl_CoA_DH 6-h 88.7 2.3 5E-05 33.6 7.2 39 2-52 168-207 (338)
310 KOG0024|consensus 88.3 4.1 8.8E-05 33.3 8.2 40 2-52 172-212 (354)
311 PRK09880 L-idonate 5-dehydroge 88.1 0.69 1.5E-05 37.3 3.9 21 137-157 247-267 (343)
312 KOG1596|consensus 87.4 2 4.3E-05 33.7 5.7 35 2-46 159-193 (317)
313 PTZ00357 methyltransferase; Pr 87.3 3.1 6.8E-05 37.5 7.5 46 2-54 703-748 (1072)
314 TIGR00675 dcm DNA-methyltransf 85.2 1.9 4.1E-05 34.8 4.9 71 3-97 1-73 (315)
315 PRK01747 mnmC bifunctional tRN 85.0 2.3 4.9E-05 37.8 5.7 43 2-44 60-103 (662)
316 PRK09424 pntA NAD(P) transhydr 84.8 5.7 0.00012 34.4 7.9 39 2-52 167-206 (509)
317 PF11899 DUF3419: Protein of u 84.0 0.89 1.9E-05 37.8 2.6 61 101-161 275-339 (380)
318 PLN02232 ubiquinone biosynthes 83.1 0.76 1.6E-05 33.2 1.6 33 66-98 27-59 (160)
319 cd05188 MDR Medium chain reduc 82.7 2.8 6.1E-05 31.7 4.8 38 2-51 137-175 (271)
320 cd08230 glucose_DH Glucose deh 82.5 2.9 6.2E-05 33.8 5.0 22 137-158 250-271 (355)
321 COG0686 Ald Alanine dehydrogen 82.4 1.4 3.1E-05 35.7 3.1 94 3-153 171-265 (371)
322 PF05050 Methyltransf_21: Meth 82.0 3.1 6.6E-05 29.3 4.5 39 5-53 1-42 (167)
323 cd08232 idonate-5-DH L-idonate 81.5 3.5 7.7E-05 32.8 5.2 20 137-156 243-262 (339)
324 COG0863 DNA modification methy 80.1 4.9 0.00011 31.5 5.4 45 1-58 224-268 (302)
325 PRK10458 DNA cytosine methylas 80.0 3.2 6.9E-05 35.5 4.5 42 1-54 89-130 (467)
326 PF10354 DUF2431: Domain of un 80.0 10 0.00023 27.6 6.7 42 116-157 72-126 (166)
327 KOG2782|consensus 79.2 3 6.5E-05 32.3 3.7 80 3-98 47-133 (303)
328 TIGR00497 hsdM type I restrict 78.4 32 0.00069 29.6 10.2 48 2-56 220-267 (501)
329 PF05206 TRM13: Methyltransfer 77.4 3.1 6.6E-05 32.8 3.4 37 2-44 21-57 (259)
330 KOG2352|consensus 77.0 3.9 8.4E-05 35.0 4.1 45 2-57 298-342 (482)
331 TIGR02822 adh_fam_2 zinc-bindi 76.1 19 0.00042 28.8 7.9 21 137-157 235-255 (329)
332 TIGR00027 mthyl_TIGR00027 meth 75.9 24 0.00053 27.6 8.2 35 120-154 159-195 (260)
333 KOG0023|consensus 74.5 4.9 0.00011 32.8 3.9 35 8-54 191-225 (360)
334 cd05565 PTS_IIB_lactose PTS_II 74.4 5.2 0.00011 26.7 3.5 20 2-22 2-21 (99)
335 TIGR00561 pntA NAD(P) transhyd 73.5 6.9 0.00015 33.9 4.8 37 118-154 246-282 (511)
336 PF01555 N6_N4_Mtase: DNA meth 72.9 2 4.4E-05 31.9 1.4 24 132-155 32-55 (231)
337 COG5379 BtaA S-adenosylmethion 71.7 10 0.00022 30.8 5.0 56 1-69 65-120 (414)
338 KOG0821|consensus 71.6 7.3 0.00016 30.3 4.1 42 2-55 53-94 (326)
339 PF02254 TrkA_N: TrkA-N domain 71.0 6.2 0.00014 26.2 3.4 37 8-53 4-40 (116)
340 cd08245 CAD Cinnamyl alcohol d 70.2 22 0.00047 28.1 6.8 38 2-51 165-203 (330)
341 PLN02233 ubiquinone biosynthes 69.9 3.5 7.5E-05 32.2 2.1 33 66-98 128-160 (261)
342 PRK13699 putative methylase; P 69.6 5.3 0.00011 30.7 3.0 65 68-154 3-70 (227)
343 TIGR00518 alaDH alanine dehydr 68.4 4.3 9.3E-05 33.6 2.4 39 2-51 169-207 (370)
344 KOG3924|consensus 68.2 5.5 0.00012 33.3 3.0 25 132-156 284-308 (419)
345 cd08255 2-desacetyl-2-hydroxye 67.4 23 0.0005 27.1 6.3 20 137-156 171-190 (277)
346 cd08281 liver_ADH_like1 Zinc-d 67.2 21 0.00045 29.0 6.3 21 137-157 271-291 (371)
347 PF02086 MethyltransfD12: D12 67.0 7.1 0.00015 29.9 3.3 42 2-56 23-64 (260)
348 cd08234 threonine_DH_like L-th 66.9 23 0.0005 27.9 6.4 21 137-157 238-258 (334)
349 TIGR03451 mycoS_dep_FDH mycoth 66.9 26 0.00056 28.3 6.7 21 137-157 257-277 (358)
350 PF12692 Methyltransf_17: S-ad 66.5 9 0.00019 27.7 3.4 32 2-44 31-62 (160)
351 PF03514 GRAS: GRAS domain fam 65.9 58 0.0013 27.0 8.6 52 2-57 113-168 (374)
352 PRK05785 hypothetical protein; 65.1 4 8.7E-05 31.2 1.6 26 73-98 100-125 (226)
353 PRK08265 short chain dehydroge 64.7 42 0.0009 25.6 7.3 38 5-51 10-47 (261)
354 PRK11524 putative methyltransf 64.6 7.9 0.00017 30.6 3.2 68 68-155 10-79 (284)
355 KOG2360|consensus 64.0 23 0.00051 29.6 5.8 61 2-77 216-276 (413)
356 COG2933 Predicted SAM-dependen 64.0 18 0.00038 29.0 4.9 31 1-44 213-243 (358)
357 cd08237 ribitol-5-phosphate_DH 63.4 33 0.00071 27.6 6.7 23 136-158 236-258 (341)
358 TIGR01202 bchC 2-desacetyl-2-h 62.9 19 0.00041 28.5 5.1 22 137-158 212-233 (308)
359 COG1568 Predicted methyltransf 62.9 20 0.00043 28.9 5.0 80 34-155 175-259 (354)
360 PRK05599 hypothetical protein; 62.8 48 0.001 25.1 7.2 44 1-55 1-44 (246)
361 PLN03154 putative allyl alcoho 62.7 34 0.00073 27.6 6.7 38 2-51 161-200 (348)
362 TIGR00853 pts-lac PTS system, 62.2 14 0.00029 24.4 3.5 19 2-21 5-23 (95)
363 cd08261 Zn_ADH7 Alcohol dehydr 62.2 37 0.00081 26.9 6.8 20 137-156 239-258 (337)
364 cd05278 FDH_like Formaldehyde 62.0 35 0.00076 27.0 6.6 20 137-156 248-267 (347)
365 KOG2078|consensus 61.7 5.5 0.00012 33.7 1.9 43 3-58 253-295 (495)
366 PF07279 DUF1442: Protein of u 61.1 37 0.0008 26.1 6.0 59 2-73 44-104 (218)
367 COG5379 BtaA S-adenosylmethion 60.9 8.4 0.00018 31.2 2.7 116 45-160 250-370 (414)
368 cd08293 PTGR2 Prostaglandin re 60.8 28 0.00061 27.6 5.9 39 2-52 157-198 (345)
369 cd05285 sorbitol_DH Sorbitol d 60.0 49 0.0011 26.3 7.1 19 138-156 247-265 (343)
370 PRK05650 short chain dehydroge 59.7 55 0.0012 25.0 7.2 45 1-55 1-45 (270)
371 PRK05786 fabG 3-ketoacyl-(acyl 59.5 67 0.0015 23.8 7.5 43 2-54 7-49 (238)
372 COG1748 LYS9 Saccharopine dehy 58.7 31 0.00067 28.9 5.7 43 1-53 2-44 (389)
373 PF02719 Polysacc_synt_2: Poly 58.0 12 0.00025 30.1 3.1 42 6-55 3-44 (293)
374 COG1486 CelF Alpha-galactosida 56.9 1.3E+02 0.0027 25.8 9.7 52 2-58 5-60 (442)
375 PRK12826 3-ketoacyl-(acyl-carr 56.1 69 0.0015 23.8 7.1 43 2-54 8-50 (251)
376 PRK07890 short chain dehydroge 55.9 72 0.0016 24.0 7.2 43 2-54 7-49 (258)
377 cd05564 PTS_IIB_chitobiose_lic 55.4 21 0.00046 23.3 3.6 16 6-21 4-19 (96)
378 cd08294 leukotriene_B4_DH_like 54.9 38 0.00083 26.5 5.7 20 137-156 222-241 (329)
379 PRK06194 hypothetical protein; 54.8 67 0.0015 24.7 7.0 43 2-54 8-50 (287)
380 PRK05708 2-dehydropantoate 2-r 54.2 59 0.0013 25.9 6.6 35 118-155 69-103 (305)
381 COG3510 CmcI Cephalosporin hyd 54.2 35 0.00076 26.0 4.8 39 2-47 72-110 (237)
382 cd08239 THR_DH_like L-threonin 54.0 41 0.00089 26.7 5.7 21 137-157 243-263 (339)
383 PRK07102 short chain dehydroge 53.7 82 0.0018 23.5 7.1 42 2-53 3-44 (243)
384 PRK07806 short chain dehydroge 53.5 78 0.0017 23.6 7.0 33 2-44 8-40 (248)
385 PF02153 PDH: Prephenate dehyd 53.4 21 0.00045 27.8 3.8 20 33-52 10-29 (258)
386 PRK07454 short chain dehydroge 53.1 89 0.0019 23.3 7.2 41 5-54 10-50 (241)
387 PRK08340 glucose-1-dehydrogena 52.9 72 0.0016 24.2 6.8 45 1-55 1-45 (259)
388 PRK12939 short chain dehydroge 52.4 87 0.0019 23.3 7.1 44 2-55 9-52 (250)
389 KOG1098|consensus 51.9 14 0.0003 33.0 2.7 33 2-44 47-79 (780)
390 PRK08324 short chain dehydroge 51.8 75 0.0016 28.4 7.5 40 6-54 427-466 (681)
391 cd08236 sugar_DH NAD(P)-depend 51.6 82 0.0018 24.9 7.1 21 136-156 238-258 (343)
392 KOG2811|consensus 51.6 24 0.00052 29.4 3.9 59 3-78 186-247 (420)
393 PRK10669 putative cation:proto 50.9 23 0.00049 30.8 4.0 36 8-52 423-458 (558)
394 PF11899 DUF3419: Protein of u 50.9 41 0.00088 28.1 5.3 42 2-56 38-79 (380)
395 PRK06522 2-dehydropantoate 2-r 50.3 79 0.0017 24.7 6.7 40 1-51 1-40 (304)
396 cd08285 NADP_ADH NADP(H)-depen 50.2 77 0.0017 25.3 6.8 21 137-157 247-267 (351)
397 PRK03659 glutathione-regulated 49.4 25 0.00054 31.1 4.0 36 8-52 406-441 (601)
398 PRK06949 short chain dehydroge 48.9 1E+02 0.0022 23.1 7.0 42 3-54 12-53 (258)
399 PRK08655 prephenate dehydrogen 48.5 66 0.0014 27.2 6.3 37 1-47 1-37 (437)
400 PF02558 ApbA: Ketopantoate re 48.2 26 0.00056 24.4 3.3 36 117-155 65-100 (151)
401 PRK08339 short chain dehydroge 47.8 1.1E+02 0.0024 23.4 7.1 41 6-55 13-53 (263)
402 PRK08213 gluconate 5-dehydroge 47.1 1.1E+02 0.0025 23.0 7.0 40 7-55 18-57 (259)
403 COG0604 Qor NADPH:quinone redu 47.0 19 0.00041 29.1 2.8 33 119-158 211-243 (326)
404 PLN02586 probable cinnamyl alc 46.2 27 0.00058 28.4 3.6 21 137-157 259-279 (360)
405 PF03686 UPF0146: Uncharacteri 46.1 34 0.00074 24.0 3.5 32 2-45 16-47 (127)
406 KOG1269|consensus 45.9 36 0.00079 28.2 4.2 134 2-161 183-318 (364)
407 PRK12429 3-hydroxybutyrate deh 45.8 97 0.0021 23.2 6.4 41 6-55 9-49 (258)
408 PRK08703 short chain dehydroge 45.5 1E+02 0.0022 23.0 6.5 43 2-54 8-50 (239)
409 PRK05653 fabG 3-ketoacyl-(acyl 45.5 1.2E+02 0.0026 22.3 6.9 43 2-54 7-49 (246)
410 TIGR03366 HpnZ_proposed putati 45.5 19 0.00041 28.0 2.5 22 136-157 198-219 (280)
411 PRK09496 trkA potassium transp 45.3 48 0.001 27.7 5.0 41 1-52 1-41 (453)
412 PRK07814 short chain dehydroge 44.7 1E+02 0.0022 23.4 6.5 42 3-54 13-54 (263)
413 PF07101 DUF1363: Protein of u 42.7 10 0.00022 25.3 0.4 18 4-21 7-24 (124)
414 PF02737 3HCDH_N: 3-hydroxyacy 42.4 65 0.0014 23.6 4.8 24 33-56 21-44 (180)
415 PLN02514 cinnamyl-alcohol dehy 41.9 55 0.0012 26.5 4.7 21 137-157 256-276 (357)
416 PRK07502 cyclohexadienyl dehyd 41.7 79 0.0017 25.1 5.5 39 2-51 8-48 (307)
417 PRK07904 short chain dehydroge 41.2 1.3E+02 0.0028 22.9 6.6 43 2-54 10-54 (253)
418 cd05281 TDH Threonine dehydrog 41.2 1.4E+02 0.0031 23.6 7.1 20 137-156 243-262 (341)
419 PF10609 ParA: ParA/MinD ATPas 41.2 84 0.0018 20.2 4.5 46 2-57 4-49 (81)
420 TIGR02441 fa_ox_alpha_mit fatt 41.1 89 0.0019 28.5 6.3 44 2-56 337-380 (737)
421 PLN02244 tocopherol O-methyltr 41.1 22 0.00047 28.9 2.3 31 68-98 171-201 (340)
422 PRK03562 glutathione-regulated 40.6 39 0.00084 30.0 3.9 36 8-52 406-441 (621)
423 PRK06125 short chain dehydroge 40.4 1.6E+02 0.0035 22.2 7.1 43 3-55 10-52 (259)
424 KOG0919|consensus 40.1 28 0.00061 27.5 2.6 78 1-99 4-85 (338)
425 PRK09496 trkA potassium transp 40.0 46 0.00099 27.8 4.1 37 8-53 237-273 (453)
426 COG0541 Ffh Signal recognition 39.8 99 0.0021 26.4 5.9 42 116-157 179-222 (451)
427 PRK06124 gluconate 5-dehydroge 39.1 1.6E+02 0.0036 22.0 7.2 44 2-55 13-56 (256)
428 PRK07417 arogenate dehydrogena 38.5 67 0.0014 25.2 4.6 41 1-52 1-41 (279)
429 PRK06172 short chain dehydroge 38.3 1.4E+02 0.0031 22.3 6.4 44 2-55 9-52 (253)
430 cd08278 benzyl_alcohol_DH Benz 38.3 1.3E+02 0.0029 24.2 6.5 20 137-156 266-285 (365)
431 PRK05866 short chain dehydroge 38.2 1.4E+02 0.003 23.4 6.4 42 3-54 43-84 (293)
432 KOG1209|consensus 38.2 66 0.0014 25.1 4.2 39 2-49 9-47 (289)
433 TIGR02437 FadB fatty oxidation 38.1 80 0.0017 28.6 5.5 44 2-56 315-358 (714)
434 PRK12921 2-dehydropantoate 2-r 38.0 1.9E+02 0.0042 22.5 7.7 39 1-51 1-39 (305)
435 PRK08267 short chain dehydroge 37.9 1.6E+02 0.0035 22.1 6.6 39 6-53 6-44 (260)
436 cd01842 SGNH_hydrolase_like_5 37.5 31 0.00066 25.8 2.3 45 115-159 46-102 (183)
437 TIGR03206 benzo_BadH 2-hydroxy 37.2 1.6E+02 0.0034 21.9 6.4 42 3-54 6-47 (250)
438 PRK08643 acetoin reductase; Va 37.2 1.8E+02 0.0038 21.8 7.2 41 6-55 7-47 (256)
439 PRK07666 fabG 3-ketoacyl-(acyl 37.1 1.6E+02 0.0034 21.8 6.4 43 2-54 9-51 (239)
440 PRK07231 fabG 3-ketoacyl-(acyl 37.1 1.5E+02 0.0032 22.0 6.2 40 6-54 10-49 (251)
441 PRK06484 short chain dehydroge 37.0 1.9E+02 0.0041 24.6 7.4 39 6-53 274-312 (520)
442 cd01075 NAD_bind_Leu_Phe_Val_D 36.6 93 0.002 23.2 4.9 41 2-53 30-70 (200)
443 PRK10309 galactitol-1-phosphat 36.5 38 0.00083 27.0 3.0 22 136-157 240-261 (347)
444 TIGR00692 tdh L-threonine 3-de 36.2 2.1E+02 0.0045 22.7 7.2 21 137-157 242-262 (340)
445 PRK09072 short chain dehydroge 36.2 1.6E+02 0.0034 22.3 6.3 40 6-54 10-49 (263)
446 PRK06482 short chain dehydroge 36.2 1.6E+02 0.0034 22.5 6.4 40 2-51 4-43 (276)
447 PRK07677 short chain dehydroge 36.1 1.9E+02 0.004 21.7 7.1 43 2-54 3-45 (252)
448 PRK05876 short chain dehydroge 35.7 2E+02 0.0044 22.1 7.1 41 6-55 11-51 (275)
449 PRK13394 3-hydroxybutyrate deh 35.6 1.9E+02 0.0041 21.6 7.1 41 6-55 12-52 (262)
450 PRK05854 short chain dehydroge 35.5 2.2E+02 0.0048 22.5 7.3 41 6-55 19-59 (313)
451 PRK09548 PTS system ascorbate- 35.4 82 0.0018 28.0 4.9 17 2-19 508-524 (602)
452 PRK06113 7-alpha-hydroxysteroi 35.3 1.9E+02 0.0042 21.7 7.0 43 2-54 13-55 (255)
453 COG0287 TyrA Prephenate dehydr 35.2 69 0.0015 25.5 4.2 41 2-51 5-45 (279)
454 cd08231 MDR_TM0436_like Hypoth 35.1 1.3E+02 0.0028 24.1 5.9 20 137-156 261-280 (361)
455 PRK07326 short chain dehydroge 35.1 1.2E+02 0.0027 22.3 5.5 43 2-54 8-50 (237)
456 PRK06181 short chain dehydroge 35.0 2E+02 0.0043 21.7 7.2 43 2-54 3-45 (263)
457 cd08263 Zn_ADH10 Alcohol dehyd 34.9 1.9E+02 0.0042 23.2 6.9 19 138-156 269-287 (367)
458 PRK06035 3-hydroxyacyl-CoA deh 34.9 77 0.0017 24.9 4.5 43 2-55 5-47 (291)
459 PRK05396 tdh L-threonine 3-deh 34.7 2E+02 0.0043 22.8 6.9 22 136-157 243-264 (341)
460 PF12242 Eno-Rase_NADH_b: NAD( 34.5 72 0.0016 20.3 3.3 31 2-42 41-72 (78)
461 PRK06914 short chain dehydroge 34.4 1.9E+02 0.0042 22.0 6.6 40 6-54 8-47 (280)
462 TIGR01963 PHB_DH 3-hydroxybuty 34.4 1.9E+02 0.0042 21.4 7.1 40 6-54 6-45 (255)
463 PRK07523 gluconate 5-dehydroge 34.3 2E+02 0.0043 21.6 6.9 44 2-55 12-55 (255)
464 PRK07774 short chain dehydroge 33.8 1.9E+02 0.0041 21.5 6.4 40 6-54 11-50 (250)
465 PRK11154 fadJ multifunctional 33.7 1.3E+02 0.0028 27.2 6.1 44 2-56 311-355 (708)
466 PRK07478 short chain dehydroge 33.7 2E+02 0.0044 21.5 7.1 41 6-55 11-51 (254)
467 COG0300 DltE Short-chain dehyd 33.6 1.9E+02 0.0042 22.8 6.4 44 6-58 11-54 (265)
468 cd05298 GH4_GlvA_pagL_like Gly 33.3 1.2E+02 0.0025 25.9 5.5 51 1-56 1-51 (437)
469 PRK07832 short chain dehydroge 33.2 1.7E+02 0.0038 22.2 6.2 43 2-54 2-44 (272)
470 PRK05808 3-hydroxybutyryl-CoA 33.1 86 0.0019 24.5 4.4 42 3-55 6-47 (282)
471 PRK08217 fabG 3-ketoacyl-(acyl 33.0 2E+02 0.0043 21.3 6.4 44 2-55 7-50 (253)
472 TIGR00872 gnd_rel 6-phosphoglu 32.7 92 0.002 24.7 4.6 41 1-52 1-41 (298)
473 PF03721 UDPG_MGDP_dh_N: UDP-g 32.3 1.1E+02 0.0024 22.5 4.7 41 1-52 1-41 (185)
474 cd08233 butanediol_DH_like (2R 32.2 40 0.00086 27.0 2.5 21 137-157 253-273 (351)
475 PRK10538 malonic semialdehyde 32.1 2.2E+02 0.0047 21.3 6.7 41 1-51 1-41 (248)
476 TIGR03201 dearomat_had 6-hydro 32.0 84 0.0018 25.2 4.3 39 2-52 169-208 (349)
477 PRK02318 mannitol-1-phosphate 31.6 78 0.0017 26.2 4.1 43 1-53 1-43 (381)
478 PTZ00142 6-phosphogluconate de 31.3 97 0.0021 26.6 4.7 21 33-53 23-43 (470)
479 PLN02545 3-hydroxybutyryl-CoA 31.0 1E+02 0.0022 24.3 4.5 38 9-55 11-48 (295)
480 TIGR02415 23BDH acetoin reduct 30.7 2.3E+02 0.0049 21.1 6.4 42 3-54 3-44 (254)
481 cd08296 CAD_like Cinnamyl alco 30.7 58 0.0013 25.8 3.1 21 136-156 239-259 (333)
482 PRK08945 putative oxoacyl-(acy 30.7 2.3E+02 0.0049 21.1 6.6 43 3-55 15-57 (247)
483 PRK05867 short chain dehydroge 30.5 2.3E+02 0.0051 21.2 6.8 41 6-55 14-54 (253)
484 PRK07831 short chain dehydroge 30.3 2.4E+02 0.0052 21.3 7.2 44 3-55 20-63 (262)
485 PLN02427 UDP-apiose/xylose syn 30.3 1.3E+02 0.0028 24.5 5.2 35 1-45 15-50 (386)
486 cd08279 Zn_ADH_class_III Class 30.2 2.7E+02 0.0058 22.4 7.0 21 137-157 263-283 (363)
487 PRK09260 3-hydroxybutyryl-CoA 30.0 1.1E+02 0.0023 24.1 4.5 42 2-54 3-44 (288)
488 PRK07109 short chain dehydroge 30.0 2.9E+02 0.0063 22.1 7.2 41 6-55 13-53 (334)
489 COG3315 O-Methyltransferase in 29.8 2.2E+02 0.0047 22.9 6.3 36 121-156 172-209 (297)
490 PRK12490 6-phosphogluconate de 29.8 77 0.0017 25.1 3.7 40 1-51 1-40 (299)
491 COG1086 Predicted nucleoside-d 29.7 2.1E+02 0.0045 25.5 6.4 46 4-57 253-298 (588)
492 PLN00203 glutamyl-tRNA reducta 29.4 1.6E+02 0.0035 25.7 5.7 40 2-52 268-308 (519)
493 PRK07063 short chain dehydroge 29.2 2.5E+02 0.0054 21.1 7.1 43 3-55 10-52 (260)
494 cd08266 Zn_ADH_like1 Alcohol d 29.2 66 0.0014 25.0 3.2 19 138-156 247-265 (342)
495 PRK06940 short chain dehydroge 28.8 2.7E+02 0.0059 21.4 7.1 34 11-54 11-44 (275)
496 PRK09599 6-phosphogluconate de 28.6 1.2E+02 0.0027 23.9 4.7 40 1-51 1-40 (301)
497 PRK07067 sorbitol dehydrogenas 28.4 2.1E+02 0.0045 21.5 5.8 38 6-52 11-48 (257)
498 PRK07453 protochlorophyllide o 28.4 3E+02 0.0064 21.7 6.9 40 6-54 11-50 (322)
499 PLN02178 cinnamyl-alcohol dehy 28.3 95 0.0021 25.4 4.1 21 137-157 254-274 (375)
500 PRK10675 UDP-galactose-4-epime 28.2 2E+02 0.0044 22.6 5.9 32 1-42 1-32 (338)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.91 E-value=1.8e-24 Score=166.03 Aligned_cols=113 Identities=42% Similarity=0.637 Sum_probs=104.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||||.++..+++..+ .++++++|+|+.|++.++++....+.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-----------~g~v~~~D~s~~ML~~a~~k~~~~~~--------------------- 100 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-----------TGEVVGLDISESMLEVAREKLKKKGV--------------------- 100 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-----------CceEEEEECCHHHHHHHHHHhhccCc---------------------
Confidence 5799999999999999999874 68999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..+.|+.+|++++|+++.+||+|.++++++++++++++|+|++|+|||||++++.+++.|
T Consensus 101 --------------------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 101 --------------------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred --------------------cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 348889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccC
Q psy889 161 NNSML 165 (167)
Q Consensus 161 ~~~~~ 165 (167)
.++++
T Consensus 161 ~~~~~ 165 (238)
T COG2226 161 DNPVL 165 (238)
T ss_pred Cchhh
Confidence 88765
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.89 E-value=1.5e-23 Score=161.56 Aligned_cols=115 Identities=35% Similarity=0.549 Sum_probs=92.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++++|+|+.|++.++++....+.
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~----------~~~~v~~vD~s~~ML~~a~~k~~~~~~--------------------- 97 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVG----------PNGKVVGVDISPGMLEVARKKLKREGL--------------------- 97 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS-------------EEEEEES-HHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEeCCChHHHHHHHHHHCC----------CccEEEEecCCHHHHHHHHHHHHhhCC---------------------
Confidence 3799999999999999998764 367999999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.++++|.+++|+++++||.|+|+++++++++..+++++++|+|||||.++++|++.|
T Consensus 98 --------------------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 98 --------------------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp ---------------------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred --------------------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCC
Q psy889 161 NNSMLQ 166 (167)
Q Consensus 161 ~~~~~~ 166 (167)
.+++++
T Consensus 158 ~~~~~~ 163 (233)
T PF01209_consen 158 RNPLLR 163 (233)
T ss_dssp SSHHHH
T ss_pred CCchhh
Confidence 987653
No 3
>KOG1540|consensus
Probab=99.89 E-value=6.9e-23 Score=156.31 Aligned_cols=124 Identities=55% Similarity=0.815 Sum_probs=96.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|++||+|||||.+++.++++...- ...+..+++++|+|++|+..++++....+. -+.
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~-----~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~---------------- 158 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQ-----FGDRESKVTVLDINPHMLAVGKQRAKKRPL--KAS---------------- 158 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccc-----cCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcC----------------
Confidence 799999999999999999998511 012468999999999999999999865443 111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.++++|++++|+++.+||.+++.+.+.++++++++++++||+|||||+|++.+|++.
T Consensus 159 --------------------~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 159 --------------------SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred --------------------CceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 234555555555666666666666666666688999999999999999999999999999
Q ss_pred CCccCCC
Q psy889 161 NNSMLQW 167 (167)
Q Consensus 161 ~~~~~~~ 167 (167)
+++.++|
T Consensus 219 ~~~~l~~ 225 (296)
T KOG1540|consen 219 ENEPLKW 225 (296)
T ss_pred ccHHHHH
Confidence 9887765
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.81 E-value=1.5e-19 Score=141.66 Aligned_cols=115 Identities=30% Similarity=0.435 Sum_probs=96.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... +..+++|+|+|+.|++.|+++.......
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~----------~~~~V~gvD~S~~ml~~A~~r~~~~~~~-------------------- 124 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVG----------SDGKVMGLDFSSEQLAVAASRQELKAKS-------------------- 124 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHhhhhhhc--------------------
Confidence 3799999999999999888653 2468999999999999999875421100
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
...++.+...|.+++++.+++||+|++..+++++++...++++++|+|||||++++.++..+
T Consensus 125 ------------------~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 125 ------------------CYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ------------------cCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 01467888899988998889999999999999999999999999999999999999999877
Q ss_pred CCc
Q psy889 161 NNS 163 (167)
Q Consensus 161 ~~~ 163 (167)
+.+
T Consensus 187 ~~~ 189 (261)
T PLN02233 187 TQP 189 (261)
T ss_pred CcH
Confidence 643
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.77 E-value=1e-18 Score=115.37 Aligned_cols=95 Identities=29% Similarity=0.428 Sum_probs=82.2
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
||+|||+|..+..++++ . +.+++++|+++.+++.++++....
T Consensus 1 LdiG~G~G~~~~~l~~~-~-----------~~~v~~~D~~~~~~~~~~~~~~~~-------------------------- 42 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-----------GASVTGIDISEEMLEQARKRLKNE-------------------------- 42 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-----------TCEEEEEES-HHHHHHHHHHTTTS--------------------------
T ss_pred CEecCcCCHHHHHHHhc-c-----------CCEEEEEeCCHHHHHHHHhccccc--------------------------
Confidence 89999999999999986 2 788999999999999999887532
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
++.+...+...+++++++||+|++..+++++++..+++++++|+|||||++++
T Consensus 43 ------------------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 43 ------------------GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------------TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------CchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 34588889999999999999999999999999999999999999999999986
No 6
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.75 E-value=5.6e-18 Score=122.30 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=92.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ++.+++|+|+|+.+++.|+++++..+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~----------~~~~i~gvD~s~~~i~~a~~~~~~~~~--------------------- 53 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELN----------PGAKIIGVDISEEMIEYAKKRAKELGL--------------------- 53 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHST----------TTSEEEEEESSHHHHHHHHHHHHHTTS---------------------
T ss_pred CEEEEecCcCcHHHHHHHHhcC----------CCCEEEEEECcHHHHHHhhcccccccc---------------------
Confidence 4899999999999999996442 478899999999999999999887776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|..+++ +. ..||+|++..+++++.+...+++++++.|++||.+++.+..
T Consensus 54 --------------------~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 54 --------------------DNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --------------------TTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------------------cccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 57888888888865 44 78999999999999999999999999999999999998876
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=8.2e-18 Score=136.33 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=95.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.+ +.+++|+|+|+.+++.++++....+.
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~------------g~~v~gvD~s~~~i~~a~~~~~~~g~--------------------- 166 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKY------------GANVKGITLSPVQAARANALAAAQGL--------------------- 166 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999998865 57899999999999999988765543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|..+.++.+++||+|++..+++++++...++++++++|||||.+++.++++.
T Consensus 167 -------------------~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~ 227 (340)
T PLN02244 167 -------------------SDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHR 227 (340)
T ss_pred -------------------CCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 1468888888888888889999999999999999999999999999999999999988754
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=1.8e-18 Score=131.68 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=92.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||.|.++..+++ .+..++|+|.++.+++.|+.+....+.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr-------------~Ga~VtgiD~se~~I~~Ak~ha~e~gv--------------------- 106 (243)
T COG2227 61 LRVLDVGCGGGILSEPLAR-------------LGASVTGIDASEKPIEVAKLHALESGV--------------------- 106 (243)
T ss_pred CeEEEecCCccHhhHHHHH-------------CCCeeEEecCChHHHHHHHHhhhhccc---------------------
Confidence 5899999999999999998 478999999999999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.+.|.+...+++....++||+|+|.-+++|+++++.+++.+.+++||||.+++++++..
T Consensus 107 ---------------------~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 107 ---------------------NIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ---------------------cccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 45677776666665558999999999999999999999999999999999999988754
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 166 ~ 166 (243)
T COG2227 166 L 166 (243)
T ss_pred H
Confidence 3
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=1.1e-17 Score=128.33 Aligned_cols=112 Identities=34% Similarity=0.493 Sum_probs=95.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... +..+++++|+++.+++.++++......
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 95 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVG----------PEGHVIGLDFSENMLSVGRQKVKDAGL--------------------- 95 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 4799999999999999998763 357899999999999999998865443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++.+++||+|++..+++++++...++++++++|+|||.+++.+.+.+
T Consensus 96 --------------------~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 96 --------------------HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred --------------------CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 457777777777777778899999998899999999999999999999999999887766
Q ss_pred CCc
Q psy889 161 NNS 163 (167)
Q Consensus 161 ~~~ 163 (167)
+.+
T Consensus 156 ~~~ 158 (231)
T TIGR02752 156 TIP 158 (231)
T ss_pred CCh
Confidence 543
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=2.2e-17 Score=112.77 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=83.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++......
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-----------~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------------- 50 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-----------PGARVVGVDISPEMLEIARERAAEEGL--------------------- 50 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-----------TTSEEEEEESSHHHHHHHHHHHHHTTT---------------------
T ss_pred CEEEEEcCcCCHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 389999999999999999966 488999999999999999999854433
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-ccccc---ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..........||+|++.. .++++ .+.+++++++++.|+|||++++.+
T Consensus 51 -------------------~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 51 -------------------SDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------TTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2578888888811222235599999988 44323 456889999999999999999865
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=2.5e-17 Score=132.26 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=90.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++ .+.+++|+|.++.+++.|+++......
T Consensus 134 ~ILDIGCG~G~~s~~La~-------------~g~~V~GID~s~~~i~~Ar~~~~~~~~---------------------- 178 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLAR-------------MGATVTGVDAVDKNVKIARLHADMDPV---------------------- 178 (322)
T ss_pred EEEEeeCCCCHHHHHHHH-------------cCCEEEEEeCCHHHHHHHHHHHHhcCc----------------------
Confidence 799999999999998876 367899999999999999987643221
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...+.++++..+++||+|++..+++|+++...++++++++|||||.+++.+++.
T Consensus 179 ------------------~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 179 ------------------TSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred ------------------ccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 135778888888777777889999999999999999999999999999999999987654
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=7.9e-17 Score=125.66 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=89.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++++|+|+.+++.|+++....+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~-------------~g~~v~~vD~s~~~l~~a~~~~~~~g~--------------------- 91 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAE-------------LGHQVILCDLSAEMIQRAKQAAEAKGV--------------------- 91 (255)
T ss_pred CEEEEeCCCchHHHHHHHH-------------cCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999999987 367899999999999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.++..+..++. ..+.+||+|++..+++++.+...++++++++|||||+++++.++.
T Consensus 92 -------------------~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 92 -------------------SDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred -------------------ccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 135677777766543 446789999999999999999999999999999999999876653
No 13
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.69 E-value=2.1e-16 Score=124.25 Aligned_cols=108 Identities=25% Similarity=0.243 Sum_probs=92.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++....+.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g----------~~~~v~gvD~s~~~l~~A~~~~~~~g~--------------------- 127 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVG----------PTGKVIGVDMTPEMLAKARANARKAGY--------------------- 127 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEECCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999998888777653 356899999999999999998776554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+.+.+++.+++||+|+++.++++.++...++++++++|||||++++.++..
T Consensus 128 --------------------~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 128 --------------------TNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred --------------------CCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 45777778888777777899999999999999999999999999999999999987653
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.68 E-value=2e-16 Score=124.14 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=88.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +.+++++|+|+.+++.++++... .
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~------------~~~v~giD~s~~~~~~a~~~~~~--~--------------------- 98 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY------------GAHVHGVDICEKMVNIAKLRNSD--K--------------------- 98 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc------------CCEEEEEECCHHHHHHHHHHcCc--C---------------------
Confidence 479999999999999887643 57899999999999999987642 1
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|....++++++||+|++..++++++ +...++++++++|||||++++.++.
T Consensus 99 --------------------~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 99 --------------------NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred --------------------CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 357777888877777788999999987776664 7889999999999999999999886
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 159 ~~~ 161 (263)
T PTZ00098 159 ADK 161 (263)
T ss_pred ccc
Confidence 544
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.68 E-value=3.7e-18 Score=114.57 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=65.2
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
||+|||+|.++..+++++ +..+++++|+|+.|++.+++++.....
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------~~~~~~~~D~s~~~l~~a~~~~~~~~~------------------------ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------PDARYTGVDISPSMLERARERLAELGN------------------------ 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------EEEEEEEESSSSTTSTTCCCHHHCT-------------------------
T ss_pred CEeCccChHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHhhhcCC------------------------
Confidence 799999999999999987 378999999999999999888876543
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEE
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 152 (167)
.+.........+.. ....+||+|++..+++++++++.++++++++|+|||.|
T Consensus 46 -----------------~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 46 -----------------DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------------EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -----------------cceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 22233333222221 11258999999999999999999999999999999986
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=1.7e-16 Score=123.76 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=82.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.++++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~-----------p~~~v~gvD~s~~~~~~a~~~--------------------------- 72 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRW-----------PGAVIEALDSSPEMVAAARER--------------------------- 72 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHhc---------------------------
Confidence 379999999999999998876 367899999999999998752
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++.+...|.+.++ .+++||+|+++.+++++++...++++++++|||||.+++....
T Consensus 73 ---------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 73 ---------------------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred ---------------------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2445566666553 3568999999999999999999999999999999999986543
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=1.1e-16 Score=124.31 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=85.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++. .+.+++++|+|+.+++.++++..
T Consensus 45 ~vLDiGcG~G~~~~~l~~-------------~~~~v~~~D~s~~~l~~a~~~~~-------------------------- 85 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRE-------------RGSQVTALDLSPPMLAQARQKDA-------------------------- 85 (251)
T ss_pred eEEEeeCCCCHHHHHHHH-------------cCCeEEEEECCHHHHHHHHhhCC--------------------------
Confidence 799999999999888865 36789999999999999987632
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
...+...|.+.+++.+.+||+|+++.+++|.++...++++++++|+|||.+++..+....
T Consensus 86 --------------------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 86 --------------------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred --------------------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 134566777777777788999999999999999999999999999999999998877543
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=3.7e-16 Score=117.65 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=82.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++ .+.+++++|+|+.+++.++++....+.
T Consensus 32 ~~vLDiGcG~G~~a~~La~-------------~g~~V~gvD~S~~~i~~a~~~~~~~~~--------------------- 77 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAA-------------NGFDVTAWDKNPMSIANLERIKAAENL--------------------- 77 (197)
T ss_pred CcEEEECCCCCHHHHHHHH-------------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999987 367899999999999999988766544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|....++ .+.||+|++..++++++ +...++++++++|+|||++++.++
T Consensus 78 --------------------~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 78 --------------------DNLHTAVVDLNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred --------------------CcceEEecChhhCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 345666667666555 35699999998887664 578999999999999999765443
No 19
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=1e-16 Score=123.19 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=84.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +.+++|+|+|++|++.++++.
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~------------~~~v~gvD~S~~Ml~~a~~~~--------------------------- 94 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVF------------KYYVVALDYAENMLKMNLVAD--------------------------- 94 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhc------------CCEEEEECCCHHHHHHHHhcc---------------------------
Confidence 79999999999999998754 468999999999999987531
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.+...+.+.+|+.+++||+|++..+++++++..+++++++|+||| .+.+++++.|+
T Consensus 95 ----------------------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp--~~~ile~~~p~ 150 (226)
T PRK05785 95 ----------------------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK--QVGFIAMGKPD 150 (226)
T ss_pred ----------------------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC--ceEEEEeCCCC
Confidence 124567777888889999999999999999999999999999999 34466888887
Q ss_pred CccC
Q psy889 162 NSML 165 (167)
Q Consensus 162 ~~~~ 165 (167)
+.+.
T Consensus 151 ~~~~ 154 (226)
T PRK05785 151 NVIK 154 (226)
T ss_pred cHHH
Confidence 6543
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=5.8e-16 Score=130.49 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=91.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +.+++|+|+|+.+++.|+++.....
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvDiS~~~l~~A~~~~~~~~---------------------- 313 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENF------------DVHVVGIDLSVNMISFALERAIGRK---------------------- 313 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHhhcCC----------------------
Confidence 379999999999999888755 5689999999999999987764221
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++++++||+|++..+++++++..+++++++++|||||.+++.++...
T Consensus 314 --------------------~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 314 --------------------CSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred --------------------CceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 357788888877777778899999999999999999999999999999999999987654
Q ss_pred C
Q psy889 161 N 161 (167)
Q Consensus 161 ~ 161 (167)
.
T Consensus 374 ~ 374 (475)
T PLN02336 374 P 374 (475)
T ss_pred C
Confidence 3
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=8.9e-16 Score=119.33 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=88.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+.. ++.+++++|+|+.|++.+++++...+.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~---------~~~~v~gvD~S~~ml~~A~~~~~~~~~--------------------- 107 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHH---------DNCKIIAIDNSPAMIERCRRHIDAYKA--------------------- 107 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCC---------CCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999988874311 368999999999999999999876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...+....+.. .+|+|+++.++++++. ...++++++++|||||.|++.+..
T Consensus 108 -------------------~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 108 -------------------PTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred -------------------CCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 13677888887776653 4899999988887754 568899999999999999998855
Q ss_pred ccCC
Q psy889 159 HVNN 162 (167)
Q Consensus 159 ~~~~ 162 (167)
..++
T Consensus 167 ~~~~ 170 (247)
T PRK15451 167 SFED 170 (247)
T ss_pred CCCc
Confidence 4443
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=1.8e-15 Score=115.51 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ..+++|+|+|+.+++.+++++...+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-----------~~~v~gid~s~~~~~~a~~~~~~~gl--------------------- 48 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-----------HLQLHGYTISPEQAEVGRERIRALGL--------------------- 48 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999999988762 57899999999999999998876544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|....+. .++||+|++..+++++++...+|++++++|+|||++++.++.
T Consensus 49 -------------------~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 49 -------------------QGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred -------------------CcceEEEecccccCCC-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 1456777777655444 357999999999999999999999999999999999998864
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.63 E-value=2.1e-15 Score=116.54 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=88.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+.. ++.+++|+|+|+.|++.|++++.....
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~---------p~~~v~gvD~s~~ml~~a~~~~~~~~~--------------------- 104 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQ---------PNVKIIGIDNSQPMVERCRQHIAAYHS--------------------- 104 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCC---------CCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999999886521 368899999999999999998865432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|....+.. .+|+|++..++++++ +...++++++++|+|||.+++.+..
T Consensus 105 -------------------~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 105 -------------------EIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred -------------------CCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 13567778888776653 489999988888875 4578999999999999999998865
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 164 ~~~ 166 (239)
T TIGR00740 164 RFE 166 (239)
T ss_pred cCC
Confidence 443
No 24
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.63 E-value=2.2e-15 Score=112.62 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=85.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++... +..+++++|+++.+++.++++.+..+.
T Consensus 47 ~~VLDiGcGtG~~al~la~~~-----------~~~~V~giD~s~~~l~~A~~~~~~~~l--------------------- 94 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR-----------PELKVTLVDSLGKKIAFLREVAAELGL--------------------- 94 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC-----------CCCeEEEEeCcHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999999998865 378999999999999999999887664
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+..+.+. ..+||+|++.. +.+...++++++++|+|||.+++.....
T Consensus 95 --------------------~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 95 --------------------KNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred --------------------CCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 347777887777655 66899999864 4567889999999999999999976543
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=2e-15 Score=113.53 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++ .+.+++++|+|+.+++.++++....+.
T Consensus 32 ~~vLDiGcG~G~~a~~la~-------------~g~~V~~iD~s~~~l~~a~~~~~~~~~--------------------- 77 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSL-------------AGYDVRAWDHNPASIASVLDMKARENL--------------------- 77 (195)
T ss_pred CcEEEeCCCCCHHHHHHHH-------------CCCeEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 3799999999999999987 367899999999999999987764432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++.+...+....+. +++||+|+++.++++++ +...++++++++|+|||++++.++.
T Consensus 78 ---------------------~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 78 ---------------------PLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred ---------------------CceeEeccchhccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 23444445443333 35799999988888763 5678999999999999997766543
No 26
>KOG1270|consensus
Probab=99.63 E-value=6.1e-16 Score=118.91 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=85.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|+|||+|||+|-++..+++ .++.++|+|.++.+++.|++....... .+..
T Consensus 91 ~~ilDvGCGgGLLSepLAr-------------lga~V~GID~s~~~V~vA~~h~~~dP~---~~~~-------------- 140 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR-------------LGAQVTGIDASDDMVEVANEHKKMDPV---LEGA-------------- 140 (282)
T ss_pred ceEEEeccCccccchhhHh-------------hCCeeEeecccHHHHHHHHHhhhcCch---hccc--------------
Confidence 5799999999999999998 368899999999999999998322111 0000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..-++.+...+.+... +.||.|+|+-+++|+.++..++..+.+.|||||.+++++++..
T Consensus 141 ------------------~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 141 ------------------IAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ------------------cceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 0012445555555543 4499999999999999999999999999999999999987764
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.63 E-value=1.5e-15 Score=122.60 Aligned_cols=105 Identities=27% Similarity=0.307 Sum_probs=89.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ..+++++|.|+.+++.++++...
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~-----------~~~VtgVD~S~~mL~~A~~k~~~------------------------ 159 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD-----------AKNVTILDQSPHQLAKAKQKEPL------------------------ 159 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHhhhc------------------------
Confidence 4799999999999999988763 57899999999999999986531
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|.+..++.+++||+|++..+++++++..+++++++++|+|||.+++.+...+
T Consensus 160 --------------------~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 160 --------------------KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred --------------------cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 245677788887787788899999999999999999999999999999999998765443
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.63 E-value=1.7e-15 Score=115.96 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=88.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|+++.++..++++..
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~-------------------------- 79 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRF-----------PQAEFIALDISAGMLAQAKTKLS-------------------------- 79 (240)
T ss_pred eEEEECCCccHHHHHHHHhC-----------CCCcEEEEeChHHHHHHHHHhcC--------------------------
Confidence 79999999999999998876 36779999999999999887643
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...|....++.+.+||+|++..++++..+...++++++++|+|||.+++.++...
T Consensus 80 -------------------~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 80 -------------------ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred -------------------CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 235666777777777778899999999999999999999999999999999999876543
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=2e-15 Score=117.67 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=81.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.++++.
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~-----------~~~~v~gvD~s~~~i~~a~~~~-------------------------- 75 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERW-----------PAARITGIDSSPAMLAEARSRL-------------------------- 75 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHhC--------------------------
Confidence 379999999999999998876 3678999999999999998764
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|..... ...+||+|+++.+++++++...++++++++|||||.+++..
T Consensus 76 --------------------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 76 --------------------PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred --------------------CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 23455556655443 33589999999999999999999999999999999998853
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.61 E-value=4.6e-16 Score=104.88 Aligned_cols=98 Identities=23% Similarity=0.427 Sum_probs=76.5
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 82 (167)
|||+|||+|..+..+.+.++. . +..+++++|+|+.|++.++++....+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~-------~~~~~~gvD~s~~~l~~~~~~~~~~~------------------------ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-G-------PSSRVIGVDISPEMLELAKKRFSEDG------------------------ 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------------SEEEEEES-HHHHHHHHHHSHHTT------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhh-c-------ccceEEEEECCHHHHHHHHHhchhcC------------------------
Confidence 799999999999999987621 0 13789999999999999999886533
Q ss_pred CCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccc--cHHHHHHHHHHhcCCCc
Q psy889 83 SYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVT--RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 83 ~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~--~~~~~l~~~~~~LkpgG 150 (167)
.++.+.+.|..+++...++||+|++. .+++++. +..++++++.++|+|||
T Consensus 49 ------------------~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 49 ------------------PKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------TTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 35778888888877777899999994 4477665 47899999999999998
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=4.2e-15 Score=119.69 Aligned_cols=105 Identities=19% Similarity=0.096 Sum_probs=85.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ...++|+|.|+.++..++........
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g------------~~~V~GiD~S~~~l~q~~a~~~~~~~--------------------- 170 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG------------AKLVVGIDPSQLFLCQFEAVRKLLGN--------------------- 170 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC------------CCEEEEEcCCHHHHHHHHHHHHhcCC---------------------
Confidence 379999999999999998854 34699999999998766544322211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...+.++++. .+.||+|+|..+++|..+...+|+++++.|+|||.+++.++.
T Consensus 171 -------------------~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 171 -------------------DQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred -------------------CCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 1357788888888877 678999999999999999999999999999999999986543
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.60 E-value=4.8e-15 Score=116.73 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=83.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||||+|||.|.++..+++.. +.+++|+++|+...+.+++++...+.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~------------g~~v~gitlS~~Q~~~a~~~~~~~gl--------------------- 110 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERY------------GCHVTGITLSEEQAEYARERIREAGL--------------------- 110 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--------------EEEEEES-HHHHHHHHHHHHCSTS---------------------
T ss_pred CEEEEeCCCccHHHHHHHHHc------------CcEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 589999999999999999987 78999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|..+++. +||.|++..++.++ .+....|++++++|+|||.+++..++
T Consensus 111 -------------------~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 111 -------------------EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -------------------SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred -------------------CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2467777787766543 79999999888888 56789999999999999999987776
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 169 ~~~ 171 (273)
T PF02353_consen 169 HRD 171 (273)
T ss_dssp E--
T ss_pred ccc
Confidence 554
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.59 E-value=1.1e-14 Score=111.63 Aligned_cols=112 Identities=44% Similarity=0.643 Sum_probs=93.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++......
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~----------~~~~v~~~D~s~~~~~~a~~~~~~~~~--------------------- 101 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG----------KTGEVVGLDFSEGMLAVGREKLRDLGL--------------------- 101 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC----------CCCeEEEEeCCHHHHHHHHHhhccccc---------------------
Confidence 4899999999999999988762 257899999999999999988754322
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...|....+...+.||+|++..++++..+...+++++.++|+|||.+++.++..+
T Consensus 102 -------------------~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 102 -------------------SGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred -------------------ccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 1356677777776666667899999999999999999999999999999999999888766
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
..
T Consensus 163 ~~ 164 (239)
T PRK00216 163 TN 164 (239)
T ss_pred Cc
Confidence 54
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.59 E-value=9.3e-15 Score=111.66 Aligned_cols=105 Identities=30% Similarity=0.391 Sum_probs=88.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. +..+++++|+++.+++.++++.....
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~----------~~~~v~~~d~~~~~~~~a~~~~~~~~---------------------- 68 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVG----------PEGRVVGIDRSEAMLALAKERAAGLG---------------------- 68 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcC----------CCcEEEEEeCCHHHHHHHHHHhhCCC----------------------
Confidence 4799999999999999998763 25789999999999999998732211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|....++..+.||+|++..+++++++...++++++++|+|||.+++.+.
T Consensus 69 --------------------~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 69 --------------------PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred --------------------CceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 356777777777777778899999999999999999999999999999999998774
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=9.9e-15 Score=108.58 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... +..+++++|.|+.+++.++++.+..+.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~-----------~~~~V~~iD~s~~~~~~a~~~~~~~~~--------------------- 91 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIAR-----------PELKLTLLESNHKKVAFLREVKAELGL--------------------- 91 (181)
T ss_pred CeEEEecCCCCccHHHHHHHC-----------CCCeEEEEeCcHHHHHHHHHHHHHhCC---------------------
Confidence 479999999999999988655 367899999999999999988876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.++..+.+++. ..++||+|++.. +.+....++.++++|+|||.+++..
T Consensus 92 --------------------~~i~~i~~d~~~~~-~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 92 --------------------NNVEIVNGRAEDFQ-HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --------------------CCeEEEecchhhcc-ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 35777788777653 356899998865 4456678888999999999999854
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=9.3e-15 Score=114.60 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=95.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
|+|||+|||.|.++..+++.+ +.+++|+++|+++.+.+++++...+.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y------------~v~V~GvTlS~~Q~~~~~~r~~~~gl--------------------- 120 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEY------------GVTVVGVTLSEEQLAYAEKRIAARGL--------------------- 120 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHc------------CCEEEEeeCCHHHHHHHHHHHHHcCC---------------------
Confidence 799999999999999999987 68999999999999999999988776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|...+.- .||-|++..+++++.. .+..|+.++++|+|||.+++..+.
T Consensus 121 -------------------~~~v~v~l~d~rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 121 -------------------EDNVEVRLQDYRDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred -------------------CcccEEEecccccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 1468888888777643 3999999999988765 899999999999999999999998
Q ss_pred ccCCcc
Q psy889 159 HVNNSM 164 (167)
Q Consensus 159 ~~~~~~ 164 (167)
.++.+.
T Consensus 179 ~~~~~~ 184 (283)
T COG2230 179 GPDQEF 184 (283)
T ss_pred CCCccc
Confidence 887543
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.58 E-value=9e-15 Score=117.15 Aligned_cols=104 Identities=15% Similarity=-0.034 Sum_probs=81.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ...++|+|.|+.|+..++........
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g------------~~~v~GiDpS~~ml~q~~~~~~~~~~--------------------- 169 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG------------AKSLVGIDPTVLFLCQFEAVRKLLDN--------------------- 169 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC------------CCEEEEEcCCHHHHHHHHHHHHHhcc---------------------
Confidence 479999999999998887643 34699999999998876433221111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..++.+...+.++++.. ..||+|+|..+++|.+++..+|++++++|||||.|++.++
T Consensus 170 -------------------~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 170 -------------------DKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -------------------CCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 03456666666666543 4799999999999999999999999999999999998654
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=1.1e-14 Score=115.59 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=80.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..++. .+.+++++|+|+.+++.++++....+.
T Consensus 123 ~vLDlGcG~G~~~~~la~-------------~g~~V~avD~s~~ai~~~~~~~~~~~l---------------------- 167 (287)
T PRK12335 123 KALDLGCGQGRNSLYLAL-------------LGFDVTAVDINQQSLENLQEIAEKENL---------------------- 167 (287)
T ss_pred CEEEeCCCCCHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 699999999999999987 367899999999999999988765432
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
++.+...|...... +++||+|++..++++++ +...++++++++|+|||++++++
T Consensus 168 --------------------~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 168 --------------------NIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred --------------------ceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 35555555554433 57899999998888764 57889999999999999977654
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.57 E-value=3.1e-15 Score=107.82 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=76.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+.+ .+.+++++|+++.+++. ..
T Consensus 24 ~~vLDiGcG~G~~~~~l~~-------------~~~~~~g~D~~~~~~~~-------~~---------------------- 61 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAK-------------RGFEVTGVDISPQMIEK-------RN---------------------- 61 (161)
T ss_dssp SEEEEESSTTSHHHHHHHH-------------TTSEEEEEESSHHHHHH-------TT----------------------
T ss_pred CEEEEEcCCCCHHHHHHHH-------------hCCEEEEEECCHHHHhh-------hh----------------------
Confidence 4899999999999999866 35689999999999888 10
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
......+.......+++||+|+|..+++++++...++++++++|||||++++.+...
T Consensus 62 ----------------------~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 62 ----------------------VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ----------------------SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ----------------------hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 111111222333456789999999999999999999999999999999999988775
No 40
>PRK06922 hypothetical protein; Provisional
Probab=99.57 E-value=1e-14 Score=125.17 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=82.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.++++....+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-----------P~~kVtGIDIS~~MLe~Ararl~~~g---------------------- 466 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-----------EDKRIYGIDISENVIDTLKKKKQNEG---------------------- 466 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHhhhcC----------------------
Confidence 479999999999999988876 37899999999999999998764322
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC--CCccchhhHhhhhccccc-------------ccHHHHHHHHHHh
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-------------TRIDKALSEAYRV 145 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~-------------~~~~~~l~~~~~~ 145 (167)
.++.+..+|..+++ +.+++||+|+++.++|++ .+..+++++++++
T Consensus 467 --------------------~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV 526 (677)
T PRK06922 467 --------------------RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV 526 (677)
T ss_pred --------------------CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence 23455556655554 556678888777666643 3568899999999
Q ss_pred cCCCcEEEEEeeccc
Q psy889 146 LKPGGRFLCLEFSHV 160 (167)
Q Consensus 146 LkpgG~l~~~~~~~~ 160 (167)
|||||.+++.+..-+
T Consensus 527 LKPGGrLII~D~v~~ 541 (677)
T PRK06922 527 LKPGGRIIIRDGIMT 541 (677)
T ss_pred cCCCcEEEEEeCccC
Confidence 999999999875433
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=8.4e-15 Score=110.69 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=75.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.. +..+++++|+|+.+++.++++....+.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~-----------p~~~v~gVD~s~~~i~~a~~~~~~~~~--------------------- 89 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKAN-----------PDINFIGIEVHEPGVGKALKKIEEEGL--------------------- 89 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHC-----------CCccEEEEEechHHHHHHHHHHHHcCC---------------------
Confidence 379999999999999998876 367899999999999999998865443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeeccc-CCCC--CCccchhhHhhhhcccccc--------cHHHHHHHHHHhcCCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANA-EELP--IESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPG 149 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~v~~~~~~~~~~--------~~~~~l~~~~~~Lkpg 149 (167)
.++.+...|. +.++ +.+++||.|++.....+.. ....++++++++||||
T Consensus 90 --------------------~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 90 --------------------TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred --------------------CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 2344555554 3333 3345566666543322211 2467899999999999
Q ss_pred cEEEEEe
Q psy889 150 GRFLCLE 156 (167)
Q Consensus 150 G~l~~~~ 156 (167)
|.+++..
T Consensus 150 G~l~i~~ 156 (202)
T PRK00121 150 GEIHFAT 156 (202)
T ss_pred CEEEEEc
Confidence 9999865
No 42
>KOG4300|consensus
Probab=99.56 E-value=1.3e-14 Score=108.19 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=88.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-|||+|||+|.. .+.++.. ++..++++|.++.|-+.+.+++.....
T Consensus 79 ~vLEvgcGtG~N----fkfy~~~--------p~~svt~lDpn~~mee~~~ks~~E~k~---------------------- 124 (252)
T KOG4300|consen 79 DVLEVGCGTGAN----FKFYPWK--------PINSVTCLDPNEKMEEIADKSAAEKKP---------------------- 124 (252)
T ss_pred ceEEecccCCCC----cccccCC--------CCceEEEeCCcHHHHHHHHHHHhhccC----------------------
Confidence 379999999977 3333211 367899999999999999998865432
Q ss_pred CCCceeeeeeccccccCCCCceE-EeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLR-FLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++. |+.++.++++ ..+++||.|+|..+++.+.+..+.|.++.|+|||||+++++|+..
T Consensus 125 -------------------~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 125 -------------------LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred -------------------cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 3555 7888888887 788999999999999999999999999999999999999999765
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
-
T Consensus 186 ~ 186 (252)
T KOG4300|consen 186 G 186 (252)
T ss_pred c
Confidence 3
No 43
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.56 E-value=2.2e-14 Score=108.75 Aligned_cols=109 Identities=43% Similarity=0.657 Sum_probs=90.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++.. ..
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~----------~~~~~~~iD~~~~~~~~~~~~~~--~~--------------------- 87 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAP----------DRGKVTGVDFSSEMLEVAKKKSE--LP--------------------- 87 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcC----------CCceEEEEECCHHHHHHHHHHhc--cC---------------------
Confidence 4799999999999999988763 12689999999999999998764 11
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++.+...+..+.+...+.||+|++..++++.++...++++++++|+|||++++.++..+
T Consensus 88 --------------------~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 88 --------------------LNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred --------------------CCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 356677777776666667899999999999999999999999999999999999888765
Q ss_pred CC
Q psy889 161 NN 162 (167)
Q Consensus 161 ~~ 162 (167)
..
T Consensus 148 ~~ 149 (223)
T TIGR01934 148 AN 149 (223)
T ss_pred Cc
Confidence 53
No 44
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=1.4e-14 Score=108.72 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=85.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|.|+|||+|+.|..+++.+ +++.++|+|.|++|++.|++++
T Consensus 33 ~v~DLGCGpGnsTelL~~Rw-----------P~A~i~GiDsS~~Mla~Aa~rl--------------------------- 74 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRW-----------PDAVITGIDSSPAMLAKAAQRL--------------------------- 74 (257)
T ss_pred eeeecCCCCCHHHHHHHHhC-----------CCCeEeeccCCHHHHHHHHHhC---------------------------
Confidence 78999999999999999999 4899999999999999998775
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+..|..+|...+.. +...|+++++.+++|+++...+|.++...|.|||.|.+-.
T Consensus 75 -------------------p~~~f~~aDl~~w~p-~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 75 -------------------PDATFEEADLRTWKP-EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred -------------------CCCceecccHhhcCC-CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 356677777766543 3568999999999999999999999999999999998843
No 45
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.55 E-value=3.9e-14 Score=97.93 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=77.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ..+++++|+++.+++.++++....+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------- 68 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVP-----------NGRVYAIERNPEALRLIERNARRFGV--------------------- 68 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-----------CceEEEEcCCHHHHHHHHHHHHHhCC---------------------
Confidence 4799999999999999998763 57899999999999999988876543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...+... .+....+||.|++... ......++++++++|+|||.+++.-
T Consensus 69 --------------------~~~~~~~~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 69 --------------------SNIVIVEGDAPEALEDSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --------------------CceEEEeccccccChhhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 345555555443 2222357999987543 2345689999999999999999854
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.54 E-value=1.3e-14 Score=113.91 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=86.9
Q ss_pred CeEEeeecCCCchHHHH----HHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 1 MYILFYLVFPGDIAFRF----LNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
++|+|+|||+|..++.+ ++.... .. ....+++|+|+|+.|++.|++...... ..+.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~---~~---~~~~~I~g~Dis~~~L~~Ar~~~y~~~--------------~~~~ 160 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPK---AR---EPDVKILATDIDLKALEKARAGIYPER--------------ELED 160 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhh---cC---CCCeEEEEEECCHHHHHHHHcCCCCHH--------------HHhc
Confidence 48999999999865444 343321 00 024689999999999999997542110 0111
Q ss_pred CC--CCCCCCc----eeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCC
Q psy889 77 LP--IESDSYS----AYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKP 148 (167)
Q Consensus 77 l~--~~~~~fd----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~Lkp 148 (167)
+| .-..+|+ .+.+...++ .++.|...|+.+.+...+.||+|+|.+++++++ ...+++++++++|+|
T Consensus 161 ~~~~~~~~yf~~~~~~~~v~~~ir------~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 161 LPKALLARYFSRVEDKYRVKPELK------ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP 234 (264)
T ss_pred CCHHHHhhhEEeCCCeEEEChHHh------CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC
Confidence 11 0111111 122222222 468899999888776678999999999998885 456899999999999
Q ss_pred CcEEEEEe
Q psy889 149 GGRFLCLE 156 (167)
Q Consensus 149 gG~l~~~~ 156 (167)
||+|++..
T Consensus 235 GG~L~lg~ 242 (264)
T smart00138 235 GGYLFLGH 242 (264)
T ss_pred CeEEEEEC
Confidence 99999843
No 47
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=1.2e-13 Score=104.51 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=78.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.+++++...+.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~----------~~g~V~~iD~~~~~~~~a~~~l~~~~~--------------------- 122 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIE----------RRGKVYTVEIVKELAIYAAQNIERLGY--------------------- 122 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999988763 357899999999999999998876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+.....++||.|++..++.+++ ++++++|+|||+|++..
T Consensus 123 -------------------~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 123 -------------------WGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred -------------------CCcEEEEECCcccCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 1346777777765433456899999877655443 47889999999998843
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.50 E-value=6.9e-14 Score=105.03 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=75.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +...++|+|++..+++.++++....+.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~-----------p~~~v~gvD~~~~~l~~a~~~~~~~~l---------------------- 65 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQN-----------PDKNFLGIEIHTPIVLAANNKANKLGL---------------------- 65 (194)
T ss_pred eEEEeCCCccHHHHHHHHhC-----------CCCCEEEEEeeHHHHHHHHHHHHHhCC----------------------
Confidence 69999999999999999876 377899999999999999988876554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG 150 (167)
.++.++..|...++ ...+++|.|++++...|.+. ...++++++++|||||
T Consensus 66 -------------------~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 66 -------------------KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG 126 (194)
T ss_pred -------------------CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCC
Confidence 34555555554321 22345666665543222221 1568899999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.|++..
T Consensus 127 ~l~~~t 132 (194)
T TIGR00091 127 VIHFKT 132 (194)
T ss_pred EEEEEe
Confidence 998865
No 49
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.49 E-value=2.1e-13 Score=109.07 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=85.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++. +..+++++|. +.+++.++++++..+.
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~-----------p~~~~~~~D~-~~~~~~a~~~~~~~gl--------------------- 197 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHF-----------PELDSTILNL-PGAIDLVNENAAEKGV--------------------- 197 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHC-----------CCCEEEEEec-HHHHHHHHHHHHhCCc---------------------
Confidence 379999999999999999987 3788999997 7899999988876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..++.+...|+...+++ .+|+|++..++|.+.+ ...+++++++.|+|||++++.|+.
T Consensus 198 -------------------~~rv~~~~~d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 198 -------------------ADRMRGIAVDIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred -------------------cceEEEEecCccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 14677888887654443 3699988888886654 468999999999999999999874
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
.
T Consensus 257 ~ 257 (306)
T TIGR02716 257 I 257 (306)
T ss_pred c
Confidence 4
No 50
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=1.3e-13 Score=104.33 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=79.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+.+... +.+++|+|+|+.+++.|+++..
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~-----------~~~v~giDiS~~~l~~A~~~~~-------------------------- 88 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLP-----------FKHIYGVEINEYAVEKAKAYLP-------------------------- 88 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHhhCC--------------------------
Confidence 699999999999999988652 6789999999999999987532
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
++.+...++.. ++.+++||+|++..++++++ +..++++++++++ ++++++.++-.
T Consensus 89 --------------------~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 89 --------------------NINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred --------------------CCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 23445566655 66778999999999988774 4688999999998 57888878754
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 146 ~ 146 (204)
T TIGR03587 146 P 146 (204)
T ss_pred C
Confidence 3
No 51
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=2.2e-13 Score=103.67 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=77.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ...+++++|+++.+++.+++++...+.
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~----------~~~~V~~vE~~~~~~~~a~~~l~~~g~--------------------- 126 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVG----------KSGKVVTIERIPELAEKAKKTLKKLGY--------------------- 126 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999888764 357899999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|........+.||.|++......+ ...+++.|||||+|++.
T Consensus 127 --------------------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 127 --------------------DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred --------------------CCeEEEECCcccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 46777777776544455789999886654332 34678899999999884
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.48 E-value=1.6e-13 Score=112.85 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++.. +.+++|+|+|+.+++.++++...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~------------g~~V~giDlS~~~l~~A~~~~~~------------------------ 212 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHY------------GVSVVGVTISAEQQKLAQERCAG------------------------ 212 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHHhcc------------------------
Confidence 489999999999999998765 57899999999999999987632
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.+...|...+ +++||.|++..+++++. +...++++++++|||||++++.++.
T Consensus 213 --------------------l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 213 --------------------LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred --------------------CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 1244555555443 46799999888887774 4578999999999999999998776
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 270 ~~~ 272 (383)
T PRK11705 270 SNK 272 (383)
T ss_pred CCC
Confidence 543
No 53
>PRK06202 hypothetical protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=105.59 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=79.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++...... ...+++|+|+|+.|++.++++...
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~------------------------- 110 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDG-------LRLEVTAIDPDPRAVAFARANPRR------------------------- 110 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCC-------CCcEEEEEcCCHHHHHHHHhcccc-------------------------
Confidence 799999999999999887542100 245899999999999999876532
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+...++..+++||+|+++.+++++++ ...++++++++++ |.+++.++..
T Consensus 111 -------------------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 111 -------------------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred -------------------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 1233434444444445678999999999999887 4679999999998 6666767665
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 170 ~ 170 (232)
T PRK06202 170 S 170 (232)
T ss_pred C
Confidence 4
No 54
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.46 E-value=3.5e-13 Score=102.75 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=84.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~--------------------- 92 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-------------GANVTGIDASEENIEVAKLHAKKDPL--------------------- 92 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 47999999999999888763 45699999999999999988765432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.+...+..+.+.. .++||+|++...+++..+...+++++.++|+|||.+++.....
T Consensus 93 --------------------~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 93 --------------------LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred --------------------CceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 2355666665544332 3679999999999999999999999999999999999876543
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=3.1e-13 Score=113.92 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=83.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++.... .
T Consensus 40 ~vLDlGcG~G~~~~~la~~-------------~~~v~giD~s~~~l~~a~~~~~~--~---------------------- 82 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKK-------------AGQVIALDFIESVIKKNESINGH--Y---------------------- 82 (475)
T ss_pred EEEEeCCCcCHHHHHHHhh-------------CCEEEEEeCCHHHHHHHHHHhcc--C----------------------
Confidence 7999999999999999874 45799999999999887643211 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC--CCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|+. ..++++++||+|++..+++++++ ...++++++++|||||++++.+.
T Consensus 83 -------------------~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 83 -------------------KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred -------------------CceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 35667777764 35566788999999999998876 67899999999999999999876
Q ss_pred ccc
Q psy889 158 SHV 160 (167)
Q Consensus 158 ~~~ 160 (167)
+..
T Consensus 144 ~~~ 146 (475)
T PLN02336 144 CFH 146 (475)
T ss_pred cCC
Confidence 544
No 56
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=1.2e-13 Score=108.87 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=72.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.+... ....++|+|+|+.+++.|+++.
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~--------~~~~v~giD~s~~~l~~A~~~~--------------------------- 132 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEI--------TTMQLFGLDISKVAIKYAAKRY--------------------------- 132 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccc--------cCCeEEEECCCHHHHHHHHHhC---------------------------
Confidence 69999999999999998865310 1247999999999999998653
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+..+|...+|+.+++||+|++... ...+++++|+|||||++++...+
T Consensus 133 -------------------~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 133 -------------------PQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -------------------CCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 2345566666667777778888876432 23467899999999999987644
No 57
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=3.9e-13 Score=98.96 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=79.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|-++..++... +..+++++|+++.+++.++++++..+.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~-----------~~~~v~~vDi~~~a~~~a~~n~~~n~~--------------------- 80 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRG-----------PDAKVTAVDINPDALELAKRNAERNGL--------------------- 80 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTS-----------TCEEEEEEESBHHHHHHHHHHHHHTTC---------------------
T ss_pred CeEEEecCChHHHHHHHHHhC-----------CCCEEEEEcCCHHHHHHHHHHHHhcCc---------------------
Confidence 379999999999999999876 356799999999999999999987665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc-----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..+. .....||+|+++--++.-. ..++++.++.++|+|||.++++
T Consensus 81 --------------------~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 81 --------------------ENVEVVQSDLFEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp --------------------TTEEEEESSTTTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------ccccccccccccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3366666665432 2257899999876544322 3678899999999999999874
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 140 ~ 140 (170)
T PF05175_consen 140 I 140 (170)
T ss_dssp E
T ss_pred e
Confidence 4
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=6.5e-13 Score=99.01 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=77.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++......
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~-----------~~~~v~~vD~s~~~~~~a~~n~~~~~~--------------------- 80 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQF-----------PSLQVTAIERNPDALRLIKENRQRFGC--------------------- 80 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999998876 367899999999999999988865543
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...+... +. ...||+|++.... ..+..++..++++|+|||++++....
T Consensus 81 --------------------~~i~~~~~d~~~-~~-~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 81 --------------------GNIDIIPGEAPI-EL-PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred --------------------CCeEEEecCchh-hc-CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 345555555432 22 3568999876532 34567889999999999999886543
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=7.2e-13 Score=98.11 Aligned_cols=124 Identities=18% Similarity=0.061 Sum_probs=79.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.. +.+++++|+++.+++.++++....+. ++++..+|....+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~-- 79 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK-------------GKCILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV-- 79 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--
Confidence 37999999999999998873 34899999999999999998865432 3566666654432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.+.||.+.+..+.......... ....+..+. ..-.......+++++++++|+|||.+++...+..
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRR--------------GDWLDVAID-GGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCcccEEEECCCCCCCcchhcc--------------cchhhhhhh-cCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 3367766666555332111000 000111111 0000111256789999999999999999776544
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.45 E-value=5.9e-13 Score=99.53 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=79.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||.|..+..+++ .|..++++|.|+..++.+++.++..+.
T Consensus 33 ~~LDlgcG~GRNalyLA~-------------~G~~VtAvD~s~~al~~l~~~a~~~~l---------------------- 77 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLAS-------------QGFDVTAVDISPVALEKLQRLAEEEGL---------------------- 77 (192)
T ss_dssp EEEEES-TTSHHHHHHHH-------------TT-EEEEEESSHHHHHHHHHHHHHTT-----------------------
T ss_pred cEEEcCCCCcHHHHHHHH-------------CCCeEEEEECCHHHHHHHHHHHhhcCc----------------------
Confidence 799999999999999998 478899999999999999887766554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.....|+....+. ..||+|++..+++++ +...++++.+.+.++|||++++..+.
T Consensus 78 --------------------~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 78 --------------------DIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp --------------------TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred --------------------eeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 477777887776654 679999886666655 34678999999999999999986553
No 61
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.45 E-value=6e-13 Score=101.37 Aligned_cols=98 Identities=16% Similarity=0.044 Sum_probs=75.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ...+++++|+++.+++.+++++...+.
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~----------~~g~V~~vD~~~~~~~~A~~~~~~~g~--------------------- 127 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVG----------RDGLVVSIERIPELAEKAERRLRKLGL--------------------- 127 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 4799999999999999988763 356799999999999999999887654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|..........||+|++..... .+.+.+++.|+|||++++.
T Consensus 128 --------------------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 128 --------------------DNVIVIVGDGTQGWEPLAPYDRIYVTAAGP------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred --------------------CCeEEEECCcccCCcccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEEEE
Confidence 456777777655433346799998765433 2345678999999999884
No 62
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.44 E-value=3.2e-13 Score=100.50 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=78.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||.|.++..++..+ .+++++|+|+..++.|+++....
T Consensus 46 ~alEvGCs~G~lT~~LA~rC-------------d~LlavDis~~Al~~Ar~Rl~~~------------------------ 88 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPRC-------------DRLLAVDISPRALARARERLAGL------------------------ 88 (201)
T ss_dssp EEEEE--TTSHHHHHHGGGE-------------EEEEEEES-HHHHHHHHHHTTT-------------------------
T ss_pred eeEecCCCccHHHHHHHHhh-------------CceEEEeCCHHHHHHHHHhcCCC------------------------
Confidence 68999999999999999976 46999999999999999998643
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc---cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...+.... .+.+.||+|+++-+++++. ++..++.++.+.|+|||.|++..+.
T Consensus 89 -------------------~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 89 -------------------PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp -------------------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred -------------------CCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4688888888664 4568999999998888775 4678899999999999999997764
No 63
>PLN03075 nicotianamine synthase; Provisional
Probab=99.43 E-value=8.2e-13 Score=104.61 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=82.4
Q ss_pred eEEeeecCCCchHHHHHH--hhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh-cccCCCCCCcccccccccccCC
Q psy889 2 YILFYLVFPGDIAFRFLN--YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
+|+|+|||.|.++..++. +. ++++++++|+++++++.|++.+.. .+.
T Consensus 126 ~VldIGcGpgpltaiilaa~~~-----------p~~~~~giD~d~~ai~~Ar~~~~~~~gL------------------- 175 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHHL-----------PTTSFHNFDIDPSANDVARRLVSSDPDL------------------- 175 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHhhhccCc-------------------
Confidence 799999998866555443 34 478999999999999999998854 333
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.|...|..+.....+.||+|++. +++.+ ++..+++++++++|+|||.+++..
T Consensus 176 ---------------------~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 176 ---------------------SKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ---------------------cCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 256889888887654335789999999 66655 689999999999999999999854
No 64
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.42 E-value=2.1e-13 Score=99.49 Aligned_cols=88 Identities=32% Similarity=0.503 Sum_probs=73.8
Q ss_pred EEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCc
Q psy889 38 TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES 117 (167)
Q Consensus 38 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 117 (167)
+|+|+|+.|++.|+++.+..... ...++.++.+|.+++++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--------------------------------------~~~~i~~~~~d~~~lp~~~ 42 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--------------------------------------CYKCIEWIEGDAIDLPFDD 42 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--------------------------------------CCCceEEEEechhhCCCCC
Confidence 48999999999998776432110 0135788889998899888
Q ss_pred cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccCCc
Q psy889 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 163 (167)
Q Consensus 118 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 163 (167)
++||+|++..+++++++...++++++|+|||||.+++.+++.+++.
T Consensus 43 ~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~ 88 (160)
T PLN02232 43 CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQS 88 (160)
T ss_pred CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChH
Confidence 8999999999999999999999999999999999999999977653
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=1.3e-12 Score=100.45 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=82.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++......
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~--------------------- 95 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARL-------------GADVTGIDASEENIEVARLHALESGL--------------------- 95 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHc-------------CCeEEEEcCCHHHHHHHHHHHHHcCC---------------------
Confidence 37999999999999888762 56799999999999999988754331
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.+...+..+.+ ...+.||+|++..++++.++...+++++.++|+|||.+++..+.
T Consensus 96 ---------------------~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 96 ---------------------KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ---------------------ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2445555554433 23468999999999999999999999999999999999987654
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.40 E-value=1.7e-12 Score=97.76 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=77.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++.... ...+++++|+++.+++.++++....+.
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~----------~~~~v~avD~~~~~~~~a~~n~~~~g~--------------------- 90 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVG----------ETGKVYAVDKDEKAINLTRRNAEKFGV--------------------- 90 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHhCC---------------------
Confidence 3799999999999999987653 357899999999999999999876542
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|..+. +...+.||.|++.. ....+..+++.+.++|+|||++++
T Consensus 91 -------------------~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 91 -------------------LNNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred -------------------CCCeEEEEechhhhHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEE
Confidence 03455555555442 22235789988743 245678899999999999999987
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.40 E-value=1.5e-12 Score=105.63 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=77.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|+|+.+++.++++++..+.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~-----------p~~~v~~vDis~~Al~~A~~nl~~n~l---------------------- 245 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHS-----------PKIRLTLSDVSAAALESSRATLAANGL---------------------- 245 (342)
T ss_pred eEEEeccCcCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 69999999999999999876 367899999999999999998876443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc-----cccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+...|.... ..+.||+|+++-.+|. .....++++++.++|+|||.|+++.
T Consensus 246 --------------------~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 --------------------EGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred --------------------CCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 123333443221 2467999999877764 2346788999999999999999865
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.39 E-value=2.1e-12 Score=105.81 Aligned_cols=105 Identities=16% Similarity=0.079 Sum_probs=76.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++.. +..+++++|.|+.+++.++++++..... ..
T Consensus 231 ~VLDLGCGtGvi~i~la~~~-----------P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~----------------- 280 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKN-----------PQAKVVFVDESPMAVASSRLNVETNMPE--AL----------------- 280 (378)
T ss_pred eEEEEeccccHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCcc--cC-----------------
Confidence 79999999999999999876 3789999999999999999988644320 00
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-----ccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|.... ....+||+|+|+--+|.. ....++|++++++|+|||.|+++.
T Consensus 281 -------------------~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 281 -------------------DRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -------------------ceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1345554444221 223468888886554422 124688999999999999999964
No 69
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.38 E-value=3.2e-12 Score=97.44 Aligned_cols=117 Identities=8% Similarity=-0.015 Sum_probs=80.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||.|..+..+++ .+.+++|+|+|+.+++.+.+.... .. ...+ +
T Consensus 37 rvLd~GCG~G~da~~LA~-------------~G~~V~gvD~S~~Ai~~~~~~~~~-~~----------~~~~---~---- 85 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAE-------------QGHRVLGVELSEIAVEQFFAENGL-TP----------TVTQ---Q---- 85 (213)
T ss_pred eEEEeCCCchhHHHHHHh-------------CCCeEEEEeCCHHHHHHHHHHcCC-Cc----------ceec---c----
Confidence 799999999999999987 478899999999999986432210 00 0000 0
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.+. .....++.+..+|+.++... .+.||.|+...++++++. ..+.++.+.+.|||||.+++..+.
T Consensus 86 ~~~~-----------~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 86 GEFT-----------RYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccce-----------eeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 0000 00124678888888766532 356888887666666643 467899999999999998887776
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
..
T Consensus 155 ~~ 156 (213)
T TIGR03840 155 YD 156 (213)
T ss_pred cC
Confidence 53
No 70
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=3e-12 Score=97.60 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=77.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.++++......
T Consensus 57 ~~vLDiGcG~G~~~~~la~-------------~~~~v~gvD~s~~~i~~a~~~~~~~~~--------------------- 102 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAK-------------RGAIVKAVDISEQMVQMARNRAQGRDV--------------------- 102 (219)
T ss_pred CEEEEEeCCCCHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 3799999999999999976 256899999999999999998864332
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+...|....+ .+||+|++..++++++ +...+++++++++++++++.+
T Consensus 103 -------------------~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 103 -------------------AGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -------------------CCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 135777777776654 6799999988877654 467889999999987766654
No 71
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=1e-12 Score=90.26 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=73.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+. ..++++..+|.....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~------------~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~-- 63 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG------------AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLP-- 63 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC------------TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHH--
T ss_pred CEEEEcCcchHHHHHHHHHHC------------CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhch--
Confidence 379999999999999998864 37899999999999999999876554 223444444444432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--------ccHHHHHHHHHHhcCCCcEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRF 152 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l 152 (167)
......+||+|+++--+... .....+++++.++|+|||.+
T Consensus 64 --------------------------------~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 64 --------------------------------EPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp --------------------------------HTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred --------------------------------hhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence 01334445555553322211 13467889999999999999
Q ss_pred EEEe
Q psy889 153 LCLE 156 (167)
Q Consensus 153 ~~~~ 156 (167)
+++.
T Consensus 112 ~~~~ 115 (117)
T PF13659_consen 112 VFIT 115 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9864
No 72
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.37 E-value=2.6e-12 Score=105.21 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=78.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||+|.++..++... +...++|+|+++.+++.+.+++...+.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~-----------P~~~~iGIEI~~~~i~~a~~ka~~~gL---------------------- 171 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNN-----------PNKLFIGIEIHTPSIEQVLKQIELLNL---------------------- 171 (390)
T ss_pred eEEEEcCcccHHHHHHHHhC-----------CCCCEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 69999999999999999977 478899999999999999999876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccccccc------HHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR------IDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.++..|+..+ .++++++|.|++++...|... ....+.+++|+|+|||.+.
T Consensus 172 -------------------~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 172 -------------------KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred -------------------CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 4566666665432 345567777776554333222 2567899999999999999
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+.+
T Consensus 233 l~T 235 (390)
T PRK14121 233 LRT 235 (390)
T ss_pred EEE
Confidence 854
No 73
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.37 E-value=3.4e-12 Score=101.42 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=74.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++....+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g------------~~~V~avDid~~al~~a~~n~~~n~~--------------------- 207 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLG------------AAKVVGIDIDPLAVESARKNAELNQV--------------------- 207 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 489999999999998877532 45899999999999999998875443
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..++.+...+.. ....++||+|+++... ..+..++.+++++|||||+++++.+..
T Consensus 208 -------------------~~~~~~~~~~~~--~~~~~~fDlVvan~~~---~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 208 -------------------SDRLQVKLIYLE--QPIEGKADVIVANILA---EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred -------------------CcceEEEecccc--cccCCCceEEEEecCH---HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 022333333321 2234679999886532 335678899999999999999987653
No 74
>KOG1271|consensus
Probab=99.36 E-value=9.4e-13 Score=96.56 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=83.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||.|++...+++.. -...++|+|.|+.+++.|+..+++.+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-----------f~~~L~GvDYs~~AV~LA~niAe~~~~---------------------- 116 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG-----------FQSKLTGVDYSEKAVELAQNIAERDGF---------------------- 116 (227)
T ss_pred ceeeccCCchHHHHHHHHhc-----------CCCCccccccCHHHHHHHHHHHHhcCC----------------------
Confidence 89999999999999998865 245699999999999999988887765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc--------ccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~ 153 (167)
...+.|.++|..+..+..+.||+|+--.++..+ ..+...+..+.+.|+|||+|+
T Consensus 117 ------------------~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 117 ------------------SNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred ------------------CcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 134677777766655556667777654433322 112456788899999999999
Q ss_pred EEeecccCCcc
Q psy889 154 CLEFSHVNNSM 164 (167)
Q Consensus 154 ~~~~~~~~~~~ 164 (167)
|+.++.....+
T Consensus 179 ItSCN~T~dEL 189 (227)
T KOG1271|consen 179 ITSCNFTKDEL 189 (227)
T ss_pred EEecCccHHHH
Confidence 99888765443
No 75
>KOG2899|consensus
Probab=99.34 E-value=5.1e-12 Score=96.43 Aligned_cols=133 Identities=8% Similarity=0.036 Sum_probs=81.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-+||+||++|.++..+++++. ...+.|+|+++..++.|+++++....+ +..+. ++... .+.-
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~-----------~r~iLGvDID~~LI~~Ark~~r~~~~~---~~~~~---~~~~~-~~~~ 122 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFG-----------PRRILGVDIDPVLIQRARKEIRFPCDH---ETEVS---GKFPA-SFGV 122 (288)
T ss_pred eeEeccCCcchhHHHHHHhhc-----------cceeeEeeccHHHHHHHHHhccccccc---ccccc---CCCcc-cccc
Confidence 479999999999999999985 456999999999999999987532110 00000 00000 0000
Q ss_pred CCCceeeeeecccccc--------CCCCceEEeecccCCCCCCccchhhHhhhhccccc------ccHHHHHHHHHHhcC
Q psy889 82 DSYSAYTIAFGIRNID--------IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV------TRIDKALSEAYRVLK 147 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~------~~~~~~l~~~~~~Lk 147 (167)
.........+..+.++ ....+..+...|+- ......||+|+|..+..|+ ..+.++|.++++.|+
T Consensus 123 ~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~ 200 (288)
T KOG2899|consen 123 QFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH 200 (288)
T ss_pred ccccccccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC
Confidence 0011111111111111 12233333333332 3456789999998766654 358999999999999
Q ss_pred CCcEEEE
Q psy889 148 PGGRFLC 154 (167)
Q Consensus 148 pgG~l~~ 154 (167)
|||+|++
T Consensus 201 pgGiLvv 207 (288)
T KOG2899|consen 201 PGGILVV 207 (288)
T ss_pred cCcEEEE
Confidence 9999988
No 76
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=7e-12 Score=104.81 Aligned_cols=129 Identities=13% Similarity=0.105 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... ..++++++|+++.+++.++++++..+. .+++...+|+..++
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMG----------DQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLEL 318 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhC----------CCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhcccc
Confidence 4799999999999999998764 256899999999999999999987765 24666677766654
Q ss_pred --CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 79 --IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+..+.||.+.+..+-+....... . .+..+....-++- ........++.+++++|||||+|++++
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r-------~-p~~~~~~~~~~~~------~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHR-------H-PDARWRQTPEKIQ------ELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred cccccccCCEEEEeCCCCccccccc-------C-cchhhhCCHHHHH------HHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 33456666655443321100000 0 0000000000110 011235788999999999999999876
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
++
T Consensus 385 cs 386 (434)
T PRK14901 385 CT 386 (434)
T ss_pred CC
Confidence 54
No 77
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.34 E-value=6.9e-12 Score=82.43 Aligned_cols=101 Identities=27% Similarity=0.372 Sum_probs=78.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||+|.++..++. . ...+++++|.++..++.+++.......
T Consensus 1 ~ildig~G~G~~~~~~~~-~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~---------------------- 46 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-----------PGARVTGVDISPVALELARKAAAALLA---------------------- 46 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-----------CCCEEEEEeCCHHHHHHHHHHHhcccc----------------------
Confidence 589999999999988877 2 367899999999999999853322221
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCC-CccchhhHhhhhcccc-cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...+..+... ..+.||++++...+++ ......+++.+.+.|+|||.+++.
T Consensus 47 -------------------~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 47 -------------------DNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------------------cceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345566666555432 4567999999988887 777899999999999999999875
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.34 E-value=8.5e-12 Score=93.67 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=72.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ++.+++++|+++.+++.++++++..+.
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~-----------~~~~V~~vD~s~~~~~~a~~n~~~~~~--------------------- 89 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLC-----------PKGRVIAIERDEEVVNLIRRNCDRFGV--------------------- 89 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHC-----------CCCEEEEEeCCHHHHHHHHHHHHHhCC---------------------
Confidence 379999999999999998755 367899999999999999999876553
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.++.+...|... .......+|.++. ........++.+++++|+|||++++...+
T Consensus 90 --------------------~~v~~~~~d~~~~~~~~~~~~d~v~~----~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 90 --------------------KNVEVIEGSAPECLAQLAPAPDRVCI----EGGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCeEEEECchHHHHhhCCCCCCEEEE----ECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234444444422 1111112344322 11235678999999999999999986644
No 79
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.34 E-value=8.7e-12 Score=98.84 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=87.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+. ..++++..+|..+ +++.
T Consensus 117 ~vLDlG~GsG~i~l~la~~~-----------~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~-~~~~ 180 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEF-----------PNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFE-PLAG 180 (284)
T ss_pred EEEEEeccHhHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhc-cCcC
Confidence 79999999999999999876 367899999999999999999876553 2357888888655 3444
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..||.+++.++.-..... .. ..... .......+. ..-..+...++++.++.++|+|||++++ +++.
T Consensus 181 ~~fDlIvsNPPyi~~~~~------~~--~~~~~--~~eP~~AL~-gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~ 246 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDL------AD--LPNVV--RFEPLLALV-GGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN 246 (284)
T ss_pred CCccEEEECCCCCCcchh------hc--CCccc--ccCcHHHhc-CCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc
Confidence 478888887766421100 00 00000 000011111 1122345678899999999999999887 5553
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.32 E-value=6.3e-12 Score=97.90 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=70.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....+.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g------------~~~v~giDis~~~l~~A~~n~~~~~~--------------------- 167 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLG------------AKKVLAVDIDPQAVEAARENAELNGV--------------------- 167 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 479999999999988776532 34599999999999999998865432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+...+ .+||+|+++.. ...+..++.+++++|||||++++..+...
T Consensus 168 -------------------~~~~~~~~~~--------~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 168 -------------------ELNVYLPQGD--------LKADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred -------------------CceEEEccCC--------CCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 0112222111 26899987543 22356788999999999999999876543
No 81
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.32 E-value=9.8e-12 Score=99.59 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=85.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.|+++++..+. .+++++..+|+.+ .++.
T Consensus 136 ~VLDlG~GsG~iai~la~~~-----------p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~-~l~~ 199 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAF-----------PDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFA-ALPG 199 (307)
T ss_pred EEEEEechhhHHHHHHHHHC-----------CCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhh-hCCC
Confidence 79999999999999999876 368899999999999999999876553 2467888888654 2234
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
..||.+++.+|.-.... +.... ..+. ......+. ..-......+.+++++.++|+|||.+++ +...
T Consensus 200 ~~fDlIvsNPPyi~~~~------~~~l~-~~~~---~eP~~AL~-gg~dGl~~~~~i~~~a~~~L~pgG~l~~-E~g~ 265 (307)
T PRK11805 200 RRYDLIVSNPPYVDAED------MADLP-AEYR---HEPELALA-AGDDGLDLVRRILAEAPDYLTEDGVLVV-EVGN 265 (307)
T ss_pred CCccEEEECCCCCCccc------hhhcC-Hhhc---cCccceee-CCCchHHHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 57888888766532110 00000 0000 00011111 0111233457789999999999999988 6554
No 82
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.32 E-value=1.2e-11 Score=98.11 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=85.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.|++++...+. ..++++..+|..+ +++.
T Consensus 124 ~vLDlG~GsG~i~~~la~~~-----------~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~-~~~~ 187 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAF-----------PEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFA-ALPG 187 (284)
T ss_pred EEEEEeCchhHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhh-ccCC
Confidence 79999999999999999876 367899999999999999999876653 2367788888643 2334
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
+.||.+++.+|...... +... ...+ .......+.. .-......+.+++++.++|+|||++++ +++.
T Consensus 188 ~~fD~Iv~NPPy~~~~~------~~~l-~~~~---~~ep~~al~g-g~dGl~~~~~il~~a~~~L~~gG~l~~-e~g~ 253 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAED------MADL-PAEY---HHEPELALAS-GEDGLDLVRRILAEAADHLNENGVLVV-EVGN 253 (284)
T ss_pred CCccEEEECCCCCCccc------hhhC-CHhh---hcCHHHHhcC-CCcHHHHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 56887777766532110 0000 0000 0001111110 111233457889999999999999987 6654
No 83
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.32 E-value=7.3e-12 Score=98.85 Aligned_cols=103 Identities=19% Similarity=0.100 Sum_probs=81.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||||||+|..+..++... ...++|+|.+...+...+..-.-.+.
T Consensus 117 k~VLDIGC~nGY~~frM~~~G------------A~~ViGiDP~~lf~~QF~~i~~~lg~--------------------- 163 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRG------------AKSVIGIDPSPLFYLQFEAIKHFLGQ--------------------- 163 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcC------------CCEEEEECCChHHHHHHHHHHHHhCC---------------------
Confidence 489999999999999998854 45699999999887776543322221
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+.++....++++. .+.||.|+|..++.|..++-..|+++++.|+|||.|++=+
T Consensus 164 -------------------~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 164 -------------------DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -------------------CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 0234444456677776 6789999999999999999999999999999999999843
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.31 E-value=1.1e-11 Score=95.93 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=83.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++.... ..+++++|+++.+++.++++....+. .++++..+|+.+ +++.
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~-----------~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERP-----------DARVTAVDISPEALAVARKNAARLGL-----DNVTFLQSDWFE-PLPG 152 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhc-cCcC
Confidence 799999999999999998763 67899999999999999998876543 257788888765 4556
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
+.||.+++.++........ ....+... . ........ .-........+++++.++|+|||.+++
T Consensus 153 ~~fD~Vi~npPy~~~~~~~----~~~~~~~~--~--e~~~~~~~--~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIH----LLDPEVRF--H--EPRLALFG--GEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CceeEEEECCCCCchhhhh----hcChhhhh--c--CCHHHHcC--CCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 7788887776654211100 00000000 0 00000000 112234456788999999999999988
No 85
>PRK04266 fibrillarin; Provisional
Probab=99.31 E-value=1.3e-11 Score=94.87 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=68.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++... ..+++++|+++.|++.+.+++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-----------~g~V~avD~~~~ml~~l~~~a~~~----------------------- 119 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-----------EGVVYAVEFAPRPMRELLEVAEER----------------------- 119 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-----------CCeEEEEECCHHHHHHHHHHhhhc-----------------------
Confidence 4899999999999999998763 468999999999999887665432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..|.... .. ..+||+|++... .......++.+++++|||||.+++
T Consensus 120 --------------------~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 120 --------------------KNIIPILADARKPERYAHV-VEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred --------------------CCcEEEECCCCCcchhhhc-cccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 1344444444321 11 234888875321 111224568999999999999999
No 86
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=1.1e-11 Score=104.03 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ...+++++|+++.+++.++++++..+. .++++..+|+..++ +
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~----------~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQ----------NRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-P 315 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-c
Confidence 3799999999999999988764 356899999999999999999987664 24566666655543 3
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-ccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.+.||.+.+..+-.... .+. - ..+..+.. ....+..+ .....+|.+++++|||||++++.+++.
T Consensus 316 ~~~fD~Vl~D~Pcsg~g------~~~-r-~p~~~~~~-------~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 316 EEQPDAILLDAPCTGTG------VLG-R-RAELRWKL-------TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCCEEEEcCCCCCcc------hhh-c-CcchhhcC-------CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34555444432221100 000 0 00000000 00000111 234578999999999999999977664
No 87
>KOG2361|consensus
Probab=99.31 E-value=2.3e-12 Score=98.18 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=86.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||.|.....+++.... ....++++|.|+.+++..+++...... +
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n---------~~l~v~acDfsp~Ai~~vk~~~~~~e~------~--------------- 123 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN---------NRLKVYACDFSPRAIELVKKSSGYDES------R--------------- 123 (264)
T ss_pred hheeeccCCCcccchhhhcCCC---------CCeEEEEcCCChHHHHHHHhccccchh------h---------------
Confidence 5899999999999999885431 247899999999999999976532111 0
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC--CCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....+...+.+ ..+...+++|.+++-+++..++ .+.+++++++++|||||.+++.|+
T Consensus 124 -------------------~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 124 -------------------VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred -------------------hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 11112222222 2356678999999988887654 478999999999999999999999
Q ss_pred cccCCccCC
Q psy889 158 SHVNNSMLQ 166 (167)
Q Consensus 158 ~~~~~~~~~ 166 (167)
+.-+..++|
T Consensus 185 g~~DlaqlR 193 (264)
T KOG2361|consen 185 GRYDLAQLR 193 (264)
T ss_pred ccchHHHHh
Confidence 887766554
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.31 E-value=1.3e-11 Score=99.82 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=76.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++. .+.+++|+|+++.|+..++++++..+.. .+.+..+|+.++++.
T Consensus 184 ~~vLDp~cGtG~~lieaa~-------------~~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGL-------------MGAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATKLPLS 245 (329)
T ss_pred CEEEECCCCCCHHHHHHHH-------------hCCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhcCCcc
Confidence 3799999999999877654 2678999999999999999998876541 145556666666555
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+++.+|.-. +... ..+.. .....++++++++|+|||++++....
T Consensus 246 ~~~~D~Iv~dPPyg~------~~~~----------------------~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 246 SESVDAIATDPPYGR------STTA----------------------AGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cCCCCEEEECCCCcC------cccc----------------------cCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 555665555544311 0000 00011 22478899999999999999886544
No 89
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.30 E-value=1.2e-11 Score=97.04 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=83.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..+++.+. ..++++++|+++.+++.++++++..+. .+++...+|...++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMK----------NEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAA 137 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcC----------CCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhh
Confidence 4799999999999999998774 256899999999999999999987664 2466677776665544
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+.+..+-+....- .-+. +..+....=++. ........+|+++.++|||||++++++++
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~-------~~~p-~~~~~~~~~~~~------~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVI-------RKDP-SRKKNWSEEDIQ------EISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred ccCCCEEEEcCCCCCCccc-------ccCh-hhhhcCCHHHHH------HHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4557766665444321100 0000 000000000000 01123456899999999999999987655
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.30 E-value=1.5e-11 Score=98.34 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=73.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++++. .+.+++++|+|++|++.+++++..... .
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~----------~~~~~~~iDiS~~mL~~a~~~l~~~~p----~----------------- 114 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALR----------QPARYVPIDISADALKESAAALAADYP----Q----------------- 114 (301)
T ss_pred eEEecCCCcchhHHHHHHhhc----------cCCeEEEEECCHHHHHHHHHHHHhhCC----C-----------------
Confidence 699999999999999999873 257899999999999999998764321 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCcc----chhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESD----SYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~----~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++.+|+.+ .+.... ...++++...+++++ +..++|++++++|+|||.|++
T Consensus 115 -------------------~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 115 -------------------LEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred -------------------ceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 234455566544 222211 122333334455544 467899999999999999987
Q ss_pred E
Q psy889 155 L 155 (167)
Q Consensus 155 ~ 155 (167)
.
T Consensus 176 g 176 (301)
T TIGR03438 176 G 176 (301)
T ss_pred e
Confidence 3
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.30 E-value=1.5e-11 Score=93.36 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=72.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..++.. ..+++++|+++.+++.++++++..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~-------------~~~v~~vd~~~~~~~~a~~~~~~~~~--------------------- 125 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHL-------------VRRVFSVERIKTLQWEAKRRLKQLGL--------------------- 125 (212)
T ss_pred CEEEEECCCccHHHHHHHHH-------------hCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 48999999999999877663 24799999999999999999876654
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+...|........+.||+|++...+.++ .+.+++.|+|||.+++.-.
T Consensus 126 --------------------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 --------------------HNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred --------------------CceEEEECCcccCCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 34666666654422234679999886654333 4567899999999998543
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=1.2e-11 Score=93.93 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=64.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|..+..+++... ...+++++|+++ + ...
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~----------~~~~V~aVDi~~-~----------~~~---------------------- 90 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIG----------DKGRVIACDILP-M----------DPI---------------------- 90 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcC----------CCceEEEEeccc-c----------cCC----------------------
Confidence 799999999999999998764 357899999988 1 011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--------CCccchhhHhhhhcccccc-----------cHHHHHHHH
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVT-----------RIDKALSEA 142 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~v~~~~~~~~~~-----------~~~~~l~~~ 142 (167)
.++.+..+|..... ...+.||+|++....++.. ....+++++
T Consensus 91 -------------------~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~ 151 (209)
T PRK11188 91 -------------------VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC 151 (209)
T ss_pred -------------------CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHH
Confidence 12334444443321 3345567776644332211 125689999
Q ss_pred HHhcCCCcEEEEEeecc
Q psy889 143 YRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 143 ~~~LkpgG~l~~~~~~~ 159 (167)
+++|+|||.|++..+..
T Consensus 152 ~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 152 RDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHcCCCCEEEEEEecC
Confidence 99999999999977654
No 93
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=1.4e-11 Score=102.96 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=82.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
.+|||+|||+|..+.+++..+. ..++++++|+++.+++.++++++..+. .++++..+|...++ +
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~----------~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMK----------DQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEY 303 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhh
Confidence 3799999999999999998764 367899999999999999999987765 23556666655554 3
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh---hhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.||.+.+..+-..+..... + .|+... ...........++|.+++++|||||++++++
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~-------~----------p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARN-------H----------PEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred hhccCCEEEECCCCCCCccccC-------C----------hHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3445665554433322110000 0 000000 0000011234778999999999999999977
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
++-
T Consensus 367 Cs~ 369 (431)
T PRK14903 367 CTV 369 (431)
T ss_pred CCC
Confidence 663
No 94
>PRK14967 putative methyltransferase; Provisional
Probab=99.30 E-value=1.4e-11 Score=94.28 Aligned_cols=121 Identities=17% Similarity=0.060 Sum_probs=73.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+. ++++..+|+... ++.
T Consensus 39 ~vLDlGcG~G~~~~~la~~~------------~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~-~~~ 99 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAG------------AGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARA-VEF 99 (223)
T ss_pred eEEEecCCHHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhh-ccC
Confidence 79999999999999887632 34899999999999999988865432 345555555432 344
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+.||.+.+..+........ . .....+..+. ........+..++++++++|||||+++++.
T Consensus 100 ~~fD~Vi~npPy~~~~~~~------------~--~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDA------------P--PSRGPARAWD-AGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCeeEEEECCCCCCCCccc------------c--cccChhHhhh-CCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5666666554432110000 0 0000000000 000011235678899999999999999854
No 95
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.29 E-value=2.5e-11 Score=92.79 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=78.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
||||+|||.|..+..+++ .+.+++|+|+|+.+++.+.+.. +..+ .....++
T Consensus 40 rvL~~gCG~G~da~~LA~-------------~G~~V~avD~s~~Ai~~~~~~~---~l~~-----~~~~~~~-------- 90 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAE-------------QGHEVLGVELSELAVEQFFAEN---GLTP-----QTRQSGE-------- 90 (218)
T ss_pred eEEEeCCCChHhHHHHHh-------------CCCeEEEEccCHHHHHHHHHHc---CCCc-----ccccccc--------
Confidence 799999999999999987 4788999999999999864321 1100 0000000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+. .....++.+..+|..++... .+.||.|+...++++++. ..++++.+.+.|+|||.+++..+.
T Consensus 91 --~~-----------~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 91 --FE-----------HYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred --cc-----------ccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 00 00124677778887766432 256888887777666653 468899999999999976665554
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
.+
T Consensus 158 ~~ 159 (218)
T PRK13255 158 YP 159 (218)
T ss_pred eC
Confidence 43
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=2.8e-11 Score=89.59 Aligned_cols=124 Identities=23% Similarity=0.171 Sum_probs=74.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+. ....+++..+|..+ ++..
T Consensus 26 ~vLd~G~G~G~~~~~l~~~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 26 RVLEVGTGSGIVAIVAAKN-------------GKKVVGVDINPYAVECAKCNAKLNNI---RNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred EEEEEccccCHHHHHHHhh-------------cceEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEeccccc-cccc
Confidence 6999999999999999873 57899999999999999988865443 11115555555443 2333
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..||.+..+.+....... . . . ...++.... ........+..+++++.++|+|||.+++...
T Consensus 89 ~~~d~vi~n~p~~~~~~~---~--------~--~-~~~~~~~~~-~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEE---E--------E--W-DDWLNYALS-GGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCch---h--------h--h-hhhhhhhhc-cCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356655554333110000 0 0 0 000111100 0111123357789999999999999987653
No 97
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.27 E-value=2.5e-11 Score=92.75 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=73.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++++ +.+++++|+|+.+++.++++....+.
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~-------------~~~v~~~D~s~~~i~~a~~~~~~~~~--------------------- 110 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARR-------------GAKVVASDISPQMVEEARERAPEAGL--------------------- 110 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcCC---------------------
Confidence 37999999999999998873 45699999999999999998765432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+...|.+ ..+++||+|++..++++++ ....+++++.+.+++++.+.
T Consensus 111 -------------------~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 111 -------------------AGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -------------------ccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 124666666633 2356799999998887654 46788888888776555443
No 98
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=3.4e-11 Score=100.52 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=77.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
.+|||+|||+|..+..+++.+. .++++++|+++.+++.++++++..+.. .+++...+|....++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-----------~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-----------QAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGPSQW 304 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-----------CCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEecccccccccc
Confidence 3799999999999999998762 578999999999999999999877651 123334444433332
Q ss_pred -CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 80 -ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 80 -~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.+.||.+.+.-+-+....-.. ..+..+....=|+. ........+|.+++++|||||.|++++++
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~--------~p~~~~~~~~~~~~------~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRR--------HPDIKWLRKPRDIA------ELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ccccccCEEEEcCCCCCCccccc--------CcchhhcCCHHHHH------HHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3344444443322211100000 00000000000000 00122467899999999999999998766
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
-
T Consensus 371 ~ 371 (426)
T TIGR00563 371 V 371 (426)
T ss_pred C
Confidence 4
No 99
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.9e-11 Score=96.79 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=73.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||||-++++.+... ...++|+|+++.+++.++++++..+..
T Consensus 164 ~~vlDvGcGSGILaIAa~kLG------------A~~v~g~DiDp~AV~aa~eNa~~N~v~-------------------- 211 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLG------------AKKVVGVDIDPQAVEAARENARLNGVE-------------------- 211 (300)
T ss_pred CEEEEecCChhHHHHHHHHcC------------CceEEEecCCHHHHHHHHHHHHHcCCc--------------------
Confidence 479999999999999987633 456999999999999999998766541
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc-HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
........+.... ...+.||+|+++. +.+ +..+..++++.+||||+++++-+-
T Consensus 212 --------------------~~~~~~~~~~~~~-~~~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 212 --------------------LLVQAKGFLLLEV-PENGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred --------------------hhhhcccccchhh-cccCcccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 0011111111111 2235799999976 333 457778999999999999997654
No 100
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.24 E-value=5.5e-11 Score=87.84 Aligned_cols=99 Identities=23% Similarity=0.214 Sum_probs=83.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+++|+|||+|+++..++... +..+++++|.++++++..+++.+..+.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~-----------p~~~v~AIe~~~~a~~~~~~N~~~fg~--------------------- 83 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAG-----------PSGRVIAIERDEEALELIERNAARFGV--------------------- 83 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhC-----------CCceEEEEecCHHHHHHHHHHHHHhCC---------------------
Confidence 368999999999999999544 589999999999999999999998886
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.++.++.++.-....++|.|++... ..++.+++.+...|||||+++.-
T Consensus 84 --------------------~n~~vv~g~Ap~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 84 --------------------DNLEVVEGDAPEALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred --------------------CcEEEEeccchHhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 6888888887664222237999988653 67788999999999999999873
No 101
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=3.6e-11 Score=96.54 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=71.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.++++.........
T Consensus 146 ~~VLDlGcGtG~~a~~la~-------------~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~------------------ 194 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLAL-------------EGAIVSASDISAAMVAEAERRAKEALAALP------------------ 194 (315)
T ss_pred CEEEEecCCCCHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHHHHhcccccc------------------
Confidence 3799999999999999987 367899999999999999998764321000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~ 153 (167)
...++.+...|++.+ +++||+|+|..+++++++ ...+++.+.+ +.++|.++
T Consensus 195 ------------------~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 195 ------------------PEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ------------------cccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 002456666676543 467999999988877765 3455666654 45555543
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=3.5e-11 Score=96.84 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=73.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++... ...+++++|+++.+++.|++++...+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~----------~~g~VvgVDis~~~l~~Ar~~l~~~g~--------------------- 130 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVRRLGI--------------------- 130 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 4799999999999999988763 235799999999999999998876554
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|........+.||+|++....... ...+.++|+|||.+++.
T Consensus 131 --------------------~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 131 --------------------ENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred --------------------CcEEEEeCChhhcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 35666666655443334569999886543332 33578899999998874
No 103
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=7.1e-11 Score=98.60 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=81.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... +.+++++|+++.+++.++++++..+. ++++..+|+.+++
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-----------~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-----------QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQW 308 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-----------CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhh
Confidence 4799999999999999998763 47899999999999999999987654 2456667766653
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+..+.||.+.+..+-.... .+ .. ..+..+....-|+- .......+++.+++++|||||++++++++
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G------~~-~~-~p~~~~~~~~~~l~------~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATG------VI-RR-HPDIKWLRRPEDIA------ALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred cccCCCCEEEECCCCCccc------cc-cc-CccccccCCHHHHH------HHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3445677666554432110 00 00 00000000000100 00123467899999999999999987753
No 104
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.22 E-value=3.2e-11 Score=90.42 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=68.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. ...++++|+++++++.++++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~------------~~~~~giD~s~~~i~~a~~~--------------------------- 55 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK------------QVRGYGIEIDQDGVLACVAR--------------------------- 55 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc------------CCcEEEEeCCHHHHHHHHHc---------------------------
Confidence 379999999999998887643 45689999999999888642
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-C-CCCccchhhHhhhhcccccccHHHHHHHHHHhcCC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp 148 (167)
++.+...+..+ . +..+++||+|+++.+++++++...+++++.+++++
T Consensus 56 ---------------------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 56 ---------------------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred ---------------------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 13344444433 2 24567899999999999999999999999887764
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.20 E-value=2.5e-11 Score=92.21 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=74.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..++.... ....++++|..+...+.|++++...+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg----------~~g~Vv~vE~~~~l~~~A~~~l~~~~~--------------------- 122 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVG----------PVGRVVSVERDPELAERARRNLARLGI--------------------- 122 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHS----------TTEEEEEEESBHHHHHHHHHHHHHHTT---------------------
T ss_pred CEEEEecCCCcHHHHHHHHhcC----------ccceEEEECccHHHHHHHHHHHHHhcc---------------------
Confidence 6899999999999999998775 355799999999999999999988775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|...-....+.||.|++......++ ..+.+.|++||+|++.
T Consensus 123 --------------------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 123 --------------------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp --------------------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred --------------------CceeEEEcchhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 567788887655434457799999977654333 2377889999999983
No 106
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.20 E-value=3.2e-11 Score=95.54 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.||...||++|.-++.++-.+.+.-+... ...+++|+|+|+.+++.|++-... ...++.+|
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~---~~~~I~atDIs~~aL~~Ar~G~Y~--------------~~~~r~~p~~ 179 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAP---GRWKVFASDIDTEVLEKARSGIYR--------------QEELKTLSPQ 179 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccC---CCcEEEEEECCHHHHHHHHhCCCC--------------HHHHhcCCHH
Confidence 37999999999888888776543211100 256899999999999999975421 11223333
Q ss_pred CCCCCCc--------eeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccc--cHHHHHHHHHHhcC
Q psy889 79 IESDSYS--------AYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLK 147 (167)
Q Consensus 79 ~~~~~fd--------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~Lk 147 (167)
+-..+|. .+.+...++ ..+.|...|+.+.+++ .+.||+|+|.+++.++. ...+++.++++.|+
T Consensus 180 ~~~ryF~~~~~~~~~~~~v~~~lr------~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~ 253 (287)
T PRK10611 180 QLQRYFMRGTGPHEGLVRVRQELA------NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK 253 (287)
T ss_pred HHHHHcccccCCCCceEEEChHHH------ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC
Confidence 2222232 234444444 5788888888764432 57899999999887774 47899999999999
Q ss_pred CCcEEEEE
Q psy889 148 PGGRFLCL 155 (167)
Q Consensus 148 pgG~l~~~ 155 (167)
|||+|++.
T Consensus 254 pgG~L~lG 261 (287)
T PRK10611 254 PDGLLFAG 261 (287)
T ss_pred CCcEEEEe
Confidence 99998773
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=1.2e-10 Score=91.43 Aligned_cols=130 Identities=21% Similarity=0.188 Sum_probs=83.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..++... +..+++++|+++.+++.+++++. .. ...++++..+|.... +.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~-----------~~~~v~~iDis~~~l~~a~~n~~-~~----~~~~i~~~~~d~~~~-~~ 172 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKER-----------PDAEVTAVDISPEALAVARRNAK-HG----LGARVEFLQGDWFEP-LP 172 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHH-hC----CCCcEEEEEccccCc-CC
Confidence 379999999999999999877 36789999999999999999886 11 124677777776432 23
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+.||.+++.++....... .... .++. .......+. .........+.+++++.++|+|||++++ +++
T Consensus 173 ~~~fD~Iv~npPy~~~~~~----~~~~---~~v~--~~ep~~al~-~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g 239 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADI----HLLQ---PEVR--DHEPHLALF-GGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG 239 (275)
T ss_pred CCceeEEEECCCcCCcchh----hhCC---chhh--hcCCchhhc-CCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC
Confidence 5678877777665321100 0000 0000 000011111 1122345567889999999999999998 443
No 108
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=1.4e-10 Score=97.19 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=82.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|||+|..+..+++... ...+++++|+++.+++.++++++..+. .++++..+|+..++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~----------~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLK----------NTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEK 316 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccch
Confidence 3799999999999999998763 367899999999999999999987664 23677777776653
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
++ +.||.+.+..+-.... .+ .-+ .+..+....-|+- ........++..++++|||||.+++.+++
T Consensus 317 ~~-~~fD~Vl~D~Pcsg~G------~~-~~~-p~~~~~~~~~~~~------~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 317 FA-EKFDKILVDAPCSGLG------VI-RRK-PDIKYNKTKEDIE------SLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred hc-ccCCEEEEcCCCCCCe------ee-ccC-cchhhcCCHHHHH------HHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 33 5677666654432110 00 000 0000000000110 00122356899999999999999986544
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.6e-11 Score=88.22 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||||||+|..+..+++.. .+++.+|..+...+.|++++...+.
T Consensus 74 ~~VLEIGtGsGY~aAvla~l~-------------~~V~siEr~~~L~~~A~~~L~~lg~--------------------- 119 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARLV-------------GRVVSIERIEELAEQARRNLETLGY--------------------- 119 (209)
T ss_pred CeEEEECCCchHHHHHHHHHh-------------CeEEEEEEcHHHHHHHHHHHHHcCC---------------------
Confidence 589999999999999998844 5899999999999999999998887
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++.+..+|...-......||.|++......+|. .+.+.||+||++++-.-
T Consensus 120 --------------------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 120 --------------------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred --------------------CceEEEECCcccCCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 5688888887664455688999998766444442 36778899999998443
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.19 E-value=1.2e-10 Score=96.13 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=86.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~ 80 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.++++.+..+. ++++..+|..+..+ .
T Consensus 254 rVLDLGcGSG~IaiaLA~~~-----------p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALER-----------PDAFVRASDISPPALETARKNAADLGA------RVEFAHGSWFDTDMPS 316 (423)
T ss_pred EEEEEeChhhHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEcchhcccccc
Confidence 79999999999999998765 367899999999999999999875432 68888899766433 2
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.+.||.+++++|.-.... .. ...+.... .....+. ..-......+++++++.++|+|||.+++ +.+.
T Consensus 317 ~~~FDLIVSNPPYI~~~e----~~---l~~~~v~~---EP~~AL~-gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~ 383 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGD----KH---LLQGDLRF---EPQIALT-DFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF 383 (423)
T ss_pred CCCccEEEECCCCCCcch----hh---hcchhhhc---CHHHHhh-CCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc
Confidence 457999988876532110 00 00000000 0111111 1112234467888999999999999876 5554
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.17 E-value=9.3e-11 Score=90.63 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=87.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
+|||+|||+|-+++.++.... ..+++++|+++.+.+.|+++.+...+ ..+++...+|+.+.. .
T Consensus 47 ~IlDlGaG~G~l~L~la~r~~-----------~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRTE-----------KAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKAL 111 (248)
T ss_pred eEEEecCCcCHHHHHHhccCC-----------CCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhcc
Confidence 799999999999999999763 58999999999999999999986554 568888888888864 5
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+||.+++.+|....... ...+ + .... ..+ ...-++...++.+.+.|||||.+.++-
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~------~~~~----~----~~~~--Ar~--e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSR------LNEN----P----LRAI--ARH--EITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cccccCEEEeCCCCCCCccc------cCcC----h----hhhh--hhh--hhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 55578888888777532111 0000 0 0000 100 012246778888999999999998843
No 112
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.17 E-value=9.4e-11 Score=90.62 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=80.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|+|+|..+..++++. +..+++..|. +..++.+++ .
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~-----------P~l~~~v~Dl-p~v~~~~~~------~---------------------- 142 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAY-----------PNLRATVFDL-PEVIEQAKE------A---------------------- 142 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHS-----------TTSEEEEEE--HHHHCCHHH------T----------------------
T ss_pred EEEeccCcchHHHHHHHHHC-----------CCCcceeecc-Hhhhhcccc------c----------------------
Confidence 69999999999999999988 4889999997 667787776 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCC--cEEEEEee
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPG--GRFLCLEF 157 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~Lkpg--G~l~~~~~ 157 (167)
.++.+...|+. -+++. +|+|+..+++|.+++ ...+|+++++.|+|| |+|++.|.
T Consensus 143 -------------------~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 143 -------------------DRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -------------------TTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred -------------------cccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 57888888886 34443 999999999998765 568899999999999 99999998
Q ss_pred cccCC
Q psy889 158 SHVNN 162 (167)
Q Consensus 158 ~~~~~ 162 (167)
--++.
T Consensus 201 ~~~~~ 205 (241)
T PF00891_consen 201 VLPDD 205 (241)
T ss_dssp EECSS
T ss_pred ccCCC
Confidence 76554
No 113
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.16 E-value=7.4e-11 Score=93.80 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=73.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||||-++++.+... ..+++++|+++.+++.|+++....+.
T Consensus 163 ~~vLDvG~GSGILaiaA~klG------------A~~v~a~DiDp~Av~~a~~N~~~N~~--------------------- 209 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLG------------AKKVVAIDIDPLAVEAARENAELNGV--------------------- 209 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTT------------BSEEEEEESSCHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEeCCcHHHHHHHHHHcC------------CCeEEEecCCHHHHHHHHHHHHHcCC---------------------
Confidence 489999999999999987743 45799999999999999999986665
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..++.+. ...+ .....||+|+++.. ..-+..++..+.++|+|||+|+++-+-..
T Consensus 210 -------------------~~~~~v~--~~~~--~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 210 -------------------EDRIEVS--LSED--LVEGKFDLVVANIL---ADVLLELAPDIASLLKPGGYLILSGILEE 263 (295)
T ss_dssp -------------------TTCEEES--CTSC--TCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred -------------------CeeEEEE--Eecc--cccccCCEEEECCC---HHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence 1233332 1111 12378999998753 23356777889999999999999876544
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.15 E-value=1.2e-10 Score=86.82 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=30.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAM 46 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 46 (167)
.+|||+|||+|.++..+++... ...+++++|+++.+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~----------~~~~v~~vDis~~~ 69 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVG----------GKGRVIAVDLQPMK 69 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhC----------CCceEEEEeccccc
Confidence 3799999999999999988763 25689999999854
No 115
>KOG1541|consensus
Probab=99.15 E-value=6.9e-11 Score=89.22 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=67.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||||||+|-.+..+.+ .+...+|+|+|+.|++.|.++--.
T Consensus 53 ~iLDIGCGsGLSg~vL~~-------------~Gh~wiGvDiSpsML~~a~~~e~e------------------------- 94 (270)
T KOG1541|consen 53 LILDIGCGSGLSGSVLSD-------------SGHQWIGVDISPSMLEQAVERELE------------------------- 94 (270)
T ss_pred EEEEeccCCCcchheecc-------------CCceEEeecCCHHHHHHHHHhhhh-------------------------
Confidence 489999999999877766 467788999999999999963211
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC-CCCCCccchhhHhhhhccccc-----------ccHHHHHHHHHHhcCCC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE-ELPIESDSYSAYTIAFGIRNV-----------TRIDKALSEAYRVLKPG 149 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~~-----------~~~~~~l~~~~~~Lkpg 149 (167)
.+++..|+. -+|+.+++||-+++...+.|+ +.+.++|..+|.+|++|
T Consensus 95 ---------------------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 95 ---------------------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred ---------------------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 223333442 356666666666654444332 22466788899999999
Q ss_pred cEEEEEe
Q psy889 150 GRFLCLE 156 (167)
Q Consensus 150 G~l~~~~ 156 (167)
++.++-.
T Consensus 154 ~raV~Qf 160 (270)
T KOG1541|consen 154 ARAVLQF 160 (270)
T ss_pred ceeEEEe
Confidence 9988744
No 116
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.15 E-value=1.5e-10 Score=93.51 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=72.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCC-CCcccccccccccCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP-NPRLRFLEANAEELPI 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~ 79 (167)
.+|||+|||-|+...-+... ...+++|+|++...++.|++|.......... ..+..
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~----------- 120 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKA------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD----------- 120 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHT------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-----------
T ss_pred CeEEEecCCCchhHHHHHhc------------CCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-----------
Confidence 47999999998887666553 2678999999999999999999443210000 00000
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCC------CCCCccchhhHhhhhccccc----ccHHHHHHHHHHhcCCC
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE------LPIESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPG 149 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~Lkpg 149 (167)
-...+...|... ++.....||+|.|.+.+|.. ...+.+|.++.+.|+||
T Consensus 121 ---------------------f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 121 ---------------------FIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp ---------------------CEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ---------------------chhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 112334443321 12223589999999888843 34678999999999999
Q ss_pred cEEEEEeec
Q psy889 150 GRFLCLEFS 158 (167)
Q Consensus 150 G~l~~~~~~ 158 (167)
|+|+.+...
T Consensus 180 G~FIgT~~d 188 (331)
T PF03291_consen 180 GYFIGTTPD 188 (331)
T ss_dssp EEEEEEEE-
T ss_pred CEEEEEecC
Confidence 999987643
No 117
>PTZ00146 fibrillarin; Provisional
Probab=99.14 E-value=3e-10 Score=89.89 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=67.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||+|||+|..+..+++.+. ....++++|+++.+.+...+.....
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG----------~~G~VyAVD~s~r~~~dLl~~ak~r----------------------- 180 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVG----------PEGVVYAVEFSHRSGRDLTNMAKKR----------------------- 180 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECcHHHHHHHHHHhhhc-----------------------
Confidence 5899999999999999999874 3568999999987665554443211
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC---CCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..|... +.....++|+|++... ...+.+.++.+++++|||||.|++
T Consensus 181 --------------------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 181 --------------------PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred --------------------CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEE
Confidence 134444444432 1112246899987653 222344556789999999999999
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.13 E-value=1.7e-10 Score=89.13 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=77.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+..++.... ..++++++|+++.+++.|+++++..+.
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~----------~~g~v~tiD~d~~~~~~A~~n~~~~gl--------------------- 118 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALP----------EDGRITAIDIDKEAYEVGLEFIKKAGV--------------------- 118 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999988764 367999999999999999999987765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+..++..+. + ...++||+|++-.. .+....++..+.+.|+|||.+++
T Consensus 119 -------------------~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 119 -------------------DHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred -------------------CCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 13566666655432 1 11357999876431 24456788999999999999887
No 119
>PRK04457 spermidine synthase; Provisional
Probab=99.11 E-value=2e-10 Score=90.20 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=73.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+++++++.+++.+..... .
T Consensus 69 ~vL~IG~G~G~l~~~l~~~~-----------p~~~v~~VEidp~vi~~A~~~f~~~~~----~----------------- 116 (262)
T PRK04457 69 HILQIGLGGGSLAKFIYTYL-----------PDTRQTAVEINPQVIAVARNHFELPEN----G----------------- 116 (262)
T ss_pred EEEEECCCHhHHHHHHHHhC-----------CCCeEEEEECCHHHHHHHHHHcCCCCC----C-----------------
Confidence 69999999999999998877 378899999999999999987642211 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcc-cccc---cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGI-RNVT---RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~-~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.++..|..+. ......||+|++...- ...+ ....+++++.++|+|||.+++-.
T Consensus 117 -------------------~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 117 -------------------ERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -------------------CceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 3455555554321 1122457777763210 1111 13688999999999999999854
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
++
T Consensus 178 ~~ 179 (262)
T PRK04457 178 WS 179 (262)
T ss_pred CC
Confidence 43
No 120
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.11 E-value=3.6e-11 Score=90.48 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=79.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.||...||++|.-++.++-.+.+..+... ....+++|+|+|+.+++.|++-.- ....++++|
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~--~~~~~I~atDi~~~~L~~Ar~G~Y--------------~~~~~~~~~~~ 96 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGAL--GWDFRILATDISPSALEKARAGIY--------------PERSLRGLPPA 96 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-T--T-SEEEEEEES-HHHHHHHHHTEE--------------EGGGGTTS-HH
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccC--CCceEEEEEECCHHHHHHHHhCCC--------------CHHHHhhhHHH
Confidence 37899999999887777665532100000 024689999999999999986442 222233443
Q ss_pred -----CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcE
Q psy889 79 -----IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 79 -----~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~ 151 (167)
|....-+.+.++..++ .++.|...|+.+.+...+.||+|+|.+++-.+.. .+++++.+++.|+|||+
T Consensus 97 ~~~ryf~~~~~~~~~v~~~lr------~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 97 YLRRYFTERDGGGYRVKPELR------KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp HHHHHEEEE-CCCTTE-HHHH------TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred HHHHhccccCCCceeEChHHc------CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence 2111112233444444 5789999888774445688999999999887654 58899999999999999
Q ss_pred EEEE
Q psy889 152 FLCL 155 (167)
Q Consensus 152 l~~~ 155 (167)
|++.
T Consensus 171 L~lG 174 (196)
T PF01739_consen 171 LFLG 174 (196)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 9983
No 121
>KOG3010|consensus
Probab=99.11 E-value=1.5e-10 Score=88.32 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=71.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||+|..++.++.++ .+++|+|+|++|+..+++..+..-.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-------------k~VIatD~s~~mL~~a~k~~~~~y~---------------------- 80 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-------------KEVIATDVSEAMLKVAKKHPPVTYC---------------------- 80 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-------------hhheeecCCHHHHHHhhcCCCcccc----------------------
Confidence 46899999998888888865 4599999999999999876532111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCc-EEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~ 154 (167)
.........++..+.-.+.+.|+|+|...+||+. ..++.++++|+||++| .+.+
T Consensus 81 ------------------~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 81 ------------------HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ------------------cCCccccccccccccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 0111222223333333378899999999888764 6788999999998877 5544
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.11 E-value=5.6e-10 Score=94.99 Aligned_cols=130 Identities=20% Similarity=0.167 Sum_probs=84.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... +..+++++|+|+.+++.|+++....+. .+++++..+|... ++..
T Consensus 141 ~VLDlG~GsG~iai~la~~~-----------p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~-~~~~ 204 (506)
T PRK01544 141 NILELGTGSGCIAISLLCEL-----------PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFE-NIEK 204 (506)
T ss_pred EEEEccCchhHHHHHHHHHC-----------CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhh-hCcC
Confidence 69999999999999998876 368899999999999999999876543 2367777777543 2334
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh-cccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
+.||.+++.++.-..... .....+ + ..|+-..+.. .-..+...+++++++.++|+|||.+++ +++.
T Consensus 205 ~~fDlIvsNPPYi~~~~~------~~l~~~-v----~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~ 271 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEK------SEMAIE-T----INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF 271 (506)
T ss_pred CCccEEEECCCCCCchhh------hhcCch-h----hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC
Confidence 578888877666321100 000000 0 0011111111 111234467788999999999999987 5543
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6e-10 Score=87.99 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=77.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||.|-++..+++.. +..+++-+|.|..+++.+++++...+.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~-----------p~~~vtmvDvn~~Av~~ar~Nl~~N~~---------------------- 207 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKS-----------PQAKLTLVDVNARAVESARKNLAANGV---------------------- 207 (300)
T ss_pred cEEEeCCCccHHHHHHHHhC-----------CCCeEEEEecCHHHHHHHHHhHHHcCC----------------------
Confidence 69999999999999999987 478999999999999999999976554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc-cc----HHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-TR----IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~----~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+..+...+..+ +.. ++||+|+|+=-+|.= .- ..+++.+..++|++||.|.++-
T Consensus 208 -------------------~~~~v~~s~~~~-~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 208 -------------------ENTEVWASNLYE-PVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred -------------------CccEEEEecccc-ccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 232333333322 222 289999998777632 11 3488999999999999999854
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.08 E-value=7.3e-10 Score=86.44 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=77.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-CC-C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP-I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-l~-~ 79 (167)
+|||+|||+|.++..++... .+.+++++|+|+.+++.+++++...+ .++..+|..+ ++ .
T Consensus 89 ~vLDlg~GsG~i~l~la~~~-----------~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAAL-----------DGIELHAADIDPAAVRCARRNLADAG--------GTVHEGDLYDALPTA 149 (251)
T ss_pred EEEEecCchHHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHHHHHcC--------CEEEEeechhhcchh
Confidence 69999999999999998876 36789999999999999999986432 2566677554 22 1
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhh-hcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+.||.+++.+|....... . ..+.....++.-... ..-......+.++..+.++|+|||++++.
T Consensus 150 ~~~~fDlVv~NPPy~~~~~~----~-------~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 150 LRGRVDILAANAPYVPTDAI----A-------LMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred cCCCEeEEEECCCCCCchhh----h-------cCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 12457777777665321100 0 000000001111111 11122334678888999999999999973
No 125
>PRK00811 spermidine synthase; Provisional
Probab=99.07 E-value=4.5e-10 Score=89.05 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=73.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||.|..+..++++. ...+++++|+++.+++.+++.+..........
T Consensus 79 ~VL~iG~G~G~~~~~~l~~~-----------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d----------------- 130 (283)
T PRK00811 79 RVLIIGGGDGGTLREVLKHP-----------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDD----------------- 130 (283)
T ss_pred EEEEEecCchHHHHHHHcCC-----------CCCEEEEEeCCHHHHHHHHHHhHHhccccccC-----------------
Confidence 79999999999999998764 25689999999999999999876432100011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccccc----HHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+...|.... ....+.||+|++...-..-+. ...+++.+++.|+|||.+++
T Consensus 131 -------------------~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 131 -------------------PRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred -------------------CceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 4556666655432 223456888877432221111 25678899999999999987
No 126
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.07 E-value=5.9e-10 Score=83.79 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=77.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||||||||.++.++++++ +..+..-.|.++......++.....+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-----------P~l~WqPSD~~~~~~~sI~a~~~~~~~---------------------- 74 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-----------PHLTWQPSDPDDNLRPSIRAWIAEAGL---------------------- 74 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-----------CCCEEcCCCCChHHHhhHHHHHHhcCC----------------------
Confidence 59999999999999999998 478889999999888777776655443
Q ss_pred CCCceeeeeeccccccCCCCce-EEeecccCCC--CC------CccchhhHhhhhccccc--ccHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRL-RFLEANAEEL--PI------ESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~-~~~~~d~~~~--~~------~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~LkpgG 150 (167)
.++ .-+..|.... +. ....||+|+|.+++|-. ...+.+|+.+.++|++||
T Consensus 75 -------------------~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 75 -------------------PNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG 135 (204)
T ss_pred -------------------cccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC
Confidence 111 1122233222 22 35689999999998854 457899999999999999
Q ss_pred EEEEE
Q psy889 151 RFLCL 155 (167)
Q Consensus 151 ~l~~~ 155 (167)
.|++.
T Consensus 136 ~L~~Y 140 (204)
T PF06080_consen 136 LLFLY 140 (204)
T ss_pred EEEEe
Confidence 99874
No 127
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.06 E-value=2.9e-10 Score=84.51 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|||.|.+...+.+. .+.+.+|+|++++.+..+.++
T Consensus 15 srVLDLGCGdG~LL~~L~~~------------k~v~g~GvEid~~~v~~cv~r--------------------------- 55 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE------------KQVDGYGVEIDPDNVAACVAR--------------------------- 55 (193)
T ss_pred CEEEecCCCchHHHHHHHHh------------cCCeEEEEecCHHHHHHHHHc---------------------------
Confidence 38999999999998877664 278899999999998888754
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC-C-CCCccchhhHhhhhcccccccHHHHHHHHHHhcC
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 147 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lk 147 (167)
.+.+++.|++. + .+++++||.|+++.++..+..++.+|.++.|+=|
T Consensus 56 ---------------------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 56 ---------------------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred ---------------------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 34566777654 3 4889999999999999999999999988877733
No 128
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.3e-09 Score=83.99 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=82.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+||+|.|.|+|.++..+++... +.++++..|+.++..+.|+++++..+.
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg----------~~G~v~tyE~r~d~~k~A~~Nl~~~~l--------------------- 144 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVG----------PEGHVTTYEIREDFAKTARENLSEFGL--------------------- 144 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhC----------CCceEEEEEecHHHHHHHHHHHHHhcc---------------------
Confidence 5899999999999999999886 478999999999999999999988765
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...|..+..... .||.|+. -++++..++..+++.|+|||.+++..
T Consensus 145 -------------------~d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 145 -------------------GDRVTLKLGDVREGIDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred -------------------ccceEEEecccccccccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 133666666665544433 7888866 37899999999999999999998744
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.4e-09 Score=84.81 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=78.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||||-++..++.+. +..+++++|+|+.+++.|++++...+. .++..+.+|... +...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-----------~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~~dlf~-~~~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-----------PDAEVIAVDISPDALALARENAERNGL-----VRVLVVQSDLFE-PLRG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-----------cCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEeeeccc-ccCC
Confidence 59999999999999999987 367999999999999999999987653 122222222111 0111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.||.++.++|.=... +....+ .........+.... ..+...++++.++.++|+|||.+++ +.+.
T Consensus 176 -~fDlIVsNPPYip~~-----------~~~~~~~~~~~EP~~Al~~g~-dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~ 240 (280)
T COG2890 176 -KFDLIVSNPPYIPAE-----------DPELLPEVVRYEPLLALVGGG-DGLEVYRRILGEAPDILKPGGVLIL-EIGL 240 (280)
T ss_pred -ceeEEEeCCCCCCCc-----------ccccChhhhccCHHHHHccCc-cHHHHHHHHHHhhHHHcCCCcEEEE-EECC
Confidence 566555555542100 000000 00011111222222 3455678899999999999998887 6553
No 130
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.03 E-value=3.7e-10 Score=85.45 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=74.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+.||.|||.|.+|..++-.. ..++-.+|..+.+++.|++.+.....
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~------------f~~VDlVEp~~~Fl~~a~~~l~~~~~--------------------- 103 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPV------------FDEVDLVEPVEKFLEQAKEYLGKDNP--------------------- 103 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-------------SEEEEEES-HHHHHHHHHHTCCGGC---------------------
T ss_pred ceEEecccccchhHHHHHHHh------------cCEeEEeccCHHHHHHHHHHhcccCC---------------------
Confidence 378999999999999886543 56788999999999999976643111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
....+....++++....+.||+|++.+++.++++ ...+|+++.+.|+|||.+++-|
T Consensus 104 --------------------~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 104 --------------------RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp --------------------CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 2245666667666555678999999999988876 6788999999999999999854
No 131
>PHA03411 putative methyltransferase; Provisional
Probab=98.99 E-value=2.2e-09 Score=84.25 Aligned_cols=117 Identities=9% Similarity=0.172 Sum_probs=79.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++... ...+++++|+++.+++.++++. ++++|..+|+.+... .
T Consensus 67 rVLDLGcGsGilsl~la~r~-----------~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~~-~ 124 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRC-----------KPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFES-N 124 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhC-----------CCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhcc-c
Confidence 79999999999999887754 2578999999999999998753 256788888887653 3
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCc--cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..||.++..++.........+- + ..+.. ..++.+ ...+.+.....+|+|+|.++++-.+
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~------~--~~~~GG~~g~~~l----------~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKD------V--FEYTGGEFEFKVM----------TLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred CCCcEEEEcCCccccCchhhhh------h--hhhccCccccccc----------cHHHHHhhhHheecCCceEEEEEec
Confidence 5788888887775432111100 0 11110 111221 1356778888999999988776433
No 132
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.99 E-value=9.4e-10 Score=90.96 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=72.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+. ...++++..+|+.... +
T Consensus 223 rVLDlfsgtG~~~l~aa~~------------ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMG------------GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTY 287 (396)
T ss_pred eEEEeccCCCHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHH
Confidence 7999999999998876542 145899999999999999999876554 1124566666654421 1
Q ss_pred --CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 80 --ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 80 --~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.||.+.+.+|... .. .-.+. ........++..+.++|+|||.++.+.+
T Consensus 288 ~~~~~~fDlVilDPP~f~-------------------~~--k~~l~------~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFV-------------------EN--KSQLM------GACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HhcCCCCCEEEECCCCCC-------------------CC--hHHHH------HHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2334554444433210 00 00000 0122345666778999999999998665
Q ss_pred c
Q psy889 158 S 158 (167)
Q Consensus 158 ~ 158 (167)
+
T Consensus 341 s 341 (396)
T PRK15128 341 S 341 (396)
T ss_pred C
Confidence 4
No 133
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.99 E-value=4.1e-09 Score=80.83 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=83.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|||..|||.|..+..+++ .+.+++|+|+|+..++.+.+.......
T Consensus 46 rvLvPgCGkg~D~~~LA~-------------~G~~V~GvDlS~~Ai~~~~~e~~~~~~---------------------- 90 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLS-------------KGVKVIGIELSEKAVLSFFSQNTINYE---------------------- 90 (226)
T ss_pred eEEEeCCCChHHHHHHHh-------------CCCcEEEEecCHHHHHHHHHHcCCCcc----------------------
Confidence 899999999999999988 478899999999999998764311000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+..........+.++.+.++|+.+++.. .+.||+|+-...++.++. -.+.++.+.++|+|||.++++.
T Consensus 91 -------~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 91 -------VIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred -------eecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0000000001124678888888776532 257999988777776654 4677899999999999999988
Q ss_pred ecc
Q psy889 157 FSH 159 (167)
Q Consensus 157 ~~~ 159 (167)
+..
T Consensus 164 ~~~ 166 (226)
T PRK13256 164 MEH 166 (226)
T ss_pred Eec
Confidence 754
No 134
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.98 E-value=1.8e-09 Score=81.24 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=73.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+||+|||.|.+...++... ++..++|+|+....+..+.+++...+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-----------Pd~n~iGiE~~~~~v~~a~~~~~~~~l---------------------- 66 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-----------PDINFIGIEIRKKRVAKALRKAEKRGL---------------------- 66 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-----------TTSEEEEEES-HHHHHHHHHHHHHHTT----------------------
T ss_pred eEEEecCCCCHHHHHHHHHC-----------CCCCEEEEecchHHHHHHHHHHHhhcc----------------------
Confidence 47999999999999999977 488999999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC---CCCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG 150 (167)
.++.++..|...+ -+.++++|.|...+---|.+. -...+..+.++|+|||
T Consensus 67 -------------------~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 67 -------------------KNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGG 127 (195)
T ss_dssp -------------------SSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred -------------------cceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence 5677777666542 133456666655443222221 2467889999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.+.+.+
T Consensus 128 ~l~~~T 133 (195)
T PF02390_consen 128 ELYFAT 133 (195)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998854
No 135
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.97 E-value=1.3e-09 Score=84.32 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=71.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|+|.|.++..++..+ .+++++|.|+.|....++ .+.
T Consensus 97 ~lLDlGAGdG~VT~~l~~~f-------------~~v~aTE~S~~Mr~rL~~----kg~---------------------- 137 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPLF-------------KEVYATEASPPMRWRLSK----KGF---------------------- 137 (265)
T ss_pred ceEEecCCCcHHHHHHHhhc-------------ceEEeecCCHHHHHHHHh----CCC----------------------
Confidence 68999999999999998865 559999999999655543 222
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++..+ ++...+..||+|.|.+++..-..+..+|+++++.|+|+|++++
T Consensus 138 ----------------------~vl~~~--~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 138 ----------------------TVLDID--DWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ----------------------eEEehh--hhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 222211 1222345799999999999888999999999999999999997
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=1.7e-09 Score=79.44 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=36.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.
T Consensus 16 ~vLEiG~G~G~lt~~l~~~-------------~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 16 TVLEIGPGKGALTEELLER-------------AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred EEEEECCCccHHHHHHHhc-------------CCeEEEEECCHHHHHHHHHHhc
Confidence 7999999999999999883 4679999999999999998874
No 137
>KOG1975|consensus
Probab=98.96 E-value=1.4e-09 Score=86.26 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=77.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
-++|+|||-|+-.+.+-.+. ..+++|+|++..+++.|++|++....- ++.
T Consensus 120 ~~~~LgCGKGGDLlKw~kAg------------I~~~igiDIAevSI~qa~~RYrdm~~r------------------~~~ 169 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAG------------IGEYIGIDIAEVSINQARKRYRDMKNR------------------FKK 169 (389)
T ss_pred ccceeccCCcccHhHhhhhc------------ccceEeeehhhccHHHHHHHHHHHHhh------------------hhc
Confidence 37899999999977765543 568999999999999999999865430 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC------CCCCCccchhhHhhhhcccc-c---ccHHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE------ELPIESDSYSAYTIAFGIRN-V---TRIDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~------~~~~~~~~~D~v~~~~~~~~-~---~~~~~~l~~~~~~LkpgG~ 151 (167)
-. -...|..+|-. -++..+..||+|-|.+++|. + ...+.++.++.+.|+|||+
T Consensus 170 ~~-----------------f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 170 FI-----------------FTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred cc-----------------ceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 00 11344444432 12344555999999998883 2 3467889999999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
|+-+-
T Consensus 233 FIgTi 237 (389)
T KOG1975|consen 233 FIGTI 237 (389)
T ss_pred EEEec
Confidence 98743
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.95 E-value=1.8e-09 Score=95.25 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=75.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-CCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~ 80 (167)
+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...+. ...++++..+|..+. .-.
T Consensus 541 rVLDlf~gtG~~sl~aa~~G------------a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALGG------------AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred eEEEcCCCCCHHHHHHHHCC------------CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHc
Confidence 79999999999999998732 34699999999999999999976554 113566676765442 111
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.+.||.+++.+|.... .. ..+ ..+....+...++..+.++|+|||.+++...
T Consensus 606 ~~~fDlIilDPP~f~~-------------------~~-~~~-----~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 REQFDLIFIDPPTFSN-------------------SK-RME-----DSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCcCEEEECCCCCCC-------------------CC-ccc-----hhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3455555544333210 00 000 0011123456778889999999999987543
No 139
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.93 E-value=5.5e-10 Score=84.88 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=76.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||||-.+-++... ..+++|+|+|..|++.|.++-- .
T Consensus 128 ~~lDLGCGTGL~G~~lR~~-------------a~~ltGvDiS~nMl~kA~eKg~---Y---------------------- 169 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDM-------------ADRLTGVDISENMLAKAHEKGL---Y---------------------- 169 (287)
T ss_pred eeeecccCcCcccHhHHHH-------------HhhccCCchhHHHHHHHHhccc---h----------------------
Confidence 7999999999999998774 4679999999999999987531 0
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.. +.+++... ++ .....||+|....++..+-.+..+|.-+...|+|||.|.|+.-.-
T Consensus 170 -------------------D~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 170 -------------------DT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred -------------------HH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 00 01111110 11 234569999999999999999999999999999999999976544
Q ss_pred cC
Q psy889 160 VN 161 (167)
Q Consensus 160 ~~ 161 (167)
++
T Consensus 229 ~~ 230 (287)
T COG4976 229 PD 230 (287)
T ss_pred CC
Confidence 43
No 140
>KOG2940|consensus
Probab=98.92 E-value=1.8e-09 Score=82.21 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=85.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+||+.|.+..++.... -..++-+|.|-.|++.++.. +.-
T Consensus 75 ~a~diGcs~G~v~rhl~~e~------------vekli~~DtS~~M~~s~~~~-qdp------------------------ 117 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEG------------VEKLIMMDTSYDMIKSCRDA-QDP------------------------ 117 (325)
T ss_pred ceeecccchhhhhHHHHhcc------------hhheeeeecchHHHHHhhcc-CCC------------------------
Confidence 47899999999999987643 45799999999999988742 111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.-.+.+...|.+.+++.+.++|+|+.+..+||+.++...+-++...|||+|.|+-.-++
T Consensus 118 ------------------~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 118 ------------------SIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred ------------------ceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhc
Confidence 13466777888889999999999999999999999999999999999999999865444
No 141
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.92 E-value=4.2e-09 Score=82.66 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=91.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccc-ccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~l~- 78 (167)
.||.-.||++|.-++.++-.+.+..+. -......++|+|+|..+++.|+.-.-. .... +++|
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~--~~~~~~~I~AtDId~~~L~~A~~G~Y~--------------~~~~~~~~~~ 161 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGK--LAGFRVKILATDIDLSVLEKARAGIYP--------------SRELLRGLPP 161 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhcc--ccCCceEEEEEECCHHHHHHHhcCCCC--------------hhHhhccCCH
Confidence 378999999998888877665432221 011357899999999999999864422 0111 3333
Q ss_pred -CCCCCCc-----eeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCc
Q psy889 79 -IESDSYS-----AYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG 150 (167)
Q Consensus 79 -~~~~~fd-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG 150 (167)
.-..+|+ .+.++..++ ..+.|...|+..-++..+.||+|+|.+++-.+. ...+++.+.+..|+|||
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir------~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELR------KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHh------cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 1122222 244444443 578888888766554668899999999987664 46889999999999999
Q ss_pred EEEEE
Q psy889 151 RFLCL 155 (167)
Q Consensus 151 ~l~~~ 155 (167)
+|++.
T Consensus 236 ~LflG 240 (268)
T COG1352 236 LLFLG 240 (268)
T ss_pred EEEEc
Confidence 99984
No 142
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.91 E-value=6.3e-09 Score=80.83 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=75.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
++|||.|.|+|.++..+++.+. +.++++..|+.++..+.|+++++..+.
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v~----------p~G~v~t~E~~~~~~~~A~~n~~~~gl--------------------- 90 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAVG----------PTGHVYTYEFREDRAEKARKNFERHGL--------------------- 90 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHTTC---------------------
T ss_pred CEEEEecCCcHHHHHHHHHHhC----------CCeEEEccccCHHHHHHHHHHHHHcCC---------------------
Confidence 5899999999999999999986 578999999999999999999998775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhcccccccHHHHHHHHHHhc-CCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL-KPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 156 (167)
..++.+...|...-.+. +..+|.|+. -++++..++..+.+.| ++||++++..
T Consensus 91 -------------------~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 91 -------------------DDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp -------------------CTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred -------------------CCCceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 13556655555432221 245777654 3678888899999999 8999987743
No 143
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.91 E-value=4e-09 Score=83.93 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=67.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
.++|.+||.|+++..+++.+. ...+++|+|.++.+++.+++++.. ..++++..+++.++. .
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~----------~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLG----------PKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCC----------CCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHHHHHHHH
Confidence 689999999999999999873 357899999999999999988743 247899999998875 2
Q ss_pred CC--CCCceeeeeeccccccC
Q psy889 80 ES--DSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 80 ~~--~~fd~~~~~~~~~~~~~ 98 (167)
+. ..+|.+...+|.+.+..
T Consensus 85 ~~~~~~vDgIl~DLGvSs~Ql 105 (296)
T PRK00050 85 AEGLGKVDGILLDLGVSSPQL 105 (296)
T ss_pred HcCCCccCEEEECCCcccccc
Confidence 22 27999999999998863
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.91 E-value=4.6e-09 Score=82.74 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=71.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||+|.++..++++. ...+++++|+++.+++.+++.+..... ...
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~-----------~~~~v~~veid~~vi~~a~~~~~~~~~-~~~------------------ 124 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHK-----------SVEKATLVDIDEKVIELSKKFLPSLAG-SYD------------------ 124 (270)
T ss_pred EEEEEcCCchHHHHHHHhCC-----------CcceEEEEeCCHHHHHHHHHHhHhhcc-ccc------------------
Confidence 79999999999999888754 256899999999999999987653221 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhccccc--cc--HHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNV--TR--IDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~--~~--~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..++.+...|... +......||+|++......- .. ...+++.+.+.|+|||.+++.
T Consensus 125 ------------------~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 125 ------------------DPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ------------------CCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1344444444322 11123568888775432111 11 357788999999999999984
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.89 E-value=4.2e-09 Score=79.83 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=78.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+++|..+..+++.+. .+++++.+|.++...+.|++.++..+.
T Consensus 48 ~vLEIGt~~GySal~la~~l~----------~~g~i~tiE~~~~~~~~A~~~~~~ag~---------------------- 95 (205)
T PF01596_consen 48 RVLEIGTFTGYSALWLAEALP----------EDGKITTIEIDPERAEIARENFRKAGL---------------------- 95 (205)
T ss_dssp EEEEESTTTSHHHHHHHHTST----------TTSEEEEEESSHHHHHHHHHHHHHTTG----------------------
T ss_pred eEEEeccccccHHHHHHHhhc----------ccceEEEecCcHHHHHHHHHHHHhcCC----------------------
Confidence 799999999999999999875 478999999999999999999987765
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++.++..++ + ...+.||+|++-. ...+....+..+.+.|+|||.+++
T Consensus 96 ------------------~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 96 ------------------DDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp ------------------GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------CCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc---cccchhhHHHHHhhhccCCeEEEE
Confidence 14677777765432 1 1135799997743 234566788888999999999988
No 146
>PLN02476 O-methyltransferase
Probab=98.89 E-value=8.7e-09 Score=81.28 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=77.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+++|..+..++..+. ..++++.+|.+++..+.|+++++..+.
T Consensus 121 ~VLEIGT~tGySal~lA~al~----------~~G~V~TiE~d~e~~~~Ar~n~~~aGl---------------------- 168 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLP----------ESGCLVACERDSNSLEVAKRYYELAGV---------------------- 168 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC----------------------
Confidence 799999999999999998774 367899999999999999999988776
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-----CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.+..++..+. + ...++||+|+.-. ........+..+.+.|+|||.+++
T Consensus 169 ------------------~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 169 ------------------SHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred ------------------CCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 13566666655332 1 1135789887632 234567788899999999999987
No 147
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.88 E-value=1.4e-08 Score=85.59 Aligned_cols=126 Identities=10% Similarity=0.118 Sum_probs=76.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~ 79 (167)
++|||+|||.|+-|.+++..+. ..+.+++.|+++.-+...++++++.+. .++.....|...+. .
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~----------~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMN----------NQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAA 179 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhh
Confidence 4799999999999999999885 357899999999999999999998876 12333334433331 1
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh---hhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.||.+++.-+=+... .+ ....|.... ..+.....-..++|..++++|||||+|++++
T Consensus 180 ~~~~fD~ILvDaPCSG~G------~~-----------rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 180 LPETFDAILLDAPCSGEG------TV-----------RKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred chhhcCeEEEcCCCCCCc------cc-----------ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 122344333222211100 00 000011000 0000011234678899999999999999977
Q ss_pred ec
Q psy889 157 FS 158 (167)
Q Consensus 157 ~~ 158 (167)
++
T Consensus 243 CT 244 (470)
T PRK11933 243 CT 244 (470)
T ss_pred CC
Confidence 66
No 148
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.85 E-value=8.2e-09 Score=78.67 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=80.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|.+.|..+..++..+. ..++++.+|+++++.+.|+++++..+.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~----------~~g~l~tiE~~~e~~~~A~~n~~~ag~--------------------- 109 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALP----------DDGRLTTIERDEERAEIARENLAEAGV--------------------- 109 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCC----------CCCeEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 3799999999999999999884 367999999999999999999998876
Q ss_pred CCCCceeeeeeccccccCCCCceEEee-cccCCC-C-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLE-ANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~-~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.... +|..+. . ...++||+|++-. ...+-...|..+.+.|+|||.+++
T Consensus 110 -------------------~~~i~~~~~gdal~~l~~~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 110 -------------------DDRIELLLGGDALDVLSRLLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred -------------------cceEEEEecCcHHHHHHhccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 13455555 343322 1 3468899998743 244567889999999999999987
No 149
>PLN02366 spermidine synthase
Probab=98.85 E-value=1e-08 Score=82.23 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=72.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||.|..+..++++- ...+++.+|+++.+++.+++.+..... ....
T Consensus 94 rVLiIGgG~G~~~rellk~~-----------~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~d----------------- 144 (308)
T PLN02366 94 KVLVVGGGDGGVLREIARHS-----------SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDD----------------- 144 (308)
T ss_pred eEEEEcCCccHHHHHHHhCC-----------CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCC-----------------
Confidence 79999999999999998763 256899999999999999998754321 0111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-C-CCccchhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..|.... . ...+.||+|++-..-..-+ ....+++.+++.|+|||.++.
T Consensus 145 -------------------pRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 145 -------------------PRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred -------------------CceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 4566666664322 1 1235688887743221111 135678899999999999976
No 150
>KOG2904|consensus
Probab=98.84 E-value=1.9e-08 Score=78.36 Aligned_cols=137 Identities=20% Similarity=0.149 Sum_probs=77.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccc----ccc-ccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL----EAN-AEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~d-~~~ 76 (167)
.|||+|||+|-++..++.-+ +..+++++|.|++++..|.++..+... +++++-. ..| ..+
T Consensus 151 ~ildlgtGSGaIslsll~~L-----------~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGL-----------PQCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVIHNIMESDASDE 215 (328)
T ss_pred eEEEecCCccHHHHHHHhcC-----------CCceEEEEeccHHHHHHHHHHHHHHhh----cCceEEEecccccccccc
Confidence 48999999999999999877 478999999999999999999987665 2222222 111 111
Q ss_pred CCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 77 LPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.+......|..+.+++.=...+ ...+.......+.....+ ...........++.-+-|+|+|||.+.+-.
T Consensus 216 ~~l~~~~~dllvsNPPYI~~dD-~~~l~~eV~~yEp~lALd---------Gg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 216 HPLLEGKIDLLVSNPPYIRKDD-NRQLKPEVRLYEPKLALD---------GGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccCceeEEecCCCcccccc-hhhcCchheecCchhhhc---------cccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 2344455555555544421111 000000000000000000 011122233445667889999999999844
Q ss_pred ecccCCc
Q psy889 157 FSHVNNS 163 (167)
Q Consensus 157 ~~~~~~~ 163 (167)
...++++
T Consensus 286 ~~~~~~~ 292 (328)
T KOG2904|consen 286 VERKEHS 292 (328)
T ss_pred cccccCc
Confidence 4344443
No 151
>PLN02672 methionine S-methyltransferase
Probab=98.82 E-value=2.3e-08 Score=90.92 Aligned_cols=141 Identities=16% Similarity=0.026 Sum_probs=88.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCC-----------CCCCccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-----------VPNPRLRFL 70 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~ 70 (167)
+|||+|||+|.++..++.+.. ..+++++|+|+.+++.|++++...+... ....++++.
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~-----------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWL-----------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 799999999999999998773 5789999999999999999997543210 112478999
Q ss_pred ccccccCCCC-CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccc--hh--hHhhhhc----ccccccHHHHHHH
Q psy889 71 EANAEELPIE-SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDS--YS--AYTIAFG----IRNVTRIDKALSE 141 (167)
Q Consensus 71 ~~d~~~l~~~-~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~D--~v~~~~~----~~~~~~~~~~l~~ 141 (167)
.+|.....-. ...||.++..+|.=.... ...+.....+ ..+.. |+ -...... -..+...++++.+
T Consensus 190 ~sDl~~~~~~~~~~fDlIVSNPPYI~~~e----~~~l~~eV~~--~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~ 263 (1082)
T PLN02672 190 ESDLLGYCRDNNIELDRIVGCIPQILNPN----PEAMSKLVTE--NASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE 263 (1082)
T ss_pred ECchhhhccccCCceEEEEECCCcCCCcc----hhhcChhhhh--ccccccccccCccccccCCCCCCcHHHHHHHHHHH
Confidence 9997654322 235888888776522110 0000000000 00000 00 0111111 1234456889999
Q ss_pred HHHhcCCCcEEEEEeeccc
Q psy889 142 AYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 142 ~~~~LkpgG~l~~~~~~~~ 160 (167)
+.++|+|||.+++ |++..
T Consensus 264 a~~~L~pgG~l~l-EiG~~ 281 (1082)
T PLN02672 264 GISVIKPMGIMIF-NMGGR 281 (1082)
T ss_pred HHHhccCCCEEEE-EECcc
Confidence 9999999999887 77654
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.81 E-value=2.1e-08 Score=84.23 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=40.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.|++++...+.
T Consensus 299 ~~VLDlgcGtG~~sl~la~~-------------~~~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQ-------------AAEVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred CEEEEEeccCCHHHHHHHHh-------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 37999999999999999874 46799999999999999999876554
No 153
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.80 E-value=2.1e-08 Score=76.68 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=78.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|||..|||.|.....+++ .+.+++|+|+|+.+++.+.+........ ..
T Consensus 40 rvLvPgCG~g~D~~~La~-------------~G~~VvGvDls~~Ai~~~~~e~~~~~~~--------------~~----- 87 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAE-------------QGHDVVGVDLSPTAIEQAFEENNLEPTV--------------TS----- 87 (218)
T ss_dssp EEEETTTTTSCHHHHHHH-------------TTEEEEEEES-HHHHHHHHHHCTTEEEC--------------TT-----
T ss_pred eEEEeCCCChHHHHHHHH-------------CCCeEEEEecCHHHHHHHHHHhccCCCc--------------cc-----
Confidence 799999999999999988 4778999999999999986443211100 00
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC-ccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
...... ....++.+.++|.-.++.. .+.||+|+-...++.++ .-.+..+.+.++|+|||.++++.+.
T Consensus 88 --~~~~~~--------~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 88 --VGGFKR--------YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp --CTTEEE--------ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred --ccceee--------ecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 000000 1125788999998776533 35799998766666553 3467789999999999995555554
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
.+
T Consensus 158 ~~ 159 (218)
T PF05724_consen 158 YP 159 (218)
T ss_dssp S-
T ss_pred cC
Confidence 33
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.79 E-value=1.8e-08 Score=81.06 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=40.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|||+|||+|.++..++. .+.+++|+|+++.+++.|+++++..+.
T Consensus 176 ~VLDl~cG~G~~sl~la~-------------~~~~V~gvD~s~~av~~A~~n~~~~~l 220 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCAT-------------PGMQLTGIEISAEAIACAKQSAAELGL 220 (315)
T ss_pred EEEEccCCCCHHHHHHHh-------------cCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 799999999999999987 357899999999999999999876654
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=98.79 E-value=1.9e-08 Score=77.44 Aligned_cols=75 Identities=8% Similarity=0.128 Sum_probs=59.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..++.++... ...+++++|+++.+++.|+++.. +.+|..+|+...++ .
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~--------~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-~ 112 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYA--------KPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-D 112 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccC--------CCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-c
Confidence 79999999999999998865200 24689999999999999997643 35677888877665 4
Q ss_pred CCCceeeeeecccc
Q psy889 82 DSYSAYTIAFGIRN 95 (167)
Q Consensus 82 ~~fd~~~~~~~~~~ 95 (167)
..||.++..+|...
T Consensus 113 ~~FDlIIsNPPY~~ 126 (241)
T PHA03412 113 TLFDMAISNPPFGK 126 (241)
T ss_pred CCccEEEECCCCCC
Confidence 58998888888864
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=98.78 E-value=1.4e-08 Score=82.71 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=70.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||++|||.|..+..++++. ...+++++|+++++++.|++...-..+ ..
T Consensus 153 rVLIIGgGdG~tlrelLk~~-----------~v~~It~VEIDpeVIelAr~~~~L~~~--------------------~~ 201 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYE-----------TVLHVDLVDLDGSMINMARNVPELVSL--------------------NK 201 (374)
T ss_pred EEEEECCCHHHHHHHHHhcC-----------CCCeEEEEeCCHHHHHHHHhccccchh--------------------cc
Confidence 79999999999988888754 357899999999999999962110000 00
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhcccc---cc--cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN---VT--RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~---~~--~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.|+ ..++.+...|... +......||+|++...-.. .. ....+++.+++.|+|||.+++.
T Consensus 202 ~~~~--------------DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 202 SAFF--------------DNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccCC--------------CCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 0000 1455665555543 2233456888877532110 01 1256788999999999998874
No 157
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=1.5e-08 Score=86.66 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=70.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH--HhcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA--RDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
+|||+|||+|..+..++++- ...+++++|+++++++.++++. ..........
T Consensus 300 rVL~IG~G~G~~~~~ll~~~-----------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d--------------- 353 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYP-----------DVEQVTLVDLDPAMTELARTSPALRALNGGALDD--------------- 353 (521)
T ss_pred eEEEEcCCccHHHHHHHhCC-----------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCC---------------
Confidence 79999999999999998743 2378999999999999999832 2111100011
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhccccccc-----HHHHHHHHHHhcCCCcEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~ 153 (167)
++++++..|..+. ...+++||+|++.......+. .+.+++.+++.|+|||.++
T Consensus 354 ---------------------prv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 354 ---------------------PRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred ---------------------CceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 3455555554432 222356788877543222221 2457889999999999998
Q ss_pred EE
Q psy889 154 CL 155 (167)
Q Consensus 154 ~~ 155 (167)
+.
T Consensus 413 ~~ 414 (521)
T PRK03612 413 VQ 414 (521)
T ss_pred Ee
Confidence 74
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.77 E-value=2.6e-08 Score=73.54 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=68.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|-.++.++.... ..+++.+|.++ .++..+.+++....
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~-----------~~~Vv~TD~~~-~l~~l~~Ni~~N~~--------------------- 93 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFG-----------AARVVLTDYNE-VLELLRRNIELNGS--------------------- 93 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T------------SEEEEEE-S--HHHHHHHHHHTT-----------------------
T ss_pred ceEEEECCccchhHHHHHhccC-----------CceEEEeccch-hhHHHHHHHHhccc---------------------
Confidence 4799999999999999888642 67899999999 99999988864321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
....++.+...+-.+. ......||+|+.+.++........+++.+.+.|+++|.+++..
T Consensus 94 -----------------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 94 -----------------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -----------------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred -----------------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 0013455555543221 1234579999999998888888999999999999998866644
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.76 E-value=2.9e-08 Score=76.27 Aligned_cols=103 Identities=19% Similarity=0.121 Sum_probs=76.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+||||||.|.+...+|+.. +...++|+|+....+..+.+++...+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~n-----------P~~nfiGiEi~~~~v~~~l~k~~~~~l---------------------- 97 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKN-----------PEKNFLGIEIRVPGVAKALKKIKELGL---------------------- 97 (227)
T ss_pred EEEEECCCCCHHHHHHHHHC-----------CCCCEEEEEEehHHHHHHHHHHHHcCC----------------------
Confidence 58999999999999999987 477899999999999999999988775
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC---CCCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG 150 (167)
.++.+.+.|+..+ -.++++.|-|..++---|.+. ....++.+.++|+|||
T Consensus 98 -------------------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG 158 (227)
T COG0220 98 -------------------KNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGG 158 (227)
T ss_pred -------------------CcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCC
Confidence 3555555554432 233346666655443222221 2466789999999999
Q ss_pred EEEEEe
Q psy889 151 RFLCLE 156 (167)
Q Consensus 151 ~l~~~~ 156 (167)
.|.+.+
T Consensus 159 ~l~~aT 164 (227)
T COG0220 159 VLHFAT 164 (227)
T ss_pred EEEEEe
Confidence 998854
No 160
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.75 E-value=5.4e-08 Score=73.43 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=38.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|||+|||+|.++..++... ..+++++|.++.+++.++++++..+.
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~------------a~~V~~vE~~~~a~~~a~~Nl~~~~~ 101 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRY------------AAGATLLEMDRAVAQQLIKNLATLKA 101 (199)
T ss_pred EEEEcCCCccHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 79999999999998755432 46899999999999999999876654
No 161
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.74 E-value=2.7e-08 Score=77.40 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=77.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|+++|..+..++..+. +.++++.+|.+++..+.|++.+...+.
T Consensus 81 k~iLEiGT~~GySal~la~al~----------~~g~v~tiE~~~~~~~~Ar~~~~~ag~--------------------- 129 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALP----------EDGKILAMDINRENYELGLPVIQKAGV--------------------- 129 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHCCC---------------------
Confidence 3799999999999999998774 478999999999999999999987775
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC-CC------CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PI------ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.++.++..+. +- ..++||+|++-. ........+..+.+.|+|||.++
T Consensus 130 -------------------~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa---dK~~Y~~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 130 -------------------AHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDA---DKDNYINYHKRLIDLVKVGGVIG 187 (247)
T ss_pred -------------------CCceEEEeccHHHHHHHHHhccccCCcccEEEecC---CHHHhHHHHHHHHHhcCCCeEEE
Confidence 14566666654332 10 135799987743 13334567788899999999988
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 188 ~ 188 (247)
T PLN02589 188 Y 188 (247)
T ss_pred E
Confidence 7
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.69 E-value=5.7e-08 Score=78.22 Aligned_cols=111 Identities=22% Similarity=0.193 Sum_probs=75.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccc-ccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~ 80 (167)
.|||.-||||++.+...- -+++++|+|++..|++-++.+++..+. ........ |+..+||+
T Consensus 200 ~vlDPFcGTGgiLiEagl-------------~G~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 200 LVLDPFCGTGGILIEAGL-------------MGARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVLDATNLPLR 261 (347)
T ss_pred EeecCcCCccHHHHhhhh-------------cCceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEecccccCCCC
Confidence 689999999999877643 389999999999999999999987653 12222333 66666666
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++||.+.+.+|. ++..-.... . -..-...+|..+.++|++||++++...
T Consensus 262 ~~~vdaIatDPPY-------Grst~~~~~---------~-----------l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPY-------GRSTKIKGE---------G-----------LDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCC-------Ccccccccc---------c-----------HHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6666666655554 111100000 0 011246788999999999999988553
No 163
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.60 E-value=5.5e-08 Score=73.26 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=37.2
Q ss_pred EeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 105 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 105 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+...|+.++|..+++.|++++...+. =++....+.|++|+|||||.|.+.|..
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEec
Confidence 45678889999999999998755543 245778999999999999999998865
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.57 E-value=1.7e-07 Score=78.39 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=53.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-C--
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-- 78 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...+. .++++..+|+.+. +
T Consensus 295 ~vLDl~cG~G~~sl~la~~-------------~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQ-------------AKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLETVLPKQ 356 (431)
T ss_pred EEEEcCCCcCHHHHHHHHh-------------CCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHHHHHHH
Confidence 7999999999999999874 45799999999999999999876543 2466666665542 1
Q ss_pred -CCCCCCceeeeeec
Q psy889 79 -IESDSYSAYTIAFG 92 (167)
Q Consensus 79 -~~~~~fd~~~~~~~ 92 (167)
+....||.+.+.++
T Consensus 357 ~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 357 PWAGQIPDVLLLDPP 371 (431)
T ss_pred HhcCCCCCEEEECcC
Confidence 22344555554444
No 165
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.56 E-value=2.1e-07 Score=70.19 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=69.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+.||.|.++..++++. ...+++++|+++.+++..+++++....
T Consensus 104 ~VlD~faGIG~f~l~~ak~~-----------~~~~V~A~d~Np~a~~~L~~Ni~lNkv---------------------- 150 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHG-----------KAKRVYAVDLNPDAVEYLKENIRLNKV---------------------- 150 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT------------SSEEEEEES-HHHHHHHHHHHHHTT-----------------------
T ss_pred EEEEccCCccHHHHHHhhhc-----------CccEEEEecCCHHHHHHHHHHHHHcCC----------------------
Confidence 69999999999999999865 377899999999999999999976554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.....|...+.. ...+|-|++.. .......+..+.+.+++||.+.+
T Consensus 151 ------------------~~~i~~~~~D~~~~~~-~~~~drvim~l----p~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 151 ------------------ENRIEVINGDAREFLP-EGKFDRVIMNL----PESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ------------------TTTEEEEES-GGG----TT-EEEEEE------TSSGGGGHHHHHHHEEEEEEEEE
T ss_pred ------------------CCeEEEEcCCHHHhcC-ccccCEEEECC----hHHHHHHHHHHHHHhcCCcEEEC
Confidence 2456777788766544 67788777753 23445677888999999998753
No 166
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=7e-07 Score=70.35 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=85.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||++||.|.--+.++..... ....+...|.|+..++..++.++..+.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~---------~~~~i~LrDys~~Nv~~g~~li~~~gL--------------------- 186 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPE---------RPDSILLRDYSPINVEKGRALIAERGL--------------------- 186 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCC---------CCceEEEEeCCHHHHHHHHHHHHHcCC---------------------
Confidence 38999999999998887776631 136799999999999999999988776
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCC---CCCCccchhhHhhhhccccccc---HHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE---LPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~ 154 (167)
...+.|...|..+ +.......++++.+..+..+++ +...++.+.+.+.|||+++.
T Consensus 187 -------------------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 187 -------------------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred -------------------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1223666665543 2333455788888877777766 67789999999999999988
Q ss_pred EeecccCCccC
Q psy889 155 LEFSHVNNSML 165 (167)
Q Consensus 155 ~~~~~~~~~~~ 165 (167)
+. .|.+|.+
T Consensus 248 Tg--QPwHPQl 256 (311)
T PF12147_consen 248 TG--QPWHPQL 256 (311)
T ss_pred cC--CCCCcch
Confidence 54 5555544
No 167
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.6e-07 Score=68.52 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=56.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+|||||.+++..+-.. ..+++++|+++++++.++++.+.. .+++++..+|+....
T Consensus 48 ~V~DlG~GTG~La~ga~~lG------------a~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~~--- 106 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLG------------ASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDFR--- 106 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcC------------CcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhcC---
Confidence 59999999999999876532 468999999999999999999763 358899999987753
Q ss_pred CCCceeeeeecc
Q psy889 82 DSYSAYTIAFGI 93 (167)
Q Consensus 82 ~~fd~~~~~~~~ 93 (167)
..||.+.+++|.
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 334466666555
No 168
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.54 E-value=4.6e-07 Score=67.28 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=65.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||..||+|.+....+.......+ .... ....++|+|+++.+++.++++++..+. .
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~-~~~~-~~~~~~g~Di~~~~v~~a~~N~~~ag~----~----------------- 87 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPP-LNDI-NELKIIGSDIDPKAVRGARENLKAAGV----E----------------- 87 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTST-TTH--CH--EEEEESSHHHHHHHHHHHHHTT-----C-----------------
T ss_pred EEeecCCCCCHHHHHHHHHhhCccc-cccc-ccccEEecCCCHHHHHHHHHHHHhccc----C-----------------
Confidence 6899999999999888766531110 0000 011389999999999999999987765 1
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc--------cccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN--------VTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~--------~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..+.+...|..+++..++++|.|+++--+.. ..-...+++++.++|++...++
T Consensus 88 -------------------~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 88 -------------------DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp -------------------GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred -------------------CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 2345555555555544556666665322110 0113566789999999944443
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 149 ~ 149 (179)
T PF01170_consen 149 T 149 (179)
T ss_dssp E
T ss_pred E
Confidence 3
No 169
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.53 E-value=3.3e-07 Score=66.67 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=79.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|.|+|-+|.+++.+.- +...++.++.|++.+....+.+...
T Consensus 51 pVlElGPGTGV~TkaIL~~gv----------~~~~L~~iE~~~dF~~~L~~~~p~~------------------------ 96 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGV----------RPESLTAIEYSPDFVCHLNQLYPGV------------------------ 96 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCC----------CccceEEEEeCHHHHHHHHHhCCCc------------------------
Confidence 699999999999999999875 4778999999999999998876432
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-----CCCccchhhHhhhhcccccccH--HHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-----PIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.+|...+ ..+...||.|+|..-+.+++-. .+++.++...|.+||.++.
T Consensus 97 ----------------------~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 97 ----------------------NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ----------------------cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 2233332222 2445669999997776666653 4678999999999999999
Q ss_pred EeecccC
Q psy889 155 LEFSHVN 161 (167)
Q Consensus 155 ~~~~~~~ 161 (167)
..+++-+
T Consensus 155 ftYgp~s 161 (194)
T COG3963 155 FTYGPLS 161 (194)
T ss_pred EEecCCC
Confidence 8888443
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.53 E-value=2.7e-07 Score=75.95 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||++||+|.++..++. .+.+++++|+++.+++.++++.+..+. .++++..+|++.
T Consensus 236 ~vLDL~cG~G~~~l~la~-------------~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~ 292 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAG-------------PDTQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAK 292 (374)
T ss_pred EEEEccCCccHHHHHHhh-------------cCCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHH
Confidence 699999999999999986 357899999999999999999876554 145555555443
No 171
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.53 E-value=2.8e-07 Score=78.65 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=73.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+||+|||.|.+...++... +...++|+|+....+..+.++....+.
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~-----------p~~~~iGiE~~~~~~~~~~~~~~~~~l---------------------- 396 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMN-----------PDALFIGVEVYLNGVANVLKLAGEQNI---------------------- 396 (506)
T ss_pred eEEEECCCchHHHHHHHHhC-----------CCCCEEEEEeeHHHHHHHHHHHHHcCC----------------------
Confidence 48999999999999999877 478899999999999988888766554
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccccccc--------HHHHHHHHHHhcCCCcE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGR 151 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~ 151 (167)
.++.+...++..+ .++++++|.|.+++---|.+. -...++.+.++|+|||.
T Consensus 397 -------------------~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 397 -------------------TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGN 457 (506)
T ss_pred -------------------CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence 3454444443321 144555666666543333221 24667899999999999
Q ss_pred EEEEe
Q psy889 152 FLCLE 156 (167)
Q Consensus 152 l~~~~ 156 (167)
+.+.+
T Consensus 458 i~~~T 462 (506)
T PRK01544 458 LVFAS 462 (506)
T ss_pred EEEEc
Confidence 98744
No 172
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=9.1e-07 Score=72.37 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=80.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|++.|+-|.++++.+.. .+..+++.|.++.-+...+.++++.+. .++.....|...++
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~---------~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMEN---------EGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAEL 223 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCC---------CCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccc
Confidence 47999999999999999998852 245569999999999999999999887 22444555544433
Q ss_pred -CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 79 -IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.....||.+++.-+=+....... +. +..+....-|+.-+ ..-..++|..+.+.|||||.|+++++
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr-------~P-d~~~~~~~~~i~~l------~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRR-------DP-DVKWRRTPEDIAEL------AKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ccccCcCcEEEECCCCCCCccccc-------Cc-cccccCCHHHHHHH------HHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 22223564444433322110000 00 00000000011111 12356888999999999999999776
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
+-
T Consensus 290 S~ 291 (355)
T COG0144 290 SL 291 (355)
T ss_pred CC
Confidence 63
No 173
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.48 E-value=5.9e-07 Score=71.77 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=67.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.++|.-+|.|+++..++..+. .++++|+|.++.+++.+++++.... .+++++.+++.+++
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~-----------~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLG-----------TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNFANFFEHL 85 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCC-----------CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCHHHHHHHH
Confidence 589999999999999998773 4889999999999999999886432 47889999988875
Q ss_pred --CCCCCCceeeeeeccccccC
Q psy889 79 --IESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~ 98 (167)
...+.+|.+....|.+.+..
T Consensus 86 ~~~~~~~vDgIl~DLGvSS~Ql 107 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVSSPQL 107 (305)
T ss_pred HhcCCCcccEEEEeccCCHhhc
Confidence 34467999999999988863
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.46 E-value=5e-07 Score=70.73 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=58.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. .+++++..+|+.+++++
T Consensus 32 ~VLEIG~G~G~lt~~L~~~-------------~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 32 PVLEIGPGKGALTDELAKR-------------AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKVDLP- 90 (258)
T ss_pred eEEEEeCccCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccCCch-
Confidence 6999999999999999884 45799999999999999987643 24789999999988765
Q ss_pred CCCceeeeeeccc
Q psy889 82 DSYSAYTIAFGIR 94 (167)
Q Consensus 82 ~~fd~~~~~~~~~ 94 (167)
.||.+..+.+..
T Consensus 91 -~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 -EFNKVVSNLPYQ 102 (258)
T ss_pred -hceEEEEcCCcc
Confidence 378887777664
No 175
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.46 E-value=5.9e-07 Score=74.14 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=70.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||++||+|..+..++.... ..+++++|+++.+++.++++++..+.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~-----------~~~V~a~Din~~Av~~a~~N~~~N~~---------------------- 106 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETG-----------VEKVTLNDINPDAVELIKKNLELNGL---------------------- 106 (382)
T ss_pred EEEECCCcccHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCC----------------------
Confidence 799999999999999988652 45799999999999999999875544
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+..+...|...+......||+|.+.- ......++..+.+.+++||+++++
T Consensus 107 -------------------~~~~v~~~Da~~~l~~~~~fD~V~lDP----~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 107 -------------------ENEKVFNKDANALLHEERKFDVVDIDP----FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -------------------CceEEEhhhHHHHHhhcCCCCEEEECC----CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 223344555433211134588886632 122345677777888999999986
No 176
>KOG1499|consensus
Probab=98.46 E-value=3.4e-07 Score=73.56 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=71.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-++...+++. ..+++++|.|.- .+.|.+.+...+.
T Consensus 63 ~VlDVGcGtGILS~F~akAG------------A~~V~aVe~S~i-a~~a~~iv~~N~~---------------------- 107 (346)
T KOG1499|consen 63 TVLDVGCGTGILSMFAAKAG------------ARKVYAVEASSI-ADFARKIVKDNGL---------------------- 107 (346)
T ss_pred EEEEcCCCccHHHHHHHHhC------------cceEEEEechHH-HHHHHHHHHhcCc----------------------
Confidence 69999999999999999876 578999997764 4888888775544
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccc---cccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN---VTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
...+.+.++..+++.++..++|+|++.+.=.+ -.-+..++--=-++|+|||.++
T Consensus 108 ------------------~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 ------------------EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ------------------cceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 13466777777666555678999988553221 1234455544468999999886
No 177
>KOG3420|consensus
Probab=98.46 E-value=1.5e-07 Score=67.04 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=63.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+.++|+|||.|.++...+. . ....++|+|+++++++.++++.+.... +..+...|+..+-+.
T Consensus 50 kkl~DLgcgcGmLs~a~sm-~-----------~~e~vlGfDIdpeALEIf~rNaeEfEv------qidlLqcdildle~~ 111 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSM-P-----------KNESVLGFDIDPEALEIFTRNAEEFEV------QIDLLQCDILDLELK 111 (185)
T ss_pred cchhhhcCchhhhHHHhhc-C-----------CCceEEeeecCHHHHHHHhhchHHhhh------hhheeeeeccchhcc
Confidence 4689999999999866544 2 145699999999999999999987765 568899999999999
Q ss_pred CCCCceeeeeeccc
Q psy889 81 SDSYSAYTIAFGIR 94 (167)
Q Consensus 81 ~~~fd~~~~~~~~~ 94 (167)
+..||.+++..+.-
T Consensus 112 ~g~fDtaviNppFG 125 (185)
T KOG3420|consen 112 GGIFDTAVINPPFG 125 (185)
T ss_pred CCeEeeEEecCCCC
Confidence 99999999987763
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.46 E-value=3.9e-07 Score=71.93 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=57.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|.++..+++.. .+++++|+++.+++.++++... +++++..+|+..++++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~-------------~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERA-------------AKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALKVDLS 102 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhC-------------CcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhcCCHH
Confidence 379999999999999999854 4899999999999999876531 4788999999998765
Q ss_pred CCCCceeeeeecc
Q psy889 81 SDSYSAYTIAFGI 93 (167)
Q Consensus 81 ~~~fd~~~~~~~~ 93 (167)
...++.++...+.
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4324666666654
No 179
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=1.2e-06 Score=69.25 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=69.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
..+|..-|.|+++.+++..+. ...+++++|.++.+++.|++++.... +++.++.+.+.++.
T Consensus 26 iyiD~TlG~GGHS~~iL~~l~----------~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 26 IYIDGTLGAGGHSRAILEKLP----------DLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNFANLAEAL 89 (314)
T ss_pred EEEEecCCCcHhHHHHHHhCC----------CCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcHHHHHHHH
Confidence 468999999999999999885 36789999999999999999986543 48899999988875
Q ss_pred --CCCCCCceeeeeeccccccC
Q psy889 79 --IESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~ 98 (167)
..-..+|.++...|.+.+..
T Consensus 90 ~~~~i~~vDGiL~DLGVSS~QL 111 (314)
T COG0275 90 KELGIGKVDGILLDLGVSSPQL 111 (314)
T ss_pred HhcCCCceeEEEEeccCCcccc
Confidence 44568999999999999873
No 180
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.46 E-value=5.5e-07 Score=70.75 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=87.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+||=.|||.|.++..++. .+..+.|.|.|-.|+-..+-.+..... .....=-||-
T Consensus 58 ~~VLVPGsGLGRLa~Eia~-------------~G~~~~gnE~S~~Mll~s~fiLn~~~~-----------~~~~~I~Pf~ 113 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAK-------------LGYAVQGNEFSYFMLLASNFILNHCSQ-----------PNQFTIYPFV 113 (270)
T ss_pred cEEEEcCCCcchHHHHHhh-------------ccceEEEEEchHHHHHHHHHHHcccCC-----------CCcEEEecce
Confidence 3799999999999999998 467899999999998777655442110 0001111343
Q ss_pred CCCCceeeeeeccccccCC----------CCceEEeecccCCCCCCc---cchhhHhhhhcccccccHHHHHHHHHHhcC
Q psy889 81 SDSYSAYTIAFGIRNIDIP----------NPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKALSEAYRVLK 147 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~~~---~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lk 147 (167)
...-.....+..+|.+..| ..++....+|...+...+ ++||.|+..+.++--+++-..++.|+++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 3333333333333333211 246777778877665444 789999888877777889999999999999
Q ss_pred CCcEEE
Q psy889 148 PGGRFL 153 (167)
Q Consensus 148 pgG~l~ 153 (167)
|||+.+
T Consensus 194 pgG~WI 199 (270)
T PF07942_consen 194 PGGYWI 199 (270)
T ss_pred cCCEEE
Confidence 999765
No 181
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.45 E-value=1.3e-06 Score=65.47 Aligned_cols=47 Identities=13% Similarity=-0.058 Sum_probs=40.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||++||+|.++..++... ..+++++|.++.+++.++++++..+.
T Consensus 51 ~~vLDLfaGsG~lglea~srg------------a~~v~~vE~~~~a~~~~~~N~~~~~~ 97 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRG------------AKVAFLEEDDRKANQTLKENLALLKS 97 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 379999999999999999854 34799999999999999999876654
No 182
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.44 E-value=2e-07 Score=73.90 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=69.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-CC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-l~- 78 (167)
.+|||+.|-||+++.+.+... ..+++.+|.|..+++.+++++...+. ...++++..+|+.. +.
T Consensus 125 krvLnlFsYTGgfsv~Aa~gG------------A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGG------------AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTT------------ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHCC------------CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHH
Confidence 489999999999999887632 34799999999999999999875543 23455666665433 11
Q ss_pred C-CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 79 I-ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 79 ~-~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
. ..+.|| ++..|.+.+ ..+.+++ ..+...++..+.++|+|||.|+++..
T Consensus 190 ~~~~~~fD-------------------~IIlDPPsF--~k~~~~~---------~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 190 LKKGGRFD-------------------LIILDPPSF--AKSKFDL---------ERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHTT-EE-------------------EEEE--SSE--ESSTCEH---------HHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HhcCCCCC-------------------EEEECCCCC--CCCHHHH---------HHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 0 112233 333333222 1222332 23566788899999999999987665
Q ss_pred cc
Q psy889 158 SH 159 (167)
Q Consensus 158 ~~ 159 (167)
++
T Consensus 240 s~ 241 (286)
T PF10672_consen 240 SH 241 (286)
T ss_dssp -T
T ss_pred Cc
Confidence 43
No 183
>PLN02823 spermine synthase
Probab=98.44 E-value=6.3e-07 Score=72.73 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=68.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||.+|+|.|..++.++++. ...+++.+|+++.+++.+++.+..... ....
T Consensus 106 ~VLiiGgG~G~~~re~l~~~-----------~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~d----------------- 156 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHK-----------TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCD----------------- 156 (336)
T ss_pred EEEEECCCchHHHHHHHhCC-----------CCCeEEEEECCHHHHHHHHHhcccccc-cccC-----------------
Confidence 79999999999999988864 256899999999999999987642110 0011
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccc---cc---cHHHHHH-HHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN---VT---RIDKALS-EAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~---~~---~~~~~l~-~~~~~LkpgG~l~ 153 (167)
.++.+...|.... ......||+|++-..-.. .+ -...+++ .+.+.|+|||.++
T Consensus 157 -------------------prv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 157 -------------------KRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred -------------------CceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 3445554444331 222356777776421100 00 0234566 7899999999987
Q ss_pred E
Q psy889 154 C 154 (167)
Q Consensus 154 ~ 154 (167)
+
T Consensus 218 ~ 218 (336)
T PLN02823 218 T 218 (336)
T ss_pred E
Confidence 6
No 184
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.44 E-value=1.4e-07 Score=78.93 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=37.0
Q ss_pred CCCCCCccchhhHhhhhccc-ccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 111 EELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 111 ~~~~~~~~~~D~v~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+|+++..||+|-|+..+. |.+.-..+|-++.|+|+|||+++.+.
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecC
Confidence 45788999999999977654 55555668889999999999998843
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.42 E-value=4.4e-07 Score=76.27 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=71.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-++...+++..... ...++++++-++.++...+++....++
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~-------~a~~VyAVEkn~~A~~~l~~~v~~n~w---------------------- 239 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAG-------GAVKVYAVEKNPNAVVTLQKRVNANGW---------------------- 239 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHC-------CESEEEEEESSTHHHHHHHHHHHHTTT----------------------
T ss_pred EEEEeCCCccHHHHHHHHHHHHhC-------CCeEEEEEcCCHhHHHHHHHHHHhcCC----------------------
Confidence 599999999999888777542100 246899999999988888777555444
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
+.++.++..|++++..+. ++|+|++-.. +..-......+....+.|||||.++
T Consensus 240 ------------------~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 240 ------------------GDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ------------------TTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ------------------CCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 267899999998876543 7899988432 1111234456777889999999886
No 186
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.42 E-value=7.3e-07 Score=70.63 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=78.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..++.++++. ...+++.+|++++.++.+++.+.....
T Consensus 79 ~VLiiGgGdG~tlRevlkh~-----------~ve~i~~VEID~~Vi~~ar~~l~~~~~---------------------- 125 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHL-----------PVERITMVEIDPAVIELARKYLPEPSG---------------------- 125 (282)
T ss_pred eEEEECCCccHHHHHHHhcC-----------CcceEEEEEcCHHHHHHHHHhccCccc----------------------
Confidence 79999999999999999987 378899999999999999988764431
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccc-----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+| +++.++..|..++ .....+||+|++-..-. .. .....++.+++.|+++|.++.-
T Consensus 126 ~~~d---------------pRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 126 GADD---------------PRVEIIIDDGVEFLRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ccCC---------------CceEEEeccHHHHHHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 0001 6777777776553 22334799998855322 11 1367789999999999999884
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.41 E-value=4.4e-07 Score=69.83 Aligned_cols=36 Identities=19% Similarity=-0.010 Sum_probs=31.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (167)
+|||+|||+|.++..+++.. ..+++++|+++.++..
T Consensus 78 ~vlDiG~gtG~~t~~l~~~g------------a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQKG------------AKEVYGVDVGYNQLAE 113 (228)
T ss_pred EEEEcccCCCHHHHHHHHcC------------CCEEEEEeCCHHHHHH
Confidence 69999999999999999852 4679999999988876
No 188
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=1e-06 Score=71.28 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=80.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+|+.+|.|.+++.++.+.. ..++++|+++.+++..++++.....
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~g~------------~~V~A~diNP~A~~~L~eNi~LN~v---------------------- 236 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKKGR------------PKVYAIDINPDAVEYLKENIRLNKV---------------------- 236 (341)
T ss_pred EEEEccCCcccchhhhhhcCC------------ceEEEEecCHHHHHHHHHHHHhcCc----------------------
Confidence 799999999999999998762 3399999999999999999976555
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
...+....+|...+....+.+|-|++.. .......+..+.+.+++||.+.+.++++.+
T Consensus 237 ------------------~~~v~~i~gD~rev~~~~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 237 ------------------EGRVEPILGDAREVAPELGVADRIIMGL----PKSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------------------cceeeEEeccHHHhhhccccCCEEEeCC----CCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 1346667777766655446778887754 344566677777888889999888877655
Q ss_pred C
Q psy889 162 N 162 (167)
Q Consensus 162 ~ 162 (167)
.
T Consensus 295 ~ 295 (341)
T COG2520 295 D 295 (341)
T ss_pred h
Confidence 4
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.39 E-value=8.4e-07 Score=70.80 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+. .+++++..+|+.+.++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~-------------~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQL-------------AKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDALKTEF-- 99 (294)
T ss_pred EEEEecCchHHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHhhhcc--
Confidence 6999999999999999873 46799999999999999998865432 3578999999987654
Q ss_pred CCCceeeeeecc
Q psy889 82 DSYSAYTIAFGI 93 (167)
Q Consensus 82 ~~fd~~~~~~~~ 93 (167)
..||.++...++
T Consensus 100 ~~~d~VvaNlPY 111 (294)
T PTZ00338 100 PYFDVCVANVPY 111 (294)
T ss_pred cccCEEEecCCc
Confidence 357777776665
No 190
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.39 E-value=2.1e-06 Score=70.83 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC-C
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l-~ 78 (167)
.|||++.|-||.++.+.+.. ++ +++.+|.|...++.|+++.+-.+. ...+.+|+.+|.-+. .
T Consensus 219 krvLNlFsYTGgfSv~Aa~g-------------GA~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALG-------------GASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLR 282 (393)
T ss_pred CeEEEecccCcHHHHHHHhc-------------CCCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHH
Confidence 37999999999999998873 55 899999999999999999976554 333455555553331 1
Q ss_pred ---CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 79 ---IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
-.+..||.+++ |.+...-. +-+ .+....+...++..+.++|+|||.++++
T Consensus 283 ~~~~~g~~fDlIil-------------------DPPsF~r~--k~~------~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 283 KAERRGEKFDLIIL-------------------DPPSFARS--KKQ------EFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred HHHhcCCcccEEEE-------------------CCcccccC--ccc------chhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11223332222 22111100 000 0111345667788999999999999987
Q ss_pred eecc
Q psy889 156 EFSH 159 (167)
Q Consensus 156 ~~~~ 159 (167)
..+.
T Consensus 336 s~~~ 339 (393)
T COG1092 336 SCSR 339 (393)
T ss_pred ecCC
Confidence 6543
No 191
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.38 E-value=5.3e-06 Score=57.02 Aligned_cols=105 Identities=28% Similarity=0.331 Sum_probs=68.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 82 (167)
++|+|||+|..+ .+..... ....++++|.+..++..++..... ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-~~----------------------- 96 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG----------RGAYVVGVDLSPEMLALARARAEG-AG----------------------- 96 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC----------CCceEEEEeCCHHHHHHHHhhhhh-cC-----------------------
Confidence 799999999987 3333221 124788999999999985554432 21
Q ss_pred CCceeeeeeccccccCCCCc-eEEeecccCC--CCCCc-cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 83 SYSAYTIAFGIRNIDIPNPR-LRFLEANAEE--LPIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 83 ~fd~~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.. +.+...+... .++.. ..||++ +.....+.......+.++.+.++|+|.+++....
T Consensus 97 ------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 97 ------------------LGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ------------------CCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 3444444443 45554 478998 5444333323788999999999999999997765
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 158 ~~~ 160 (257)
T COG0500 158 RDG 160 (257)
T ss_pred CCC
Confidence 443
No 192
>KOG1269|consensus
Probab=98.35 E-value=4.6e-07 Score=74.11 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=87.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||.|.....+...- ...++|.|.++..+..+.........
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~------------~~~~~Gl~~n~~e~~~~~~~~~~~~l---------------------- 158 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFK------------KAGVVGLDNNAYEAFRANELAKKAYL---------------------- 158 (364)
T ss_pred cccccCcCcCchhHHHHHhc------------cCCccCCCcCHHHHHHHHHHHHHHHh----------------------
Confidence 47899999999999987643 67899999999888877766654443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
..+-.++..+.-+.++.+.+||.+.+..+..+.++...++++++++++|||+++..++...
T Consensus 159 ------------------~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 159 ------------------DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ------------------hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 1233446667777788899999999999999999999999999999999999998776643
No 193
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.34 E-value=6.2e-07 Score=66.84 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.+|||+.||+|.+++..+... ..+++.+|.++..+...+++++..+.
T Consensus 44 ~~vLDLFaGSGalGlEALSRG------------A~~v~fVE~~~~a~~~i~~N~~~l~~ 90 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRG------------AKSVVFVEKNRKAIKIIKKNLEKLGL 90 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-------------SEEEEEES-HHHHHHHHHHHHHHT-
T ss_pred CeEEEcCCccCccHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 379999999999999888743 35899999999999999999987765
No 194
>KOG3045|consensus
Probab=98.33 E-value=1e-06 Score=68.39 Aligned_cols=55 Identities=25% Similarity=0.464 Sum_probs=44.5
Q ss_pred eEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 103 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
-.+...|+..+|..+.+.|++++-..+. -.++...+.+++|+|++||.+++.+..
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehh
Confidence 3456678888999999999987644332 467888999999999999999998864
No 195
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.33 E-value=1.8e-06 Score=68.30 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=69.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||+|||+|..+.++.+.++ ...+++++|.|+.|++.++...+...... ..+
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~----------~~~~~~~vd~s~~~~~l~~~l~~~~~~~~----~~~------------ 88 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWP----------SLKEYTCVDRSPEMLELAKRLLRAGPNNR----NAE------------ 88 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhc----------CceeeeeecCCHHHHHHHHHHHhcccccc----cch------------
Confidence 3799999999998888877774 25679999999999999998765432200 000
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.......+. .+. ...|+|++++++..+++ ...+++++++.+.+ .|+++|-+
T Consensus 89 ---------------------~~~~~~~~~--~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 89 ---------------------WRRVLYRDF--LPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred ---------------------hhhhhhccc--ccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 000000111 111 12399999998887766 34555666666654 88888876
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.+.
T Consensus 142 t~~ 144 (274)
T PF09243_consen 142 TPA 144 (274)
T ss_pred ChH
Confidence 654
No 196
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.31 E-value=2.2e-06 Score=69.10 Aligned_cols=82 Identities=11% Similarity=-0.069 Sum_probs=60.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc-ccCCCCCCcccccc-ccccc--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLE-ANAEE-- 76 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~d~~~-- 76 (167)
.+|||+|||+|.+...++... .+.+++|+|+++.+++.|+++++.. .. .++++... .+...
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~-----------~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHE-----------YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIF 180 (321)
T ss_pred ceEEEecCCccHHHHHHHhhC-----------CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhh
Confidence 379999999998888777655 3788999999999999999999765 22 23454432 22222
Q ss_pred --CCCCCCCCceeeeeecccccc
Q psy889 77 --LPIESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 77 --l~~~~~~fd~~~~~~~~~~~~ 97 (167)
+..+.+.||++.+.+|...-.
T Consensus 181 ~~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 181 KGIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred hcccccCCceEEEEeCCCCcCcc
Confidence 223577899999999987543
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.30 E-value=2.5e-06 Score=63.65 Aligned_cols=98 Identities=24% Similarity=0.234 Sum_probs=78.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+++|+|+|.|-=+..++-.. +..+++.+|.+..-+...+.-....+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-----------p~~~~~LvEs~~KK~~FL~~~~~~L~L---------------------- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-----------PDLQVTLVESVGKKVAFLKEVVRELGL---------------------- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH------------TTSEEEEEESSHHHHHHHHHHHHHHT-----------------------
T ss_pred eEEecCCCCCChhHHHHHhC-----------CCCcEEEEeCCchHHHHHHHHHHHhCC----------------------
Confidence 68999999998888877666 478899999999999999988887776
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+.....++ +.....||+|++.. +..+..++.-+...+++||.+++.-
T Consensus 98 -------------------~nv~v~~~R~E~-~~~~~~fd~v~aRA----v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 98 -------------------SNVEVINGRAEE-PEYRESFDVVTARA----VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------------------SSEEEEES-HHH-TTTTT-EEEEEEES----SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------------------CCEEEEEeeecc-cccCCCccEEEeeh----hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 567777777766 55567899998854 6778888888999999999998853
No 198
>KOG3191|consensus
Probab=98.29 E-value=1.4e-05 Score=59.14 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=73.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 82 (167)
++|+|||+|-.+-.+++... ++..+.++|+++.+++..++-+..... +..-+.+|...
T Consensus 47 ~lEIG~GSGvvstfL~~~i~----------~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~------ 104 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIG----------PQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLS------ 104 (209)
T ss_pred EEEecCCcchHHHHHHHhcC----------CCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHh------
Confidence 79999999999999988775 478899999999999998877765443 11111111111
Q ss_pred CCceeeeeeccccccCCCCceEEeecccCCCCCCccch--hhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 83 SYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSY--SAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 83 ~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+++ .++++++..+..-+|-.+... .-+-..+. -....-+++++.++-..|.|.|.+++....
T Consensus 105 ---------~l~-----~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 105 ---------GLR-----NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred ---------hhc-----cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 111 145666666655444332222 11111111 112223677888888999999999986544
No 199
>KOG1661|consensus
Probab=98.29 E-value=2.4e-06 Score=64.41 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=77.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
..||+|+|+|.++..++..+.. ++....|+|.-++.++.+++++......+..
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~---------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~------------------ 137 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGA---------TGGNVHGIEHIPELVEYSKKNLDKDITTSES------------------ 137 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcC---------CCccccchhhhHHHHHHHHHHHHhhccCchh------------------
Confidence 5799999999999999887752 3555699999999999999998754321000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
++ ....+++.++.+|..........||.|.+.. .....-+++...|++||.+++.-
T Consensus 138 --~~-----------~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 138 --SS-----------KLKRGELSIVVGDGRKGYAEQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --hh-----------hhccCceEEEeCCccccCCccCCcceEEEcc------CccccHHHHHHhhccCCeEEEee
Confidence 00 0012567778888877766778899998853 23344456777889999999843
No 200
>KOG3987|consensus
Probab=98.29 E-value=4.1e-07 Score=68.49 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=69.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.++||+|+|.|.++.++++.+ .++++++.|..|....+++--
T Consensus 114 ~~lLDlGAGdGeit~~m~p~f-------------eevyATElS~tMr~rL~kk~y------------------------- 155 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTF-------------EEVYATELSWTMRDRLKKKNY------------------------- 155 (288)
T ss_pred eeEEeccCCCcchhhhhcchH-------------HHHHHHHhhHHHHHHHhhcCC-------------------------
Confidence 479999999999999999865 569999999999887775421
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCC-CcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~ 154 (167)
.++. ..+....+-+||+|.|.+.+..-.+.-++++.++.+|+| +|+.++
T Consensus 156 -----------------------nVl~--~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 156 -----------------------NVLT--EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred -----------------------ceee--ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 1111 111112234599999999888777888999999999999 898876
No 201
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.28 E-value=3.2e-06 Score=65.93 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=36.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
.+|||+|||+|.++..+++.. .+++++|+++.+++.++++..
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~-------------~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRA-------------KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-------------CcEEEEECCHHHHHHHHHHhC
Confidence 379999999999999999854 459999999999999987663
No 202
>KOG1663|consensus
Probab=98.25 E-value=6.3e-06 Score=62.90 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=76.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|.-+|.-+..++..++ .+++++++|++++..+.+.+..+..+.
T Consensus 76 ~~lelGvfTGySaL~~Alalp----------~dGrv~a~eid~~~~~~~~~~~k~agv---------------------- 123 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALP----------EDGRVVAIEIDADAYEIGLELVKLAGV---------------------- 123 (237)
T ss_pred eEEEEecccCHHHHHHHHhcC----------CCceEEEEecChHHHHHhHHHHHhccc----------------------
Confidence 789999999999999999886 589999999999999999877776665
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-C-----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-L-----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++.....+ + ....++||.++.-. +...--....++.+++|+||.+++
T Consensus 124 ------------------~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 124 ------------------DHKITFIEGPALESLDELLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred ------------------cceeeeeecchhhhHHHHHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEE
Confidence 2466666654332 1 13467889886632 222233677899999999999998
No 203
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.24 E-value=4.7e-07 Score=69.26 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=64.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+|||.|.|-|..+...++ +++ +++.++.++..++.|+-+.-....+.
T Consensus 137 rVLDtC~GLGYtAi~a~~-------------rGA~~VitvEkdp~VLeLa~lNPwSr~l~~------------------- 184 (287)
T COG2521 137 RVLDTCTGLGYTAIEALE-------------RGAIHVITVEKDPNVLELAKLNPWSRELFE------------------- 184 (287)
T ss_pred EeeeeccCccHHHHHHHH-------------cCCcEEEEEeeCCCeEEeeccCCCCccccc-------------------
Confidence 799999999999999888 456 99999999999999986642222210
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhh---hcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~---~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.+++++.+|..++ .+.+.+||+|+.- +++..----..+-.+++|+|||||.++=
T Consensus 185 --------------------~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 185 --------------------IAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred --------------------cccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 1234444444332 2444455555431 0000000124566899999999999874
No 204
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.19 E-value=1.8e-06 Score=70.82 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=45.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||++||+|.++..+++.. .+++++|.++.+++.+++++...+. .++++..+|+..
T Consensus 209 ~vLDl~~G~G~~sl~la~~~-------------~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d~~~ 265 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF-------------RRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMSAEE 265 (362)
T ss_pred eEEEEeccccHHHHHHHhhC-------------CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECCHHH
Confidence 69999999999999888743 5799999999999999999876554 245555555443
No 205
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.19 E-value=2.9e-06 Score=67.36 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=77.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
.+|||+|++.|+-+.++++.+. ..+++++.|++..-+...+.+.++.+. .++.....|.....
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~----------~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMG----------NKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPK 151 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTT----------TTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHH
T ss_pred ccccccccCCCCceeeeeeccc----------chhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeecccccccc
Confidence 3699999999999999999885 368999999999999999999988776 22333334433331
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh--hhcccc-cccHHHHHHHHHHhc----CCCcE
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI--AFGIRN-VTRIDKALSEAYRVL----KPGGR 151 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~--~~~~~~-~~~~~~~l~~~~~~L----kpgG~ 151 (167)
.....||.+.+.-+=+.... -....|.-.. ..-+.. .....++|+.+.+.+ ||||+
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~-----------------i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~ 214 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGT-----------------IRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR 214 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGG-----------------TTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE
T ss_pred ccccccchhhcCCCccchhh-----------------hhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe
Confidence 22223443333322221100 0000111111 000001 122568899999999 99999
Q ss_pred EEEEeec
Q psy889 152 FLCLEFS 158 (167)
Q Consensus 152 l~~~~~~ 158 (167)
+++++++
T Consensus 215 lvYsTCS 221 (283)
T PF01189_consen 215 LVYSTCS 221 (283)
T ss_dssp EEEEESH
T ss_pred EEEEecc
Confidence 9997765
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.16 E-value=2.1e-06 Score=70.17 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=45.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (167)
+|||++||+|.++..+++.. .+++++|+++.+++.+++++...+. .++++..+|+++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-------------~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~~ 256 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-------------RRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAEE 256 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-------------CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHHH
Confidence 69999999999999888754 4799999999999999999876543 245555555544
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.16 E-value=3e-06 Score=66.00 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=70.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|..+..++++. ...+++.+|+++..++.+++.+...... ..
T Consensus 79 ~VLiiGgG~G~~~~ell~~~-----------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~------------------ 128 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHP-----------PVESITVVEIDPEVVELARKYFPEFSEG-LD------------------ 128 (246)
T ss_dssp EEEEEESTTSHHHHHHTTST-----------T-SEEEEEES-HHHHHHHHHHTHHHHTT-GG------------------
T ss_pred ceEEEcCCChhhhhhhhhcC-----------CcceEEEEecChHHHHHHHHhchhhccc-cC------------------
Confidence 79999999999999998765 2578999999999999999877543320 01
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCcc-chhhHhhhhcccccc----cHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESD-SYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~D~v~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.+++.++..|.... .-... .||+|+.-..-..-+ -....++.+.+.|+|||.+++-
T Consensus 129 ------------------d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 129 ------------------DPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp ------------------STTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 14556655554332 11122 677776632211111 1357788999999999999874
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 191 ~ 191 (246)
T PF01564_consen 191 A 191 (246)
T ss_dssp E
T ss_pred c
Confidence 4
No 208
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.14 E-value=3.5e-06 Score=61.56 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--C
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 79 (167)
.|+|++||.|+.+..+++. ..+++++|+++..++.++.+++..+. +.+++++.+|..++. +
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-------------~~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~ 64 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-------------FDRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRL 64 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-------------T-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB
T ss_pred EEEEeccCcCHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhc
Confidence 6999999999999999995 46799999999999999999998875 568999999988863 3
Q ss_pred CCCC-Cceeeeeecc
Q psy889 80 ESDS-YSAYTIAFGI 93 (167)
Q Consensus 80 ~~~~-fd~~~~~~~~ 93 (167)
.... ||.+-+++|-
T Consensus 65 ~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 65 KSNKIFDVVFLSPPW 79 (163)
T ss_dssp ------SEEEE---B
T ss_pred cccccccEEEECCCC
Confidence 3333 7888888766
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.14 E-value=1.4e-05 Score=64.52 Aligned_cols=47 Identities=9% Similarity=-0.091 Sum_probs=39.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
.|+|+|||+|.-+..+++++...- ...+|+++|+|.++++.+.+++.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~-------~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQK-------KSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcC-------CCceEEEEECCHHHHHHHHHhhh
Confidence 689999999999999999884100 25789999999999999999886
No 210
>KOG3178|consensus
Probab=98.12 E-value=9.9e-06 Score=65.30 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=74.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
..+|+|+|.|.++..++.++ .++-+++.+...+..+...+. .+
T Consensus 180 ~avDvGgGiG~v~k~ll~~f-------------p~ik~infdlp~v~~~a~~~~-~g----------------------- 222 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKY-------------PHIKGINFDLPFVLAAAPYLA-PG----------------------- 222 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhC-------------CCCceeecCHHHHHhhhhhhc-CC-----------------------
Confidence 46899999999999999854 457788888888777776553 11
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCC-CCCCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+.....|+-+ +| +-|+|++.+++|+++| ..++|++++.-|+|||.+++.|.-
T Consensus 223 ---------------------V~~v~gdmfq~~P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 223 ---------------------VEHVAGDMFQDTP----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred ---------------------cceecccccccCC----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 3334444433 33 3469999999998876 568899999999999999999986
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
.++
T Consensus 278 ~p~ 280 (342)
T KOG3178|consen 278 TPE 280 (342)
T ss_pred CCC
Confidence 554
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=98.11 E-value=1.4e-05 Score=62.72 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=69.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+||=+|+|-|..++.++++- .+++-+|+++..++.+++.+.....
T Consensus 74 k~VLIiGGGDGg~~REvLkh~-------------~~v~mVeID~~Vv~~~k~~lP~~~~--------------------- 119 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKYD-------------THVDFVQADEKILDSFISFFPHFHE--------------------- 119 (262)
T ss_pred CeEEEEcCCchHHHHHHHCcC-------------CeeEEEECCHHHHHHHHHHCHHHHH---------------------
Confidence 379999999999999999862 3899999999999999987654321
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.|+ .+++.+... .. ....++||+|++-.. ......+.+++.|+|||.++.
T Consensus 120 --~~~--------------DpRv~l~~~-~~--~~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 120 --VKN--------------NKNFTHAKQ-LL--DLDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred --hhc--------------CCCEEEeeh-hh--hccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 011 245555431 11 112357999987432 235667889999999999987
No 212
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.08 E-value=1.1e-06 Score=70.34 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=59.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
.++|.--|.|+++.++++++. +++++|+|.++.+++.+++++... .++..+..+++.++.
T Consensus 23 ~~vD~T~G~GGHS~aiL~~~~-----------~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 23 IYVDCTFGGGGHSKAILEKLP-----------NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-----------T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-GGGHHHHH
T ss_pred eEEeecCCcHHHHHHHHHhCC-----------CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccHHHHHHHH
Confidence 478999999999999999884 699999999999999999877543 358889999988875
Q ss_pred --C-CCCCCceeeeeecccccc
Q psy889 79 --I-ESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 79 --~-~~~~fd~~~~~~~~~~~~ 97 (167)
. ....+|.++...|.+.+.
T Consensus 86 ~~~~~~~~~dgiL~DLGvSS~Q 107 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGVSSMQ 107 (310)
T ss_dssp HHTTTTS-EEEEEEE-S--HHH
T ss_pred HHccCCCccCEEEEccccCHHH
Confidence 4 567999999999998886
No 213
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1e-05 Score=67.73 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=64.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
++++|+-||.|.+++.++. ...+++|+|+++++++.|+++++..+. .|+++..+++++...
T Consensus 295 ~~vlDlYCGvG~f~l~lA~-------------~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 295 ERVLDLYCGVGTFGLPLAK-------------RVKKVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGDAEEFTPA 356 (432)
T ss_pred CEEEEeccCCChhhhhhcc-------------cCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHHhhh
Confidence 4799999999999999996 367899999999999999999987665 458899899888753
Q ss_pred --CCCCCceeeeeeccccc
Q psy889 80 --ESDSYSAYTIAFGIRNI 96 (167)
Q Consensus 80 --~~~~fd~~~~~~~~~~~ 96 (167)
.+..||.++..++....
T Consensus 357 ~~~~~~~d~VvvDPPR~G~ 375 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGA 375 (432)
T ss_pred ccccCCCCEEEECCCCCCC
Confidence 34577877777777543
No 214
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.01 E-value=1.8e-05 Score=65.15 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=70.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+.||+|..++.++.... -..++++.|+++.+++.++++++....
T Consensus 47 ~vLD~faGsG~rgir~a~e~~----------ga~~Vv~nD~n~~Av~~i~~N~~~N~~---------------------- 94 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIE----------GVREVFANDINPKAVESIKNNVEYNSV---------------------- 94 (374)
T ss_pred EEEECCCchhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHhCC----------------------
Confidence 699999999999999998642 135799999999999999999875443
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++.+...|...+. .....||+|..-- .......+..+.+.+++||.++++
T Consensus 95 -------------------~~~~v~~~Da~~~l~~~~~~fDvIdlDP----fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 95 -------------------ENIEVPNEDAANVLRYRNRKFHVIDIDP----FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------------------CcEEEEchhHHHHHHHhCCCCCEEEeCC----CCCcHHHHHHHHHhcccCCEEEEE
Confidence 23444444443321 1123577775521 223346788889999999999986
No 215
>KOG1500|consensus
Probab=98.00 E-value=2e-05 Score=63.48 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=65.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|||+|||+|-+++..+++. ..++++++-| .|.+.|++.......
T Consensus 180 iVlDVGaGSGILS~FAaqAG------------A~~vYAvEAS-~MAqyA~~Lv~~N~~---------------------- 224 (517)
T KOG1500|consen 180 IVLDVGAGSGILSFFAAQAG------------AKKVYAVEAS-EMAQYARKLVASNNL---------------------- 224 (517)
T ss_pred EEEEecCCccHHHHHHHHhC------------cceEEEEehh-HHHHHHHHHHhcCCc----------------------
Confidence 58999999999999988865 5789999955 588888877754322
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhc---ccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++.+-.+++.++ .+.|++++.-. +-+-.-++..+ .++++|+|.|.++=
T Consensus 225 ------------------~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 225 ------------------ADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMFP 280 (517)
T ss_pred ------------------cceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCcccC
Confidence 25667777766665543 45687776221 11111122222 35699999998763
No 216
>KOG1122|consensus
Probab=97.99 E-value=3.8e-05 Score=63.29 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=83.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC---
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~--- 78 (167)
||||+|+..|+-|.+++..++ ..+.+++.|.+..-+...++++.+.++ .+......|.++.|
T Consensus 244 RIlDmcAAPGGKTt~IAalMk----------n~G~I~AnD~n~~r~~~l~~n~~rlGv-----~ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMK----------NTGVIFANDSNENRLKSLKANLHRLGV-----TNTIVSNYDGREFPEKE 308 (460)
T ss_pred eecchhcCCCchHHHHHHHHc----------CCceEEecccchHHHHHHHHHHHHhCC-----CceEEEccCcccccccc
Confidence 899999999999999999886 478899999999999999999988886 34455555555554
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
|+. +||.+++.-+=+... +..... .+.......|+.- ...-.+++|..+.+.+++||+|++++++
T Consensus 309 ~~~-~fDRVLLDAPCSGtg-----vi~K~~---~vkt~k~~~di~~------~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 309 FPG-SFDRVLLDAPCSGTG-----VISKDQ---SVKTNKTVKDILR------YAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cCc-ccceeeecCCCCCCc-----cccccc---ccccchhHHHHHH------hHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 444 666555543333211 000000 0000000111111 1223578889999999999999997766
Q ss_pred c
Q psy889 159 H 159 (167)
Q Consensus 159 ~ 159 (167)
-
T Consensus 374 I 374 (460)
T KOG1122|consen 374 I 374 (460)
T ss_pred c
Confidence 3
No 217
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.93 E-value=4.2e-05 Score=61.24 Aligned_cols=87 Identities=7% Similarity=0.019 Sum_probs=51.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-CC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~~ 80 (167)
+|+|.+||+|.+..++.+++.... .......++|+|+++.++..++.++.-.+. .........+|...-+ +.
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~----~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKR----NKIKEINIYGIEIDPEAVALAKLNLLLHGI---DNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCH----HHHCCEEEEEEES-HHHHHHHHHHHHHTTH---HCBGCEEEES-TTTSHSCT
T ss_pred eeechhhhHHHHHHHHHHhhcccc----cccccceeEeecCcHHHHHHHHhhhhhhcc---ccccccccccccccccccc
Confidence 699999999999988887541000 000267899999999999999887654332 1112234445543332 33
Q ss_pred -CCCCceeeeeecccc
Q psy889 81 -SDSYSAYTIAFGIRN 95 (167)
Q Consensus 81 -~~~fd~~~~~~~~~~ 95 (167)
...||.+++.+|...
T Consensus 122 ~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGS 137 (311)
T ss_dssp ST--EEEEEEE--CTC
T ss_pred cccccccccCCCCccc
Confidence 688998888888754
No 218
>KOG1331|consensus
Probab=97.93 E-value=1.4e-05 Score=62.73 Aligned_cols=98 Identities=22% Similarity=0.215 Sum_probs=75.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||.|... ... +...++++|++...+.-+++.
T Consensus 48 v~~d~gCGngky~-----~~~----------p~~~~ig~D~c~~l~~~ak~~---------------------------- 84 (293)
T KOG1331|consen 48 VGLDVGCGNGKYL-----GVN----------PLCLIIGCDLCTGLLGGAKRS---------------------------- 84 (293)
T ss_pred eeeecccCCcccC-----cCC----------CcceeeecchhhhhccccccC----------------------------
Confidence 3799999997541 110 256789999998887777642
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccccc---HHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+......+|+..+|....+||..+...++||+.. -.++++++.|+++|||..++..+.
T Consensus 85 -------------------~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 85 -------------------GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred -------------------CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 1124566788888999999999999999998865 467889999999999999887766
Q ss_pred ccC
Q psy889 159 HVN 161 (167)
Q Consensus 159 ~~~ 161 (167)
...
T Consensus 146 ~~q 148 (293)
T KOG1331|consen 146 LEQ 148 (293)
T ss_pred hhc
Confidence 443
No 219
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.90 E-value=9.3e-05 Score=65.70 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=41.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCC-------------------------------CCCCCcEEEeeCChHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS-------------------------------EHCAPHVTVADINRAMLDVG 50 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~~~~D~s~~~~~~a 50 (167)
.++|.+||+|.+....+......++.... +....+++|+|+++.+++.|
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A 272 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAA 272 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHH
Confidence 68999999999998876643211110000 01134799999999999999
Q ss_pred HHHHHhccc
Q psy889 51 EQRARDLFK 59 (167)
Q Consensus 51 ~~~~~~~~~ 59 (167)
++++...+.
T Consensus 273 ~~N~~~~g~ 281 (702)
T PRK11783 273 RKNARRAGV 281 (702)
T ss_pred HHHHHHcCC
Confidence 999987765
No 220
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.88 E-value=3.4e-05 Score=63.09 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
+|||+.||+|.++..+++. ..+++|+|+++.+++.|++++...+. .++++..++.+++
T Consensus 199 ~vlDlycG~G~fsl~la~~-------------~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-------------AKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-------------SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-------------CCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEeeccch
Confidence 5899999999999999984 46799999999999999999986554 4677777766554
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=6.2e-05 Score=57.38 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=71.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+++|+|+|.|-=+..++=.. +..+++-+|....-+...+.-....+.
T Consensus 70 ~~~DIGSGaGfPGipLAI~~-----------p~~~vtLles~~Kk~~FL~~~~~eL~L---------------------- 116 (215)
T COG0357 70 RVLDIGSGAGFPGIPLAIAF-----------PDLKVTLLESLGKKIAFLREVKKELGL---------------------- 116 (215)
T ss_pred EEEEeCCCCCCchhhHHHhc-----------cCCcEEEEccCchHHHHHHHHHHHhCC----------------------
Confidence 79999999998887776444 467799999999888888887777766
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.++.++..-.+........||+|++.. +..+..++.-+...+++||.++.
T Consensus 117 -------------------~nv~i~~~RaE~~~~~~~~~D~vtsRA----va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 117 -------------------ENVEIVHGRAEEFGQEKKQYDVVTSRA----VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -------------------CCeEEehhhHhhcccccccCcEEEeeh----ccchHHHHHHHHHhcccCCcchh
Confidence 567777776666543222288887743 56666777777888888877643
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.85 E-value=0.0001 Score=63.22 Aligned_cols=88 Identities=10% Similarity=0.101 Sum_probs=56.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-----
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE----- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----- 76 (167)
+|||.|||+|.+...++..+...... .....+++|+|+++..+..++.++...... ......++...
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~---~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-----~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYF---KEVELNIYFADIDKTLLKRAKKLLGEFALL-----EINVINFNSLSYVLLN 105 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCc---ccceeeeeeechhHHHHHHHHHHHhhcCCC-----Cceeeecccccccccc
Confidence 79999999999999998876311000 001367899999999999999887654310 11111222111
Q ss_pred CCCCCCCCceeeeeecccccc
Q psy889 77 LPIESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~ 97 (167)
.+-..+.||.++..+|.-...
T Consensus 106 ~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred cccccCcccEEEeCCCccccC
Confidence 111235799999998886543
No 223
>KOG2352|consensus
Probab=97.84 E-value=6e-05 Score=63.20 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=79.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
+++|-+|||...++..+.+-. ...++.+|+|+-.++....+... -.++..|...|+..+.|+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G------------~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fe 111 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG------------FEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFE 111 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC------------CCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCC
Confidence 478999999999988887644 56799999999999988876531 235788888888888888
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+++||.+.....+ ..+-. ++-+.. +.......+.++.|+|++||+++.+.+.
T Consensus 112 dESFdiVIdkGtl-----------------Dal~~--de~a~~-------~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 112 DESFDIVIDKGTL-----------------DALFE--DEDALL-------NTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CcceeEEEecCcc-----------------ccccC--Cchhhh-------hhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 8888844433222 11100 000111 1123445678999999999999988874
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.84 E-value=0.0001 Score=58.21 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=65.2
Q ss_pred eEEeeecCCCchHHHHHHh-hccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH-hcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPGDIAFRFLNY-VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-DLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
||+-+|||.==+|..++.. .. .+..+.++|+++++++.+++-.. ..+.
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~----------~~~~v~~iD~d~~A~~~a~~lv~~~~~L-------------------- 172 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHG----------PGARVHNIDIDPEANELARRLVASDLGL-------------------- 172 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HT----------T--EEEEEESSHHHHHHHHHHHH---HH--------------------
T ss_pred eEEEEcCCCcchHHHHHHHHhC----------CCCeEEEEeCCHHHHHHHHHHHhhcccc--------------------
Confidence 7999999988777766653 22 36789999999999999998776 3332
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc-ccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.++.|...|.......-..||+|+...... .-....++|.++.++++||..+++.
T Consensus 173 --------------------~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 173 --------------------SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ---------------------SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred --------------------cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 2567888888766655456799887755332 2236889999999999999999885
No 225
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=6.1e-05 Score=58.90 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=58.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+|.|.+|..+++. ..+++++++++.+++..+++.. +.++.+.+.+|+...+|+.
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~-------------~~~v~aiEiD~~l~~~L~~~~~-------~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 33 NVLEIGPGLGALTEPLLER-------------AARVTAIEIDRRLAEVLKERFA-------PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred eEEEECCCCCHHHHHHHhh-------------cCeEEEEEeCHHHHHHHHHhcc-------cccceEEEeCchhcCcchh
Confidence 6999999999999999994 5679999999999999998765 2457889999998888775
Q ss_pred C-CCceeeeeecc
Q psy889 82 D-SYSAYTIAFGI 93 (167)
Q Consensus 82 ~-~fd~~~~~~~~ 93 (167)
- .+..++...|.
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 4 45555555554
No 226
>KOG2915|consensus
Probab=97.80 E-value=0.00014 Score=56.92 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=44.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|+|-|.|+|+++-++++.+. +.+|++-.|+.....+.|.+.++..++
T Consensus 108 vV~EsGTGSGSlShaiaraV~----------ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 108 VVLESGTGSGSLSHAIARAVA----------PTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred EEEecCCCcchHHHHHHHhhC----------cCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 799999999999999999987 689999999999999999999988776
No 227
>PRK04148 hypothetical protein; Provisional
Probab=97.78 E-value=6e-05 Score=53.30 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=33.9
Q ss_pred CeEEeeecCCCc-hHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 1 MYILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 1 ~~vLD~g~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
++|||+|||.|. ++..+.+ .+.+++++|+++..++.++++
T Consensus 18 ~kileIG~GfG~~vA~~L~~-------------~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKE-------------SGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred CEEEEEEecCCHHHHHHHHH-------------CCCEEEEEECCHHHHHHHHHh
Confidence 479999999995 7777765 378999999999999988765
No 228
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.76 E-value=3.2e-05 Score=58.72 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=31.9
Q ss_pred CccchhhHhhhhcccccccH---HHHHHHHHHhcCCCcE
Q psy889 116 ESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGR 151 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~~~~~~---~~~l~~~~~~LkpgG~ 151 (167)
..+.||+|.++.++..+++. ..++.++++.|+|+|.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 35789999999999999875 4778999999999999
No 229
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.75 E-value=9.9e-05 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=28.8
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
++|||+||++|+.+..++++.. +..+++|+|+.+.
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~----------~~~~v~avDl~~~ 59 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGG----------PAGRVVAVDLGPM 59 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTT----------TEEEEEEEESSST
T ss_pred cEEEEcCCcccceeeeeeeccc----------ccceEEEEecccc
Confidence 3799999999999999998662 3588999999875
No 230
>KOG0820|consensus
Probab=97.74 E-value=8.4e-05 Score=58.25 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=40.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
+.|||+|.|||.+|..++++ +..++++++++.|+...+++.+...
T Consensus 60 D~VLEvGPGTGnLT~~lLe~-------------~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLLEA-------------GKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred CEEEEeCCCCCHHHHHHHHh-------------cCeEEEEecCcHHHHHHHHHhcCCC
Confidence 46999999999999999984 6789999999999999999987554
No 231
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00014 Score=54.13 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=40.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
++||+.+|+|.+++..+... ...++.+|.+...+...+++.+..+.
T Consensus 46 ~~LDlFAGSGaLGlEAlSRG------------A~~~~~vE~~~~a~~~l~~N~~~l~~ 91 (187)
T COG0742 46 RVLDLFAGSGALGLEALSRG------------AARVVFVEKDRKAVKILKENLKALGL 91 (187)
T ss_pred EEEEecCCccHhHHHHHhCC------------CceEEEEecCHHHHHHHHHHHHHhCC
Confidence 79999999999999988843 45799999999999999999987763
No 232
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.68 E-value=6.6e-05 Score=56.95 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=60.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.++|+|||.|......+-... -.+++|+|+.+...+.|+...+.... ++.
T Consensus 45 vF~DlGSG~G~~v~~aal~~~-----------~~~~~GIEi~~~~~~~a~~~~~~~~~------~~~------------- 94 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTG-----------CKKSVGIEILPELHDLAEELLEELKK------RMK------------- 94 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH-------------SEEEEEE-SHHHHHHHHHHHHHHHH------HHH-------------
T ss_pred EEEECCCCCCHHHHHHHHHcC-----------CcEEEEEEechHHHHHHHHHHHHHHH------HHH-------------
Confidence 579999999999888776552 34599999999998888765543211 000
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCC---ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.......++.+..+|+.+.... -...|+|++++..- -+++...+.+...-||+|.+++.
T Consensus 95 -------------~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 95 -------------HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -------------HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred -------------HhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 0000013456666665432211 12357777766432 34566677888889999988875
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.63 E-value=0.00022 Score=50.35 Aligned_cols=46 Identities=11% Similarity=-0.020 Sum_probs=39.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
.|+|+|||.|..+..++... +..+++++|.++.+.+.++++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-----------~~~~v~~~E~~~~~~~~l~~~~~~n~ 46 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-----------AEGRVIAFEPLPDAYEILEENVKLNN 46 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-----------CCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 48999999999999998876 35689999999999999999886543
No 234
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.61 E-value=0.00018 Score=56.44 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=63.5
Q ss_pred eEEeeecCCC--chHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC
Q psy889 2 YILFYLVFPG--DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (167)
Q Consensus 2 ~vLD~g~G~G--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 79 (167)
-+||+|||-= ...-.+++... +.++++-+|.++-.+..++..+.....
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~----------P~aRVVYVD~DPvv~ah~ralL~~~~~-------------------- 120 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVA----------PDARVVYVDNDPVVLAHARALLADNPR-------------------- 120 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-----------TT-EEEEEESSHHHHHCCHHHHTT-TT--------------------
T ss_pred eEEEcccCCCCCCCHhHHHHhhC----------CCceEEEECCCchHHHHHHhhhcCCCC--------------------
Confidence 3799999954 34555666664 689999999999999999987754321
Q ss_pred CCCCCceeeeeeccccccCCCCceEEeecccCCCC-----------CCccchhhHhhhhccccccc---HHHHHHHHHHh
Q psy889 80 ESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-----------IESDSYSAYTIAFGIRNVTR---IDKALSEAYRV 145 (167)
Q Consensus 80 ~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~ 145 (167)
+...++.+|+.+.. +.-...=.++...++|++++ ...++..++..
T Consensus 121 ---------------------g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~ 179 (267)
T PF04672_consen 121 ---------------------GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDA 179 (267)
T ss_dssp ---------------------SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCC
T ss_pred ---------------------ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHh
Confidence 23556666654321 10011112334556677654 78999999999
Q ss_pred cCCCcEEEEEeecccC
Q psy889 146 LKPGGRFLCLEFSHVN 161 (167)
Q Consensus 146 LkpgG~l~~~~~~~~~ 161 (167)
|.||++|.++..+...
T Consensus 180 lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 180 LAPGSYLAISHATDDG 195 (267)
T ss_dssp S-TT-EEEEEEEB-TT
T ss_pred CCCCceEEEEecCCCC
Confidence 9999999998876543
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00021 Score=53.50 Aligned_cols=102 Identities=17% Similarity=0.043 Sum_probs=70.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.||||+|+|+|-.+.+.+... ...++..|+.+......+-+....+.
T Consensus 81 krVLd~gagsgLvaIAaa~aG------------A~~v~a~d~~P~~~~ai~lNa~angv--------------------- 127 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAG------------AAEVVAADIDPWLEQAIRLNAAANGV--------------------- 127 (218)
T ss_pred ceeeecccccChHHHHHHHhh------------hHHHHhcCCChHHHHHhhcchhhccc---------------------
Confidence 489999999999999888765 46788999998877777766554332
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCC-CcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~ 159 (167)
.+.+...|. .. .+..+|+++...++..-+...+++. +++.|+. |-.+++.+...
T Consensus 128 ---------------------~i~~~~~d~--~g-~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 128 ---------------------SILFTHADL--IG-SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred ---------------------eeEEeeccc--cC-CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 344444443 22 5677999999988877777788888 5555554 44444444443
Q ss_pred c
Q psy889 160 V 160 (167)
Q Consensus 160 ~ 160 (167)
+
T Consensus 183 ~ 183 (218)
T COG3897 183 A 183 (218)
T ss_pred C
Confidence 3
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.54 E-value=1.3e-05 Score=54.07 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=38.0
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
||+|+..|..+..+++.+... ...+++++|..+. .+..++..++...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~--------~~~~~~~vD~~~~-~~~~~~~~~~~~~------------------------ 47 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN--------GRGKLYSVDPFPG-DEQAQEIIKKAGL------------------------ 47 (106)
T ss_dssp ----------------------------------EEEESS-------------GGG------------------------
T ss_pred Ccccccccccccccccccccc--------ccCCEEEEECCCc-ccccchhhhhcCC------------------------
Confidence 689999999999999877410 0147999999886 2222322222221
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCC-C-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++.+...+..+. + +...++|+++.-. -|..+.....+..+.+.|+|||.+++-+
T Consensus 48 ----------------~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 48 ----------------SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----------------BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----------------CCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 13466666655332 1 1135677775522 1334556777889999999999998854
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.44 E-value=0.00028 Score=50.18 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=41.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
+|+|+|||.|+++..++..+.... .+.+++++|.++..++.+.++.+...
T Consensus 28 ~vvD~GsG~GyLs~~La~~l~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 28 TVVDLGSGKGYLSRALAHLLCNSS-------PNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred EEEEeCCChhHHHHHHHHHHHhcC-------CCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 699999999999999998553211 37889999999999999999887654
No 238
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=97.40 E-value=0.00088 Score=52.22 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=79.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccC-CCCCCcccccccccccCC--
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV-PVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~d~~~l~-- 78 (167)
+|+|+|+|+|.++..+++.+....++-. ...+++-+|.|+.+.+..++++...... ......++| ..+..++|
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~~---~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p~~ 96 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEVY---KRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVPFP 96 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHHH---TTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS-CC
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhhh---hcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhcccCC
Confidence 7999999999999999999863211000 2468999999999999988887643100 011235667 33554443
Q ss_pred ---CCCCCCceeeeeeccccccC--------C---CCceEEeecccCCCCCCccchhhHhh-----------hhcccccc
Q psy889 79 ---IESDSYSAYTIAFGIRNIDI--------P---NPRLRFLEANAEELPIESDSYSAYTI-----------AFGIRNVT 133 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~~~~--------~---~~~~~~~~~d~~~~~~~~~~~D~v~~-----------~~~~~~~~ 133 (167)
+.++-||...+.--.+.... . +.++.+... +........++. ......-.
T Consensus 97 ~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~~~~~~g~~~Ei~~ 171 (252)
T PF02636_consen 97 GFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLS-----PLSTPSLEEYLPQLGPRLPKLPEGYRIEIPT 171 (252)
T ss_dssp EEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEE-----SSSSTCHCCCTTCCGGG-----TT-EEEE-H
T ss_pred EEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeC-----CCCCHHHHHHHHHhhHhhccCCCCCEEEECH
Confidence 55555554433332221100 0 111222111 111101111111 11111223
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 134 RIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 134 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.....++++.+.++.||.++++|++.+.
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~~ 199 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYPA 199 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCCC
Confidence 5678889999999888999999999843
No 239
>KOG2798|consensus
Probab=97.39 E-value=0.00037 Score=55.72 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=78.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||=.|||.|.++..++.. +..+.|=+.|--|+-...-.+..... ..+..=.||-.
T Consensus 153 ~iLvPGaGlGRLa~dla~~-------------G~~~qGNEfSy~Mli~S~FiLN~~~~-----------~nq~~IYPfIh 208 (369)
T KOG2798|consen 153 RILVPGAGLGRLAYDLACL-------------GFKCQGNEFSYFMLICSSFILNYCKQ-----------ENQFTIYPFIH 208 (369)
T ss_pred eEEecCCCchhHHHHHHHh-------------cccccccHHHHHHHHHHHHHHHhhcc-----------CCcEEEEeeee
Confidence 7899999999999999873 56677778877776555444422111 11111123333
Q ss_pred CCCceeeeeeccccccCCC----------CceEEeecccCCCC---CCccchhhHhhhhcccccccHHHHHHHHHHhcCC
Q psy889 82 DSYSAYTIAFGIRNIDIPN----------PRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkp 148 (167)
..-.....+..+|.+..|. +.+....+|.-.+. -..+.||+|+..+.+..-.++-..++.|+.+|||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~ 288 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP 288 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC
Confidence 3333333344444433111 22333445544332 3346799998877666667788899999999999
Q ss_pred CcEEE
Q psy889 149 GGRFL 153 (167)
Q Consensus 149 gG~l~ 153 (167)
||+++
T Consensus 289 GGvWi 293 (369)
T KOG2798|consen 289 GGVWI 293 (369)
T ss_pred CcEEE
Confidence 99986
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.38 E-value=0.0017 Score=49.69 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=64.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+||-+|+.+|....++++-.. +.+.+++++.|+......-.-.+..
T Consensus 75 skVLYLGAasGTTVSHvSDIvg----------~~G~VYaVEfs~r~~rdL~~la~~R----------------------- 121 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVG----------PDGVVYAVEFSPRSMRDLLNLAKKR----------------------- 121 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHS-----------------------
T ss_pred CEEEEecccCCCccchhhhccC----------CCCcEEEEEecchhHHHHHHHhccC-----------------------
Confidence 3799999999999999999886 4788999999996655554333322
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC---CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.|+.-+..|..... ..-...|+|++-.. .-.+.+-+..++...||+||.+++.
T Consensus 122 --------------------~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 122 --------------------PNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp --------------------TTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------CceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 34555555554321 11235666655221 1233455567888899999999874
No 241
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.35 E-value=0.00016 Score=56.04 Aligned_cols=31 Identities=42% Similarity=0.780 Sum_probs=29.4
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+|+.+|+++|||++++||.+++++++|++++
T Consensus 104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d 134 (238)
T COG2226 104 EFVVGDAENLPFPDNSFDAVTISFGLRNVTD 134 (238)
T ss_pred EEEEechhhCCCCCCccCEEEeeehhhcCCC
Confidence 5889999999999999999999999999986
No 242
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.34 E-value=0.00033 Score=54.82 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|||+--. .++.+.. ...+++..|.++..++..++.++..+... =.+..++++ ..+.
T Consensus 59 ~llDiGsGPtiy--~~lsa~~----------~f~~I~l~dy~~~N~~el~kWl~~~~a~D-Ws~~~~~v~-~lEg----- 119 (256)
T PF01234_consen 59 TLLDIGSGPTIY--QLLSACE----------WFEEIVLSDYSEQNREELEKWLRKEGAFD-WSPFWKYVC-ELEG----- 119 (256)
T ss_dssp EEEEES-TT--G--GGTTGGG----------TEEEEEEEESSHHHHHHHHHHHTT-TS---THHHHHHHH-HHTT-----
T ss_pred EEEEeCCCcHHH--hhhhHHH----------hhcceEEeeccHhhHHHHHHHHCCCCCCC-ccHHHHHHH-hccC-----
Confidence 689999998432 2222222 25679999999999999998876432100 000111111 1111
Q ss_pred CCCceeeeeeccccccCCCCce-EEeecccCCC-CCC-----ccchhhHhhhhcccc----cccHHHHHHHHHHhcCCCc
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRL-RFLEANAEEL-PIE-----SDSYSAYTIAFGIRN----VTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~-~~~~~d~~~~-~~~-----~~~~D~v~~~~~~~~----~~~~~~~l~~~~~~LkpgG 150 (167)
..-..-..+..+| ..+ .++..|..+. |.. +..||+|++.+.+.. .....++++++.+.|||||
T Consensus 120 ~~~~~~e~e~~lR------~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG 193 (256)
T PF01234_consen 120 KREKWEEKEEKLR------RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG 193 (256)
T ss_dssp SSSGHHHHHHHHH------HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE
T ss_pred CcchhhhHHHHHH------HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence 0000000000111 122 2444454432 222 234999988776653 3446788999999999999
Q ss_pred EEEEEeecc
Q psy889 151 RFLCLEFSH 159 (167)
Q Consensus 151 ~l~~~~~~~ 159 (167)
.|++.....
T Consensus 194 ~Lil~~~l~ 202 (256)
T PF01234_consen 194 HLILAGVLG 202 (256)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEEcC
Confidence 999976543
No 243
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00065 Score=55.81 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCC-C----------------------------CCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPP-N----------------------------TLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~-~----------------------------~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
.++|.-||+|.+.+..+.....-.| . ....+.. .++|+|+++.+++.|+.
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~-~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP-IIYGSDIDPRHIEGAKA 272 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc-eEEEecCCHHHHHHHHH
Confidence 4789999999999887664421110 0 0000011 47899999999999999
Q ss_pred HHHhcccCCCCCCcccccccccccCCCCCCCCceeeee
Q psy889 53 RARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~ 90 (167)
+++..+. .+.++|..+|+..++-+.+.++.+++.
T Consensus 273 NA~~AGv----~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 273 NARAAGV----GDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHhcCC----CceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 9999987 334444444444443222444444433
No 244
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.30 E-value=0.00072 Score=50.52 Aligned_cols=96 Identities=6% Similarity=-0.044 Sum_probs=67.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.+.|+|+|+|-++...+.+ ..++++++.++.....|++++.-.+.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-------------A~rViAiE~dPk~a~~a~eN~~v~g~---------------------- 79 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-------------AERVIAIEKDPKRARLAEENLHVPGD---------------------- 79 (252)
T ss_pred ceeeccCCcchHHHHHHhh-------------hceEEEEecCcHHHHHhhhcCCCCCC----------------------
Confidence 4689999999999887764 35799999999999999988644343
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccc--ccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--NVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.++..|.....+ ...|+|+|...-. -....-.++..+.+.||-++.++
T Consensus 80 -------------------~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 80 -------------------VNWEVVVGDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -------------------cceEEEecccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 567788888777655 3468888854211 11122345556666778777765
No 245
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0013 Score=53.55 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=91.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc---CC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE---LP 78 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---l~ 78 (167)
.++|+|+|.|.++..+++.+..+.++-- ...++.-+++|+.....-+++++.... +.-+++|...-..+ +-
T Consensus 80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~~---~~~~~~iiE~s~~L~~~Qk~~L~~~~~---~~~~~~~~e~~p~~~~~i~ 153 (370)
T COG1565 80 KLVEIGAGRGTLASDILRTLRRLYPELY---EALSYYIIEPSPELRARQKETLKATED---LIRWVEWVEDLPKKFPGIV 153 (370)
T ss_pred eEEEeCCCcChHHHHHHHHHHHhCHHHH---hcceEEEEecCHHHHHHHHHHHhcccc---chhHHHHHHhccccCceEE
Confidence 5899999999999999998743221111 267899999999999999988876531 23345555444444 33
Q ss_pred CCCCCCceeeeeeccccccCCCCceEEeecccCC-CCCC---ccchhhHhhhh---------cccccccHHHHHHHHHHh
Q psy889 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE-LPIE---SDSYSAYTIAF---------GIRNVTRIDKALSEAYRV 145 (167)
Q Consensus 79 ~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~---~~~~D~v~~~~---------~~~~~~~~~~~l~~~~~~ 145 (167)
|.++-||...++--+++-.---.++.. .+.+. ..+. .+.+|-.+... .+...+....+++.+.+.
T Consensus 154 ~~NElfDAlPv~q~~~~~~~~~Er~~~--~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~ 231 (370)
T COG1565 154 VSNELFDALPVEQFIRTKGLFVERVVV--LDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAER 231 (370)
T ss_pred EechhhccccceeEeccCceEEEEeec--cCcccceeeccccccchhhhccCcccccccCCceeeeCHHHHHHHHHHHHH
Confidence 889999988877666542210001110 01100 0010 11222222211 111223345788999999
Q ss_pred cCCCcEEEEEeecccCCc
Q psy889 146 LKPGGRFLCLEFSHVNNS 163 (167)
Q Consensus 146 LkpgG~l~~~~~~~~~~~ 163 (167)
|+. |.++++|++++..+
T Consensus 232 L~~-G~~l~iDYG~~~~~ 248 (370)
T COG1565 232 LER-GVFLFIDYGYPAEE 248 (370)
T ss_pred Hhh-CeEEEEecCCcccc
Confidence 988 88888899986543
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.23 E-value=0.00062 Score=48.48 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=47.8
Q ss_pred cEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCC
Q psy889 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI 115 (167)
Q Consensus 36 ~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 115 (167)
+++++|+.+++++.++++++..+.. .+++++.++=+++. . ..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~l~---------------------------------~-~i 42 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHENLD---------------------------------E-YI 42 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGGGG---------------------------------G-T-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHHHH---------------------------------h-hC
Confidence 4899999999999999999877651 13333333322221 0 01
Q ss_pred CccchhhHhhhhccc---------ccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 116 ESDSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
+.+.+|+++.+.+.- .-...-.+++.+.+.|+|||.+.++.+
T Consensus 43 ~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 43 PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp -S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 112344443332211 112346788999999999999998654
No 247
>KOG3115|consensus
Probab=97.23 E-value=0.00092 Score=50.45 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=40.5
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+.|||||-|++...++..+ +..-+.|.++.....+..+++++....
T Consensus 64 faDIGCGyGGLlv~Lsp~f-----------PdtLiLGmEIR~KVsdYVk~RI~ALR~ 109 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKF-----------PDTLILGMEIRDKVSDYVKERIQALRR 109 (249)
T ss_pred EEeeccCccchhhhccccC-----------ccceeeeehhhHHHHHHHHHHHHHHhc
Confidence 6899999999999999988 477799999999999999999976553
No 248
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.21 E-value=0.00092 Score=54.32 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=27.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
+++||+||++|+.+..+++ .+.+++++|..+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~-------------rG~~V~AVD~g~ 243 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVR-------------RGMFVTAVDNGP 243 (357)
T ss_pred CEEEEeCCCCcHHHHHHHH-------------cCCEEEEEechh
Confidence 5899999999999999988 477999999543
No 249
>KOG2187|consensus
Probab=97.17 E-value=0.00039 Score=58.77 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=47.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
.+||++||||.++..+++. ..+++|+++++++++.|+.++...+. .|.+|+++-++.+
T Consensus 386 ~llDv~CGTG~iglala~~-------------~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 386 TLLDVCCGTGTIGLALARG-------------VKRVIGVEISPDAVEDAEKNAQINGI-----SNATFIVGQAEDL 443 (534)
T ss_pred EEEEEeecCCceehhhhcc-------------ccceeeeecChhhcchhhhcchhcCc-----cceeeeecchhhc
Confidence 5799999999999999984 56799999999999999998876554 4667777755553
No 250
>KOG2730|consensus
Probab=97.11 E-value=0.00023 Score=54.23 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=59.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC----
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l---- 77 (167)
+|+|..||.|+.+..++. .+..++++|+++.-+..|+.+++..++ |. +++|++||...+
T Consensus 97 ~iidaf~g~gGntiqfa~-------------~~~~VisIdiDPikIa~AkhNaeiYGI---~~-rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFAL-------------QGPYVIAIDIDPVKIACARHNAEVYGV---PD-RITFICGDFLDLASKL 159 (263)
T ss_pred hhhhhhhcCCchHHHHHH-------------hCCeEEEEeccHHHHHHHhccceeecC---Cc-eeEEEechHHHHHHHH
Confidence 578999999999888876 367899999999999999999998887 34 899999997765
Q ss_pred CCCCCCCceeeeeecc
Q psy889 78 PIESDSYSAYTIAFGI 93 (167)
Q Consensus 78 ~~~~~~fd~~~~~~~~ 93 (167)
.|+-.+.|.+-++++-
T Consensus 160 q~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 160 KADKIKYDCVFLSPPW 175 (263)
T ss_pred hhhhheeeeeecCCCC
Confidence 3555555555555444
No 251
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.10 E-value=0.0023 Score=48.60 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=39.4
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
|.|+||--|.++..+++.. ...+++++|+++.-++.|++++...+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-----------~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-----------KAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-----------SEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CceeccchhHHHHHHHhcC-----------CCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 6899999999999999865 256799999999999999999987765
No 252
>KOG1540|consensus
Probab=97.07 E-value=0.0007 Score=52.78 Aligned_cols=31 Identities=55% Similarity=1.023 Sum_probs=29.4
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+|+++|++.|||++++||.+++.+++|+.+.
T Consensus 162 ~w~~~dAE~LpFdd~s~D~yTiafGIRN~th 192 (296)
T KOG1540|consen 162 EWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH 192 (296)
T ss_pred EEEeCCcccCCCCCCcceeEEEecceecCCC
Confidence 5899999999999999999999999999985
No 253
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.06 E-value=0.0045 Score=46.52 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 134 RIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 134 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
...++...+++.|||||.+++.|+...-
T Consensus 144 ~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 144 TAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred hHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 3577888999999999999998876443
No 254
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.05 E-value=0.002 Score=50.52 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=48.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
..|+|+|+|.|.+|..+++. +.+++++|+++.+++..++++. ..++++++.+|+.++...
T Consensus 32 ~~VlEiGpG~G~lT~~L~~~-------------~~~v~~vE~d~~~~~~L~~~~~-------~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 32 DTVLEIGPGPGALTRELLKR-------------GKRVIAVEIDPDLAKHLKERFA-------SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp SEEEEESSTTSCCHHHHHHH-------------SSEEEEEESSHHHHHHHHHHCT-------TCSSEEEEES-TTTSCGG
T ss_pred CEEEEeCCCCccchhhHhcc-------------cCcceeecCcHhHHHHHHHHhh-------hcccceeeecchhccccH
Confidence 36999999999999999885 4679999999999999998765 234677888887776543
Q ss_pred C
Q psy889 81 S 81 (167)
Q Consensus 81 ~ 81 (167)
.
T Consensus 92 ~ 92 (262)
T PF00398_consen 92 D 92 (262)
T ss_dssp G
T ss_pred H
Confidence 3
No 255
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.04 E-value=0.0041 Score=51.45 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 133 TRIDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 133 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.|...+|+-=.+-|+|||+++++-.+.++
T Consensus 214 ~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 214 ADLAGFLRARAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEecCCC
Confidence 34555565556789999999998888764
No 256
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.00069 Score=48.99 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=42.6
Q ss_pred eEEeecccCCCCCCccchhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 103 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
+++++-.....++.+.+.|+|++.+++.|+. ....++++++++|||||+|.+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 4444433445678899999999999998765 46788899999999999998854
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.97 E-value=0.0036 Score=51.30 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=65.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||-+|.|.|--.+.+.++- ...+++-+|.+++|++.++.+.--... ..
T Consensus 292 ~vLvlGGGDGLAlRellkyP-----------~~~qI~lVdLDP~miela~~~~vlr~~--------------------N~ 340 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYP-----------QVEQITLVDLDPRMIELASHATVLRAL--------------------NQ 340 (508)
T ss_pred eEEEEcCCchHHHHHHHhCC-----------CcceEEEEecCHHHHHHhhhhhHhhhh--------------------cc
Confidence 68899999998888887643 267899999999999999944321111 11
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC-CCCccchhhHhhhhcccccccHHH-----HHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDK-----ALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~~~~~~~~-----~l~~~~~~LkpgG~l~~~ 155 (167)
++|+ ++++.+...|..++ .-....||.|+.-.---..+.+.+ .-.-+.+.|+++|.+++-
T Consensus 341 ~sf~--------------dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 341 GSFS--------------DPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred CCcc--------------CCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 2222 24555555555442 222345777665321111122222 234577889999998873
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0022 Score=52.21 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|.|.|....+...-+. ..-.++-++.|+..-+......++...
T Consensus 116 siLDvG~GPgtgl~A~n~i~P----------dl~sa~ile~sp~lrkV~~tl~~nv~t---------------------- 163 (484)
T COG5459 116 SILDVGAGPGTGLWALNDIWP----------DLKSAVILEASPALRKVGDTLAENVST---------------------- 163 (484)
T ss_pred hhhccCCCCchhhhhhcccCC----------CchhhhhhccCHHHHHHHHHHHhhccc----------------------
Confidence 589999999998887766553 223355566676654444433332211
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhccccc---ccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+- .+..+..+ ..|..+++. .+.|++++...-+... ..+...+..++..+.|||.|+++|-+
T Consensus 164 --------~~----td~r~s~v---t~dRl~lp~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 164 --------EK----TDWRASDV---TEDRLSLPA-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred --------cc----CCCCCCcc---chhccCCCc-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 00001111 222223332 3557777765544322 23556889999999999999999866
Q ss_pred cc
Q psy889 159 HV 160 (167)
Q Consensus 159 ~~ 160 (167)
.|
T Consensus 228 tp 229 (484)
T COG5459 228 TP 229 (484)
T ss_pred Cc
Confidence 54
No 259
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.82 E-value=0.00025 Score=48.27 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=29.7
Q ss_pred chhhHhhhhccccc------ccHHHHHHHHHHhcCCCcEEEE
Q psy889 119 SYSAYTIAFGIRNV------TRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 119 ~~D~v~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.||+|+|..+..|+ ..++++|+++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 38999998877665 3578999999999999999998
No 260
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.74 E-value=0.0015 Score=55.30 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=36.9
Q ss_pred CCCCCccchhhHhhhhcccccc---cHHHHHHHHHHhcCCCcEEEEEee
Q psy889 112 ELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 112 ~~~~~~~~~D~v~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
.++..+-+||++-+...+.... ++..++-++-|+|+|||.+++-|.
T Consensus 420 ~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 420 AFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred ccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 3455668899998887776554 478889999999999999999663
No 261
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.024 Score=42.91 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=29.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
++|+|+|+..|+-+..+++.+. ....++++|+.+
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~----------~~~~ivavDi~p 80 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLG----------AGGKIVAVDILP 80 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhC----------CCCcEEEEECcc
Confidence 5899999999999999999885 356699999866
No 262
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.61 E-value=0.0081 Score=48.06 Aligned_cols=82 Identities=9% Similarity=-0.026 Sum_probs=46.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccccc-----
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE----- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----- 76 (167)
++||||+|..-+--.+.... .+.+++|+|+++.+++.|+++++.. +.-+.+++.....-..
T Consensus 105 ~glDIGTGAscIYpLLg~~~-----------~~W~fvaTdID~~sl~~A~~nv~~N---~~L~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKL-----------YGWSFVATDIDPKSLESARENVERN---PNLESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHH-----------H--EEEEEES-HHHHHHHHHHHHHT----T-TTTEEEEE--ST-SSTTT
T ss_pred EeecCCccHHHHHHHHhhhh-----------cCCeEEEecCCHHHHHHHHHHHHhc---cccccceEEEEcCCccccchh
Confidence 68999999987643443333 2789999999999999999999754 1235566665443222
Q ss_pred CCCCCCCCceeeeeecccccc
Q psy889 77 LPIESDSYSAYTIAFGIRNID 97 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~~~ 97 (167)
+.-..+.||+..+.+|...-.
T Consensus 171 i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 171 IIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp STT--S-EEEEEE-----SS-
T ss_pred hhcccceeeEEecCCccccCh
Confidence 224457899999999986543
No 263
>KOG2198|consensus
Probab=96.51 E-value=0.029 Score=45.90 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=36.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++|||+|+..|+-+..+++.+...+ ..+.+++=|.+..-+.......
T Consensus 157 ~~VLDmCAAPG~Kt~qLLeal~~~~-------~~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 157 DKVLDMCAAPGGKTAQLLEALHKDP-------TRGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred CeeeeeccCCCccHHHHHHHHhcCC-------CCCeeEecccCHHHHHHHHHHH
Confidence 4799999999999999999875321 1347899999888777776655
No 264
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.39 E-value=0.005 Score=50.14 Aligned_cols=162 Identities=11% Similarity=0.001 Sum_probs=71.8
Q ss_pred CeEEeeecCCCchHHHHHHhhcc-----CCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc--cCCCCCCcccccccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDK-----LPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEAN 73 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~d 73 (167)
++|+|+||.+|..++.+...+-. ......+.++..+++--|....--...-+.+.... ....+.-.+..+.++
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgS 97 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGS 97 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCch
Confidence 47999999999998887765310 00000111235678888874432222211121110 000011234445566
Q ss_pred cccCCCCCCCCceeeeeeccccccC-CCCceEE--eecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCc
Q psy889 74 AEELPIESDSYSAYTIAFGIRNIDI-PNPRLRF--LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 150 (167)
Q Consensus 74 ~~~l~~~~~~fd~~~~~~~~~~~~~-~~~~~~~--~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG 150 (167)
+.+=-|+.++.+++..+..++=.-. |..-..- ...+-..+.........|...+.-..-.|+..+|+-=.+-|+|||
T Consensus 98 Fy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG 177 (334)
T PF03492_consen 98 FYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGG 177 (334)
T ss_dssp TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCc
Confidence 6666688888888888877765431 1110000 000000011111111222222221223456666766677899999
Q ss_pred EEEEEeecccCC
Q psy889 151 RFLCLEFSHVNN 162 (167)
Q Consensus 151 ~l~~~~~~~~~~ 162 (167)
+++++-++.++.
T Consensus 178 ~mvl~~~gr~~~ 189 (334)
T PF03492_consen 178 RMVLTFLGRDEE 189 (334)
T ss_dssp EEEEEEEE-STS
T ss_pred EEEEEEeecccc
Confidence 999998888773
No 265
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0042 Score=47.93 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=61.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++||+|+.||+++--+++.. ..+++++|.....++.--+.-
T Consensus 82 v~LDiGsSTGGFTd~lLq~g------------Ak~VyavDVG~~Ql~~kLR~d--------------------------- 122 (245)
T COG1189 82 VVLDIGSSTGGFTDVLLQRG------------AKHVYAVDVGYGQLHWKLRND--------------------------- 122 (245)
T ss_pred EEEEecCCCccHHHHHHHcC------------CcEEEEEEccCCccCHhHhcC---------------------------
Confidence 68999999999999999854 568999999876665543221
Q ss_pred CCCceeeeeeccccccCCCCceE-EeecccCCCCC--CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLR-FLEANAEELPI--ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~--~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.++. +...+...+.. -....|+++|-.+ +-....+|..+..++++++.++..
T Consensus 123 -------------------~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS---FISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 123 -------------------PRVIVLERTNVRYLTPEDFTEKPDLIVIDVS---FISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred -------------------CcEEEEecCChhhCCHHHcccCCCeEEEEee---hhhHHHHHHHHHHhcCCCceEEEE
Confidence 2332 23334433221 0124567766432 335677888899999999888763
No 266
>KOG1709|consensus
Probab=96.30 E-value=0.014 Score=44.64 Aligned_cols=100 Identities=13% Similarity=0.061 Sum_probs=67.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|||++|=|-|-..-.+-++ +..+-+-++..+..+...+...-..
T Consensus 104 rvLnVGFGMgIidT~iQe~------------~p~~H~IiE~hp~V~krmr~~gw~e------------------------ 147 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEA------------PPDEHWIIEAHPDVLKRMRDWGWRE------------------------ 147 (271)
T ss_pred eEEEeccchHHHHHHHhhc------------CCcceEEEecCHHHHHHHHhccccc------------------------
Confidence 7999998887665554332 2556777888888877776543211
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.++....+.-+++ .+.++.||-|+---.-....++....+.+.+.|||+|.+-+.
T Consensus 148 ------------------k~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 148 ------------------KENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ------------------ccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 24677777655553 255677887754322244567888888999999999998663
No 267
>PRK11524 putative methyltransferase; Provisional
Probab=96.07 E-value=0.014 Score=46.30 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=37.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
.|||..+|+|..+.+..+ .+-+++|+|++++.++.|++|+..
T Consensus 211 ~VLDPF~GSGTT~~AA~~-------------lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKA-------------SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred EEEECCCCCcHHHHHHHH-------------cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 699999999999888766 378899999999999999999864
No 268
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.064 Score=40.66 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=35.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+||=+|+.+|....++++-.+ .+.+++++.|+......-.-.+
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~-----------~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVG-----------EGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred EEEEeeccCCCcHhHHHhccC-----------CCcEEEEEecchhHHHHHHHHH
Confidence 689999999999999998774 5789999999988766655544
No 269
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.99 E-value=0.015 Score=45.24 Aligned_cols=47 Identities=11% Similarity=-0.040 Sum_probs=36.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+|+|+|||-==++..++... ++..|+|.|++..+++....-....+.
T Consensus 108 sVlDigCGlNPlalp~~~~~-----------~~a~Y~a~DID~~~ve~l~~~l~~l~~ 154 (251)
T PF07091_consen 108 SVLDIGCGLNPLALPWMPEA-----------PGATYIAYDIDSQLVEFLNAFLAVLGV 154 (251)
T ss_dssp EEEEET-TTCHHHHHTTTSS-----------TT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred hhhhhhccCCceehhhcccC-----------CCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence 79999999977777666543 367999999999999999988776654
No 270
>KOG3201|consensus
Probab=95.97 E-value=0.0046 Score=45.18 Aligned_cols=106 Identities=14% Similarity=-0.022 Sum_probs=67.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||+|+|--.++-.+..... +...+..+|-++.+++..++.....+..+
T Consensus 32 ~ilelgggft~laglmia~~a----------~~~~v~ltdgne~svrnv~ki~~~n~~s~-------------------- 81 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKA----------PDSSVWLTDGNEESVRNVEKIRNSNMASS-------------------- 81 (201)
T ss_pred HHHHhcCchhhhhhhheeeec----------CCceEEEecCCHHHHHHHHHHHhcccccc--------------------
Confidence 688998886555544433222 47789999999999998887664322100
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccC--CCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
..+...+..+.. +.......||.|+|+..+........+.+.|+++|+|.|.-++.
T Consensus 82 ------------------~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 82 ------------------LTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred ------------------cceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 012222222111 11233457999999876555555677889999999999986663
No 271
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.77 E-value=0.029 Score=44.36 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=54.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~- 79 (167)
|+|+|+.||.|.++..+.+.. ...+.++|+++.+++..+.+.... ...+|++++..
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G------------~~~v~a~e~~~~a~~~~~~N~~~~-----------~~~~Di~~~~~~ 57 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG------------FEIVAANEIDKSAAETYEANFPNK-----------LIEGDITKIDEK 57 (275)
T ss_pred CcEEEEccCcchHHHHHHHcC------------CEEEEEEeCCHHHHHHHHHhCCCC-----------CccCccccCchh
Confidence 689999999999988887632 234678999999999888775421 45677777652
Q ss_pred C-CCCCceeeeeecccccc
Q psy889 80 E-SDSYSAYTIAFGIRNID 97 (167)
Q Consensus 80 ~-~~~fd~~~~~~~~~~~~ 97 (167)
+ ...+|.+..+++=..+-
T Consensus 58 ~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 58 DFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred hcCCCCCEEEeCCCChhhh
Confidence 2 45688888887765554
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.69 E-value=0.023 Score=46.31 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=58.7
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 83 (167)
.-+| |.|+++..+++++ +++++++|.+++-.+.|++.-...-
T Consensus 173 ~G~G-GlGh~avQ~Aka~------------ga~Via~~~~~~K~e~a~~lGAd~~------------------------- 214 (339)
T COG1064 173 VGAG-GLGHMAVQYAKAM------------GAEVIAITRSEEKLELAKKLGADHV------------------------- 214 (339)
T ss_pred ECCc-HHHHHHHHHHHHc------------CCeEEEEeCChHHHHHHHHhCCcEE-------------------------
Confidence 3445 6778888888877 7999999999999999986532211
Q ss_pred CceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 84 fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
+...+......-.+.+|+++.. + . ...+....+.|++||.++++-.-
T Consensus 215 ---------------------i~~~~~~~~~~~~~~~d~ii~t-----v-~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 215 ---------------------INSSDSDALEAVKEIADAIIDT-----V-G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------------------EEcCCchhhHHhHhhCcEEEEC-----C-C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1111111111111237777653 2 2 66778889999999999987655
No 273
>PRK13699 putative methylase; Provisional
Probab=95.54 E-value=0.036 Score=42.66 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=37.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.|||..||+|..+.+..+ .+-+++|+|+++..++.+.+|+...
T Consensus 166 ~vlDpf~Gsgtt~~aa~~-------------~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQ-------------SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred EEEeCCCCCCHHHHHHHH-------------cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 699999999999888766 3678999999999999999998654
No 274
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.53 E-value=0.072 Score=41.33 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCC-
Q psy889 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE- 112 (167)
Q Consensus 34 ~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~- 112 (167)
..+++++|+++.+++..++..+..+. ++.....|+..
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~~~gl------------------------------------------~i~~~~~DlR~~ 104 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAEEEGL------------------------------------------PIEAVHYDLRDP 104 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHHHHT--------------------------------------------EEEE---TTS-
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCC------------------------------------------ceEEEEeccccc
Confidence 67899999999999999998887775 36666666654
Q ss_pred CC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecccCCcc
Q psy889 113 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 164 (167)
Q Consensus 113 ~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 164 (167)
+| .-.+.||++++-=. .-...+.-.+++..+.||..|-..+..+++.+.++
T Consensus 105 LP~~~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 105 LPEELRGKFDVFFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp --TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred CCHHHhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence 33 23577888866211 11245677788999999887755555777766443
No 275
>KOG4589|consensus
Probab=95.52 E-value=0.18 Score=37.88 Aligned_cols=32 Identities=19% Similarity=0.045 Sum_probs=26.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (167)
.+|||+||..|.-+....+... +.+.+.|+|+
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~----------p~g~v~gVDl 102 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVN----------PNGMVLGVDL 102 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhC----------CCceEEEEee
Confidence 4799999999999988888774 4677888886
No 276
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.52 E-value=0.033 Score=46.09 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=63.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|||.-+|+|-=+++.+..+. ...+++.-|+|+++++..+++++..+...
T Consensus 52 ~~lDalaasGvR~iRy~~E~~----------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-------------------- 101 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELA----------GVDKVTANDISPEAVELIKRNLELNGLED-------------------- 101 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-S----------SECEEEEEES-HHHHHHHHHHHHHCT-SG--------------------
T ss_pred eEEeccccccHHHHHHHHHcC----------CCCEEEEecCCHHHHHHHHHhHhhccccC--------------------
Confidence 799999999999999988763 25689999999999999999987655410
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
.++.+...|...+. .....||+|=. +-+-..--+++.+.+.++.||+|.++.
T Consensus 102 -------------------~~~~v~~~DAn~ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 102 -------------------ERIEVSNMDANVLLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -------------------CCEEEEES-HHHHHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------ceEEEehhhHHHHhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 12344333332221 12344555521 122334567778888999999998853
No 277
>KOG2793|consensus
Probab=95.17 E-value=0.12 Score=40.26 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=29.2
Q ss_pred hhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 120 ~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+|+|+.+.++........+...+...|..+|.+++.
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 899999988887777788888888889888855543
No 278
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.12 E-value=0.36 Score=38.90 Aligned_cols=132 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEEeeecCCCchHHHHHHhhc----cCCCCCCC-----CCCCCcEEEeeCChHHHH--HHHHHHHhcccCCCCCCccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVD----KLPPNTLS-----EHCAPHVTVADINRAMLD--VGEQRARDLFKVPVPNPRLRFL 70 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~----~~~~~~~~-----~~~~~~~~~~D~s~~~~~--~a~~~~~~~~~~~~~~~~~~~~ 70 (167)
+||.||.|.|.-..+++..+. ....+.++ .++...++.+|+..-.-- .....+.... .+...
T Consensus 89 ~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p---~~sk~---- 161 (315)
T PF11312_consen 89 RVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPP---PLSKY---- 161 (315)
T ss_pred eEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCC---Ccccc----
Confidence 799999999999888888872 11111111 234568999999654322 2222221110 00000
Q ss_pred ccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCCCCC-------CccchhhHhhhhcccc-----cccHHHH
Q psy889 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPI-------ESDSYSAYTIAFGIRN-----VTRIDKA 138 (167)
Q Consensus 71 ~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~D~v~~~~~~~~-----~~~~~~~ 138 (167)
+.....+ ......-++.|.+.|...... .....++|...+++.. .+...++
T Consensus 162 -a~~~~~~----------------~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~F 224 (315)
T PF11312_consen 162 -ASAANWP----------------LIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKF 224 (315)
T ss_pred -ccccccc----------------cCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHH
Confidence 0000000 001111246666766554432 2235789988777653 3446788
Q ss_pred HHHHHHhcCCCcEEEEEee
Q psy889 139 LSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 139 l~~~~~~LkpgG~l~~~~~ 157 (167)
|.++-..++||..|+++|-
T Consensus 225 Ll~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 225 LLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHhhcCCCcEEEEEcC
Confidence 9999999999999999774
No 279
>PRK10742 putative methyltransferase; Provisional
Probab=95.05 E-value=0.087 Score=41.14 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=46.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCC-CC---Cccccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-PN---PRLRFLEANAEE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~~d~~~ 76 (167)
+|||+.+|.|..++.++. .+++++++|.++......+..+++....+. .. .+++...+|...
T Consensus 91 ~VLD~TAGlG~Da~~las-------------~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS-------------VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred EEEECCCCccHHHHHHHH-------------cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 799999999999999987 577899999999999999988876421110 11 245666666444
No 280
>KOG0822|consensus
Probab=94.98 E-value=0.13 Score=44.21 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=75.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+|+=+|+|-|-+..+.+++..+.. +...+++++-++.++...+.+ +...+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~-------RkVklyavEKNPNAivtL~~~-n~~~W---------------------- 419 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETD-------RKVKLYAVEKNPNAIVTLQNR-NFECW---------------------- 419 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhc-------CceEEEEEecCcchhhhhhhh-chhhh----------------------
Confidence 467789999999888777654333 467899999999998888763 22232
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhh--cccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..++.++..|+..++.+....|++++.. .+..-.--...|..+-+.|||+|+.+=
T Consensus 420 ------------------~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 420 ------------------DNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ------------------cCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 2678999999999875557789887732 111111235678888999999988764
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.97 E-value=0.038 Score=41.91 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=50.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
.|+|+|.-.|+-+..++..+.... ...+++++|++....... ..+....
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~-------~~~~VigiDIdir~~~~~--a~e~hp~---------------------- 83 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLG-------GKGKVIGIDIDIRPHNRK--AIESHPM---------------------- 83 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT----------EEEEEES-GTT--S---GGGG-------------------------
T ss_pred eEEEEecCCCchHHHHHHHHHHhC-------CCceEEEEeCCcchhchH--HHhhccc----------------------
Confidence 689999999998888877653221 267899999954332211 1121111
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCC--------CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
..++.+++++..+.. .......+| +..+-|......+.|+-....+.+|++++
T Consensus 84 ------------------~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlV-ilDs~H~~~hvl~eL~~y~plv~~G~Y~I 144 (206)
T PF04989_consen 84 ------------------SPRITFIQGDSIDPEIVDQVRELASPPHPVLV-ILDSSHTHEHVLAELEAYAPLVSPGSYLI 144 (206)
T ss_dssp -------------------TTEEEEES-SSSTHHHHTSGSS----SSEEE-EESS----SSHHHHHHHHHHT--TT-EEE
T ss_pred ------------------cCceEEEECCCCCHHHHHHHHHhhccCCceEE-EECCCccHHHHHHHHHHhCccCCCCCEEE
Confidence 145666666544321 011112222 22233444566777888899999999998
Q ss_pred EEe
Q psy889 154 CLE 156 (167)
Q Consensus 154 ~~~ 156 (167)
+-|
T Consensus 145 VeD 147 (206)
T PF04989_consen 145 VED 147 (206)
T ss_dssp ETS
T ss_pred EEe
Confidence 844
No 282
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.94 E-value=0.33 Score=41.65 Aligned_cols=82 Identities=7% Similarity=-0.029 Sum_probs=56.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-C-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~- 79 (167)
+|.|.+||+|++-....+++.... ....++|.|++......++.+.--++... ......+|-..-| +
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~-------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~----~~~i~~~dtl~~~~~~ 257 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQ-------DEIFIYGQEINDTTYRLAKMNLILHGIEG----DANIRHGDTLSNPKHD 257 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhc-------cceeEEEEeCCHHHHHHHHHHHHHhCCCc----cccccccccccCCccc
Confidence 689999999999888888774200 03669999999999999999987666521 2233333322222 3
Q ss_pred ---CCCCCceeeeeeccc
Q psy889 80 ---ESDSYSAYTIAFGIR 94 (167)
Q Consensus 80 ---~~~~fd~~~~~~~~~ 94 (167)
..+.||++...++..
T Consensus 258 ~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 258 DKDDKGKFDFVIANPPFS 275 (489)
T ss_pred ccCCccceeEEEeCCCCC
Confidence 557788888887775
No 283
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.90 E-value=0.0072 Score=46.72 Aligned_cols=31 Identities=39% Similarity=0.754 Sum_probs=22.3
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+|+.+|++++||++++||.+++++++|++++
T Consensus 101 ~~v~~da~~lp~~d~sfD~v~~~fglrn~~d 131 (233)
T PF01209_consen 101 EFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD 131 (233)
T ss_dssp EEEE-BTTB--S-TT-EEEEEEES-GGG-SS
T ss_pred eEEEcCHHHhcCCCCceeEEEHHhhHHhhCC
Confidence 4789999999999999999999999999986
No 284
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.17 Score=41.02 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=77.1
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
++++|+.||.|.+.+-+..+. ...+.++|+++..++.-+.+... -.....|+.++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag------------f~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~ 61 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG------------FEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGE 61 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC------------CeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChh
Confidence 589999999999998887643 34467999999999988877652 123445555543
Q ss_pred -CCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhh----hhcccccccHHH----HHHHHHHhcCCC
Q psy889 79 -IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI----AFGIRNVTRIDK----ALSEAYRVLKPG 149 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~----~~~~~~~~~~~~----~l~~~~~~Lkpg 149 (167)
+....+|.++-+++=..+-..+.+-.+ .|... .+--..+.+|-. ..++.+++.+.. .++.+.+.|+..
T Consensus 62 ~~~~~~~DvligGpPCQ~FS~aG~r~~~--~D~R~-~L~~~~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 62 ALRKSDVDVLIGGPPCQDFSIAGKRRGY--DDPRG-SLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred hccccCCCEEEeCCCCcchhhcCcccCC--cCccc-eeeHHHHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 222277888888777666544433000 00000 000011122211 235566766544 889999999999
Q ss_pred cE
Q psy889 150 GR 151 (167)
Q Consensus 150 G~ 151 (167)
|+
T Consensus 139 GY 140 (328)
T COG0270 139 GY 140 (328)
T ss_pred CC
Confidence 98
No 285
>KOG1501|consensus
Probab=94.47 E-value=0.18 Score=42.58 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=39.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
.|||+|.|||-+++..+++. .-.+++++.-..|.+.|++.....++
T Consensus 69 ~vLdigtGTGLLSmMAvrag------------aD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG------------ADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred EEEEccCCccHHHHHHHHhc------------CCeEEeehhhchHHHHHHHHHhcCCC
Confidence 58999999999999988876 34599999999999999988876665
No 286
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.44 E-value=0.24 Score=37.92 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=40.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
++.|+||--+.++.++.+.. ...++++.|+++.-++.|.+++.....
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~-----------~~~~~va~eV~~gpl~~a~~~v~~~~l 65 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNN-----------PASTAVAGEVVPGPLESAIRNVKKNNL 65 (226)
T ss_pred ceeeccCchhHhHHHHHhcC-----------CcceEEEeecccCHHHHHHHHHHhcCC
Confidence 48999999999999998865 367899999999999999999876654
No 287
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.85 E-value=0.099 Score=40.02 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=31.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
++-|.|||+|++.-.+.-.-.. .-..+++.|+++++++.|++++.
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~---------~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRR---------RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGG---------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred eeeccCCCccHHHHHHHHhhhH---------HHHhHhcccCCHHHHHHHHHhhh
Confidence 4679999999986655322110 24579999999999999999875
No 288
>KOG2539|consensus
Probab=93.35 E-value=0.1 Score=44.11 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=65.6
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh-cccCCCCCCcccccccccccCCCCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
++|+|.|.|.-.-++...... ..-.++.+|.+.+|.......... .++
T Consensus 204 ~~dfgsg~~~~~~a~~~lwr~---------t~~~~~~Vdrs~~~~~~~e~~lr~~~~~---------------------- 252 (491)
T KOG2539|consen 204 LRDFGSGAGNGGWAAVLLWRQ---------TKREYSLVDRSRAMLKQSEKNLRDGSHI---------------------- 252 (491)
T ss_pred HHHHHhhcccchhhhhhhccc---------ccceeEeeccchHHHHHHHHhhcChhhc----------------------
Confidence 567888888776666555431 245689999999999998887765 111
Q ss_pred CCCceeeeeeccccccCCCCceEEee--cccCCCCC-CccchhhHhhhhcccccccH----HHHHHHHHHhcCCCcEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLE--ANAEELPI-ESDSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~-~~~~~D~v~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~ 154 (167)
+...... ..-.-.|. ....||+|+|++.++..... .-.-+-.++..++|+++++
T Consensus 253 -------------------g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 253 -------------------GEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred -------------------CchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 1111111 00111232 23459999999988866442 1222345666789999999
Q ss_pred Eeecc
Q psy889 155 LEFSH 159 (167)
Q Consensus 155 ~~~~~ 159 (167)
++-+.
T Consensus 314 Ie~g~ 318 (491)
T KOG2539|consen 314 IEKGT 318 (491)
T ss_pred EecCC
Confidence 87543
No 289
>KOG2920|consensus
Probab=93.20 E-value=0.11 Score=41.20 Aligned_cols=36 Identities=17% Similarity=-0.066 Sum_probs=27.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD 48 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 48 (167)
.||||+|||.|--......+. ...+...|.+...++
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~------------~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKG------------AVSVHFQDFNAEVLR 153 (282)
T ss_pred ceeEecCCcccccchhhhhhc------------cceeeeEecchhhee
Confidence 489999999998887776654 356777787776653
No 290
>KOG1562|consensus
Probab=92.86 E-value=0.23 Score=39.82 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=74.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
+||=+|.|-|.+.+....| + .-..+.-+|++...++..++-++..+.
T Consensus 124 kvlVVgggDggvlrevikH-~----------~ve~i~~~eiD~~Vie~sk~y~p~la~---------------------- 170 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKH-K----------SVENILLCEIDENVIESSKQYLPTLAC---------------------- 170 (337)
T ss_pred eEEEEecCCccceeeeecc-c----------cccceeeehhhHHHHHHHHHHhHHHhc----------------------
Confidence 6888999999999998888 3 366799999999999999988876654
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCC--CCCccchhhHhhhhccccc----ccHHHHHHHHHHhcCCCcEEEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
.|+ +.++.+.-+|...+ -.+.++||+|+.-..=..- .-.+..+..+.+.||+||+++..
T Consensus 171 -gy~--------------~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 171 -GYE--------------GKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred -ccC--------------CCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 011 24566665554332 1335778888763311111 12466778899999999999875
Q ss_pred e
Q psy889 156 E 156 (167)
Q Consensus 156 ~ 156 (167)
.
T Consensus 236 ~ 236 (337)
T KOG1562|consen 236 G 236 (337)
T ss_pred c
Confidence 4
No 291
>KOG1227|consensus
Probab=92.84 E-value=0.051 Score=43.50 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=36.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.|+|+-+|.|.+++.++-..+ ...++++|.++.+++..++.++..
T Consensus 197 viVDLYAGIGYFTlpflV~ag-----------Ak~V~A~EwNp~svEaLrR~~~~N 241 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTAG-----------AKTVFACEWNPWSVEALRRNAEAN 241 (351)
T ss_pred hhhhhhcccceEEeehhhccC-----------ccEEEEEecCHHHHHHHHHHHHhc
Confidence 478999999999995444332 567999999999999999887643
No 292
>KOG4058|consensus
Probab=92.72 E-value=0.45 Score=34.48 Aligned_cols=46 Identities=9% Similarity=-0.111 Sum_probs=37.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK 59 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~ 59 (167)
+.+|+|+|.|.+-.+.+++. .-..+|+++++-.+..++-+.-+.+.
T Consensus 75 klvDlGSGDGRiVlaaar~g------------~~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCG------------LRPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred cEEeccCCCceeehhhhhhC------------CCcCCceeccHHHHHHHHHHHHHHhc
Confidence 46899999999999988865 24578999999999999877766554
No 293
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.68 E-value=0.092 Score=35.73 Aligned_cols=28 Identities=7% Similarity=-0.256 Sum_probs=23.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (167)
..+|+|||+|-+...+.+ .+..-.|+|.
T Consensus 61 ~FVDlGCGNGLLV~IL~~-------------EGy~G~GiD~ 88 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNS-------------EGYPGWGIDA 88 (112)
T ss_pred ceEEccCCchHHHHHHHh-------------CCCCcccccc
Confidence 468999999999888877 4777889995
No 294
>PHA01634 hypothetical protein
Probab=92.41 E-value=0.35 Score=34.10 Aligned_cols=43 Identities=19% Similarity=-0.005 Sum_probs=36.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+|+|+|++.|..++.++-.. ..++++++.++...+..+++...
T Consensus 31 tV~dIGA~iGdSaiYF~l~G------------AK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 31 TIQIVGADCGSSALYFLLRG------------ASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred EEEEecCCccchhhHHhhcC------------ccEEEEeccCHHHHHHHHHHhhh
Confidence 79999999999999987644 45799999999999999887754
No 295
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.13 E-value=0.53 Score=38.77 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=38.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
+|+|.-+|+|-=+++.+.... ..+++.-|+|+.+++..+++....
T Consensus 55 ~v~DalsatGiRgIRya~E~~-----------~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETG-----------VVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred EEeecccccchhHhhhhhhcC-----------ccEEEEccCCHHHHHHHHHHHHhc
Confidence 689999999988888887663 338999999999999999998754
No 296
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=0.87 Score=35.80 Aligned_cols=47 Identities=6% Similarity=-0.074 Sum_probs=36.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
..+|+|+|++.-+..+++.+.... ...+++.+|+|...+....+.+.
T Consensus 81 ~lveLGsGns~Ktr~Llda~~~~~-------~~~ryvpiDv~a~iL~~ta~ai~ 127 (321)
T COG4301 81 TLVELGSGNSTKTRILLDALAHRG-------SLLRYVPIDVSASILRATATAIL 127 (321)
T ss_pred eEEEecCCccHHHHHHHHHhhhcC-------CcceeeeecccHHHHHHHHHHHH
Confidence 468999999999999999874211 24689999999999887666554
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.42 E-value=0.87 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=31.7
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~~ 53 (167)
+||..|||. |..+..++++. +. +++++|.+++..+.+++.
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~------------g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLL------------GAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHHc
Confidence 688888877 77777777765 44 599999999988888764
No 298
>KOG1099|consensus
Probab=91.28 E-value=0.86 Score=35.43 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=28.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
|++|+|+..|+-+..+.+++-+..++ +.+....++++|+.+
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~--~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPS--SGERDKKIVAVDLQP 84 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCC--cchhhccEEEEeccc
Confidence 78999999999999999887431111 111233599999855
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.27 E-value=0.29 Score=39.99 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=31.0
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|+=+|||+ |-++..+++... ..+++++|.++.-++.|++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-----------a~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-----------ASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCCHHHHHHHHHhC
Confidence 467788886 444455555553 578999999999999998754
No 300
>KOG2651|consensus
Probab=91.17 E-value=0.34 Score=40.16 Aligned_cols=40 Identities=5% Similarity=-0.066 Sum_probs=33.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
.|+|+|+|.|+++..+.-++ +..++++|-|....+.|++.
T Consensus 156 ~vvD~GaG~G~LSr~lSl~y------------~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFLSLGY------------GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred eeEEcCCCchHHHHHHhhcc------------CceEEEeccchHHHHHHHHH
Confidence 58999999999999998766 67899999998777766543
No 301
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.13 E-value=0.33 Score=33.15 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|.|..+..++++. +.+++++|.++.-.+.+++
T Consensus 1 ~vG~~a~q~ak~~------------G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAM------------GAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHT------------TSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHc------------CCEEEEEECCHHHHHHHHh
Confidence 4577888888876 7899999999998888875
No 302
>KOG1253|consensus
Probab=91.09 E-value=0.14 Score=43.51 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=67.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 80 (167)
.+|||.-|++|--+++.+.++. -..++++-|.++..++..+++.+....
T Consensus 111 l~vLealsAtGlrslRya~El~----------~v~~v~AnD~~~~aV~~i~~Nv~~N~v--------------------- 159 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELP----------GVRQVVANDLNENAVTSIQRNVELNGV--------------------- 159 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhc----------chhhhcccCCCHHHHHHHHhhhhhcCc---------------------
Confidence 3789999999999999998885 255799999999999999988764432
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCC----CCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+.....|+..+ +-....||+|=. +-+-..-.+|+.+.+-++.||.|+++.
T Consensus 160 -------------------~~ive~~~~DA~~lM~~~~~~~~~FDvIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 160 -------------------EDIVEPHHSDANVLMYEHPMVAKFFDVIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred -------------------hhhcccccchHHHHHHhccccccccceEec----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 01222223332222 122345666622 122234456777888889999999854
No 303
>KOG2671|consensus
Probab=91.00 E-value=0.57 Score=38.41 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=49.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHH-------HHHHHhcccCCCCCCccccccccc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG-------EQRARDLFKVPVPNPRLRFLEANA 74 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a-------~~~~~~~~~~~~~~~~~~~~~~d~ 74 (167)
-|.|...|||++....+. -++.++|.|++-.++.+. +.+++..+.. .-.+-...+|.
T Consensus 211 ivyDPFVGTGslLvsaa~-------------FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~ 274 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAH-------------FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADF 274 (421)
T ss_pred EEecCccccCceeeehhh-------------hcceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecc
Confidence 478999999999877665 378899999999888743 3444443320 11233445555
Q ss_pred ccCC-CCCCCCceeeeeecc
Q psy889 75 EELP-IESDSYSAYTIAFGI 93 (167)
Q Consensus 75 ~~l~-~~~~~fd~~~~~~~~ 93 (167)
..-+ =....||.+++.++.
T Consensus 275 sn~~~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 275 SNPPLRSNLKFDAIVCDPPY 294 (421)
T ss_pred cCcchhhcceeeEEEeCCCc
Confidence 5544 336678888877655
No 304
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.87 E-value=0.35 Score=38.34 Aligned_cols=74 Identities=8% Similarity=0.021 Sum_probs=52.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC--
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-- 78 (167)
|+++|+.||.|.++.-+.++. ...+.++|+++.+++.-+.+.. ....+|+.++.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag------------~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~ 56 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAG------------FEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPS 56 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTT------------EEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHH
T ss_pred CcEEEEccCccHHHHHHHhcC------------cEEEEEeecCHHHHHhhhhccc------------ccccccccccccc
Confidence 689999999999999987743 3457799999999999888875 34577777775
Q ss_pred -CCCCCCceeeeeeccccccCC
Q psy889 79 -IESDSYSAYTIAFGIRNIDIP 99 (167)
Q Consensus 79 -~~~~~fd~~~~~~~~~~~~~~ 99 (167)
++. ..|.++-+++=..+-..
T Consensus 57 ~l~~-~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 57 DLPK-DVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp HHHH-T-SEEEEE---TTTSTT
T ss_pred cccc-cceEEEeccCCceEecc
Confidence 554 58888888776555443
No 305
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.78 E-value=0.31 Score=38.11 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=34.1
Q ss_pred CceEEeecccCC-CCC-CccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 101 PRLRFLEANAEE-LPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 101 ~~~~~~~~d~~~-~~~-~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
.++.++++..++ +|. +... +.+...-.........+|..++..|.|||++++=|++.
T Consensus 157 ~~v~~vkG~F~dTLp~~p~~~--IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 157 DNVRFVKGWFPDTLPDAPIER--IALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TTEEEEES-HHHHCCC-TT----EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred ccEEEECCcchhhhccCCCcc--EEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 567777776544 221 1111 11111122345667899999999999999999977654
No 306
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.62 E-value=0.29 Score=35.81 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=31.3
Q ss_pred CccchhhHhhhhcccccc-----c------HHHHHHHHHHhcCCCcEEEEEe
Q psy889 116 ESDSYSAYTIAFGIRNVT-----R------IDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~~~~-----~------~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
..++||.+.|.+++.++- + -.+.+.++.++|||||.|++.-
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 346799999988776552 1 2467789999999999999854
No 307
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.37 E-value=0.53 Score=36.45 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=40.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCC----CCccccccccccc-
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEE- 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~d~~~- 76 (167)
+|||.-+|-|.-++.++. + +.++++++.|+-+....+.-+++....+.. ..+++...+|..+
T Consensus 78 ~VLDaTaGLG~Da~vlA~-~------------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLAS-L------------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp -EEETT-TTSHHHHHHHH-H------------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred EEEECCCcchHHHHHHHc-c------------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 699999999999999875 4 678999999998877777666544321111 0255555555444
Q ss_pred CCCCCCCCc
Q psy889 77 LPIESDSYS 85 (167)
Q Consensus 77 l~~~~~~fd 85 (167)
++.+.++||
T Consensus 145 L~~~~~s~D 153 (234)
T PF04445_consen 145 LRQPDNSFD 153 (234)
T ss_dssp CCCHSS--S
T ss_pred HhhcCCCCC
Confidence 333344444
No 308
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.03 E-value=0.38 Score=37.37 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=48.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCccccccccc-----cc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-----EE 76 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-----~~ 76 (167)
++||+|.|..-+ ...++. ..-+.+.+|.|+++.+++.|+..+..... -+.-++..-..- ..
T Consensus 81 ~~LDIGvGAnCI----YPliG~-------~eYgwrfvGseid~~sl~sA~~ii~~N~~---l~~~I~lr~qk~~~~if~g 146 (292)
T COG3129 81 RILDIGVGANCI----YPLIGV-------HEYGWRFVGSEIDSQSLSSAKAIISANPG---LERAIRLRRQKDSDAIFNG 146 (292)
T ss_pred EEEeeccCcccc----cccccc-------eeecceeecCccCHHHHHHHHHHHHcCcc---hhhheeEEeccCccccccc
Confidence 689998876433 221110 00367899999999999999998864311 122222222221 11
Q ss_pred CCCCCCCCceeeeeecccc
Q psy889 77 LPIESDSYSAYTIAFGIRN 95 (167)
Q Consensus 77 l~~~~~~fd~~~~~~~~~~ 95 (167)
+-=..+.||+..+.++.+.
T Consensus 147 iig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 147 IIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cccccceeeeEecCCCcch
Confidence 2244788999999988853
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.66 E-value=2.3 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=26.8
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||..|+| .|..+..+++.. +.++++++.++...+.+++
T Consensus 168 ~vli~g~g~vG~~~~~la~~~------------G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM------------GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHH
Confidence 56666654 356666666654 6779999999888777653
No 310
>KOG0024|consensus
Probab=88.27 E-value=4.1 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=33.8
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=+|+|. |-.+...++++. ..+++.+|+++.-++.|++
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~G-----------A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMG-----------ASDVVITDLVANRLELAKK 212 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-----------CCcEEEeecCHHHHHHHHH
Confidence 688889886 566777788875 6789999999999999997
No 311
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.11 E-value=0.69 Score=37.29 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+..+.+.|++||.++....
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 466778899999999988654
No 312
>KOG1596|consensus
Probab=87.44 E-value=2 Score=33.74 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=29.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAM 46 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 46 (167)
+||=+|+++|..-.++.+-.. +...+++++.|...
T Consensus 159 KVLYLGAasGttVSHvSDiVG----------peG~VYAVEfs~rs 193 (317)
T KOG1596|consen 159 KVLYLGAASGTTVSHVSDIVG----------PEGCVYAVEFSHRS 193 (317)
T ss_pred eEEEeeccCCceeehhhcccC----------CCceEEEEEecccc
Confidence 689999999999888888775 56779999998654
No 313
>PTZ00357 methyltransferase; Provisional
Probab=87.30 E-value=3.1 Score=37.45 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=32.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
.|+=+|+|-|-+....+++..... ...++++++-++........+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~g-------vkVrIyAVEKNPpAA~~tllr~ 748 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALG-------VRLRIFAIEKNLPAAAFTRMRW 748 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcC-------CcEEEEEEecCcchHHHHHHHH
Confidence 478899999988777777654211 3568999999966555555444
No 314
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.23 E-value=1.9 Score=34.77 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=48.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc-EEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCC-C
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~ 80 (167)
|+|+.||.|.++.-+.++ +.+ +.++|+++..++..+.+... +...+|+.++.. +
T Consensus 1 vidLF~G~GG~~~Gl~~a-------------G~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~ 56 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-------------GFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSD 56 (315)
T ss_pred CEEEecCccHHHHHHHHc-------------CCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhh
Confidence 689999999999888663 444 45799999999888876532 234567777642 2
Q ss_pred CCCCceeeeeecccccc
Q psy889 81 SDSYSAYTIAFGIRNID 97 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~ 97 (167)
...+|.+..+++=..+-
T Consensus 57 ~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 57 IPDFDILLGGFPCQPFS 73 (315)
T ss_pred CCCcCEEEecCCCcccc
Confidence 33567776666554443
No 315
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.03 E-value=2.3 Score=37.79 Aligned_cols=43 Identities=9% Similarity=-0.163 Sum_probs=28.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCC-CCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTL-SEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~D~s~ 44 (167)
+|+|+|=|+|.......+.+.+..+..+ +.+...+++.+|..+
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 7999999999988888776632111111 111346899999754
No 316
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.81 E-value=5.7 Score=34.37 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=29.6
Q ss_pred eEEeeecCCCc-hHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+|+=+|+|.=. .+...++.+ +++++++|.+++-++.+++
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~l------------GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSL------------GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHH
Confidence 67888888744 444555554 7789999999999888875
No 317
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.00 E-value=0.89 Score=37.78 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=48.9
Q ss_pred CceEEeecccCCCC--CCccchhhHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeecccC
Q psy889 101 PRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 161 (167)
Q Consensus 101 ~~~~~~~~d~~~~~--~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (167)
.++.+...++.+.. .+++++|.++.+..+.|+++ ....++++.+.++|||++++-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 67788887776542 45788999999988888765 678889999999999999997766543
No 318
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=83.11 E-value=0.76 Score=33.16 Aligned_cols=33 Identities=27% Similarity=0.614 Sum_probs=29.3
Q ss_pred cccccccccccCCCCCCCCceeeeeeccccccC
Q psy889 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 66 ~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
+++|..+|++++|++++.||.+++.+.++++.+
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCC
Confidence 357899999999999999999999999988754
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.65 E-value=2.8 Score=31.72 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+||-.|+|+ |..+..++++. +.++++++.++...+.++
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~------------g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAA------------GARVIVTDRSDEKLELAK 175 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCeEEEEcCCHHHHHHHH
Confidence 578888775 44555555543 678999999887766654
No 320
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.52 E-value=2.9 Score=33.80 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCcEEEEEeec
Q psy889 137 KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.+..+.|++||.+++....
T Consensus 250 ~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 250 PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred HHHHHHHHHccCCcEEEEEecC
Confidence 3677889999999999876543
No 321
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.41 E-value=1.4 Score=35.70 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=62.4
Q ss_pred EEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCC
Q psy889 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (167)
Q Consensus 3 vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 81 (167)
|.=+|.| .|..+..++.-+ ++.++-.|+|..-+......+.
T Consensus 171 v~iiGGGvvgtnaAkiA~gl------------gA~Vtild~n~~rl~~ldd~f~-------------------------- 212 (371)
T COG0686 171 VVVLGGGVVGTNAAKIAIGL------------GADVTILDLNIDRLRQLDDLFG-------------------------- 212 (371)
T ss_pred EEEECCccccchHHHHHhcc------------CCeeEEEecCHHHHhhhhHhhC--------------------------
Confidence 3344554 355566665544 7899999999877666654432
Q ss_pred CCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEE
Q psy889 82 DSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153 (167)
Q Consensus 82 ~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 153 (167)
.++.....+...+...-...|+++....+..-+.++-+.++....||||+.++
T Consensus 213 -------------------~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 213 -------------------GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -------------------ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 34555555444443334567888776555556677888899999999999986
No 322
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.04 E-value=3.1 Score=29.30 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=25.7
Q ss_pred eeecCCC--chHHHHHH-hhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 5 FYLVFPG--DIAFRFLN-YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 5 D~g~G~G--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
|+|++.| ..+..++. ... +..+++++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~----------~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG----------PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS------------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66665542 332 478899999999999998888
No 323
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=81.54 E-value=3.5 Score=32.79 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.++++.|+++|.++...
T Consensus 243 ~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 243 AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred HHHHHHHHHHhcCCEEEEEe
Confidence 45778899999999998654
No 324
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.10 E-value=4.9 Score=31.53 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=38.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
..|||.-+|+|....+..+ .+..++|+|+++..++.+.+++....
T Consensus 224 diVlDpf~GsGtt~~aa~~-------------~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 224 DIVLDPFAGSGTTGIAAKN-------------LGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CEEeecCCCCChHHHHHHH-------------cCCceEEEecCHHHHHHHHHHHHhhc
Confidence 3699999999999888766 36789999999999999999997543
No 325
>PRK10458 DNA cytosine methylase; Provisional
Probab=80.02 E-value=3.2 Score=35.51 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=33.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++++|+.||.|+++.-+-... ...+.++|+++.+.+.-+.+.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG------------~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIG------------GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcC------------CEEEEEEechHHHHHHHHHHc
Confidence 589999999999999986532 334668999998888877764
No 326
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=80.00 E-value=10 Score=27.61 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=28.0
Q ss_pred CccchhhHhhhhcccc-------------cccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 116 ESDSYSAYTIAFGIRN-------------VTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 116 ~~~~~D~v~~~~~~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....||.|+-++-... -.-+...|..+.++|+++|.+.++-.
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4466777766543221 11246778899999999999998543
No 327
>KOG2782|consensus
Probab=79.23 E-value=3 Score=32.27 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=60.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC----
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~---- 78 (167)
.+|+.-|.|.++..++++.. ....++.|.++-+...|+-......- +......+.+..++
T Consensus 47 f~DmTfGagGHt~~ilqk~s-----------e~k~yalDrDP~A~~La~~~s~el~~-----~~l~a~Lg~Fs~~~~l~~ 110 (303)
T KOG2782|consen 47 FVDMTFGAGGHTSSILQKHS-----------ELKNYALDRDPVARKLAHFHSDELMH-----PTLKAVLGNFSYIKSLIA 110 (303)
T ss_pred EEEEeccCCcchHHHHHhCc-----------HhhhhhhccChHHHHHHHHhhHhhcc-----hhHHHHHhhhHHHHHHHH
Confidence 57999999999999999884 67788999999888887765532221 34455555555554
Q ss_pred ---CCCCCCceeeeeeccccccC
Q psy889 79 ---IESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 79 ---~~~~~fd~~~~~~~~~~~~~ 98 (167)
+...++|.+++.++-+.+..
T Consensus 111 ~~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 111 DTGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred HhCCCcCCcceEEeecCcccccc
Confidence 77889999999999988873
No 328
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=78.37 E-value=32 Score=29.59 Aligned_cols=48 Identities=6% Similarity=-0.007 Sum_probs=34.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
.|.|.+||+|++......... .. +....++|.+....+...++.+..-
T Consensus 220 ~~~Dp~~Gsg~~L~~~~~~~~-~~------qe~~~~~gqe~~~~~~~~a~mnm~l 267 (501)
T TIGR00497 220 DVYDMACGSGSLLLQVIKVLG-EK------TSLVSYYGQEINHTTYNLCRMNMIL 267 (501)
T ss_pred cccccccchHHHHHHHHHHhc-cc------ccceeEEEEeCchHHHHHHHHHHHH
Confidence 578999999998766544331 00 0235699999999999999887543
No 329
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.36 E-value=3.1 Score=32.78 Aligned_cols=37 Identities=5% Similarity=0.026 Sum_probs=28.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
.++|+|||.|.++..++..+... ......++.+|...
T Consensus 21 ~~vEfGaGrg~LS~~v~~~~~~~------~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 21 CFVEFGAGRGELSRWVAQALQED------KPSNSRFVLIDRAS 57 (259)
T ss_pred EEEEECCCchHHHHHHHHHhhhc------ccCCccEEEEecCc
Confidence 47999999999999999887421 00256799999855
No 330
>KOG2352|consensus
Probab=77.04 E-value=3.9 Score=34.99 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=37.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
.+|-+|-|+|.+...+...+ +..+++++++++.+++.++..+...
T Consensus 298 ~~lvvg~ggG~l~sfl~~~~-----------p~~~i~~ve~dP~~l~va~q~f~f~ 342 (482)
T KOG2352|consen 298 KQLVVGLGGGGLPSFLHMSL-----------PKFQITAVEIDPEMLEVATQYFGFM 342 (482)
T ss_pred cEEEEecCCCccccceeeec-----------CccceeEEEEChhHhhccHhhhchh
Confidence 35778888899988887776 3789999999999999999887543
No 331
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.10 E-value=19 Score=28.80 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+....+.|++||.+++.-.
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEec
Confidence 467888999999999988665
No 332
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=75.94 E-value=24 Score=27.60 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=25.3
Q ss_pred hhhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEE
Q psy889 120 YSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 120 ~D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 154 (167)
.-++++..++..++ ...++|+.+.+...||+.+++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 34555555555554 467889999988889999888
No 333
>KOG0023|consensus
Probab=74.50 E-value=4.9 Score=32.82 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.4
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|-|+++..+++++ +.+++++|.+..--+.+-+++
T Consensus 191 GGLGh~aVq~AKAM------------G~rV~vis~~~~kkeea~~~L 225 (360)
T KOG0023|consen 191 GGLGHMAVQYAKAM------------GMRVTVISTSSKKKEEAIKSL 225 (360)
T ss_pred cccchHHHHHHHHh------------CcEEEEEeCCchhHHHHHHhc
Confidence 35899999999998 899999999875555554443
No 334
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=74.41 E-value=5.2 Score=26.72 Aligned_cols=20 Identities=20% Similarity=0.183 Sum_probs=14.1
Q ss_pred eEEeeecCCCchHHHHHHhhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVD 22 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~ 22 (167)
+|| +.||.|..|-.+++++.
T Consensus 2 ~Il-l~C~~GaSSs~la~km~ 21 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANALN 21 (99)
T ss_pred EEE-EECCCCCCHHHHHHHHH
Confidence 455 66899977777777653
No 335
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=73.47 E-value=6.9 Score=33.90 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=24.7
Q ss_pred cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEE
Q psy889 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154 (167)
Q Consensus 118 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (167)
..+|+|+....+...+.++-+.++..+.+|||+.++-
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 3478886654333434444467788999999998763
No 336
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.85 E-value=2 Score=31.93 Aligned_cols=24 Identities=42% Similarity=0.815 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEE
Q psy889 132 VTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 132 ~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
...+...+.+++|+|||||.+++.
T Consensus 32 ~~~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 32 LEWMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345788999999999999998873
No 337
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.71 E-value=10 Score=30.81 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=39.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccc
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 69 (167)
++|.-+|+|...+.-.+++ ...++.++|++++-+...+-++....-.+.-++-+++
T Consensus 65 hrivtigSGGcn~L~ylsr-------------~Pa~id~VDlN~ahiAln~lklaA~R~Lp~h~dl~r~ 120 (414)
T COG5379 65 HRIVTIGSGGCNMLAYLSR-------------APARIDVVDLNPAHIALNRLKLAAFRHLPSHEDLVRF 120 (414)
T ss_pred cEEEEecCCcchHHHHhhc-------------CCceeEEEeCCHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 4788899998877666655 3688999999999999888777644333333333333
No 338
>KOG0821|consensus
Probab=71.60 E-value=7.3 Score=30.28 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=33.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
.|.++|.|.|+++++++++. ..++..++.+..++.-.+...+
T Consensus 53 ~v~eIgPgpggitR~il~a~------------~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 53 YVYEIGPGPGGITRSILNAD------------VARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred eeEEecCCCCchhHHHHhcc------------hhheeeeeeccccChHHHHHhh
Confidence 58899999999999999865 4678888988888776664443
No 339
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.03 E-value=6.2 Score=26.23 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=29.2
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
||.|.++..+++.+.. .+..++.+|.+++.++.+++.
T Consensus 4 ~G~g~~~~~i~~~L~~---------~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE---------GGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp ES-SHHHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHh---------CCCEEEEEECCcHHHHHHHhc
Confidence 7888999999998863 234799999999998887754
No 340
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=70.24 E-value=22 Score=28.07 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=24.9
Q ss_pred eEEeeecC-CCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+||-.|+| .|..+..++++. +.++++++.+++..+.++
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~------------G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAM------------GFETVAITRSPDKRELAR 203 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHH
Confidence 46666665 445555555544 677888888888777664
No 341
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=69.95 E-value=3.5 Score=32.24 Aligned_cols=33 Identities=27% Similarity=0.648 Sum_probs=29.1
Q ss_pred cccccccccccCCCCCCCCceeeeeeccccccC
Q psy889 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 66 ~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
++++..+|++++|++.++||.+.+.+.++++.+
T Consensus 128 ~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 128 NIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred CeEEEEcccccCCCCCCCEeEEEEecccccCCC
Confidence 357889999999999999999999999988764
No 342
>PRK13699 putative methylase; Provisional
Probab=69.57 E-value=5.3 Score=30.67 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=39.0
Q ss_pred cccccccccC--CCCCCCCceeeeeeccccc-cCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHH
Q psy889 68 RFLEANAEEL--PIESDSYSAYTIAFGIRNI-DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYR 144 (167)
Q Consensus 68 ~~~~~d~~~l--~~~~~~fd~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~ 144 (167)
++..+|..++ .+++++.|.+.+++|.... ....++. .. .|.. ..-....+.+++|
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~-----------~~---~~~~--------~ew~~~~l~E~~R 60 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRT-----------IA---GDKT--------DEWLQPACNEMYR 60 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcc-----------cc---cccH--------HHHHHHHHHHHHH
Confidence 4456665554 4888899999999888421 1100000 00 0100 1114678899999
Q ss_pred hcCCCcEEEE
Q psy889 145 VLKPGGRFLC 154 (167)
Q Consensus 145 ~LkpgG~l~~ 154 (167)
+|||||.+++
T Consensus 61 VLKpgg~l~i 70 (227)
T PRK13699 61 VLKKDALMVS 70 (227)
T ss_pred HcCCCCEEEE
Confidence 9999998876
No 343
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=68.44 E-value=4.3 Score=33.56 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=23.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+|+=+|+| ..+..+++.+.. .+.+++++|.+++-++.+.
T Consensus 169 ~VlViGaG--~vG~~aa~~a~~---------lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 169 DVTIIGGG--VVGTNAAKMANG---------LGATVTILDINIDRLRQLD 207 (370)
T ss_pred eEEEEcCC--HHHHHHHHHHHH---------CCCeEEEEECCHHHHHHHH
Confidence 35556654 444444443321 2678999999886655443
No 344
>KOG3924|consensus
Probab=68.19 E-value=5.5 Score=33.28 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEe
Q psy889 132 VTRIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 132 ~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
-++...-+.++..-+++|.+++...
T Consensus 284 dp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 284 DPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CHHHHHhhHHHHhhCCCcceEeccc
Confidence 4555556679999999999998754
No 345
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=67.38 E-value=23 Score=27.12 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+....+.|+++|.++...
T Consensus 171 ~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 171 SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred HHHHHHHHHhcCCcEEEEEe
Confidence 35677788899999987643
No 346
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=67.22 E-value=21 Score=29.02 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+....+.|+++|.++....
T Consensus 271 ~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HHHHHHHHHHhcCCEEEEEcc
Confidence 467778889999999987554
No 347
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=67.05 E-value=7.1 Score=29.94 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=30.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+++|+-||+|.+++.+.. .+..++.-|+++..+...+..++.
T Consensus 23 ~~vepF~G~g~V~~~~~~-------------~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 23 TYVEPFAGGGSVFLNLKQ-------------PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp EEEETT-TTSHHHHCC----------------SSEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEEecchhHHHHHhcc-------------cccceeeeechHHHHHHHHHHHhc
Confidence 689999999999888765 267799999999888777744443
No 348
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.94 E-value=23 Score=27.89 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.++.+.|+++|.++....
T Consensus 238 ~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 238 KTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred HHHHHHHHHHhcCCEEEEEec
Confidence 467778899999999986543
No 349
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=66.90 E-value=26 Score=28.29 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+....+.+++||.+++...
T Consensus 257 ~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 257 ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHHHHHHHHhccCCEEEEECC
Confidence 456777889999999987554
No 350
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=66.47 E-value=9 Score=27.74 Aligned_cols=32 Identities=13% Similarity=-0.107 Sum_probs=21.9
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
-|||+|-|.|..--++...+ ++-+++++|..-
T Consensus 31 ~VlElGLGNGRTydHLRe~~-----------p~R~I~vfDR~l 62 (160)
T PF12692_consen 31 PVLELGLGNGRTYDHLREIF-----------PDRRIYVFDRAL 62 (160)
T ss_dssp -EEEE--TTSHHHHHHHHH-------------SS-EEEEESS-
T ss_pred ceEEeccCCCccHHHHHHhC-----------CCCeEEEEeeec
Confidence 38999999999988888777 478899999643
No 351
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=65.91 E-value=58 Score=26.97 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=41.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC----ChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI----NRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~----s~~~~~~a~~~~~~~ 57 (167)
+|+|+|.|.|.=...+++.+..-+ ..++..++|+++. +...++.+.+++...
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f 168 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRP----GGPPSLRITGIGPPNSGSADELQETGRRLAEF 168 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH
Confidence 799999999988888888875322 2235779999999 888888888887543
No 352
>PRK05785 hypothetical protein; Provisional
Probab=65.08 E-value=4 Score=31.19 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.4
Q ss_pred ccccCCCCCCCCceeeeeeccccccC
Q psy889 73 NAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 73 d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
|++++||++++||.+++.++++++.+
T Consensus 100 d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 100 SFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred chhhCCCCCCCEEEEEecChhhccCC
Confidence 45568899999999999999998765
No 353
>PRK08265 short chain dehydrogenase; Provisional
Probab=64.73 E-value=42 Score=25.63 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=26.7
Q ss_pred eeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 5 FYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 5 D~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
=+-.|+|.++.++++++.+ .+.+++.++.+..-++...
T Consensus 10 lItGas~gIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 10 IVTGGATLIGAAVARALVA---------AGARVAIVDIDADNGAAVA 47 (261)
T ss_pred EEECCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHH
Confidence 3455778888888887742 4778999998876544433
No 354
>PRK11524 putative methyltransferase; Provisional
Probab=64.59 E-value=7.9 Score=30.61 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=39.1
Q ss_pred cccccccccC--CCCCCCCceeeeeeccccccCCCCceEEeecccCCCCCCccchhhHhhhhcccccccHHHHHHHHHHh
Q psy889 68 RFLEANAEEL--PIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 145 (167)
Q Consensus 68 ~~~~~d~~~l--~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~ 145 (167)
++..+|..+. .++.++||.+.++++........ +. .+.++. . .+..-+...+.+++++
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~--------~~------~~~~~~--~----~~~~~l~~~l~~~~rv 69 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFD--------GL------IEAWKE--D----LFIDWLYEWIDECHRV 69 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccc--------cc------cccccH--H----HHHHHHHHHHHHHHHH
Confidence 4455555553 25677888888888874311100 00 001110 0 0122257889999999
Q ss_pred cCCCcEEEEE
Q psy889 146 LKPGGRFLCL 155 (167)
Q Consensus 146 LkpgG~l~~~ 155 (167)
|||||.+++.
T Consensus 70 LK~~G~i~i~ 79 (284)
T PRK11524 70 LKKQGTMYIM 79 (284)
T ss_pred hCCCcEEEEE
Confidence 9999999874
No 355
>KOG2360|consensus
Probab=64.05 E-value=23 Score=29.60 Aligned_cols=61 Identities=5% Similarity=-0.068 Sum_probs=47.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l 77 (167)
+|+|.+|..|.-|.++++... ..++++++|.+....+..++.+...+. ..++-..+|+..+
T Consensus 216 ~v~d~caapg~KTsH~a~i~~----------n~gki~afe~d~~r~~tl~~~l~~ag~-----~~~~~~~~df~~t 276 (413)
T KOG2360|consen 216 RVIDTCAAPGNKTSHLAAIMR----------NQGKIYAFERDAKRAATLRKLLKIAGV-----SIVESVEGDFLNT 276 (413)
T ss_pred ceeeeccccccchhhHHHHhh----------ccCCcchhhhhhHHHHHHHHHHHHcCC-----CccccccccccCC
Confidence 689999999999999988775 378899999999998888887776654 2344446666654
No 356
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=63.98 E-value=18 Score=28.97 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=26.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
|+-.|+|+-.|+-+..+.+ ++..++++|..+
T Consensus 213 M~avDLGAcPGGWTyqLVk-------------r~m~V~aVDng~ 243 (358)
T COG2933 213 MWAVDLGACPGGWTYQLVK-------------RNMRVYAVDNGP 243 (358)
T ss_pred ceeeecccCCCccchhhhh-------------cceEEEEeccch
Confidence 6778999999999999987 578899999543
No 357
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.41 E-value=33 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCcEEEEEeec
Q psy889 136 DKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
...+.+..+.|++||.+++.-+.
T Consensus 236 ~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 236 QSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred HHHHHHHHHhCcCCcEEEEEeec
Confidence 45788889999999999886653
No 358
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=62.92 E-value=19 Score=28.50 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCcEEEEEeec
Q psy889 137 KALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
..+.++.+.|+++|.+++.-..
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEeec
Confidence 4567788999999999976543
No 359
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=62.89 E-value=20 Score=28.89 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=51.5
Q ss_pred CCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCCCceeeeeeccccccCCCCceEEeecccCC-
Q psy889 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEE- 112 (167)
Q Consensus 34 ~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~- 112 (167)
..++..+|+++..+...++-++..+. .++.....|+.+
T Consensus 175 pk~iaVvDIDERli~fi~k~aee~g~-----------------------------------------~~ie~~~~Dlr~p 213 (354)
T COG1568 175 PKRIAVVDIDERLIKFIEKVAEELGY-----------------------------------------NNIEAFVFDLRNP 213 (354)
T ss_pred CceEEEEechHHHHHHHHHHHHHhCc-----------------------------------------cchhheeehhccc
Confidence 56799999999999999988887776 345555555544
Q ss_pred CC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCC---cEEEEE
Q psy889 113 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG---GRFLCL 155 (167)
Q Consensus 113 ~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~ 155 (167)
+| .....||+.+.- --.-++.++.++.+=...||.. |++.++
T Consensus 214 lpe~~~~kFDvfiTD-PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 214 LPEDLKRKFDVFITD-PPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred ChHHHHhhCCeeecC-chhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 22 223456766441 1112345566777777778776 666653
No 360
>PRK05599 hypothetical protein; Provisional
Probab=62.84 E-value=48 Score=25.13 Aligned_cols=44 Identities=20% Similarity=0.059 Sum_probs=31.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
|++|=.|+ ++.++..++.++. .+.+++.++.++.-++...+.++
T Consensus 1 ~~vlItGa-s~GIG~aia~~l~----------~g~~Vil~~r~~~~~~~~~~~l~ 44 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATLLC----------HGEDVVLAARRPEAAQGLASDLR 44 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 56775555 6778888888775 36788888888877776666554
No 361
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=62.73 E-value=34 Score=27.65 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=26.2
Q ss_pred eEEeeec--CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+||=.|+ +.|..+..++++. +.++++++.+++-.+.++
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk~~------------G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAKLH------------GCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred EEEEecCccHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHH
Confidence 4555554 4666777777665 678899988887766665
No 362
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.24 E-value=14 Score=24.36 Aligned_cols=19 Identities=26% Similarity=0.231 Sum_probs=13.0
Q ss_pred eEEeeecCCCchHHHHHHhh
Q psy889 2 YILFYLVFPGDIAFRFLNYV 21 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~ 21 (167)
+|| +.||+|..|..+++++
T Consensus 5 ~IL-l~C~~G~sSS~l~~k~ 23 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNKM 23 (95)
T ss_pred EEE-EECCCchhHHHHHHHH
Confidence 345 6789987777666654
No 363
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=62.20 E-value=37 Score=26.86 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.++.+.|+++|.++...
T Consensus 239 ~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 239 ASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEc
Confidence 45677889999999988654
No 364
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=61.96 E-value=35 Score=27.01 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.+..+.|+++|.++...
T Consensus 248 ~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 248 ETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 46778889999999988653
No 365
>KOG2078|consensus
Probab=61.68 E-value=5.5 Score=33.71 Aligned_cols=43 Identities=12% Similarity=-0.042 Sum_probs=36.6
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
|-|+.||.|-++..++.+ +.++++-|.++++++..+.++.-..
T Consensus 253 v~D~FaGvGPfa~Pa~kK-------------~crV~aNDLNpesik~Lk~ni~lNk 295 (495)
T KOG2078|consen 253 VCDVFAGVGPFALPAAKK-------------GCRVYANDLNPESIKWLKANIKLNK 295 (495)
T ss_pred hhhhhcCcCccccchhhc-------------CcEEEecCCCHHHHHHHHHhccccc
Confidence 568999999998888773 6899999999999999998875433
No 366
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=61.05 E-value=37 Score=26.09 Aligned_cols=59 Identities=7% Similarity=-0.039 Sum_probs=36.8
Q ss_pred eEEeeecCCCc--hHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccc
Q psy889 2 YILFYLVFPGD--IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN 73 (167)
Q Consensus 2 ~vLD~g~G~G~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 73 (167)
.|++.+|+.|. .+..|+.+-. |.+++++++-.++..+...++.+...+. .+.++++.++
T Consensus 44 liVe~~s~g~~~~ttiaLaaAAr---------~TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~vEfvvg~ 104 (218)
T PF07279_consen 44 LIVEAWSSGGAISTTIALAAAAR---------QTGGRHVCIVPDEQSLSEYKKALGEAGL----SDVVEFVVGE 104 (218)
T ss_pred EEEEEecCCCchHhHHHHHHHHH---------hcCCeEEEEcCChhhHHHHHHHHhhccc----cccceEEecC
Confidence 47788666442 3444433322 1589999999998888888877765543 1234555555
No 367
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=60.86 E-value=8.4 Score=31.21 Aligned_cols=116 Identities=18% Similarity=0.108 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCcccccccccccCCCCCCC-CceeeeeeccccccCCCCceEEeecccCCCC--CCccchh
Q psy889 45 AMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS-YSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYS 121 (167)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 121 (167)
.+....+.+++....+-....++=+-.+=+..+|.+++. |..++-......+.....++.+..++..+.- -+.+..|
T Consensus 250 s~a~vlr~rlekL~cnfpl~~nyFawqaFarRyp~p~Eg~lP~yl~~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vd 329 (414)
T COG5379 250 SVASVLRDRLEKLACNFPLKDNYFAWQAFARRYPYPGEGALPAYLDEGVYESIRQNLRRVAIHHADIIELLAGKPAGNVD 329 (414)
T ss_pred cHHHHHHHHHHHHhcCCccchhHHHHHHHHhcCCCCCCCCCChhhchhhHHHHHhhhhheeeecccHHHHhccCCCCCcc
Confidence 344455566655443222223333333335556766554 6666666666666544467777777765532 2457788
Q ss_pred hHhhhhccccccc--HHHHHHHHHHhcCCCcEEEEEeeccc
Q psy889 122 AYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHV 160 (167)
Q Consensus 122 ~v~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 160 (167)
.++...+-.|+++ ...+++++.+.+.+|..+++-...++
T Consensus 330 r~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~ 370 (414)
T COG5379 330 RYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEV 370 (414)
T ss_pred eEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccce
Confidence 8888777777765 68999999999999999999665444
No 368
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.85 E-value=28 Score=27.63 Aligned_cols=39 Identities=8% Similarity=-0.153 Sum_probs=25.3
Q ss_pred eEEeee--cCCCchHHHHHHhhccCCCCCCCCCCCC-cEEEeeCChHHHHHHHH
Q psy889 2 YILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g--~G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~a~~ 52 (167)
+||=.| .|.|..+..++++. +. ++++++.+++-.+.+++
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~------------G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLL------------GCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHH
Confidence 344444 35666666666655 66 78888888776666654
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.96 E-value=49 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCcEEEEEe
Q psy889 138 ALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 138 ~l~~~~~~LkpgG~l~~~~ 156 (167)
.+....+.|+++|.++...
T Consensus 247 ~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 247 CIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHHHHHHhhcCCEEEEEc
Confidence 6777899999999988654
No 370
>PRK05650 short chain dehydrogenase; Provisional
Probab=59.74 E-value=55 Score=25.01 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=31.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
|+||=. +|+|.++..+++.+.+ .+.+++.++.+..-.+...+.+.
T Consensus 1 ~~vlVt-GasggIG~~la~~l~~---------~g~~V~~~~r~~~~~~~~~~~l~ 45 (270)
T PRK05650 1 NRVMIT-GAASGLGRAIALRWAR---------EGWRLALADVNEEGGEETLKLLR 45 (270)
T ss_pred CEEEEe-cCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 456644 4688888888887742 47789999988766665554443
No 371
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.46 E-value=67 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=28.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+||=.|+ +|.++..+++.+.+ .+.++++++.+++-.+...+..
T Consensus 7 ~vlItGa-~g~iG~~~a~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 7 KVAIIGV-SEGLGYAVAYFALK---------EGAQVCINSRNENKLKRMKKTL 49 (238)
T ss_pred EEEEECC-CchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 4555554 67788888877642 4778999998887665554333
No 372
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=58.70 E-value=31 Score=28.91 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=32.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
|+||=+|| |.++..++..+... ...+++..|.+.+.++.+...
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~--------~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN--------GDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHhh
Confidence 57888998 77888888776420 137899999998888777654
No 373
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=58.02 E-value=12 Score=30.13 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=32.2
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|+++..+.+.+... ...+++.+|.++..+-..++.+.
T Consensus 3 VTGa~GSIGseL~rql~~~--------~p~~lil~d~~E~~l~~l~~~l~ 44 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRY--------GPKKLILFDRDENKLYELERELR 44 (293)
T ss_dssp EETTTSHHHHHHHHHHHCC--------B-SEEEEEES-HHHHHHHHHHCH
T ss_pred EEccccHHHHHHHHHHHhc--------CCCeEEEeCCChhHHHHHHHHHh
Confidence 4578899999999887432 14679999999999999888874
No 374
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=56.85 E-value=1.3e+02 Score=25.82 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=37.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHH----HHHHHHHhcc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLD----VGEQRARDLF 58 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~----~a~~~~~~~~ 58 (167)
+|.=+|+||..++..+.-.+...++- +..++.-+|+++.-.+ .++.-.+..+
T Consensus 5 KI~iIGgGSt~tp~~v~g~l~~~e~l-----~~~el~L~Did~~r~~~i~~~~~~~v~~~g 60 (442)
T COG1486 5 KIVIIGGGSTYTPKLLLGDLARTEEL-----PVRELALYDIDEERLKIIAILAKKLVEEAG 60 (442)
T ss_pred eEEEECCCccccHHHHHHHHhcCccC-----CcceEEEEeCCHHHHHHHHHHHHHHHHhhC
Confidence 58889999999998887766432221 4678999999999888 4444444443
No 375
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.13 E-value=69 Score=23.83 Aligned_cols=43 Identities=14% Similarity=-0.026 Sum_probs=29.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+||= -+|+|.++..++.++.. .+.++++++.+........+.+
T Consensus 8 ~ilI-tGasg~iG~~l~~~l~~---------~g~~V~~~~r~~~~~~~~~~~l 50 (251)
T PRK12826 8 VALV-TGAARGIGRAIAVRLAA---------DGAEVIVVDICGDDAAATAELV 50 (251)
T ss_pred EEEE-cCCCCcHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 5664 45678888888887642 3678999998876555444444
No 376
>PRK07890 short chain dehydrogenase; Provisional
Probab=55.88 E-value=72 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=30.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|| +-.|+|.++..+++++.. .+.+++.++.++.-.+...+.+
T Consensus 7 ~vl-ItGa~~~IG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 7 VVV-VSGVGPGLGRTLAVRAAR---------AGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred EEE-EECCCCcHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHH
Confidence 444 556788888888887742 4788999998887665555444
No 377
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=55.39 E-value=21 Score=23.35 Aligned_cols=16 Identities=6% Similarity=0.015 Sum_probs=11.6
Q ss_pred eecCCCchHHHHHHhh
Q psy889 6 YLVFPGDIAFRFLNYV 21 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~ 21 (167)
+.||+|..|..+++++
T Consensus 4 ~~Cg~G~sTS~~~~ki 19 (96)
T cd05564 4 LVCSAGMSTSILVKKM 19 (96)
T ss_pred EEcCCCchHHHHHHHH
Confidence 5688888777766654
No 378
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=54.89 E-value=38 Score=26.51 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+...++.|+++|.++...
T Consensus 222 ~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 222 EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHHHHHHHhhccCCEEEEEc
Confidence 45678899999999998653
No 379
>PRK06194 hypothetical protein; Provisional
Probab=54.78 E-value=67 Score=24.70 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=30.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|| +-.|+|.++..+++.+.. .+.+++.+|.+...++...+.+
T Consensus 8 ~vl-VtGasggIG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 50 (287)
T PRK06194 8 VAV-ITGAASGFGLAFARIGAA---------LGMKLVLADVQQDALDRAVAEL 50 (287)
T ss_pred EEE-EeCCccHHHHHHHHHHHH---------CCCEEEEEeCChHHHHHHHHHH
Confidence 344 566788888888887642 4778999998876665554444
No 380
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=54.21 E-value=59 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=22.1
Q ss_pred cchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 118 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
+.+|+|+... .. .+...+++.+..++.++..+++.
T Consensus 69 ~~~D~viv~v--K~-~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 69 EPIHRLLLAC--KA-YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred cccCEEEEEC--CH-HhHHHHHHHHHhhCCCCCEEEEE
Confidence 4578776532 11 23566777888888888876653
No 381
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=54.20 E-value=35 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=26.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAML 47 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 47 (167)
.|+|.|.--|+.+..+++..-.-- ...+++++|++-.-+
T Consensus 72 lvIE~Gs~~GGSal~fA~~m~s~G-------q~~kvl~vdIdi~~~ 110 (237)
T COG3510 72 LVIEFGSRHGGSALFFANMMISIG-------QPFKVLGVDIDIKPL 110 (237)
T ss_pred eeEeeccccCchhhhhhHhHHhcC-------CCceEEEEecccCcC
Confidence 478999998888777766431100 146899999876553
No 382
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=53.99 E-value=41 Score=26.68 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+....+.|+++|.+++...
T Consensus 243 ~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HHHHHHHHHhhcCCEEEEEcC
Confidence 345667888999999987554
No 383
>PRK07102 short chain dehydrogenase; Provisional
Probab=53.67 E-value=82 Score=23.52 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=29.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+|+=. .|+|.++..+++.+.. .+.++++++.++.-.+...+.
T Consensus 3 ~vlIt-Gas~giG~~~a~~l~~---------~G~~Vi~~~r~~~~~~~~~~~ 44 (243)
T PRK07102 3 KILII-GATSDIARACARRYAA---------AGARLYLAARDVERLERLADD 44 (243)
T ss_pred EEEEE-cCCcHHHHHHHHHHHh---------cCCEEEEEeCCHHHHHHHHHH
Confidence 45644 5778888888887742 477899999888665544433
No 384
>PRK07806 short chain dehydrogenase; Provisional
Probab=53.50 E-value=78 Score=23.65 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=21.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
++|-. .|+|.++..+++.+.. .+.++++++.+.
T Consensus 8 ~vlIt-GasggiG~~l~~~l~~---------~G~~V~~~~r~~ 40 (248)
T PRK07806 8 TALVT-GSSRGIGADTAKILAG---------AGAHVVVNYRQK 40 (248)
T ss_pred EEEEE-CCCCcHHHHHHHHHHH---------CCCEEEEEeCCc
Confidence 34544 4677888888887642 366788877653
No 385
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=53.39 E-value=21 Score=27.81 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=15.8
Q ss_pred CCCcEEEeeCChHHHHHHHH
Q psy889 33 CAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 33 ~~~~~~~~D~s~~~~~~a~~ 52 (167)
...+++|.|.++..++.+.+
T Consensus 10 ~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 10 PDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp TTSEEEEE-SSHHHHHHHHH
T ss_pred CCeEEEEEeCCHHHHHHHHH
Confidence 36899999999999888864
No 386
>PRK07454 short chain dehydrogenase; Provisional
Probab=53.06 E-value=89 Score=23.25 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=28.4
Q ss_pred eeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 5 FYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 5 D~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
=+-.|+|.++..+++.+.. .+.++++++.++.-.+...+..
T Consensus 10 lItG~sg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 10 LITGASSGIGKATALAFAK---------AGWDLALVARSQDALEALAAEL 50 (241)
T ss_pred EEeCCCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 3445688898888887742 4678999998876655544433
No 387
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=52.94 E-value=72 Score=24.18 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
|+||=.|+ +|.++..+++.+.. .+.+++.++.++..++.+.+.++
T Consensus 1 m~vlItGa-s~gIG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 1 MNVLVTAS-SRGIGFNVARELLK---------KGARVVISSRNEENLEKALKELK 45 (259)
T ss_pred CeEEEEcC-CcHHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 67777775 56788888777642 47889999998877766655543
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=52.37 E-value=87 Score=23.28 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=30.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|| +-+|+|.++..+++.+.. .+.++++++.++..+....+.++
T Consensus 9 ~vl-ItGa~g~iG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~ 52 (250)
T PRK12939 9 RAL-VTGAARGLGAAFAEALAE---------AGATVAFNDGLAAEARELAAALE 52 (250)
T ss_pred EEE-EeCCCChHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 344 445688899998887742 47788899888776665555443
No 389
>KOG1098|consensus
Probab=51.91 E-value=14 Score=32.96 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=26.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCCh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (167)
.|||+||..|+-.....+.++ .+.-++|+|+-+
T Consensus 47 ~vlDLcaAPG~W~QVA~q~~p----------v~slivGvDl~p 79 (780)
T KOG1098|consen 47 VVLDLCAAPGGWLQVASQSMP----------VGSLIVGVDLVP 79 (780)
T ss_pred hheeeccCCcHHHHHHHHhCC----------CCceEEEeeeee
Confidence 589999999998888777775 367788999844
No 390
>PRK08324 short chain dehydrogenase; Validated
Probab=51.81 E-value=75 Score=28.44 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=28.3
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-.|+|.++..+++.+.. .+.+++.+|.++..++.+.+.+
T Consensus 427 VTGasggIG~~la~~L~~---------~Ga~Vvl~~r~~~~~~~~~~~l 466 (681)
T PRK08324 427 VTGAAGGIGKATAKRLAA---------EGACVVLADLDEEAAEAAAAEL 466 (681)
T ss_pred EecCCCHHHHHHHHHHHH---------CcCEEEEEeCCHHHHHHHHHHH
Confidence 445577888888877642 4778999999987766555443
No 391
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=51.63 E-value=82 Score=24.92 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEe
Q psy889 136 DKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+..+.+.|+++|.++...
T Consensus 238 ~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 238 PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEEc
Confidence 346677889999999987654
No 392
>KOG2811|consensus
Probab=51.59 E-value=24 Score=29.42 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=37.6
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEE---EeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVT---VADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 78 (167)
++|+|||-|.+++.++..+. ...++ .+|....-+..-+..... +++.++...-|++++.
T Consensus 186 ~vEFGAGrg~Ls~~vs~~l~-----------~~~~~l~vlvdR~s~R~K~D~k~~~~------~~~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 186 FVEFGAGRGELSRWVSDCLQ-----------IQNVYLFVLVDRKSSRLKFDRKLRNK------NSLVIKRIRIDIEDLK 247 (420)
T ss_pred EEEecCCchHHHHHHHHHhc-----------cccEEEEEeecccchhhhhhhhhhcc------CcchhheeEeeHHhcC
Confidence 68999999999999988874 33333 367655444444332221 1245667777777764
No 393
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=50.88 E-value=23 Score=30.84 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=30.0
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
||.|.++..+++.+.+ .+.+++.+|.+++.++.+++
T Consensus 423 ~G~G~~G~~la~~L~~---------~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 423 VGYGRVGSLLGEKLLA---------AGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred ECCChHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHH
Confidence 7888899999998742 36789999999998888874
No 394
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=50.87 E-value=41 Score=28.07 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=28.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+||-|++|..+.--.+.. ...+|+++|+|+......+-+...
T Consensus 38 ~vl~ItSaG~N~L~yL~~-------------~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 38 RVLTITSAGCNALDYLLA-------------GPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred eEEEEccCCchHHHHHhc-------------CCceEEEEeCCHHHHHHHHHHHHH
Confidence 577775555444333332 367899999999998887766543
No 395
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=50.30 E-value=79 Score=24.66 Aligned_cols=40 Identities=23% Similarity=0.070 Sum_probs=25.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
|+|.=+|+|. ++..++..+.. .+.+++.++.+++.++..+
T Consensus 1 m~I~IiG~G~--~G~~~a~~L~~---------~g~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 1 MKIAILGAGA--IGGLFGAALAQ---------AGHDVTLVARRGAHLDALN 40 (304)
T ss_pred CEEEEECCCH--HHHHHHHHHHh---------CCCeEEEEECChHHHHHHH
Confidence 6788888754 44555554421 2567999998776655544
No 396
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.16 E-value=77 Score=25.28 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.++.+.|+++|.++....
T Consensus 247 ~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 247 DTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred HHHHHHHHHhhcCCEEEEecc
Confidence 467888999999999986543
No 397
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=49.38 E-value=25 Score=31.07 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=29.9
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
||-|.++..+++.+.. .+.+++.+|.+++.++.+++
T Consensus 406 ~G~Gr~G~~va~~L~~---------~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 406 VGFGRFGQVIGRLLMA---------NKMRITVLERDISAVNLMRK 441 (601)
T ss_pred ecCchHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHh
Confidence 7888899999887742 36789999999999988864
No 398
>PRK06949 short chain dehydrogenase; Provisional
Probab=48.94 E-value=1e+02 Score=23.12 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=29.6
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
||-. .|+|.++..+++.+.. .+.++++++.+++.++.....+
T Consensus 12 ilIt-Gasg~IG~~~a~~l~~---------~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 12 ALVT-GASSGLGARFAQVLAQ---------AGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred EEEE-CCCcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 4444 4788888888887742 3678999999887766655544
No 399
>PRK08655 prephenate dehydrogenase; Provisional
Probab=48.50 E-value=66 Score=27.21 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=24.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAML 47 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 47 (167)
|+|.=+| |.|.++..++..+.. .+.+++++|.++...
T Consensus 1 MkI~IIG-G~G~mG~slA~~L~~---------~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 1 MKISIIG-GTGGLGKWFARFLKE---------KGFEVIVTGRDPKKG 37 (437)
T ss_pred CEEEEEe-cCCHHHHHHHHHHHH---------CCCEEEEEECChHHH
Confidence 6777776 456666666666531 256789999887654
No 400
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=48.21 E-value=26 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=25.5
Q ss_pred ccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEE
Q psy889 117 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155 (167)
Q Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (167)
...+|+|+... --.+...+++.+...+.+++.+++.
T Consensus 65 ~~~~D~viv~v---Ka~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 65 AGPYDLVIVAV---KAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp HSTESEEEE-S---SGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred cCCCcEEEEEe---cccchHHHHHHHhhccCCCcEEEEE
Confidence 46688887642 1235677888899999999877764
No 401
>PRK08339 short chain dehydrogenase; Provisional
Probab=47.81 E-value=1.1e+02 Score=23.38 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=29.5
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++.++++.+.. .+.+++.++.++..++...+.+.
T Consensus 13 ItGas~gIG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 13 TTASSKGIGFGVARVLAR---------AGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred EeCCCCcHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 455677888888887642 47889999998877766665543
No 402
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=47.13 E-value=1.1e+02 Score=23.00 Aligned_cols=40 Identities=5% Similarity=0.058 Sum_probs=29.0
Q ss_pred ecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
-.|+|.++..+++.+.. .+.+++.++.+...++...+.+.
T Consensus 18 tGa~g~IG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~i~ 57 (259)
T PRK08213 18 TGGSRGLGLQIAEALGE---------AGARVVLSARKAEELEEAAAHLE 57 (259)
T ss_pred ECCCchHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 34788889998887742 37789999988877666655543
No 403
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=46.96 E-value=19 Score=29.13 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=23.2
Q ss_pred chhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeec
Q psy889 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158 (167)
Q Consensus 119 ~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (167)
.+|+|+... -...+.+....|+++|.++.+...
T Consensus 211 gvDvv~D~v-------G~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 211 GVDVVLDTV-------GGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CceEEEECC-------CHHHHHHHHHHhccCCEEEEEecC
Confidence 467776532 245666788999999999886654
No 404
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=46.24 E-value=27 Score=28.38 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.+..+.|++||.++....
T Consensus 259 ~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 259 HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred HHHHHHHHHhcCCcEEEEeCC
Confidence 367778899999999987653
No 405
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=46.12 E-value=34 Score=23.96 Aligned_cols=32 Identities=19% Similarity=-0.057 Sum_probs=18.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA 45 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 45 (167)
+|+|+|-|.--.....++.. +.+++++|+.+.
T Consensus 16 kiVEVGiG~~~~vA~~L~~~------------G~dV~~tDi~~~ 47 (127)
T PF03686_consen 16 KIVEVGIGFNPEVAKKLKER------------GFDVIATDINPR 47 (127)
T ss_dssp EEEEET-TT--HHHHHHHHH------------S-EEEEE-SS-S
T ss_pred cEEEECcCCCHHHHHHHHHc------------CCcEEEEECccc
Confidence 78999888765444444433 688999999886
No 406
>KOG1269|consensus
Probab=45.88 E-value=36 Score=28.20 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=68.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-CC
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~~ 80 (167)
++||.+|+.+.....+.+.+. -..--|.++...++..++.+....... ....+...+|+...+ +.
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~r-----------v~kpGG~~i~~e~i~~~~~~~~~~~~~---~i~~~i~~gd~~~~~~~~ 248 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYR-----------VLKPGGLFIVKEWIKTAKLKKPNSEHV---DILLEIEGGDALPAETFN 248 (364)
T ss_pred EEEeecccCCcHHHHHHHHhc-----------ccCCCceEEeHHHHHhhhccCCCcccc---cccCceeccccccceecc
Confidence 789999999999999988874 344556777777777776554321100 001111111211111 11
Q ss_pred CCCCceeeeeeccccccCCCCceEEeecccCCCC-CCccchhhHhhhhcccccccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 81 SDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 81 ~~~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
...|+.... .+-....+.-+....+ ++...+|. ..+..++.+...++......++++|.+++.+..+
T Consensus 249 ~d~~~~~~~---------~~~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~ 316 (364)
T KOG1269|consen 249 TDVFDLLKS---------FGFEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIR 316 (364)
T ss_pred ccHHHHHhh---------ccchhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcC
Confidence 111110000 0000000111111111 12233333 3334456677788889999999999999877665
Q ss_pred cC
Q psy889 160 VN 161 (167)
Q Consensus 160 ~~ 161 (167)
..
T Consensus 317 ~~ 318 (364)
T KOG1269|consen 317 GL 318 (364)
T ss_pred cC
Confidence 43
No 407
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.77 E-value=97 Score=23.16 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=30.2
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++..+++++.. .+.++++++.++...+...+...
T Consensus 9 ItG~sg~iG~~la~~l~~---------~g~~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 9 VTGAASGIGLEIALALAK---------EGAKVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred EECCCchHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHHHH
Confidence 556789999999988742 47789999988877666554443
No 408
>PRK08703 short chain dehydrogenase; Provisional
Probab=45.48 E-value=1e+02 Score=22.95 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=30.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+||=.| |+|.++..+++++.. .+.+++.++.++...+...+.+
T Consensus 8 ~vlItG-~sggiG~~la~~l~~---------~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 8 TILVTG-ASQGLGEQVAKAYAA---------AGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred EEEEEC-CCCcHHHHHHHHHHH---------cCCEEEEEeCChHHHHHHHHHH
Confidence 455555 688888888887753 4778999999887665554444
No 409
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=45.47 E-value=1.2e+02 Score=22.29 Aligned_cols=43 Identities=12% Similarity=-0.034 Sum_probs=29.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+||=. +++|.++..+++.+.+ .+.++++++.++...+......
T Consensus 7 ~ilIt-Gasg~iG~~l~~~l~~---------~g~~v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 7 TALVT-GASRGIGRAIALRLAA---------DGAKVVIYDSNEEAAEALAAEL 49 (246)
T ss_pred EEEEE-CCCcHHHHHHHHHHHH---------CCCEEEEEeCChhHHHHHHHHH
Confidence 46644 4589999999887642 4677899998876655444433
No 410
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=45.47 E-value=19 Score=28.00 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEee
Q psy889 136 DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
...+.++.+.++++|.++..-.
T Consensus 198 ~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHHHHHHhcCCCEEEEecc
Confidence 3467788999999999987664
No 411
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.29 E-value=48 Score=27.65 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=31.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|+|+=+|+ |.++..+++.+.. .+.+++++|.+++.++.+++
T Consensus 1 m~viIiG~--G~ig~~~a~~L~~---------~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 1 MKIIIVGA--GQVGYTLAENLSG---------ENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHh---------CCCcEEEEECCHHHHHHHHh
Confidence 67777765 7899999887742 36789999999988777654
No 412
>PRK07814 short chain dehydrogenase; Provisional
Probab=44.73 E-value=1e+02 Score=23.43 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=29.6
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|=. +|+|.++.++++++.. .+.++++++.++...+...+.+
T Consensus 13 vlIt-GasggIG~~~a~~l~~---------~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 13 AVVT-GAGRGLGAAIALAFAE---------AGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred EEEE-CCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 4444 4688899998887743 4788999999877665555444
No 413
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=42.71 E-value=10 Score=25.29 Aligned_cols=18 Identities=6% Similarity=-0.204 Sum_probs=12.9
Q ss_pred EeeecCCCchHHHHHHhh
Q psy889 4 LFYLVFPGDIAFRFLNYV 21 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~ 21 (167)
+|+|||.|..--+..+.+
T Consensus 7 IDIGcG~GNTmda~fRsc 24 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRSC 24 (124)
T ss_pred cccccCCCcchhhhhhcc
Confidence 699999998755544433
No 414
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=42.42 E-value=65 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.3
Q ss_pred CCCcEEEeeCChHHHHHHHHHHHh
Q psy889 33 CAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 33 ~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
.+.+++..|.+++.++.++++++.
T Consensus 21 ~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 21 AGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp TTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECChHHHHhhhhHHHH
Confidence 478999999999999999988765
No 415
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=41.94 E-value=55 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+..+.+.++++|.++....
T Consensus 256 ~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 256 HPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred HHHHHHHHHhccCCEEEEECC
Confidence 466778899999999987553
No 416
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=41.71 E-value=79 Score=25.07 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=24.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCC--CcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCA--PHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~D~s~~~~~~a~ 51 (167)
+|.=+|+| .++..++..+.. .+ .+++++|.+++..+.++
T Consensus 8 ~I~IIG~G--~mG~sla~~l~~---------~g~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 8 RVALIGIG--LIGSSLARAIRR---------LGLAGEIVGADRSAETRARAR 48 (307)
T ss_pred EEEEEeeC--HHHHHHHHHHHh---------cCCCcEEEEEECCHHHHHHHH
Confidence 56667655 455555554421 12 37999999988766654
No 417
>PRK07904 short chain dehydrogenase; Provisional
Probab=41.24 E-value=1.3e+02 Score=22.85 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=27.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCC-CCcEEEeeCChHH-HHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRAM-LDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~-~~~a~~~~ 54 (167)
+||=.| |+|.++..+++++.. . +.+++.++.++.- ++.+.+.+
T Consensus 10 ~vlItG-as~giG~~la~~l~~---------~gg~~V~~~~r~~~~~~~~~~~~l 54 (253)
T PRK07904 10 TILLLG-GTSEIGLAICERYLK---------NAPARVVLAALPDDPRRDAAVAQM 54 (253)
T ss_pred EEEEEc-CCcHHHHHHHHHHHh---------cCCCeEEEEeCCcchhHHHHHHHH
Confidence 355555 478888888887631 2 3688888887663 55444444
No 418
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=41.19 E-value=1.4e+02 Score=23.56 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+.++.+.|+++|.++...
T Consensus 243 ~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 243 KAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred HHHHHHHHHhccCCEEEEEc
Confidence 45677889999999987653
No 419
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=41.17 E-value=84 Score=20.15 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=30.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
-|+|+=.|+|.....+.+++. ...-++.+-.++-++..+++...-.
T Consensus 4 LiiD~PPGTgD~~l~~~~~~~----------~~g~ivVTTPq~la~~dv~r~~~~~ 49 (81)
T PF10609_consen 4 LIIDLPPGTGDEHLTLMQYLP----------IDGAIVVTTPQELALADVRRAIDMF 49 (81)
T ss_dssp EEEE--SCSSSHHHHHHHHH------------SEEEEEE-CCC--HHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHhCC----------CCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 378999999999999999985 2456777777777777777666543
No 420
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=41.11 E-value=89 Score=28.47 Aligned_cols=44 Identities=14% Similarity=-0.019 Sum_probs=30.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+|-=+|+|+-...++..-.. .+.+++..|.+++.++.+.+++..
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~-----------~G~~V~l~d~~~~~l~~~~~~i~~ 380 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVD-----------KGLKTVLKDATPAGLDRGQQQVFK 380 (737)
T ss_pred EEEEECCCHhHHHHHHHHHh-----------CCCcEEEecCCHHHHHHHHHHHHH
Confidence 34556776544443333222 378999999999999998887754
No 421
>PLN02244 tocopherol O-methyltransferase
Probab=41.05 E-value=22 Score=28.92 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=25.9
Q ss_pred cccccccccCCCCCCCCceeeeeeccccccC
Q psy889 68 RFLEANAEELPIESDSYSAYTIAFGIRNIDI 98 (167)
Q Consensus 68 ~~~~~d~~~l~~~~~~fd~~~~~~~~~~~~~ 98 (167)
++..+|+.+++|+++.||.+.+.....++.+
T Consensus 171 ~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d 201 (340)
T PLN02244 171 SFQVADALNQPFEDGQFDLVWSMESGEHMPD 201 (340)
T ss_pred EEEEcCcccCCCCCCCccEEEECCchhccCC
Confidence 4677888899999999999999888777653
No 422
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=40.62 E-value=39 Score=30.02 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=28.8
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
||-|.++..+++.+.+ .+..++.+|.+++.++.+++
T Consensus 406 ~G~Gr~G~~va~~L~~---------~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 406 AGFGRFGQIVGRLLLS---------SGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred EecChHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHh
Confidence 6677788888887642 36789999999999988865
No 423
>PRK06125 short chain dehydrogenase; Provisional
Probab=40.39 E-value=1.6e+02 Score=22.20 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=29.4
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|=.| |+|.++..+++.+.. .+.+++.++.++...+.....+.
T Consensus 10 vlItG-~~~giG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 10 VLITG-ASKGIGAAAAEAFAA---------EGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred EEEeC-CCchHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 44444 577788888877642 47789999988876666555443
No 424
>KOG0919|consensus
Probab=40.11 E-value=28 Score=27.48 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=54.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCc-EEEeeCChHHHHHHHHHHHhcccCCCCCCcccccccccccCC-
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~l~- 78 (167)
.|||++-.|.|.+..++..+. ..+. +-++|+++.+-+.-+-+.. ..-..+.+++.+.
T Consensus 4 LrVlelysg~ggmhyal~~a~-----------ipaqiVaAiDvNtvANevY~~N~h----------~~L~k~~~I~~lt~ 62 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQ-----------IPAQIVAAIDVNTVANEVYAHNYH----------SNLVKTRNIQSLTV 62 (338)
T ss_pred eehhhhhhccchhhhhHhhhc-----------CchhhEEEEecchhHHHHHhcCcc----------cchhhccccceeeH
Confidence 489999999999998887655 2444 5589998866554443211 1234556677764
Q ss_pred --CCCCCCceeeeeeccccccCC
Q psy889 79 --IESDSYSAYTIAFGIRNIDIP 99 (167)
Q Consensus 79 --~~~~~fd~~~~~~~~~~~~~~ 99 (167)
|+.=.++.++++++-..++..
T Consensus 63 kefd~l~~~m~lMSPpCQPfTRi 85 (338)
T KOG0919|consen 63 KEFDKLQANMLLMSPPCQPFTRI 85 (338)
T ss_pred hhhhhcccceEeeCCCCCchhhh
Confidence 888888899999888776644
No 425
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=40.02 E-value=46 Score=27.79 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=29.3
Q ss_pred cCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
||.|.++..+++.+.. .+.+++.+|.+++.++..++.
T Consensus 237 iG~G~~g~~l~~~L~~---------~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 237 VGGGNIGYYLAKLLEK---------EGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred ECCCHHHHHHHHHHHh---------CCCeEEEEECCHHHHHHHHHH
Confidence 5668899999888742 367899999999988877664
No 426
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.80 E-value=99 Score=26.44 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=28.2
Q ss_pred CccchhhHhhhhc--ccccccHHHHHHHHHHhcCCCcEEEEEee
Q psy889 116 ESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 116 ~~~~~D~v~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
....||+|++--. ++.-..+-.-+.+++++++|.=.|+++|-
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 3445788876322 22233455667889999999999988774
No 427
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=39.10 E-value=1.6e+02 Score=22.00 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=30.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+||= -.|+|.++..+++++.. .+.+++.++.+++.++...+.+.
T Consensus 13 ~ilI-tGas~~IG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 13 VALV-TGSARGLGFEIARALAG---------AGAHVLVNGRNAATLEAAVAALR 56 (256)
T ss_pred EEEE-ECCCchHHHHHHHHHHH---------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 3444 45688888888887642 47889999998876665555443
No 428
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=38.48 E-value=67 Score=25.16 Aligned_cols=41 Identities=10% Similarity=-0.176 Sum_probs=26.9
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|+|.=+|+|. ++..++..+.. .+.+++++|.+++.++.+.+
T Consensus 1 m~I~IIG~G~--mG~sla~~L~~---------~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 1 MKIGIVGLGL--IGGSLGLDLRS---------LGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred CeEEEEeecH--HHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHH
Confidence 5677777654 55555444421 35689999999988777654
No 429
>PRK06172 short chain dehydrogenase; Provisional
Probab=38.28 E-value=1.4e+02 Score=22.28 Aligned_cols=44 Identities=18% Similarity=-0.053 Sum_probs=29.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+||=. .++|.++..+++.+.. .+.+++.++.++.-++...+.+.
T Consensus 9 ~ilIt-Gas~~iG~~ia~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 9 VALVT-GGAAGIGRATALAFAR---------EGAKVVVADRDAAGGEETVALIR 52 (253)
T ss_pred EEEEe-CCCchHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 34444 4677888888877642 47789999998876665555443
No 430
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=38.28 E-value=1.3e+02 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+..+.+.|+++|.++...
T Consensus 266 ~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 266 AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred HHHHHHHHHhccCCEEEEeC
Confidence 45678889999999988654
No 431
>PRK05866 short chain dehydrogenase; Provisional
Probab=38.24 E-value=1.4e+02 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=29.5
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
||= -.|+|.++.++++.+.. .+.+++.++.+.+.++...+.+
T Consensus 43 vlI-tGasggIG~~la~~La~---------~G~~Vi~~~R~~~~l~~~~~~l 84 (293)
T PRK05866 43 ILL-TGASSGIGEAAAEQFAR---------RGATVVAVARREDLLDAVADRI 84 (293)
T ss_pred EEE-eCCCcHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHH
Confidence 443 44678888888887642 4778999999887766655544
No 432
>KOG1209|consensus
Probab=38.23 E-value=66 Score=25.10 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=29.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV 49 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 49 (167)
.||-.||..|+++.+++.++.+ .+..++++-.+.+-...
T Consensus 9 ~VlItgcs~GGIG~ala~ef~~---------~G~~V~AtaR~~e~M~~ 47 (289)
T KOG1209|consen 9 KVLITGCSSGGIGYALAKEFAR---------NGYLVYATARRLEPMAQ 47 (289)
T ss_pred eEEEeecCCcchhHHHHHHHHh---------CCeEEEEEccccchHhh
Confidence 5889999999999999998853 46777777665444333
No 433
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=38.13 E-value=80 Score=28.63 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=30.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+|-=+|+|+-...++..-.. .+.+++..|.+++.++.+++++..
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~-----------~G~~V~l~d~~~~~l~~~~~~~~~ 358 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSAS-----------KGTPIVMKDINQHSLDLGLTEAAK 358 (714)
T ss_pred eEEEECCchHHHHHHHHHHh-----------CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34456666544444433333 378999999999999998877753
No 434
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=38.00 E-value=1.9e+02 Score=22.50 Aligned_cols=39 Identities=13% Similarity=-0.170 Sum_probs=22.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
|+|.=+|+|.-.. .++..+.. .+.+++.++. ++.++..+
T Consensus 1 mkI~IiG~G~iG~--~~a~~L~~---------~g~~V~~~~r-~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVGG--TFGGRLLE---------AGRDVTFLVR-PKRAKALR 39 (305)
T ss_pred CeEEEECCCHHHH--HHHHHHHH---------CCCceEEEec-HHHHHHHH
Confidence 6788887766443 33333321 2567888887 55555443
No 435
>PRK08267 short chain dehydrogenase; Provisional
Probab=37.85 E-value=1.6e+02 Score=22.14 Aligned_cols=39 Identities=18% Similarity=-0.069 Sum_probs=27.6
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+-.|+|.++..+++.+.. .+.+++.++.++..++.....
T Consensus 6 ItGasg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~ 44 (260)
T PRK08267 6 ITGAASGIGRATALLFAA---------EGWRVGAYDINEAGLAALAAE 44 (260)
T ss_pred EeCCCchHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHH
Confidence 445678888888887642 477899999888766655443
No 436
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.46 E-value=31 Score=25.75 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=30.4
Q ss_pred CCccchhhHhhhhccccc------------ccHHHHHHHHHHhcCCCcEEEEEeecc
Q psy889 115 IESDSYSAYTIAFGIRNV------------TRIDKALSEAYRVLKPGGRFLCLEFSH 159 (167)
Q Consensus 115 ~~~~~~D~v~~~~~~~~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (167)
...+..|+|+.++.++-+ .++++++.++.++|+++..++...-.+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 334556777766655422 346788888899999998888755443
No 437
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=37.20 E-value=1.6e+02 Score=21.91 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=28.8
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
||=. .|+|.++..+++++.+ .+.+++.++.+..........+
T Consensus 6 ilIt-Gas~~iG~~la~~l~~---------~g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 6 AIVT-GGGGGIGGATCRRFAE---------EGAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred EEEe-CCCChHHHHHHHHHHH---------CCCEEEEecCCHHHHHHHHHHH
Confidence 4444 4678888888887742 3678999998877665555444
No 438
>PRK08643 acetoin reductase; Validated
Probab=37.20 E-value=1.8e+02 Score=21.82 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=29.7
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++..+++.+.. .+.+++.++.+.+..+.....+.
T Consensus 7 ItGas~giG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 7 VTGAGQGIGFAIAKRLVE---------DGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred EECCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 455778888888887742 47789999988877666655543
No 439
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.14 E-value=1.6e+02 Score=21.82 Aligned_cols=43 Identities=12% Similarity=-0.072 Sum_probs=29.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++|=.| |+|.++..+++++.. .+.+++.++.++...+.....+
T Consensus 9 ~vlVtG-~sg~iG~~l~~~L~~---------~G~~Vi~~~r~~~~~~~~~~~~ 51 (239)
T PRK07666 9 NALITG-AGRGIGRAVAIALAK---------EGVNVGLLARTEENLKAVAEEV 51 (239)
T ss_pred EEEEEc-CCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 344444 688999998887642 4778999998876555444333
No 440
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.09 E-value=1.5e+02 Score=22.02 Aligned_cols=40 Identities=13% Similarity=-0.019 Sum_probs=28.4
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-.|+|.++..+++.+.+ .+.++++++.++.-.+.....+
T Consensus 10 ItGasg~iG~~l~~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 49 (251)
T PRK07231 10 VTGASSGIGEGIARRFAA---------EGARVVVTDRNEEAAERVAAEI 49 (251)
T ss_pred EECCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 446678888888887642 4778999999887666554443
No 441
>PRK06484 short chain dehydrogenase; Validated
Probab=37.02 E-value=1.9e+02 Score=24.57 Aligned_cols=39 Identities=5% Similarity=-0.111 Sum_probs=28.1
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+-.|+|.++..++..+.. .+.+++.++.++..++...+.
T Consensus 274 ItGas~gIG~~~a~~l~~---------~G~~V~~~~r~~~~~~~~~~~ 312 (520)
T PRK06484 274 ITGGARGIGRAVADRFAA---------AGDRLLIIDRDAEGAKKLAEA 312 (520)
T ss_pred EECCCcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHH
Confidence 455677888888887742 477899999887766655543
No 442
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=36.63 E-value=93 Score=23.20 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=29.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
+|+=+|.| .++..+++.+.. .+.+++++|.+++.++..++.
T Consensus 30 ~v~I~G~G--~vG~~~A~~L~~---------~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 30 TVAVQGLG--KVGYKLAEHLLE---------EGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred EEEEECCC--HHHHHHHHHHHH---------CCCEEEEEcCCHHHHHHHHHH
Confidence 45556664 788888877642 478999999998877766554
No 443
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=36.49 E-value=38 Score=27.04 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCcEEEEEee
Q psy889 136 DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
...+.+..+.|++||.+++..+
T Consensus 240 ~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 240 PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred HHHHHHHHHHhhcCCEEEEEcc
Confidence 3467788899999999988654
No 444
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=36.23 E-value=2.1e+02 Score=22.66 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.++.+.|+++|.++....
T Consensus 242 ~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 242 KALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred HHHHHHHHhhcCCCEEEEEcc
Confidence 457778899999999876543
No 445
>PRK09072 short chain dehydrogenase; Provisional
Probab=36.20 E-value=1.6e+02 Score=22.29 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=28.7
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-.|+|.++..+++++.. .+.++++++.++..++.....+
T Consensus 10 ItG~s~~iG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 10 LTGASGGIGQALAEALAA---------AGARLLLVGRNAEKLEALAARL 49 (263)
T ss_pred EECCCchHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHH
Confidence 445678888888887642 4788999999887766555443
No 446
>PRK06482 short chain dehydrogenase; Provisional
Probab=36.17 E-value=1.6e+02 Score=22.46 Aligned_cols=40 Identities=8% Similarity=-0.128 Sum_probs=28.3
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+|| +..|+|.++..+++++.. .+.++++++.+++.++..+
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~---------~g~~v~~~~r~~~~~~~~~ 43 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLA---------RGDRVAATVRRPDALDDLK 43 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHH
Confidence 355 555688999999888742 4678889988876655444
No 447
>PRK07677 short chain dehydrogenase; Provisional
Probab=36.09 E-value=1.9e+02 Score=21.72 Aligned_cols=43 Identities=5% Similarity=0.040 Sum_probs=29.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++| +-+|+|.++..+++.+.. .+.+++.++.+....+...+.+
T Consensus 3 ~~l-ItG~s~giG~~ia~~l~~---------~G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 3 VVI-ITGGSSGMGKAMAKRFAE---------EGANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred EEE-EeCCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 455 445577788888877642 4778999998877666555444
No 448
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.73 E-value=2e+02 Score=22.11 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=29.3
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++.+++..+.. .+.+++.++.++.-++...+.+.
T Consensus 11 VTGas~gIG~ala~~La~---------~G~~Vv~~~r~~~~l~~~~~~l~ 51 (275)
T PRK05876 11 ITGGASGIGLATGTEFAR---------RGARVVLGDVDKPGLRQAVNHLR 51 (275)
T ss_pred EeCCCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 556678888888887742 47889999988876665554443
No 449
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=35.59 E-value=1.9e+02 Score=21.64 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=30.3
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-+|+|.++..++..+.. .+.+++.++.++...+...+.+.
T Consensus 12 ItGasg~iG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 12 VTGAASGIGKEIALELAR---------AGAAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred EECCCChHHHHHHHHHHH---------CCCeEEEEeCChHHHHHHHHHHH
Confidence 667788899888887742 47789999998876666655553
No 450
>PRK05854 short chain dehydrogenase; Provisional
Probab=35.54 E-value=2.2e+02 Score=22.46 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=29.6
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++.+++..+.. .+.+++.+..+..-.+.+.+.+.
T Consensus 19 ITGas~GIG~~~a~~La~---------~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 19 VTGASDGLGLGLARRLAA---------AGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred EeCCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 556678888888887742 47889999888776666655553
No 451
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=35.42 E-value=82 Score=28.04 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=9.7
Q ss_pred eEEeeecCCCchHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLN 19 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~ 19 (167)
+|| +.||+|.-|..+++
T Consensus 508 KIL-vaCGsGiGTStmva 524 (602)
T PRK09548 508 RIL-AVCGQGQGSSMMMK 524 (602)
T ss_pred EEE-EECCCCchHHHHHH
Confidence 444 45777766555544
No 452
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=35.33 E-value=1.9e+02 Score=21.68 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=28.6
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+||=.| |+|.++..+++.+.. .+.+++.++.+....+...+.+
T Consensus 13 ~vlVtG-~s~gIG~~la~~l~~---------~G~~vv~~~r~~~~~~~~~~~l 55 (255)
T PRK06113 13 CAIITG-AGAGIGKEIAITFAT---------AGASVVVSDINADAANHVVDEI 55 (255)
T ss_pred EEEEEC-CCchHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHHH
Confidence 345454 677888888777642 4778888888777666554444
No 453
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=35.20 E-value=69 Score=25.47 Aligned_cols=41 Identities=10% Similarity=-0.058 Sum_probs=24.0
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
+|.=+| .|.++..+++.+... ....++++.|.+.+.++.+.
T Consensus 5 ~v~IvG--~GliG~s~a~~l~~~-------g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 5 KVGIVG--LGLMGGSLARALKEA-------GLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred EEEEEC--CchHHHHHHHHHHHc-------CCeEEEEeecCcHHHHHHHh
Confidence 445555 555555555555310 02456788888887777665
No 454
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=35.14 E-value=1.3e+02 Score=24.06 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCcEEEEEe
Q psy889 137 KALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~ 156 (167)
..+....+.|+++|.++...
T Consensus 261 ~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 261 AAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred HHHHHHHHHhccCCEEEEEc
Confidence 35677889999999998654
No 455
>PRK07326 short chain dehydrogenase; Provisional
Probab=35.09 E-value=1.2e+02 Score=22.32 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=29.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+||=.| |+|.++..+++++.. .+.++++++.++.......+.+
T Consensus 8 ~ilItG-atg~iG~~la~~l~~---------~g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 8 VALITG-GSKGIGFAIAEALLA---------EGYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred EEEEEC-CCCcHHHHHHHHHHH---------CCCEEEEeeCCHHHHHHHHHHH
Confidence 455554 688999999887742 3678999998876655544433
No 456
>PRK06181 short chain dehydrogenase; Provisional
Probab=34.98 E-value=2e+02 Score=21.67 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=29.4
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|| +..|+|.++..+++++.. .+.+++.++.++.-.+...+.+
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~---------~g~~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLAR---------AGAQLVLAARNETRLASLAQEL 45 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 344 456778888888887642 4678999998876655554444
No 457
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=34.92 E-value=1.9e+02 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCCcEEEEEe
Q psy889 138 ALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 138 ~l~~~~~~LkpgG~l~~~~ 156 (167)
.+..+.+.|+++|.++...
T Consensus 269 ~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 269 TFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred HHHHHHHHHhcCCEEEEEc
Confidence 5677889999999988654
No 458
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=34.90 E-value=77 Score=24.91 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=28.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|.=+|+| .++..++..+.. .+.+++.+|.+++.++.+++++.
T Consensus 5 ~I~ViGaG--~mG~~iA~~la~---------~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 5 VIGVVGSG--VMGQGIAQVFAR---------TGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred EEEEECcc--HHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 34555555 455555544421 36689999999999988776554
No 459
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=34.69 E-value=2e+02 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEee
Q psy889 136 DKALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~ 157 (167)
...+..+.+.|+++|.++....
T Consensus 243 ~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 243 PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred HHHHHHHHHHHhcCCEEEEEec
Confidence 3466778889999999988654
No 460
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=34.50 E-value=72 Score=20.34 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=19.8
Q ss_pred eEEeeecCCC-chHHHHHHhhccCCCCCCCCCCCCcEEEeeC
Q psy889 2 YILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (167)
Q Consensus 2 ~vLD~g~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (167)
+||=+||.+| .++.+++..+. .+++.+++-+
T Consensus 41 ~VLViGaStGyGLAsRIa~aFg----------~gA~TiGV~f 72 (78)
T PF12242_consen 41 KVLVIGASTGYGLASRIAAAFG----------AGADTIGVSF 72 (78)
T ss_dssp EEEEES-SSHHHHHHHHHHHHC----------C--EEEEEE-
T ss_pred eEEEEecCCcccHHHHHHHHhc----------CCCCEEEEee
Confidence 7899999999 45666776664 4677777654
No 461
>PRK06914 short chain dehydrogenase; Provisional
Probab=34.36 E-value=1.9e+02 Score=22.01 Aligned_cols=40 Identities=10% Similarity=-0.182 Sum_probs=27.3
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-.|+|.++..++..+.. .+.++++++.++...+...+..
T Consensus 8 ItGasg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~ 47 (280)
T PRK06914 8 VTGASSGFGLLTTLELAK---------KGYLVIATMRNPEKQENLLSQA 47 (280)
T ss_pred EECCCchHHHHHHHHHHh---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 345777888888877642 4778999988876665554433
No 462
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=34.36 E-value=1.9e+02 Score=21.42 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=28.5
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-+++|.++..+++.+.. .+.++++++.++...+......
T Consensus 6 ItGa~g~lG~~l~~~l~~---------~g~~v~~~~r~~~~~~~~~~~~ 45 (255)
T TIGR01963 6 VTGAASGIGLAIALALAA---------AGANVVVNDLGEAGAEAAAKVA 45 (255)
T ss_pred EcCCcchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 445788899999887642 4778999999876665555443
No 463
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.34 E-value=2e+02 Score=21.56 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=30.8
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|| +-.|+|.++..+++++.+ .+.+++.++.++..++...+.+.
T Consensus 12 ~vl-ItGa~g~iG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 12 RAL-VTGSSQGIGYALAEGLAQ---------AGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred EEE-EECCcchHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 344 445788999999887742 47789999988876665555443
No 464
>PRK07774 short chain dehydrogenase; Provisional
Probab=33.77 E-value=1.9e+02 Score=21.46 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=28.4
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-.|+|.++..+++++.+ .+.+++.++.++.......+.+
T Consensus 11 ItGasg~iG~~la~~l~~---------~g~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 11 VTGAAGGIGQAYAEALAR---------EGASVVVADINAEGAERVAKQI 50 (250)
T ss_pred EECCCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 445788899999888743 4778999998876555544443
No 465
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=33.73 E-value=1.3e+02 Score=27.23 Aligned_cols=44 Identities=11% Similarity=-0.043 Sum_probs=29.8
Q ss_pred eEEeeecCCCchHHHHHHh-hccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 2 YILFYLVFPGDIAFRFLNY-VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
+|.=+|+|+-+...+..-. . .+..++..|.+++.++.+.+++..
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~-----------~G~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATK-----------AGLPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred EEEEECCchhhHHHHHHHHHH-----------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4556777764444433222 2 378899999999999998877754
No 466
>PRK07478 short chain dehydrogenase; Provisional
Probab=33.66 E-value=2e+02 Score=21.48 Aligned_cols=41 Identities=17% Similarity=0.035 Sum_probs=29.8
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++.++++.+.. .+.+++.++.++.-++...+.+.
T Consensus 11 ItGas~giG~~ia~~l~~---------~G~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 11 ITGASSGIGRAAAKLFAR---------EGAKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred EeCCCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 556778888888887642 47789999988877666655554
No 467
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.55 E-value=1.9e+02 Score=22.84 Aligned_cols=44 Identities=7% Similarity=0.000 Sum_probs=35.1
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhcc
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~~ 58 (167)
+-..+++++..+++.+.. ++.+++.+-.+++-++..++.++...
T Consensus 11 ITGASsGIG~~~A~~lA~---------~g~~liLvaR~~~kL~~la~~l~~~~ 54 (265)
T COG0300 11 ITGASSGIGAELAKQLAR---------RGYNLILVARREDKLEALAKELEDKT 54 (265)
T ss_pred EECCCchHHHHHHHHHHH---------CCCEEEEEeCcHHHHHHHHHHHHHhh
Confidence 445677888888887753 58899999999999999999887543
No 468
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=33.29 E-value=1.2e+02 Score=25.86 Aligned_cols=51 Identities=6% Similarity=-0.082 Sum_probs=35.2
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHh
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~ 56 (167)
|+|.=+|+|+. .+..+..-+-... ......+++-+|++++.++...+..+.
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~----~~l~~~ei~L~DId~~rl~~v~~l~~~ 51 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRK----EDFPLRELVLYDIDAERQEKVAEAVKI 51 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCc----ccCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 68889999997 7766666543111 111478999999999888876555543
No 469
>PRK07832 short chain dehydrogenase; Provisional
Probab=33.19 E-value=1.7e+02 Score=22.25 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=28.5
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
++|=. .|+|.++..+++++.. .+.+++.++.+++.++...+.+
T Consensus 2 ~vlIt-Gas~giG~~la~~la~---------~G~~vv~~~r~~~~~~~~~~~~ 44 (272)
T PRK07832 2 RCFVT-GAASGIGRATALRLAA---------QGAELFLTDRDADGLAQTVADA 44 (272)
T ss_pred EEEEe-CCCCHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 34444 4577888888887642 4778888888877665554444
No 470
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.08 E-value=86 Score=24.49 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=27.0
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
|-=+|+ |.++..++..+.. .+.+++++|.+++.++.++++++
T Consensus 6 I~VIG~--G~mG~~ia~~la~---------~g~~V~~~d~~~~~~~~~~~~i~ 47 (282)
T PRK05808 6 IGVIGA--GTMGNGIAQVCAV---------AGYDVVMVDISDAAVDRGLATIT 47 (282)
T ss_pred EEEEcc--CHHHHHHHHHHHH---------CCCceEEEeCCHHHHHHHHHHHH
Confidence 344444 5555555554421 35689999999999987765543
No 471
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.97 E-value=2e+02 Score=21.29 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=29.7
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
++|=.| |+|.++..+++.+.. .+.+++.++.++.-++.+.+.+.
T Consensus 7 ~~lItG-~~g~iG~~~a~~l~~---------~G~~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 7 VIVITG-GAQGLGRAMAEYLAQ---------KGAKLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred EEEEEC-CCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 355444 578888888877642 36789999998876665555443
No 472
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=32.67 E-value=92 Score=24.69 Aligned_cols=41 Identities=7% Similarity=0.005 Sum_probs=26.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|+|-=+|+| .++..++..+.. .+.++++.|.+++.++...+
T Consensus 1 M~Ig~IGlG--~mG~~la~~L~~---------~g~~V~~~dr~~~~~~~l~~ 41 (298)
T TIGR00872 1 MQLGLIGLG--RMGANIVRRLAK---------RGHDCVGYDHDQDAVKAMKE 41 (298)
T ss_pred CEEEEEcch--HHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHH
Confidence 566667765 455555554421 36679999999987666653
No 473
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.35 E-value=1.1e+02 Score=22.52 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
|+|-=+| .|+++..++..+.+ .+.+++|+|++++-++..++
T Consensus 1 M~I~ViG--lGyvGl~~A~~lA~---------~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 1 MKIAVIG--LGYVGLPLAAALAE---------KGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp -EEEEE----STTHHHHHHHHHH---------TTSEEEEE-S-HHHHHHHHT
T ss_pred CEEEEEC--CCcchHHHHHHHHh---------CCCEEEEEeCChHHHHHHhh
Confidence 5555564 45555555444432 37899999999988777653
No 474
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=32.22 E-value=40 Score=26.96 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+..+.+.|+++|.++....
T Consensus 253 ~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 253 ATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HHHHHHHHhccCCCEEEEEcc
Confidence 467788899999999887554
No 475
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=32.07 E-value=2.2e+02 Score=21.31 Aligned_cols=41 Identities=10% Similarity=-0.045 Sum_probs=28.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
|+||=. +|+|.++..+++++.. .+.++++++.++.-++...
T Consensus 1 ~~vlIt-Gasg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVT-GATAGFGECITRRFIQ---------QGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEE-CCCchHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHH
Confidence 556555 5677888888887642 4778999998876554443
No 476
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=32.00 E-value=84 Score=25.17 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=25.9
Q ss_pred eEEeeecCC-CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+||=.|+|. |..+..++++. +.+++++|.+++-++.+++
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~------------G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAM------------GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCeEEEEcCCHHHHHHHHH
Confidence 466667633 44444455544 6689999999988887764
No 477
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=31.60 E-value=78 Score=26.16 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=26.6
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~ 53 (167)
|+|+-+|+|.=+-+. +...+.. .+..++++|..+..++..++.
T Consensus 1 mki~~~GaGa~gr~~-~~~~l~~---------~g~~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 1 MKAVHFGAGNIGRGF-IGKLLAD---------NGFEVTFVDVNQELIDALNKR 43 (381)
T ss_pred CceEEECCchhhHHH-HHHHHHh---------CCCeEEEEECCHHHHHHHhcC
Confidence 789999887632211 1112211 267799999988877766543
No 478
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=31.25 E-value=97 Score=26.61 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=16.8
Q ss_pred CCCcEEEeeCChHHHHHHHHH
Q psy889 33 CAPHVTVADINRAMLDVGEQR 53 (167)
Q Consensus 33 ~~~~~~~~D~s~~~~~~a~~~ 53 (167)
.+.++++.|.+++.++...+.
T Consensus 23 ~G~~V~v~dr~~~~~~~l~~~ 43 (470)
T PTZ00142 23 RGFKISVYNRTYEKTEEFVKK 43 (470)
T ss_pred CCCeEEEEeCCHHHHHHHHHh
Confidence 367899999999988777654
No 479
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=30.96 E-value=1e+02 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
|.|.++..++..+.. .+.++++.|.+++.++.++++++
T Consensus 11 G~G~mG~~iA~~l~~---------~G~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 11 GAGQMGSGIAQLAAA---------AGMDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CCCHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 456666666665531 36789999999999887776553
No 480
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=30.72 E-value=2.3e+02 Score=21.12 Aligned_cols=42 Identities=19% Similarity=0.050 Sum_probs=28.2
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|=.| |+|.++..+++.+.+ .+.+++.++.++...+...+.+
T Consensus 3 ~lItG-~sg~iG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~l 44 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAK---------DGFAVAVADLNEETAKETAKEI 44 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHH
Confidence 44444 578888888887742 4778888888876555544444
No 481
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=30.69 E-value=58 Score=25.83 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCcEEEEEe
Q psy889 136 DKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 136 ~~~l~~~~~~LkpgG~l~~~~ 156 (167)
...+....+.|+++|.++...
T Consensus 239 ~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 239 AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred hHHHHHHHHHcccCCEEEEEe
Confidence 346777889999999988654
No 482
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=30.66 E-value=2.3e+02 Score=21.11 Aligned_cols=43 Identities=12% Similarity=-0.034 Sum_probs=29.5
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
||=. .|+|.++..+++++.. .+.++++++.+....+...+.+.
T Consensus 15 vlIt-G~~g~iG~~la~~l~~---------~G~~Vi~~~r~~~~~~~~~~~l~ 57 (247)
T PRK08945 15 ILVT-GAGDGIGREAALTYAR---------HGATVILLGRTEEKLEAVYDEIE 57 (247)
T ss_pred EEEe-CCCchHHHHHHHHHHH---------CCCcEEEEeCCHHHHHHHHHHHH
Confidence 4444 4688888888887742 36789999998766655544443
No 483
>PRK05867 short chain dehydrogenase; Provisional
Probab=30.46 E-value=2.3e+02 Score=21.17 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=28.3
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++.+++..+.. .+.+++.++.+.+.++...+.+.
T Consensus 14 VtGas~gIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 14 ITGASTGIGKRVALAYVE---------AGAQVAIAARHLDALEKLADEIG 54 (253)
T ss_pred EECCCchHHHHHHHHHHH---------CCCEEEEEcCCHHHHHHHHHHHH
Confidence 334567788888877642 47889999988877666555443
No 484
>PRK07831 short chain dehydrogenase; Provisional
Probab=30.34 E-value=2.4e+02 Score=21.25 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=28.0
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|=.|+..+.++..+++.+.. .+.+++.+|.+...++...+.++
T Consensus 20 vlItG~sg~gIG~~ia~~l~~---------~G~~V~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 20 VLVTAAAGTGIGSATARRALE---------EGARVVISDIHERRLGETADELA 63 (262)
T ss_pred EEEECCCcccHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHHH
Confidence 444443322677777776632 47788999988877776665554
No 485
>PLN02427 UDP-apiose/xylose synthase
Probab=30.30 E-value=1.3e+02 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=26.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCC-CCcEEEeeCChH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRA 45 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~ 45 (167)
|+|| +-.|+|.++..+++.+.. . +.+++++|.+..
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~---------~~g~~V~~l~r~~~ 50 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMT---------ETPHKVLALDVYND 50 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHh---------cCCCEEEEEecCch
Confidence 5667 567899999999998742 2 367999997654
No 486
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=30.22 E-value=2.7e+02 Score=22.35 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+..+.+.|+++|+++....
T Consensus 263 ~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 263 ATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred HHHHHHHHHhhcCCeEEEEec
Confidence 456788999999999886543
No 487
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.03 E-value=1.1e+02 Score=24.08 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=28.2
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+|.=+|+ |.++..++..+.. .+.+++..|.+++.++.+.++.
T Consensus 3 ~V~VIG~--G~mG~~iA~~la~---------~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGA--GVMGRGIAYVFAV---------SGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECc--cHHHHHHHHHHHh---------CCCcEEEEeCCHHHHHHHHHHH
Confidence 3445555 5555555554421 3678999999999999887654
No 488
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.03 E-value=2.9e+02 Score=22.12 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=29.8
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+-.|+|.++..+++.+.. .+.+++.++.+++.++...+.+.
T Consensus 13 ITGas~gIG~~la~~la~---------~G~~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 13 ITGASAGVGRATARAFAR---------RGAKVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred EECCCCHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHH
Confidence 445778888888887642 47789999998877776665554
No 489
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.84 E-value=2.2e+02 Score=22.85 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=24.9
Q ss_pred hhHhhhhcccccc--cHHHHHHHHHHhcCCCcEEEEEe
Q psy889 121 SAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 121 D~v~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 156 (167)
-+.++..++..++ ...++|+.|.....||..+++..
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 3444544444443 46888999999999998888743
No 490
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=29.83 E-value=77 Score=25.10 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=25.4
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
|+|-=+| .|.++..++..+.. .+.++++.|.+++..+.++
T Consensus 1 m~Ig~IG--lG~mG~~mA~~L~~---------~g~~v~v~dr~~~~~~~~~ 40 (299)
T PRK12490 1 MKLGLIG--LGKMGGNMAERLRE---------DGHEVVGYDVNQEAVDVAG 40 (299)
T ss_pred CEEEEEc--ccHHHHHHHHHHHh---------CCCEEEEEECCHHHHHHHH
Confidence 4555555 55566666665531 3567889999887665543
No 491
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.68 E-value=2.1e+02 Score=25.48 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=35.1
Q ss_pred EeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHHhc
Q psy889 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (167)
Q Consensus 4 LD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~~~ 57 (167)
+=+-.|+|+++..+.+.+... ...+++..|.++..+-.....+...
T Consensus 253 vLVTGagGSiGsel~~qil~~--------~p~~i~l~~~~E~~~~~i~~el~~~ 298 (588)
T COG1086 253 VLVTGGGGSIGSELCRQILKF--------NPKEIILFSRDEYKLYLIDMELREK 298 (588)
T ss_pred EEEeCCCCcHHHHHHHHHHhc--------CCCEEEEecCchHHHHHHHHHHHhh
Confidence 335678899999998876421 2578999999999988888877653
No 492
>PLN00203 glutamyl-tRNA reductase
Probab=29.35 E-value=1.6e+02 Score=25.70 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=26.1
Q ss_pred eEEeeecCCCchHHHHHHhhccCCCCCCCCCCC-CcEEEeeCChHHHHHHHH
Q psy889 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCA-PHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 2 ~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~a~~ 52 (167)
+|+=+|+ |.++..++.++.. .+ .+++.++.+.+..+....
T Consensus 268 kVlVIGA--G~mG~~~a~~L~~---------~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 268 RVLVIGA--GKMGKLLVKHLVS---------KGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred EEEEEeC--HHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHH
Confidence 4555655 7788888777642 23 368899988766555443
No 493
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.21 E-value=2.5e+02 Score=21.09 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=30.4
Q ss_pred EEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHHH
Q psy889 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (167)
Q Consensus 3 vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~~ 55 (167)
+|=. .|+|.++.++++.+.. .+.+++.++.++..++...+.+.
T Consensus 10 vlVt-Gas~gIG~~~a~~l~~---------~G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 10 ALVT-GAAQGIGAAIARAFAR---------EGAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred EEEE-CCCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 4444 4567888888887642 47889999998877766665554
No 494
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=29.18 E-value=66 Score=25.01 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCcEEEEEe
Q psy889 138 ALSEAYRVLKPGGRFLCLE 156 (167)
Q Consensus 138 ~l~~~~~~LkpgG~l~~~~ 156 (167)
.+.++.+.++++|.++...
T Consensus 247 ~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 247 TWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred HHHHHHHHhhcCCEEEEEe
Confidence 4567788899999988654
No 495
>PRK06940 short chain dehydrogenase; Provisional
Probab=28.80 E-value=2.7e+02 Score=21.38 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=25.6
Q ss_pred CchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 11 G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
|.++.++++.+. .+.+++.+|.++..++...+.+
T Consensus 11 ~gIG~~la~~l~----------~G~~Vv~~~r~~~~~~~~~~~l 44 (275)
T PRK06940 11 GGIGQAIARRVG----------AGKKVLLADYNEENLEAAAKTL 44 (275)
T ss_pred ChHHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHH
Confidence 679999998874 4788999999877665555444
No 496
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=28.62 E-value=1.2e+02 Score=23.94 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=25.5
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHH
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE 51 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~ 51 (167)
|+|-=+|+ |.++..++..+.. .+.++++.|.+++.++.+.
T Consensus 1 m~Ig~IGl--G~MG~~mA~~L~~---------~g~~v~v~dr~~~~~~~~~ 40 (301)
T PRK09599 1 MQLGMIGL--GRMGGNMARRLLR---------GGHEVVGYDRNPEAVEALA 40 (301)
T ss_pred CEEEEEcc--cHHHHHHHHHHHH---------CCCeEEEEECCHHHHHHHH
Confidence 56666655 4566656555431 3667999999987766553
No 497
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=28.44 E-value=2.1e+02 Score=21.51 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=27.8
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~ 52 (167)
+-.|+|.++..+++.+.. .+.+++.+|.+....+...+
T Consensus 11 ItGas~~iG~~ia~~l~~---------~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 11 LTGAASGIGEAVAERYLA---------EGARVVIADIKPARARLAAL 48 (257)
T ss_pred EeCCCchHHHHHHHHHHH---------cCCEEEEEcCCHHHHHHHHH
Confidence 445788889999888743 47789999988776655443
No 498
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=28.38 E-value=3e+02 Score=21.68 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=27.7
Q ss_pred eecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeCChHHHHHHHHHH
Q psy889 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (167)
Q Consensus 6 ~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~a~~~~ 54 (167)
+-.|+|.++.++++.+.. .+.+++.++.+..-.+.+.+.+
T Consensus 11 VTGas~gIG~~~a~~L~~---------~G~~V~~~~r~~~~~~~~~~~l 50 (322)
T PRK07453 11 ITGASSGVGLYAAKALAK---------RGWHVIMACRNLKKAEAAAQEL 50 (322)
T ss_pred EEcCCChHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHh
Confidence 445678888888887742 4778999988876655554443
No 499
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=28.27 E-value=95 Score=25.43 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCcEEEEEee
Q psy889 137 KALSEAYRVLKPGGRFLCLEF 157 (167)
Q Consensus 137 ~~l~~~~~~LkpgG~l~~~~~ 157 (167)
..+.+..+.+++||.++....
T Consensus 254 ~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 254 HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred HHHHHHHHhhcCCCEEEEEcc
Confidence 467788899999999987654
No 500
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=28.20 E-value=2e+02 Score=22.62 Aligned_cols=32 Identities=19% Similarity=0.030 Sum_probs=23.0
Q ss_pred CeEEeeecCCCchHHHHHHhhccCCCCCCCCCCCCcEEEeeC
Q psy889 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (167)
Q Consensus 1 ~~vLD~g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (167)
|+||=. .|+|.++.++++.+.. .+.++++++.
T Consensus 1 m~vlVt-GatG~iG~~l~~~L~~---------~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVT-GGSGYIGSHTCVQLLQ---------NGHDVVILDN 32 (338)
T ss_pred CeEEEE-CCCChHHHHHHHHHHH---------CCCeEEEEec
Confidence 677744 5688899998887742 3667888874
Done!