RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy889
(167 letters)
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 126 bits (320), Expect = 7e-37
Identities = 50/156 (32%), Positives = 63/156 (40%), Gaps = 50/156 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V K V D + ML VG ++ RDL
Sbjct: 63 GDLAIALAKAVGK----------TGEVVGLDFSEGMLAVGREKLRDLGLSG--------- 103
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
+ F++ +AE LP +S+ A TIAFG+R
Sbjct: 104 -------------------------------NVEFVQGDAEALPFPDNSFDAVTIAFGLR 132
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 166
NV IDKAL E YRVLKPGGR + LEFS N L+
Sbjct: 133 NVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLK 168
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 111 bits (280), Expect = 6e-31
Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 52/152 (34%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V V DI+ +ML+V ++ +
Sbjct: 63 GDMALLLAKSVGTG-----------EVVGLDISESMLEVAREKLKK-------------- 97
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G++N+ F+ +AE LP +S+ A TI+FG+R
Sbjct: 98 --------------------KGVQNV-------EFVVGDAENLPFPDNSFDAVTISFGLR 130
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
NVT IDKAL E YRVLKPGGR L LEFS +N
Sbjct: 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 110 bits (276), Expect = 2e-30
Identities = 52/156 (33%), Positives = 70/156 (44%), Gaps = 53/156 (33%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A K P+ VT D + ML+V ++++
Sbjct: 51 GDLAIELA----KSAPDRGK------VTGVDFSSEMLEVAKKKSEL-------------- 86
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
L IE F++A+AE LP E +S+ A TIAFG+R
Sbjct: 87 -----PLNIE------------------------FIQADAEALPFEDNSFDAVTIAFGLR 117
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 166
NVT I KAL E YRVLKPGGR + LEFS N++L+
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLK 153
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 106 bits (267), Expect = 4e-29
Identities = 51/155 (32%), Positives = 65/155 (41%), Gaps = 51/155 (32%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD F + + V DIN ML GE++A++
Sbjct: 59 GDWTFGLSDSAGS----------SGKVVGLDINENMLKEGEKKAKEE------------- 95
Query: 71 EANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 130
G NI+ FL+ NAEELP E DS+ TI+FG+R
Sbjct: 96 ---------------------GKYNIE-------FLQGNAEELPFEDDSFDIVTISFGLR 127
Query: 131 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
N K L EA+RVLKPGGR +CLEFS N +L
Sbjct: 128 NFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLL 162
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 61.7 bits (150), Expect = 3e-12
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 43/132 (32%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L+E P HV D + ML VG Q+ +D
Sbjct: 63 LAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----------------------------- 93
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
G+ N+++ + NA ELP + +S+ TI FG+RNV + L E YRV+
Sbjct: 94 -----GLHNVEL-------VHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVV 141
Query: 147 KPGGRFLCLEFS 158
KPGG+ +CLE S
Sbjct: 142 KPGGKVVCLETS 153
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 58.1 bits (141), Expect = 7e-12
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+F+ +AE+LP +S+ + + ++ ++AL E RVLKPGG+ +
Sbjct: 38 RAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase.
Length = 160
Score = 54.3 bits (130), Expect = 9e-10
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
+ ++E +A +LP + + A T+ +G+RNV +A+ E YRVLKPG R L+F+ N
Sbjct: 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQ 87
Query: 163 SM 164
S+
Sbjct: 88 SV 89
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 54.9 bits (132), Expect = 1e-09
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
+ ++E +A +LP + + A T+ +G+RNV KA+ E YRVLKPG R L+F+
Sbjct: 129 IEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188
Query: 163 ----SMLQW 167
SM +W
Sbjct: 189 PFTTSMQEW 197
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 44.9 bits (107), Expect = 4e-06
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
P + F+ +A+ LP S+ A ++++ +AL+E RVL+PGGR + L+
Sbjct: 68 GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 42.0 bits (99), Expect = 2e-05
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 101 PRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
+ F++ + EELP +E +S+ + ++ DK L E RVLKPGG + +
Sbjct: 54 ENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113
Query: 158 SHVNN 162
++
Sbjct: 114 VLLSE 118
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 39.6 bits (93), Expect = 7e-05
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALS 140
S + + P++RF+ A+A +LP E S+ A + ++ L
Sbjct: 28 ISKEALELAKERLRDKGPKVRFVVADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLR 87
Query: 141 EAYRVLKPGG 150
EA R+L+PGG
Sbjct: 88 EAARLLRPGG 97
Score = 35.4 bits (82), Expect = 0.002
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 35 PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG 92
VT DI++ L++ ++R RD P++RF+ A+A +LP E S+ A
Sbjct: 21 SSVTGVDISKEALELAKERLRD------KGPKVRFVVADARDLPFEEGSFDLVICAGL 72
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 38.2 bits (89), Expect = 2e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 100 NPRLRFLEANAEELPIESD-SYS-AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ L+ +AEELP E+D S+ + V + + L EA R+LKPGG +
Sbjct: 46 ADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 39.5 bits (93), Expect = 3e-04
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 105 FLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRF 152
F E LP+ +S I I N ++ EA+RVLKPGGRF
Sbjct: 132 FRLGEIEALPVADNS--VDVI---ISNCVINLSPDKERVFKEAFRVLKPGGRF 179
>gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase.
Length = 340
Score = 39.5 bits (92), Expect = 4e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 104 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151
+ +E +AE+LP +D Y A I + + EAYRVLK GG+
Sbjct: 163 KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 33.4 bits (77), Expect = 0.029
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ ++F+ +AE+LP+E S+ ++ + +ALSE RVLKPGG F
Sbjct: 79 SENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 32.3 bits (74), Expect = 0.037
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
PR+ F++ +A + + + A I G ++ + L +LKPGGR +
Sbjct: 51 PRITFVQGDAPDALDLLEGFDAVFIGGGGGDL---LELLDALASLLKPGGRLV 100
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 31.2 bits (71), Expect = 0.20
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 108 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 141
AN + LP+ S SY +T+A T I+KALS
Sbjct: 153 ANEKGLPVLSTSYDTFTVA------TMINKALSN 180
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 31.0 bits (67), Expect = 0.24
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 97 DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
+ +A LP E + I+ + ++ KAL E RVLKPGGR + +
Sbjct: 96 GLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSD 155
Query: 157 FSHVNNSMLQW 167
+
Sbjct: 156 LLRDGLLEGRL 166
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial. This
model describes bacterial (and mitochondrial and
chloroplast) class of ribosomal protein L3. A separate
model describes the archaeal form, where both belong to
Pfam family pfam00297. The name is phrased to meet the
needs of bacterial genome annotation. Organellar forms
typically will have transit peptides, N-terminal to the
region modeled here.
Length = 202
Score = 30.1 bits (69), Expect = 0.40
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 115 IESDSYSAYTIAFGIRNVTRIDKALS--------EAYRVLK 147
+E D YSA + FG + R++K + E R L+
Sbjct: 38 VEKDGYSAVQLGFGEKKEKRVNKPEAGHFAKAGVEPKRHLR 78
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 30.2 bits (68), Expect = 0.55
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 131 NVTRIDKALSEAYRVLKPGGRFL 153
N I K L AY VLKPGGR +
Sbjct: 512 NHEVIKKGLQSAYEVLKPGGRII 534
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 28.9 bits (65), Expect = 0.58
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 42/118 (35%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES-DSYSAYTIAFGIR 94
T DI+ A L+ +R L + R+R +A +L S D +A
Sbjct: 22 EYTGVDISPAALEAAAERLAAL--GLLDAVRVRLDVLDAIDLDPGSFD----VVVASN-- 73
Query: 95 NIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
L + L R+LKPGG
Sbjct: 74 ----------VLHH-----------------------LADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 28.1 bits (63), Expect = 1.2
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI 125
L +E N FG+ NI I +E +A E P D
Sbjct: 55 ALDLIERNLR--------------RFGVSNIVI-------VEGDAPEAPE--DLLPDPDA 91
Query: 126 AFGIRNVTRIDKALSEAYRVLKPGGR 151
F + + + L R L+PGGR
Sbjct: 92 VFVGGSGGLLQEILEAVERRLRPGGR 117
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 28.6 bits (64), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 138 ALSEAYRVLKPGGR 151
AL E YRV++PGG
Sbjct: 122 ALRELYRVVRPGGV 135
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated.
Length = 210
Score = 28.5 bits (65), Expect = 1.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 115 IESDSYSAYTIAFGIRNVTRIDKAL--------SEAYRVLK 147
+E D Y+A + FG + R++K E R L+
Sbjct: 41 VEKDGYNAVQLGFGDKKEKRVNKPEAGHFAKAGVEPKRHLR 81
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 28.1 bits (63), Expect = 1.8
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 116 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ DS Y + +++ L E RVLKPGG
Sbjct: 21 DKDSIEEY--------LEWLEEWLKEVRRVLKPGGSIFI 51
>gnl|CDD|232905 TIGR00284, TIGR00284, dihydropteroate synthase-related protein.
This protein has been found so far only in the Archaea,
and in particular in those archaea that lack a
bacterial-type dihydropteroate synthase. The central
region of this protein shows considerable homology to
the amino-terminal half of dihydropteroate synthases,
while the carboxyl-terminal region shows homology to the
small, uncharacterized protein slr0651 of Synechocystis
PCC6803 [Unknown function, General].
Length = 499
Score = 28.0 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG 50
P DI R DK P E + V I +M G
Sbjct: 381 PKDIGTRLFVVKDKRRPPEPVEPPGERINVDYIEPSMDRTG 421
>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin
of TRX) subfamily; PICOT is a protein that interacts
with protein kinase C (PKC) theta, a calcium
independent PKC isoform selectively expressed in
skeletal muscle and T lymphocytes. PICOT contains an
N-terminal TRX-like domain, which does not contain the
catalytic CXXC motif, followed by one to three
glutaredoxin domains. The TRX-like domain is required
for interaction with PKC theta. PICOT inhibits the
activation of c-Jun N-terminal kinase and the
transcription factors, AP-1 and NF-kB, induced by PKC
theta or T-cell activating stimuli.
Length = 97
Score = 26.9 bits (60), Expect = 2.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 45 AMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY 84
M V E+ A++ P + FL AEELP S+ +
Sbjct: 31 QMNQVFEELAKE------AFPSVLFLSIEAEELPEISEKF 64
Score = 26.9 bits (60), Expect = 2.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 99 PNPRLRFLEANAEELPIESDSY---SAYTIAFGIRNVTRID 136
P + FL AEELP S+ + + T F RN T +D
Sbjct: 43 AFPSVLFLSIEAEELPEISEKFEITAVPTFVF-FRNGTIVD 82
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 27.0 bits (60), Expect = 3.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 101 PRLRFLEANAEELP-IESDSYSA--------YTIAFGIRNVTRIDKALSEAYRVLKPGGR 151
PR+R + +A EL + S+ N D+ L+ A R+LKPGG
Sbjct: 51 PRVRVVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGV 110
Query: 152 FLCL 155
+ +
Sbjct: 111 LVVI 114
>gnl|CDD|216765 pfam01888, CbiD, CbiD. CbiD is essential for cobalamin
biosynthesis in both S. typhimurium and B. megaterium,
no functional role has been ascribed to the protein. The
CbiD protein has a putative S-AdoMet binding site. It is
possible that CbiD might have the same role as CobF in
undertaking the C-1 methylation and deacylation
reactions required during the ring contraction process.
Length = 261
Score = 27.0 bits (60), Expect = 4.5
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 59 KVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPN 100
KV + P R LE E+ I A + D+ N
Sbjct: 33 KVTIETPSGRTLEIAVEQGEIGGHKALAIVRKDPGDDPDVTN 74
>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function
unknown].
Length = 151
Score = 26.5 bits (59), Expect = 4.8
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 48 DVGEQRARDLFKVPV---PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNP 101
D+ E +F VPV P L + LPI + A IA + ++ P P
Sbjct: 2 DMIEVEVVGIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRP 58
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 26.8 bits (60), Expect = 4.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 135 IDKALSEAYRVLKPGGRFLCL 155
ID+ L E R LKPGGR L L
Sbjct: 127 IDRFLDEVGRYLKPGGRILLL 147
>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase. This
family consists of several uncharacterized eukaryotic
proteins which are related to methyltransferases
pfam01209.
Length = 219
Score = 26.7 bits (59), Expect = 5.0
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 89 IAFGIRN------IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 142
IAF R D+ R + + +P+E +S + T I L EA
Sbjct: 86 IAFRKREFENVHSFDLVAVNKRVIPCDMARVPLEDESVDVAVFCLSLM-GTNIADFLKEA 144
Query: 143 YRVLKPGG 150
R+LK GG
Sbjct: 145 NRILKNGG 152
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 26.7 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 130 RNVTRIDKALSEAYRVLKPGGRFL 153
R++ ++ AL A VLKP G F+
Sbjct: 120 RSIDLVELALDIAKEVLKPKGNFV 143
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 26.3 bits (58), Expect = 6.0
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 96 IDI-PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+D P L F +A + + + Y T + ++ L + +LKPGG L
Sbjct: 50 VDPSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLI 109
Query: 155 LEF 157
Sbjct: 110 STP 112
>gnl|CDD|225732 COG3191, DmpA, L-aminopeptidase/D-esterase [Amino acid transport
and metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 348
Score = 27.0 bits (60), Expect = 6.1
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 90 AFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 147
A G + P + E A LP G+ + +AL E R +
Sbjct: 58 APGTNGTGLLTPLNQVEEVGAIVLPG--------GSTNGLAAADGVMRALEERERGFE 107
>gnl|CDD|143641 cd07881, RHD-n_NFAT, N-terminal sub-domain of the Rel homology
domain (RHD) of nuclear factor of activated T-cells
(NFAT) proteins. Proteins containing the Rel homology
domain (RHD) are metazoan transcription factors. The RHD
is composed of two structural sub-domains; this model
characterizes the N-terminal RHD sub-domain of the NFAT
family of transcription factors. NFAT transcription
complexes are a target of calcineurin, a calcium
dependent phosphatase, and activate genes that are
mainly involved in cell-cell interaction. Upon
de-phosphorylation of the nuclear localization signal,
NFAT enters the nucleus and acts as a transcription
factor; its export from the nucleus is triggered by
phosphorylation via export kinases. NFATs play important
roles in mediating the immune response, and are found in
T cells, B Cells, NK cells, mast cells, and monocytes.
NFATs are also found in various non-hematopoietic cell
types, where they play roles in development.
Length = 175
Score = 26.3 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 48 DVGEQ--RARDLFKVPVPNPRLRFLEANAEELPIE 80
D+G + R R +F+V +P P R L PIE
Sbjct: 137 DIGRKNTRVRLVFRVHIPQPSGRVLSLQVASNPIE 171
>gnl|CDD|185311 PRK15413, PRK15413, glutathione ABC transporter substrate-binding
protein GsiB; Provisional.
Length = 512
Score = 26.8 bits (59), Expect = 6.9
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 39 VADINR--AMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNI 96
VAD N AML GE + F P+P + LE N + S S I+ +
Sbjct: 223 VADNNTRAAMLQTGEAQ----FAFPIPYEQAALLEKNKNLELVASPSIMQRYISMNVTQK 278
Query: 97 DIPNPRLR 104
NP++R
Sbjct: 279 PFDNPKVR 286
>gnl|CDD|239547 cd03464, 3,4-PCD_beta, Protocatechuate 3,4-dioxygenase (3,4-PCD)
, beta subunit. 3,4-PCD catalyzes the oxidative ring
cleavage of 3,4-dihydroxybenzoate to produce
beta-carboxy-cis,cis-muconate. 3,4-PCDs are large
aggregates of 12 protomers, each composed of an alpha-
and beta-subunit and an Fe3+ ion bound in the
beta-subunit at the alpha-subunit-beta-subunit
interface. 3,4-PCD is a member of the aromatic
dioxygenases which are non-heme iron intradiol-cleaving
enzymes that break the C1-C2 bond and utilize Fe3+.
Length = 220
Score = 26.5 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 26 PNTLSEHCAPHVTVADINRAMLD---------VGEQ-----RARDLFKVPVPNPRLRFLE 71
P+TLSE P D+ D +GE+ R D PVPN + +
Sbjct: 30 PHTLSELTGPVFGHDDLGPLDNDLTRNHNGEPIGERIIVHGRVLDEDGRPVPNTLVEIWQ 89
Query: 72 ANA 74
ANA
Sbjct: 90 ANA 92
>gnl|CDD|216706 pfam01795, Methyltransf_5, MraW methylase family. Members of this
family are probably SAM dependent methyltransferases
based on Escherichia coli rsmH. This family appears to
be related to pfam01596.
Length = 310
Score = 26.5 bits (59), Expect = 7.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 133 TRIDKALSEAYRVLKPGGRFLCLEF 157
+ +AL +A +L PGGR + F
Sbjct: 218 ESLKEALEQAPDLLAPGGRLSVISF 242
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 40 ADINRAMLDVGEQRARDLFKVPVPNP 65
+DI +A+ +Q A DL K+PV
Sbjct: 224 SDIRKAIRIARKQAAPDLLKLPVSAA 249
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 26.3 bits (58), Expect = 8.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 136 DKALSEAYRVLKPGGRFLCLE 156
K + ++ LKPGG +L +
Sbjct: 146 AKVNAAVFKALKPGGVYLVED 166
>gnl|CDD|131475 TIGR02422, protocat_beta, protocatechuate 3,4-dioxygenase, beta
subunit. This model represents the beta chain of
protocatechuate 3,4-dioxygenase. The most closely
related family outside this family is that of the alpha
chain (TIGR02423), typically encoded in an adjacent
locus. This enzyme acts in the degradation of aromatic
compounds by way of p-hydroxybenzoate to succinate and
acetyl-CoA [Energy metabolism, Other].
Length = 220
Score = 26.2 bits (58), Expect = 8.0
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 26 PNTLSEHCAPHVTVADI---------NRAMLDVGEQ-----RARDLFKVPVPNPRLRFLE 71
P +LSE P D+ +GE+ R D PVPN + +
Sbjct: 25 PQSLSELTGPVFGHDDLGPIDNDLTLAHGGEPIGERIIVHGRVLDEDGRPVPNTLVEVWQ 84
Query: 72 ANA 74
ANA
Sbjct: 85 ANA 87
>gnl|CDD|218090 pfam04450, BSP, Peptidase of plants and bacteria. These basic
secretory proteins (BSPs) are believed to be part of the
plants defence mechanism against pathogens.
Length = 203
Score = 26.1 bits (58), Expect = 8.2
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 16 RFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG 50
RFL+Y++ P V +N ML G
Sbjct: 158 RFLDYLEDRSPGF----------VRKLNDKMLRDG 182
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 26.0 bits (58), Expect = 8.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLC 154
++ + AL A VL+PGG F+
Sbjct: 108 ISLQLVLAALLLALEVLRPGGNFVV 132
>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein. This family is
found exclusively in the Archaea [Hypothetical proteins,
Conserved].
Length = 329
Score = 26.2 bits (58), Expect = 9.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 108 ANAEELPIESDS---------YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
+A +LP+ S+S Y T A G + +++L E + VLK G
Sbjct: 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWI 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,948,713
Number of extensions: 850275
Number of successful extensions: 857
Number of sequences better than 10.0: 1
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 76
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)