RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy889
(167 letters)
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 124 bits (312), Expect = 4e-36
Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 46/158 (29%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G I+ + VT DIN + + E AR + F
Sbjct: 41 SGKISLELASKG-------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
NA L S+ + + ++ P+P+ R
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSV--PDPKER------------------------- 120
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ + E +RVLKPG +EF + L
Sbjct: 121 ------SRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYR 152
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 114 bits (288), Expect = 3e-32
Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 54/158 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G +A F +V V D+ +L V
Sbjct: 48 GGHVANAFAPFVK-------------KVVAFDLTEDILKVARAFIEGN------------ 82
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G + ++ +++ +AE++P + + T
Sbjct: 83 ----------------------GHQQVE-------YVQGDAEQMPFTDERFHIVTCRIAA 113
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ +SEAYRVLK GG+ L ++ S N
Sbjct: 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 151
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 103 bits (258), Expect = 5e-28
Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 54/158 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G A F YV D + M++V A++
Sbjct: 32 AGHTALAFSPYV-------------QECIGVDATKEMVEVASSFAQEK------------ 66
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G+ N+ F + AE LP DS+ T +
Sbjct: 67 ----------------------GVENVR-------FQQGTAESLPFPDDSFDIITCRYAA 97
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ + + KA+ E RVLK GRFL ++ + +L
Sbjct: 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 135
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 98.2 bits (245), Expect = 3e-26
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 51/156 (32%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G V + V D+ M++ ++ L
Sbjct: 48 AGFYLPYLSKMVGE----------KGKVYAIDVQEEMVNYAWEKVNKL------------ 85
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
G++N++ L++ ++P+ ++ +AF
Sbjct: 86 ----------------------GLKNVE-------VLKSEENKIPLPDNTVDFIFMAFTF 116
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 165
++ K L E RV KP +++
Sbjct: 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 85.2 bits (211), Expect = 3e-21
Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 52/150 (34%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
PG ++ L++ + D ++ M ++ + D
Sbjct: 54 PGALSIA------------LAKQSDFSIRALDFSKHMNEIALKNIADA------------ 89
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
+ + R++ ++ + +PIE + +
Sbjct: 90 ----------------------NLND------RIQIVQGDVHNIPIEDNYADLIVSRGSV 121
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ A E YR+LK GG+
Sbjct: 122 FFWEDVATAFREIYRILKSGGKTYIGGGFG 151
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 83.3 bits (206), Expect = 1e-20
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 46/124 (37%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ + AML VG +RA
Sbjct: 58 QKVGVEPSEAMLAVGRRRA----------------------------------------- 76
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
P ++ A E LP +S+ + + V +++ L EA RVL+PGG +
Sbjct: 77 -----PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG 131
Query: 156 EFSH 159
Sbjct: 132 VLEA 135
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 78.0 bits (192), Expect = 3e-18
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 46/123 (37%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V + D ++ ML+V ++ +EA AE+LP S ++ A +A G
Sbjct: 78 EVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFEA-VLALG--- 122
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ V DKA SE RVL P G +
Sbjct: 123 -------------------------------DVLSYVENKDKAFSEIRRVLVPDGLLIAT 151
Query: 156 EFS 158
+
Sbjct: 152 VDN 154
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 77.6 bits (191), Expect = 5e-18
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 41/124 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+T DI+ L+ + GI+N
Sbjct: 63 EITSIDISPESLEKARENTEKN----------------------------------GIKN 88
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ +FL+AN LP E S+ + F + ++ ++AL +VLKPGG +
Sbjct: 89 V-------KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
Query: 156 EFSH 159
E H
Sbjct: 142 EGDH 145
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 72.1 bits (177), Expect = 3e-16
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 46/134 (34%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
T+ D++ ML++ + R R
Sbjct: 70 TFTLVDMSEKMLEIAKNRFRG--------------------------------------- 90
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA--LSEAYRVLKPGGRFL 153
N +++++EA+ + E + Y A I ++ DK +Y +LK G F+
Sbjct: 91 ----NLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI 145
Query: 154 CLEFSHVNNSMLQW 167
+ H + ++
Sbjct: 146 NADLVHGETAFIEN 159
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 70.2 bits (172), Expect = 1e-15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 103 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ L+ AE LP++ +S+ + I V ++AL EAYR+LK GG +
Sbjct: 86 VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 67.4 bits (165), Expect = 6e-15
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
+ + ++ I +S A ++ +SE R+LK GR + +++ N
Sbjct: 58 KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117
Query: 162 NSM 164
+
Sbjct: 118 TGI 120
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 68.4 bits (167), Expect = 1e-14
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 42/124 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
D + AML+V Q+ +
Sbjct: 63 RYIALDADAAMLEVFRQKIAGV-------------------------------------- 84
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ +++ ++A+A +P+ +S + V K L+EA RVLKPGG L
Sbjct: 85 ----DRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140
Query: 156 EFSH 159
Sbjct: 141 WDQA 144
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 68.0 bits (166), Expect = 1e-14
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
P L F++ + LP E++ + A + +AL+E RVLK G
Sbjct: 97 GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP 156
Query: 160 VNNSMLQW 167
Sbjct: 157 TAKPRENS 164
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 61.1 bits (148), Expect = 4e-12
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 85 SAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEA 142
S I + F+ +A +L E ++ I + ++ + E
Sbjct: 69 SEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEV 128
Query: 143 YRVLKPGGRFLCLEFSH 159
RVLKP G+F+
Sbjct: 129 RRVLKPSGKFIMYFTDL 145
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 61.1 bits (148), Expect = 4e-12
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+P++ + AE L + S I + + ++K+ E R+++ G L
Sbjct: 75 HPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 61.6 bits (149), Expect = 6e-12
Identities = 20/125 (16%), Positives = 30/125 (24%), Gaps = 33/125 (26%)
Query: 36 HVTVADINRAMLDVGEQRAR---DLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG 92
V D+ L+V + + F +RFL+ E L
Sbjct: 110 KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLA-------------- 155
Query: 93 IRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
AE + S T E +RVL+ GG
Sbjct: 156 ----------------TAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGEL 199
Query: 153 LCLEF 157
+
Sbjct: 200 YFSDV 204
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 60.0 bits (145), Expect = 1e-11
Identities = 17/136 (12%), Positives = 31/136 (22%), Gaps = 39/136 (28%)
Query: 36 HVTVADIN----RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
HVT DI A L +G+ L + F +++L
Sbjct: 70 HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL-------------- 115
Query: 92 GIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 151
PI + +A + + +
Sbjct: 116 ---------------------GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDH 154
Query: 152 FLCLEFSHVNNSMLQW 167
E+S ++ Q
Sbjct: 155 VDVAEWSMQPTALDQI 170
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 56.9 bits (137), Expect = 2e-10
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 45/136 (33%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L T D +L + R L
Sbjct: 40 LMPLLPEGSKYTGIDSGETLLAEARELFRLL----------------------------- 70
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
FLE +A E+ + D Y + ++T + L + +
Sbjct: 71 -------------PYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSV 116
Query: 147 KPGGRFLCLEFSHVNN 162
K GG+ +C E ++N
Sbjct: 117 KKGGKIICFEPHWISN 132
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 54.5 bits (131), Expect = 8e-10
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFSH 159
E + + S + ++T +K A+++ ++L GG+ + +
Sbjct: 90 EFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148
Query: 160 VNNSML 165
+
Sbjct: 149 ADQDAY 154
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 53.9 bits (129), Expect = 2e-09
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 93 IRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 152
+ D+ + R + ++P+E +S + T I L EA RVLKPGG
Sbjct: 89 VHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLL 147
Query: 153 LCLEF 157
E
Sbjct: 148 KVAEV 152
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 53.4 bits (128), Expect = 2e-09
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDS----YSAYTIAFGIRNVTRIDKAL 139
S + N +L + + +LP + +S YS TI +N + +A+
Sbjct: 54 ISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN--DVKEAI 111
Query: 140 SEAYRVLKPGGRFLCLEFSH 159
E RVLKPGG +
Sbjct: 112 DEIKRVLKPGGLACINFLTT 131
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 53.0 bits (127), Expect = 4e-09
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 41/130 (31%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ H VT D +D+ + AR + + N R+ + + ++LP ++
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNAR---QSGLQN-RVTGIVGSMDDLPFRNEELDLIW 119
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
I NI + L+E + LK
Sbjct: 120 SEGAIYNIGFE-------------------------------------RGLNEWRKYLKK 142
Query: 149 GGRFLCLEFS 158
GG E S
Sbjct: 143 GGYLAVSECS 152
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 50.6 bits (121), Expect = 2e-08
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 101 PRLRFLEANAEELPIESDSY----SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
P R++ + I + SA G + AL+ +R L GR + +
Sbjct: 89 PEARWVVGDLSVDQISETDFDLIVSAGN-VMGFLAEDGREPALANIHRALGADGRAV-IG 146
Query: 157 FSH 159
F
Sbjct: 147 FGA 149
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 50.6 bits (121), Expect = 3e-08
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 99 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
P+ + + A+ ++L + DS+ + + V + + ++ L PGG F+
Sbjct: 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVF 142
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 49.8 bits (119), Expect = 4e-08
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLC 154
P + F +L ++ + + ++ + AL ++ GG L
Sbjct: 84 PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 49.5 bits (118), Expect = 6e-08
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 99 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+P + + + E++ IE D+Y+ + + + D + Y LK G F+
Sbjct: 88 TSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIF 143
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 48.7 bits (116), Expect = 1e-07
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 41/131 (31%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+++ +T D+ +++ + A K + R++ + + + LP +++
Sbjct: 64 LADYVKGQITGIDLFPDFIEIFNENAV---KANCAD-RVKGITGSMDNLPFQNEELDLIW 119
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
I NI + ++E + LK
Sbjct: 120 SEGAIYNIGFE-------------------------------------RGMNEWSKYLKK 142
Query: 149 GGRFLCLEFSH 159
GG E S
Sbjct: 143 GGFIAVSEASW 153
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 47.8 bits (114), Expect = 3e-07
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 160
P L F A+A ++ A + V + A++ ++ LK GGRF+
Sbjct: 100 PHLHFDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158
Query: 161 NNSML 165
N +
Sbjct: 159 NIKYI 163
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 47.5 bits (113), Expect = 3e-07
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
R+ F A+A +LP E S+ A + ++ +AL E RVL+PGG +F
Sbjct: 112 RVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 47.0 bits (111), Expect = 6e-07
Identities = 15/150 (10%), Positives = 37/150 (24%), Gaps = 37/150 (24%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G+I + L+ V P + V + + + ++ + N + +
Sbjct: 63 AGEIDLQILSKVQAQYPGVCI-----NNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAW 115
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 129
+ + E + E + + +
Sbjct: 116 HKETSSEYQ------------------------------SRMLEKKELQKWDFIHMIQML 145
Query: 130 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
V I L + +L + L + S
Sbjct: 146 YYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 46.6 bits (110), Expect = 6e-07
Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 43/139 (30%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L V + DI L + +
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGE-------------------------------- 124
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVL 146
G R + + ++ E DSY I + I ++T + L L
Sbjct: 125 --EGKRVRN-------YFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSL 175
Query: 147 KPGGRFLCLEFSHVNNSML 165
+P G + + +L
Sbjct: 176 RPNGIIVIKDNMAQEGVIL 194
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 46.7 bits (111), Expect = 6e-07
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 100 NPRLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
N ++ F + +++ Y+ A ++ +K + Y+ LKP G L ++
Sbjct: 101 NNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160
Query: 158 SHVN 161
Sbjct: 161 CATE 164
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 44.9 bits (106), Expect = 2e-06
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 143
S+ +A + ++ +++N + I +D++ F + + + Y
Sbjct: 59 QSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY 118
Query: 144 RVLKPGGRFLCLEFS 158
+ LKPGG F+ F+
Sbjct: 119 QGLKPGGVFILEGFA 133
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 44.7 bits (105), Expect = 4e-06
Identities = 12/134 (8%), Positives = 33/134 (24%), Gaps = 36/134 (26%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
+++ P + +D++ M+ E P + F +++++
Sbjct: 54 MAQELKPFEQIIGSDLSATMIKTAEVIKEG---SPDTYKNVSFKISSSDDFKFLGAD--- 107
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
++ T + +K AY L
Sbjct: 108 ---------------------------SVDKQKIDMITAVECA-HWFDFEKFQRSAYANL 139
Query: 147 KPGGRFLCLEFSHV 160
+ G ++
Sbjct: 140 RKDGTIAIWGYADP 153
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 43.7 bits (103), Expect = 5e-06
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 158
+ F + + + + + A A + +V + + PGG ++ +
Sbjct: 90 DNVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148
Query: 159 H 159
Sbjct: 149 D 149
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 43.9 bits (103), Expect = 6e-06
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 41/129 (31%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L + + + ML+ ++ + P +F+ A+ E + ++Y
Sbjct: 111 LLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATLPPNTYDLIV 163
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
I + + + K + L P
Sbjct: 164 IQWTAIYL--TDADFV--------------------------------KFFKHCQQALTP 189
Query: 149 GGRFLCLEF 157
G E
Sbjct: 190 NGYIFFKEN 198
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 43.5 bits (102), Expect = 6e-06
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 28/131 (21%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L P+VT D + ++ + P+LR+ + +L S S+
Sbjct: 60 LFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDV-V 111
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
+ G L L A + V +D+ LSE RVL P
Sbjct: 112 LEKGT---------LDALLAGERD-----------PWTVSSEGVHTVDQVLSEVSRVLVP 151
Query: 149 GGRFLCLEFSH 159
GGRF+ + +
Sbjct: 152 GGRFISMTSAA 162
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 43.7 bits (103), Expect = 7e-06
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 40/118 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V D++ ML V ++A++ N ++ FL+ + E+ + + + A T+ F
Sbjct: 65 EVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFK-NEFDAVTMFFS--- 114
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
+ + K S+ LKPGG F+
Sbjct: 115 ------------------------------TIMYFDEEDLRKLFSKVAEALKPGGVFI 142
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 43.6 bits (103), Expect = 7e-06
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 39/118 (33%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D++ ML++ +++A + N + F + EL + + A TI N
Sbjct: 56 EVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELP-EPVDAITILCDSLN 108
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
+L+ A+ + + A R+L GG+ L
Sbjct: 109 ---------YLQTEAD-----------------------VKQTFDSAARLLTDGGKLL 134
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 43.3 bits (102), Expect = 1e-05
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 102 RLRFLEANAEELPIESDSY-SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ + E+P E +SY ++ + + K E RVLKP G +
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFL-HSPDKLKVFQECARVLKPRGVMAITDPMK 190
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 42.2 bits (99), Expect = 1e-05
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 30/123 (24%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V DI + ++ DL + R+ ++ + + D + F +
Sbjct: 49 RVFGFDIQDKAIANTTKKLTDLNLID----RVTLIKDGHQNMDKYIDCPVK-AVMFNLGY 103
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
+ + +ALS+A +L GG +
Sbjct: 104 LPSGDHS-------------------------ISTRPETTIQALSKAMELLVTGGIITVV 138
Query: 156 EFS 158
+
Sbjct: 139 IYY 141
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 42.1 bits (98), Expect = 2e-05
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 15/118 (12%)
Query: 43 NRAMLDVGEQRARDLFKVPVPNPRLRF--LEANAEELPIESDSYSAYTIAFGIRNIDIPN 100
+R +D+G R+++K+ + + + ++ E L S G+ N
Sbjct: 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN----- 79
Query: 101 PRLRFLEANAEELPIE-SDSYSAYTIAF---GIRNVTRIDKA--LSEAYRVLKPGGRF 152
+ F+ A AE LP E + + +I F + LS + K F
Sbjct: 80 --VVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHF 135
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 40.6 bits (95), Expect = 9e-05
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 102 RLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+R N + P + + +++ + + + SE R LK GGR++ +
Sbjct: 168 HVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCW 224
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 40.4 bits (94), Expect = 1e-04
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 38/123 (30%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ D + LD + A ++ +A +L + Y T
Sbjct: 145 QLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTR-EGYDLLTSNGLN-- 197
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
I P+ R+ + ++ LKPGG +
Sbjct: 198 IYEPDDA-------------------------------RVTELYRRFWQALKPGGALVTS 226
Query: 156 EFS 158
+
Sbjct: 227 FLT 229
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 39.9 bits (93), Expect = 2e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
P++ F A++ LP S A + E RV+KPGG +
Sbjct: 129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVI 175
Score = 31.4 bits (71), Expect = 0.098
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 34 APHVTVA--DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
P +T D+++ + + A P++ F A++ LP S A +
Sbjct: 107 LPEITTFGLDVSKVAI----KAAAKR------YPQVTFCVASSHRLPFSDTSMDAIIRIY 156
Query: 92 GIRNID 97
+
Sbjct: 157 APCKAE 162
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 38.5 bits (89), Expect = 4e-04
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 8/58 (13%)
Query: 101 PRLRFLEANA-EELPIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
P E N ELP + + G + + + P FL +
Sbjct: 91 PHADVYEWNGKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHFLYVG 142
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens}
PDB: 2yui_A
Length = 176
Score = 37.9 bits (87), Expect = 5e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 109 NAEELPIESDSYSAY----TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 163
N ++L + S++ + + L+E R+L+PGG E
Sbjct: 50 NIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD 108
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.0 bits (88), Expect = 6e-04
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 36/118 (30%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT +++ ++L +R + R ++ + ++ + I+ G
Sbjct: 106 EVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQGDMSAFALD-KRFGTVVISSG--- 159
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
+ + + L+PGG+FL
Sbjct: 160 ------------------------------SINELDEADRRGLYASVREHLEPGGKFL 187
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 37.9 bits (88), Expect = 6e-04
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 153
NP + + + +SA T F + +D AL + P G +
Sbjct: 92 NPDAVLHHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 7e-04
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 54/181 (29%)
Query: 10 PGDIAFRFLNYV-DKLPPNTLSEHCA------------------PHVTVADI---NRAML 47
P ++ +FL YV + P+ + + H A + N L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 48 DVGEQ------RARDLFKVPVPNPRL-RFLEANAEELPIESDSYSAYTIAFG-------- 92
++ AR + K P A + + I FG
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRA------VGEGNAQLVAI-FGGQGNTDDY 169
Query: 93 ---IRNI-DIPNPRLR-FLEANAEEL----PIESDSYSAYTIAFGIRN-VTRIDKALSEA 142
+R++ + + ++ +AE L D+ +T I + +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 143 Y 143
Y
Sbjct: 230 Y 230
Score = 26.6 bits (58), Expect = 5.9
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 25/92 (27%)
Query: 54 ARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNP-RLRFLEANAEE 112
A+D++ A D++ T F I +I I NP L +
Sbjct: 1642 AQDVWN-----------RA---------DNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 113 LPIESDSYSAY---TIAFGIRNVTRIDKALSE 141
I ++YSA TI G +I K ++E
Sbjct: 1682 KRIR-ENYSAMIFETIVDGKLKTEKIFKEINE 1712
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 37.4 bits (87), Expect = 0.001
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Query: 84 YSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKAL 139
S ++ + R + L I + T I + + K
Sbjct: 67 LSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYF 125
Query: 140 SEAYRVLKPGGRFLC 154
LK GG F+
Sbjct: 126 KAVSNHLKEGGVFIF 140
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.0 bits (86), Expect = 0.001
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 153
P + + + + +SA F ++ + A++ L+PGG +
Sbjct: 82 LPDATLHQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 35.9 bits (83), Expect = 0.003
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 99 PNPRLRFLEANAEELPIESDSY----SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ + ++P+ Y + + + I + LS +L PGG +
Sbjct: 97 EVHLASYAQLAEAKVPVG-KDYDLICANFALLH-----QDIIELLSAMRTLLVPGGALVI 150
Query: 155 LEFSH 159
+ H
Sbjct: 151 -QTLH 154
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 35.8 bits (82), Expect = 0.004
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 26/118 (22%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + ML + + + + EAN L + + + + N
Sbjct: 81 SVTSVDASDKMLKYALKERWNR-RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 139
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
S + + + AL +++PGG +
Sbjct: 140 -------------------------SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.005
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 39/134 (29%)
Query: 16 RFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75
RF D L T + H+++ + + + L L++L+ +
Sbjct: 273 RFKQVTDFLSAATTT-----HISLDHHSMTL---TPDEVKSLL--------LKYLDCRPQ 316
Query: 76 ELPIESDSYSAYTIAFGIRNIDIPNPR-LRFLEANAEELPIESDSYSAYTIAFGIRNVTR 134
+LP E T NPR L + + + D++ N +
Sbjct: 317 DLPRE-----VLTT----------NPRRLSIIAESIRDGLATWDNWKHV-------NCDK 354
Query: 135 IDKALSEAYRVLKP 148
+ + + VL+P
Sbjct: 355 LTTIIESSLNVLEP 368
Score = 33.3 bits (75), Expect = 0.032
Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 48/167 (28%)
Query: 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLS-------EHCAPHVTVADINRAMLDVGEQR 53
M+ VFP +P LS + V ++++ +
Sbjct: 374 MFDRLS-VFPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----K 419
Query: 54 ARDLFKVPVPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNIDIPNPRLRFLEANA 110
+ +P+ L E + D Y+ + D +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI------PKTFD-----------SD 462
Query: 111 EELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 157
+ +P D Y I ++N+ ++ +R++ FL F
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMV-----FLDFRF 502
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 33.3 bits (76), Expect = 0.019
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 100 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLC 154
+L D+Y A + +V R + L +R LKPGG F
Sbjct: 84 RLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 32.9 bits (75), Expect = 0.034
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 45/139 (32%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ HC +TV D+ + QR + + + + + ++ +
Sbjct: 69 LAPHCK-RLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQFS-TAELFDLIV 119
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
+A + L ++T++ A+ ++L P
Sbjct: 120 VAEVL-----------------YYLE----------------DMTQMRTAIDNMVKMLAP 146
Query: 149 GGRFLCLEFSHVNNSMLQW 167
GG + F ++ +
Sbjct: 147 GGHLV---FGSARDATCRR 162
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 32.3 bits (73), Expect = 0.046
Identities = 3/28 (10%), Positives = 5/28 (17%)
Query: 138 ALSEAYRVLKPGGRFLCLEFSHVNNSML 165
+L G +E
Sbjct: 145 LGQSLRILLGKQGAMYLIELGTGCIDFF 172
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 32.1 bits (73), Expect = 0.050
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 101 PRLRFLEANAEELPIESDSYSAY--TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 158
L + L + Y T+ I ++ R KPGG L +
Sbjct: 80 DNLHTRVVDLNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138
Query: 159 H 159
Sbjct: 139 D 139
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.9 bits (70), Expect = 0.15
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ + ++P E + + + ++ + + +K G L
Sbjct: 75 DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 30.7 bits (69), Expect = 0.19
Identities = 9/56 (16%), Positives = 20/56 (35%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY 84
L + +T D++ L++ ++R L RL+ ++ Y
Sbjct: 48 LKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGY 103
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 30.4 bits (69), Expect = 0.22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 139 LSEAYRVLKPGGRF 152
E +R+L PGGR
Sbjct: 80 WREVFRLLVPGGRL 93
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 30.4 bits (69), Expect = 0.23
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 22/90 (24%)
Query: 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI 125
R+ FLE +E L + N + R AE D +Y I
Sbjct: 106 RITFLEKLSEAL--------------QLENTTFCHDR-------AETFGQRKDVRESYDI 144
Query: 126 AFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
R V R+ ++K G F+ L
Sbjct: 145 VT-ARAVARLSVLSELCLPLVKKNGLFVAL 173
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 30.1 bits (68), Expect = 0.24
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 22/90 (24%)
Query: 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI 125
++ F+E E L G++ R AE L E+ AY
Sbjct: 116 KVAFVERAIEVL--------------GLKGARALWGR-------AEVLAREAGHREAYAR 154
Query: 126 AFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
A R V + L+ GG + +
Sbjct: 155 AVA-RAVAPLCVLSELLLPFLEVGGAAVAM 183
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 30.1 bits (68), Expect = 0.24
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFG-IRNVTRIDKALSEAYRVLKPGGRFL 153
R+ F+ +A ++ G A + LKPGG L
Sbjct: 87 RVHFIHNDAAGYV-ANEKCDV-AACVGATWIAGGFAGAEELLAQSLKPGGIML 137
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 0.25
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 65 PRLRFLEANAEELPIESD--------SYSAY-TIAFGIRNIDIPNPRLRFLEANAEEL 113
P +R + + EL +Y + IA + +I ++ N + +
Sbjct: 143 PLIRIV--SGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGV 198
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, D binding, DNA modification, DNA
methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides}
SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Length = 319
Score = 29.4 bits (66), Expect = 0.45
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 139 LSEAYRVLKPGGRF 152
L+EA RVL P G
Sbjct: 89 LAEAERVLSPTGSI 102
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive
motor neuropathy, structural genomics; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 97
Score = 28.4 bits (63), Expect = 0.53
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 57 LFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNIDI 98
L KVPV L + + IE ++ + F + N D
Sbjct: 45 LLKVPVSELLLSYESSKMPGREIELEN-DLQPLQFYSVENGDC 86
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 29.1 bits (66), Expect = 0.60
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 105 FLEANAEELP---IESDSYSAYTIAFGIRNVTRIDK------ALSEAYRVLKPG 149
++ + + + Y I R+D AL E YR+++PG
Sbjct: 178 LSQSGHKRIETLFTNDLDHGPY-----ISETLRVDPTNDRLSALVEIYRMMRPG 226
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 29.0 bits (65), Expect = 0.72
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 139 LSEAYRVLKPGGRFLC 154
+ LKP G F+
Sbjct: 67 AKVVNKKLKPDGSFVV 82
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.9 bits (65), Expect = 0.75
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 102 RLRFLEANA-EELPIESDSYSAYTIA-----FGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
R+ F E N + E + + F R + + A ++KPGG L L
Sbjct: 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREV---IGHAAGLVKPGGALLIL 286
Query: 156 EF 157
Sbjct: 287 TM 288
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 28.7 bits (64), Expect = 0.80
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 137 KALSEAYRVLKPGGRFLCL 155
+A+ + L+ GGR +
Sbjct: 116 EAIEKILDRLEVGGRLAIM 134
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 28.8 bits (64), Expect = 0.80
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 46/142 (32%)
Query: 14 AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN 73
A Y + P + TV +++ + + +R+ F +P PR++ +
Sbjct: 100 ACTMARYFADVYPQS-------RNTVVELDAELARL----SREWFDIP-RAPRVKIRVDD 147
Query: 74 AEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRN 131
A E+ I D ++
Sbjct: 148 A----------------------------RMVAESFTPASRDVIIRDVFAGAITPQNFTT 179
Query: 132 VTRIDKALSEAYRVLKPGGRFL 153
V +R L PGG ++
Sbjct: 180 VE----FFEHCHRGLAPGGLYV 197
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 28.6 bits (63), Expect = 0.96
Identities = 2/53 (3%), Positives = 12/53 (22%), Gaps = 5/53 (9%)
Query: 102 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ + + + + + + +R + R +
Sbjct: 173 GVNVITGDETVIDGLE-----FDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 28.0 bits (63), Expect = 1.2
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 39/121 (32%)
Query: 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI 93
T+ADINR + + ++ + + N +R + ++ E ++ Y+ I
Sbjct: 74 VKSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYE-NVKDRKYNK--I---- 123
Query: 94 RNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
I NP PI + G + RI + E +LK G
Sbjct: 124 ----ITNP------------PIRA----------GKEVLHRI---IEEGKELLKDNGEIW 154
Query: 154 C 154
Sbjct: 155 V 155
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 135 IDKALSEAYRVLKPGGR 151
I++AL + VL PGGR
Sbjct: 253 IEQALKSSLNVLAPGGR 269
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 27.8 bits (62), Expect = 1.6
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 101 PRLRFLEANAEELPIESDSYSAY--TIAFGIRNVTRID------KALSEAYRVLKPGGRF 152
+RFL A+A LP G+R + L A +L PGGR
Sbjct: 254 SWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV 313
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 27.7 bits (62), Expect = 1.6
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 139 LSEAYRVLKPGGRF 152
+ + L G
Sbjct: 57 IDKVLDKLDKDGSL 70
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 27.7 bits (61), Expect = 1.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 136 DKALSEAYRVLKPGGRFLCLEFS 158
Y +LKP G + L +
Sbjct: 151 PAWAKSMYELLKPDGELITLMYP 173
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 27.8 bits (63), Expect = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 135 IDKALSEAYRVLKPGGR 151
+ + L +A VL PGGR
Sbjct: 212 LKEFLEQAAEVLAPGGR 228
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 27.8 bits (61), Expect = 1.8
Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 35/126 (27%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
DI ++ RAR++ + ++ F ++ ++
Sbjct: 82 YERAGIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEFDVI 137
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 148
+ ++ + +D A R L+P
Sbjct: 138 SSQ-------------------------------FSFHYAFSTSESLDIAQRNIARHLRP 166
Query: 149 GGRFLC 154
GG F+
Sbjct: 167 GGYFIM 172
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 27.3 bits (60), Expect = 2.0
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 97 DIPNPRLRFLEANAEELPIESDSYSAY------TIAFGIRNVTRIDKALSEAYRVLKPGG 150
+PN L +L A AE LP S + ++ G+ + + L V +PG
Sbjct: 79 GLPN--LLYLWATAERLPPLSGVGELHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGA 134
Query: 151 RFL 153
FL
Sbjct: 135 SFL 137
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 27.5 bits (61), Expect = 2.1
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 12/120 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT+ + ++ M + +R+ +L + R+ LEA+ F +
Sbjct: 62 EVTLYERSQEMAEFA-RRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF---H 117
Query: 96 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
I NP + +A P + + + R A ++ GG+ +
Sbjct: 118 HVIMNPP--YNDAGDRRTPDALKAEAHAMTEGLFEDWIRT------ASAIMVSGGQLSLI 169
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger,
ATP-binding, RNA-binding, nonsense-M mRNA decay,
nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Length = 97
Score = 26.2 bits (57), Expect = 2.8
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 19/79 (24%)
Query: 40 ADINRA----MLDVGEQRARD-----LFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA 90
D +A ML+ +QR+ + V +P L E ++ SA T+
Sbjct: 10 EDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMP 69
Query: 91 FGI----------RNIDIP 99
F + + +++P
Sbjct: 70 FVMLTRKGNKQQFKILNVP 88
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 26.8 bits (59), Expect = 3.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 134 RIDKALSEAYRVLKPGGRFLC 154
R+ + LS Y +K +
Sbjct: 118 RLFELLSLCYSKMKYSSYIVI 138
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 27.1 bits (61), Expect = 3.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 135 IDKALSEAYRVLKPGGRF 152
+ + L +A +L PGGR
Sbjct: 224 LKEFLKKAEDLLNPGGRI 241
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 26.7 bits (58), Expect = 3.8
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 91 FGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 150
+G ++ + R FL E + AFG +D L E + +K GG
Sbjct: 227 YGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG----PEVDHQLKERFANMKEGG 282
Query: 151 RFLCLE 156
R + +
Sbjct: 283 RIVSSK 288
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 26.2 bits (58), Expect = 5.7
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 139 LSEAYRVLKPGGRFLCLEF 157
L + L G+ + +F
Sbjct: 254 LRKIKTALAVEGKVIVFDF 272
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 26.1 bits (58), Expect = 6.0
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 26/90 (28%)
Query: 66 RLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTI 125
R+RFL EL + NI+ R EE P E +
Sbjct: 101 RVRFLRQVQHEL--------------KLENIEPVQSR-------VEEFPSE-PPFDGVIS 138
Query: 126 AFGIRNVTRIDKALSEAYRVLKPGGRFLCL 155
R ++ +S + + GRF L
Sbjct: 139 ----RAFASLNDMVSWCHHLPGEQGRFYAL 164
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 25.8 bits (57), Expect = 8.2
Identities = 2/24 (8%), Positives = 8/24 (33%)
Query: 134 RIDKALSEAYRVLKPGGRFLCLEF 157
+ L+ + + + +E
Sbjct: 265 EVISILTRVAQSIGKDSKVYIMET 288
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 25.7 bits (55), Expect = 8.8
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 28/132 (21%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFK--VPVPNPRLRFLEANAEELPIESDSYSA 86
+ + DI + +QR D+ F+ A++ + + D +
Sbjct: 52 WKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI-DKFRD 110
Query: 87 YTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 146
+ F I + + + + D L A L
Sbjct: 111 PQMCFDI-------------------------CSCQFVCHYSFESYEQADMMLRNACERL 145
Query: 147 KPGGRFLCLEFS 158
PGG F+ +
Sbjct: 146 SPGGYFIGTTPN 157
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 25.7 bits (56), Expect = 9.2
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 6/45 (13%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80
VT D N + + N + + I+
Sbjct: 144 DVTSWDHNENSIAFLNETKEKE------NLNISTALYDINAANIQ 182
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 25.7 bits (56), Expect = 9.8
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 45 AMLDVGEQRARDLFKVPVPNPRLRFLEANA----EELPIESD--SYSAYTIAFGIRNIDI 98
AM+ R++ +L + +++P+ + + I ++N D+
Sbjct: 345 AMISGNFADVREMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKDL 404
Query: 99 PNP 101
+P
Sbjct: 405 KSP 407
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 25.6 bits (57), Expect = 9.9
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 142 AYRVLKPGGRFL 153
Y + GR L
Sbjct: 169 FYNLTPDDGRML 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,676,745
Number of extensions: 158908
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 160
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)