RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy889
(167 letters)
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 41.1 bits (95), Expect = 2e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
+ T + + + + KA+ E RVLK GRFL ++ + +L
Sbjct: 83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 40.2 bits (93), Expect = 4e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
D Y + ++T + L + +K GG+ +C E
Sbjct: 93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 39.1 bits (90), Expect = 1e-04
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 93 IRNIDIPNPRLRFLEANAEELPIESDSYSAYTI-AFGIRNVTRIDKALSEAYRVLKPGGR 151
++ + + + I +D L E + +K GGR
Sbjct: 202 MKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGR 261
Query: 152 FLCLE 156
+ +
Sbjct: 262 IVSSK 266
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 37.7 bits (86), Expect = 3e-04
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 109 NAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 161
+ E + + + V I L + +L + L + S +
Sbjct: 113 SRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 35.2 bits (80), Expect = 0.002
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 63 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSA 122
R+ E + + +Y + ++ + +++ + F+ + + S +
Sbjct: 122 SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTF 181
Query: 123 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+A + N L Y LK GG
Sbjct: 182 DAVALDMLNP---HVTLPVFYPHLKHGGVCAV 210
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 34.7 bits (79), Expect = 0.003
Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 99 PNPRLRFLEANAEELPIESDSYSAYTIAF--GIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
N L+ + + ++ + ++K + + + K G + + L+
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 34.2 bits (77), Expect = 0.004
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 123 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
T + +SEAYRVLK GG+ L ++ S N
Sbjct: 85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 129
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 34.0 bits (77), Expect = 0.004
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 119 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
S Y + R + + + L +A +L PGGR + + F + + +++
Sbjct: 104 GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKE 152
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 33.8 bits (76), Expect = 0.005
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 124 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
T+ I ++ R KPGG L +
Sbjct: 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 34.2 bits (77), Expect = 0.005
Identities = 21/154 (13%), Positives = 40/154 (25%), Gaps = 14/154 (9%)
Query: 5 FYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPN 64
+ ++ GD R Y L L +H V LDV D +
Sbjct: 29 VWQLYIGDTRSRTAEYKAWLL-GLLRQHGCHRV---------LDVACGTGVDSIMLVEEG 78
Query: 65 PRLRFLEANAEELPIESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYT 124
+ ++A+ + L I L+ +
Sbjct: 79 FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 138
Query: 125 ----IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ + + AL +++PGG +
Sbjct: 139 SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 32.7 bits (73), Expect = 0.014
Identities = 17/143 (11%), Positives = 37/143 (25%), Gaps = 11/143 (7%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
+ +T++D + E+ + P ++F +E +S
Sbjct: 69 AACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA------CELEGNSGRWEE 122
Query: 89 IAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI----DKALSEAYR 144
+R + + P + AL
Sbjct: 123 KEEKLRA-AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLAS 181
Query: 145 VLKPGGRFLCLEFSHVNNSMLQW 167
+LKPGG + + + M+
Sbjct: 182 LLKPGGHLVTTVTLRLPSYMVGK 204
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 31.9 bits (71), Expect = 0.024
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 6/76 (7%)
Query: 79 IESDSYSAYTIAFGIRNIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 138
+ + + + F+ + E Y + G+ V
Sbjct: 104 VSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE---- 159
Query: 139 LSEAYRVLKPGGRFLC 154
+ LK GGR +
Sbjct: 160 --TWFTQLKEGGRVIV 173
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389
{Thermotoga maritima [TaxId: 2336]}
Length = 246
Score = 32.0 bits (71), Expect = 0.024
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ + + V DKA SE RVL P G +
Sbjct: 104 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 31.6 bits (70), Expect = 0.036
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 118 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 153
D+ + + + + K S+ LKPGG F+
Sbjct: 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 31.1 bits (69), Expect = 0.051
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 112 ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ ++ A + LKPGG L E
Sbjct: 93 AGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW 140
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 30.9 bits (68), Expect = 0.054
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 113 LPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
L E ++ I + ++ + E RVLKP G+F+ + F+ + + +
Sbjct: 96 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI-MYFTDLRELLPRL 151
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 30.6 bits (68), Expect = 0.071
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 11/126 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA-FGIR 94
+T+ D + ++ + + + D +
Sbjct: 79 DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVL 138
Query: 95 NIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI----RNVTRIDKALSEAYRVLKPGG 150
ID+ P+ A AF + ++ +AL +L+PGG
Sbjct: 139 PIDVHQPQP------LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGG 192
Query: 151 RFLCLE 156
L +
Sbjct: 193 HLLLIG 198
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 29.3 bits (64), Expect = 0.20
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 114 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 159
+ Y Y ++ + + + + A+R+LKPGG +
Sbjct: 121 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS 166
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 27.6 bits (60), Expect = 0.72
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 109 NAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
++ LP S A + E RV+KPGG +
Sbjct: 137 SSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVIT 175
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 27.5 bits (60), Expect = 0.78
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 104 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
+ + + E Y A + V + LKPGGR +
Sbjct: 135 QLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLIL 179
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 27.3 bits (59), Expect = 0.80
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
I + + K LK GG F+
Sbjct: 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 27.3 bits (60), Expect = 0.90
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
R + ++ + + S + ++ + L R+L GG +
Sbjct: 150 DNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMV 198
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 26.9 bits (59), Expect = 1.2
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 123 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 154
I ++ + + ++KPG
Sbjct: 153 QMYDAVIADIPDPWNHVQKIASMMKPGSVATF 184
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 26.6 bits (58), Expect = 1.6
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 101 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 156
+ +E ++ S+ + + +V + + + LK GGRF +
Sbjct: 149 TKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC 204
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine
methyltransferase {Red algae (Galdieria sulphuraria)
[TaxId: 130081]}
Length = 282
Score = 26.3 bits (56), Expect = 1.8
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 162
Y + K E RVLKP G + +
Sbjct: 136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDG 178
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 25.6 bits (55), Expect = 2.8
Identities = 6/23 (26%), Positives = 6/23 (26%)
Query: 135 IDKALSEAYRVLKPGGRFLCLEF 157
L PGGR L
Sbjct: 197 HAALAPRYREALVPGGRALLTGI 219
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
{Haemophilus influenzae [TaxId: 727]}
Length = 225
Score = 24.7 bits (52), Expect = 6.4
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 127 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
L++ Y L P G + E ++ +
Sbjct: 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 158
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 24.3 bits (52), Expect = 7.2
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 120 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 167
S++ + + + + L +A VL PGGR + + F + + +++
Sbjct: 95 VSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKR 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0382 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,235
Number of extensions: 29545
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 30
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.6 bits)