BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8890
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MYP|A Chain A, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|B Chain B, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|3ZS0|A Chain A, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|B Chain B, Human Myeloperoxidase Inactivated By Tx2
Length = 108
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLT-----SPRISNKGGNLPLARVVS 114
KYR G+C N + PT GA N F R + + DG + +P + G + LAR VS
Sbjct: 8 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 67
Query: 115 STM---HPDENKHEHAATVMLVAWGQFMDHDFTLTATP 149
+ + D+ + ++M + WGQ +DHD T P
Sbjct: 68 NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEP 105
>pdb|3F9P|A Chain A, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|B Chain B, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS1|A Chain A, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|B Chain B, Human Myeloperoxidase Inactivated By Tx5
Length = 114
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLT-----SPRISNKGGNLPLARVVS 114
KYR G+C N + PT GA N F R + + DG + +P + G + LAR VS
Sbjct: 8 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 67
Query: 115 STM---HPDENKHEHAATVMLVAWGQFMDHDFTLTATP 149
+ + D+ + ++M + WGQ +DHD T P
Sbjct: 68 NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEP 105
>pdb|1CXP|A Chain A, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|B Chain B, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|A Chain A, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|B Chain B, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|A Chain A, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|B Chain B, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|A Chain A, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|B Chain B, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|A Chain A, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|B Chain B, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|A Chain A, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|B Chain B, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|E Chain E, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|F Chain F, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|I Chain I, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|J Chain J, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|M Chain M, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|N Chain N, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 104
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLT-----SPRISNKGGNLPLARVVS 114
KYR G+C N + PT GA N F R + + DG + +P + G + LAR VS
Sbjct: 6 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 65
Query: 115 STM---HPDENKHEHAATVMLVAWGQFMDHDFTLTATP 149
+ + D+ + ++M + WGQ +DHD T P
Sbjct: 66 NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEP 103
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM--HPDENK-HEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + + DE+ + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVEC-KPGKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V C + YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVEC-KPGKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V C + YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + +E + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 47 CPAYLSNVECKPGK-YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTM--HPDENK-HEHAATVMLVAWGQFMDHDFTLT 146
+ G +PLAR VS+ + + DE+ + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFA 114
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 61 YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RISNKGGNLPLARVVSS 115
YR G C N + P GA N R + + DGL P R + G +PLAR VS+
Sbjct: 9 YRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSN 68
Query: 116 TM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ +E + +++ + WGQ +DHD
Sbjct: 69 KIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 102
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 61 YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RISNKGGNLPLARVVSS 115
YR G C N + P GA N R + + DGL P R + G +PLAR VS+
Sbjct: 9 YRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSN 68
Query: 116 TM---HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ +E + +++ + WGQ +DHD
Sbjct: 69 KIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA 102
>pdb|2Q01|A Chain A, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
pdb|2Q01|B Chain B, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
pdb|2Q01|C Chain C, Crystal Structure Of Glucuronate Isomerase From
Caulobacter Crescentus
Length = 497
Score = 30.0 bits (66), Expect = 0.47, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 74 PTWGAVNTPFQRLIGPLFS-DGLTSPRISNKGGNLPLARVVSSTMHPDENKHEHAATVML 132
P+W A N PFQ L + D + ++G +L +V S PD + E
Sbjct: 46 PSWFATNAPFQDATDLLLAPDHYLFRMLYSQGVSLDALKVRSKAGVPDTDPRE------- 98
Query: 133 VAWGQFMDHDFTLTATP 149
AW F H + TP
Sbjct: 99 -AWRVFASHFYLFRGTP 114
>pdb|3CVA|X Chain X, Human Bcl-Xl Containing A Trp To Ala Mutation At Position
137
Length = 219
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ + RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNAGRI 140
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 10 SRRQGTKTLKAIYDLSYEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYRRYDGLCT 69
+R+G K K + +E++ KG+ I + K + R++ P+ + V+ K K + GL T
Sbjct: 112 EKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDF-GLVT 170
Query: 70 NLKH 73
+LK+
Sbjct: 171 SLKN 174
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 10 SRRQGTKTLKAIYDLSYEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYRRYDGLCT 69
+R+G K K + +E++ KG+ I + K + R++ P+ + V+ K K + GL T
Sbjct: 126 EKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDF-GLVT 184
Query: 70 NLKH 73
+LK+
Sbjct: 185 SLKN 188
>pdb|3IHE|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (F105a) At Ph 6.0
pdb|3IIG|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (F105a) At Ph 5.0
Length = 196
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAASDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|1G5J|A Chain A, Complex Of Bcl-Xl With Peptide From Bad
Length = 175
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 64 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 104
>pdb|1YSG|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With "sar By Nmr" Ligands
pdb|1YSI|A Chain A, Solution Structure Of The Anti-apoptotic Protein Bcl-xl In
Complex With An Acyl-sulfonamide-based Ligand
pdb|1YSN|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl
Complexed With An Acyl-Sulfonamide-Based Ligand
pdb|2O1Y|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With An Acyl-Sulfonamide-Based Ligand
pdb|2YXJ|A Chain A, Crystal Structure Of Bcl-Xl In Complex With Abt-737
pdb|2YXJ|B Chain B, Crystal Structure Of Bcl-Xl In Complex With Abt-737
pdb|3PL7|A Chain A, Crystal Structure Of Bcl-Xl In Complex With The Baxbh3
Domain
pdb|3PL7|B Chain B, Crystal Structure Of Bcl-Xl In Complex With The Baxbh3
Domain
pdb|3QKD|A Chain A, Crystal Structure Of Bcl-Xl In Complex With A Quinazoline
Sulfonamide Inhibitor
pdb|3QKD|B Chain B, Crystal Structure Of Bcl-Xl In Complex With A Quinazoline
Sulfonamide Inhibitor
pdb|2M03|A Chain A, Solution Structure Of Bcl-xl Determined With Selective
Isotope Labelling Of I,l,v Sidechains
Length = 181
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 64 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 104
>pdb|2M04|A Chain A, Solution Structure Of Bcl-xl In Complex With Puma Bh3
Peptide
Length = 180
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 63 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 103
>pdb|3SP7|A Chain A, Crystal Structure Of Bcl-Xl Bound To Bm903
Length = 172
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 63 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 103
>pdb|2LPC|A Chain A, Nmr Structure Of Bcl-Xl
pdb|2LP8|A Chain A, Solution Structure Of An Apoptosis Activating
Photoswitchable Bak Peptide Bound To Bcl-Xl
Length = 185
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 60 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 100
>pdb|3SPF|A Chain A, Crystal Structure Of Bcl-Xl Bound To Bm501
Length = 171
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 63 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 103
>pdb|4EHR|A Chain A, Crystal Structure Of Bcl-Xl Complex With
4-(5-Butyl-3-(Hydroxymethyl)-
1-Phenyl-1h-Pyrazol-4-Yl)-3-(3,4-Dihydro-2(1h)-
Isoquinolinylcarbonyl)-N-((2-
(Trimethylsilyl)ethyl)sulfonyl)benzamide
Length = 172
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 63 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 103
>pdb|1R2I|A Chain A, Human Bcl-Xl Containing A Phe To Leu Mutation At Position
146
Length = 218
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|1LXL|A Chain A, Nmr Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell
Death, Minimized Average Structure
pdb|1MAZ|A Chain A, X-Ray Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell
D
pdb|1BXL|A Chain A, Structure Of Bcl-XlBAK PEPTIDE COMPLEX, NMR, MINIMIZED
Average Structure
Length = 221
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 104 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 144
>pdb|3R85|A Chain A, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
pdb|3R85|B Chain B, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
pdb|3R85|C Chain C, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
pdb|3R85|D Chain D, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
Length = 156
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 24 LSYEEVEKGLPLIDTS--KTLIREICPAYLSNVECKPGKYRRYDGLCTNLKHPTWGAVNT 81
LSY+ +KG + K +RE + +YRR T+ H T G
Sbjct: 16 LSYKLSQKGYSWSQMAAVKQALREAGDEF-------ELRYRRAFSDLTSQLHITPGTAYQ 68
Query: 82 PFQRLIGPLFSDGLTSPRI 100
F++++ LF DG+ RI
Sbjct: 69 SFEQVVNELFRDGVNWGRI 87
>pdb|2PON|B Chain B, Solution Structure Of The Bcl-XlBECLIN-1 Complex
Length = 156
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 60 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 100
>pdb|1R2H|A Chain A, Human Bcl-Xl Containing An Ala To Leu Mutation At Position
142
Length = 218
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|4HNJ|A Chain A, Crystallographic Structure Of Bcl-xl Domain-swapped Dimer
In Complex With Puma Bh3 Peptide At 2.9a Resolution
pdb|4HNJ|B Chain B, Crystallographic Structure Of Bcl-xl Domain-swapped Dimer
In Complex With Puma Bh3 Peptide At 2.9a Resolution
Length = 212
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 103 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 143
>pdb|1R2D|A Chain A, Structure Of Human Bcl-Xl At 1.95 Angstroms
pdb|2B48|A Chain A, Bcl-Xl 3d Domain Swapped Dimer
Length = 218
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|2P1L|A Chain A, Structure Of The Bcl-Xl:beclin 1 Complex
pdb|2P1L|C Chain C, Structure Of The Bcl-Xl:beclin 1 Complex
pdb|2P1L|E Chain E, Structure Of The Bcl-Xl:beclin 1 Complex
pdb|2P1L|G Chain G, Structure Of The Bcl-Xl:beclin 1 Complex
Length = 153
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 44 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 84
>pdb|1R2E|A Chain A, Human Bcl-Xl Containing A Glu To Leu Mutation At Position
92
Length = 218
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|1R2G|A Chain A, Human Bcl-Xl Containing A Phe To Trp Mutation At Position
97
Length = 218
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|2O2M|A Chain A, Solution Structure Of The Anti-apoptotic Protein Bcl-xl In
Complex With An Acyl-sulfonamide-based Ligand
pdb|2O2N|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With An Acyl-Sulfonamide-Based Ligand
Length = 145
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 49 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 89
>pdb|2BZW|A Chain A, The Crystal Structure Of Bcl-Xl In Complex With
Full-Length Bad
Length = 211
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|3FDL|A Chain A, Bim Bh3 Peptide In Complex With Bcl-Xl
pdb|3FDM|A Chain A, AlphaBETA FOLDAMER IN COMPLEX WITH BCL-Xl
pdb|3FDM|B Chain B, AlphaBETA FOLDAMER IN COMPLEX WITH BCL-Xl
pdb|3FDM|C Chain C, AlphaBETA FOLDAMER IN COMPLEX WITH BCL-Xl
pdb|3INQ|A Chain A, Crystal Structure Of Bcl-Xl In Complex With W1191542
pdb|3INQ|B Chain B, Crystal Structure Of Bcl-Xl In Complex With W1191542
pdb|3IO8|A Chain A, Biml12f In Complex With Bcl-Xl
pdb|3IO8|C Chain C, Biml12f In Complex With Bcl-Xl
pdb|2YJ1|A Chain A, Puma Bh3 Foldamer In Complex With Bcl-Xl
pdb|2YJ1|C Chain C, Puma Bh3 Foldamer In Complex With Bcl-Xl
pdb|4A1U|A Chain A, Crystal Structure Of Alpha-Beta-Foldamer 2c In Complex
With Bcl-Xl
pdb|4A1W|A Chain A, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|4A1W|B Chain B, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|4A1W|C Chain C, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|4A1W|D Chain D, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|2YQ6|A Chain A, Structure Of Bcl-xl Bound To Bimsahb
pdb|2YQ7|A Chain A, Structure Of Bcl-xl Bound To Bimlock
Length = 158
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 6 GNVNSRRQGTKTLKAIYDLSYEEVEKGLPL--IDTSKTLIREICPAYLSNVECKPGKYRR 63
G + S Q + L + LSY+ +KG + K +RE + +YRR
Sbjct: 1 GPLGSMSQSNRELVVDF-LSYKLSQKGYSWSQMAAVKQALREAGDEF-------ELRYRR 52
Query: 64 YDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
T+ H T G F++++ LF DG+ RI
Sbjct: 53 AFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 89
>pdb|1PQ0|A Chain A, Crystal Structure Of Mouse Bcl-Xl
pdb|1PQ1|A Chain A, Crystal Structure Of Bcl-XlBIM
pdb|3IHC|A Chain A, Crystal Structure Of Mouse Bcl-Xl (Wt) At Ph 5.0
pdb|3IIH|A Chain A, Crystal Structure Of Mouse Bcl-Xl (Wt) At Ph 6.0
Length = 196
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|1AF3|A Chain A, Rat Bcl-Xl An Apoptosis Inhibitory Protein
Length = 196
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T G F++++ LF DG+ RI
Sbjct: 100 RYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRI 140
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 26 YEEVEKGLPLIDTSKTLIREICPA-YLSNVECKPGKYRRYD 65
Y V L + S+ L+R P Y+SNV +PG+ YD
Sbjct: 189 YTSVISNLCVKGISEALLRTSAPKLYVSNVXTQPGETDNYD 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,730,918
Number of Sequences: 62578
Number of extensions: 180994
Number of successful extensions: 342
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 43
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)