Query psy8890
Match_columns 150
No_of_seqs 162 out of 714
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:03:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_A Myeloperoxidase; heme-p 100.0 2.5E-41 8.7E-46 244.3 7.4 95 56-150 1-104 (104)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 4.6E-34 1.6E-38 257.0 8.1 104 46-149 5-117 (595)
3 3nt1_A Prostaglandin-endoperox 99.8 1.2E-19 3.9E-24 163.3 6.8 91 44-148 90-183 (587)
4 1q4g_A Prostaglandin G/H synth 99.7 1.1E-18 3.9E-23 155.8 5.7 83 58-147 96-182 (553)
5 1rpb_A Tricyclic peptide RP 71 37.9 10 0.00036 19.9 0.7 8 66-73 5-12 (26)
6 1b1v_A PSP1, protein (plasmato 33.5 14 0.00047 19.5 0.7 16 55-70 6-21 (26)
7 2eqq_A GBP, growth-blocking pe 29.4 15 0.00053 19.6 0.5 16 55-70 6-21 (28)
8 1sfu_A 34L protein; protein/Z- 8.0 2.2E+02 0.0075 18.5 2.1 20 14-33 31-50 (75)
9 4ham_A LMO2241 protein; struct 7.2 1.4E+02 0.0049 20.4 1.0 14 104-117 35-48 (134)
10 3ox7_P MH027; urokinase-type p 6.8 1.9E+02 0.0064 14.5 1.0 9 63-71 3-11 (23)
No 1
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=100.00 E-value=2.5e-41 Score=244.33 Aligned_cols=95 Identities=34% Similarity=0.681 Sum_probs=85.8
Q ss_pred CC-CCccccccccCcCCCCCCCCCCCCCcccccCCCCCCCCCCCc-----ccCCCCCCCchhhhhhhhcCCCC---CCCC
Q psy8890 56 CK-PGKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPR-----ISNKGGNLPLARVVSSTMHPDEN---KHEH 126 (150)
Q Consensus 56 C~-~~~yRt~DGsCNNl~~P~wG~a~tpf~Rllp~~Y~DG~~~Pr-----~s~~g~~LP~~R~VS~~l~~~~~---~~~~ 126 (150)
|+ ..+||++||+|||++||.||+++|+|.|+|||.|+||+++|| ++++|.+||+||+||+.|+.+.. .++.
T Consensus 1 C~~~~~yRt~DG~cNNl~~P~~G~a~t~f~R~lpp~Y~DG~~~p~~~~~~~~~~g~~lP~pR~VS~~l~~~~~~~~~~~~ 80 (104)
T 1d2v_A 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQ 80 (104)
T ss_dssp CCSCCSSCCSSCTTSSSSSTTTTCSSEECBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTCCCGGGCCEEE
T ss_pred CCCCCCccCCCCCccCCCCCccCcCCCccccccCcccccCcccccccccccccCCCcCCCHHHHHHHHHhcccccCCCCC
Confidence 54 479999999999999999999999999999999999999998 45678999999999999997543 4567
Q ss_pred chHHHHHHHHHHHHhhccCCCCCC
Q psy8890 127 AATVMLVAWGQFMDHDFTLTATPL 150 (150)
Q Consensus 127 ~~t~~~~~wgQfi~HDi~~t~~~~ 150 (150)
.+|+|+|||||||+|||++|+++.
T Consensus 81 ~~t~~~~~wgQfi~HDl~~t~~~~ 104 (104)
T 1d2v_A 81 ERSLMFMQWGQLLDHDLDFTPEPA 104 (104)
T ss_dssp EEEHHHHHHHHHHHHHHCCCCCCC
T ss_pred chHHHHHHHHHHHHhhHhhcCCCC
Confidence 789999999999999999999863
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=4.6e-34 Score=256.99 Aligned_cols=104 Identities=31% Similarity=0.577 Sum_probs=92.7
Q ss_pred cCcCcCCCCCCCC-CccccccccCcCCCCCCCCCCCCCcccccCCCCCCCCCCCccc-----CCCCCCCchhhhhhhhcC
Q psy8890 46 ICPAYLSNVECKP-GKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRIS-----NKGGNLPLARVVSSTMHP 119 (150)
Q Consensus 46 ~C~~~~~~~~C~~-~~yRt~DGsCNNl~~P~wG~a~tpf~Rllp~~Y~DG~~~Pr~s-----~~g~~LP~~R~VS~~l~~ 119 (150)
-|........|++ .+|||+||+|||++||.||+++|||.|+|||.|+|||++||++ .+|.+||+||+||+.|+.
T Consensus 5 gc~~~~~~~~C~~~~~yRt~DG~CNNl~~P~wGaa~t~f~R~lpp~Y~DGv~~Pr~~~~~~~~~g~~lP~~R~VS~~l~~ 84 (595)
T 3q9k_A 5 GCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVG 84 (595)
T ss_dssp CCCSSCCCCCCCSSCSSCCSSCTTSSSSSTTTTCSSEECBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCccCCCCCccCcCCcccCCCCCCccCCCCcccccccccccccccccccCCCCCCCHHHHHHHHHh
Confidence 4887766778987 6999999999999999999999999999999999999999864 568899999999999985
Q ss_pred ---CCCCCCCchHHHHHHHHHHHHhhccCCCCC
Q psy8890 120 ---DENKHEHAATVMLVAWGQFMDHDFTLTATP 149 (150)
Q Consensus 120 ---~~~~~~~~~t~~~~~wgQfi~HDi~~t~~~ 149 (150)
+...++..+|+|+|||||||+|||++|+.+
T Consensus 85 ~~~~~~~~~~~~t~~~~~wGQfi~HDi~~t~~~ 117 (595)
T 3q9k_A 85 YLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPET 117 (595)
T ss_dssp CSCCTTCEEEEEEHHHHHHHHHHHHHHCCCCBC
T ss_pred cccccCCCCCCchHHHHHHHHHHHhhhhccCcc
Confidence 344567789999999999999999998754
No 3
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.78 E-value=1.2e-19 Score=163.27 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=78.4
Q ss_pred hccCcCcCCCCCCCC-CccccccccCcCCCCCCCCCCCCCcccccCCCCCCCCCCCcccCCCCCCCchhhhhhhhcCCCC
Q psy8890 44 REICPAYLSNVECKP-GKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDEN 122 (150)
Q Consensus 44 ~~~C~~~~~~~~C~~-~~yRt~DGsCNNl~~P~wG~a~tpf~Rllp~~Y~DG~~~Pr~s~~g~~LP~~R~VS~~l~~~~~ 122 (150)
...|+. ...|.. .+|||+||+|| +|+|.|+|||.|+||++ |+++..+..||+||+||+.++....
T Consensus 90 ~~~~~~---p~~~~~~~~Yrs~dg~~N----------~t~~~R~lPp~y~dg~~-P~g~~~~~~LP~pr~vs~~l~~r~~ 155 (587)
T 3nt1_A 90 SYLIDS---PPTYNVHYGYKSWEAFSN----------LSYYTRALPPVADDCPT-PMGVKGNKELPDSKEVLEKVLLRRE 155 (587)
T ss_dssp HTTSCS---SCCBBTTBSSCCHHHHHC----------TTBCBBSSCCCCTTCSB-TTBSSSCSSCCCHHHHHHHHTBCSS
T ss_pred hccCCC---CCCCCCCCCccccccccC----------CCeeecccCCccccCCC-ccccCCCCCCCCHHHHHHHHhcCCC
Confidence 345773 578886 69999999999 79999999999999997 9988888999999999999986543
Q ss_pred -CCCC-chHHHHHHHHHHHHhhccCCCC
Q psy8890 123 -KHEH-AATVMLVAWGQFMDHDFTLTAT 148 (150)
Q Consensus 123 -~~~~-~~t~~~~~wgQfi~HDi~~t~~ 148 (150)
.+++ ..|+|+++|||||+|||..|..
T Consensus 156 ~~p~~~~~s~l~~~fgQ~i~Hd~f~t~~ 183 (587)
T 3nt1_A 156 FIPDPQGSNMMFAFFAQHFTHQFFKTDH 183 (587)
T ss_dssp CCBCTTCBBHHHHHHHHHHHTTTCCBCT
T ss_pred cCCCCCCccHHHHHHHHHHhhhccccCC
Confidence 3555 5899999999999999998854
No 4
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.74 E-value=1.1e-18 Score=155.77 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=70.1
Q ss_pred CCccccccccCcCCCCCCCCCC--CCCcccccCCCCCCCCCCCcccCCCCCCCchhhhhhhhcCCC-CCC-CCchHHHHH
Q psy8890 58 PGKYRRYDGLCTNLKHPTWGAV--NTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDE-NKH-EHAATVMLV 133 (150)
Q Consensus 58 ~~~yRt~DGsCNNl~~P~wG~a--~tpf~Rllp~~Y~DG~~~Pr~s~~g~~LP~~R~VS~~l~~~~-~~~-~~~~t~~~~ 133 (150)
|.+||+. -.||+||++ +|+|.|+|||.|+|| .+||.+..+.+||+||+||+.|+.+. ..+ +...|+|+|
T Consensus 96 P~~~~~~------~~~pswgs~~n~t~~~R~lpp~y~Dg-~~p~~~~~~~~LP~pr~vs~~l~~~~~~~p~~~~~s~l~~ 168 (553)
T 1q4g_A 96 PPTYNIA------HDYISWESFSNVSYYTRILPSVPRDC-PTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFA 168 (553)
T ss_dssp SCCEESS------CSSCCHHHHHCTTBCEESSCCCCTTC-SBTTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHH
T ss_pred CCccccc------cCCCCCCCCCCCCceeeccCCCccCC-CCcccCCCCCCCCCHHHHHHHHhccCCCCCCCCCccHHHH
Confidence 3578773 377999987 799999999999999 48987766689999999999998654 334 567899999
Q ss_pred HHHHHHHhhccCCC
Q psy8890 134 AWGQFMDHDFTLTA 147 (150)
Q Consensus 134 ~wgQfi~HDi~~t~ 147 (150)
+|||||+|||++|+
T Consensus 169 ~fgQfi~HDi~~t~ 182 (553)
T 1q4g_A 169 FFAQHFTHQFFKTS 182 (553)
T ss_dssp HHHHHHHTTTCCBC
T ss_pred HHHHHHhhhhhccc
Confidence 99999999999885
No 5
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=37.88 E-value=10 Score=19.87 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=6.3
Q ss_pred ccCcCCCC
Q psy8890 66 GLCTNLKH 73 (150)
Q Consensus 66 GsCNNl~~ 73 (150)
|+|||..-
T Consensus 5 gscn~fag 12 (26)
T 1rpb_A 5 GSCNDFAG 12 (26)
T ss_dssp SSBCSSSS
T ss_pred ecccCcCC
Confidence 89999753
No 6
>1b1v_A PSP1, protein (plasmatocyte-spreading peptide); insect cytokine, EGF-like; NMR {Synthetic} SCOP: j.8.1.1 PDB: 1b5n_A 1bqf_A 2eqh_A 2dj9_A 1hrl_A 1v28_A 2djc_A 1irr_A
Probab=33.54 E-value=14 Score=19.51 Aligned_cols=16 Identities=38% Similarity=0.735 Sum_probs=12.3
Q ss_pred CCCCCccccccccCcC
Q psy8890 55 ECKPGKYRRYDGLCTN 70 (150)
Q Consensus 55 ~C~~~~yRt~DGsCNN 70 (150)
-|.+.--|+.||.|--
T Consensus 6 gc~~gy~rtadgrckp 21 (26)
T 1b1v_A 6 GCLAGYMRTADGRCKP 21 (26)
T ss_dssp SCSSSCEECSSCCEEC
T ss_pred cccccceECCCCcccc
Confidence 4666677999999953
No 7
>2eqq_A GBP, growth-blocking peptide, long form; cytokine; NMR {Mythimna separata} SCOP: j.8.1.1 PDB: 2eqt_A
Probab=29.39 E-value=15 Score=19.61 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=12.3
Q ss_pred CCCCCccccccccCcC
Q psy8890 55 ECKPGKYRRYDGLCTN 70 (150)
Q Consensus 55 ~C~~~~yRt~DGsCNN 70 (150)
-|.+.--|+.||.|--
T Consensus 6 gc~~gy~rtadgrckp 21 (28)
T 2eqq_A 6 GCVAGYMRTPDGRCKP 21 (28)
T ss_dssp CCSTTEEECTTCCEEE
T ss_pred cccccceECCCCccCc
Confidence 4666677999999964
No 8
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=7.99 E-value=2.2e+02 Score=18.54 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=15.9
Q ss_pred hhHHHHHHcCCCHHHHHhcC
Q psy8890 14 GTKTLKAIYDLSYEEVEKGL 33 (150)
Q Consensus 14 ~s~~~~~~~~l~~~~~~~gl 33 (150)
++..|++++|+++..+-..|
T Consensus 31 Ta~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 31 TAISLSNRLKINKKKINQQL 50 (75)
T ss_dssp CHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 57899999999998774443
No 9
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=7.24 E-value=1.4e+02 Score=20.37 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=11.5
Q ss_pred CCCCCchhhhhhhh
Q psy8890 104 GGNLPLARVVSSTM 117 (150)
Q Consensus 104 g~~LP~~R~VS~~l 117 (150)
|..||+.|+++..+
T Consensus 35 G~~LPser~La~~~ 48 (134)
T 4ham_A 35 GEKILSIREFASRI 48 (134)
T ss_dssp TCEECCHHHHHHHH
T ss_pred CCCCccHHHHHHHH
Confidence 77899999988654
No 10
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=6.78 E-value=1.9e+02 Score=14.51 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=5.3
Q ss_pred cccccCcCC
Q psy8890 63 RYDGLCTNL 71 (150)
Q Consensus 63 t~DGsCNNl 71 (150)
+.||.|...
T Consensus 3 sadgacswr 11 (23)
T 3ox7_P 3 SADGACSWR 11 (26)
T ss_pred ccCcccccc
Confidence 456777653
Done!