Query psy8890
Match_columns 150
No_of_seqs 162 out of 714
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 22:03:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8890.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8890hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1cxp.1 a.93.1.2 (A:,C:) Myelo 100.0 3.5E-33 2.5E-37 247.4 6.7 94 56-149 1-103 (570)
2 d1cvua1 a.93.1.2 (A:74-583) Pr 99.6 2.4E-16 1.7E-20 137.6 5.9 79 68-147 58-141 (511)
3 d1q4ga1 a.93.1.2 (A:74-584) Pr 99.5 3.3E-15 2.4E-19 130.3 5.7 79 59-148 61-141 (511)
4 d1xrsb2 d.230.4.1 (B:33-84) D- 37.2 7.3 0.00053 22.7 1.6 18 10-27 15-32 (52)
5 d1hw1a1 a.4.5.6 (A:5-78) Fatty 15.3 37 0.0027 20.0 1.9 15 104-118 24-38 (74)
6 d1ijwc_ a.4.1.2 (C:) HIN recom 15.0 67 0.0049 17.5 2.8 25 11-35 20-44 (47)
7 d3bwga1 a.4.5.6 (A:5-82) Trans 11.2 45 0.0033 19.5 1.3 15 104-118 19-33 (78)
8 d1v4ra1 a.4.5.6 (A:1-100) Tran 10.9 62 0.0045 19.9 2.0 21 92-117 23-43 (100)
9 d2dt5a1 a.4.5.38 (A:4-77) Tran 10.7 35 0.0025 20.8 0.6 24 14-37 27-50 (74)
10 d1wm8a_ g.3.7.2 (A:) Neurotoxi 9.0 46 0.0034 16.3 0.6 11 60-70 16-26 (28)
No 1
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=3.5e-33 Score=247.42 Aligned_cols=94 Identities=34% Similarity=0.687 Sum_probs=84.1
Q ss_pred CCC-CccccccccCcCCCCCCCCCCCCCcccccCCCCCCCCCCCc-----ccCCCCCCCchhhhhhhhcCC---CCCCCC
Q psy8890 56 CKP-GKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPR-----ISNKGGNLPLARVVSSTMHPD---ENKHEH 126 (150)
Q Consensus 56 C~~-~~yRt~DGsCNNl~~P~wG~a~tpf~Rllp~~Y~DG~~~Pr-----~s~~g~~LP~~R~VS~~l~~~---~~~~~~ 126 (150)
|++ .+|||+||+|||++||.||+|+|||.|++||.|+||+++|| .+.+|.+||+||+||+.|+.. ...++.
T Consensus 1 C~~~~~YRt~DGscNNl~~P~wG~a~~p~~R~lp~~Y~Dg~~~p~~~~~~~~~~g~~lP~pR~vS~~l~~~~~~~~~~~~ 80 (570)
T g1cxp.1 1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQ 80 (570)
T ss_dssp CCSCCSSCCSSCTTSSSSSTTTTCSSEECBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTCCCGGGCCEEE
T ss_pred CCCCCCCCCCCCCcccccccccCCCCCCcccCCCcccccccccccccCcCcCCCCCCCCCHHHHHHHHHhccCCCCCCCc
Confidence 666 59999999999999999999999999999999999999998 456899999999999999853 234566
Q ss_pred chHHHHHHHHHHHHhhccCCCCC
Q psy8890 127 AATVMLVAWGQFMDHDFTLTATP 149 (150)
Q Consensus 127 ~~t~~~~~wgQfi~HDi~~t~~~ 149 (150)
.+|+|+|+|||||+|||++|+.+
T Consensus 81 ~~t~l~~~fgQfi~HDi~~t~~~ 103 (570)
T g1cxp.1 81 ERSLMFMQWGQLLDHDLDFTPEP 103 (570)
T ss_dssp EEEHHHHHHHHHHHHHHCCCCCC
T ss_pred ccHHHHHHHHHHHHhhcccCCCC
Confidence 78999999999999999998753
No 2
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.60 E-value=2.4e-16 Score=137.64 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=65.4
Q ss_pred CcCCC-CCCCCC--CCCCcccccCCCCCCCCCCCcccCCCCCCCchhhhhhhhcCCCC-CCC-CchHHHHHHHHHHHHhh
Q psy8890 68 CTNLK-HPTWGA--VNTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDEN-KHE-HAATVMLVAWGQFMDHD 142 (150)
Q Consensus 68 CNNl~-~P~wG~--a~tpf~Rllp~~Y~DG~~~Pr~s~~g~~LP~~R~VS~~l~~~~~-~~~-~~~t~~~~~wgQfi~HD 142 (150)
||... .++|++ ..|.|.|+|||.|+||+ .|+.+..+.+||+||+||.+++.+.. .++ ...|+|+++|||||+||
T Consensus 58 ~~~~~~y~sw~~~~~~t~y~R~LPP~~~d~~-~p~~~~~~~~LP~pr~vs~~l~~r~~~~p~p~~~s~m~~~faQ~i~Hd 136 (511)
T d1cvua1 58 YNVHYGYKSWEAFSNLSYYTRALPPVADDCP-TPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTAQ 136 (511)
T ss_dssp BBTTBSSCCHHHHHCTTBCBBSSCCCCTTCS-BTTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHHHHHHHHHTT
T ss_pred CCCCCCCCChhhcccccchhccCCCCCcCCC-CCCcCCCCCCCcCHHHHHHHHhccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 44333 366665 67999999999999999 59999999999999999999986543 344 45799999999999999
Q ss_pred ccCCC
Q psy8890 143 FTLTA 147 (150)
Q Consensus 143 i~~t~ 147 (150)
+..|.
T Consensus 137 ~~~t~ 141 (511)
T d1cvua1 137 FFKTD 141 (511)
T ss_dssp TCCBC
T ss_pred hhcCC
Confidence 99885
No 3
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=99.52 E-value=3.3e-15 Score=130.30 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=65.4
Q ss_pred CccccccccCcCCCCCCCCCCCCCcccccCCCCCCCCCCCcccCCCCCCCchhhhhhhhcCCC-CCCCC-chHHHHHHHH
Q psy8890 59 GKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDE-NKHEH-AATVMLVAWG 136 (150)
Q Consensus 59 ~~yRt~DGsCNNl~~P~wG~a~tpf~Rllp~~Y~DG~~~Pr~s~~g~~LP~~R~VS~~l~~~~-~~~~~-~~t~~~~~wg 136 (150)
..|+|.++--| .|.|.|+|||.|+||. .|+.++.+.+||+||.||..++... ..+++ ..|+|+++||
T Consensus 61 ~~y~~w~~~~~----------~t~y~R~lPP~~~d~~-~p~~~~g~~~LP~pr~vs~~l~~r~~~~p~~~~~s~m~~~~a 129 (511)
T d1q4ga1 61 HDYISWESFSN----------VSYYTRILPSVPRDCP-TPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFA 129 (511)
T ss_dssp CSSCCHHHHHC----------TTBCEESSCCCCTTCS-BTTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHHHHH
T ss_pred CCCCChhhccC----------cchhhccCCCCCcCCC-CCcCcCCCCCCcCHHHHHHHHhccCCCCCCCCchHHHHHHHH
Confidence 46777776433 3679999999999999 5999888999999999999998544 44544 5799999999
Q ss_pred HHHHhhccCCCC
Q psy8890 137 QFMDHDFTLTAT 148 (150)
Q Consensus 137 Qfi~HDi~~t~~ 148 (150)
|||+|||..|..
T Consensus 130 Q~i~HD~f~t~~ 141 (511)
T d1q4ga1 130 QHFTHQFFKTSG 141 (511)
T ss_dssp HHHHTTTCCBCT
T ss_pred HHHHHHhhcCCC
Confidence 999999998864
No 4
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=37.23 E-value=7.3 Score=22.69 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHcCCCHH
Q psy8890 10 SRRQGTKTLKAIYDLSYE 27 (150)
Q Consensus 10 ~~~~~s~~~~~~~~l~~~ 27 (150)
+++||+++|+++.|+..-
T Consensus 15 ~A~eAAk~la~kMGl~~p 32 (52)
T d1xrsb2 15 RSAEAAKQIALKMGLEEP 32 (52)
T ss_dssp HHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHhCCCch
Confidence 578999999999998743
No 5
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=37 Score=20.02 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.7
Q ss_pred CCCCCchhhhhhhhc
Q psy8890 104 GGNLPLARVVSSTMH 118 (150)
Q Consensus 104 g~~LP~~R~VS~~l~ 118 (150)
|..||+.|+++..+-
T Consensus 24 G~~LPs~~eLa~~~~ 38 (74)
T d1hw1a1 24 GTILPAERELSELIG 38 (74)
T ss_dssp TSBCCCHHHHHHHHT
T ss_pred cCCCccHHHHHHHHC
Confidence 788999999998764
No 6
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=15.01 E-value=67 Score=17.49 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHcCCCHHHHHhcCCC
Q psy8890 11 RRQGTKTLKAIYDLSYEEVEKGLPL 35 (150)
Q Consensus 11 ~~~~s~~~~~~~~l~~~~~~~gl~~ 35 (150)
.-+.-.++++.||++...|-..+|.
T Consensus 20 ~G~s~~~iA~~~gVSr~TiYry~pa 44 (47)
T d1ijwc_ 20 KGHPRQQLAIIFGIGVSTLYRYFPA 44 (47)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSCS
T ss_pred CCCCHHHHHHHHCcCHHHHHhhCCc
Confidence 3344567777788877777666654
No 7
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=11.22 E-value=45 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=12.5
Q ss_pred CCCCCchhhhhhhhc
Q psy8890 104 GGNLPLARVVSSTMH 118 (150)
Q Consensus 104 g~~LP~~R~VS~~l~ 118 (150)
|..||+.|+++..+-
T Consensus 19 G~~LPse~~La~~~~ 33 (78)
T d3bwga1 19 GDKLPVLETLMAQFE 33 (78)
T ss_dssp TCBCCCHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHC
Confidence 788999999997653
No 8
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=10.91 E-value=62 Score=19.94 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=15.3
Q ss_pred CCCCCCCcccCCCCCCCchhhhhhhh
Q psy8890 92 SDGLTSPRISNKGGNLPLARVVSSTM 117 (150)
Q Consensus 92 ~DG~~~Pr~s~~g~~LP~~R~VS~~l 117 (150)
.+|...| |..||+-|+++..+
T Consensus 23 ~~g~l~~-----G~~LPs~r~La~~~ 43 (100)
T d1v4ra1 23 KSGELAP-----GDTLPSVADIRAQF 43 (100)
T ss_dssp TTTSCCT-----TSBCCCHHHHHHHS
T ss_pred HcCCCCC-----cCCCccHHHHHHHH
Confidence 4555544 78899999998765
No 9
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=10.74 E-value=35 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.1
Q ss_pred hhHHHHHHcCCCHHHHHhcCCCCc
Q psy8890 14 GTKTLKAIYDLSYEEVEKGLPLID 37 (150)
Q Consensus 14 ~s~~~~~~~~l~~~~~~~gl~~~~ 37 (150)
.|..|++..++++.|+...|..+.
T Consensus 27 SS~~La~~~gi~~~qVRKDls~fG 50 (74)
T d2dt5a1 27 SSEQLGGLAQVTAFQVRKDLSYFG 50 (74)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred cHHHHHHHHCcCHHHHHHHHHHhc
Confidence 489999999999999988775544
No 10
>d1wm8a_ g.3.7.2 (A:) Neurotoxin bmp03 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=9.04 E-value=46 Score=16.31 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=7.2
Q ss_pred ccccccccCcC
Q psy8890 60 KYRRYDGLCTN 70 (150)
Q Consensus 60 ~yRt~DGsCNN 70 (150)
.---.||.||-
T Consensus 16 ~ptc~dgvcnc 26 (28)
T d1wm8a_ 16 NPTCDDGVCNC 26 (28)
T ss_dssp CSCCCSSSCCC
T ss_pred CCcccCccccc
Confidence 34446899983
Done!