RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8890
(150 letters)
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 116 bits (292), Expect = 3e-31
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 61 YRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPD 120
YR DG C NL++P WGA TPF RL+ P++ DG+++PR S G LP RVVS+ +
Sbjct: 1 YRSADGSCNNLQNPLWGAAGTPFTRLLPPVYEDGVSTPRGSVNGSPLPSPRVVSNKLLAR 60
Query: 121 ENK---HEHAATVMLVAWGQFMDHDFTLTATP 149
+N + T+ML WGQF+DHD T T
Sbjct: 61 KNGFIPPDPGLTLMLAQWGQFIDHDLTFTPHS 92
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 53.6 bits (129), Expect = 4e-09
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 77 GAVNTPFQRLIGPLFSDGLTSPRISNK-----GGNLPLARVV-------SSTMHPDENKH 124
GA NTP R + P++ DG + P NK G LP R V SST ++ +
Sbjct: 1 GASNTPLARWLPPIYEDGFSEPVGWNKERLYNGFTLPSVREVSNKIMRTSSTAVTPDDLY 60
Query: 125 EHAATVMLVAWGQFMDHDFTLTAT 148
H ML WGQ++DHD T
Sbjct: 61 SH----MLTVWGQYIDHDIDFTPQ 80
Score = 33.9 bits (78), Expect = 0.023
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 56 CKPGKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFS-DGLTSPRISNKGGN---LPLAR 111
+ +GL + + T R + L S DGL LP
Sbjct: 143 SLANPREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDSGRDYLPFQP 202
Query: 112 VVSSTMHPDEN 122
S+ +PD N
Sbjct: 203 EEVSSCNPDPN 213
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 43.1 bits (102), Expect = 2e-05
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 64 YDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVS-------ST 116
YDG NL HP WGA ++ R + +SDG+ +P G P R +S S
Sbjct: 1 YDGWYNNLAHPEWGAADSRLTRRLPAHYSDGVYAPS----GEERPNPRSLSNLLMKGESG 56
Query: 117 MHPDENKHEHAATVMLVAWGQ 137
+ N+ T +LV +GQ
Sbjct: 57 LPSTRNR-----TALLVFFGQ 72
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 40.7 bits (96), Expect = 9e-05
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 62 RRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSST-MHPD 120
R DG +L +P+ G+V T F R + + + P RV+S +
Sbjct: 1 RTADGSYNDLDNPSMGSVGTRFGRNVPLDATFPEDKDELLT-----PNPRVISRRLLART 55
Query: 121 ENKHEHAATVMLVAWGQFMDHD 142
E K + ++ AW QFM HD
Sbjct: 56 EFKPATSLNLLAAAWIQFMVHD 77
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 40.8 bits (96), Expect = 9e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 106 NLPLARVVSSTM--HPDENKHEHAATVMLVAWGQFMDHDFTLT 146
+ P R +S+ + + + + WGQF+DHD LT
Sbjct: 1 DRPSPREISNAVADQTESIPNSRGLSDWFWVWGQFLDHDIDLT 43
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 33.5 bits (77), Expect = 0.031
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 47 CPAYLSNVECKPGKYRRYDGLCTNLKHPTWGAVNTPFQRLIGPL 90
+YL + KYR+ DG N+ +P GA +P+ R + P
Sbjct: 23 PDSYLGD----NYKYRKADGSNNNILNPRLGAAGSPYARSVPPK 62
>gnl|CDD|225118 COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit
[Signal transduction mechanisms / Transcription].
Length = 367
Score = 30.1 bits (68), Expect = 0.44
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 90 LFSDGLTSPRISNKGGNLPLARVV-----SSTMHPDENKHEHAATVMLVAWGQFMDHDFT 144
L++DG+T R ++ G L R++ +E ++ + Q D D T
Sbjct: 301 LYTDGVTEAR-NSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQDDDIT 359
Query: 145 L 145
L
Sbjct: 360 L 360
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 28.5 bits (64), Expect = 1.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 135 WGQFMDHDFTLTATP 149
GQF+DHD TL T
Sbjct: 53 LGQFIDHDITLDTTS 67
>gnl|CDD|233158 TIGR00865, bcl-2, apoptosis regulator. The Bcl-2 (Bcl-2) Family
(TC 1.A.21) The Bcl-2 family consists of the apoptosis
regulator, Bcl-X, and its homologues. Bcl-X is a
dominant regulator of programmed cell death in mammalian
cells. The long form (Bcl-X(L)) displays cell death
repressor activity, but the short isoform (Bcl-X(S)) and
the b-isoform (Bcl-Xb) promote cell death. Bcl-X(L),
Bcl-X(S) and Bcl-Xb are three isoforms derived by
alternative RNA splicing. Bcl-X(S) forms heterodimers
with Bcl-2. Homologues of Bcl-X include the Bax (rat;
192 aas; spQ63690) and Bak (mouse; 208 aas; spO08734)
proteins which also influence apoptosis. Using isolated
mitochondria, recombinant Bax and Bak have been shown to
induce Dy loss, swelling and cytochrome c release. All
of these changes are dependent on Ca2+ and are prevented
by cyclosporin A and bongkrekic acid, both of which are
known to close permeability transition pores
(megachannels). Coimmimoprecipitation studies revealed
that Bax and Bak interact with VDAC to form permeability
transition pores. Thus, even though they can form
channels in artificial membranes at acidic pH,
proapoptotic Bcl-2 family proteins (including Bax and
Bak) probably induce the mitochondrial permeability
transition and cytochrome c release by interacting with
permeability transition pores, the most important
component for pore fomation of which is VDAC [Regulatory
functions, Other].
Length = 213
Score = 27.9 bits (62), Expect = 2.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRI 100
+YRR T+ H T F ++ LF DG+ RI
Sbjct: 81 RYRRAFSDMTSQLHITPFTARQSFFQVAAELFRDGVNWGRI 121
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 28.0 bits (63), Expect = 2.0
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 22 YDLSYEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYR 62
Y + ++ + L T I+ CPA + R
Sbjct: 100 YVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR 140
>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 365
Score = 27.7 bits (62), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 13 QGTKTLKAIYD-LSYEEVEKGLPLI 36
QGT TLK +Y+ L +++K PL
Sbjct: 309 QGTVTLKEVYEVLESHDLKKEFPLF 333
>gnl|CDD|220663 pfam10266, Strumpellin, Hereditary spastic paraplegia protein
strumpellin. This is a family of proteins conserved
from plants to humans, in which two closely situated
point mutations in the human protein lead to the
condition of hereditary spastic paraplegia. Strumpellin
contains one known domain called a spectrin repeat that
consists of three alpha-helices of a characteristic
length wrapped in a left-handed coiled coil. The
spectrin proteins have multiple copies of this repeat,
which can then form multimers in the cell. Spectrin
associates with the cell membrane via spectrin repeats
in the ankyrin protein. The spectrin repeat is a
structural platform for cytoskeletal protein assemblies.
Length = 1077
Score = 26.9 bits (60), Expect = 4.6
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 15 TKTLKAIYDLSYEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYRRYDGLCTNLKHP 74
K L+ E++E L E+ P S K Y+ L + P
Sbjct: 859 AKELQQFLSTLQEKLELEKRWRGALTNLQNELRP--TSAFPENSLKI--YEQLTKRIS-P 913
Query: 75 TWGAVNTPFQRLIG 88
+ + IG
Sbjct: 914 ASAELLDWLAQ-IG 926
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,533,466
Number of extensions: 649289
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 19
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)