RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8890
(150 letters)
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A*
4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Length = 104
Score = 108 bits (271), Expect = 7e-32
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 60 KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPRISNK-----GGNLPLARVVS 114
KYR G+C N + PT GA N F R + + DG + P G + LAR VS
Sbjct: 6 KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 65
Query: 115 STM---HPDENKHEHAATVMLVAWGQFMDHDFTLTATP 149
+ + D+ + ++M + WGQ +DHD T P
Sbjct: 66 NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEP 103
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 101 bits (253), Expect = 3e-26
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 47 CPAYLSNVECKPG-KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSP-----RI 100
C A + V+C YR G C N + P GA N R + + DGL P R
Sbjct: 6 CGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRK 65
Query: 101 SNKGGNLPLARVVSSTMHPDENK---HEHAATVMLVAWGQFMDHDFTLTATP 149
+ G +PLAR VS+ + ++ + +++ + WGQ +DHD
Sbjct: 66 TRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPET 117
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 63.6 bits (154), Expect = 7e-13
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 67 LCTNLKHPTWGAVN--TPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDEN-- 122
+ + +W A + + + R P +D +P LP ++ V +
Sbjct: 99 YNVHYGYKSWEAFSNLSYYTRA-LPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFI 157
Query: 123 KHEHAATVMLVAWGQFMDHDFTLT 146
+ +M + Q H F T
Sbjct: 158 PDPQGSNMMFAFFAQHFTHQFFKT 181
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 62.7 bits (152), Expect = 2e-12
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 72 KHPTWGAV--NTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDENKHEHAA- 128
+ +W + + + R++ + D +P + LP A +S
Sbjct: 104 DYISWESFSNVSYYTRILPSVPRDC-PTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQG 162
Query: 129 -TVMLVAWGQFMDHDFTLT 146
+M + Q H F T
Sbjct: 163 TNLMFAFFAQHFTHQFFKT 181
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA;
FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Length = 299
Score = 28.5 bits (63), Expect = 0.88
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 26 YEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYRRYDGLCTNLKHPTWGAVNTPFQR 85
+ + +G PL + +I + + Y++ + N + A
Sbjct: 144 FLQNSQGKPL---TVQMIENLNHGLRPDEGEGRLLYKKENLTKENAVFSSPEAAKIQLAE 200
Query: 86 LI 87
+
Sbjct: 201 TV 202
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 27.0 bits (60), Expect = 2.4
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 7 NVNSRRQGTKTLKAIYDLSYEEVEKGLPLIDTSKTLIRE 45
+N++ ++ L Y E + LID+S+ L
Sbjct: 197 EINTKTGESECRYYKERLLYLEEGQKDSLIDSSRVLCCH 235
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L
MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A
3v0t_A* 3uyi_A*
Length = 337
Score = 26.0 bits (57), Expect = 5.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 1 MTTYYGNVNSRRQGTKTLKAIYDLSYEEVEKGLPLIDTS 39
++ Y + QG +K ++ G+ DTS
Sbjct: 23 LSGDYNDALPEEQGIAVIKEAFNC-------GITFFDTS 54
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A
{Homo sapiens} SCOP: b.122.1.12
Length = 239
Score = 25.6 bits (55), Expect = 6.9
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 14 GTKTLKAIYDLSYEEVEKGLPLIDTSKTLIREIC-PAYLSNVECKPGKYRRYDGL 67
+ L + E S +R + N + P + RYDG+
Sbjct: 100 TNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGI 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 7.0
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 58/123 (47%)
Query: 20 AIYDLSYEEVEK-------GLP--------LIDTSKTLIREIC--PAYLSNVECKPGKYR 62
+I +L+ E+V+ LP L++ +K L+ + P L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSL----------- 386
Query: 63 RYDGLCTNL---KHPTWGAVN---TPF-QRLIGPLFSDGLTSPRISNKGGNLPLARVVSS 115
GL L K P+ ++ PF +R + SN+ LP V+S
Sbjct: 387 --YGLNLTLRKAKAPS--GLDQSRIPFSER-----------KLKFSNRF--LP----VAS 425
Query: 116 TMH 118
H
Sbjct: 426 PFH 428
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 25.4 bits (55), Expect = 9.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 55 ECKPGKYRRYDGLCTN 70
E K Y LC+
Sbjct: 208 EKCIEKDETYKNLCSA 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,310,896
Number of extensions: 126075
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 16
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)