RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8890
         (150 letters)



>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score =  115 bits (290), Expect = 1e-31
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 60  KYRRYDGLCTNLKHPTWGAVNTPFQRLIGPLFSDGLTSPR-----ISNKGGNLPLARVVS 114
           KYR   G+C N + PT GA N  F R +   + DG + P      +   G  + LAR VS
Sbjct: 6   KYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVS 65

Query: 115 STM---HPDENKHEHAATVMLVAWGQFMDHDFTLTATP 149
           + +     D+   +   ++M + WGQ +DHD   T  P
Sbjct: 66  NEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEP 103


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 59.6 bits (144), Expect = 7e-12
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 74  PTWGAV--NTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDENKHEHAA--T 129
            +W A    + + R + P+  D  T P        LP ++ V   +              
Sbjct: 65  KSWEAFSNLSYYTRALPPVADDCPT-PMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSN 123

Query: 130 VMLVAWGQFMDHDFTLT 146
           +M   + Q     F  T
Sbjct: 124 MMFAFFAQHFTAQFFKT 140


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 70  NLKHP--TWGAV--NTPFQRLIGPLFSDGLTSPRISNKGGNLPLARVVSSTMHPDENKHE 125
           N+ H   +W +    + + R++  +  D  T P  +     LP A  +S           
Sbjct: 58  NIAHDYISWESFSNVSYYTRILPSVPRDCPT-PMGTKGKKQLPDAEFLSRRFLLRRKFIP 116

Query: 126 HAA--TVMLVAWGQFMDHDFTLT 146
                 +M   + Q   H F  T
Sbjct: 117 DPQGTNLMFAFFAQHFTHQFFKT 139


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 25.1 bits (54), Expect = 4.5
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 18/64 (28%)

Query: 7   NVNSRRQGTKTLKAIYDLSYEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYRRYDG 66
            +   R     + AIY             +  +K  I  I        + K  KY  +  
Sbjct: 76  LIKQDRSPLPDVPAIY------------FVSPTKENIDIIV------NDLKSDKYSEFYI 117

Query: 67  LCTN 70
             T+
Sbjct: 118 NFTS 121


>d1wy5a2 d.229.1.1 (A:217-311) TilS-like protein Aq_1887 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 95

 Score = 24.0 bits (52), Expect = 4.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 19 KAIYDLSYEEVEKGLPLIDTSKTL 42
          K I +  YE+VE    L++    +
Sbjct: 57 KFIGEKDYEKVELVRSLLEKGGEV 80


>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 589

 Score = 24.6 bits (53), Expect = 7.0
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 7   NVNSRRQGTKTLKAIYDLSYEEVEKGLPLIDTSKTLIREICPAYLSNVECKPGKYRRYDG 66
           ++N RR+   +L+A+Y            LI  S+  +  +  +   +      KYR    
Sbjct: 57  DINKRREPLPSLEAVY------------LITPSEKSVHSLI-SDFKD--PPTAKYRAAHV 101

Query: 67  LCTN 70
             T+
Sbjct: 102 FFTD 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,569
Number of extensions: 24334
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)